Citrus Sinensis ID: 009871

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520---
Protein Sequence
MESSNAPNAGIGKEEAPKLQIYPTPNTGVSPFWRDKYEREAKKYWDLFYKRHQDRFFKDRHYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGFDVEELGLCCKQVENRARELVMNRRWVQAVFCSSGGATSSSEEASVRVDIFNQAIIEPDVAANTLKEPMNDSEVDMSEGVAFEMFGLSSFEDNEMIEVNLRDRSFKIEVLSKEYQHTCRSTGLMLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLVDKWPSKNSASPSESIISSWFSENGHEVYLPSPALNIMYFQVE
Secondary Structure (PSIPRED)
ccccccccccccccccHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHccccccccccEEEEEcccccccccHHcccccccEEEEEcccHHHHHHHHHccccccccEEEEEEEccccccccccccccccEEEEEEEccccccccccEEEEcccEEEEEEcHHHHHHHHHHccccEEEEEEEEEEEEcccccccccHHHHHHHHccccccccccccccHHHccccccccccHHHHHcccccccccccccccccEEEEEEcccccccccEEEEEccccEEEEEEEEEcccccccccEEEcHHHHHHHHHHHccccccccccEEEEcccccHHHHHHHHccccEEEEEcccHHHHHHHHHHHHHcccccccccEEEEEEEEcccccHHHHHHHccccccEEEEccEEEccccHHHHHHHHHHHHcccccccccccccEEEEEEEEccccHHHHHHHHHHcccEEEEEcccccccccccccccccccccccccccccccEEEEEEEEc
Secondary Structure Prediction (SSPRO)
ccccccccccccHHHHHHHHHHHcccccccHHHHHHHHHcHHHHHHHHHHHcccccHHcHHHHHHHHHHHccccccEEEEEEcccccccHHHHHHccccEEEEEEcccHHHHHHHHHcccccHHHcEEEEEEccccccccccccccEEEEEEEEEEccccEccccEEEEccccEEEEEcHHHHHHHHHHcccEEEEEcEEEEEEEcccccccEEEEEEEEEEEccccccccccccccEcccccccccccHHHHHcccccccccEEEcccHHHHHHcccccccccEEEEEEcccccEEEEEEEccccccccccccHHHHHHHHHHHHHHHcccHEcccEEEEEccccHHHHHHHHHHHccEEEEccccHHHHHHHHHHHHHcccccHHHHHHHHHHccccHHHHHHHHHHcccccEEEEEcccEEcHHHHHHHHHHHHHHHcccccccccccccEEEEEEEEHcccHHHHHHHHHHcccEEEEccccccccccccccEcccccccccHHHccccHHHEEEEEcc
Coil and Loop (DISEMBL)
messnapnagigkeeapklqiyptpntgvspfwrDKYEREAKKYWDLFYKRHQdrffkdrhyldkewgryfsgagrkdvlevgcgagntifpliaaypdvfvyacdfspravNLVMTHKDFTETRVSTFVCDLisddlsrqispssidivtmerltgkdqkisenfyvrgdgtrafyfSNDFLTSLfkengfdveELGLCCKQVENRARELVMNRRWVQAVFcssggatssseeaSVRVDIFnqaiiepdvaantlkepmndsevdmsegvafemfglssfednemiEVNLRDRSFKIEVLSKEYQHTCRSTGLMLWESAHLMAAVLARNPTIVAGKKVLelgcgcggicsMVAAGSADLVVATDGDSIALDLLAQnvtanlkppFLAKLITKRLEWGNRDHIEAIKEENNEGFevilgtdvsyipeaILPLFATAKELTassnkslredqqpaFILCHIfrqvdepsmlsaatqcgfrlvdkwpsknsaspsesIISSwfsenghevylpspalnimYFQVE
Flexible Loop (DISEMBL)
messnapnagigkeeapklqiyptpntgvspfwrdKYEREAKKYWDLFYKRHqdrffkdrhylDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLIsddlsrqispssidivtmerltgkdqkisenfyvrgdGTRAFYFSNDFLTSLFKENGFDVEELGLCCKQVENRARELVMNRRWVQAVFCssggatssseeasVRVDIFNQAIIEPDVAANTLKEPMNDSEVDMSEGVAFEMFGLSSFEDNEMIEVNLRDRSFKIEVLSKEYQHTCRSTGLMLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQnvtanlkppfLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLVDKWPSKNSASPSESIISSWFSENGHEVYLPSPALNIMYFQVE
Low Complexity Region (SEG)
MESSNAPNAGIGKEEAPKLQIYPTPNTGVSPFWRDKYEREAKKYWDLFYKRHQDRFFKDRHYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGFDVEELGLCCKQVENRARELVMNRRWVQAVFCssggatssseeasVRVDIFNQAIIEPDVAANTLKEPMNDSEVDMSEGVAFEMFGLSSFEDNEMIEVNLRDRSFKIEVLSKEYQHTCRSTGLMLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLVDKwpsknsaspsesiisswfsenGHEVYLPSPALNIMYFQVE
Disordered region (IsUnstruct)
********************IYPTPNTGVSPFWRDKYEREAKKYWDLFYKRHQDRFFKDRHYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGFDVEELGLCCKQVENRARELVMNRRWVQAVFCSS***********VRVDIFNQAIIEPDVA*****************GVAFEMFGLSSFEDNEMIEVNLRDRSFKIEVLSKEYQHTCRSTGLMLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKEL*************PAFILCHIFRQVDEPSMLSAATQCGFRLVDKW***********IISSWFSENGHEVYLPSPALNIMYF***
Disordered Region (DISOPRED)
********************************************WDLFYKRHQDRFFKDRHYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGFDVEELGLCCKQVENRARELVMNRRWVQAVFCSSGGATSSSEEASVRVDIFNQAIIEPD*********************AFEMFGLSSFEDNEMIEVNLRDRSFKIEVLSKEYQHTCRSTGLMLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLVDKWPSKN************FSENGHEVYLPSPALNIMYFQV*
Disordered Region (DISEMBL)
**********IGKEEAPKLQIYPTPNTGVSPFWRDKYEREAKKYWDLFYKRHQDRFFKDRHYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGFDVEELGLCCKQVENRARELVMNRRWVQAVFC************SVRVDIFNQAIIEPDVAANTLKEPMNDSEVDMSEGVAFEMFGLSSFEDNEMIEVNLRDRSFKIEVLSKEYQHTCRSTGLMLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLVDKWP*********SIISSWFSENGHEVYLPSPALNIMYFQVE
Disordered Region (DISPRO)
***********************TPNTGVSPFWRDKYEREAKKYWDLFYKRHQDRFFKDRHYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGFDVEELGLCCKQVENRARELVMNRRWVQAVFCSSG********************IEP*VA**TLKEPMNDSEVDMSEGVAFEMFGLSSFEDNEMIEVNLRDRSFKIEVLSKEYQHTCRSTGLMLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLVDKWPSKNSASPSESIISSWFSENGHEVYLPSPALNIMYFQVE
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MESSNAPNAGIGKEEAPKLQIYPTPNTGVSPFWRDKYEREAKKYWDLFYKRHQDRFFKDRHYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTMERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGFDVEELGLCCKQVENRARELVMNRRWVQAVFCSSGGATSSSEEASVRVDIFNQAIIEPDVAANTLKEPMNDSEVDMSEGVAFEMFGLSSFEDNEMIEVNLRDRSFKIEVLSKEYQHTCRSTGLMLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLVDKWPSKNSASPSESIISSWFSENGHEVYLPSPALNIMYFQVE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	523	2.2.26 [Sep-21-2011]
Q8TCB7	284	Methyltransferase-like pr	yes	no	0.399	0.735	0.339	6e-34
Q6AXU8	287	Methyltransferase-like pr	yes	no	0.369	0.672	0.355	2e-33
Q8BVH9	282	Methyltransferase-like pr	yes	no	0.369	0.684	0.351	7e-33
Q5RDV8	282	Methyltransferase-like pr	yes	no	0.376	0.698	0.340	5e-32
O74386	248	Uncharacterized methyltra	yes	no	0.374	0.790	0.336	2e-28
Q08641	628	Uncharacterized methyltra	yes	no	0.369	0.307	0.325	9e-27
A8KBL7	353	Methyltransferase-like pr	no	no	0.361	0.535	0.283	2e-25
Q86BS6	325	Methyltransferase-like pr	no	no	0.401	0.646	0.298	5e-25
Q9P7L6	307	Uncharacterized methyltra	no	no	0.359	0.612	0.302	6e-25
Q5M8E6	337	Methyltransferase-like pr	no	no	0.361	0.560	0.292	3e-24

>sp|Q8TCB7|METL6_HUMAN Methyltransferase-like protein 6 OS=Homo sapiens GN=METTL6 PE=2 SV=2

 Score =  145 bits (367), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 87/256 (33%), Positives = 128/256 (50%), Gaps = 47/256 (18%)

Query: 11  IGKEEAPKLQIYPTPNTGVSPFWRDKYEREAKKYWDLFYKRHQDRFFKDRHYLDKEWGRY 70
           +  EE  KL+      T VS F + K E+EA+K WDLFYKR+   FFKDRH+  +E+   
Sbjct: 14  LTSEEEEKLK---RDQTLVSDFKQQKLEQEAQKNWDLFYKRNSTNFFKDRHWTTREFEEL 70

Query: 71  FSGAGRKD----VLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRV 126
            S    +D    +LE GCG GN +FPL+   P++F YACDFSPRA+  V  +  +   R 
Sbjct: 71  RSCREFEDQKLTMLEAGCGVGNCLFPLLEEDPNIFAYACDFSPRAIEYVKQNPLYDTERC 130

Query: 127 STFVCDLISDDLSRQISPSSIDIVTM--------------------------ERLTGKD- 159
             F CDL  DDL   + P S+D+V +                          + +  +D 
Sbjct: 131 KVFQCDLTKDDLLDHVPPESVDVVMLIFVLSAVHPDKMHLVLQNIYKVLKPGKSVLFRDY 190

Query: 160 -------------QKISENFYVRGDGTRAFYFSNDFLTSLFKENGFDVEELGLCCKQVEN 206
                         K+ ENFYVR DGTR+++F++DFL  LF + G++        ++  N
Sbjct: 191 GLYDHAMLRFKASSKLGENFYVRQDGTRSYFFTDDFLAQLFMDTGYEEVVNEYVFRETVN 250

Query: 207 RARELVMNRRWVQAVF 222
           +   L + R ++Q+ F
Sbjct: 251 KKEGLCVPRVFLQSKF 266

Probable methyltransferase.
Homo sapiens (taxid: 9606)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: -

>sp|Q6AXU8|METL6_RAT Methyltransferase-like protein 6 OS=Rattus norvegicus GN=Mettl6 PE=2 SV=1

 Score =  144 bits (363), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 85/239 (35%), Positives = 123/239 (51%), Gaps = 46/239 (19%)

Query: 29  VSPFWRDKYEREAKKYWDLFYKRHQDRFFKDRHYLDKEWG-----RYFSGAGRKDVLEVG 83
           VS F + K E+EA+K WDLFYKR+   FFKDRH+  +E+      R + G  +  +LE G
Sbjct: 29  VSAFKQQKLEKEAQKNWDLFYKRNSTNFFKDRHWTTREFEELRSCREYEGQ-KLTLLEAG 87

Query: 84  CGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQIS 143
           CG GN +FPL+    ++F YACDFSPRAV+ V  H  +   R   F CDL  DDL   I 
Sbjct: 88  CGVGNCLFPLLEEDSNIFAYACDFSPRAVDYVKQHPLYNAERCKVFQCDLTRDDLLDHIP 147

Query: 144 PSSIDIVTM---------ERL------------TGKD-------------------QKIS 163
           P S+D VT+         E++             G+                     K+ 
Sbjct: 148 PESVDAVTLIFVLSAVHPEKMHLVLLNVYKVLKPGRSVLFRDYGLNDHAMLRFKAGSKLG 207

Query: 164 ENFYVRGDGTRAFYFSNDFLTSLFKENGFDVEELGLCCKQVENRARELVMNRRWVQAVF 222
           ENFYVR DGTR+++F+++FL  LF + G++        ++  N+   L + R ++Q+ F
Sbjct: 208 ENFYVRQDGTRSYFFTDEFLAKLFVDAGYEEVVNEYVFRETVNKKEGLCVPRVFLQSKF 266

Probable methyltransferase.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q8BVH9|METL6_MOUSE Methyltransferase-like protein 6 OS=Mus musculus GN=Mettl6 PE=2 SV=2

 Score =  142 bits (357), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 84/239 (35%), Positives = 123/239 (51%), Gaps = 46/239 (19%)

Query: 29  VSPFWRDKYEREAKKYWDLFYKRHQDRFFKDRHYLDKEWG-----RYFSGAGRKDVLEVG 83
           VS F + K E+EA+K WDLFYKR+   FFKDRH+  +E+      R + G  +  +LE G
Sbjct: 29  VSAFKQQKLEKEAQKNWDLFYKRNSTNFFKDRHWTTREFEELRSCREYEGQ-KLTLLEAG 87

Query: 84  CGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQIS 143
           CG GN +FPL+    ++F YACDFSPRAV+ V  H  +   R   F CDL  DDL   + 
Sbjct: 88  CGVGNCLFPLLEEDLNLFAYACDFSPRAVDYVKQHPLYNAERCKVFQCDLTRDDLLDHVP 147

Query: 144 PSSIDIVTM---------ERLT------------GKD-------------------QKIS 163
           P S+D VT+         E++             G+                     K+ 
Sbjct: 148 PESVDAVTLIFVLSAVHPEKMRLVLLNVYKVLKPGRSVLFRDYGLNDHAMLRFKAGSKLG 207

Query: 164 ENFYVRGDGTRAFYFSNDFLTSLFKENGFDVEELGLCCKQVENRARELVMNRRWVQAVF 222
           ENFYVR DGTR+++F+++FL  LF + G++        ++  N+   L + R ++Q+ F
Sbjct: 208 ENFYVRQDGTRSYFFTDEFLAQLFVDAGYEEVVNEYVFRETVNKKEGLCVPRVFLQSKF 266

Probable methyltransferase.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q5RDV8|METL6_PONAB Methyltransferase-like protein 6 OS=Pongo abelii GN=METTL6 PE=2 SV=1

 Score =  139 bits (350), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 82/241 (34%), Positives = 121/241 (50%), Gaps = 44/241 (18%)

Query: 26  NTGVSPFWRDKYEREAKKYWDLFYKRHQDRFFKDRHYLDKEWGRYFSGAGRKD----VLE 81
            T VS F + K E+EA+K WDLFYKR+   FFKDRH+  +E+    S    +D    +LE
Sbjct: 26  QTLVSDFKQQKLEQEAQKNWDLFYKRNSTNFFKDRHWTTREFEELRSCREFEDQKLTMLE 85

Query: 82  VGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQ 141
            G G GN +FPL+   P++F YACDFSPRAV  V  +  +   R   F CDL  DDL   
Sbjct: 86  AGRGVGNCLFPLLEEDPNIFAYACDFSPRAVEYVKQNPLYDTERCKVFQCDLTKDDLLDH 145

Query: 142 ISPSSIDIVTM--------------------------ERLTGKD--------------QK 161
           + P S+D+V +                          + +  +D               K
Sbjct: 146 VPPESVDVVMLIFVLSAVHPDKMHLVLQNIYKVLKPGKSVLFRDYGLYDHAMLRFKAGSK 205

Query: 162 ISENFYVRGDGTRAFYFSNDFLTSLFKENGFDVEELGLCCKQVENRARELVMNRRWVQAV 221
           + ENFYVR DGTR+++F+++FL  LF + G++        ++  N+   L + R ++Q+ 
Sbjct: 206 LGENFYVRQDGTRSYFFTDEFLAQLFMDTGYEEVVNEYVFRETVNKKEGLCVPRVFLQSK 265

Query: 222 F 222
           F
Sbjct: 266 F 266

Probable methyltransferase.

Pongo abelii (taxid: 9601)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|O74386|YNVB_SCHPO Uncharacterized methyltransferase C3H7.11 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC3H7.11 PE=3 SV=1

 Score =  127 bits (319), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 81/241 (33%), Positives = 120/241 (49%), Gaps = 45/241 (18%)

Query: 27  TGVSPFWRDKYEREAKKYWDLFYKRHQDRFFKDRHYLDKEWGRYFSGAGRK--DVLEVGC 84
           + +S FW +KY++E+KK WD FYKR++ RFFKDRH+LD+E+  YF    +    +LEVGC
Sbjct: 5   SKLSDFWVEKYKKESKKSWDKFYKRNETRFFKDRHWLDREFDCYFGLPDKLPLTILEVGC 64

Query: 85  GAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISP 144
           G GN ++PL+   P++ +Y CDFSPRA++ V  H  + E RV  FV D+  D L   +  
Sbjct: 65  GVGNLVYPLLEVQPNLKIYCCDFSPRAIDFVKKHSCYNENRVFPFVNDITEDSLLEVLGS 124

Query: 145 SSIDIVT-----------------------------------------MERL--TGKDQK 161
           + ID +T                                          E+   +G    
Sbjct: 125 ACIDTLTAIFVLSAIPREKQLRSIKNLASVIKPGGHLVFRDYCDGDFAQEKFMTSGDPSM 184

Query: 162 ISENFYVRGDGTRAFYFSNDFLTSLFKENGFDVEELGLCCKQVENRARELVMNRRWVQAV 221
           I E  +VR DGT + +F  + +    K  GF +  L    + V+NR R L M R ++Q V
Sbjct: 185 IDEQTFVRQDGTLSLFFREEDIAEWMKSAGFGLVTLDRVNRTVDNRKRNLNMKRTFLQGV 244

Query: 222 F 222
           +
Sbjct: 245 W 245

Probable methyltransferase.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q08641|AB140_YEAST Uncharacterized methyltransferase ABP140 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ABP140 PE=1 SV=3

 Score =  122 bits (305), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 79/243 (32%), Positives = 115/243 (47%), Gaps = 50/243 (20%)

Query: 29  VSPFWRDKYEREAKKYWDLFYKRHQDRFFKDRHYLDKEWGRYFSGAGRKD-----VLEVG 83
           V  F +  Y     +YWD+FYK +++ FFKDR +L  E+   ++   RKD     + E+G
Sbjct: 383 VPEFDKKLYNENPARYWDIFYKNNKENFFKDRKWLQIEFPILYAST-RKDAEPVTIFEIG 441

Query: 84  CGAGNTIFPLIA--AYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDD--LS 139
           CGAGNT FP++      ++ + A DF+PRAV LV   + F        V DL + D  L 
Sbjct: 442 CGAGNTFFPILKDNENENLRIIAADFAPRAVELVKNSEQFNPKYGHATVWDLANPDGNLP 501

Query: 140 RQISPSSIDIVTM----------------------------------------ERLTGKD 159
             + P S+DI  M                                        +    K+
Sbjct: 502 DGVEPHSVDIAVMIFVFSALAPNQWDQAMDNLHKILKPGGKIIFRDYGAYDLTQVRFKKN 561

Query: 160 QKISENFYVRGDGTRAFYFSNDFLTSLFKENGFDVEELGLCCKQVENRARELVMNRRWVQ 219
           + + ENFYVRGDGTR ++FS + L  +F +  F   ++G   + + NR R+L M R WVQ
Sbjct: 562 RILEENFYVRGDGTRVYFFSEEKLREIFTKKYFLENKIGTDRRLLVNRKRQLKMYRCWVQ 621

Query: 220 AVF 222
           AVF
Sbjct: 622 AVF 624

Potential methyltransferase (By similarity). Binds F-actin and shows weak F-actin cross-linking activity.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|A8KBL7|MEL2A_DANRE Methyltransferase-like protein 2-A OS=Danio rerio GN=mettl2a PE=2 SV=1

 Score =  117 bits (293), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 75/265 (28%), Positives = 121/265 (45%), Gaps = 76/265 (28%)

Query: 34  RDKYEREAKKYWDLFYKRHQDRFFKDRHYLDKEW------GRYFSGAGRKD--------- 78
           +++++  A +YW+ FY  H++RFFKDRH+L  E+       ++  GA  K+         
Sbjct: 82  QEEFDNRANEYWNDFYTIHENRFFKDRHWLFTEFPELAPQQKHLRGAEEKESLEHMLNGE 141

Query: 79  -------------------VLEVGCGAGNTIFPLIAAY--PDVFVYACDFSPRAVNLVMT 117
                              +LEVGCG GNT+FP++     P +FVY CDFS  AV+LV +
Sbjct: 142 DISLNPTHDEFPGASASYRILEVGCGVGNTVFPILKTNNDPGLFVYCCDFSSTAVDLVKS 201

Query: 118 HKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM---------ERLT------------ 156
           + ++  +R   FV D+  +     +   S+D++ +         E++             
Sbjct: 202 NPEYDPSRCHAFVHDMSDESGEYPMPDHSLDVIVLIFVLSALHPEKMQKSINRLGRLLKP 261

Query: 157 -------------------GKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGFDVEEL 197
                               K + +SENFYVRGDGTR ++F+ D L  LF   G +  + 
Sbjct: 262 GGVLLLRDYGRYDMAQLRFKKGRCLSENFYVRGDGTRVYFFTQDELHDLFSSAGLEKLQN 321

Query: 198 GLCCKQVENRARELVMNRRWVQAVF 222
            +  +   NR ++L M R WVQ  +
Sbjct: 322 LVDRRLQVNRGKQLTMYRVWVQCKY 346

Probable methyltransferase.

Danio rerio (taxid: 7955)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q86BS6|METL_DROME Methyltransferase-like protein OS=Drosophila melanogaster GN=metl PE=1 SV=2

 Score =  116 bits (290), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 77/258 (29%), Positives = 117/258 (45%), Gaps = 48/258 (18%)

Query: 13  KEEAPKLQIYPTPNTGVSPFWRDKYEREAKKYWDLFYKRHQDRFFKDRHYLDKEWGRYFS 72
           +E A K  +     + +    +++++ +A K+WD FY  H +RFFKDRH+L  E+     
Sbjct: 64  QELAAKAAVAKNSTSKMEAEQKERFQTDAPKFWDSFYGIHDNRFFKDRHWLFTEFPELAP 123

Query: 73  GAGRKDVL------EVGCGAGNTIFPLI--AAYPDVFVYACDFSPRAVNLVMTHKDFTET 124
            A    VL      E+GCG GNTI PL+  ++ P + V+ CDFS RA+ ++ + + F E 
Sbjct: 124 LAADSAVLQPRSIFELGCGVGNTILPLLQYSSEPQLKVFGCDFSARAIEILRSQRQFDEK 183

Query: 125 RVSTFVCDLISDDLSRQISPSSIDIVTM-------------------------------- 152
           R   FV D   D        +S DI+ M                                
Sbjct: 184 RCEVFVMDATLDHWQVPFEENSQDIIVMIFVLSAIEPKKMQRVLDNCYRYLRPGGLLLFR 243

Query: 153 -------ERLTGKDQK-ISENFYVRGDGTRAFYFSNDFLTSLFKENGFDVEELGLCCKQV 204
                   +L  K  K + +NFYVRGDGT  ++F+ + L  +  + G   E+L +  +  
Sbjct: 244 DYGRYDLAQLRFKSGKCMEDNFYVRGDGTMVYFFTEEELRGMMTQAGLQEEQLIVDRRLQ 303

Query: 205 ENRARELVMNRRWVQAVF 222
            NR R L M R W+Q  F
Sbjct: 304 VNRCRGLKMYRVWIQTKF 321

Probable methyltransferase.

Drosophila melanogaster (taxid: 7227)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q9P7L6|METL_SCHPO Uncharacterized methyltransferase-like protein SPBC21C3.07c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC21C3.07c PE=3 SV=2

 Score =  115 bits (289), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 71/235 (30%), Positives = 118/235 (50%), Gaps = 47/235 (20%)

Query: 34  RDKYEREAKKYWDLFYKRHQDRFFKDRHYLDKEWGRYFS----GAGRKDVLEVGCGAGNT 89
           +D Y    ++YWD FY +++ +FF +R ++ +E+          AG K +LE+GCGAGNT
Sbjct: 72  KDAYMTHPERYWDQFYGKNEGKFFMNRRWIAQEFPELLDLLKEDAGEKSILEIGCGAGNT 131

Query: 90  IFPLIA--AYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSI 147
           I+P++      ++ ++A D+S +A+++V  +  +     S  V DL   DL R I  +SI
Sbjct: 132 IWPILKENKNSNLKIFAVDYSEKAIDVVKQNPLYDAKFCSASVWDLAGSDLLRSIEEASI 191

Query: 148 DIVT---------------------------------------MERLTGKDQKI-SENFY 167
           D +T                                       + +L  K  +I SENFY
Sbjct: 192 DAITLIFCFSALSPDQWQQAIENLYRLLKPGGLILFRDYGRLDLTQLRAKKNRILSENFY 251

Query: 168 VRGDGTRAFYFSNDFLTSLFKENGFDVEELGLCCKQVENRARELVMNRRWVQAVF 222
           +RGDGTR +Y +N+ L  +F +N F + + G+  + + NR + + M R W+QA F
Sbjct: 252 IRGDGTRVYYMTNEELVDVFGKN-FKIIQNGVDKRLIVNRKKRVKMYRCWLQAKF 305

Potential methyltransferase.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q5M8E6|METL2_XENTR Methyltransferase-like protein 2 OS=Xenopus tropicalis GN=mettl2 PE=2 SV=1

 Score =  114 bits (284), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 78/267 (29%), Positives = 121/267 (45%), Gaps = 78/267 (29%)

Query: 34  RDKYEREAKKYWDLFYKRHQDRFFKDRHYLDKEW-----------------GRYFSGAG- 75
           +++YE +A  +WD FY  H++RFFKDRH+L  E+                 G+     G 
Sbjct: 55  QEEYENKASNFWDDFYTIHENRFFKDRHWLFTEFPELSSRSSTQTGTESQEGQVMQLNGC 114

Query: 76  -----RKDV-------------LEVGCGAGNTIFPLIA--AYPDVFVYACDFSPRAVNLV 115
                R DV             +EVGCG GNT+FP++     P +FVY CDFS  AV LV
Sbjct: 115 QEETERADVENPFPGASATYRIMEVGCGVGNTVFPILQNNTDPGLFVYCCDFSSTAVELV 174

Query: 116 MTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM----------------ERLTG-- 157
            +++ ++ +R   FV D+  +  S  +   S+D++ +                 RL+   
Sbjct: 175 KSNELYSPSRCFAFVHDVSDEQSSFPMPEHSLDVIVLIFVLSAINPAKMQNVISRLSSLL 234

Query: 158 ----------------------KDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGFDVE 195
                                 K + ++ENFYVRGDGTR ++F+ D L +LF   G    
Sbjct: 235 KPGGCILLRDYGRYDMAQLRFKKGRCLAENFYVRGDGTRVYFFTQDDLDTLFISAGLQKV 294

Query: 196 ELGLCCKQVENRARELVMNRRWVQAVF 222
           +  +  +   NR ++L M R W+Q  +
Sbjct: 295 QNTVDRRLQVNRGKQLTMYRVWIQCKY 321

Probable methyltransferase.

Xenopus tropicalis (taxid: 8364)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	523
343887267	564	methyltransferase [Citrus unshiu]	1.0	0.927	0.914	0.0
298204822	562	unnamed protein product [Vitis vinifera]	0.975	0.907	0.667	0.0
224088796	557	predicted protein [Populus trichocarpa]	0.963	0.904	0.658	0.0
225470654	562	PREDICTED: uncharacterized protein LOC10	0.975	0.907	0.663	0.0
359490040	562	PREDICTED: uncharacterized protein LOC10	0.975	0.907	0.660	0.0
298204810	556	unnamed protein product [Vitis vinifera]	0.954	0.897	0.661	0.0
449447139	554	PREDICTED: uncharacterized protein LOC10	0.952	0.898	0.617	0.0
297822127	564	hypothetical protein ARALYDRAFT_481476 [	0.978	0.907	0.589	0.0
356554100	585	PREDICTED: uncharacterized protein LOC10	0.969	0.866	0.603	0.0
42570317	565	S-adenosyl-L-methionine-dependent methyl	0.965	0.893	0.590	0.0

>gi|343887267|dbj|BAK61813.1| methyltransferase [Citrus unshiu]

 Score = 1059 bits (2738), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 516/564 (91%), Positives = 519/564 (92%), Gaps = 41/564 (7%)

Query: 1   MESSNAPNAGIGKEEAPKLQIYPTPNTGVSPFWRDKYEREAKKYWDLFYKRHQDRFFKDR 60
           MESSNAPNAGIGKEEAPKLQIYPTPNTGVSPFWRDKYEREAKKYWDLFYKRHQDRFFKDR
Sbjct: 1   MESSNAPNAGIGKEEAPKLQIYPTPNTGVSPFWRDKYEREAKKYWDLFYKRHQDRFFKDR 60

Query: 61  HYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKD 120
           HYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFV+ACDFSPRAVNLVMTHKD
Sbjct: 61  HYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVHACDFSPRAVNLVMTHKD 120

Query: 121 FTETRVSTFVCDLISDDLSRQISPSSIDIVTM---------------------------- 152
           FTET VSTFVCDL SDDLSRQISPSSIDIVTM                            
Sbjct: 121 FTETHVSTFVCDLTSDDLSRQISPSSIDIVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGY 180

Query: 153 -------------ERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGFDVEELGL 199
                        ERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGFDVEELGL
Sbjct: 181 VLFRDYAIGDLAQERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGFDVEELGL 240

Query: 200 CCKQVENRARELVMNRRWVQAVFCSSGGATSSSEEASVRVDIFNQAIIEPDVAANTLKEP 259
           CCKQVENRARELVMNRRWVQAVFCSSGGATSSSEEAS++VDIFNQAIIEPDVAANTLKEP
Sbjct: 241 CCKQVENRARELVMNRRWVQAVFCSSGGATSSSEEASIKVDIFNQAIIEPDVAANTLKEP 300

Query: 260 MNDSEVDMSEGVAFEMFGLSSFEDNEMIEVNLRDRSFKIEVLSKEYQHTCRSTGLMLWES 319
           MNDSEVDMSEGVAFEMFGLSSFEDNEMIEVNLRD SFKIEVLSKEYQHTCRSTGLMLWES
Sbjct: 301 MNDSEVDMSEGVAFEMFGLSSFEDNEMIEVNLRDHSFKIEVLSKEYQHTCRSTGLMLWES 360

Query: 320 AHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVT 379
           AHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVT
Sbjct: 361 AHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVT 420

Query: 380 ANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKEL 439
           ANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKEL
Sbjct: 421 ANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKEL 480

Query: 440 TASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLVDKWPSKNSASPSESIISS 499
           TASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLVDKWPSKNSASPSESII S
Sbjct: 481 TASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLVDKWPSKNSASPSESIIGS 540

Query: 500 WFSENGHEVYLPSPALNIMYFQVE 523
           WFSENGHEVYLPSPALNIMYFQVE
Sbjct: 541 WFSENGHEVYLPSPALNIMYFQVE 564

Source: Citrus unshiu

Species: Citrus unshiu

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|298204822|emb|CBI25655.3| unnamed protein product [Vitis vinifera]

 Score =  748 bits (1930), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/565 (66%), Positives = 439/565 (77%), Gaps = 55/565 (9%)

Query: 11  IGKEEAPKLQIYPTPNTGVSPFWRDKYEREAKKYWDLFYKRHQDRFFKDRHYLDKEWGRY 70
           + +++  +LQIY T +TGVSPFWR+KYEREAKKYWD+FYKRHQDRFFKDRHYLDKEWG Y
Sbjct: 1   MAEQQPSRLQIYSTSSTGVSPFWREKYEREAKKYWDVFYKRHQDRFFKDRHYLDKEWGHY 60

Query: 71  FSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFV 130
           FSGAGRK +LEVGCGAGNTIFPL+A YPD+FV+ACDFSPRAV+LV THKDFTE RVS FV
Sbjct: 61  FSGAGRKVILEVGCGAGNTIFPLVATYPDIFVHACDFSPRAVDLVKTHKDFTENRVSAFV 120

Query: 131 CDLISDDLSRQISPSSIDIVTM-------------------------------------- 152
           CDL  DDLS  ISPSS+DI+TM                                      
Sbjct: 121 CDLTVDDLSEHISPSSVDIITMIFVLSAVSPEKMPLVLQNIRKVIKPNGYVLFRDYATGD 180

Query: 153 ---ERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGFDVEELGLCCKQVENRAR 209
              ER + KDQKISENFYVRGDGTRAFYFS++FLTSLFKENGFDVEELG CCKQVENR+R
Sbjct: 181 LAQERFSCKDQKISENFYVRGDGTRAFYFSDEFLTSLFKENGFDVEELGFCCKQVENRSR 240

Query: 210 ELVMNRRWVQAVFCSSGGATSSSEEASVRVDIFNQAIIEPDVAA-----------NTLKE 258
           E+VMNRRW+QAVF SS G  SS  E++ + D+  Q  +EP  ++           N+ KE
Sbjct: 241 EIVMNRRWLQAVFHSSDGLKSSYTESAFKFDL-CQGNVEPISSSRNSDQLCRSEENSAKE 299

Query: 259 PMNDSEVDMSEGVAFEMFGLSSFEDNEMIEVNLRDRSFKIEVLSKEYQHTCRSTGLMLWE 318
             ND EVDMSEG+AFEMFG+S   D E+IEV+  + +FKI+VLSKEYQHTC+STGLMLWE
Sbjct: 300 LANDFEVDMSEGMAFEMFGISHSSD-EIIEVDAGNWNFKIKVLSKEYQHTCKSTGLMLWE 358

Query: 319 SAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNV 378
           SA LMA+VLA+NPT+VAGK+VLELGCGCGGICSMV+A SAD VV+TDGD+ ALD+LA+NV
Sbjct: 359 SARLMASVLAQNPTVVAGKRVLELGCGCGGICSMVSARSADFVVSTDGDAKALDMLAENV 418

Query: 379 TANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKE 438
            +NL+ PFL KLITKRLEWGNRDHIEAIKE N+EGFEVI+GTDV+YIPEAILPLFATAKE
Sbjct: 419 ASNLQKPFLDKLITKRLEWGNRDHIEAIKELNDEGFEVIIGTDVTYIPEAILPLFATAKE 478

Query: 439 LTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLVDKWPSKNSASPSESIIS 498
           L  SSN+  RE  +PA ILCH+ R+VDEPS+LSAA++ GFRLVDKWP+    S S+SIIS
Sbjct: 479 LI-SSNRDAREIWKPALILCHVLRRVDEPSILSAASKFGFRLVDKWPTSIPTSSSQSIIS 537

Query: 499 SWFSENGHEVYLPSPALNIMYFQVE 523
           SWF E   E  +P+ ALNIMYF  E
Sbjct: 538 SWFLEKSSEECIPTTALNIMYFHSE 562

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224088796|ref|XP_002308544.1| predicted protein [Populus trichocarpa] gi|222854520|gb|EEE92067.1| predicted protein [Populus trichocarpa]

 Score =  745 bits (1924), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/547 (65%), Positives = 425/547 (77%), Gaps = 43/547 (7%)

Query: 18  KLQIYPTPNTGVSPFWRDKYEREAKKYWDLFYKRHQDRFFKDRHYLDKEWGRYFSGAGRK 77
           K QIY T NTGV+PFW++KYER+AKKYWD+FYKRHQD+FFKDRHYLDKEWG+YF+G  R+
Sbjct: 13  KFQIYSTANTGVTPFWKEKYERDAKKYWDVFYKRHQDKFFKDRHYLDKEWGQYFAGKERR 72

Query: 78  DVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDD 137
            VLEVGCGAGNTIFPL+A YP++FV+ACDFSPRAVNLV THKD+ ET V  FVCDL  DD
Sbjct: 73  VVLEVGCGAGNTIFPLVATYPNIFVHACDFSPRAVNLVKTHKDYLETCVGAFVCDLTVDD 132

Query: 138 LSRQISPSSIDIVTM-----------------------------------------ERLT 156
           LS++ISPSS+DIVTM                                         ERLT
Sbjct: 133 LSKEISPSSVDIVTMIFVLSAVSPEKMPLVLQNIKKVMKPNGYVLLRDYAVGDLAQERLT 192

Query: 157 GKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGFDVEELGLCCKQVENRARELVMNRR 216
            KDQ+ISENFYVRGDGTRAFYFSN+FLTSLFK+NGFDVEELGLCCKQVENR+RE+VMNRR
Sbjct: 193 SKDQQISENFYVRGDGTRAFYFSNEFLTSLFKDNGFDVEELGLCCKQVENRSREIVMNRR 252

Query: 217 WVQAVFCSSGGATSSSEEASVRVDIFNQAIIEPDVAANTLKEPMNDSEVDMSEGVAFEMF 276
           W+QAVF  S  +  S  + S   +   Q  ++ +V  +T + P N+ E+DMSEGVA EMF
Sbjct: 253 WIQAVFRFSDSSNYSVSKESAIKEALCQENVKSNVKESTSQYPSNNFEIDMSEGVAAEMF 312

Query: 277 GLSSFEDNEMIEVNLRDRSFKIEVLSKEYQHTCRSTGLMLWESAHLMAAVLARNPTIVAG 336
           G+S   DNE+I V+LRD++FKI VLSKEYQHTC+STGLMLWESA +MA VLA NPTIV G
Sbjct: 313 GISPSNDNEVIHVDLRDQNFKINVLSKEYQHTCKSTGLMLWESARMMAMVLAVNPTIVEG 372

Query: 337 KKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLE 396
           +KVLELGCGCGGICSMV+A SADLVVATDGD+ AL+LL+QNV +NL+ P LAKLI KRL 
Sbjct: 373 RKVLELGCGCGGICSMVSAKSADLVVATDGDTKALELLSQNVASNLRQPSLAKLIMKRLV 432

Query: 397 WGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFI 456
           WGN +HIEAIK+ N  GFEVI+GTDV+YIPEAILPLFATAKEL +        DQ+PA I
Sbjct: 433 WGNTEHIEAIKDLNPGGFEVIIGTDVTYIPEAILPLFATAKELISCDRNG--GDQEPALI 490

Query: 457 LCHIFRQVDEPSMLSAATQCGFRLVDKWPSKNSASPSESIISSWFSENGHEVYLPSPALN 516
           LCHIFR+VDEPS+LSAA+Q GF+LVDKWP    ++PS+SI+ SWF ENG E Y+P+ ALN
Sbjct: 491 LCHIFRRVDEPSLLSAASQYGFKLVDKWPLGIPSNPSQSIVGSWFPENGREEYIPNAALN 550

Query: 517 IMYFQVE 523
           IMYF ++
Sbjct: 551 IMYFHLQ 557

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225470654|ref|XP_002268214.1| PREDICTED: uncharacterized protein LOC100258883 [Vitis vinifera]

 Score =  743 bits (1917), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/565 (66%), Positives = 437/565 (77%), Gaps = 55/565 (9%)

Query: 11  IGKEEAPKLQIYPTPNTGVSPFWRDKYEREAKKYWDLFYKRHQDRFFKDRHYLDKEWGRY 70
           + +++  +LQIY T +TGVSPFWR+KYEREAKKYWD+FYKRHQDRFFKDRHYLDKEWG Y
Sbjct: 1   MAEQQPSRLQIYSTSSTGVSPFWREKYEREAKKYWDVFYKRHQDRFFKDRHYLDKEWGHY 60

Query: 71  FSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFV 130
           FS  GRK +LEVGCGAGNTIFPL+A YPD+FV+ACDFSPRAV+LV THKDFTE RVS FV
Sbjct: 61  FSVTGRKVILEVGCGAGNTIFPLVATYPDIFVHACDFSPRAVDLVKTHKDFTENRVSAFV 120

Query: 131 CDLISDDLSRQISPSSIDIVTM-------------------------------------- 152
           CDL  DDLS  ISPSS+DI+TM                                      
Sbjct: 121 CDLTVDDLSEHISPSSVDIITMIFVLSAVSPEKMPLVLQNIRKVIKPNGYVLFRDYATGD 180

Query: 153 ---ERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGFDVEELGLCCKQVENRAR 209
              ER + KDQKISENFYVRGDGTRAFYFS++FLTSLFKENGFDVEELG CCKQVENR+R
Sbjct: 181 LAQERFSCKDQKISENFYVRGDGTRAFYFSDEFLTSLFKENGFDVEELGFCCKQVENRSR 240

Query: 210 ELVMNRRWVQAVFCSSGGATSSSEEASVRVDIFNQAIIEPDVAA-----------NTLKE 258
           E+VMNRRW+QAVF SS G  SS  E++ + D+  Q  +EP  ++           N+ KE
Sbjct: 241 EIVMNRRWLQAVFHSSDGLKSSYTESAFKFDL-CQGNVEPISSSRNSDQLCRSEENSAKE 299

Query: 259 PMNDSEVDMSEGVAFEMFGLSSFEDNEMIEVNLRDRSFKIEVLSKEYQHTCRSTGLMLWE 318
             ND EVDMSEG+AFEMFG+S   D E+IEV+  + +FKI+VLSKEYQHTC+STGLMLWE
Sbjct: 300 LANDFEVDMSEGMAFEMFGISHSSD-EIIEVDAGNWNFKIKVLSKEYQHTCKSTGLMLWE 358

Query: 319 SAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNV 378
           SA LMA+VLA+NPT+VAGK+VLELGCGCGGICSMV+A SAD VV+TDGD+ ALD+LA+NV
Sbjct: 359 SARLMASVLAQNPTVVAGKRVLELGCGCGGICSMVSARSADFVVSTDGDAKALDMLAENV 418

Query: 379 TANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKE 438
            +NL+ PFL KLITKRLEWGNRDHIEAIKE N+EGFEVI+GTDV+YIPEAILPLFATAKE
Sbjct: 419 ASNLQKPFLDKLITKRLEWGNRDHIEAIKELNDEGFEVIIGTDVTYIPEAILPLFATAKE 478

Query: 439 LTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLVDKWPSKNSASPSESIIS 498
           L  SSN+  RE  +PA ILCH+ R+VDEPS+LSAA++ GFRLVDKWP+    S S+SIIS
Sbjct: 479 LI-SSNRDAREIWKPALILCHVLRRVDEPSILSAASKFGFRLVDKWPTSIPTSSSQSIIS 537

Query: 499 SWFSENGHEVYLPSPALNIMYFQVE 523
           SWF E   E  +P+ ALNIMYF  E
Sbjct: 538 SWFLEKSSEECIPTTALNIMYFHSE 562

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359490040|ref|XP_002264245.2| PREDICTED: uncharacterized protein LOC100260809 [Vitis vinifera]

 Score =  738 bits (1906), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/565 (66%), Positives = 435/565 (76%), Gaps = 55/565 (9%)

Query: 11  IGKEEAPKLQIYPTPNTGVSPFWRDKYEREAKKYWDLFYKRHQDRFFKDRHYLDKEWGRY 70
           + +++  +LQIY T +TGVSPFWR+KYEREAKKYWD+FYKRHQDRFFKDRHYLDKEWG Y
Sbjct: 1   MAEQQPSRLQIYSTSSTGVSPFWREKYEREAKKYWDVFYKRHQDRFFKDRHYLDKEWGHY 60

Query: 71  FSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFV 130
           FS  GRK +LEVGCGAGNTIFPL+A YPD+FV+ACDFSPRAV+LV THKDFTE RVS FV
Sbjct: 61  FSVTGRKVILEVGCGAGNTIFPLVATYPDIFVHACDFSPRAVDLVKTHKDFTENRVSAFV 120

Query: 131 CDLISDDLSRQISPSSIDIVTM-------------------------------------- 152
           CDL  DDLS  ISPSS+DI+TM                                      
Sbjct: 121 CDLTVDDLSEHISPSSVDIITMIFVLSAVSPEKMPLVLQNIRKVIKPNGYVLFRDYATGD 180

Query: 153 ---ERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGFDVEELGLCCKQVENRAR 209
              ER + KDQKISENFYVRGDGTRAFYFS++FLTSLFKENGFDVEELG CCKQVENR+R
Sbjct: 181 LAQERFSCKDQKISENFYVRGDGTRAFYFSDEFLTSLFKENGFDVEELGFCCKQVENRSR 240

Query: 210 ELVMNRRWVQAVFCSSGGATSSSEEASVRVDIFNQAIIEPDVAA-----------NTLKE 258
           E+VMNRRW+QAVF  S G  SS  E++++ D+  Q  +EP  ++           N+ KE
Sbjct: 241 EIVMNRRWLQAVFHFSDGLKSSYTESAIKFDL-CQGNVEPISSSRNSDQLCRSEENSAKE 299

Query: 259 PMNDSEVDMSEGVAFEMFGLSSFEDNEMIEVNLRDRSFKIEVLSKEYQHTCRSTGLMLWE 318
             ND EVDMSEG+AFEMFG+S   D E+IEV+  + +FKI+VLSKEYQHTC+STGLMLWE
Sbjct: 300 LANDFEVDMSEGMAFEMFGISHSSD-EIIEVDAGNWNFKIKVLSKEYQHTCKSTGLMLWE 358

Query: 319 SAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNV 378
           SA LMA+VLA+NPT+V GK+VLELGCGCGGICSMV+A SAD VVATDGD+ ALD+LA+NV
Sbjct: 359 SARLMASVLAQNPTVVTGKRVLELGCGCGGICSMVSARSADFVVATDGDAKALDMLAENV 418

Query: 379 TANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKE 438
            +NL+ PFL KLITKRLEWGNRDHIEAIKE N+EGFEVI+GT V+YIPEAILPLFATAKE
Sbjct: 419 VSNLQKPFLDKLITKRLEWGNRDHIEAIKELNDEGFEVIIGTGVTYIPEAILPLFATAKE 478

Query: 439 LTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLVDKWPSKNSASPSESIIS 498
           L  SSN+  RE  +PA ILCH+ R+VDEPS+LSAA++ GFRLVDKWP+    S S+SIIS
Sbjct: 479 LI-SSNRDAREIWKPALILCHVLRRVDEPSILSAASKFGFRLVDKWPTSIPTSSSQSIIS 537

Query: 499 SWFSENGHEVYLPSPALNIMYFQVE 523
           SWF E   E  +P+ ALNIMYF  E
Sbjct: 538 SWFLEKSSEECIPTTALNIMYFHSE 562

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|298204810|emb|CBI25643.3| unnamed protein product [Vitis vinifera]

 Score =  729 bits (1882), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/559 (66%), Positives = 429/559 (76%), Gaps = 60/559 (10%)

Query: 11  IGKEEAPKLQIYPTPNTGVSPFWRDKYEREAKKYWDLFYKRHQDRFFKDRHYLDKEWGRY 70
           + +++  +LQIY T +TGVSPFWR+KYEREAKKYWD+FYKRHQDRFFKDRHYLDKEWG Y
Sbjct: 1   MAEQQPSRLQIYSTSSTGVSPFWREKYEREAKKYWDVFYKRHQDRFFKDRHYLDKEWGHY 60

Query: 71  FSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFV 130
           FSGAGRK +LEVGCGAGNTIFPL+A YPD+FV+ACDFSPRAV+LV THKDFTE RVS FV
Sbjct: 61  FSGAGRKVILEVGCGAGNTIFPLVATYPDIFVHACDFSPRAVDLVKTHKDFTENRVSAFV 120

Query: 131 CDLISDDLSRQISPSSIDIVTM-------------------------------------- 152
           CDL  DDLS  ISPSS+DI+TM                                      
Sbjct: 121 CDLTVDDLSEHISPSSVDIITMIFVLSAVSPEKMPLVLQNIRKVIKPNGYVLFRDYATGD 180

Query: 153 ---ERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGFDVEELGLCCKQVENRAR 209
              ER + KDQKISENFYVRGDGTRAFYFS++FLTSLFKENGFDVEELG CCKQVENR+R
Sbjct: 181 LAQERFSCKDQKISENFYVRGDGTRAFYFSDEFLTSLFKENGFDVEELGFCCKQVENRSR 240

Query: 210 ELVMNRRWVQAVFCSSGG-----ATSSSEEASVRVDIFNQAIIEPDVAANTLKEPMNDSE 264
           E+VMNRRW+QAVF  S G     ++S + +   R +             N+ KE  ND E
Sbjct: 241 EIVMNRRWLQAVFHFSDGNVEPISSSRNSDQLCRSE------------ENSAKELANDFE 288

Query: 265 VDMSEGVAFEMFGLSSFEDNEMIEVNLRDRSFKIEVLSKEYQHTCRSTGLMLWESAHLMA 324
           VDMSEG+AFEMFG+S   D E+IEV+  + +FKI+VLSKEYQHTC+STGLMLWESA LMA
Sbjct: 289 VDMSEGMAFEMFGISHSSD-EIIEVDAGNWNFKIKVLSKEYQHTCKSTGLMLWESARLMA 347

Query: 325 AVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKP 384
           +VLA+NPT+V GK+VLELGCGCGGICSMV+A SAD VVATDGD+ ALD+LA+NV +NL+ 
Sbjct: 348 SVLAQNPTVVTGKRVLELGCGCGGICSMVSARSADFVVATDGDAKALDMLAENVVSNLQK 407

Query: 385 PFLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSN 444
           PFL KLITKRLEWGNRDHIEAIKE N+EGFEVI+GT V+YIPEAILPLFATAKEL  SSN
Sbjct: 408 PFLDKLITKRLEWGNRDHIEAIKELNDEGFEVIIGTGVTYIPEAILPLFATAKELI-SSN 466

Query: 445 KSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLVDKWPSKNSASPSESIISSWFSEN 504
           +  RE  +PA ILCH+ R+VDEPS+LSAA++ GFRLVDKWP+    S S+SIISSWF E 
Sbjct: 467 RDAREIWKPALILCHVLRRVDEPSILSAASKFGFRLVDKWPTSIPTSSSQSIISSWFLEK 526

Query: 505 GHEVYLPSPALNIMYFQVE 523
             E  +P+ ALNIMYF  E
Sbjct: 527 SSEECIPTTALNIMYFHSE 545

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449447139|ref|XP_004141326.1| PREDICTED: uncharacterized protein LOC101211005 [Cucumis sativus] gi|449525200|ref|XP_004169606.1| PREDICTED: uncharacterized LOC101211005 [Cucumis sativus]

 Score =  682 bits (1759), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/549 (61%), Positives = 411/549 (74%), Gaps = 51/549 (9%)

Query: 16  APKLQIYPTPNTGVSPFWRDKYEREAKKYWDLFYKRHQDRFFKDRHYLDKEWGRYFSGAG 75
           A K+QIYPT +TGVSPFWR+KYE++AKKYWD+FYK+HQDRFFKDRHYLDKEWG+YF    
Sbjct: 15  AQKIQIYPTSSTGVSPFWREKYEKDAKKYWDIFYKKHQDRFFKDRHYLDKEWGQYFCVEE 74

Query: 76  RKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLIS 135
           RK VLE+GCGAGNT+FPLIA YP+VF++ACDFSPRAVNLV THKDF E+RV+ FVCDL +
Sbjct: 75  RKVVLEIGCGAGNTVFPLIATYPNVFIHACDFSPRAVNLVKTHKDFNESRVAAFVCDLTA 134

Query: 136 DDLSRQISPSSIDIVTM-----------------------------------------ER 154
           DD+S  ISPSSID+V M                                         ER
Sbjct: 135 DDVSNHISPSSIDVVMMIFVLSAVSPEKMSLVLQNVKKVLKPTGHVLFRDYATGDLAQER 194

Query: 155 LTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGFDVEELGLCCKQVENRARELVMN 214
              KDQKISENFYVRGDGTRAFYFSN+FLTS+FK NGFDV+EL +CCKQVENR+REL+MN
Sbjct: 195 FDCKDQKISENFYVRGDGTRAFYFSNEFLTSMFKANGFDVKELNVCCKQVENRSRELIMN 254

Query: 215 RRWVQAVFCSSGGATSSSEEASVRVDIFNQAIIEPDVAANTLKEPMNDSEVDMSEGVAFE 274
           RRWVQAVF  S  AT    E  +      Q   EP    N  + P+ND E+D SEGVA +
Sbjct: 255 RRWVQAVFSVSEFATP---EVKLTAGFSGQVETEPSSKENCSEVPVNDFELDFSEGVAID 311

Query: 275 MFGLSSFEDNEMIEVNLRDRSFKIEVLSKEYQHTCRSTGLMLWESAHLMAAVLARNPTIV 334
           MFG+   +DNE++EV++R  +FKI+VLS+E+QHTC+STGLMLWESA LMA+VLA NPTI 
Sbjct: 312 MFGIPPSQDNEIVEVDVRGWNFKIKVLSREFQHTCKSTGLMLWESARLMASVLAENPTIC 371

Query: 335 AGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKR 394
           AGK+VLELGCGCGGICSMVA GSA+LVVATDGDS AL+LL+QNV +NL P FL KLIT+R
Sbjct: 372 AGKRVLELGCGCGGICSMVAVGSANLVVATDGDSSALNLLSQNVNSNLDPHFLTKLITER 431

Query: 395 LEWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPA 454
           LEWGN  HIE I+E + EGF+VI+GTDV+Y+ EAILPLF+TAKEL +SS     +D + A
Sbjct: 432 LEWGNSIHIETIREISEEGFDVIIGTDVTYVAEAILPLFSTAKELISSS-----KDSESA 486

Query: 455 FILCHIFRQVDEPSMLSAATQCGFRLVDKWPSKNSASPSESIISSWFSENGHEVYLPSPA 514
            I CH+ R+VDEP+++S A Q GFRL D W +  S+  S+SI+SSWF++   ++  PS A
Sbjct: 487 LIFCHVLRRVDEPTIVSTAHQFGFRLADSWTAGVSSKSSQSIVSSWFADRDWDI--PSTA 544

Query: 515 LNIMYFQVE 523
           LNIMYF ++
Sbjct: 545 LNIMYFLLD 553

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297822127|ref|XP_002878946.1| hypothetical protein ARALYDRAFT_481476 [Arabidopsis lyrata subsp. lyrata] gi|297324785|gb|EFH55205.1| hypothetical protein ARALYDRAFT_481476 [Arabidopsis lyrata subsp. lyrata]

 Score =  666 bits (1719), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/558 (58%), Positives = 399/558 (71%), Gaps = 46/558 (8%)

Query: 11  IGKEEAP--KLQIYPTPNTGVSPFWRDKYEREAKKYWDLFYKRHQDRFFKDRHYLDKEWG 68
           I +++ P  KLQIYPT N GVSPFWR+KYER+AKKYWD+FYK H DRFFKDRHYLDKEW 
Sbjct: 8   IEEQQKPIQKLQIYPTANAGVSPFWREKYERDAKKYWDIFYKHHGDRFFKDRHYLDKEWN 67

Query: 69  RYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVST 128
            YFSG+G+K +LEVGCGAGNTIFPLIA YPD+FVYACDFSPRAV LV  H ++TETRV  
Sbjct: 68  SYFSGSGKKVILEVGCGAGNTIFPLIATYPDIFVYACDFSPRAVELVKAHDEYTETRVCA 127

Query: 129 FVCDLISDDLSRQISPSSIDIVTM------------------------------------ 152
           F CDL  D L + ISPSS+DIVTM                                    
Sbjct: 128 FACDLTGDGLDKHISPSSVDIVTMIFVLSAVSPEKMASVLQNIKKVLKPNGCILFRDYAV 187

Query: 153 -----ERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGFDVEELGLCCKQVENR 207
                ER +GKDQKISENFYVRGDGTRAFYFSN+FL +LF E GF+VE+L +CCKQVENR
Sbjct: 188 GDLAQERFSGKDQKISENFYVRGDGTRAFYFSNEFLETLFSEQGFEVEKLDVCCKQVENR 247

Query: 208 ARELVMNRRWVQAVFCSSGGATSSSEEAS-VRVDIFNQA-IIEPDVAANTLKEPMNDSEV 265
           +RELVMNRRWVQA F  S G  +  +  S  ++D   Q   I+        KE ++++++
Sbjct: 248 SRELVMNRRWVQATFRRSHGNQNPGDSLSPAKLDKSEQHDSIQSKSEEQERKEIIDNTDI 307

Query: 266 DMSEGVAFEMFGLSSFEDNEMIEVNLRDRSFKIEVLSKEYQHTCRSTGLMLWESAHLMAA 325
           D+S+G+A EMFG S    +EM  V LRD  FKI++LSKEYQHTC+STGLMLWESA LMA+
Sbjct: 308 DISDGLAMEMFGASP-SSHEMTVVKLRDSDFKIKLLSKEYQHTCKSTGLMLWESARLMAS 366

Query: 326 VLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPP 385
           VL RNP IV+GK+VLELGCGC GICSMVAA SA+LVVATD D+ AL LL +N+T NL+  
Sbjct: 367 VLDRNPNIVSGKRVLELGCGCTGICSMVAARSANLVVATDADTKALTLLTENITMNLQSS 426

Query: 386 FLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNK 445
            L KL T  LEWGN++H E+IK    EGFEVI+GTDV+Y+ EAI+PLF TAKEL      
Sbjct: 427 LLGKLKTGVLEWGNKEHTESIKRLACEGFEVIIGTDVTYVAEAIIPLFETAKELILRKMG 486

Query: 446 SLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLVDKWPSKNSASPSESIISSWFSENG 505
            L   ++PA ILCH+FR+VDEPS+LSAA++ GF+L D+W + +  SP  +II SWFSE  
Sbjct: 487 DLEMQEKPALILCHVFRRVDEPSLLSAASKYGFKLADRWAANSMESPIGNIIDSWFSEKD 546

Query: 506 HEVYLPSPALNIMYFQVE 523
               +PS AL+I+YFQ+E
Sbjct: 547 LVAEIPSSALHILYFQME 564

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356554100|ref|XP_003545387.1| PREDICTED: uncharacterized protein LOC100789229 [Glycine max]

 Score =  659 bits (1701), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/555 (60%), Positives = 406/555 (73%), Gaps = 48/555 (8%)

Query: 12  GKEEAP----KLQIYPTPNTGVSPFWRDKYEREAKKYWDLFYKRHQDRFFKDRHYLDKEW 67
           G ++AP    +LQIYP  N+GVSPFWR+KYEREAK+YWD+FYKRH+DRFFKDRHYLDKEW
Sbjct: 30  GDQKAPPQTQRLQIYPNTNSGVSPFWREKYEREAKRYWDVFYKRHKDRFFKDRHYLDKEW 89

Query: 68  GRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVS 127
           G YFSG GRK +LEVGCGAGNTIFP+IA+ PD FVYACDFSPRA+ LV TH+DF E+ VS
Sbjct: 90  GEYFSGGGRKVILEVGCGAGNTIFPVIASNPDAFVYACDFSPRAIELVKTHEDFKESHVS 149

Query: 128 TFVCDLISDDLSRQISPSSIDIVTM----------------------------------- 152
            FV DL +DDL  +I PSS+DIVTM                                   
Sbjct: 150 AFVSDLTADDLCNEILPSSVDIVTMIFMLSAVSPEKMPLVLQNIRKVIKPNGYVLFRDYA 209

Query: 153 ------ERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGFDVEELGLCCKQVEN 206
                 ER + KDQKIS+NFYVRGDGTRA+YFSN+FLT+LFKENGFDV +  + CKQVEN
Sbjct: 210 TGDLAQERFSSKDQKISDNFYVRGDGTRAYYFSNEFLTNLFKENGFDVHKHHVYCKQVEN 269

Query: 207 RARELVMNRRWVQAVFCSSGGATSSSEEASVRVDIFNQAIIEPDVAANTLKEPMNDSEVD 266
           R+REL+MNRRWVQAVF     +++SS       +  +      ++  N+L   +NDS VD
Sbjct: 270 RSRELIMNRRWVQAVF-RVSDSSNSSSCIGAEANHLDSGNDNKEIKKNSLNGGLNDSAVD 328

Query: 267 MSEGVAFEMFGLSSFEDNEMIEVNLRDRSFKIEVLSKEYQHTCRSTGLMLWESAHLMAAV 326
           +SEGVA +MFG+    + E+IE+NLR  +FKI +LSKEYQHTC+STGLMLWESA LMA++
Sbjct: 329 LSEGVAVDMFGVLPSNEYEIIEINLRGWNFKISLLSKEYQHTCKSTGLMLWESARLMASI 388

Query: 327 LARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPF 386
           LA NP IVAGK+VLELGCG GGICSM+AA  ADLVVATDGD   LD+L +NV +N++P  
Sbjct: 389 LAENPNIVAGKRVLELGCGSGGICSMIAARDADLVVATDGDGFTLDILTKNVASNIEPSL 448

Query: 387 LAKLITKRLEWGNRDHIEAIKE-ENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNK 445
           L KL TK+LEWGN+DHIE+IKE  +N GF+VI+GTDV+YIP+AILPLFATAKEL A S  
Sbjct: 449 LTKLTTKKLEWGNKDHIESIKEVVSNGGFDVIIGTDVTYIPDAILPLFATAKELIAPSGN 508

Query: 446 SLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLVDKWPSKNSASPSESIISSWFSENG 505
              +D  PA ILCHIFR+VDEP++LSAA   GFRLVDKWP+  S + S  II +WF +N 
Sbjct: 509 K-EDDNVPALILCHIFRRVDEPTLLSAAAHFGFRLVDKWPAGTSTNLSHRIIGNWFVDND 567

Query: 506 HEVYLPSPALNIMYF 520
            +  LPS ALNI+ F
Sbjct: 568 LKDDLPSTALNILLF 582

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42570317|ref|NP_850075.2| S-adenosyl-L-methionine-dependent methyltransferase domain-containing protein [Arabidopsis thaliana] gi|20197178|gb|AAC14529.2| hypothetical protein [Arabidopsis thaliana] gi|330252713|gb|AEC07807.1| S-adenosyl-L-methionine-dependent methyltransferase domain-containing protein [Arabidopsis thaliana]

 Score =  659 bits (1699), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 325/550 (59%), Positives = 393/550 (71%), Gaps = 45/550 (8%)

Query: 18  KLQIYPTPNTGVSPFWRDKYEREAKKYWDLFYKRHQDRFFKDRHYLDKEWGRYFSGAGRK 77
           KLQIYPT N GVSPFWRDKYER+AKKYWD+FYK H DRFFKDRHYLDKEW  YFS +G+ 
Sbjct: 17  KLQIYPTANAGVSPFWRDKYERDAKKYWDIFYKHHGDRFFKDRHYLDKEWNSYFSVSGKS 76

Query: 78  DVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDD 137
            +LEVGCGAGNTIFPLIA YPD+FVYACDFSPRAV LV  H ++TETRV  F CDL  D 
Sbjct: 77  VILEVGCGAGNTIFPLIATYPDIFVYACDFSPRAVELVKAHDEYTETRVCAFACDLTGDG 136

Query: 138 LSRQISPSSIDIVTM-----------------------------------------ERLT 156
           L + ISPSS+DIVTM                                         ER +
Sbjct: 137 LDKHISPSSVDIVTMIFVLSAVSPEKMSSVLQNIRKVLKPNGCILFRDYAVGDLAQERFS 196

Query: 157 GKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGFDVEELGLCCKQVENRARELVMNRR 216
           GKDQ+ISENFYVRGDGTRAFYFSN+FL +LF E GF+VEEL +CCKQVENR+RELVMNRR
Sbjct: 197 GKDQRISENFYVRGDGTRAFYFSNEFLETLFSEQGFEVEELDVCCKQVENRSRELVMNRR 256

Query: 217 WVQAVFCSSGGATSSSEEAS-VRVDIFNQA-IIEPDVAANTLKEPMNDSEVDMSEGVAFE 274
           WVQA F  + G  +  +  +  ++D   Q   I+        KE ++ +++D+S+G+A E
Sbjct: 257 WVQATFRRTNGNKNPCDSLTPAKLDKSEQQDSIQSKSEEQERKEIIDYTDIDISDGLAME 316

Query: 275 MFGLSSFEDNEMIEVNLRDRSFKIEVLSKEYQHTCRSTGLMLWESAHLMAAVLARNPTIV 334
           MFG S    +EM  V LRD +FKI++LSKEYQHTC+STGLMLWESA LMA+VL RNP IV
Sbjct: 317 MFGASP-SSHEMSVVKLRDSAFKIKLLSKEYQHTCKSTGLMLWESARLMASVLDRNPNIV 375

Query: 335 AGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKR 394
           +GK+VLELGCGC GICSMVAA SA+LVVATD D+ AL LL +N+T NL+   L KL T  
Sbjct: 376 SGKRVLELGCGCTGICSMVAARSANLVVATDADTKALTLLTENITMNLQSSLLGKLKTSV 435

Query: 395 LEWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASS-NKSLREDQQP 453
           LEWGN++HIE+IK    EGFEVI+GTDV+Y+ EAI+PLF TAKEL        L   ++P
Sbjct: 436 LEWGNKEHIESIKRLACEGFEVIMGTDVTYVAEAIIPLFETAKELILRKMGDDLEVQEKP 495

Query: 454 AFILCHIFRQVDEPSMLSAATQCGFRLVDKWPSKNSASPSESIISSWFSENGHEVYLPSP 513
           A ILCH+FR+VDEPS+LSAA++ GF+L D+W + +  SP  +II SWFSE      +PS 
Sbjct: 496 ALILCHVFRRVDEPSLLSAASKFGFKLADRWAANSKESPIGNIIDSWFSEKDLVAEIPSS 555

Query: 514 ALNIMYFQVE 523
           AL+I+YFQ+E
Sbjct: 556 ALHILYFQME 565

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	523
TAIR|locus:2057756	565	AT2G26200 [Arabidopsis thalian	0.713	0.660	0.559	1.1e-163
POMBASE|SPBC3H7.11	248	SPBC3H7.11 "actin binding meth	0.233	0.491	0.476	1.5e-37
UNIPROTKB|Q8TCB7	284	METTL6 "Methyltransferase-like	0.260	0.478	0.440	3.2e-37
RGD|1359565	287	Mettl6 "methyltransferase like	0.237	0.432	0.484	7.5e-37
UNIPROTKB|Q6AXU8	287	Mettl6 "Methyltransferase-like	0.237	0.432	0.484	7.5e-37
MGI|MGI:1914261	282	Mettl6 "methyltransferase like	0.237	0.439	0.476	3e-36
RGD|1310240	385	Mettl2b "methyltransferase lik	0.141	0.192	0.434	2.3e-27
UNIPROTKB|Q0P5B2	378	METTL2 "Methyltransferase-like	0.175	0.243	0.372	3.4e-27
UNIPROTKB|Q5ZHP8	370	METTL2 "Methyltransferase-like	0.172	0.243	0.391	1.1e-26
UNIPROTKB|Q6P1Q9	378	METTL2B "Methyltransferase-lik	0.141	0.195	0.421	1.5e-26

TAIR|locus:2057756 AT2G26200 [Arabidopsis thaliana (taxid:3702)]

 Score = 1029 (367.3 bits), Expect = 1.1e-163, Sum P(2) = 1.1e-163
 Identities = 211/377 (55%), Positives = 263/377 (69%)

Query:   150 VTMERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGFDVEELGLCCKQVENRAR 209
             +  ER +GKDQ+ISENFYVRGDGTRAFYFSN+FL +LF E GF+VEEL +CCKQVENR+R
Sbjct:   190 LAQERFSGKDQRISENFYVRGDGTRAFYFSNEFLETLFSEQGFEVEELDVCCKQVENRSR 249

Query:   210 ELVMNRRWVQAVFCXXXXXXXXXXXXX-VRVDIFNQA-IIEPDVAANTLKEPMNDSEVDM 267
             ELVMNRRWVQA F                ++D   Q   I+        KE ++ +++D+
Sbjct:   250 ELVMNRRWVQATFRRTNGNKNPCDSLTPAKLDKSEQQDSIQSKSEEQERKEIIDYTDIDI 309

Query:   268 SEGVAFEMFGLSSFEDNEMIEVNLRDRSFKIEVLSKEYQHTCRSTGLMLWESAHLMAAVL 327
             S+G+A EMFG S    +EM  V LRD +FKI++LSKEYQHTC+STGLMLWESA LMA+VL
Sbjct:   310 SDGLAMEMFGASP-SSHEMSVVKLRDSAFKIKLLSKEYQHTCKSTGLMLWESARLMASVL 368

Query:   328 ARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFL 387
              RNP IV+GK+VLELGCGC GICSMVAA SA+LVVATD D+ AL LL +N+T NL+   L
Sbjct:   369 DRNPNIVSGKRVLELGCGCTGICSMVAARSANLVVATDADTKALTLLTENITMNLQSSLL 428

Query:   388 AKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASS-NKS 446
              KL T  LEWGN++HIE+IK    EGFEVI+GTDV+Y+ EAI+PLF TAKEL        
Sbjct:   429 GKLKTSVLEWGNKEHIESIKRLACEGFEVIMGTDVTYVAEAIIPLFETAKELILRKMGDD 488

Query:   447 LREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLVDKXXXXXXXXXXXXXXXXXXXXXGH 506
             L   ++PA ILCH+FR+VDEPS+LSAA++ GF+L D+                       
Sbjct:   489 LEVQEKPALILCHVFRRVDEPSLLSAASKFGFKLADRWAANSKESPIGNIIDSWFSEKDL 548

Query:   507 EVYLPSPALNIMYFQVE 523
                +PS AL+I+YFQ+E
Sbjct:   549 VAEIPSSALHILYFQME 565

GO:0005634 "nucleus" evidence=ISM

POMBASE|SPBC3H7.11 SPBC3H7.11 "actin binding methyltransferase (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 325 (119.5 bits), Expect = 1.5e-37, Sum P(2) = 1.5e-37
 Identities = 60/126 (47%), Positives = 84/126 (66%)

Query:    29 VSPFWRDKYEREAKKYWDLFYKRHQDRFFKDRHYLDKEWGRYFSGAGRK---DVLEVGCG 85
             +S FW +KY++E+KK WD FYKR++ RFFKDRH+LD+E+  YF G   K    +LEVGCG
Sbjct:     7 LSDFWVEKYKKESKKSWDKFYKRNETRFFKDRHWLDREFDCYF-GLPDKLPLTILEVGCG 65

Query:    86 AGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPS 145
              GN ++PL+   P++ +Y CDFSPRA++ V  H  + E RV  FV D+  D L   +  +
Sbjct:    66 VGNLVYPLLEVQPNLKIYCCDFSPRAIDFVKKHSCYNENRVFPFVNDITEDSLLEVLGSA 125

Query:   146 SIDIVT 151
              ID +T
Sbjct:   126 CIDTLT 131

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005884 "actin filament" evidence=ISO

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=ISO

GO:0030036 "actin cytoskeleton organization" evidence=ISO

GO:0051015 "actin filament binding" evidence=ISO

UNIPROTKB|Q8TCB7 METTL6 "Methyltransferase-like protein 6" [Homo sapiens (taxid:9606)]

 Score = 302 (111.4 bits), Expect = 3.2e-37, Sum P(2) = 3.2e-37
 Identities = 63/143 (44%), Positives = 84/143 (58%)

Query:    14 EEAPKLQIYPTPNTGVSPFWRDKYEREAKKYWDLFYKRHQDRFFKDRHYLDKEWGRYFSG 73
             EE  KL+      T VS F + K E+EA+K WDLFYKR+   FFKDRH+  +E+    S 
Sbjct:    17 EEEEKLK---RDQTLVSDFKQQKLEQEAQKNWDLFYKRNSTNFFKDRHWTTREFEELRSC 73

Query:    74 AGRKD----VLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTF 129
                +D    +LE GCG GN +FPL+   P++F YACDFSPRA+  V  +  +   R   F
Sbjct:    74 REFEDQKLTMLEAGCGVGNCLFPLLEEDPNIFAYACDFSPRAIEYVKQNPLYDTERCKVF 133

Query:   130 VCDLISDDLSRQISPSSIDIVTM 152
              CDL  DDL   + P S+D+V +
Sbjct:   134 QCDLTKDDLLDHVPPESVDVVML 156

GO:0008168 "methyltransferase activity" evidence=IEA

RGD|1359565 Mettl6 "methyltransferase like 6" [Rattus norvegicus (taxid:10116)]

 Score = 305 (112.4 bits), Expect = 7.5e-37, Sum P(2) = 7.5e-37
 Identities = 62/128 (48%), Positives = 79/128 (61%)

Query:    29 VSPFWRDKYEREAKKYWDLFYKRHQDRFFKDRHYLDKEWGRYFSGA---GRK-DVLEVGC 84
             VS F + K E+EA+K WDLFYKR+   FFKDRH+  +E+    S     G+K  +LE GC
Sbjct:    29 VSAFKQQKLEKEAQKNWDLFYKRNSTNFFKDRHWTTREFEELRSCREYEGQKLTLLEAGC 88

Query:    85 GAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISP 144
             G GN +FPL+    ++F YACDFSPRAV+ V  H  +   R   F CDL  DDL   I P
Sbjct:    89 GVGNCLFPLLEEDSNIFAYACDFSPRAVDYVKQHPLYNAERCKVFQCDLTRDDLLDHIPP 148

Query:   145 SSIDIVTM 152
              S+D VT+
Sbjct:   149 ESVDAVTL 156

GO:0008168 "methyltransferase activity" evidence=IEA

UNIPROTKB|Q6AXU8 Mettl6 "Methyltransferase-like protein 6" [Rattus norvegicus (taxid:10116)]

 Score = 305 (112.4 bits), Expect = 7.5e-37, Sum P(2) = 7.5e-37
 Identities = 62/128 (48%), Positives = 79/128 (61%)

Query:    29 VSPFWRDKYEREAKKYWDLFYKRHQDRFFKDRHYLDKEWGRYFSGA---GRK-DVLEVGC 84
             VS F + K E+EA+K WDLFYKR+   FFKDRH+  +E+    S     G+K  +LE GC
Sbjct:    29 VSAFKQQKLEKEAQKNWDLFYKRNSTNFFKDRHWTTREFEELRSCREYEGQKLTLLEAGC 88

Query:    85 GAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISP 144
             G GN +FPL+    ++F YACDFSPRAV+ V  H  +   R   F CDL  DDL   I P
Sbjct:    89 GVGNCLFPLLEEDSNIFAYACDFSPRAVDYVKQHPLYNAERCKVFQCDLTRDDLLDHIPP 148

Query:   145 SSIDIVTM 152
              S+D VT+
Sbjct:   149 ESVDAVTL 156

GO:0008168 "methyltransferase activity" evidence=IEA

MGI|MGI:1914261 Mettl6 "methyltransferase like 6" [Mus musculus (taxid:10090)]

 Score = 300 (110.7 bits), Expect = 3.0e-36, Sum P(2) = 3.0e-36
 Identities = 61/128 (47%), Positives = 79/128 (61%)

Query:    29 VSPFWRDKYEREAKKYWDLFYKRHQDRFFKDRHYLDKEWGRYFSGA---GRK-DVLEVGC 84
             VS F + K E+EA+K WDLFYKR+   FFKDRH+  +E+    S     G+K  +LE GC
Sbjct:    29 VSAFKQQKLEKEAQKNWDLFYKRNSTNFFKDRHWTTREFEELRSCREYEGQKLTLLEAGC 88

Query:    85 GAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISP 144
             G GN +FPL+    ++F YACDFSPRAV+ V  H  +   R   F CDL  DDL   + P
Sbjct:    89 GVGNCLFPLLEEDLNLFAYACDFSPRAVDYVKQHPLYNAERCKVFQCDLTRDDLLDHVPP 148

Query:   145 SSIDIVTM 152
              S+D VT+
Sbjct:   149 ESVDAVTL 156

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0032259 "methylation" evidence=IEA

RGD|1310240 Mettl2b "methyltransferase like 2B" [Rattus norvegicus (taxid:10116)]

 Score = 182 (69.1 bits), Expect = 2.3e-27, Sum P(3) = 2.3e-27
 Identities = 33/76 (43%), Positives = 49/76 (64%)

Query:    79 VLEVGCGAGNTIFPLIAAY--PDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISD 136
             +LEVGCG GNT+FP++     PD+FVY CDFS  A+ LV T+ ++  +R   FV DL  +
Sbjct:   182 ILEVGCGVGNTVFPILQTNNNPDLFVYCCDFSATAIELVKTNSEYDPSRCFAFVHDLCDE 241

Query:   137 DLSRQISPSSIDIVTM 152
             D S  +   S+D++ +
Sbjct:   242 DQSYPMPKDSLDVIVL 257

GO:0008168 "methyltransferase activity" evidence=IEA

UNIPROTKB|Q0P5B2 METTL2 "Methyltransferase-like protein 2" [Bos taurus (taxid:9913)]

 Score = 175 (66.7 bits), Expect = 3.4e-27, Sum P(3) = 3.4e-27
 Identities = 35/94 (37%), Positives = 54/94 (57%)

Query:    61 HYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAY--PDVFVYACDFSPRAVNLVMTH 118
             H+L+     +   +    +LEVGCG GNT+FP++     P +FVY CDFS  AV LV T+
Sbjct:   166 HHLEICANEFPGSSATYRILEVGCGVGNTVFPILQTNNDPSLFVYCCDFSSTAVELVQTN 225

Query:   119 KDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM 152
               +  +R   FV DL  +D S  +  +S+D++ +
Sbjct:   226 SAYDPSRCFAFVHDLCDEDKSYPMPENSLDVIIL 259

GO:0008168 "methyltransferase activity" evidence=IEA

UNIPROTKB|Q5ZHP8 METTL2 "Methyltransferase-like protein 2" [Gallus gallus (taxid:9031)]

 Score = 172 (65.6 bits), Expect = 1.1e-26, Sum P(3) = 1.1e-26
 Identities = 36/92 (39%), Positives = 54/92 (58%)

Query:    63 LDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAY--PDVFVYACDFSPRAVNLVMTHKD 120
             L + +  Y   +    +LEVGCGAGNT+FP++     P +FVY CDFS  AV+LV ++ +
Sbjct:   161 LKQSYEDYPGSSASYRILEVGCGAGNTVFPILQTNNDPGLFVYCCDFSTTAVDLVQSNVE 220

Query:   121 FTETRVSTFVCDLISDDLSRQISPSSIDIVTM 152
             +  +R   FV DL +D     +   S+DIV +
Sbjct:   221 YDSSRCFAFVHDLCNDQSPFPMPDESLDIVIL 252

GO:0008168 "methyltransferase activity" evidence=IEA

UNIPROTKB|Q6P1Q9 METTL2B "Methyltransferase-like protein 2B" [Homo sapiens (taxid:9606)]

 Score = 174 (66.3 bits), Expect = 1.5e-26, Sum P(3) = 1.5e-26
 Identities = 32/76 (42%), Positives = 48/76 (63%)

Query:    79 VLEVGCGAGNTIFPLIAAY--PDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISD 136
             +LEVGCG GNT+FP++     P +FVY CDFS  A+ LV T+ ++  +R   FV DL  +
Sbjct:   184 ILEVGCGVGNTVFPILQTNNDPGLFVYCCDFSSTAIELVQTNSEYDPSRCFAFVHDLCDE 243

Query:   137 DLSRQISPSSIDIVTM 152
             + S  +   S+DI+ +
Sbjct:   244 EKSYPVPKGSLDIIIL 259

GO:0008168 "methyltransferase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pm.C_LG_VI000669 hypothetical protein (557 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	523
pfam10294	170	pfam10294, Methyltransf_16, Putative methyltransfe	1e-09
pfam08242	98	pfam08242, Methyltransf_12, Methyltransferase doma	8e-08
cd02440	107	cd02440, AdoMet_MTases, S-adenosylmethionine-depen	9e-07
COG3897	218	COG3897, COG3897, Predicted methyltransferase [Gen	1e-05
cd02440	107	cd02440, AdoMet_MTases, S-adenosylmethionine-depen	2e-04
pfam12847	104	pfam12847, Methyltransf_18, Methyltransferase doma	5e-04
pfam13489	154	pfam13489, Methyltransf_23, Methyltransferase doma	6e-04
pfam13659	117	pfam13659, Methyltransf_26, Methyltransferase doma	7e-04
PRK14968	188	PRK14968, PRK14968, putative methyltransferase; Pr	8e-04
pfam13659	117	pfam13659, Methyltransf_26, Methyltransferase doma	0.001
pfam05175	170	pfam05175, MTS, Methyltransferase small domain	0.001
COG0500	257	COG0500, SmtA, SAM-dependent methyltransferases [S	0.001
pfam13649	97	pfam13649, Methyltransf_25, Methyltransferase doma	0.001
COG2890	280	COG2890, HemK, Methylase of polypeptide chain rele	0.002

>gnl|CDD|220679 pfam10294, Methyltransf_16, Putative methyltransferase

 Score = 57.0 bits (138), Expect = 1e-09
 Identities = 36/145 (24%), Positives = 62/145 (42%), Gaps = 18/145 (12%)

Query: 311 STGLMLWESAHLMAAVLARNPTIVA----GKKVLELGCGCG--GICSMVAAGSADLVVAT 364
             G  +W++A +++  L    T       G  VLELG G G  GI   +    A + + T
Sbjct: 16  GIGGHVWDAAVVLSKYLEMKITPGGNNLSGLNVLELGSGTGLVGIAVALLLPGASVTI-T 74

Query: 365 DGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEE--NNEGFEVILGTDV 422
           D +  A++L+ +N+  N       K+  K L+WG     E + ++  +    ++IL  D 
Sbjct: 75  DLEE-AIELMKKNIELNGLSS---KVTAKVLDWG-----EDLPDDVFDPHPVDLILAADC 125

Query: 423 SYIPEAILPLFATAKELTASSNKSL 447
            Y  ++   L  T  +L       L
Sbjct: 126 VYNEDSFPLLEKTLNDLLGKETVIL 150

Length = 170

>gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain

 Score = 50.1 bits (120), Expect = 8e-08
 Identities = 22/77 (28%), Positives = 30/77 (38%), Gaps = 10/77 (12%)

Query: 80  LEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNL----VMTHKDFTETRVSTFVCDLIS 135
           L++GCG G  +  L+ A P +     D SP A+      +         RV   V D I 
Sbjct: 1   LDIGCGTGTLLRALLEALPGLEYTGVDISPAALEAAAERLAALGLLDAVRVRLDVLDAID 60

Query: 136 DDLSRQISPSSIDIVTM 152
            D      P S D+V  
Sbjct: 61  LD------PGSFDVVVA 71

Members of this family are SAM dependent methyltransferases. Length = 98

>gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

 Score = 47.0 bits (112), Expect = 9e-07
 Identities = 27/103 (26%), Positives = 44/103 (42%), Gaps = 11/103 (10%)

Query: 338 KVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEW 397
           +VL+LGCG G +   +A+G    V   D   +AL+L  +   A L            +E 
Sbjct: 1   RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLAD---------NVEV 51

Query: 398 GNRDHIEAIKEENNEGFEVILGTDV-SYIPEAILPLFATAKEL 439
              D  E +  E +E F+VI+      ++ E +      A+ L
Sbjct: 52  LKGD-AEELPPEADESFDVIISDPPLHHLVEDLARFLEEARRL 93

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107

>gnl|CDD|226413 COG3897, COG3897, Predicted methyltransferase [General function prediction only]

 Score = 46.3 bits (110), Expect = 1e-05
 Identities = 31/127 (24%), Positives = 49/127 (38%), Gaps = 20/127 (15%)

Query: 316 LWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAA-GSADLVVATDGDSIALDLL 374
            W    ++A  +  +P  V GK+VL+LG G  G+ ++ AA   A  VVA D D      +
Sbjct: 60  AWAGGQVLARYIDDHPETVRGKRVLDLGAG-SGLVAIAAARAGAAEVVAADIDPWLEQAI 118

Query: 375 AQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPE---AILP 431
             N  AN                    H + I   +   F+++L  D+ Y       ++P
Sbjct: 119 RLNAAANGVSILFT-------------HADLI--GSPPAFDLLLAGDLFYNHTEADRLIP 163

Query: 432 LFATAKE 438
                 E
Sbjct: 164 WKDRLAE 170

Length = 218

>gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

 Score = 40.5 bits (95), Expect = 2e-04
 Identities = 19/74 (25%), Positives = 25/74 (33%), Gaps = 5/74 (6%)

Query: 78  DVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKD-FTETRVSTFVCDLISD 136
            VL++GCG G     L A+ P   V   D SP A+ L            V     D    
Sbjct: 1   RVLDLGCGTGALALAL-ASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEEL 59

Query: 137 DLSRQISPSSIDIV 150
                    S D++
Sbjct: 60  PPEA---DESFDVI 70

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107

>gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain

 Score = 39.2 bits (92), Expect = 5e-04
 Identities = 24/106 (22%), Positives = 39/106 (36%), Gaps = 15/106 (14%)

Query: 335 AGKKVLELGCGCGGICSMVAAGSADL-VVATDGDSIALDLLAQNVTANLKPPFLAKLITK 393
            G +VL++GCG G +   +A       V   D     L+L  +N    L P         
Sbjct: 1   PGARVLDIGCGTGSLAIELARLFPGARVTGVDLSPEMLELARENAKLALGP--------- 51

Query: 394 RLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKEL 439
           R+ +   D  +A   +  EGF+ +    +      +L L      L
Sbjct: 52  RITFVQGDAPDA--LDLLEGFDAVF---IGGGGGDLLELLDALASL 92

Protein in this family function as methyltransferases. Length = 104

>gnl|CDD|222171 pfam13489, Methyltransf_23, Methyltransferase domain

 Score = 40.2 bits (94), Expect = 6e-04
 Identities = 31/156 (19%), Positives = 55/156 (35%), Gaps = 23/156 (14%)

Query: 60  RHYLDKEWGRYFS-----GAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNL 114
           R   ++   R  +           VL++GCG G  +  L     DV     D SP AV +
Sbjct: 2   RRQRERFLARLLARLLPRLKPGGRVLDIGCGTGILLRLLRERGFDVTGV--DPSPAAVLI 59

Query: 115 VMTHKDFTETRVSTFVCDLIS---------------DDLSRQISPSSIDIVTMERLTGKD 159
                D  +  V     DLI+                 L   + P  + +++        
Sbjct: 60  FSLF-DAPDPAVLAGKYDLITAFEVLEHLPDPPALLQQLRELLKPGGVLLISTPLADDDA 118

Query: 160 QKISENFYVRGDGTRAFYFSNDFLTSLFKENGFDVE 195
           +  +   Y+R   T   ++S + L  L ++ GF++ 
Sbjct: 119 RLFANWHYLRPRNTHISFYSEESLKRLLEKAGFELV 154

This family appears to be a methyltransferase domain. Length = 154

>gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain

 Score = 39.3 bits (92), Expect = 7e-04
 Identities = 27/127 (21%), Positives = 43/127 (33%), Gaps = 13/127 (10%)

Query: 336 GKKVLELGCGCGGICSMVA-AGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKR 394
           G +VL+ G G G      A AG    VV  + D  A  L  +              +  R
Sbjct: 1   GDRVLDPGAGSGAFLLAAARAGPDARVVGVELDPEAAALARRR--------LALAGLAPR 52

Query: 395 LEWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILP--LFATAKELTASSNKSLREDQQ 452
           +     D    + E  +  F+++LG +  Y P A  P           A++ + L+    
Sbjct: 53  VRVVVGD-ARELLELPDGSFDLVLG-NPPYGPRAGDPKDNRDLYDRFLAAALRLLKPGGV 110

Query: 453 PAFILCH 459
              I   
Sbjct: 111 LVVITPA 117

This family contains methyltransferase domains. Length = 117

>gnl|CDD|237872 PRK14968, PRK14968, putative methyltransferase; Provisional

 Score = 40.3 bits (95), Expect = 8e-04
 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 327 LARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTAN 381
           LA N     G +VLE+G G  GI ++VAA +   VV  D +  A++    N   N
Sbjct: 15  LAENAVDKKGDRVLEVGTGS-GIVAIVAAKNGKKVVGVDINPYAVECAKCNAKLN 68

Length = 188

>gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain

 Score = 38.2 bits (89), Expect = 0.001
 Identities = 19/76 (25%), Positives = 26/76 (34%), Gaps = 5/76 (6%)

Query: 79  VLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVM--THKDFTETRVSTFVCDLISD 136
           VL+ G G+G  +     A PD  V   +  P A  L            RV   V D    
Sbjct: 4   VLDPGAGSGAFLLAAARAGPDARVVGVELDPEAAALARRRLALAGLAPRVRVVVGDAREL 63

Query: 137 DLSRQISPSSIDIVTM 152
               ++   S D+V  
Sbjct: 64  L---ELPDGSFDLVLG 76

This family contains methyltransferase domains. Length = 117

>gnl|CDD|203189 pfam05175, MTS, Methyltransferase small domain

 Score = 39.5 bits (93), Expect = 0.001
 Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 3/60 (5%)

Query: 324 AAVLARN-PTIVAGKKVLELGCGCGGICSMVAAGSADL-VVATDGDSIALDLLAQNVTAN 381
           + +L  + P  + GK VL+LGCG G + + +A  S DL V   D ++ AL+    N+ AN
Sbjct: 20  SRLLLSHLPKPLGGK-VLDLGCGYGVLGAALAKRSPDLEVTMVDINARALESARANLAAN 78

This domain is found in ribosomal RNA small subunit methyltransferase C as well as other methyltransferases . Length = 170

>gnl|CDD|223574 COG0500, SmtA, SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

 Score = 40.7 bits (92), Expect = 0.001
 Identities = 22/122 (18%), Positives = 34/122 (27%), Gaps = 1/122 (0%)

Query: 30  SPFWRDKYEREAKKYWDLFYKRHQDRFFKDRHYLDKEWGRYFSGA-GRKDVLEVGCGAGN 88
           S    +   R  + Y  L           +         R      G   VL++GCG G 
Sbjct: 2   SLLSAELLSRILELYDRLAELLDAFLLLAEELLDLLLVLRLLRLLPGGLGVLDIGCGTGR 61

Query: 89  TIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSID 148
                       +V   D SP  + L     +     +  FV       +      +S D
Sbjct: 62  LALLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFD 121

Query: 149 IV 150
           +V
Sbjct: 122 LV 123

Length = 257

>gnl|CDD|222287 pfam13649, Methyltransf_25, Methyltransferase domain

 Score = 37.7 bits (88), Expect = 0.001
 Identities = 23/87 (26%), Positives = 34/87 (39%), Gaps = 10/87 (11%)

Query: 79  VLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDL 138
           +L++GCG G  +  L  A P   V   D S  A+ L          +V   V D    DL
Sbjct: 1   ILDLGCGTGRVLRALARAGPS-SVTGVDISKEALELAKERLRDKGPKVRFVVADA--RDL 57

Query: 139 SRQISPSSIDIV-----TMERLTGKDQ 160
                  S D+V     +++ L+ K  
Sbjct: 58  PF--EEGSFDLVICAGLSLDYLSPKQL 82

This family appears to be a methyltransferase domain. Length = 97

>gnl|CDD|225443 COG2890, HemK, Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

 Score = 40.4 bits (95), Expect = 0.002
 Identities = 31/120 (25%), Positives = 47/120 (39%), Gaps = 23/120 (19%)

Query: 317 WESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADL-VVATDGDSIALDLLA 375
            ++  L+ A LA        K++L+LG G G I   +A    D  V+A D    AL L  
Sbjct: 94  PDTELLVEAALALLL--QLDKRILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALAR 151

Query: 376 QNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVS---YIPEAILPL 432
           +N   N     L +++  + +           E     F++I    VS   YIP     L
Sbjct: 152 ENAERNG----LVRVLVVQSDLF---------EPLRGKFDLI----VSNPPYIPAEDPEL 194

Length = 280

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	523
KOG2361	264	consensus Predicted methyltransferase [General fun	100.0
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	99.94
PLN02336	475	phosphoethanolamine N-methyltransferase	99.93
KOG3201	201	consensus Uncharacterized conserved protein [Funct	99.72
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	99.7
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	99.68
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	99.68
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	99.67
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	99.64
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.63
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	99.63
COG4123	248	Predicted O-methyltransferase [General function pr	99.63
COG3897	218	Predicted methyltransferase [General function pred	99.61
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.58
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	99.57
PLN02233	261	ubiquinone biosynthesis methyltransferase	99.57
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	99.55
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	99.54
KOG2793	248	consensus Putative N2,N2-dimethylguanosine tRNA me	99.54
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	99.52
PLN02244	340	tocopherol O-methyltransferase	99.51
KOG1271	227	consensus Methyltransferases [General function pre	99.51
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	99.51
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	99.51
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	99.5
TIGR00452	314	methyltransferase, putative. Known examples to dat	99.5
PLN02244	340	tocopherol O-methyltransferase	99.49
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	99.49
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	99.46
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	99.46
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	99.46
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	99.45
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	99.45
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	99.44
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.44
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	99.44
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	99.44
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	99.43
PLN02233	261	ubiquinone biosynthesis methyltransferase	99.41
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	99.41
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	99.4
PRK14967	223	putative methyltransferase; Provisional	99.4
PRK11207	197	tellurite resistance protein TehB; Provisional	99.4
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	99.39
COG4123	248	Predicted O-methyltransferase [General function pr	99.39
COG2890	280	HemK Methylase of polypeptide chain release factor	99.39
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	99.39
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	99.38
PLN02490	340	MPBQ/MSBQ methyltransferase	99.38
PRK14968	188	putative methyltransferase; Provisional	99.38
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	99.38
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	99.38
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	99.37
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	99.37
PLN02585	315	magnesium protoporphyrin IX methyltransferase	99.36
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	99.36
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	99.36
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.35
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	99.35
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	99.35
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	99.35
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	99.35
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	99.34
PRK11207	197	tellurite resistance protein TehB; Provisional	99.34
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	99.34
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	99.33
PRK12335	287	tellurite resistance protein TehB; Provisional	99.33
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	99.32
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	99.32
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	99.32
PLN02336	475	phosphoethanolamine N-methyltransferase	99.32
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.32
PRK13255	218	thiopurine S-methyltransferase; Reviewed	99.32
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	99.32
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	99.32
TIGR00452	314	methyltransferase, putative. Known examples to dat	99.32
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	99.31
PLN02490	340	MPBQ/MSBQ methyltransferase	99.31
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	99.31
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	99.31
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	99.31
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	99.31
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	99.3
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	99.3
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	99.29
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	99.28
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	99.28
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	99.28
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	99.28
PRK10258	251	biotin biosynthesis protein BioC; Provisional	99.27
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	99.27
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	99.27
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	99.26
PRK10258	251	biotin biosynthesis protein BioC; Provisional	99.26
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	99.26
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	99.26
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	99.26
KOG1271	227	consensus Methyltransferases [General function pre	99.26
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.26
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	99.26
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	99.26
PLN02585	315	magnesium protoporphyrin IX methyltransferase	99.25
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	99.25
PRK06202	232	hypothetical protein; Provisional	99.24
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	99.24
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	99.24
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	99.24
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	99.24
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	99.24
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	99.23
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	99.22
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	99.22
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	99.22
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	99.22
PRK05785	226	hypothetical protein; Provisional	99.22
PRK08317	241	hypothetical protein; Provisional	99.21
PRK08317	241	hypothetical protein; Provisional	99.21
PRK04266	226	fibrillarin; Provisional	99.2
PRK04266	226	fibrillarin; Provisional	99.2
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	99.2
PRK06922	677	hypothetical protein; Provisional	99.19
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	99.19
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	99.19
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	99.19
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	99.19
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	99.18
TIGR00740	239	methyltransferase, putative. A simple BLAST search	99.18
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	99.18
PRK13256	226	thiopurine S-methyltransferase; Reviewed	99.18
PHA03411	279	putative methyltransferase; Provisional	99.18
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	99.18
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	99.18
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	99.18
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	99.18
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	99.18
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	99.18
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	99.17
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	99.17
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	99.17
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	99.17
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	99.17
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	99.17
TIGR00740	239	methyltransferase, putative. A simple BLAST search	99.17
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	99.16
PRK12335	287	tellurite resistance protein TehB; Provisional	99.16
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	99.16
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	99.15
KOG1500	517	consensus Protein arginine N-methyltransferase CAR	99.15
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	99.15
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	99.14
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	99.14
KOG3191	209	consensus Predicted N6-DNA-methyltransferase [Tran	99.13
PRK06202	232	hypothetical protein; Provisional	99.13
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	99.13
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	99.13
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	99.13
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	99.12
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	99.12
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	99.12
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	99.12
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	99.12
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	99.12
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	99.1
PLN02672	1082	methionine S-methyltransferase	99.1
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	99.1
COG2890	280	HemK Methylase of polypeptide chain release factor	99.1
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	99.09
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	99.09
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	99.09
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	99.09
KOG4300	252	consensus Predicted methyltransferase [General fun	99.08
COG4976	287	Predicted methyltransferase (contains TPR repeat)	99.08
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	99.08
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	99.08
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	99.08
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	99.07
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	99.07
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	99.07
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	99.07
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	99.06
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	99.06
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	99.06
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	99.05
PHA03411	279	putative methyltransferase; Provisional	99.04
PTZ00146	293	fibrillarin; Provisional	99.03
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	99.03
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	99.02
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	99.02
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	99.02
PRK14967	223	putative methyltransferase; Provisional	99.02
KOG2904	328	consensus Predicted methyltransferase [General fun	99.01
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	99.0
PRK07402	196	precorrin-6B methylase; Provisional	99.0
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	99.0
PRK14968	188	putative methyltransferase; Provisional	98.99
PRK05785	226	hypothetical protein; Provisional	98.99
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	98.99
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	98.99
PLN03075	296	nicotianamine synthase; Provisional	98.99
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	98.98
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	98.98
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	98.98
PTZ00146	293	fibrillarin; Provisional	98.97
TIGR03438	301	probable methyltransferase. This model represents	98.97
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	98.97
PLN03075	296	nicotianamine synthase; Provisional	98.97
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	98.97
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	98.97
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	98.96
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	98.96
KOG3010	261	consensus Methyltransferase [General function pred	98.96
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	98.95
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	98.95
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	98.94
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	98.94
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	98.92
KOG4300	252	consensus Predicted methyltransferase [General fun	98.92
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	98.92
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	98.91
PRK04457	262	spermidine synthase; Provisional	98.91
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	98.91
PRK06922	677	hypothetical protein; Provisional	98.9
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	98.9
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	98.9
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	98.89
PRK07402	196	precorrin-6B methylase; Provisional	98.89
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	98.89
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	98.89
COG4976	287	Predicted methyltransferase (contains TPR repeat)	98.88
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	98.88
TIGR00438	188	rrmJ cell division protein FtsJ.	98.88
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	98.87
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	98.86
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	98.85
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	98.84
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	98.84
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	98.84
PRK14902	444	16S rRNA methyltransferase B; Provisional	98.83
PRK10901	427	16S rRNA methyltransferase B; Provisional	98.83
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	98.83
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	98.83
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	98.82
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	98.82
PRK10901	427	16S rRNA methyltransferase B; Provisional	98.8
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	98.79
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	98.79
PRK14903	431	16S rRNA methyltransferase B; Provisional	98.78
PLN02672	1082	methionine S-methyltransferase	98.78
COG0742	187	N6-adenine-specific methylase [DNA replication, re	98.78
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	98.77
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	98.77
PRK14901	434	16S rRNA methyltransferase B; Provisional	98.77
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	98.77
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	98.75
PRK14904	445	16S rRNA methyltransferase B; Provisional	98.75
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	98.73
PHA03412	241	putative methyltransferase; Provisional	98.73
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	98.73
TIGR00438	188	rrmJ cell division protein FtsJ.	98.73
KOG3191	209	consensus Predicted N6-DNA-methyltransferase [Tran	98.72
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	98.71
PRK00811	283	spermidine synthase; Provisional	98.7
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	98.7
PRK04457	262	spermidine synthase; Provisional	98.69
PRK01581	374	speE spermidine synthase; Validated	98.69
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	98.69
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	98.68
PHA03412	241	putative methyltransferase; Provisional	98.68
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.66
TIGR03438	301	probable methyltransferase. This model represents	98.66
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.66
COG4122	219	Predicted O-methyltransferase [General function pr	98.66
PRK13255	218	thiopurine S-methyltransferase; Reviewed	98.66
COG1041	347	Predicted DNA modification methylase [DNA replicat	98.64
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	98.64
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	98.64
KOG3010	261	consensus Methyltransferase [General function pred	98.64
PRK01581	374	speE spermidine synthase; Validated	98.63
PRK14904	445	16S rRNA methyltransferase B; Provisional	98.63
PRK14901	434	16S rRNA methyltransferase B; Provisional	98.62
KOG3420	185	consensus Predicted RNA methylase [Translation, ri	98.62
PRK03612	521	spermidine synthase; Provisional	98.62
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	98.62
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	98.62
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	98.61
KOG2904	328	consensus Predicted methyltransferase [General fun	98.61
PLN02476	278	O-methyltransferase	98.6
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	98.6
PRK04148	134	hypothetical protein; Provisional	98.59
PRK14902	444	16S rRNA methyltransferase B; Provisional	98.58
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	98.58
PRK00811	283	spermidine synthase; Provisional	98.58
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	98.57
PRK04148	134	hypothetical protein; Provisional	98.57
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	98.57
KOG3420	185	consensus Predicted RNA methylase [Translation, ri	98.57
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	98.56
PRK14903	431	16S rRNA methyltransferase B; Provisional	98.55
KOG2899	288	consensus Predicted methyltransferase [General fun	98.55
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	98.54
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	98.53
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	98.52
KOG2920	282	consensus Predicted methyltransferase [General fun	98.51
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	98.51
PLN02366	308	spermidine synthase	98.49
PRK03612	521	spermidine synthase; Provisional	98.49
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	98.49
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	98.49
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	98.48
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.47
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	98.47
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	98.47
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.46
PLN02366	308	spermidine synthase	98.46
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	98.45
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	98.43
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	98.43
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	98.42
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	98.41
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	98.41
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	98.41
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	98.41
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	98.41
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	98.39
COG2520	341	Predicted methyltransferase [General function pred	98.39
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.39
KOG2361	264	consensus Predicted methyltransferase [General fun	98.38
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	98.37
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	98.36
COG2265	432	TrmA SAM-dependent methyltransferases related to t	98.35
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	98.35
PLN02232	160	ubiquinone biosynthesis methyltransferase	98.33
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	98.33
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	98.31
PLN02589	247	caffeoyl-CoA O-methyltransferase	98.29
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	98.28
KOG2497	262	consensus Predicted methyltransferase [General fun	98.26
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	98.26
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	98.25
COG2521	287	Predicted archaeal methyltransferase [General func	98.25
KOG2352	482	consensus Predicted spermine/spermidine synthase [	98.23
PRK13256	226	thiopurine S-methyltransferase; Reviewed	98.22
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	98.21
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	98.18
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	98.17
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	98.17
KOG1975	389	consensus mRNA cap methyltransferase [RNA processi	98.17
KOG0820	315	consensus Ribosomal RNA adenine dimethylase [RNA p	98.16
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	98.11
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	98.11
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	98.09
COG2521	287	Predicted archaeal methyltransferase [General func	98.09
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	98.09
PLN02823	336	spermine synthase	98.08
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	98.08
KOG2899	288	consensus Predicted methyltransferase [General fun	98.08
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	98.07
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	98.06
PLN02476	278	O-methyltransferase	98.05
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	98.04
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	98.03
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	98.03
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	98.03
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	98.02
PRK00536	262	speE spermidine synthase; Provisional	98.02
PF01861	243	DUF43: Protein of unknown function DUF43; InterPro	98.02
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	98.02
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	98.01
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	98.01
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	98.01
COG1041	347	Predicted DNA modification methylase [DNA replicat	98.01
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	98.0
COG4122	219	Predicted O-methyltransferase [General function pr	98.0
KOG1500	517	consensus Protein arginine N-methyltransferase CAR	97.92
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	97.91
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	97.91
KOG3045	325	consensus Predicted RNA methylase involved in rRNA	97.88
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	97.88
KOG2940	325	consensus Predicted methyltransferase [General fun	97.86
KOG1975	389	consensus mRNA cap methyltransferase [RNA processi	97.86
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	97.85
KOG3045	325	consensus Predicted RNA methylase involved in rRNA	97.84
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	97.83
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	97.81
KOG1661	237	consensus Protein-L-isoaspartate(D-aspartate) O-me	97.81
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	97.81
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	97.8
PLN02589	247	caffeoyl-CoA O-methyltransferase	97.8
KOG2940	325	consensus Predicted methyltransferase [General fun	97.79
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	97.79
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	97.77
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	97.75
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	97.75
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	97.75
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	97.75
PLN02823	336	spermine synthase	97.74
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	97.74
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	97.73
COG2265	432	TrmA SAM-dependent methyltransferases related to t	97.73
KOG2187	534	consensus tRNA uracil-5-methyltransferase and rela	97.7
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	97.69
PLN02232	160	ubiquinone biosynthesis methyltransferase	97.69
COG4076	252	Predicted RNA methylase [General function predicti	97.68
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	97.67
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	97.67
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	97.67
KOG2187	534	consensus tRNA uracil-5-methyltransferase and rela	97.65
KOG2915	314	consensus tRNA(1-methyladenosine) methyltransferas	97.65
PF01234	256	NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I	97.64
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	97.63
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	97.61
KOG3987	288	consensus Uncharacterized conserved protein DREV/C	97.59
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	97.59
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	97.58
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	97.55
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	97.53
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	97.53
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	97.53
KOG1661	237	consensus Protein-L-isoaspartate(D-aspartate) O-me	97.52
PHA01634	156	hypothetical protein	97.52
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	97.49
KOG0820	315	consensus Ribosomal RNA adenine dimethylase [RNA p	97.48
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	97.46
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	97.45
PF01234	256	NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I	97.45
KOG1331	293	consensus Predicted methyltransferase [General fun	97.43
KOG1663	237	consensus O-methyltransferase [Secondary metabolit	97.43
KOG2915	314	consensus tRNA(1-methyladenosine) methyltransferas	97.42
KOG1709	271	consensus Guanidinoacetate methyltransferase and r	97.4
PF13679	141	Methyltransf_32: Methyltransferase domain	97.4
KOG2730	263	consensus Methylase [General function prediction o	97.39
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	97.39
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	97.39
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	97.36
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	97.35
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	97.35
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	97.35
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	97.35
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	97.34
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	97.34
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	97.32
PRK00536	262	speE spermidine synthase; Provisional	97.3
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	97.29
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	97.27
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	97.24
KOG3115	249	consensus Methyltransferase-like protein [General	97.23
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	97.23
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	97.21
PRK10742	250	putative methyltransferase; Provisional	97.19
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	97.19
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	97.17
COG2384	226	Predicted SAM-dependent methyltransferase [General	97.14
PF11968	219	DUF3321: Putative methyltransferase (DUF3321); Int	97.11
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	97.1
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	97.07
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	97.04
PF13679	141	Methyltransf_32: Methyltransferase domain	97.04
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	97.03
KOG1501	636	consensus Arginine N-methyltransferase [General fu	96.97
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	96.94
COG2520	341	Predicted methyltransferase [General function pred	96.91
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	96.9
PF01795	310	Methyltransf_5: MraW methylase family; InterPro: I	96.89
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	96.88
COG4076	252	Predicted RNA methylase [General function predicti	96.88
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	96.85
cd00315	275	Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth	96.82
COG0742	187	N6-adenine-specific methylase [DNA replication, re	96.8
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	96.79
COG3897	218	Predicted methyltransferase [General function pred	96.78
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	96.77
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	96.76
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	96.76
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	96.75
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	96.75
COG2384	226	Predicted SAM-dependent methyltransferase [General	96.71
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	96.71
PF11968	219	DUF3321: Putative methyltransferase (DUF3321); Int	96.68
COG0275	314	Predicted S-adenosylmethionine-dependent methyltra	96.68
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	96.65
KOG3987	288	consensus Uncharacterized conserved protein DREV/C	96.65
KOG2730	263	consensus Methylase [General function prediction o	96.49
COG4262	508	Predicted spermidine synthase with an N-terminal m	96.49
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	96.48
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	96.42
COG5459	484	Predicted rRNA methylase [Translation, ribosomal s	96.39
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	96.3
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	96.28
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	96.25
KOG1709	271	consensus Guanidinoacetate methyltransferase and r	96.2
KOG1663	237	consensus O-methyltransferase [Secondary metabolit	96.15
KOG1269	364	consensus SAM-dependent methyltransferases [Lipid	96.09
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	96.08
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	95.88
COG4262	508	Predicted spermidine synthase with an N-terminal m	95.74
PRK10742	250	putative methyltransferase; Provisional	95.71
COG3129	292	Predicted SAM-dependent methyltransferase [General	95.46
PF01861	243	DUF43: Protein of unknown function DUF43; InterPro	95.43
KOG3178	342	consensus Hydroxyindole-O-methyltransferase and re	95.37
KOG3178	342	consensus Hydroxyindole-O-methyltransferase and re	95.33

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=100.00  E-value=6e-35  Score=262.67  Aligned_cols=216  Identities=45%  Similarity=0.782  Sum_probs=199.0

Q ss_pred             CCcccccchhhhccCCCCCCCChHHHHHHHHHhhHHHHHHHHhcccccccchhhhHHHHhhhhcCCCCC--eEEEECCCc
Q 009871            9 AGIGKEEAPKLQIYPTPNTGVSPFWRDKYEREAKKYWDLFYKRHQDRFFKDRHYLDKEWGRYFSGAGRK--DVLEVGCGA   86 (523)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wd~~y~~~~~~f~~~~~~l~~~~~~~~~~~~~~--~iLDiGcG~   86 (523)
                      +..++.+.+...+..+....+..++..+|...+.+|||.||..|.++||++|+||.++|+++++..+..  +||+||||.
T Consensus         3 wske~~~~a~~~~k~~~~~~~~~~~~~~y~~~~~k~wD~fy~~~~~rFfkdR~wL~~Efpel~~~~~~~~~~ilEvGCGv   82 (264)
T KOG2361|consen    3 WSKEEEAAARKKVKEQSASRVLEEEVVKYEREASKYWDTFYKIHENRFFKDRNWLLREFPELLPVDEKSAETILEVGCGV   82 (264)
T ss_pred             cCHHHHHHHHHHHhhccccccchhhhhhhhcchhhhhhhhhhhccccccchhHHHHHhhHHhhCccccChhhheeeccCC
Confidence            445556666777778888889999999999999999999999999999999999999999998865555  899999999


Q ss_pred             cccHHHHHhhCCC--CEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEEE------------
Q 009871           87 GNTIFPLIAAYPD--VFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM------------  152 (523)
Q Consensus        87 G~~~~~l~~~~~~--~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~------------  152 (523)
                      |.+..++++..++  ..|+++|+||.+|+..+++..+...++...+.|+...++..+...+++|+|++            
T Consensus        83 GNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFvLSAi~pek~  162 (264)
T KOG2361|consen   83 GNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFVLSAIHPEKM  162 (264)
T ss_pred             CcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEEEEeccChHHH
Confidence            9999999999776  99999999999999999998888888999999999887777888999999998            


Q ss_pred             -----------------------------ccccccceeeecceEEecCCeEEEeeCHHHHHHHHHhCCCcEEEEEeEeee
Q 009871          153 -----------------------------ERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGFDVEELGLCCKQ  203 (523)
Q Consensus       153 -----------------------------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~ll~~~Gf~~~~~~~~~~~  203 (523)
                                                   .|| .+.+++.+++|+++||++.|||+.+++.+++.++||..++..+.++.
T Consensus       163 ~~a~~nl~~llKPGG~llfrDYg~~DlaqlRF-~~~~~i~~nfYVRgDGT~~YfF~~eeL~~~f~~agf~~~~~~~~~rl  241 (264)
T KOG2361|consen  163 QSVIKNLRTLLKPGGSLLFRDYGRYDLAQLRF-KKGQCISENFYVRGDGTRAYFFTEEELDELFTKAGFEEVQLEVDCRL  241 (264)
T ss_pred             HHHHHHHHHHhCCCcEEEEeecccchHHHHhc-cCCceeecceEEccCCceeeeccHHHHHHHHHhcccchhcccceeee
Confidence                                         677 68889999999999999999999999999999999999999999999


Q ss_pred             eeecccCccceeEEEEEEEEec
Q 009871          204 VENRARELVMNRRWVQAVFCSS  225 (523)
Q Consensus       204 ~~~~~~~~~~~r~~~~~~~~~~  225 (523)
                      .+||++++.|.|+|+|++|+++
T Consensus       242 ~vNr~k~lkm~Rvwvq~~f~k~  263 (264)
T KOG2361|consen  242 LVNRKKQLKMYRVWVQAKFQKP  263 (264)
T ss_pred             eeehhccCccceEEEEEEeecC
Confidence            9999999999999999999987

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=99.94  E-value=2.8e-26  Score=207.40  Aligned_cols=154  Identities=30%  Similarity=0.409  Sum_probs=102.8

Q ss_pred             CCCcccccchhHHHHHHHHhcC------CCCCCCCeEEEECCCccHHHHHHHhc-CCCEEEEEcCChHHHHHHHHHHHhc
Q 009871          309 CRSTGLMLWESAHLMAAVLARN------PTIVAGKKVLELGCGCGGICSMVAAG-SADLVVATDGDSIALDLLAQNVTAN  381 (523)
Q Consensus       309 ~~~~G~~~W~~a~~la~~l~~~------~~~~~~~~VLElG~G~G~l~~~~a~~-~~~~V~~~D~~~~~l~~~~~n~~~n  381 (523)
                      ..++|..+|+++.+|++||..+      ...+++++|||||||+|..++.+++. ++.+|++||+++ ++++++.|++.|
T Consensus        13 ~~~~G~~vW~aa~~La~~l~~~~~~~~~~~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N   91 (173)
T PF10294_consen   13 GDGTGGKVWPAALVLARYLLSHSESEFNPELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELN   91 (173)
T ss_dssp             ----------HHHHHHHHHHH-------GGGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT
T ss_pred             ccCCcEEEechHHHHHHHHHHhcccccchhhcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhc
Confidence            4689999999999999999984      56789999999999999666666666 678999999988 999999999999


Q ss_pred             CCCCCCCceEEEeeecCCCCcchhhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee
Q 009871          382 LKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIF  461 (523)
Q Consensus       382 ~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~  461 (523)
                      +. .....+.+..++|++.....   .+.+.+||+|+++||+|+.+.+++|++++.+++         ++++.+++++..
T Consensus        92 ~~-~~~~~v~v~~L~Wg~~~~~~---~~~~~~~D~IlasDv~Y~~~~~~~L~~tl~~ll---------~~~~~vl~~~~~  158 (173)
T PF10294_consen   92 GS-LLDGRVSVRPLDWGDELDSD---LLEPHSFDVILASDVLYDEELFEPLVRTLKRLL---------KPNGKVLLAYKR  158 (173)
T ss_dssp             ---------EEEE--TTS-HHHH---HHS-SSBSEEEEES--S-GGGHHHHHHHHHHHB---------TT-TTEEEEEE-
T ss_pred             cc-cccccccCcEEEecCccccc---ccccccCCEEEEecccchHHHHHHHHHHHHHHh---------CCCCEEEEEeCE
Confidence            84 22368899999999852211   234568999999999999999999999999999         456669999999


Q ss_pred             cCCChhHHHHHHHHc
Q 009871          462 RQVDEPSMLSAATQC  476 (523)
Q Consensus       462 r~~~~~~~~~~~~~~  476 (523)
                      |+.....|++.++++
T Consensus       159 R~~~~~~F~~~~~k~  173 (173)
T PF10294_consen  159 RRKSEQEFFDRLKKH  173 (173)
T ss_dssp             S-TGGCHHHHHH---
T ss_pred             ecHHHHHHHHHhhhC
Confidence            887778899998763

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.93  E-value=5.2e-23  Score=217.08  Aligned_cols=336  Identities=17%  Similarity=0.131  Sum_probs=200.9

Q ss_pred             hcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEE
Q 009871           71 FSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIV  150 (523)
Q Consensus        71 ~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V  150 (523)
                      ++..++.+|||||||+|.++..+++.+  .+|+|+|+|+.|++.+++... ...++.++++|+...++  ++++++||+|
T Consensus        33 l~~~~~~~vLDlGcG~G~~~~~la~~~--~~v~giD~s~~~l~~a~~~~~-~~~~i~~~~~d~~~~~~--~~~~~~fD~I  107 (475)
T PLN02336         33 LPPYEGKSVLELGAGIGRFTGELAKKA--GQVIALDFIESVIKKNESING-HYKNVKFMCADVTSPDL--NISDGSVDLI  107 (475)
T ss_pred             cCccCCCEEEEeCCCcCHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHhc-cCCceEEEEeccccccc--CCCCCCEEEE
Confidence            333456799999999999999999884  469999999999998876432 23578999999974332  4677899999


Q ss_pred             EE-------------------ccccccceeeec--ceEEec-C----CeEEEeeCHHHHHHHHHhCCCcEEEEEeEeeee
Q 009871          151 TM-------------------ERLTGKDQKISE--NFYVRG-D----GTRAFYFSNDFLTSLFKENGFDVEELGLCCKQV  204 (523)
Q Consensus       151 ~~-------------------~~~~~~~~~~~~--~~~~~~-~----g~~~~~~~~~~l~~ll~~~Gf~~~~~~~~~~~~  204 (523)
                      ++                   .+.+++++.+.-  +.+... +    ....++.+..++.+++.++||.........-..
T Consensus       108 ~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~  187 (475)
T PLN02336        108 FSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCFHQSGDSKRKNNPTHYREPRFYTKVFKECHTRDEDGNSFELSL  187 (475)
T ss_pred             ehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCcccccCCCCeecChHHHHHHHHHheeccCCCCEEEEEE
Confidence            99                   222233333210  000000 0    011223467899999999998864433221110


Q ss_pred             eecccCccceeEEEEEEEEecCCCCCCccccchhhhhccccccchhHhhhhhccCCCCcccccchhHHHhhcCCCCCCCc
Q 009871          205 ENRARELVMNRRWVQAVFCSSGGATSSSEEASVRVDIFNQAIIEPDVAANTLKEPMNDSEVDMSEGVAFEMFGLSSFEDN  284 (523)
Q Consensus       205 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~  284 (523)
                      .         -.++...|.++........+..  ..++..+.   .-...+++++ ......+  --+..+|+..     
T Consensus       188 ~---------~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~---~~~~~~~~~~-~y~~~~i--~~~~~f~g~~-----  245 (475)
T PLN02336        188 V---------GCKCIGAYVKNKKNQNQICWLW--QKVSSTND---KGFQRFLDNV-QYKSSGI--LRYERVFGEG-----  245 (475)
T ss_pred             E---------EeechhhhhhccCCcceEEEEE--EeecCCcc---hhHHHHhhhh-ccccccH--HHHHHHhCCC-----
Confidence            0         1122333444444333331111  11111110   0011111110 0000000  0011111110     


Q ss_pred             eEEEEEEcCceEEEEEecccccccCCCcccccchhHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEE
Q 009871          285 EMIEVNLRDRSFKIEVLSKEYQHTCRSTGLMLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVAT  364 (523)
Q Consensus       285 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~G~~~W~~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~  364 (523)
                                                    ..++.+..-.+.+.+.....++.+|||+|||+|.++..++.....+|+++
T Consensus       246 ------------------------------~~v~~~v~~te~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gv  295 (475)
T PLN02336        246 ------------------------------FVSTGGLETTKEFVDKLDLKPGQKVLDVGCGIGGGDFYMAENFDVHVVGI  295 (475)
T ss_pred             ------------------------------CCCCchHHHHHHHHHhcCCCCCCEEEEEeccCCHHHHHHHHhcCCEEEEE
Confidence                                          01111122223333333345678999999999988888887655689999


Q ss_pred             cCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccC
Q 009871          365 DGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSN  444 (523)
Q Consensus       365 D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~  444 (523)
                      |+|+.+++.+++|....     ..++.+...|+...       ++++++||+|++.+++++......+++.+.++|    
T Consensus       296 DiS~~~l~~A~~~~~~~-----~~~v~~~~~d~~~~-------~~~~~~fD~I~s~~~l~h~~d~~~~l~~~~r~L----  359 (475)
T PLN02336        296 DLSVNMISFALERAIGR-----KCSVEFEVADCTKK-------TYPDNSFDVIYSRDTILHIQDKPALFRSFFKWL----  359 (475)
T ss_pred             ECCHHHHHHHHHHhhcC-----CCceEEEEcCcccC-------CCCCCCEEEEEECCcccccCCHHHHHHHHHHHc----
Confidence            99999999999887521     13567766666543       233568999999999999999999999999999    


Q ss_pred             CCCCCCCCcEEEEEEeecC-------------------CChhHHHHHHHHcCCEEEEEc
Q 009871          445 KSLREDQQPAFILCHIFRQ-------------------VDEPSMLSAATQCGFRLVDKW  484 (523)
Q Consensus       445 ~~~~~~~~g~~~l~~~~r~-------------------~~~~~~~~~~~~~gf~~~~~~  484 (523)
                           +|||.+++....+.                   .+...+.+.++++||++..+.
T Consensus       360 -----kpgG~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~aGF~~i~~~  413 (475)
T PLN02336        360 -----KPGGKVLISDYCRSPGTPSPEFAEYIKQRGYDLHDVQAYGQMLKDAGFDDVIAE  413 (475)
T ss_pred             -----CCCeEEEEEEeccCCCCCcHHHHHHHHhcCCCCCCHHHHHHHHHHCCCeeeeee
Confidence                 77999998764321                   123456677888999987654

>KOG3201 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.72  E-value=6e-18  Score=142.90  Aligned_cols=156  Identities=22%  Similarity=0.355  Sum_probs=126.6

Q ss_pred             ccccchhHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcC--CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCce
Q 009871          313 GLMLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGS--ADLVVATDGDSIALDLLAQNVTANLKPPFLAKL  390 (523)
Q Consensus       313 G~~~W~~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v  390 (523)
                      ...+||+..+|+.++++++..++|++|||||.|--++++++.+..  ...|..||.+++.++..++-+..|..+.. .  
T Consensus         7 nvciwpseeala~~~l~~~n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~-t--   83 (201)
T KOG3201|consen    7 NVCIWPSEEALAWTILRDPNKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSL-T--   83 (201)
T ss_pred             cEEecccHHHHHHHHHhchhHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhccccccc-c--
Confidence            357999999999999999999999999999999766777776653  45899999999999999998888855421 2  


Q ss_pred             EEEeeecCCCCcchhhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhHHH
Q 009871          391 ITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSML  470 (523)
Q Consensus       391 ~~~~ldw~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~~  470 (523)
                      .+..+.|-......   ......||+|+++||++..+.+..|+++++.+|         +|.|..++..++|..+...|.
T Consensus        84 sc~vlrw~~~~aqs---q~eq~tFDiIlaADClFfdE~h~sLvdtIk~lL---------~p~g~Al~fsPRRg~sL~kF~  151 (201)
T KOG3201|consen   84 SCCVLRWLIWGAQS---QQEQHTFDIILAADCLFFDEHHESLVDTIKSLL---------RPSGRALLFSPRRGQSLQKFL  151 (201)
T ss_pred             eehhhHHHHhhhHH---HHhhCcccEEEeccchhHHHHHHHHHHHHHHHh---------CcccceeEecCcccchHHHHH
Confidence            33334443221111   122458999999999999999999999999999         678888888888888899999


Q ss_pred             HHHHHcCCEEEEE
Q 009871          471 SAATQCGFRLVDK  483 (523)
Q Consensus       471 ~~~~~~gf~~~~~  483 (523)
                      +.+...||.+...
T Consensus       152 de~~~~gf~v~l~  164 (201)
T KOG3201|consen  152 DEVGTVGFTVCLE  164 (201)
T ss_pred             HHHHhceeEEEec
Confidence            9999999998653

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=99.70  E-value=4.4e-15  Score=162.46  Aligned_cols=171  Identities=16%  Similarity=0.158  Sum_probs=117.5

Q ss_pred             EEEEEEcCceEEEEEecccccccCCCcccccchhHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEc
Q 009871          286 MIEVNLRDRSFKIEVLSKEYQHTCRSTGLMLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATD  365 (523)
Q Consensus       286 ~~~~~~~~~~~~i~~~~~~~~~~~~~~G~~~W~~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D  365 (523)
                      .+.+..+|..+.|.....      ..||.. ++- ...-.++...   .++++|||||||||+++..+++.|+.+|+++|
T Consensus       500 ~~~v~e~g~~f~v~~~~~------~~tG~f-lDq-r~~R~~~~~~---~~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD  568 (702)
T PRK11783        500 FLEVTEYGAKLLVNLTDY------LDTGLF-LDH-RPTRRMIGQM---AKGKDFLNLFAYTGTASVHAALGGAKSTTTVD  568 (702)
T ss_pred             eEEEEECCEEEEEEcCCC------CcceEC-HHH-HHHHHHHHHh---cCCCeEEEcCCCCCHHHHHHHHCCCCEEEEEe
Confidence            344666777776664322      345632 211 1122333322   36789999999999999998888888999999


Q ss_pred             CChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCccEEEEccccCCC-----------CChHHHHH
Q 009871          366 GDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIP-----------EAILPLFA  434 (523)
Q Consensus       366 ~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~-----------~~~~~l~~  434 (523)
                      +|+.+++.+++|+..|++..  .++.+...|..+.     +..+ ..+||+|++....+..           ..+..++.
T Consensus       569 ~s~~al~~a~~N~~~ng~~~--~~v~~i~~D~~~~-----l~~~-~~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~  640 (702)
T PRK11783        569 MSNTYLEWAERNFALNGLSG--RQHRLIQADCLAW-----LKEA-REQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIK  640 (702)
T ss_pred             CCHHHHHHHHHHHHHhCCCc--cceEEEEccHHHH-----HHHc-CCCcCEEEECCCCCCCCCccchhhhHHHHHHHHHH
Confidence            99999999999999998742  2456655554321     1112 4589999996443321           23567888


Q ss_pred             HHHHHhhccCCCCCCCCCcEEEEEEeecCCChhHHHHHHHHcCCEEEEEcCC
Q 009871          435 TAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLVDKWPS  486 (523)
Q Consensus       435 ~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~~~~~~~~gf~~~~~~~~  486 (523)
                      .+.++|         +|||.++++...+....  ..+.+.+.|+.+..+...
T Consensus       641 ~a~~lL---------~~gG~l~~~~~~~~~~~--~~~~~~~~g~~~~~i~~~  681 (702)
T PRK11783        641 DAKRLL---------RPGGTLYFSNNKRGFKM--DEEGLAKLGLKAEEITAK  681 (702)
T ss_pred             HHHHHc---------CCCCEEEEEeCCccCCh--hHHHHHhCCCeEEEEecC
Confidence            888888         67999999887766554  377778899999988763

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=99.68  E-value=6.8e-16  Score=147.74  Aligned_cols=160  Identities=25%  Similarity=0.263  Sum_probs=123.9

Q ss_pred             ceEEEEEecccccccCCCcccccchhHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHH
Q 009871          294 RSFKIEVLSKEYQHTCRSTGLMLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDL  373 (523)
Q Consensus       294 ~~~~i~~~~~~~~~~~~~~G~~~W~~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~  373 (523)
                      ..+.|++.++.      ..|.-..|++.+..++|.+..  .++++|||+|||||.+++.+++.|+.+|+++|+||.+++.
T Consensus       129 ~~~~i~lDPGl------AFGTG~HpTT~lcL~~Le~~~--~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~a  200 (300)
T COG2264         129 DELNIELDPGL------AFGTGTHPTTSLCLEALEKLL--KKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEA  200 (300)
T ss_pred             CceEEEEcccc------ccCCCCChhHHHHHHHHHHhh--cCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHH
Confidence            35566655543      445557788888889998765  3899999999999999998889999999999999999999


Q ss_pred             HHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCc
Q 009871          374 LAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQP  453 (523)
Q Consensus       374 ~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g  453 (523)
                      ++.|+..|++..   .+...   +.....     ....++||+|+++   --.+.+..|...+..++         +|+|
T Consensus       201 a~eNa~~N~v~~---~~~~~---~~~~~~-----~~~~~~~DvIVAN---ILA~vl~~La~~~~~~l---------kpgg  257 (300)
T COG2264         201 ARENARLNGVEL---LVQAK---GFLLLE-----VPENGPFDVIVAN---ILAEVLVELAPDIKRLL---------KPGG  257 (300)
T ss_pred             HHHHHHHcCCch---hhhcc---cccchh-----hcccCcccEEEeh---hhHHHHHHHHHHHHHHc---------CCCc
Confidence            999999999863   11111   111111     1223599999998   35566778888888899         7899


Q ss_pred             EEEEEEeecCCChhHHHHHHHHcCCEEEEEcC
Q 009871          454 AFILCHIFRQVDEPSMLSAATQCGFRLVDKWP  485 (523)
Q Consensus       454 ~~~l~~~~r~~~~~~~~~~~~~~gf~~~~~~~  485 (523)
                      .++++...... .+.+.+.+.+.||.+..++.
T Consensus       258 ~lIlSGIl~~q-~~~V~~a~~~~gf~v~~~~~  288 (300)
T COG2264         258 RLILSGILEDQ-AESVAEAYEQAGFEVVEVLE  288 (300)
T ss_pred             eEEEEeehHhH-HHHHHHHHHhCCCeEeEEEe
Confidence            99999987544 56788889999999998876

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=99.68  E-value=4.4e-15  Score=156.13  Aligned_cols=297  Identities=14%  Similarity=0.155  Sum_probs=175.4

Q ss_pred             CCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC--CCcEEEEEeeccCCccCCCCCCCceeEEEE-
Q 009871           76 RKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISDDLSRQISPSSIDIVTM-  152 (523)
Q Consensus        76 ~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~-  152 (523)
                      +.+|||+|||+|.++..++...|+++|+|+|+|+.|++.|+++....  ..+++++++|+..     .+++++||+|++ 
T Consensus       139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~-----~~~~~~fDlIvsN  213 (506)
T PRK01544        139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFE-----NIEKQKFDFIVSN  213 (506)
T ss_pred             CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhh-----hCcCCCccEEEEC
Confidence            46899999999999999998888899999999999999999986533  2478999999863     234568999999 


Q ss_pred             c---------ccccccee------ee-------------c--ceEEecCCeEEEe---eCHHHHHHHHHhCCCcEEEEEe
Q 009871          153 E---------RLTGKDQK------IS-------------E--NFYVRGDGTRAFY---FSNDFLTSLFKENGFDVEELGL  199 (523)
Q Consensus       153 ~---------~~~~~~~~------~~-------------~--~~~~~~~g~~~~~---~~~~~l~~ll~~~Gf~~~~~~~  199 (523)
                      .         .+......      +.             .  ..+++++|.+++-   ...+.+.+++.+.||..+.+..
T Consensus       214 PPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~~q~~~v~~~~~~~g~~~~~~~~  293 (506)
T PRK01544        214 PPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGFKQEEAVTQIFLDHGYNIESVYK  293 (506)
T ss_pred             CCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECCchHHHHHHHHHhcCCCceEEEe
Confidence            0         00000000      00             0  1256778877652   2566788889989987655421


Q ss_pred             EeeeeeecccCccceeEEE---EEEEEecCCCCCCccccchhhhhccccccchhHhhhhhccCCCCcccccchhHHHhhc
Q 009871          200 CCKQVENRARELVMNRRWV---QAVFCSSGGATSSSEEASVRVDIFNQAIIEPDVAANTLKEPMNDSEVDMSEGVAFEMF  276 (523)
Q Consensus       200 ~~~~~~~~~~~~~~~r~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~f  276 (523)
                                +...+-+.+   +..+.+......+.       .++.++.   .+.                +..+..| 
T Consensus       294 ----------D~~g~~R~v~~~~~~~~rs~~rr~g~-------~~~~~q~---~~~----------------e~~~p~~-  336 (506)
T PRK01544        294 ----------DLQGHSRVILISPINLNRSYARRIGK-------SLSGVQQ---NLL----------------DNELPKY-  336 (506)
T ss_pred             ----------cCCCCceEEEeccccCCcceeccCCC-------CCCHHHH---HHH----------------Hhhhhhh-
Confidence                      111111222   22222211111110       0111110   000                1111000 


Q ss_pred             CCCCCCCceEEEEEEcCceEEEEEecccccccCCCcccccchhHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhc
Q 009871          277 GLSSFEDNEMIEVNLRDRSFKIEVLSKEYQHTCRSTGLMLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAG  356 (523)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~G~~~W~~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~  356 (523)
                                                          +. .|+.      +.     ...+..+||||||.|.....+|..
T Consensus       337 ------------------------------------~i-~~ek------lf-----~~~~p~~lEIG~G~G~~~~~~A~~  368 (506)
T PRK01544        337 ------------------------------------LF-SKEK------LV-----NEKRKVFLEIGFGMGEHFINQAKM  368 (506)
T ss_pred             ------------------------------------CC-CHHH------hC-----CCCCceEEEECCCchHHHHHHHHh
Confidence                                                00 0000      00     013568999999999988888888


Q ss_pred             CCC-EEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCccEEEEc--cccCCCC------
Q 009871          357 SAD-LVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGT--DVSYIPE------  427 (523)
Q Consensus       357 ~~~-~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~fD~Ii~~--d~~y~~~------  427 (523)
                      .+. .++|+|+....+..+.+.+...++    .++.+...+..   .+.  ..++++++|-|...  |.-.-..      
T Consensus       369 ~p~~~~iGiE~~~~~~~~~~~~~~~~~l----~N~~~~~~~~~---~~~--~~~~~~sv~~i~i~FPDPWpKkrh~krRl  439 (506)
T PRK01544        369 NPDALFIGVEVYLNGVANVLKLAGEQNI----TNFLLFPNNLD---LIL--NDLPNNSLDGIYILFPDPWIKNKQKKKRI  439 (506)
T ss_pred             CCCCCEEEEEeeHHHHHHHHHHHHHcCC----CeEEEEcCCHH---HHH--HhcCcccccEEEEECCCCCCCCCCccccc
Confidence            654 899999999888877777666554    34444332221   111  13456789988865  3332211      


Q ss_pred             ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhHHHHHHHHcC-CEEE
Q 009871          428 AILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCG-FRLV  481 (523)
Q Consensus       428 ~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~~~~~~~~g-f~~~  481 (523)
                      .-+.+++.+.++|         +|||.+.+..-....-. ..++.+.+.+ |+..
T Consensus       440 ~~~~fl~~~~~~L---------k~gG~i~~~TD~~~y~~-~~~~~~~~~~~f~~~  484 (506)
T PRK01544        440 FNKERLKILQDKL---------KDNGNLVFASDIENYFY-EAIELIQQNGNFEII  484 (506)
T ss_pred             cCHHHHHHHHHhc---------CCCCEEEEEcCCHHHHH-HHHHHHHhCCCeEec
Confidence            5678999999999         77999998764322111 2244445554 6654

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=99.67  E-value=6.9e-16  Score=149.56  Aligned_cols=157  Identities=24%  Similarity=0.328  Sum_probs=118.1

Q ss_pred             CceEEEEEecccccccCCCcccccchhHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHH
Q 009871          293 DRSFKIEVLSKEYQHTCRSTGLMLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALD  372 (523)
Q Consensus       293 ~~~~~i~~~~~~~~~~~~~~G~~~W~~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~  372 (523)
                      +..+.|...++.      ..|.-..+++.+..++|....  .++++|||+|||||.+++.+++.|+++|+++|++|.+++
T Consensus       127 ~~~~~I~idPg~------AFGTG~H~TT~lcl~~l~~~~--~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~  198 (295)
T PF06325_consen  127 PDEIVIEIDPGM------AFGTGHHPTTRLCLELLEKYV--KPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVE  198 (295)
T ss_dssp             TTSEEEEESTTS------SS-SSHCHHHHHHHHHHHHHS--STTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHH
T ss_pred             CCcEEEEECCCC------cccCCCCHHHHHHHHHHHHhc--cCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHH
Confidence            344555554443      566668899999999998874  578899999999999988888899999999999999999


Q ss_pred             HHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCC
Q 009871          373 LLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQ  452 (523)
Q Consensus       373 ~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~  452 (523)
                      .+++|+..|++.   .++.+.    ...       +....+||+|+++   -..+.+..++..+.++|         +|+
T Consensus       199 ~a~~N~~~N~~~---~~~~v~----~~~-------~~~~~~~dlvvAN---I~~~vL~~l~~~~~~~l---------~~~  252 (295)
T PF06325_consen  199 AARENAELNGVE---DRIEVS----LSE-------DLVEGKFDLVVAN---ILADVLLELAPDIASLL---------KPG  252 (295)
T ss_dssp             HHHHHHHHTT-T---TCEEES----CTS-------CTCCS-EEEEEEE---S-HHHHHHHHHHCHHHE---------EEE
T ss_pred             HHHHHHHHcCCC---eeEEEE----Eec-------ccccccCCEEEEC---CCHHHHHHHHHHHHHhh---------CCC
Confidence            999999999997   344432    111       1124799999998   44555677888888888         679


Q ss_pred             cEEEEEEeecCCChhHHHHHHHHcCCEEEEEcC
Q 009871          453 PAFILCHIFRQVDEPSMLSAATQCGFRLVDKWP  485 (523)
Q Consensus       453 g~~~l~~~~r~~~~~~~~~~~~~~gf~~~~~~~  485 (523)
                      |.++++.... ...+.+.+.+++ ||++.+...
T Consensus       253 G~lIlSGIl~-~~~~~v~~a~~~-g~~~~~~~~  283 (295)
T PF06325_consen  253 GYLILSGILE-EQEDEVIEAYKQ-GFELVEERE  283 (295)
T ss_dssp             EEEEEEEEEG-GGHHHHHHHHHT-TEEEEEEEE
T ss_pred             CEEEEccccH-HHHHHHHHHHHC-CCEEEEEEE
Confidence            9999998874 345678888866 999987654

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=99.64  E-value=2.1e-15  Score=148.77  Aligned_cols=168  Identities=17%  Similarity=0.206  Sum_probs=112.2

Q ss_pred             CCCCCChHHHHHHHHHhhHHHHH------HHHhcccccccchhhhHHHHhhh---hcCCCCCeEEEECCCccccHHHHHh
Q 009871           25 PNTGVSPFWRDKYEREAKKYWDL------FYKRHQDRFFKDRHYLDKEWGRY---FSGAGRKDVLEVGCGAGNTIFPLIA   95 (523)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~Wd~------~y~~~~~~f~~~~~~l~~~~~~~---~~~~~~~~iLDiGcG~G~~~~~l~~   95 (523)
                      ....+++.+-.+|++.+..||+.      ++.-+..+...-+..+.+.+...   ....++.+|||||||+|.++..|++
T Consensus        72 ~~~s~~~~e~~~f~~~a~~WW~~~g~~~~lh~~N~~R~~~i~~~l~~~~~~~~~~~~~~~g~~ILDIGCG~G~~s~~La~  151 (322)
T PLN02396         72 TTTSLNEDELAKFSAIADTWWHSEGPFKPLHQMNPTRLAFIRSTLCRHFSKDPSSAKPFEGLKFIDIGCGGGLLSEPLAR  151 (322)
T ss_pred             CCCCCCHHHHHHHHHHHHHhcCCCCCchHHHHhChHHHHHHHHHHHHHhccchhhccCCCCCEEEEeeCCCCHHHHHHHH
Confidence            33467888889999999999983      22222221111111122222111   1123567999999999999999987


Q ss_pred             hCCCCEEEEEeCCHHHHHHHHhccccC--CCcEEEEEeeccCCccCCCCCCCceeEEEE-----------------cccc
Q 009871           96 AYPDVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISDDLSRQISPSSIDIVTM-----------------ERLT  156 (523)
Q Consensus        96 ~~~~~~v~gvD~S~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~-----------------~~~~  156 (523)
                      .  +++|+|||+|++|++.|+++....  ..+++++++|+.++    ++++++||+|++                 .+++
T Consensus       152 ~--g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l----~~~~~~FD~Vi~~~vLeHv~d~~~~L~~l~r~L  225 (322)
T PLN02396        152 M--GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKL----ADEGRKFDAVLSLEVIEHVANPAEFCKSLSALT  225 (322)
T ss_pred             c--CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHh----hhccCCCCEEEEhhHHHhcCCHHHHHHHHHHHc
Confidence            5  678999999999999999875432  24799999999876    566789999999                 3444


Q ss_pred             ccceeeecceE-------------------EecCCeE--EEeeCHHHHHHHHHhCCCcEEEEE
Q 009871          157 GKDQKISENFY-------------------VRGDGTR--AFYFSNDFLTSLFKENGFDVEELG  198 (523)
Q Consensus       157 ~~~~~~~~~~~-------------------~~~~g~~--~~~~~~~~l~~ll~~~Gf~~~~~~  198 (523)
                      ++++.+.-...                   ..+.|+.  ..+++++++..+++++||+++++.
T Consensus       226 kPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf~i~~~~  288 (322)
T PLN02396        226 IPNGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRASVDVKEMA  288 (322)
T ss_pred             CCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCCeEEEEe
Confidence            55554431100                   0122332  235799999999999999987663

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.63  E-value=6.1e-15  Score=137.76  Aligned_cols=124  Identities=18%  Similarity=0.206  Sum_probs=95.7

Q ss_pred             hhhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC-CCcEEEEEeeccCCccCCCCCCCce
Q 009871           69 RYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT-ETRVSTFVCDLISDDLSRQISPSSI  147 (523)
Q Consensus        69 ~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~-~~~v~~~~~d~~~~~~~~~~~~~~f  147 (523)
                      +.....++.+|||||||||..+..+++..+.++|+|+|+|+.|++.|+++.... ..+++|+++|++++    ||++++|
T Consensus        45 ~~~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~L----Pf~D~sF  120 (238)
T COG2226          45 SLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENL----PFPDNSF  120 (238)
T ss_pred             HhhCCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhC----CCCCCcc
Confidence            333334789999999999999999999977899999999999999999987542 23499999999999    8999999


Q ss_pred             eEEEE-----------------ccccccceeeecceEEecCC--------------------eEE---------------
Q 009871          148 DIVTM-----------------ERLTGKDQKISENFYVRGDG--------------------TRA---------------  175 (523)
Q Consensus       148 D~V~~-----------------~~~~~~~~~~~~~~~~~~~g--------------------~~~---------------  175 (523)
                      |+|++                 .|++++++++....+.++..                    .+.               
T Consensus       121 D~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle~~~p~~~~~~~~~~~~~~~~v~P~~g~~~~~~~~~y~yL~eSi~  200 (238)
T COG2226         121 DAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSKPDNPVLRKAYILYYFKYVLPLIGKLVAKDAEAYEYLAESIR  200 (238)
T ss_pred             CEEEeeehhhcCCCHHHHHHHHHHhhcCCeEEEEEEcCCCCchhhHHHHHHHHHHhHhhhhceeeecChHHHHHHHHHHH
Confidence            99999                 56666666544322222221                    110               


Q ss_pred             EeeCHHHHHHHHHhCCCcEEE
Q 009871          176 FYFSNDFLTSLFKENGFDVEE  196 (523)
Q Consensus       176 ~~~~~~~l~~ll~~~Gf~~~~  196 (523)
                      .+.+.+++.+.++++||..+.
T Consensus       201 ~~p~~~~l~~~~~~~gf~~i~  221 (238)
T COG2226         201 RFPDQEELKQMIEKAGFEEVR  221 (238)
T ss_pred             hCCCHHHHHHHHHhcCceEEe
Confidence            024678899999999999766

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=99.63  E-value=7.1e-15  Score=132.95  Aligned_cols=142  Identities=18%  Similarity=0.211  Sum_probs=106.2

Q ss_pred             EEEEEecccccccCCCcccccchhHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCC-EEEEEcCChHHHHHH
Q 009871          296 FKIEVLSKEYQHTCRSTGLMLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSAD-LVVATDGDSIALDLL  374 (523)
Q Consensus       296 ~~i~~~~~~~~~~~~~~G~~~W~~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~-~V~~~D~~~~~l~~~  374 (523)
                      +++.+.+++++..      .+=.++.+|++++..+    ++.+|||||||+|.++..+++.++. +|+++|+++.+++.+
T Consensus         2 ~~~~~~~gvFs~~------~~d~~t~lL~~~l~~~----~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a   71 (170)
T PF05175_consen    2 LEFITHPGVFSPP------RLDAGTRLLLDNLPKH----KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELA   71 (170)
T ss_dssp             EEEEEETTSTTTT------SHHHHHHHHHHHHHHH----TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHH
T ss_pred             EEEEECCCeeCCC------CCCHHHHHHHHHHhhc----cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHH
Confidence            5667667666422      1224677888888765    5679999999999999999988766 899999999999999


Q ss_pred             HHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCccEEEEccccCCCC-----ChHHHHHHHHHHhhccCCCCCC
Q 009871          375 AQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPE-----AILPLFATAKELTASSNKSLRE  449 (523)
Q Consensus       375 ~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~-----~~~~l~~~l~~ll~~~~~~~~~  449 (523)
                      ++|+..|+..   . +.+...|+.+.        ..+.+||+|+++..++...     ....+++...++|         
T Consensus        72 ~~n~~~n~~~---~-v~~~~~d~~~~--------~~~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~L---------  130 (170)
T PF05175_consen   72 KRNAERNGLE---N-VEVVQSDLFEA--------LPDGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYL---------  130 (170)
T ss_dssp             HHHHHHTTCT---T-EEEEESSTTTT--------CCTTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHE---------
T ss_pred             HHHHHhcCcc---c-ccccccccccc--------ccccceeEEEEccchhcccccchhhHHHHHHHHHHhc---------
Confidence            9999999885   2 77776666543        2357999999998876654     3788899999999         


Q ss_pred             CCCcEEEEEEeecCCChhHH
Q 009871          450 DQQPAFILCHIFRQVDEPSM  469 (523)
Q Consensus       450 ~~~g~~~l~~~~r~~~~~~~  469 (523)
                      +|+|.++++... .......
T Consensus       131 k~~G~l~lv~~~-~~~~~~~  149 (170)
T PF05175_consen  131 KPGGRLFLVINS-HLGYERL  149 (170)
T ss_dssp             EEEEEEEEEEET-TSCHHHH
T ss_pred             cCCCEEEEEeec-CCChHHH
Confidence            679999887764 3343333

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=99.63  E-value=1e-14  Score=136.08  Aligned_cols=160  Identities=15%  Similarity=0.134  Sum_probs=124.2

Q ss_pred             cCceEEEEEecccccccCCCcccccchhHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcC-CCEEEEEcCChHH
Q 009871          292 RDRSFKIEVLSKEYQHTCRSTGLMLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIA  370 (523)
Q Consensus       292 ~~~~~~i~~~~~~~~~~~~~~G~~~W~~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~-~~~V~~~D~~~~~  370 (523)
                      .+..+.|.+...         |...=-.+++|++|..-    ...++|||||||+|.+++++|++. ..+|+++|+++++
T Consensus        14 ~~~~~~I~q~~~---------~~~~~~DaiLL~~~~~~----~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~   80 (248)
T COG4123          14 TFKQFFIIQDRC---------GFRYGTDAILLAAFAPV----PKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEA   80 (248)
T ss_pred             cccceEEEeCCC---------ccccccHHHHHHhhccc----ccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHH
Confidence            345566665433         34444567889988732    247899999999999999999884 4799999999999


Q ss_pred             HHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCccEEEEccccCCCC------------------ChHHH
Q 009871          371 LDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPE------------------AILPL  432 (523)
Q Consensus       371 l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~------------------~~~~l  432 (523)
                      .+.|++|++.|...   .++++...|..+...     .....+||+|+++...|...                  .++.+
T Consensus        81 a~~A~~nv~ln~l~---~ri~v~~~Di~~~~~-----~~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~  152 (248)
T COG4123          81 AEMAQRNVALNPLE---ERIQVIEADIKEFLK-----ALVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDL  152 (248)
T ss_pred             HHHHHHHHHhCcch---hceeEehhhHHHhhh-----cccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHH
Confidence            99999999999887   677777666544311     12234799999998887622                  58999


Q ss_pred             HHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhHHHHHHHHcCCEEEEE
Q 009871          433 FATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLVDK  483 (523)
Q Consensus       433 ~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~~~~~~~~gf~~~~~  483 (523)
                      ++...++|         +++|.+.++++.  ....++++.+++++|.+.++
T Consensus       153 i~~a~~~l---------k~~G~l~~V~r~--erl~ei~~~l~~~~~~~k~i  192 (248)
T COG4123         153 IRAAAKLL---------KPGGRLAFVHRP--ERLAEIIELLKSYNLEPKRI  192 (248)
T ss_pred             HHHHHHHc---------cCCCEEEEEecH--HHHHHHHHHHHhcCCCceEE
Confidence            99999999         779999998744  45567999999999999887

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=99.61  E-value=2.2e-15  Score=132.23  Aligned_cols=130  Identities=23%  Similarity=0.306  Sum_probs=104.8

Q ss_pred             CCcccccchhHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCc
Q 009871          310 RSTGLMLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAK  389 (523)
Q Consensus       310 ~~~G~~~W~~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~  389 (523)
                      +.+++..|.+++.+|+|+..+|+..+|++|||+|+|+|..++..+..|++.|+++|++|..+..++.|+..|++.     
T Consensus        54 Ppfwa~~WagG~~lAR~i~~~PetVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~-----  128 (218)
T COG3897          54 PPFWAFAWAGGQVLARYIDDHPETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVS-----  128 (218)
T ss_pred             chHHHHHHhhhHHHHHHHhcCccccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccce-----
Confidence            347789999999999999999999999999999999996666666669999999999999999999999999864     


Q ss_pred             eEEEeeecCCCCcchhhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecC
Q 009871          390 LITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ  463 (523)
Q Consensus       390 v~~~~ldw~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~  463 (523)
                      +.+...|...          .+..||+|+++|++|+......++....++.         ..|-.+++..+.|.
T Consensus       129 i~~~~~d~~g----------~~~~~Dl~LagDlfy~~~~a~~l~~~~~~l~---------~~g~~vlvgdp~R~  183 (218)
T COG3897         129 ILFTHADLIG----------SPPAFDLLLAGDLFYNHTEADRLIPWKDRLA---------EAGAAVLVGDPGRA  183 (218)
T ss_pred             eEEeeccccC----------CCcceeEEEeeceecCchHHHHHHHHHHHHH---------hCCCEEEEeCCCCC
Confidence            3333322221          3568999999999999999999999666665         23555555555554

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.58  E-value=1.9e-15  Score=142.91  Aligned_cols=80  Identities=21%  Similarity=0.241  Sum_probs=57.0

Q ss_pred             hhhcCCCCCeEEEECCCccccHHHHHhh-CCCCEEEEEeCCHHHHHHHHhccccC-CCcEEEEEeeccCCccCCCCCCCc
Q 009871           69 RYFSGAGRKDVLEVGCGAGNTIFPLIAA-YPDVFVYACDFSPRAVNLVMTHKDFT-ETRVSTFVCDLISDDLSRQISPSS  146 (523)
Q Consensus        69 ~~~~~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~v~gvD~S~~~l~~a~~~~~~~-~~~v~~~~~d~~~~~~~~~~~~~~  146 (523)
                      +.+...++.+|||+|||||..+..++++ .++++|+|+|+|+.|++.|+++.... ..+++++++|++++    |+++++
T Consensus        41 ~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~l----p~~d~s  116 (233)
T PF01209_consen   41 KLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDL----PFPDNS  116 (233)
T ss_dssp             HHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB------S-TT-
T ss_pred             hccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHh----cCCCCc
Confidence            3444567889999999999999999987 56789999999999999999976532 34899999999998    889999


Q ss_pred             eeEEEE
Q 009871          147 IDIVTM  152 (523)
Q Consensus       147 fD~V~~  152 (523)
                      ||+|++
T Consensus       117 fD~v~~  122 (233)
T PF01209_consen  117 FDAVTC  122 (233)
T ss_dssp             EEEEEE
T ss_pred             eeEEEH
Confidence            999999

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=99.57  E-value=7.7e-14  Score=132.79  Aligned_cols=146  Identities=18%  Similarity=0.188  Sum_probs=112.9

Q ss_pred             cCceEEEEEecccccccCCCcccccchhHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCC-CEEEEEcCChHH
Q 009871          292 RDRSFKIEVLSKEYQHTCRSTGLMLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSA-DLVVATDGDSIA  370 (523)
Q Consensus       292 ~~~~~~i~~~~~~~~~~~~~~G~~~W~~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~-~~V~~~D~~~~~  370 (523)
                      .+.++++...+++|++..-+.|          ++.|+++.....+.+|||||||.|.+++.+++..+ .+|+++|.|..+
T Consensus       125 ~~~~~~~~t~pGVFS~~~lD~G----------S~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~A  194 (300)
T COG2813         125 LGHELTFKTLPGVFSRDKLDKG----------SRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARA  194 (300)
T ss_pred             ccCceEEEeCCCCCcCCCcChH----------HHHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHH
Confidence            4889999999999999988998          77777766555556999999999999999999864 689999999999


Q ss_pred             HHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCccEEEEccccCCCCC-h----HHHHHHHHHHhhccCC
Q 009871          371 LDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPEA-I----LPLFATAKELTASSNK  445 (523)
Q Consensus       371 l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~-~----~~l~~~l~~ll~~~~~  445 (523)
                      ++.+++|+..|++...    .+..-+..+        +. .++||+||++..++.-.. .    ..++....+.|     
T Consensus       195 v~~ar~Nl~~N~~~~~----~v~~s~~~~--------~v-~~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L-----  256 (300)
T COG2813         195 VESARKNLAANGVENT----EVWASNLYE--------PV-EGKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHL-----  256 (300)
T ss_pred             HHHHHHhHHHcCCCcc----EEEEecccc--------cc-cccccEEEeCCCccCCcchhHHHHHHHHHHHHHhh-----
Confidence            9999999999988631    222111111        12 238999999999987432 3    37999999999     


Q ss_pred             CCCCCCCcEEEEEEeecCCChhHHH
Q 009871          446 SLREDQQPAFILCHIFRQVDEPSML  470 (523)
Q Consensus       446 ~~~~~~~g~~~l~~~~r~~~~~~~~  470 (523)
                          ++||.+++... |...-+..+
T Consensus       257 ----~~gGeL~iVan-~~l~y~~~L  276 (300)
T COG2813         257 ----KPGGELWIVAN-RHLPYEKKL  276 (300)
T ss_pred             ----ccCCEEEEEEc-CCCChHHHH
Confidence                67999988876 444443333

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=99.57  E-value=4e-14  Score=136.96  Aligned_cols=125  Identities=20%  Similarity=0.255  Sum_probs=91.3

Q ss_pred             hhcCCCCCeEEEECCCccccHHHHHhh-CCCCEEEEEeCCHHHHHHHHhccc----cCCCcEEEEEeeccCCccCCCCCC
Q 009871           70 YFSGAGRKDVLEVGCGAGNTIFPLIAA-YPDVFVYACDFSPRAVNLVMTHKD----FTETRVSTFVCDLISDDLSRQISP  144 (523)
Q Consensus        70 ~~~~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~v~gvD~S~~~l~~a~~~~~----~~~~~v~~~~~d~~~~~~~~~~~~  144 (523)
                      .+...++.+|||+|||+|.++..++++ .+..+|+|+|+|++|++.|+++..    ....+++++++|+.++    |+++
T Consensus        68 ~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~l----p~~~  143 (261)
T PLN02233         68 WSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDL----PFDD  143 (261)
T ss_pred             HhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccC----CCCC
Confidence            344457889999999999999999887 456789999999999999987642    1235799999999987    7888


Q ss_pred             CceeEEEE-----------------ccccccceeeecceEEecCC-------------------e-----E---------
Q 009871          145 SSIDIVTM-----------------ERLTGKDQKISENFYVRGDG-------------------T-----R---------  174 (523)
Q Consensus       145 ~~fD~V~~-----------------~~~~~~~~~~~~~~~~~~~g-------------------~-----~---------  174 (523)
                      ++||+|++                 .+.+++++++.-..+.++..                   .     .         
T Consensus       144 ~sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~s~  223 (261)
T PLN02233        144 CYFDAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFNKSTQPFTTSMQEWMIDNVVVPVATGYGLAKEYEYLKSSI  223 (261)
T ss_pred             CCEeEEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEECCCCCcHHHHHHHHHHHhhhhhHHHHHhCChHHHHHHHHHH
Confidence            99999998                 34445555542111111110                   0     0         


Q ss_pred             EEeeCHHHHHHHHHhCCCcEEEEE
Q 009871          175 AFYFSNDFLTSLFKENGFDVEELG  198 (523)
Q Consensus       175 ~~~~~~~~l~~ll~~~Gf~~~~~~  198 (523)
                      ..+++.+++.++++++||+.++..
T Consensus       224 ~~f~s~~el~~ll~~aGF~~~~~~  247 (261)
T PLN02233        224 NEYLTGEELEKLALEAGFSSAKHY  247 (261)
T ss_pred             HhcCCHHHHHHHHHHCCCCEEEEE
Confidence            124588999999999999987543

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=99.55  E-value=5e-15  Score=135.60  Aligned_cols=119  Identities=22%  Similarity=0.230  Sum_probs=86.4

Q ss_pred             CCCChHHHHHHHHHhhHHHHHHHHhcc-cccccch-hhhHHHHhhhhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEE
Q 009871           27 TGVSPFWRDKYEREAKKYWDLFYKRHQ-DRFFKDR-HYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYA  104 (523)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~Wd~~y~~~~-~~f~~~~-~~l~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~g  104 (523)
                      ..++..+.++|++.+..|||...+-.. ..+..-| .|+......... ..+.+|||||||-|.++..|++.  ++.|+|
T Consensus        10 ~~id~~e~~~F~~la~~wwd~~g~f~~LH~~N~~rl~~i~~~~~~~~~-l~g~~vLDvGCGgG~Lse~mAr~--Ga~Vtg   86 (243)
T COG2227          10 QNVDYKELDKFEALASRWWDPEGEFKPLHKINPLRLDYIREVARLRFD-LPGLRVLDVGCGGGILSEPLARL--GASVTG   86 (243)
T ss_pred             ccCCHHHHHHHHHHHhhhcCCCCceeeeeeeccchhhhhhhhhhcccC-CCCCeEEEecCCccHhhHHHHHC--CCeeEE
Confidence            357788999999999999984211100 1111111 122222221111 47899999999999999999999  577999


Q ss_pred             EeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871          105 CDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM  152 (523)
Q Consensus       105 vD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~  152 (523)
                      +|+|+++|+.|+.++...+..+++.+..++++    ....++||+|+|
T Consensus        87 iD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl----~~~~~~FDvV~c  130 (243)
T COG2227          87 IDASEKPIEVAKLHALESGVNIDYRQATVEDL----ASAGGQFDVVTC  130 (243)
T ss_pred             ecCChHHHHHHHHhhhhccccccchhhhHHHH----HhcCCCccEEEE
Confidence            99999999999999877777788999888866    233489999999

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=99.54  E-value=3.2e-13  Score=135.59  Aligned_cols=149  Identities=15%  Similarity=0.147  Sum_probs=110.0

Q ss_pred             eEEEEEEcCceEEEEEecccccccCCCcccccchhHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcC-CCEEEE
Q 009871          285 EMIEVNLRDRSFKIEVLSKEYQHTCRSTGLMLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGS-ADLVVA  363 (523)
Q Consensus       285 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~G~~~W~~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~-~~~V~~  363 (523)
                      ....+.+.+..++|...+++|+...-+.|          +++|.++.....+.+|||||||+|.++..+++++ ..+|++
T Consensus       188 ~~~~~~~~~~~~~~~~~~gVFs~~~LD~G----------trllL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~  257 (378)
T PRK15001        188 QTVSWKLEGTDWTIHNHANVFSRTGLDIG----------ARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVF  257 (378)
T ss_pred             ceeEEEEcCceEEEEecCCccCCCCcChH----------HHHHHHhCCcccCCeEEEEeccccHHHHHHHHhCCCCEEEE
Confidence            45677788999999999999987766766          4445444333345699999999999998888875 459999


Q ss_pred             EcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCccEEEEccccCCCC-----ChHHHHHHHHH
Q 009871          364 TDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPE-----AILPLFATAKE  438 (523)
Q Consensus       364 ~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~-----~~~~l~~~l~~  438 (523)
                      +|.|+.|++.+++|++.|+... ..++.+..-|...        .+.+.+||+|+++..++...     ....+++.+.+
T Consensus       258 vD~S~~Av~~A~~N~~~n~~~~-~~~v~~~~~D~l~--------~~~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~  328 (378)
T PRK15001        258 VDESPMAVASSRLNVETNMPEA-LDRCEFMINNALS--------GVEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARR  328 (378)
T ss_pred             EECCHHHHHHHHHHHHHcCccc-CceEEEEEccccc--------cCCCCCEEEEEECcCcccCccCCHHHHHHHHHHHHH
Confidence            9999999999999999987531 1244443322211        12245899999987765432     34678888999


Q ss_pred             HhhccCCCCCCCCCcEEEEEEee
Q 009871          439 LTASSNKSLREDQQPAFILCHIF  461 (523)
Q Consensus       439 ll~~~~~~~~~~~~g~~~l~~~~  461 (523)
                      .|         +|||.+++....
T Consensus       329 ~L---------kpGG~L~iV~nr  342 (378)
T PRK15001        329 CL---------KINGELYIVANR  342 (378)
T ss_pred             hc---------ccCCEEEEEEec
Confidence            99         779999998643

>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]

Probab=99.54  E-value=5.7e-14  Score=131.11  Aligned_cols=164  Identities=24%  Similarity=0.213  Sum_probs=119.0

Q ss_pred             cCCCcccccchhHHHHHHHHhcCCC------CCC-----CCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHH
Q 009871          308 TCRSTGLMLWESAHLMAAVLARNPT------IVA-----GKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQ  376 (523)
Q Consensus       308 ~~~~~G~~~W~~a~~la~~l~~~~~------~~~-----~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~  376 (523)
                      ........+|+++-.++.++..+..      -..     ..+|||||+|||..++.+|..+...|+.+|. +..+..++.
T Consensus        48 ~~~~~~~~~w~~~~~la~~~~~~~~~~~~~~~~~g~~~~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~-~~~~~~L~~  126 (248)
T KOG2793|consen   48 LEQGISAYLWSCATTLAQPLWERRRDSELTATLIGFKTKYINVLELGSGTGLVGILAALLLGAEVVLTDL-PKVVENLKF  126 (248)
T ss_pred             cccceeeEEeehhhccchhhhhhhcCchhhhccccccccceeEEEecCCccHHHHHHHHHhcceeccCCc-hhhHHHHHH
Confidence            3457778999999999998876543      122     3469999999995455555557789999999 678888888


Q ss_pred             HHHhcCCCCC--CCceEEEeeecCCCCcchhhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcE
Q 009871          377 NVTANLKPPF--LAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPA  454 (523)
Q Consensus       377 n~~~n~~~~~--~~~v~~~~ldw~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~  454 (523)
                      |...|+....  ...+.+..++|+........   .+..||+|+++||+|.++....|+.++..+|         ..++.
T Consensus       127 ~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~---~~~~~DlilasDvvy~~~~~e~Lv~tla~ll---------~~~~~  194 (248)
T KOG2793|consen  127 NRDKNNIALNQLGGSVIVAILVWGNALDVSFR---LPNPFDLILASDVVYEEESFEGLVKTLAFLL---------AKDGT  194 (248)
T ss_pred             hhhhhhhhhhhcCCceeEEEEecCCcccHhhc---cCCcccEEEEeeeeecCCcchhHHHHHHHHH---------hcCCe
Confidence            8777766432  13789999999998654332   1212999999999999999999999999999         33668


Q ss_pred             EEEEEeecCCChhH---HHHHHHHcCCEEEEEc
Q 009871          455 FILCHIFRQVDEPS---MLSAATQCGFRLVDKW  484 (523)
Q Consensus       455 ~~l~~~~r~~~~~~---~~~~~~~~gf~~~~~~  484 (523)
                      +++.+..|+....+   ++.......|.+....
T Consensus       195 i~l~~~lr~~~~~~~~~~~~~~~~~~~~v~~~~  227 (248)
T KOG2793|consen  195 IFLAYPLRRDAAWEIEVLLFKKDLKIFDVVQES  227 (248)
T ss_pred             EEEEEecccchHHHHHHHHhhhhhccceeeeEe
Confidence            88888888753322   2333333455555443

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=99.52  E-value=3.9e-13  Score=122.88  Aligned_cols=138  Identities=21%  Similarity=0.183  Sum_probs=104.0

Q ss_pred             HHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCC
Q 009871          320 AHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGN  399 (523)
Q Consensus       320 a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~  399 (523)
                      +.+|.+++..    .++.+|||+|||+|.++..++..+. +|+++|+++.+++.+++|+..|+.     .+.+...|+.+
T Consensus         8 ~~~l~~~l~~----~~~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~-----~~~~~~~d~~~   77 (179)
T TIGR00537         8 SLLLEANLRE----LKPDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELRENAKLNNV-----GLDVVMTDLFK   77 (179)
T ss_pred             HHHHHHHHHh----cCCCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCC-----ceEEEEccccc
Confidence            3555565532    3567899999999988888888776 899999999999999999998764     24555555543


Q ss_pred             CCcchhhhhhcCCCccEEEEccccCCCCC---------------------hHHHHHHHHHHhhccCCCCCCCCCcEEEEE
Q 009871          400 RDHIEAIKEENNEGFEVILGTDVSYIPEA---------------------ILPLFATAKELTASSNKSLREDQQPAFILC  458 (523)
Q Consensus       400 ~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~---------------------~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~  458 (523)
                      .         ..++||+|+++...+....                     +..+++.+.++|         +|+|.++++
T Consensus        78 ~---------~~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L---------k~gG~~~~~  139 (179)
T TIGR00537        78 G---------VRGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEIL---------KEGGRVQLI  139 (179)
T ss_pred             c---------cCCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhh---------CCCCEEEEE
Confidence            2         1348999999876553221                     467788899999         679999887


Q ss_pred             EeecCCChhHHHHHHHHcCCEEEEEcCC
Q 009871          459 HIFRQVDEPSMLSAATQCGFRLVDKWPS  486 (523)
Q Consensus       459 ~~~r~~~~~~~~~~~~~~gf~~~~~~~~  486 (523)
                      ... ......+++.+++.||.++.+...
T Consensus       140 ~~~-~~~~~~~~~~l~~~gf~~~~~~~~  166 (179)
T TIGR00537       140 QSS-LNGEPDTFDKLDERGFRYEIVAER  166 (179)
T ss_pred             Eec-cCChHHHHHHHHhCCCeEEEEEEe
Confidence            754 233567899999999999988663

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>PLN02244 tocopherol O-methyltransferase

Probab=99.51  E-value=6e-13  Score=133.79  Aligned_cols=133  Identities=11%  Similarity=0.119  Sum_probs=104.9

Q ss_pred             CCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCC
Q 009871          334 VAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG  413 (523)
Q Consensus       334 ~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~  413 (523)
                      .++.+|||||||+|.++..++.....+|+++|+++.+++.+++++..++..   .++.+...|..+.       ++++++
T Consensus       117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~---~~v~~~~~D~~~~-------~~~~~~  186 (340)
T PLN02244        117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLS---DKVSFQVADALNQ-------PFEDGQ  186 (340)
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCC---CceEEEEcCcccC-------CCCCCC
Confidence            467899999999998888888876668999999999999999999887664   4566666555432       234679


Q ss_pred             ccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecC-----------------------------C
Q 009871          414 FEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ-----------------------------V  464 (523)
Q Consensus       414 fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~-----------------------------~  464 (523)
                      ||+|++..++++..+...+++.+.++|         +|||.++++...+.                             .
T Consensus       187 FD~V~s~~~~~h~~d~~~~l~e~~rvL---------kpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~p~~~  257 (340)
T PLN02244        187 FDLVWSMESGEHMPDKRKFVQELARVA---------APGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYYLPAWC  257 (340)
T ss_pred             ccEEEECCchhccCCHHHHHHHHHHHc---------CCCcEEEEEEecccccccccccCCHHHHHHHHHHHhhccCCCCC
Confidence            999999999999888999999999999         77999988653211                             0


Q ss_pred             ChhHHHHHHHHcCCEEEEEcC
Q 009871          465 DEPSMLSAATQCGFRLVDKWP  485 (523)
Q Consensus       465 ~~~~~~~~~~~~gf~~~~~~~  485 (523)
                      +...+.+.+++.||...++..
T Consensus       258 s~~~~~~~l~~aGf~~v~~~d  278 (340)
T PLN02244        258 STSDYVKLAESLGLQDIKTED  278 (340)
T ss_pred             CHHHHHHHHHHCCCCeeEeee
Confidence            234566778899999877643

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=99.51  E-value=1.5e-13  Score=119.03  Aligned_cols=119  Identities=19%  Similarity=0.260  Sum_probs=87.2

Q ss_pred             CCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCC--CcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871           75 GRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQISPSSIDIVTM  152 (523)
Q Consensus        75 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~V~~  152 (523)
                      +..+|||+|||+|.++..|++..-...++|+|+|++++++|+..+....  ..++|.+.|+.+.    .+..++||+|+-
T Consensus        67 ~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~----~~~~~qfdlvlD  142 (227)
T KOG1271|consen   67 QADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDP----DFLSGQFDLVLD  142 (227)
T ss_pred             cccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCC----cccccceeEEee
Confidence            4449999999999999999999545569999999999999987665432  4499999999976    456788998876


Q ss_pred             ------cccc--ccceeeec-----ceEEecCCeEEEe---eCHHHHHHHHHhCCCcEEEE
Q 009871          153 ------ERLT--GKDQKISE-----NFYVRGDGTRAFY---FSNDFLTSLFKENGFDVEEL  197 (523)
Q Consensus       153 ------~~~~--~~~~~~~~-----~~~~~~~g~~~~~---~~~~~l~~ll~~~Gf~~~~~  197 (523)
                            ..+.  ....++.-     .-.++++|.+...   ||.+|+.+.+...||.....
T Consensus       143 KGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T~dELv~~f~~~~f~~~~t  203 (227)
T KOG1271|consen  143 KGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFTKDELVEEFENFNFEYLST  203 (227)
T ss_pred             cCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCccHHHHHHHHhcCCeEEEEe
Confidence                  1110  11111100     0146788888764   69999999999888876443

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=99.51  E-value=9.8e-13  Score=130.82  Aligned_cols=173  Identities=18%  Similarity=0.220  Sum_probs=118.5

Q ss_pred             cchhHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEee
Q 009871          316 LWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRL  395 (523)
Q Consensus       316 ~W~~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l  395 (523)
                      -|.+.......+ .+....++++|||||||+|.++..++..++..|+++|.|+.++..++......+.   ..++.+...
T Consensus       104 ew~s~~k~~~l~-~~l~~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~---~~~i~~~~~  179 (322)
T PRK15068        104 EWRSDWKWDRVL-PHLSPLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGN---DQRAHLLPL  179 (322)
T ss_pred             eehHHhHHHHHH-HhhCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCC---CCCeEEEeC
Confidence            455544433322 2333457899999999999988888888888899999999888655433222111   135666655


Q ss_pred             ecCCCCcchhhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec-------------
Q 009871          396 EWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFR-------------  462 (523)
Q Consensus       396 dw~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r-------------  462 (523)
                      +..+.       +. +.+||+|++..++|+..+...+++.+.+.|         +|||.+++.....             
T Consensus       180 d~e~l-------p~-~~~FD~V~s~~vl~H~~dp~~~L~~l~~~L---------kpGG~lvl~~~~i~~~~~~~l~p~~~  242 (322)
T PRK15068        180 GIEQL-------PA-LKAFDTVFSMGVLYHRRSPLDHLKQLKDQL---------VPGGELVLETLVIDGDENTVLVPGDR  242 (322)
T ss_pred             CHHHC-------CC-cCCcCEEEECChhhccCCHHHHHHHHHHhc---------CCCcEEEEEEEEecCCCccccCchhH
Confidence            44332       12 468999999999999999999999999999         6799998753210             


Q ss_pred             -----C----CChhHHHHHHHHcCCEEEEEcCCCCCCCCcchhhcccccCCCCcccc
Q 009871          463 -----Q----VDEPSMLSAATQCGFRLVDKWPSKNSASPSESIISSWFSENGHEVYL  510 (523)
Q Consensus       463 -----~----~~~~~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  510 (523)
                           +    .+...+...++++||+..++...+... ...+....|+..+++....
T Consensus       243 y~~~~~~~~lps~~~l~~~L~~aGF~~i~~~~~~~t~-~~eqr~t~w~~~~sl~~fl  298 (322)
T PRK15068        243 YAKMRNVYFIPSVPALKNWLERAGFKDVRIVDVSVTT-TEEQRKTEWMTTESLADFL  298 (322)
T ss_pred             HhcCccceeCCCHHHHHHHHHHcCCceEEEEeCCCCC-ccccccccCcccCcHhhcC
Confidence                 0    134567888999999999886654433 3345555677655544433

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=99.51  E-value=6.7e-13  Score=127.80  Aligned_cols=142  Identities=23%  Similarity=0.296  Sum_probs=108.4

Q ss_pred             CcccccchhHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCce
Q 009871          311 STGLMLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKL  390 (523)
Q Consensus       311 ~~G~~~W~~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v  390 (523)
                      ..|.-..+.+..+.+++....  .++.+|||+|||+|.++..+++.++.+|+++|+|+.+++.+++|+..|++.   ..+
T Consensus        97 afgtg~h~tt~~~l~~l~~~~--~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~---~~~  171 (250)
T PRK00517         97 AFGTGTHPTTRLCLEALEKLV--LPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVE---LNV  171 (250)
T ss_pred             ccCCCCCHHHHHHHHHHHhhc--CCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCC---ceE
Confidence            344555788888888887543  478899999999998887777777778999999999999999999998763   222


Q ss_pred             EEEeeecCCCCcchhhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhHHH
Q 009871          391 ITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSML  470 (523)
Q Consensus       391 ~~~~ldw~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~~  470 (523)
                      .+.     ..          ..+||+|+++   ...+.+..+++.+.++|         +|||.++++.... ...+.+.
T Consensus       172 ~~~-----~~----------~~~fD~Vvan---i~~~~~~~l~~~~~~~L---------kpgG~lilsgi~~-~~~~~v~  223 (250)
T PRK00517        172 YLP-----QG----------DLKADVIVAN---ILANPLLELAPDLARLL---------KPGGRLILSGILE-EQADEVL  223 (250)
T ss_pred             EEc-----cC----------CCCcCEEEEc---CcHHHHHHHHHHHHHhc---------CCCcEEEEEECcH-hhHHHHH
Confidence            221     10          1279999986   23345677888999999         7799999986653 3456788


Q ss_pred             HHHHHcCCEEEEEcC
Q 009871          471 SAATQCGFRLVDKWP  485 (523)
Q Consensus       471 ~~~~~~gf~~~~~~~  485 (523)
                      +.+++.||++.+...
T Consensus       224 ~~l~~~Gf~~~~~~~  238 (250)
T PRK00517        224 EAYEEAGFTLDEVLE  238 (250)
T ss_pred             HHHHHCCCEEEEEEE
Confidence            889999999988765

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=99.50  E-value=5e-13  Score=131.97  Aligned_cols=132  Identities=14%  Similarity=0.165  Sum_probs=101.7

Q ss_pred             CCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCC
Q 009871          334 VAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG  413 (523)
Q Consensus       334 ~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~  413 (523)
                      .++.+|||||||+|.++..++..+ .+|+++|.++++++.++.++..+...   .++.+...+-.   .+    +...++
T Consensus       130 ~~g~~ILDIGCG~G~~s~~La~~g-~~V~GID~s~~~i~~Ar~~~~~~~~~---~~i~~~~~dae---~l----~~~~~~  198 (322)
T PLN02396        130 FEGLKFIDIGCGGGLLSEPLARMG-ATVTGVDAVDKNVKIARLHADMDPVT---STIEYLCTTAE---KL----ADEGRK  198 (322)
T ss_pred             CCCCEEEEeeCCCCHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHhcCcc---cceeEEecCHH---Hh----hhccCC
Confidence            467899999999998887777664 58999999999999999887665432   24444433221   11    223568


Q ss_pred             ccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecC----------------------------CC
Q 009871          414 FEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ----------------------------VD  465 (523)
Q Consensus       414 fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~----------------------------~~  465 (523)
                      ||+|++.+++++..+...+++.+.++|         +|||.++++...+.                            .+
T Consensus       199 FD~Vi~~~vLeHv~d~~~~L~~l~r~L---------kPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~t  269 (322)
T PLN02396        199 FDAVLSLEVIEHVANPAEFCKSLSALT---------IPNGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVT  269 (322)
T ss_pred             CCEEEEhhHHHhcCCHHHHHHHHHHHc---------CCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCC
Confidence            999999999999999999999999999         78999998864321                            23


Q ss_pred             hhHHHHHHHHcCCEEEEEcC
Q 009871          466 EPSMLSAATQCGFRLVDKWP  485 (523)
Q Consensus       466 ~~~~~~~~~~~gf~~~~~~~  485 (523)
                      .+++...++++||++.++.-
T Consensus       270 p~eL~~lL~~aGf~i~~~~G  289 (322)
T PLN02396        270 PEELSMILQRASVDVKEMAG  289 (322)
T ss_pred             HHHHHHHHHHcCCeEEEEee
Confidence            46788888999999998833

>TIGR00452 methyltransferase, putative

Probab=99.50  E-value=1.2e-12  Score=128.71  Aligned_cols=173  Identities=17%  Similarity=0.201  Sum_probs=117.6

Q ss_pred             cchhHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEee
Q 009871          316 LWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRL  395 (523)
Q Consensus       316 ~W~~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l  395 (523)
                      -|.+......++.. ....++++|||+|||+|.++..++..++..|+++|.|+.|+..++.....-..   ..++.+..+
T Consensus       103 e~~s~~~~~~~l~~-l~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~---~~~v~~~~~  178 (314)
T TIGR00452       103 EWRSDIKWDRVLPH-LSPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDN---DKRAILEPL  178 (314)
T ss_pred             HHHHHHHHHHHHHh-cCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhcc---CCCeEEEEC
Confidence            46665555555543 34467899999999999888888888888999999999998765432221111   134445444


Q ss_pred             ecCCCCcchhhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee-------------c
Q 009871          396 EWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIF-------------R  462 (523)
Q Consensus       396 dw~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~-------------r  462 (523)
                      +..+.       + ...+||+|++..++|+..+....++.++++|         +|||.+++....             |
T Consensus       179 ~ie~l-------p-~~~~FD~V~s~gvL~H~~dp~~~L~el~r~L---------kpGG~Lvletl~i~g~~~~~l~p~~r  241 (314)
T TIGR00452       179 GIEQL-------H-ELYAFDTVFSMGVLYHRKSPLEHLKQLKHQL---------VIKGELVLETLVIDGDLNTVLVPKDR  241 (314)
T ss_pred             CHHHC-------C-CCCCcCEEEEcchhhccCCHHHHHHHHHHhc---------CCCCEEEEEEEEecCccccccCchHH
Confidence            33221       1 1248999999999999999999999999999         779999875321             0


Q ss_pred             ---------CCChhHHHHHHHHcCCEEEEEcCCCCCCCCcchhhcccccCCCCcccc
Q 009871          463 ---------QVDEPSMLSAATQCGFRLVDKWPSKNSASPSESIISSWFSENGHEVYL  510 (523)
Q Consensus       463 ---------~~~~~~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  510 (523)
                               ..+...+...++++||+..++......... ++....|+..+++....
T Consensus       242 y~k~~nv~flpS~~~L~~~L~~aGF~~V~i~~~~~tt~~-eqr~t~w~~~~sl~~~l  297 (314)
T TIGR00452       242 YAKMKNVYFIPSVSALKNWLEKVGFENFRILDVLKTTPE-EQRKTDWILGESLEDFL  297 (314)
T ss_pred             HHhccccccCCCHHHHHHHHHHCCCeEEEEEeccCCCHH-HhhhhhhhhccchHhhc
Confidence                     013345677889999999987654333322 44555587765554433

Known examples to date are restricted to the proteobacteria.

>PLN02244 tocopherol O-methyltransferase

Probab=99.49  E-value=2.4e-13  Score=136.67  Aligned_cols=121  Identities=18%  Similarity=0.202  Sum_probs=89.3

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC--CCcEEEEEeeccCCccCCCCCCCceeEEE
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISDDLSRQISPSSIDIVT  151 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~~~~~~~~~~fD~V~  151 (523)
                      .++.+|||||||+|.++..|++.+ +++|+|||+|+.|++.|+++....  ..+++++++|+.++    ++++++||+|+
T Consensus       117 ~~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~----~~~~~~FD~V~  191 (340)
T PLN02244        117 KRPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQ----PFEDGQFDLVW  191 (340)
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccC----CCCCCCccEEE
Confidence            467899999999999999999886 678999999999999999875432  35799999999877    77889999999


Q ss_pred             E-----------------ccccccceeeecceEE----ecCC-e-----------------EEEeeCHHHHHHHHHhCCC
Q 009871          152 M-----------------ERLTGKDQKISENFYV----RGDG-T-----------------RAFYFSNDFLTSLFKENGF  192 (523)
Q Consensus       152 ~-----------------~~~~~~~~~~~~~~~~----~~~g-~-----------------~~~~~~~~~l~~ll~~~Gf  192 (523)
                      +                 .+.+++++.+.-..+.    .+.. .                 +..+.+.+++.++++++||
T Consensus       192 s~~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~p~~~s~~~~~~~l~~aGf  271 (340)
T PLN02244        192 SMESGEHMPDKRKFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYYLPAWCSTSDYVKLAESLGL  271 (340)
T ss_pred             ECCchhccCCHHHHHHHHHHHcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHCCC
Confidence            9                 3444555543321110    0000 0                 0012378899999999999


Q ss_pred             cEEEEEe
Q 009871          193 DVEELGL  199 (523)
Q Consensus       193 ~~~~~~~  199 (523)
                      ..+++..
T Consensus       272 ~~v~~~d  278 (340)
T PLN02244        272 QDIKTED  278 (340)
T ss_pred             CeeEeee
Confidence            9877643

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=99.49  E-value=1e-12  Score=129.11  Aligned_cols=147  Identities=22%  Similarity=0.261  Sum_probs=108.5

Q ss_pred             CcccccchhHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCce
Q 009871          311 STGLMLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKL  390 (523)
Q Consensus       311 ~~G~~~W~~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v  390 (523)
                      ..|.-.++++.+..+++....  .++++|||+|||+|.++..+++.++.+|+++|+|+.+++.+++|+..|++.   ..+
T Consensus       137 aFgtG~h~tt~l~l~~l~~~~--~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~---~~~  211 (288)
T TIGR00406       137 AFGTGTHPTTSLCLEWLEDLD--LKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVS---DRL  211 (288)
T ss_pred             cccCCCCHHHHHHHHHHHhhc--CCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCC---cce
Confidence            344446677777777776543  367899999999998888877778789999999999999999999998875   233


Q ss_pred             EEEeeecCCCCcchhhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhHHH
Q 009871          391 ITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSML  470 (523)
Q Consensus       391 ~~~~ldw~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~~  470 (523)
                      .+...+   ..      ....++||+|+++-   ....+..++..+.++|         +|||.++++.... .....+.
T Consensus       212 ~~~~~~---~~------~~~~~~fDlVvan~---~~~~l~~ll~~~~~~L---------kpgG~li~sgi~~-~~~~~v~  269 (288)
T TIGR00406       212 QVKLIY---LE------QPIEGKADVIVANI---LAEVIKELYPQFSRLV---------KPGGWLILSGILE-TQAQSVC  269 (288)
T ss_pred             EEEecc---cc------cccCCCceEEEEec---CHHHHHHHHHHHHHHc---------CCCcEEEEEeCcH-hHHHHHH
Confidence            333221   10      12246899999973   2345678888999999         7799999987653 3445677


Q ss_pred             HHHHHcCCEEEEEcC
Q 009871          471 SAATQCGFRLVDKWP  485 (523)
Q Consensus       471 ~~~~~~gf~~~~~~~  485 (523)
                      +.+++. |++..+..
T Consensus       270 ~~~~~~-f~~~~~~~  283 (288)
T TIGR00406       270 DAYEQG-FTVVEIRQ  283 (288)
T ss_pred             HHHHcc-CceeeEec
Confidence            777776 98877654

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=99.46  E-value=1.4e-13  Score=126.14  Aligned_cols=108  Identities=17%  Similarity=0.255  Sum_probs=89.7

Q ss_pred             CCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCC
Q 009871          334 VAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG  413 (523)
Q Consensus       334 ~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~  413 (523)
                      .+|.+|||+|||-|.++..+|+.| ++|+++|+++.+|+.|+..+..+++..          +|... ..+++.. ..++
T Consensus        58 l~g~~vLDvGCGgG~Lse~mAr~G-a~VtgiD~se~~I~~Ak~ha~e~gv~i----------~y~~~-~~edl~~-~~~~  124 (243)
T COG2227          58 LPGLRVLDVGCGGGILSEPLARLG-ASVTGIDASEKPIEVAKLHALESGVNI----------DYRQA-TVEDLAS-AGGQ  124 (243)
T ss_pred             CCCCeEEEecCCccHhhHHHHHCC-CeeEEecCChHHHHHHHHhhhhccccc----------cchhh-hHHHHHh-cCCC
Confidence            589999999999998888888888 689999999999999999998877742          22221 1222211 2369


Q ss_pred             ccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecC
Q 009871          414 FEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ  463 (523)
Q Consensus       414 fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~  463 (523)
                      ||+|++.+|+.|..+...+++.+.+++         +|+|.++++...|.
T Consensus       125 FDvV~cmEVlEHv~dp~~~~~~c~~lv---------kP~G~lf~STinrt  165 (243)
T COG2227         125 FDVVTCMEVLEHVPDPESFLRACAKLV---------KPGGILFLSTINRT  165 (243)
T ss_pred             ccEEEEhhHHHccCCHHHHHHHHHHHc---------CCCcEEEEeccccC
Confidence            999999999999999999999999999         78999999998865

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=99.46  E-value=1.8e-12  Score=123.38  Aligned_cols=144  Identities=18%  Similarity=0.255  Sum_probs=116.5

Q ss_pred             hhHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeec
Q 009871          318 ESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEW  397 (523)
Q Consensus       318 ~~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw  397 (523)
                      ++...-.+.+++...+.+|.+|||||||.|+++..+|+....+|+++++|++..+.+++.+..-++.   .++++...||
T Consensus        55 eAQ~~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~---~~v~v~l~d~  131 (283)
T COG2230          55 EAQRAKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLE---DNVEVRLQDY  131 (283)
T ss_pred             HHHHHHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCC---cccEEEeccc
Confidence            4444556777788888999999999999999999999997789999999999999999999998876   6788888899


Q ss_pred             CCCCcchhhhhhcCCCccEEEEccccCC--CCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCC-----------
Q 009871          398 GNRDHIEAIKEENNEGFEVILGTDVSYI--PEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQV-----------  464 (523)
Q Consensus       398 ~~~~~~~~~~~~~~~~fD~Ii~~d~~y~--~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~-----------  464 (523)
                      .+.          .+.||-|++..++-+  .+..+.+++.+.++|         +|+|.+++-...+..           
T Consensus       132 rd~----------~e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L---------~~~G~~llh~I~~~~~~~~~~~~~i~  192 (283)
T COG2230         132 RDF----------EEPFDRIVSVGMFEHVGKENYDDFFKKVYALL---------KPGGRMLLHSITGPDQEFRRFPDFID  192 (283)
T ss_pred             ccc----------ccccceeeehhhHHHhCcccHHHHHHHHHhhc---------CCCceEEEEEecCCCcccccchHHHH
Confidence            875          346999999999877  456999999999999         678888765554322           


Q ss_pred             ----------ChhHHHHHHHHcCCEEEEE
Q 009871          465 ----------DEPSMLSAATQCGFRLVDK  483 (523)
Q Consensus       465 ----------~~~~~~~~~~~~gf~~~~~  483 (523)
                                +...+.+.+.+.||.+.+.
T Consensus       193 ~yiFPgG~lPs~~~i~~~~~~~~~~v~~~  221 (283)
T COG2230         193 KYIFPGGELPSISEILELASEAGFVVLDV  221 (283)
T ss_pred             HhCCCCCcCCCHHHHHHHHHhcCcEEehH
Confidence                      1234455567788887765

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=99.46  E-value=4.7e-13  Score=122.07  Aligned_cols=113  Identities=22%  Similarity=0.197  Sum_probs=87.9

Q ss_pred             CCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCC-CcEEEEEeeccCCccCCCCCCCceeEEEEc
Q 009871           75 GRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQISPSSIDIVTME  153 (523)
Q Consensus        75 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~  153 (523)
                      ++.+|||+|||+|..+..+++..++++|+|+|+|+.|++.|+++.+..+ .+++++++|+.+.    +. +++||+|++.
T Consensus        45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~----~~-~~~fDlV~~~  119 (187)
T PRK00107         45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEF----GQ-EEKFDVVTSR  119 (187)
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhC----CC-CCCccEEEEc
Confidence            4789999999999999999988888999999999999999998765432 4599999999875    33 6789999992


Q ss_pred             cc------cccceeeecceEEecCCeEEEee---CHHHHHHHHHhCCCcEEEE
Q 009871          154 RL------TGKDQKISENFYVRGDGTRAFYF---SNDFLTSLFKENGFDVEEL  197 (523)
Q Consensus       154 ~~------~~~~~~~~~~~~~~~~g~~~~~~---~~~~l~~ll~~~Gf~~~~~  197 (523)
                      .+      .....+     .++++|.+++..   ...++..+.+..|+.+.++
T Consensus       120 ~~~~~~~~l~~~~~-----~LkpGG~lv~~~~~~~~~~l~~~~~~~~~~~~~~  167 (187)
T PRK00107        120 AVASLSDLVELCLP-----LLKPGGRFLALKGRDPEEEIAELPKALGGKVEEV  167 (187)
T ss_pred             cccCHHHHHHHHHH-----hcCCCeEEEEEeCCChHHHHHHHHHhcCceEeee
Confidence            22      112222     678888877653   4567788888889986544

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=99.45  E-value=1e-12  Score=125.43  Aligned_cols=80  Identities=20%  Similarity=0.241  Sum_probs=66.6

Q ss_pred             hhhcCCCCCeEEEECCCccccHHHHHhhC-CCCEEEEEeCCHHHHHHHHhcccc-CCCcEEEEEeeccCCccCCCCCCCc
Q 009871           69 RYFSGAGRKDVLEVGCGAGNTIFPLIAAY-PDVFVYACDFSPRAVNLVMTHKDF-TETRVSTFVCDLISDDLSRQISPSS  146 (523)
Q Consensus        69 ~~~~~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~v~gvD~S~~~l~~a~~~~~~-~~~~v~~~~~d~~~~~~~~~~~~~~  146 (523)
                      ..+...++.+|||+|||+|..+..+++.. ++.+|+|+|+|+.|++.|+++... ...+++++++|+...    ++++++
T Consensus        39 ~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~----~~~~~~  114 (231)
T TIGR02752        39 KRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMEL----PFDDNS  114 (231)
T ss_pred             HhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcC----CCCCCC
Confidence            34455678899999999999999999884 677999999999999999987532 235789999999876    566789


Q ss_pred             eeEEEE
Q 009871          147 IDIVTM  152 (523)
Q Consensus       147 fD~V~~  152 (523)
                      ||+|++
T Consensus       115 fD~V~~  120 (231)
T TIGR02752       115 FDYVTI  120 (231)
T ss_pred             ccEEEE
Confidence            999998

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=99.45  E-value=6.6e-13  Score=128.64  Aligned_cols=124  Identities=13%  Similarity=0.147  Sum_probs=89.1

Q ss_pred             hhhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCcee
Q 009871           69 RYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSID  148 (523)
Q Consensus        69 ~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD  148 (523)
                      ..+...++.+|||||||+|..+..+++.+ +++|+|+|+|+.|++.|+++... ..++.+.++|+...    ++++++||
T Consensus        46 ~~l~l~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~-~~~i~~~~~D~~~~----~~~~~~FD  119 (263)
T PTZ00098         46 SDIELNENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSD-KNKIEFEANDILKK----DFPENTFD  119 (263)
T ss_pred             HhCCCCCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCc-CCceEEEECCcccC----CCCCCCeE
Confidence            33455678899999999999999988765 67899999999999999987643 35799999999876    67789999


Q ss_pred             EEEE-------------------ccccccceeeecceEEecCC-------------eEEEeeCHHHHHHHHHhCCCcEEE
Q 009871          149 IVTM-------------------ERLTGKDQKISENFYVRGDG-------------TRAFYFSNDFLTSLFKENGFDVEE  196 (523)
Q Consensus       149 ~V~~-------------------~~~~~~~~~~~~~~~~~~~g-------------~~~~~~~~~~l~~ll~~~Gf~~~~  196 (523)
                      +|++                   .+.+++++.+.-..+...+.             ....+.+.+++.++|+++||+.+.
T Consensus       120 ~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~  199 (263)
T PTZ00098        120 MIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIENWDEEFKAYIKKRKYTLIPIQEYGDLIKSCNFQNVV  199 (263)
T ss_pred             EEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccCcHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCCeee
Confidence            9999                   12234444332111111000             001123778999999999999876


Q ss_pred             EE
Q 009871          197 LG  198 (523)
Q Consensus       197 ~~  198 (523)
                      ..
T Consensus       200 ~~  201 (263)
T PTZ00098        200 AK  201 (263)
T ss_pred             EE
Confidence            64

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=99.44  E-value=2.1e-12  Score=124.94  Aligned_cols=146  Identities=16%  Similarity=0.227  Sum_probs=107.7

Q ss_pred             hhHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeec
Q 009871          318 ESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEW  397 (523)
Q Consensus       318 ~~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw  397 (523)
                      +|-....+.+.+...+.+|.+|||||||.|+++..++.+...+|+++.+|++..+.+++.+...++.   .++.+...||
T Consensus        45 ~AQ~~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~---~~v~v~~~D~  121 (273)
T PF02353_consen   45 EAQERKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGLE---DRVEVRLQDY  121 (273)
T ss_dssp             HHHHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSS---STEEEEES-G
T ss_pred             HHHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCC---CceEEEEeec
Confidence            4555667888888888999999999999999999999985568999999999999999999988775   5777777777


Q ss_pred             CCCCcchhhhhhcCCCccEEEEccccCCC--CChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecC------------
Q 009871          398 GNRDHIEAIKEENNEGFEVILGTDVSYIP--EAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ------------  463 (523)
Q Consensus       398 ~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~--~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~------------  463 (523)
                      .+.          +.+||.|++.+++.+.  +.++.+++.+.++|         +|||.+++....+.            
T Consensus       122 ~~~----------~~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~L---------kpgG~~~lq~i~~~~~~~~~~~~~~~  182 (273)
T PF02353_consen  122 RDL----------PGKFDRIVSIEMFEHVGRKNYPAFFRKISRLL---------KPGGRLVLQTITHRDPPYHAERRSSS  182 (273)
T ss_dssp             GG-------------S-SEEEEESEGGGTCGGGHHHHHHHHHHHS---------ETTEEEEEEEEEE--HHHHHCTTCCC
T ss_pred             ccc----------CCCCCEEEEEechhhcChhHHHHHHHHHHHhc---------CCCcEEEEEecccccccchhhcCCCc
Confidence            543          2399999999998885  67899999999999         77999987544321            


Q ss_pred             -------------CChhHHHHHHHHcCCEEEEEcC
Q 009871          464 -------------VDEPSMLSAATQCGFRLVDKWP  485 (523)
Q Consensus       464 -------------~~~~~~~~~~~~~gf~~~~~~~  485 (523)
                                   ++...+...+++.||++..+..
T Consensus       183 ~~i~kyiFPgg~lps~~~~~~~~~~~~l~v~~~~~  217 (273)
T PF02353_consen  183 DFIRKYIFPGGYLPSLSEILRAAEDAGLEVEDVEN  217 (273)
T ss_dssp             HHHHHHTSTTS---BHHHHHHHHHHTT-EEEEEEE
T ss_pred             eEEEEeeCCCCCCCCHHHHHHHHhcCCEEEEEEEE
Confidence                         1223455667788999887754

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.44  E-value=6.2e-13  Score=111.56  Aligned_cols=106  Identities=15%  Similarity=0.227  Sum_probs=82.2

Q ss_pred             CCCeEEEECCCccHHHHHHHhc-CCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCC
Q 009871          335 AGKKVLELGCGCGGICSMVAAG-SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG  413 (523)
Q Consensus       335 ~~~~VLElG~G~G~l~~~~a~~-~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~  413 (523)
                      |+.+|||||||+|.++..+++. ...+|+++|+|+.+++.+++|+..+...   .++.+...|+ .. ..     ....+
T Consensus         1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~---~~i~~~~~d~-~~-~~-----~~~~~   70 (112)
T PF12847_consen    1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLS---DRITFVQGDA-EF-DP-----DFLEP   70 (112)
T ss_dssp             TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTT---TTEEEEESCC-HG-GT-----TTSSC
T ss_pred             CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCC---CCeEEEECcc-cc-Cc-----ccCCC
Confidence            5789999999999888888883 5678999999999999999999666554   6788887777 11 11     12357


Q ss_pred             ccEEEEcc-ccCC---CCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEE
Q 009871          414 FEVILGTD-VSYI---PEAILPLFATAKELTASSNKSLREDQQPAFILCH  459 (523)
Q Consensus       414 fD~Ii~~d-~~y~---~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~  459 (523)
                      ||+|++.. +...   .+....+++.+.++|         +|||.+++..
T Consensus        71 ~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L---------~pgG~lvi~~  111 (112)
T PF12847_consen   71 FDLVICSGFTLHFLLPLDERRRVLERIRRLL---------KPGGRLVINT  111 (112)
T ss_dssp             EEEEEECSGSGGGCCHHHHHHHHHHHHHHHE---------EEEEEEEEEE
T ss_pred             CCEEEECCCccccccchhHHHHHHHHHHHhc---------CCCcEEEEEE
Confidence            99999988 3321   135677899999999         6799999864

...

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=99.44  E-value=1.3e-13  Score=126.95  Aligned_cols=166  Identities=22%  Similarity=0.271  Sum_probs=104.8

Q ss_pred             cCCCCCCCChHHHHHHHHHhhHHHHH------HHHhcccccccchhhhHHHHhhhhcC---CCCCeEEEECCCccccHHH
Q 009871           22 YPTPNTGVSPFWRDKYEREAKKYWDL------FYKRHQDRFFKDRHYLDKEWGRYFSG---AGRKDVLEVGCGAGNTIFP   92 (523)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~Wd~------~y~~~~~~f~~~~~~l~~~~~~~~~~---~~~~~iLDiGcG~G~~~~~   92 (523)
                      ...++..++..+-.+|...+.+|||.      +.+.+..+...-++.+....+...+.   ..+.+|||+|||+|.++.+
T Consensus        27 s~~s~~si~~~eV~~f~~la~~wwd~~g~~~~Lh~mn~~Rl~fi~d~~~~~v~~~~p~~k~~~g~~ilDvGCGgGLLSep  106 (282)
T KOG1270|consen   27 SQASTTSIDVDEVKKFQALAFTWWDEEGVRHPLHSMNQTRLPFIRDDLRNRVNNHAPGSKPLLGMKILDVGCGGGLLSEP  106 (282)
T ss_pred             cccceecccHHHHHHHHHhcccccccccchhhhhhccchhhhHHHHHHHhcccccCCCccccCCceEEEeccCccccchh
Confidence            33444456666678899999999995      22223233322222222222111111   1257899999999999999


Q ss_pred             HHhhCCCCEEEEEeCCHHHHHHHHhccccCC---C----cEEEEEeeccCCccCCCCCCCceeEEEE-------------
Q 009871           93 LIAAYPDVFVYACDFSPRAVNLVMTHKDFTE---T----RVSTFVCDLISDDLSRQISPSSIDIVTM-------------  152 (523)
Q Consensus        93 l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~---~----~v~~~~~d~~~~~~~~~~~~~~fD~V~~-------------  152 (523)
                      |++.  +++|+|||+|++||+.|+++....+   .    ++++.+.|++..       .+.||+|+|             
T Consensus       107 LArl--ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~-------~~~fDaVvcsevleHV~dp~~~  177 (282)
T KOG1270|consen  107 LARL--GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGL-------TGKFDAVVCSEVLEHVKDPQEF  177 (282)
T ss_pred             hHhh--CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhc-------ccccceeeeHHHHHHHhCHHHH
Confidence            9999  5679999999999999999854332   2    467777787755       345999999             


Q ss_pred             ----ccccccceeeecc-------------------eEEecCCeEEE--eeCHHHHHHHHHhCCCcEEE
Q 009871          153 ----ERLTGKDQKISEN-------------------FYVRGDGTRAF--YFSNDFLTSLFKENGFDVEE  196 (523)
Q Consensus       153 ----~~~~~~~~~~~~~-------------------~~~~~~g~~~~--~~~~~~l~~ll~~~Gf~~~~  196 (523)
                          ...+++++++--.                   .-+-|.|++.+  |.+++++.+++..+++++..
T Consensus       178 l~~l~~~lkP~G~lfittinrt~lS~~~~i~~~E~vl~ivp~Gth~~ekfi~p~e~~~~l~~~~~~v~~  246 (282)
T KOG1270|consen  178 LNCLSALLKPNGRLFITTINRTILSFAGTIFLAEIVLRIVPKGTHTWEKFINPEELTSILNANGAQVND  246 (282)
T ss_pred             HHHHHHHhCCCCceEeeehhhhHHHhhccccHHHHHHHhcCCCCcCHHHcCCHHHHHHHHHhcCcchhh
Confidence                1222333322110                   00123344332  56899999999998887643

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.44  E-value=2.5e-12  Score=124.39  Aligned_cols=130  Identities=15%  Similarity=0.097  Sum_probs=100.3

Q ss_pred             CCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCc
Q 009871          335 AGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGF  414 (523)
Q Consensus       335 ~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~f  414 (523)
                      ++.+|||+|||+|.++..++..+ .+|+++|+|++|++.|++++..+++.   .++.+...+..+      +.+..+++|
T Consensus        44 ~~~~vLDiGcG~G~~a~~la~~g-~~v~~vD~s~~~l~~a~~~~~~~g~~---~~v~~~~~d~~~------l~~~~~~~f  113 (255)
T PRK11036         44 RPLRVLDAGGGEGQTAIKLAELG-HQVILCDLSAEMIQRAKQAAEAKGVS---DNMQFIHCAAQD------IAQHLETPV  113 (255)
T ss_pred             CCCEEEEeCCCchHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHhcCCc---cceEEEEcCHHH------HhhhcCCCC
Confidence            56799999999998888888875 57999999999999999999887654   345554443322      112335689


Q ss_pred             cEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec--------------------------------
Q 009871          415 EVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFR--------------------------------  462 (523)
Q Consensus       415 D~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r--------------------------------  462 (523)
                      |+|++..++++......+++.+.++|         +|||.++++....                                
T Consensus       114 D~V~~~~vl~~~~~~~~~l~~~~~~L---------kpgG~l~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  184 (255)
T PRK11036        114 DLILFHAVLEWVADPKSVLQTLWSVL---------RPGGALSLMFYNANGLLMHNMVAGNFDYVQAGMPKRKKRTLSPDY  184 (255)
T ss_pred             CEEEehhHHHhhCCHHHHHHHHHHHc---------CCCeEEEEEEECccHHHHHHHHccChHHHHhcCccccccCCCCCC
Confidence            99999999999888999999999999         7799998764321                                


Q ss_pred             CCChhHHHHHHHHcCCEEEEE
Q 009871          463 QVDEPSMLSAATQCGFRLVDK  483 (523)
Q Consensus       463 ~~~~~~~~~~~~~~gf~~~~~  483 (523)
                      ..+.+++.+.+++.||++...
T Consensus       185 ~~~~~~l~~~l~~aGf~~~~~  205 (255)
T PRK11036        185 PLDPEQVYQWLEEAGWQIMGK  205 (255)
T ss_pred             CCCHHHHHHHHHHCCCeEeee
Confidence            122356777888999998754

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=99.43  E-value=2.7e-12  Score=124.32  Aligned_cols=140  Identities=14%  Similarity=0.172  Sum_probs=103.0

Q ss_pred             HHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcc
Q 009871          324 AAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHI  403 (523)
Q Consensus       324 a~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~  403 (523)
                      +..+.....+.++.+|||||||+|..+..++.....+|+++|+++.+++.++++...      ..++.+...|..+.   
T Consensus        41 ~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~------~~~i~~~~~D~~~~---  111 (263)
T PTZ00098         41 TTKILSDIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD------KNKIEFEANDILKK---  111 (263)
T ss_pred             HHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc------CCceEEEECCcccC---
Confidence            334444445568889999999999888777766556899999999999999987543      13566665554422   


Q ss_pred             hhhhhhcCCCccEEEEccccCCCC--ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecC------------------
Q 009871          404 EAIKEENNEGFEVILGTDVSYIPE--AILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ------------------  463 (523)
Q Consensus       404 ~~~~~~~~~~fD~Ii~~d~~y~~~--~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~------------------  463 (523)
                          ++++++||+|++.+++++..  ....+++.+.++|         +|||.+++......                  
T Consensus       112 ----~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~L---------kPGG~lvi~d~~~~~~~~~~~~~~~~~~~~~~  178 (263)
T PTZ00098        112 ----DFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWL---------KPNGILLITDYCADKIENWDEEFKAYIKKRKY  178 (263)
T ss_pred             ----CCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHc---------CCCcEEEEEEeccccccCcHHHHHHHHHhcCC
Confidence                23457899999999887653  7899999999999         78999998764221                  


Q ss_pred             --CChhHHHHHHHHcCCEEEEEcC
Q 009871          464 --VDEPSMLSAATQCGFRLVDKWP  485 (523)
Q Consensus       464 --~~~~~~~~~~~~~gf~~~~~~~  485 (523)
                        .+...+.+.++++||+......
T Consensus       179 ~~~~~~~~~~~l~~aGF~~v~~~d  202 (263)
T PTZ00098        179 TLIPIQEYGDLIKSCNFQNVVAKD  202 (263)
T ss_pred             CCCCHHHHHHHHHHCCCCeeeEEe
Confidence              1224566778889999877654

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=99.41  E-value=8.7e-12  Score=120.68  Aligned_cols=112  Identities=14%  Similarity=0.085  Sum_probs=84.2

Q ss_pred             CCCCCeEEEECCCccHHHHHHHhc-CC-CEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhc
Q 009871          333 IVAGKKVLELGCGCGGICSMVAAG-SA-DLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEEN  410 (523)
Q Consensus       333 ~~~~~~VLElG~G~G~l~~~~a~~-~~-~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~  410 (523)
                      ..++.+|||+|||+|.++..++.. ++ .+|+++|+|++|++.|+++....... ...++.+...|..+.       +++
T Consensus        71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~-~~~~i~~~~~d~~~l-------p~~  142 (261)
T PLN02233         71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKS-CYKNIEWIEGDATDL-------PFD  142 (261)
T ss_pred             CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhc-cCCCeEEEEcccccC-------CCC
Confidence            346789999999999888777775 33 58999999999999998765421110 113455555443321       345


Q ss_pred             CCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee
Q 009871          411 NEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIF  461 (523)
Q Consensus       411 ~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~  461 (523)
                      +++||+|+++.++.+..+...+++.+.++|         +|||.+++....
T Consensus       143 ~~sfD~V~~~~~l~~~~d~~~~l~ei~rvL---------kpGG~l~i~d~~  184 (261)
T PLN02233        143 DCYFDAITMGYGLRNVVDRLKAMQEMYRVL---------KPGSRVSILDFN  184 (261)
T ss_pred             CCCEeEEEEecccccCCCHHHHHHHHHHHc---------CcCcEEEEEECC
Confidence            678999999999999889999999999999         779998877543

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=99.41  E-value=4.2e-12  Score=116.23  Aligned_cols=80  Identities=19%  Similarity=0.211  Sum_probs=69.2

Q ss_pred             hhhcCCCCCeEEEECCCccccHHHHHhhCCC------CEEEEEeCCHHHHHHHHhcccc----CCCcEEEEEeeccCCcc
Q 009871           69 RYFSGAGRKDVLEVGCGAGNTIFPLIAAYPD------VFVYACDFSPRAVNLVMTHKDF----TETRVSTFVCDLISDDL  138 (523)
Q Consensus        69 ~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~------~~v~gvD~S~~~l~~a~~~~~~----~~~~v~~~~~d~~~~~~  138 (523)
                      ..+.+..+.++||++||||.+++.+.++.+.      .+|+.+|+||.|++.+++++..    ....+.|+++|++++  
T Consensus        94 ~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~L--  171 (296)
T KOG1540|consen   94 SKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDL--  171 (296)
T ss_pred             hccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccC--
Confidence            3455577899999999999999999998655      7899999999999999998732    234699999999999  


Q ss_pred             CCCCCCCceeEEEE
Q 009871          139 SRQISPSSIDIVTM  152 (523)
Q Consensus       139 ~~~~~~~~fD~V~~  152 (523)
                        ||++++||..++
T Consensus       172 --pFdd~s~D~yTi  183 (296)
T KOG1540|consen  172 --PFDDDSFDAYTI  183 (296)
T ss_pred             --CCCCCcceeEEE
Confidence              899999999998

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=99.40  E-value=7.5e-12  Score=114.16  Aligned_cols=124  Identities=15%  Similarity=0.102  Sum_probs=96.7

Q ss_pred             CCCeEEEECCCccHHHHHHHhc-CCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCC
Q 009871          335 AGKKVLELGCGCGGICSMVAAG-SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG  413 (523)
Q Consensus       335 ~~~~VLElG~G~G~l~~~~a~~-~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~  413 (523)
                      ++.+|||+|||+|.++..++.. ...+|+++|.++.|++.+++|++.++..    .+.+...+..+.       .. .++
T Consensus        45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~----~i~~~~~d~~~~-------~~-~~~  112 (187)
T PRK00107         45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLK----NVTVVHGRAEEF-------GQ-EEK  112 (187)
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCC----CEEEEeccHhhC-------CC-CCC
Confidence            4789999999999888877764 4568999999999999999999998764    266665554332       11 458


Q ss_pred             ccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhHHHHHHHHcCCEEEEEcC
Q 009871          414 FEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLVDKWP  485 (523)
Q Consensus       414 fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~~~~~~~~gf~~~~~~~  485 (523)
                      ||+|++..    ...++.+++.+.++|         +|||.+++....  .....+.+..+..|+.+..+..
T Consensus       113 fDlV~~~~----~~~~~~~l~~~~~~L---------kpGG~lv~~~~~--~~~~~l~~~~~~~~~~~~~~~~  169 (187)
T PRK00107        113 FDVVTSRA----VASLSDLVELCLPLL---------KPGGRFLALKGR--DPEEEIAELPKALGGKVEEVIE  169 (187)
T ss_pred             ccEEEEcc----ccCHHHHHHHHHHhc---------CCCeEEEEEeCC--ChHHHHHHHHHhcCceEeeeEE
Confidence            99999874    246789999999999         779999988644  2344677788889999887754

>PRK14967 putative methyltransferase; Provisional

Probab=99.40  E-value=1.8e-11  Score=115.97  Aligned_cols=149  Identities=19%  Similarity=0.186  Sum_probs=106.4

Q ss_pred             hHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecC
Q 009871          319 SAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWG  398 (523)
Q Consensus       319 ~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~  398 (523)
                      .+.++++++... ...++.+|||+|||+|.++..++..+..+|+++|+++.+++.+++|+..++.     .+.+...|+.
T Consensus        21 ds~~l~~~l~~~-~~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~-----~~~~~~~d~~   94 (223)
T PRK14967         21 DTQLLADALAAE-GLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGV-----DVDVRRGDWA   94 (223)
T ss_pred             cHHHHHHHHHhc-ccCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCC-----eeEEEECchh
Confidence            456677777543 2346789999999999888888777666999999999999999999988764     2445544543


Q ss_pred             CCCcchhhhhhcCCCccEEEEccccCCCC---------------------ChHHHHHHHHHHhhccCCCCCCCCCcEEEE
Q 009871          399 NRDHIEAIKEENNEGFEVILGTDVSYIPE---------------------AILPLFATAKELTASSNKSLREDQQPAFIL  457 (523)
Q Consensus       399 ~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~---------------------~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l  457 (523)
                      +.        +...+||+|+++...+...                     .+..+++.+.++|         ++||.+++
T Consensus        95 ~~--------~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~L---------k~gG~l~~  157 (223)
T PRK14967         95 RA--------VEFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALL---------APGGSLLL  157 (223)
T ss_pred             hh--------ccCCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhc---------CCCcEEEE
Confidence            21        2346899999975432211                     1456778888899         67999988


Q ss_pred             EEeecCCChhHHHHHHHHcCCEEEEEcCCCCCCC
Q 009871          458 CHIFRQVDEPSMLSAATQCGFRLVDKWPSKNSAS  491 (523)
Q Consensus       458 ~~~~r~~~~~~~~~~~~~~gf~~~~~~~~~~~~~  491 (523)
                      +.... .....+++.+++.||.+........+..
T Consensus       158 ~~~~~-~~~~~~~~~l~~~g~~~~~~~~~~~~~~  190 (223)
T PRK14967        158 VQSEL-SGVERTLTRLSEAGLDAEVVASQWIPFG  190 (223)
T ss_pred             EEecc-cCHHHHHHHHHHCCCCeEEEEeeccCcc
Confidence            76543 2345788888999998877655444443

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=99.40  E-value=8.3e-12  Score=115.69  Aligned_cols=102  Identities=25%  Similarity=0.257  Sum_probs=80.5

Q ss_pred             CCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCC
Q 009871          334 VAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG  413 (523)
Q Consensus       334 ~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~  413 (523)
                      .++.+|||+|||+|..+..+++.+ .+|+++|+|+.|++.+++++..+++.    .+.+...|+.+.       ++ +++
T Consensus        29 ~~~~~vLDiGcG~G~~a~~La~~g-~~V~gvD~S~~~i~~a~~~~~~~~~~----~v~~~~~d~~~~-------~~-~~~   95 (197)
T PRK11207         29 VKPGKTLDLGCGNGRNSLYLAANG-FDVTAWDKNPMSIANLERIKAAENLD----NLHTAVVDLNNL-------TF-DGE   95 (197)
T ss_pred             CCCCcEEEECCCCCHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHHcCCC----cceEEecChhhC-------Cc-CCC
Confidence            466899999999998888888875 48999999999999999998887653    355555554332       12 357


Q ss_pred             ccEEEEccccCCC--CChHHHHHHHHHHhhccCCCCCCCCCcEEEE
Q 009871          414 FEVILGTDVSYIP--EAILPLFATAKELTASSNKSLREDQQPAFIL  457 (523)
Q Consensus       414 fD~Ii~~d~~y~~--~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l  457 (523)
                      ||+|+++.++++.  +....+++.+.++|         +|||.+++
T Consensus        96 fD~I~~~~~~~~~~~~~~~~~l~~i~~~L---------kpgG~~~~  132 (197)
T PRK11207         96 YDFILSTVVLMFLEAKTIPGLIANMQRCT---------KPGGYNLI  132 (197)
T ss_pred             cCEEEEecchhhCCHHHHHHHHHHHHHHc---------CCCcEEEE
Confidence            9999999988753  36789999999999         77998654

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=99.39  E-value=1.9e-12  Score=125.25  Aligned_cols=72  Identities=24%  Similarity=0.342  Sum_probs=61.6

Q ss_pred             hhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeE
Q 009871           70 YFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDI  149 (523)
Q Consensus        70 ~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~  149 (523)
                      .+...++.+|||||||+|.++..+++++|+.+|+|+|+|+.|++.|+++      +++++++|+.++    + ++++||+
T Consensus        24 ~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~------~~~~~~~d~~~~----~-~~~~fD~   92 (255)
T PRK14103         24 RVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER------GVDARTGDVRDW----K-PKPDTDV   92 (255)
T ss_pred             hCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc------CCcEEEcChhhC----C-CCCCceE
Confidence            3444677899999999999999999998888999999999999999874      478899999754    2 4578999


Q ss_pred             EEE
Q 009871          150 VTM  152 (523)
Q Consensus       150 V~~  152 (523)
                      |++
T Consensus        93 v~~   95 (255)
T PRK14103         93 VVS   95 (255)
T ss_pred             EEE
Confidence            999

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=99.39  E-value=1.5e-12  Score=121.60  Aligned_cols=149  Identities=14%  Similarity=0.211  Sum_probs=108.6

Q ss_pred             hcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC--CCcEEEEEeeccCCccCCCCCCCcee
Q 009871           71 FSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISDDLSRQISPSSID  148 (523)
Q Consensus        71 ~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~~~~~~~~~~fD  148 (523)
                      .+....++|||+|||+|..++.++++.+.++|+|||+++.|.+.|+++.+.+  ..+++++++|+.+..  ......+||
T Consensus        40 ~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~--~~~~~~~fD  117 (248)
T COG4123          40 APVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFL--KALVFASFD  117 (248)
T ss_pred             cccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhh--hcccccccC
Confidence            3445589999999999999999999977799999999999999999987654  478999999998642  234455899


Q ss_pred             EEEE-ccccccceee-----------------ec-----ceEEecCCeEEEeeCHHHH---HHHHHhCCCcEEEEEeEee
Q 009871          149 IVTM-ERLTGKDQKI-----------------SE-----NFYVRGDGTRAFYFSNDFL---TSLFKENGFDVEELGLCCK  202 (523)
Q Consensus       149 ~V~~-~~~~~~~~~~-----------------~~-----~~~~~~~g~~~~~~~~~~l---~~ll~~~Gf~~~~~~~~~~  202 (523)
                      +|+| ..+...+...                 .+     .-.++++|++.+.+.++.+   ..++.+.+|...++..++ 
T Consensus       118 ~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~erl~ei~~~l~~~~~~~k~i~~V~-  196 (248)
T COG4123         118 LIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPERLAEIIELLKSYNLEPKRIQFVY-  196 (248)
T ss_pred             EEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHHHHHHHHHHHHhcCCCceEEEEec-
Confidence            9999 1221111110                 00     1357899999988877655   777788888887765544 


Q ss_pred             eeeecccCccceeEEEEEEEEecC
Q 009871          203 QVENRARELVMNRRWVQAVFCSSG  226 (523)
Q Consensus       203 ~~~~~~~~~~~~r~~~~~~~~~~~  226 (523)
                          .+.++.-+++.+.+......
T Consensus       197 ----p~~~k~A~~vLv~~~k~~~~  216 (248)
T COG4123         197 ----PKIGKAANRVLVEAIKGGKS  216 (248)
T ss_pred             ----CCCCCcceEEEEEEecCCCC
Confidence                45555556777776655553

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=99.39  E-value=2.2e-11  Score=118.36  Aligned_cols=171  Identities=18%  Similarity=0.199  Sum_probs=112.4

Q ss_pred             CCCCCCceEEEEEEcCceEEEEEecccccccCCCcccccchhHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcC
Q 009871          278 LSSFEDNEMIEVNLRDRSFKIEVLSKEYQHTCRSTGLMLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGS  357 (523)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~G~~~W~~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~  357 (523)
                      ...+..+-.....+.|..+.+.          ..+=.+-+++..++-..+.......+  +|||||||||.+++.++..+
T Consensus        65 ~~~P~~yi~g~~~f~gl~~~v~----------~~vliPr~dTe~Lve~~l~~~~~~~~--~ilDlGTGSG~iai~la~~~  132 (280)
T COG2890          65 EGEPVAYILGSAEFGGLRFKVD----------EGVLIPRPDTELLVEAALALLLQLDK--RILDLGTGSGAIAIALAKEG  132 (280)
T ss_pred             CCCCHhHhhccCeecceeeeeC----------CCceecCCchHHHHHHHHHhhhhcCC--cEEEecCChHHHHHHHHhhC
Confidence            3334444455567777666665          23335566666665554422221111  89999999999999998887


Q ss_pred             CC-EEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCccEEEEccccCCCC---------
Q 009871          358 AD-LVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPE---------  427 (523)
Q Consensus       358 ~~-~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~---------  427 (523)
                      +. +|++||+|+.+++.|++|+..|++    .++.+...||...        + .++||+||+|...-..+         
T Consensus       133 ~~~~V~a~Dis~~Al~~A~~Na~~~~l----~~~~~~~~dlf~~--------~-~~~fDlIVsNPPYip~~~~~~~~~~~  199 (280)
T COG2890         133 PDAEVIAVDISPDALALARENAERNGL----VRVLVVQSDLFEP--------L-RGKFDLIVSNPPYIPAEDPELLPEVV  199 (280)
T ss_pred             cCCeEEEEECCHHHHHHHHHHHHHcCC----ccEEEEeeecccc--------c-CCceeEEEeCCCCCCCcccccChhhh
Confidence            64 999999999999999999999987    2344444477654        1 34899999985432221         


Q ss_pred             ----------------ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhHHHHHHHHcC-CEEEEEc
Q 009871          428 ----------------AILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCG-FRLVDKW  484 (523)
Q Consensus       428 ----------------~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~~~~~~~~g-f~~~~~~  484 (523)
                                      .+..++..+...|         +++|.+++-...  ...+.+.+.+.+.| |......
T Consensus       200 ~~EP~~Al~~g~dGl~~~~~i~~~a~~~l---------~~~g~l~le~g~--~q~~~v~~~~~~~~~~~~v~~~  262 (280)
T COG2890         200 RYEPLLALVGGGDGLEVYRRILGEAPDIL---------KPGGVLILEIGL--TQGEAVKALFEDTGFFEIVETL  262 (280)
T ss_pred             ccCHHHHHccCccHHHHHHHHHHhhHHHc---------CCCcEEEEEECC--CcHHHHHHHHHhcCCceEEEEE
Confidence                            2445555566666         567777775532  34556888888999 5544443

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=99.39  E-value=3e-11  Score=111.23  Aligned_cols=127  Identities=17%  Similarity=0.116  Sum_probs=94.6

Q ss_pred             CCCCCCeEEEECCCccHHHHHHHhcCC-CEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhc
Q 009871          332 TIVAGKKVLELGCGCGGICSMVAAGSA-DLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEEN  410 (523)
Q Consensus       332 ~~~~~~~VLElG~G~G~l~~~~a~~~~-~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~  410 (523)
                      ...++.+|||+|||+|.++..+++.++ .+|+++|+++.+++.+++|+..++..    ++.+...+...        .+ 
T Consensus        28 ~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~----~i~~~~~d~~~--------~~-   94 (187)
T PRK08287         28 ELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCG----NIDIIPGEAPI--------EL-   94 (187)
T ss_pred             CCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCC----CeEEEecCchh--------hc-
Confidence            344778999999999988888887753 58999999999999999999987653    35544333210        11 


Q ss_pred             CCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhHHHHHHHHcCCEEEEEc
Q 009871          411 NEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLVDKW  484 (523)
Q Consensus       411 ~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~~~~~~~~gf~~~~~~  484 (523)
                      ..+||+|++...   ...+..+++.+.++|         +|+|.+++.... ......+.+.+++.||+..++.
T Consensus        95 ~~~~D~v~~~~~---~~~~~~~l~~~~~~L---------k~gG~lv~~~~~-~~~~~~~~~~l~~~g~~~~~~~  155 (187)
T PRK08287         95 PGKADAIFIGGS---GGNLTAIIDWSLAHL---------HPGGRLVLTFIL-LENLHSALAHLEKCGVSELDCV  155 (187)
T ss_pred             CcCCCEEEECCC---ccCHHHHHHHHHHhc---------CCCeEEEEEEec-HhhHHHHHHHHHHCCCCcceEE
Confidence            358999998643   345788899999999         679999886543 3345678888999999765543

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=99.38  E-value=2.2e-12  Score=121.96  Aligned_cols=158  Identities=23%  Similarity=0.311  Sum_probs=100.9

Q ss_pred             HHHHHHHhhHHHHHHHHhcc--ccc----ccchhhhHHHHhhhhc--CCCCCeEEEECCCccccHHHHHhhCCCCEEEEE
Q 009871           34 RDKYEREAKKYWDLFYKRHQ--DRF----FKDRHYLDKEWGRYFS--GAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYAC  105 (523)
Q Consensus        34 ~~~~~~~~~~~Wd~~y~~~~--~~f----~~~~~~l~~~~~~~~~--~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gv  105 (523)
                      +..|+.....-|+..|..+.  +.+    ......+...+.++++  ..++.+|||+|||+|.++..+++.  +.+|+|+
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~v~gv   83 (219)
T TIGR02021         6 RHYFDGTAFQRWARIYGSGDPVSRVRQTVREGRAAMRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKR--GAIVKAV   83 (219)
T ss_pred             HHHhCchhHHHHHHhhCCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHC--CCEEEEE
Confidence            34455555667887776421  110    0111222233333343  346789999999999999999887  5579999


Q ss_pred             eCCHHHHHHHHhccccCC--CcEEEEEeeccCCccCCCCCCCceeEEEE-------------------ccccccceeeec
Q 009871          106 DFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQISPSSIDIVTM-------------------ERLTGKDQKISE  164 (523)
Q Consensus       106 D~S~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~V~~-------------------~~~~~~~~~~~~  164 (523)
                      |+|+.|++.|+++.....  .++.+.++|+...    +   ++||+|++                   .+..+++..+.-
T Consensus        84 D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~----~---~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~  156 (219)
T TIGR02021        84 DISEQMVQMARNRAQGRDVAGNVEFEVNDLLSL----C---GEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTF  156 (219)
T ss_pred             ECCHHHHHHHHHHHHhcCCCCceEEEECChhhC----C---CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence            999999999998764332  4789999999765    2   78999998                   111111111110


Q ss_pred             --------------ceEEe-cCCeEEEeeCHHHHHHHHHhCCCcEEEEEeE
Q 009871          165 --------------NFYVR-GDGTRAFYFSNDFLTSLFKENGFDVEELGLC  200 (523)
Q Consensus       165 --------------~~~~~-~~g~~~~~~~~~~l~~ll~~~Gf~~~~~~~~  200 (523)
                                    .++.. ......++++.+++.++++++||+++.....
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~~~  207 (219)
T TIGR02021       157 APKTAWLAFLKMIGELFPGSSRATSAYLHPMTDLERALGELGWKIVREGLV  207 (219)
T ss_pred             CCCchHHHHHHHHHhhCcCcccccceEEecHHHHHHHHHHcCceeeeeecc
Confidence                          00000 1123355679999999999999999877544

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=99.38  E-value=3.6e-12  Score=126.24  Aligned_cols=121  Identities=16%  Similarity=0.078  Sum_probs=88.0

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEEE-
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM-  152 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~-  152 (523)
                      .++.+|||||||+|..+..+++..++.+|+|+|+|+.|++.|+++..  ..+++++.+|+.++    ++++++||+|++ 
T Consensus       112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~--~~~i~~i~gD~e~l----p~~~~sFDvVIs~  185 (340)
T PLN02490        112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP--LKECKIIEGDAEDL----PFPTDYADRYVSA  185 (340)
T ss_pred             CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh--ccCCeEEeccHHhC----CCCCCceeEEEEc
Confidence            35679999999999999999888777889999999999999998753  24688999999877    677889999998 


Q ss_pred             ----------------ccccccceeeecceEEecCC--------eEEEeeCHHHHHHHHHhCCCcEEEEEeE
Q 009871          153 ----------------ERLTGKDQKISENFYVRGDG--------TRAFYFSNDFLTSLFKENGFDVEELGLC  200 (523)
Q Consensus       153 ----------------~~~~~~~~~~~~~~~~~~~g--------~~~~~~~~~~l~~ll~~~Gf~~~~~~~~  200 (523)
                                      .+.+++++.+.-.....++.        ....+.+.+++.++++++||+.+++...
T Consensus       186 ~~L~~~~d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~i~~i  257 (340)
T PLN02490        186 GSIEYWPDPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDVKLKRI  257 (340)
T ss_pred             ChhhhCCCHHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEEEEEEc
Confidence                            23334444422000000000        0011347899999999999999887644

>PRK14968 putative methyltransferase; Provisional

Probab=99.38  E-value=1.6e-11  Score=113.01  Aligned_cols=145  Identities=20%  Similarity=0.161  Sum_probs=106.4

Q ss_pred             cchhHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEee
Q 009871          316 LWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRL  395 (523)
Q Consensus       316 ~W~~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l  395 (523)
                      .++.+.+|.+++..    .++++|||+|||+|.++..++.. ..+|+++|+++++++.+++|+..++...  ..+.+...
T Consensus         8 p~~~~~~l~~~~~~----~~~~~vLd~G~G~G~~~~~l~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~--~~~~~~~~   80 (188)
T PRK14968          8 PAEDSFLLAENAVD----KKGDRVLEVGTGSGIVAIVAAKN-GKKVVGVDINPYAVECAKCNAKLNNIRN--NGVEVIRS   80 (188)
T ss_pred             cchhHHHHHHhhhc----cCCCEEEEEccccCHHHHHHHhh-cceEEEEECCHHHHHHHHHHHHHcCCCC--cceEEEec
Confidence            35666777777754    46789999999999888888877 5789999999999999999999887642  12555555


Q ss_pred             ecCCCCcchhhhhhcCCCccEEEEccccCCC---------------------CChHHHHHHHHHHhhccCCCCCCCCCcE
Q 009871          396 EWGNRDHIEAIKEENNEGFEVILGTDVSYIP---------------------EAILPLFATAKELTASSNKSLREDQQPA  454 (523)
Q Consensus       396 dw~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~---------------------~~~~~l~~~l~~ll~~~~~~~~~~~~g~  454 (523)
                      |+.+.        +....||+|+++...+..                     ..+..+++.+.++|         +|+|.
T Consensus        81 d~~~~--------~~~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L---------k~gG~  143 (188)
T PRK14968         81 DLFEP--------FRGDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYL---------KPGGR  143 (188)
T ss_pred             ccccc--------ccccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhc---------CCCeE
Confidence            55432        223489999987655431                     12466788888999         67888


Q ss_pred             EEEEEeecCCChhHHHHHHHHcCCEEEEEcC
Q 009871          455 FILCHIFRQVDEPSMLSAATQCGFRLVDKWP  485 (523)
Q Consensus       455 ~~l~~~~r~~~~~~~~~~~~~~gf~~~~~~~  485 (523)
                      +++.... ......+.+.+.+.||++..+..
T Consensus       144 ~~~~~~~-~~~~~~l~~~~~~~g~~~~~~~~  173 (188)
T PRK14968        144 ILLLQSS-LTGEDEVLEYLEKLGFEAEVVAE  173 (188)
T ss_pred             EEEEEcc-cCCHHHHHHHHHHCCCeeeeeee
Confidence            8776543 22345688889999999887655

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=99.38  E-value=1.9e-11  Score=116.58  Aligned_cols=109  Identities=11%  Similarity=0.046  Sum_probs=84.7

Q ss_pred             CCCCCCeEEEECCCccHHHHHHHhc-C-CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhh
Q 009871          332 TIVAGKKVLELGCGCGGICSMVAAG-S-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEE  409 (523)
Q Consensus       332 ~~~~~~~VLElG~G~G~l~~~~a~~-~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~  409 (523)
                      ...++.+|||+|||+|.++..++.. + ..+|+++|+++.+++.+++|+..++.    .++.+...|..+.       ++
T Consensus        42 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~----~~v~~~~~d~~~~-------~~  110 (231)
T TIGR02752        42 NVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGL----HNVELVHGNAMEL-------PF  110 (231)
T ss_pred             CCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCC----CceEEEEechhcC-------CC
Confidence            3446789999999999888877765 3 35899999999999999999877654    2455554444322       23


Q ss_pred             cCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEe
Q 009871          410 NNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHI  460 (523)
Q Consensus       410 ~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~  460 (523)
                      +.++||+|+++.++.+......+++.+.++|         +|||.+++...
T Consensus       111 ~~~~fD~V~~~~~l~~~~~~~~~l~~~~~~L---------k~gG~l~~~~~  152 (231)
T TIGR02752       111 DDNSFDYVTIGFGLRNVPDYMQVLREMYRVV---------KPGGKVVCLET  152 (231)
T ss_pred             CCCCccEEEEecccccCCCHHHHHHHHHHHc---------CcCeEEEEEEC
Confidence            3568999999988888888899999999999         67999887543

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=99.38  E-value=1.1e-11  Score=112.81  Aligned_cols=124  Identities=15%  Similarity=0.092  Sum_probs=92.4

Q ss_pred             CCCeEEEECCCccHHHHHHHhcC-CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCC
Q 009871          335 AGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG  413 (523)
Q Consensus       335 ~~~~VLElG~G~G~l~~~~a~~~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~  413 (523)
                      ++.+|||+|||+|.++..++..+ ..+|+++|.|+.|++.+++|++.++..    ++.+...+..+.        ...++
T Consensus        42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~----~i~~i~~d~~~~--------~~~~~  109 (181)
T TIGR00138        42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLN----NVEIVNGRAEDF--------QHEEQ  109 (181)
T ss_pred             CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCC----CeEEEecchhhc--------cccCC
Confidence            57899999999998888777664 458999999999999999999887653    466666665432        01468


Q ss_pred             ccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhHHH---HHHHHcCCEEEEEcC
Q 009871          414 FEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSML---SAATQCGFRLVDKWP  485 (523)
Q Consensus       414 fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~~---~~~~~~gf~~~~~~~  485 (523)
                      ||+|++..    ...++.+++.+.++|         +|||.+++.+..  ....++.   +.+...||++.+.-+
T Consensus       110 fD~I~s~~----~~~~~~~~~~~~~~L---------kpgG~lvi~~~~--~~~~~~~~~~e~~~~~~~~~~~~~~  169 (181)
T TIGR00138       110 FDVITSRA----LASLNVLLELTLNLL---------KVGGYFLAYKGK--KYLDEIEEAKRKCQVLGVEPLEVPP  169 (181)
T ss_pred             ccEEEehh----hhCHHHHHHHHHHhc---------CCCCEEEEEcCC--CcHHHHHHHHHhhhhcCceEeeccc
Confidence            99999864    345778889999999         779999887533  3333333   444457999887755

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=99.37  E-value=4.3e-12  Score=112.71  Aligned_cols=108  Identities=16%  Similarity=0.182  Sum_probs=89.0

Q ss_pred             CCCeEEEECCCccHHHHHHHh-cC-CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCC
Q 009871          335 AGKKVLELGCGCGGICSMVAA-GS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNE  412 (523)
Q Consensus       335 ~~~~VLElG~G~G~l~~~~a~-~~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~  412 (523)
                      ++.+|||||||+|.++..++. .+ ..+|+++|++++|++.++.+++.++..    ++.+...|+.+...     .++ .
T Consensus         3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~----ni~~~~~d~~~l~~-----~~~-~   72 (152)
T PF13847_consen    3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLD----NIEFIQGDIEDLPQ-----ELE-E   72 (152)
T ss_dssp             TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTST----TEEEEESBTTCGCG-----CSS-T
T ss_pred             CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccccc----ccceEEeehhcccc-----ccC-C
Confidence            578999999999998888884 43 568999999999999999999987763    67888777765211     012 6


Q ss_pred             CccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee
Q 009871          413 GFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIF  461 (523)
Q Consensus       413 ~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~  461 (523)
                      .||+|++..++++......+++.+.++|         +++|.+++....
T Consensus        73 ~~D~I~~~~~l~~~~~~~~~l~~~~~~l---------k~~G~~i~~~~~  112 (152)
T PF13847_consen   73 KFDIIISNGVLHHFPDPEKVLKNIIRLL---------KPGGILIISDPN  112 (152)
T ss_dssp             TEEEEEEESTGGGTSHHHHHHHHHHHHE---------EEEEEEEEEEEE
T ss_pred             CeeEEEEcCchhhccCHHHHHHHHHHHc---------CCCcEEEEEECC
Confidence            8999999999999999999999999999         669999888776

...

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=99.37  E-value=4.1e-12  Score=115.71  Aligned_cols=116  Identities=19%  Similarity=0.154  Sum_probs=86.4

Q ss_pred             CCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC-CCcEEEEEeeccCCccCCCCCCCceeEEEEc
Q 009871           75 GRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT-ETRVSTFVCDLISDDLSRQISPSSIDIVTME  153 (523)
Q Consensus        75 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~-~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~  153 (523)
                      .+.+|||+|||+|..+..++..+++.+|+|+|+|+.|++.++++.+.. ..+++++++|+.+.    + .+++||+|++.
T Consensus        42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~----~-~~~~fD~I~s~  116 (181)
T TIGR00138        42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDF----Q-HEEQFDVITSR  116 (181)
T ss_pred             CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhc----c-ccCCccEEEeh
Confidence            478999999999999999988888889999999999999998875433 24699999999865    2 35789999992


Q ss_pred             cc------cccceeeecceEEecCCeEEEee---CHHHHHHHHHh---CCCcEEEEEeE
Q 009871          154 RL------TGKDQKISENFYVRGDGTRAFYF---SNDFLTSLFKE---NGFDVEELGLC  200 (523)
Q Consensus       154 ~~------~~~~~~~~~~~~~~~~g~~~~~~---~~~~l~~ll~~---~Gf~~~~~~~~  200 (523)
                      .+      .+...     -.++++|.++++.   ...++..+.+.   .||+.+++...
T Consensus       117 ~~~~~~~~~~~~~-----~~LkpgG~lvi~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~  170 (181)
T TIGR00138       117 ALASLNVLLELTL-----NLLKVGGYFLAYKGKKYLDEIEEAKRKCQVLGVEPLEVPPL  170 (181)
T ss_pred             hhhCHHHHHHHHH-----HhcCCCCEEEEEcCCCcHHHHHHHHHhhhhcCceEeecccc
Confidence            11      11111     2578888887765   34455555554   78988776543

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=99.36  E-value=4.1e-12  Score=125.10  Aligned_cols=116  Identities=22%  Similarity=0.267  Sum_probs=80.9

Q ss_pred             CCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC------CCcEEEEEeeccCCccCCCCCCCcee
Q 009871           75 GRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT------ETRVSTFVCDLISDDLSRQISPSSID  148 (523)
Q Consensus        75 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~------~~~v~~~~~d~~~~~~~~~~~~~~fD  148 (523)
                      ++.+|||||||+|.++..+++.  +.+|+|+|+|+.|++.|+++....      ..+++|.++|+..+       +++||
T Consensus       144 ~~~~VLDlGcGtG~~a~~la~~--g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l-------~~~fD  214 (315)
T PLN02585        144 AGVTVCDAGCGTGSLAIPLALE--GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL-------SGKYD  214 (315)
T ss_pred             CCCEEEEecCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc-------CCCcC
Confidence            5679999999999999999987  568999999999999999976432      24578888887543       47899


Q ss_pred             EEEE----ccc--------------cccceeeec---ce------------EEe-cCCeEEEeeCHHHHHHHHHhCCCcE
Q 009871          149 IVTM----ERL--------------TGKDQKISE---NF------------YVR-GDGTRAFYFSNDFLTSLFKENGFDV  194 (523)
Q Consensus       149 ~V~~----~~~--------------~~~~~~~~~---~~------------~~~-~~g~~~~~~~~~~l~~ll~~~Gf~~  194 (523)
                      +|+|    ..+              ..++..+..   ..            +.. ...+..|+++.+++.++++++||++
T Consensus       215 ~Vv~~~vL~H~p~~~~~~ll~~l~~l~~g~liIs~~p~~~~~~~l~~~g~~~~g~~~~~r~y~~s~eel~~lL~~AGf~v  294 (315)
T PLN02585        215 TVTCLDVLIHYPQDKADGMIAHLASLAEKRLIISFAPKTLYYDILKRIGELFPGPSKATRAYLHAEADVERALKKAGWKV  294 (315)
T ss_pred             EEEEcCEEEecCHHHHHHHHHHHHhhcCCEEEEEeCCcchHHHHHHHHHhhcCCCCcCceeeeCCHHHHHHHHHHCCCEE
Confidence            9998    000              011111100   00            000 0123445668999999999999998


Q ss_pred             EEEEe
Q 009871          195 EELGL  199 (523)
Q Consensus       195 ~~~~~  199 (523)
                      ...+.
T Consensus       295 ~~~~~  299 (315)
T PLN02585        295 ARREM  299 (315)
T ss_pred             EEEEE
Confidence            76543

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.36  E-value=3.1e-12  Score=123.82  Aligned_cols=119  Identities=18%  Similarity=0.283  Sum_probs=86.1

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC--CCcEEEEEeeccCCccCCCCCCCceeEEE
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISDDLSRQISPSSIDIVT  151 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~~~~~~~~~~fD~V~  151 (523)
                      ..+.+|||+|||+|..+..+++.  +.+|+|+|+|+.|++.|+++....  ..+++++++|+.++.   ++++++||+|+
T Consensus        43 ~~~~~vLDiGcG~G~~a~~la~~--g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~---~~~~~~fD~V~  117 (255)
T PRK11036         43 PRPLRVLDAGGGEGQTAIKLAEL--GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIA---QHLETPVDLIL  117 (255)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHh---hhcCCCCCEEE
Confidence            45679999999999999999988  567999999999999999876433  257899999997652   24568999999


Q ss_pred             E-----------------ccccccceeeecceEEe----------c------CC---------eEEEeeCHHHHHHHHHh
Q 009871          152 M-----------------ERLTGKDQKISENFYVR----------G------DG---------TRAFYFSNDFLTSLFKE  189 (523)
Q Consensus       152 ~-----------------~~~~~~~~~~~~~~~~~----------~------~g---------~~~~~~~~~~l~~ll~~  189 (523)
                      +                 .+++++++.+.-.++-.          +      .+         ...++++++++.+++++
T Consensus       118 ~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~l~~  197 (255)
T PRK11036        118 FHAVLEWVADPKSVLQTLWSVLRPGGALSLMFYNANGLLMHNMVAGNFDYVQAGMPKRKKRTLSPDYPLDPEQVYQWLEE  197 (255)
T ss_pred             ehhHHHhhCCHHHHHHHHHHHcCCCeEEEEEEECccHHHHHHHHccChHHHHhcCccccccCCCCCCCCCHHHHHHHHHH
Confidence            9                 34445555543111000          0      00         01124578999999999


Q ss_pred             CCCcEEEE
Q 009871          190 NGFDVEEL  197 (523)
Q Consensus       190 ~Gf~~~~~  197 (523)
                      +||+++..
T Consensus       198 aGf~~~~~  205 (255)
T PRK11036        198 AGWQIMGK  205 (255)
T ss_pred             CCCeEeee
Confidence            99998654

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.36  E-value=2.4e-12  Score=104.15  Aligned_cols=95  Identities=14%  Similarity=0.210  Sum_probs=75.4

Q ss_pred             EEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCccEEEE
Q 009871          340 LELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVILG  419 (523)
Q Consensus       340 LElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~fD~Ii~  419 (523)
                      ||+|||+|..+..+++.+..+|+++|+++.+++.++++...+       .+.+...+..+.       ++++++||+|++
T Consensus         1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~-------~~~~~~~d~~~l-------~~~~~sfD~v~~   66 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNE-------GVSFRQGDAEDL-------PFPDNSFDVVFS   66 (95)
T ss_dssp             EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTS-------TEEEEESBTTSS-------SS-TT-EEEEEE
T ss_pred             CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhccccc-------CchheeehHHhC-------cccccccccccc
Confidence            899999998888888886779999999999999999877653       333555444432       456789999999


Q ss_pred             ccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEE
Q 009871          420 TDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFIL  457 (523)
Q Consensus       420 ~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l  457 (523)
                      ..++++.+....+++.+.++|         +|+|.+++
T Consensus        67 ~~~~~~~~~~~~~l~e~~rvL---------k~gG~l~~   95 (95)
T PF08241_consen   67 NSVLHHLEDPEAALREIYRVL---------KPGGRLVI   95 (95)
T ss_dssp             ESHGGGSSHHHHHHHHHHHHE---------EEEEEEEE
T ss_pred             ccceeeccCHHHHHHHHHHHc---------CcCeEEeC
Confidence            999999999999999999999         67998875

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.35  E-value=2.4e-12  Score=107.91  Aligned_cols=75  Identities=21%  Similarity=0.344  Sum_probs=63.0

Q ss_pred             CCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhcc--ccCCCcEEEEEeec-cCCccCCCCCCCceeEEE
Q 009871           75 GRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHK--DFTETRVSTFVCDL-ISDDLSRQISPSSIDIVT  151 (523)
Q Consensus        75 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~--~~~~~~v~~~~~d~-~~~~~~~~~~~~~fD~V~  151 (523)
                      ++.+|||||||+|..+..+++++++++|+|+|+|+.|++.|+++.  .....+++++++|+ ...     -..+.||+|+
T Consensus         1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~~~~~D~v~   75 (112)
T PF12847_consen    1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDP-----DFLEPFDLVI   75 (112)
T ss_dssp             TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGT-----TTSSCEEEEE
T ss_pred             CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCc-----ccCCCCCEEE
Confidence            468999999999999999999878999999999999999999987  23458999999999 322     1234699998


Q ss_pred             Ecc
Q 009871          152 MER  154 (523)
Q Consensus       152 ~~~  154 (523)
                      +..
T Consensus        76 ~~~   78 (112)
T PF12847_consen   76 CSG   78 (112)
T ss_dssp             ECS
T ss_pred             ECC
Confidence            833

...

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=99.35  E-value=1.8e-11  Score=114.23  Aligned_cols=150  Identities=15%  Similarity=0.144  Sum_probs=92.0

Q ss_pred             HHHHHHHhcccccc-cchhhhHHHHhhhhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccc--
Q 009871           44 YWDLFYKRHQDRFF-KDRHYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKD--  120 (523)
Q Consensus        44 ~Wd~~y~~~~~~f~-~~~~~l~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~--  120 (523)
                      +||..|+....-|. ...+-...++...+..+++.+|||+|||.|+.+..|+++  +.+|+|||+|+.+++.+.+...  
T Consensus         2 ~Wd~ry~~~~~~w~~~~p~~~l~~~~~~l~~~~~~rvLd~GCG~G~da~~LA~~--G~~V~gvD~S~~Ai~~~~~~~~~~   79 (213)
T TIGR03840         2 FWHERWQEGQIGFHQSEVNPLLVKHWPALGLPAGARVFVPLCGKSLDLAWLAEQ--GHRVLGVELSEIAVEQFFAENGLT   79 (213)
T ss_pred             hHHHHHhcCCCCCccCCCCHHHHHHHHhhCCCCCCeEEEeCCCchhHHHHHHhC--CCeEEEEeCCHHHHHHHHHHcCCC
Confidence            67777766543332 112222222322232246789999999999999999998  6779999999999998644221  


Q ss_pred             -----------cCCCcEEEEEeeccCCccCCCCCCCceeEEEE-------------------ccccccceee-ecceEEe
Q 009871          121 -----------FTETRVSTFVCDLISDDLSRQISPSSIDIVTM-------------------ERLTGKDQKI-SENFYVR  169 (523)
Q Consensus       121 -----------~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~-------------------~~~~~~~~~~-~~~~~~~  169 (523)
                                 ....++++.++|+.+++..   ..+.||.|+-                   .+++++++.+ ...+...
T Consensus        80 ~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~---~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~  156 (213)
T TIGR03840        80 PTVTQQGEFTRYRAGNIEIFCGDFFALTAA---DLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDYD  156 (213)
T ss_pred             cceeccccceeeecCceEEEEccCCCCCcc---cCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEcC
Confidence                       1235789999999876311   1346888775                   3444555432 1111110


Q ss_pred             --cCCeEEEeeCHHHHHHHHHhCCCcEEEEEe
Q 009871          170 --GDGTRAFYFSNDFLTSLFKENGFDVEELGL  199 (523)
Q Consensus       170 --~~g~~~~~~~~~~l~~ll~~~Gf~~~~~~~  199 (523)
                        ..+...+..+.+++.++|.. +|.+..+..
T Consensus       157 ~~~~~gpp~~~~~~eL~~~f~~-~~~i~~~~~  187 (213)
T TIGR03840       157 QSEMAGPPFSVSPAEVEALYGG-HYEIELLES  187 (213)
T ss_pred             CCCCCCcCCCCCHHHHHHHhcC-CceEEEEee
Confidence              11223345689999999963 576655543

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=99.35  E-value=2.1e-11  Score=115.73  Aligned_cols=129  Identities=13%  Similarity=0.162  Sum_probs=102.2

Q ss_pred             CeEEEECCCccHHHHHHHhcC-CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCcc
Q 009871          337 KKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFE  415 (523)
Q Consensus       337 ~~VLElG~G~G~l~~~~a~~~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~fD  415 (523)
                      ++|||+|||+|..+..++... ..+|+++|+|+.+++.+++++...+..   .++.+...|.... .      + +++||
T Consensus         1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~---~~i~~~~~d~~~~-~------~-~~~fD   69 (224)
T smart00828        1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQ---GRIRIFYRDSAKD-P------F-PDTYD   69 (224)
T ss_pred             CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCC---cceEEEecccccC-C------C-CCCCC
Confidence            479999999998888888775 458999999999999999999887665   4566666665432 1      1 35899


Q ss_pred             EEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecC--------------CChhHHHHHHHHcCCEEE
Q 009871          416 VILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ--------------VDEPSMLSAATQCGFRLV  481 (523)
Q Consensus       416 ~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~--------------~~~~~~~~~~~~~gf~~~  481 (523)
                      +|++..++++......+++.+.++|         +|||.+++......              .+...+.+.+.+.||++.
T Consensus        70 ~I~~~~~l~~~~~~~~~l~~~~~~L---------kpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~  140 (224)
T smart00828       70 LVFGFEVIHHIKDKMDLFSNISRHL---------KDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLRVV  140 (224)
T ss_pred             EeehHHHHHhCCCHHHHHHHHHHHc---------CCCCEEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCeEE
Confidence            9999999999888999999999999         77999988764311              123457778889999998


Q ss_pred             EEcC
Q 009871          482 DKWP  485 (523)
Q Consensus       482 ~~~~  485 (523)
                      +...
T Consensus       141 ~~~~  144 (224)
T smart00828      141 EGVD  144 (224)
T ss_pred             EeEE
Confidence            8754

>TIGR00477 tehB tellurite resistance protein TehB

Probab=99.35  E-value=2.1e-11  Score=112.78  Aligned_cols=102  Identities=22%  Similarity=0.225  Sum_probs=78.4

Q ss_pred             CCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCC
Q 009871          334 VAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG  413 (523)
Q Consensus       334 ~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~  413 (523)
                      .++.+|||+|||+|.++..++.++ .+|+++|+|+.|++.+++++..+++.     +.+...+....       ++ +.+
T Consensus        29 ~~~~~vLDiGcG~G~~a~~la~~g-~~V~~iD~s~~~l~~a~~~~~~~~~~-----v~~~~~d~~~~-------~~-~~~   94 (195)
T TIGR00477        29 VAPCKTLDLGCGQGRNSLYLSLAG-YDVRAWDHNPASIASVLDMKARENLP-----LRTDAYDINAA-------AL-NED   94 (195)
T ss_pred             CCCCcEEEeCCCCCHHHHHHHHCC-CeEEEEECCHHHHHHHHHHHHHhCCC-----ceeEeccchhc-------cc-cCC
Confidence            356799999999999888888876 48999999999999999988876653     33333333211       11 347


Q ss_pred             ccEEEEccccCCC--CChHHHHHHHHHHhhccCCCCCCCCCcEEEEE
Q 009871          414 FEVILGTDVSYIP--EAILPLFATAKELTASSNKSLREDQQPAFILC  458 (523)
Q Consensus       414 fD~Ii~~d~~y~~--~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~  458 (523)
                      ||+|+++.++++.  +....+++.+.++|         +|||.+++.
T Consensus        95 fD~I~~~~~~~~~~~~~~~~~l~~~~~~L---------kpgG~lli~  132 (195)
T TIGR00477        95 YDFIFSTVVFMFLQAGRVPEIIANMQAHT---------RPGGYNLIV  132 (195)
T ss_pred             CCEEEEecccccCCHHHHHHHHHHHHHHh---------CCCcEEEEE
Confidence            9999999888764  46789999999999         779985544

Part of a tellurite-reducing operon tehA and tehB

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=99.35  E-value=1.3e-10  Score=118.24  Aligned_cols=172  Identities=17%  Similarity=0.134  Sum_probs=112.8

Q ss_pred             EEEEEcCceEEEEEecccccccCCCcccccchhHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcC
Q 009871          287 IEVNLRDRSFKIEVLSKEYQHTCRSTGLMLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDG  366 (523)
Q Consensus       287 ~~~~~~~~~~~i~~~~~~~~~~~~~~G~~~W~~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~  366 (523)
                      +.+..+|..+.|....+      ..||..+=.  ...-.++..   ..++++|||+|||||+++..++..++.+|+++|+
T Consensus       183 ~~v~E~g~~f~vdl~~g------~ktG~flDq--r~~R~~~~~---~~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~  251 (396)
T PRK15128        183 LPIEEHGMKLLVDIQGG------HKTGYYLDQ--RDSRLATRR---YVENKRVLNCFSYTGGFAVSALMGGCSQVVSVDT  251 (396)
T ss_pred             EEEEECCEEEEEecccc------cccCcChhh--HHHHHHHHH---hcCCCeEEEeccCCCHHHHHHHhCCCCEEEEEEC
Confidence            44667888888774332      356643221  111112211   1368899999999998887777777779999999


Q ss_pred             ChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhh--cCCCccEEEEccccCCCC---------ChHHHHHH
Q 009871          367 DSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEE--NNEGFEVILGTDVSYIPE---------AILPLFAT  435 (523)
Q Consensus       367 ~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~--~~~~fD~Ii~~d~~y~~~---------~~~~l~~~  435 (523)
                      |+.+++.+++|+..|++..  .++.+...|..+.     +..+  ...+||+|++....+...         .+..++..
T Consensus       252 s~~al~~a~~N~~~Ngl~~--~~v~~i~~D~~~~-----l~~~~~~~~~fDlVilDPP~f~~~k~~l~~~~~~y~~l~~~  324 (396)
T PRK15128        252 SQEALDIARQNVELNKLDL--SKAEFVRDDVFKL-----LRTYRDRGEKFDVIVMDPPKFVENKSQLMGACRGYKDINML  324 (396)
T ss_pred             CHHHHHHHHHHHHHcCCCC--CcEEEEEccHHHH-----HHHHHhcCCCCCEEEECCCCCCCChHHHHHHHHHHHHHHHH
Confidence            9999999999999998742  2455555444321     1122  245899999855443322         35556666


Q ss_pred             HHHHhhccCCCCCCCCCcEEEEEEeecCCChhHHHHHH----HHcCCEEEEEcC
Q 009871          436 AKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAA----TQCGFRLVDKWP  485 (523)
Q Consensus       436 l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~~~~~----~~~gf~~~~~~~  485 (523)
                      ..++|         +++|.+++|......+.+.|.+..    .+.|-++..+..
T Consensus       325 a~~lL---------k~gG~lv~~scs~~~~~~~f~~~v~~aa~~~~~~~~~l~~  369 (396)
T PRK15128        325 AIQLL---------NPGGILLTFSCSGLMTSDLFQKIIADAAIDAGRDVQFIEQ  369 (396)
T ss_pred             HHHHc---------CCCeEEEEEeCCCcCCHHHHHHHHHHHHHHcCCeEEEEEE
Confidence            77888         679999998887777776665544    456656655543

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=99.34  E-value=6.5e-11  Score=115.85  Aligned_cols=167  Identities=14%  Similarity=0.074  Sum_probs=110.5

Q ss_pred             ceEEEEEEcCceEEEEEecccccccCCCcccccchhHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcC-CCEEE
Q 009871          284 NEMIEVNLRDRSFKIEVLSKEYQHTCRSTGLMLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGS-ADLVV  362 (523)
Q Consensus       284 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~G~~~W~~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~-~~~V~  362 (523)
                      +-+-...|.|.++.|.  ++++        .+..+...++...+.......++.+|||+|||+|.++..++... ..+|+
T Consensus        80 yi~g~~~f~g~~f~v~--~~vl--------ipr~~te~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~~~la~~~~~~~v~  149 (284)
T TIGR03533        80 YLTNEAWFAGLEFYVD--ERVL--------IPRSPIAELIEDGFAPWLEPEPVKRILDLCTGSGCIAIACAYAFPEAEVD  149 (284)
T ss_pred             HHcCCCeecCcEEEEC--CCCc--------cCCCchHHHHHHHHHHHhccCCCCEEEEEeCchhHHHHHHHHHCCCCEEE
Confidence            3444556667666654  2221        23444455555544322111245689999999999998888874 45899


Q ss_pred             EEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCccEEEEccccCCCC---------------
Q 009871          363 ATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPE---------------  427 (523)
Q Consensus       363 ~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~---------------  427 (523)
                      ++|+|+.+++.|++|+..|++.   .++.+...|+.+.        ++..+||+|+++.......               
T Consensus       150 avDis~~al~~A~~n~~~~~~~---~~i~~~~~D~~~~--------~~~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~  218 (284)
T TIGR03533       150 AVDISPDALAVAEINIERHGLE---DRVTLIQSDLFAA--------LPGRKYDLIVSNPPYVDAEDMADLPAEYHHEPEL  218 (284)
T ss_pred             EEECCHHHHHHHHHHHHHcCCC---CcEEEEECchhhc--------cCCCCccEEEECCCCCCccchhhCCHhhhcCHHH
Confidence            9999999999999999998774   4577776665432        2235799999974322111               


Q ss_pred             ----------ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhHHHHHHHHcCCEEEEE
Q 009871          428 ----------AILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLVDK  483 (523)
Q Consensus       428 ----------~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~~~~~~~~gf~~~~~  483 (523)
                                .+..+++.+.++|         +|||.+++-...   +...+.+.+.+.||.....
T Consensus       219 al~gg~dGl~~~~~il~~a~~~L---------~~gG~l~~e~g~---~~~~v~~~~~~~~~~~~~~  272 (284)
T TIGR03533       219 ALASGEDGLDLVRRILAEAADHL---------NENGVLVVEVGN---SMEALEEAYPDVPFTWLEF  272 (284)
T ss_pred             HhcCCCcHHHHHHHHHHHHHHhc---------CCCCEEEEEECc---CHHHHHHHHHhCCCceeee
Confidence                      2356677788888         679998876543   3346778888888776443

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=99.34  E-value=8.5e-12  Score=115.63  Aligned_cols=121  Identities=20%  Similarity=0.206  Sum_probs=82.7

Q ss_pred             hhhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC-CCcEEEEEeeccCCccCCCCCCCce
Q 009871           69 RYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT-ETRVSTFVCDLISDDLSRQISPSSI  147 (523)
Q Consensus        69 ~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~-~~~v~~~~~d~~~~~~~~~~~~~~f  147 (523)
                      +.+...++.+|||+|||+|.++..|+++  +.+|+|+|+|+.|++.|+++.... ..++++.+.|+.+.    ++ +++|
T Consensus        24 ~~l~~~~~~~vLDiGcG~G~~a~~La~~--g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~----~~-~~~f   96 (197)
T PRK11207         24 EAVKVVKPGKTLDLGCGNGRNSLYLAAN--GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNL----TF-DGEY   96 (197)
T ss_pred             HhcccCCCCcEEEECCCCCHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhC----Cc-CCCc
Confidence            3444456789999999999999999987  567999999999999999865433 24588889998765    33 3579


Q ss_pred             eEEEE-------------------ccccccceee-ecceEEecC----CeEEEeeCHHHHHHHHHhCCCcEEEEE
Q 009871          148 DIVTM-------------------ERLTGKDQKI-SENFYVRGD----GTRAFYFSNDFLTSLFKENGFDVEELG  198 (523)
Q Consensus       148 D~V~~-------------------~~~~~~~~~~-~~~~~~~~~----g~~~~~~~~~~l~~ll~~~Gf~~~~~~  198 (523)
                      |+|++                   .+.+++++.+ ...++...+    ....+.++.+++.++++  ||+++...
T Consensus        97 D~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~--~~~~~~~~  169 (197)
T PRK11207         97 DFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYE--GWEMVKYN  169 (197)
T ss_pred             CEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCCCCCCCCCCCCccCHHHHHHHhC--CCeEEEee
Confidence            99998                   2223444432 111111100    11123458889999997  89876653

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=99.34  E-value=2.7e-12  Score=118.39  Aligned_cols=110  Identities=15%  Similarity=0.190  Sum_probs=84.9

Q ss_pred             CCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCC--CceEEEeeecCCCCcchhhhhhcC
Q 009871          334 VAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFL--AKLITKRLEWGNRDHIEAIKEENN  411 (523)
Q Consensus       334 ~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~--~~v~~~~ldw~~~~~~~~~~~~~~  411 (523)
                      ..|++|||+|||+|.++..+|..| +.|+++|.++.|++.|++....+-.....  .++.+...+.   +.      . .
T Consensus        88 ~~g~~ilDvGCGgGLLSepLArlg-a~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~---E~------~-~  156 (282)
T KOG1270|consen   88 LLGMKILDVGCGGGLLSEPLARLG-AQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDV---EG------L-T  156 (282)
T ss_pred             cCCceEEEeccCccccchhhHhhC-CeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcch---hh------c-c
Confidence            457899999999998888888887 57999999999999999885554333210  0122222111   11      1 3


Q ss_pred             CCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecC
Q 009871          412 EGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ  463 (523)
Q Consensus       412 ~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~  463 (523)
                      +.||.|++++++.|..+++.++..+.++|         +|+|.++++...|.
T Consensus       157 ~~fDaVvcsevleHV~dp~~~l~~l~~~l---------kP~G~lfittinrt  199 (282)
T KOG1270|consen  157 GKFDAVVCSEVLEHVKDPQEFLNCLSALL---------KPNGRLFITTINRT  199 (282)
T ss_pred             cccceeeeHHHHHHHhCHHHHHHHHHHHh---------CCCCceEeeehhhh
Confidence            46999999999999999999999999999         78999999988864

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=99.33  E-value=1.5e-11  Score=122.45  Aligned_cols=127  Identities=17%  Similarity=0.199  Sum_probs=89.4

Q ss_pred             hhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhcccc--CCCcEEEEEeeccCCccCCCCCCCce
Q 009871           70 YFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDF--TETRVSTFVCDLISDDLSRQISPSSI  147 (523)
Q Consensus        70 ~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~--~~~~v~~~~~d~~~~~~~~~~~~~~f  147 (523)
                      .++...+++|||||||+|.++..+++.++. .|+|+|+|+.|+.+++.....  ...++.+..+|+.++    ++ +++|
T Consensus       117 ~l~~l~g~~VLDIGCG~G~~~~~la~~g~~-~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~l----p~-~~~F  190 (322)
T PRK15068        117 HLSPLKGRTVLDVGCGNGYHMWRMLGAGAK-LVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQL----PA-LKAF  190 (322)
T ss_pred             hhCCCCCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHC----CC-cCCc
Confidence            344456789999999999999999988644 599999999999876543221  235799999999877    55 6789


Q ss_pred             eEEEE-----------------ccccccceeeec-ceEEecCCe--------------EEEeeCHHHHHHHHHhCCCcEE
Q 009871          148 DIVTM-----------------ERLTGKDQKISE-NFYVRGDGT--------------RAFYFSNDFLTSLFKENGFDVE  195 (523)
Q Consensus       148 D~V~~-----------------~~~~~~~~~~~~-~~~~~~~g~--------------~~~~~~~~~l~~ll~~~Gf~~~  195 (523)
                      |+|+|                 .+.+++++.+.- ..+..+++.              ..+..+.+++..+|+++||..+
T Consensus       191 D~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~~~~~~~~lps~~~l~~~L~~aGF~~i  270 (322)
T PRK15068        191 DTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRYAKMRNVYFIPSVPALKNWLERAGFKDV  270 (322)
T ss_pred             CEEEECChhhccCCHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHHhcCccceeCCCHHHHHHHHHHcCCceE
Confidence            99999                 333455544321 111111111              1122488999999999999998


Q ss_pred             EEEeEee
Q 009871          196 ELGLCCK  202 (523)
Q Consensus       196 ~~~~~~~  202 (523)
                      ++.....
T Consensus       271 ~~~~~~~  277 (322)
T PRK15068        271 RIVDVSV  277 (322)
T ss_pred             EEEeCCC
Confidence            8865544

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=99.33  E-value=2.9e-12  Score=126.02  Aligned_cols=116  Identities=16%  Similarity=0.224  Sum_probs=81.6

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEEE-
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM-  152 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~-  152 (523)
                      .++++|||+|||+|.++.++++.  +.+|+|+|+|+.|++.++++....+.++++.+.|+...    .+ +++||+|++ 
T Consensus       119 ~~~~~vLDlGcG~G~~~~~la~~--g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~----~~-~~~fD~I~~~  191 (287)
T PRK12335        119 VKPGKALDLGCGQGRNSLYLALL--GFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSA----SI-QEEYDFILST  191 (287)
T ss_pred             cCCCCEEEeCCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcc----cc-cCCccEEEEc
Confidence            34569999999999999999987  57899999999999999988765555788888888754    23 678999998 


Q ss_pred             ------------------ccccccceeeecceEEe-cC---C-eEEEeeCHHHHHHHHHhCCCcEEEEE
Q 009871          153 ------------------ERLTGKDQKISENFYVR-GD---G-TRAFYFSNDFLTSLFKENGFDVEELG  198 (523)
Q Consensus       153 ------------------~~~~~~~~~~~~~~~~~-~~---g-~~~~~~~~~~l~~ll~~~Gf~~~~~~  198 (523)
                                        .+.+++++.+.-..... .+   + ...+.++.+++.+++.  +|+++...
T Consensus       192 ~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~~~p~~~~~~~~el~~~~~--~~~i~~~~  258 (287)
T PRK12335        192 VVLMFLNRERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPCPMPFSFTFKEGELKDYYQ--DWEIVKYN  258 (287)
T ss_pred             chhhhCCHHHHHHHHHHHHHhcCCCcEEEEEEecccccCCCCCCCCcccCHHHHHHHhC--CCEEEEEe
Confidence                              22223333311000000 00   1 1124468999999997  58887764

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=99.32  E-value=3.3e-11  Score=117.85  Aligned_cols=133  Identities=19%  Similarity=0.220  Sum_probs=101.0

Q ss_pred             CCCCCeEEEECCCccHHHHHHHhc-CC-CEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhc
Q 009871          333 IVAGKKVLELGCGCGGICSMVAAG-SA-DLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEEN  410 (523)
Q Consensus       333 ~~~~~~VLElG~G~G~l~~~~a~~-~~-~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~  410 (523)
                      +.++.+|||+|||+|..+..+++. +. .+|+++|+++.+++.+++|+..++.    .++.+...++.+.       +++
T Consensus        75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~----~~v~~~~~d~~~l-------~~~  143 (272)
T PRK11873         75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGY----TNVEFRLGEIEAL-------PVA  143 (272)
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCC----CCEEEEEcchhhC-------CCC
Confidence            457889999999999766666654 43 3799999999999999999987665    2455555544322       233


Q ss_pred             CCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec---------------------CCChhHH
Q 009871          411 NEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFR---------------------QVDEPSM  469 (523)
Q Consensus       411 ~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r---------------------~~~~~~~  469 (523)
                      +++||+|+++.++++......+++.+.++|         +|||.+++.....                     .....++
T Consensus       144 ~~~fD~Vi~~~v~~~~~d~~~~l~~~~r~L---------kpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~  214 (272)
T PRK11873        144 DNSVDVIISNCVINLSPDKERVFKEAFRVL---------KPGGRFAISDVVLRGELPEEIRNDAELYAGCVAGALQEEEY  214 (272)
T ss_pred             CCceeEEEEcCcccCCCCHHHHHHHHHHHc---------CCCcEEEEEEeeccCCCCHHHHHhHHHHhccccCCCCHHHH
Confidence            568999999988888888899999999999         7799998864321                     1234567


Q ss_pred             HHHHHHcCCEEEEEcC
Q 009871          470 LSAATQCGFRLVDKWP  485 (523)
Q Consensus       470 ~~~~~~~gf~~~~~~~  485 (523)
                      .+.+++.||...++..
T Consensus       215 ~~~l~~aGf~~v~i~~  230 (272)
T PRK11873        215 LAMLAEAGFVDITIQP  230 (272)
T ss_pred             HHHHHHCCCCceEEEe
Confidence            7888899999877643

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.32  E-value=2.6e-12  Score=103.96  Aligned_cols=66  Identities=23%  Similarity=0.222  Sum_probs=55.7

Q ss_pred             EEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871           80 LEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM  152 (523)
Q Consensus        80 LDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~  152 (523)
                      ||+|||+|..+..++++ ++.+|+|+|+|+.|++.++++...  .++.+.++|++++    |+++++||+|++
T Consensus         1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~--~~~~~~~~d~~~l----~~~~~sfD~v~~   66 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKN--EGVSFRQGDAEDL----PFPDNSFDVVFS   66 (95)
T ss_dssp             EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTT--STEEEEESBTTSS----SS-TT-EEEEEE
T ss_pred             CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhcccc--cCchheeehHHhC----cccccccccccc
Confidence            89999999999999999 678899999999999999997643  4566999999988    888999999999

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=99.32  E-value=9.5e-12  Score=111.40  Aligned_cols=119  Identities=18%  Similarity=0.278  Sum_probs=89.6

Q ss_pred             CCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCC
Q 009871          333 IVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNE  412 (523)
Q Consensus       333 ~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~  412 (523)
                      ..++.+|||+|||+|.++..++..+. +|+++|+++.+++.      .        .+.....+-.       ....+++
T Consensus        20 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~g~D~~~~~~~~------~--------~~~~~~~~~~-------~~~~~~~   77 (161)
T PF13489_consen   20 LKPGKRVLDIGCGTGSFLRALAKRGF-EVTGVDISPQMIEK------R--------NVVFDNFDAQ-------DPPFPDG   77 (161)
T ss_dssp             TTTTSEEEEESSTTSHHHHHHHHTTS-EEEEEESSHHHHHH------T--------TSEEEEEECH-------THHCHSS
T ss_pred             cCCCCEEEEEcCCCCHHHHHHHHhCC-EEEEEECCHHHHhh------h--------hhhhhhhhhh-------hhhcccc
Confidence            35788999999999988888877766 89999999999887      1        1111111000       0123467


Q ss_pred             CccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecC----------------------CChhHHH
Q 009871          413 GFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ----------------------VDEPSML  470 (523)
Q Consensus       413 ~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~----------------------~~~~~~~  470 (523)
                      +||+|++++++++..+...+++.+.++|         +|+|.++++...+.                      .+...+.
T Consensus        78 ~fD~i~~~~~l~~~~d~~~~l~~l~~~L---------kpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (161)
T PF13489_consen   78 SFDLIICNDVLEHLPDPEEFLKELSRLL---------KPGGYLVISDPNRDDPSPRSFLKWRYDRPYGGHVHFFSPDELR  148 (161)
T ss_dssp             SEEEEEEESSGGGSSHHHHHHHHHHHCE---------EEEEEEEEEEEBTTSHHHHHHHHCCGTCHHTTTTEEBBHHHHH
T ss_pred             chhhHhhHHHHhhcccHHHHHHHHHHhc---------CCCCEEEEEEcCCcchhhhHHHhcCCcCccCceeccCCHHHHH
Confidence            9999999999999999999999999999         67999999887642                      1224567


Q ss_pred             HHHHHcCCEEEE
Q 009871          471 SAATQCGFRLVD  482 (523)
Q Consensus       471 ~~~~~~gf~~~~  482 (523)
                      ..++++||++.+
T Consensus       149 ~ll~~~G~~iv~  160 (161)
T PF13489_consen  149 QLLEQAGFEIVE  160 (161)
T ss_dssp             HHHHHTTEEEEE
T ss_pred             HHHHHCCCEEEE
Confidence            777888888764

...

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.32  E-value=1.5e-11  Score=130.05  Aligned_cols=123  Identities=22%  Similarity=0.273  Sum_probs=90.5

Q ss_pred             hcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEE
Q 009871           71 FSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIV  150 (523)
Q Consensus        71 ~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V  150 (523)
                      +...++.+|||||||+|..+..+++.. +++|+|+|+|+.|++.|+++......+++|.++|+...    ++++++||+|
T Consensus       262 ~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~----~~~~~~fD~I  336 (475)
T PLN02336        262 LDLKPGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKK----TYPDNSFDVI  336 (475)
T ss_pred             cCCCCCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccC----CCCCCCEEEE
Confidence            334567899999999999999988876 67899999999999999987654446799999999876    5677899999


Q ss_pred             EE-----------------ccccccceeeecceEEecCCeE------------EEeeCHHHHHHHHHhCCCcEEEEE
Q 009871          151 TM-----------------ERLTGKDQKISENFYVRGDGTR------------AFYFSNDFLTSLFKENGFDVEELG  198 (523)
Q Consensus       151 ~~-----------------~~~~~~~~~~~~~~~~~~~g~~------------~~~~~~~~l~~ll~~~Gf~~~~~~  198 (523)
                      +|                 .+.+++++.+.-..+...++..            ...++.+++.++++++||.++.+.
T Consensus       337 ~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~aGF~~i~~~  413 (475)
T PLN02336        337 YSRDTILHIQDKPALFRSFFKWLKPGGKVLISDYCRSPGTPSPEFAEYIKQRGYDLHDVQAYGQMLKDAGFDDVIAE  413 (475)
T ss_pred             EECCcccccCCHHHHHHHHHHHcCCCeEEEEEEeccCCCCCcHHHHHHHHhcCCCCCCHHHHHHHHHHCCCeeeeee
Confidence            99                 3344555554321111111100            123478889999999999987554

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.32  E-value=2.5e-11  Score=113.63  Aligned_cols=109  Identities=14%  Similarity=0.195  Sum_probs=89.2

Q ss_pred             CCCeEEEECCCccHHHHHHHhc-CCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCC
Q 009871          335 AGKKVLELGCGCGGICSMVAAG-SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG  413 (523)
Q Consensus       335 ~~~~VLElG~G~G~l~~~~a~~-~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~  413 (523)
                      +|.+|||+|||||-++..+++. +..+|+++|+|+.||+.+++.+..-+..    .+.+..   ++.+.+    ++++.+
T Consensus        51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~----~i~fv~---~dAe~L----Pf~D~s  119 (238)
T COG2226          51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQ----NVEFVV---GDAENL----PFPDNS  119 (238)
T ss_pred             CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCcc----ceEEEE---echhhC----CCCCCc
Confidence            7899999999999988888887 5569999999999999999988764432    144433   222222    578899


Q ss_pred             ccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecC
Q 009871          414 FEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ  463 (523)
Q Consensus       414 fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~  463 (523)
                      ||+|.++-.+.+..+++..|+.+.|+|         +|||++++....+.
T Consensus       120 FD~vt~~fglrnv~d~~~aL~E~~RVl---------KpgG~~~vle~~~p  160 (238)
T COG2226         120 FDAVTISFGLRNVTDIDKALKEMYRVL---------KPGGRLLVLEFSKP  160 (238)
T ss_pred             cCEEEeeehhhcCCCHHHHHHHHHHhh---------cCCeEEEEEEcCCC
Confidence            999999999999999999999999999         78999888777654

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=99.32  E-value=5.4e-11  Score=111.48  Aligned_cols=151  Identities=17%  Similarity=0.234  Sum_probs=94.2

Q ss_pred             HHHHHHHHhcccccc--cchhhhHHHHhhhhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccc
Q 009871           43 KYWDLFYKRHQDRFF--KDRHYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKD  120 (523)
Q Consensus        43 ~~Wd~~y~~~~~~f~--~~~~~l~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~  120 (523)
                      ++|+..|+.....|.  +....+...+.. +..+++.+|||+|||.|..+..|+++  +++|+|||+|+.+|+.+.+...
T Consensus         4 ~~Wd~rw~~~~~~~~~~~p~~~L~~~~~~-~~~~~~~rvL~~gCG~G~da~~LA~~--G~~V~avD~s~~Ai~~~~~~~~   80 (218)
T PRK13255          4 DFWHEKWAENQIGFHQEEVNPLLQKYWPA-LALPAGSRVLVPLCGKSLDMLWLAEQ--GHEVLGVELSELAVEQFFAENG   80 (218)
T ss_pred             hHHHHHHcCCCCCCCCCCCCHHHHHHHHh-hCCCCCCeEEEeCCCChHhHHHHHhC--CCeEEEEccCHHHHHHHHHHcC
Confidence            477777766543332  222333333322 23346789999999999999999998  7789999999999998754221


Q ss_pred             -------------cCCCcEEEEEeeccCCccCCCCCCCceeEEEE-------------------cccccccee-eecceE
Q 009871          121 -------------FTETRVSTFVCDLISDDLSRQISPSSIDIVTM-------------------ERLTGKDQK-ISENFY  167 (523)
Q Consensus       121 -------------~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~-------------------~~~~~~~~~-~~~~~~  167 (523)
                                   ....++++.++|+.++..   ...+.||.|+-                   .+++++++. +...+.
T Consensus        81 l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~---~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~  157 (218)
T PRK13255         81 LTPQTRQSGEFEHYQAGEITIYCGDFFALTA---ADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLD  157 (218)
T ss_pred             CCccccccccccccccCceEEEECcccCCCc---ccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEE
Confidence                         123578999999987621   12357999985                   333455532 111111


Q ss_pred             Ee--cCCeEEEeeCHHHHHHHHHhCCCcEEEEEeE
Q 009871          168 VR--GDGTRAFYFSNDFLTSLFKENGFDVEELGLC  200 (523)
Q Consensus       168 ~~--~~g~~~~~~~~~~l~~ll~~~Gf~~~~~~~~  200 (523)
                      ..  ..+...+.++.+++.+++.. +|.+..+...
T Consensus       158 ~~~~~~~gPp~~~~~~el~~~~~~-~~~i~~~~~~  191 (218)
T PRK13255        158 YPQEELAGPPFSVSDEEVEALYAG-CFEIELLERQ  191 (218)
T ss_pred             eCCccCCCCCCCCCHHHHHHHhcC-CceEEEeeec
Confidence            11  11222345689999999963 3777665543

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.32  E-value=7.4e-11  Score=112.31  Aligned_cols=167  Identities=16%  Similarity=0.225  Sum_probs=109.6

Q ss_pred             chhHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHH--HHHHhcCCCCCCCceEEEe
Q 009871          317 WESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLA--QNVTANLKPPFLAKLITKR  394 (523)
Q Consensus       317 W~~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~--~n~~~n~~~~~~~~v~~~~  394 (523)
                      |.|...-.+ +..+.....|++|||||||.|..+..++..|++.|+|+|.++..+-+.+  +++..+     ...+....
T Consensus        98 WrSd~KW~r-l~p~l~~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~-----~~~~~~lp  171 (315)
T PF08003_consen   98 WRSDWKWDR-LLPHLPDLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQ-----DPPVFELP  171 (315)
T ss_pred             ccccchHHH-HHhhhCCcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCC-----CccEEEcC
Confidence            444433333 2233334699999999999999999999999999999999876544322  222211     11222221


Q ss_pred             eecCCCCcchhhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee-------------
Q 009871          395 LEWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIF-------------  461 (523)
Q Consensus       395 ldw~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~-------------  461 (523)
                      +...      .+..  .+.||+|++.-|+||..+.-..++.++..|         ++||.+++-...             
T Consensus       172 lgvE------~Lp~--~~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L---------~~gGeLvLETlvi~g~~~~~L~P~~  234 (315)
T PF08003_consen  172 LGVE------DLPN--LGAFDTVFSMGVLYHRRSPLDHLKQLKDSL---------RPGGELVLETLVIDGDENTVLVPED  234 (315)
T ss_pred             cchh------hccc--cCCcCEEEEeeehhccCCHHHHHHHHHHhh---------CCCCEEEEEEeeecCCCceEEccCC
Confidence            2221      1111  468999999999999999999999999999         668888753322             


Q ss_pred             c-----C----CChhHHHHHHHHcCCEEEEEcCCCCCCCCcchhhcccccCCCCc
Q 009871          462 R-----Q----VDEPSMLSAATQCGFRLVDKWPSKNSASPSESIISSWFSENGHE  507 (523)
Q Consensus       462 r-----~----~~~~~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  507 (523)
                      |     +    ++...+...++++||+-.++.....-.. .++.--.|...+++.
T Consensus       235 rYa~m~nv~FiPs~~~L~~wl~r~gF~~v~~v~~~~Tt~-~EQR~T~Wm~~~SL~  288 (315)
T PF08003_consen  235 RYAKMRNVWFIPSVAALKNWLERAGFKDVRCVDVSPTTI-EEQRKTDWMDFQSLE  288 (315)
T ss_pred             cccCCCceEEeCCHHHHHHHHHHcCCceEEEecCccCCH-HHhccCCCcCcccHH
Confidence            1     1    2446778889999999888765533332 234444477665543

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=99.32  E-value=1.3e-11  Score=110.12  Aligned_cols=70  Identities=27%  Similarity=0.409  Sum_probs=60.9

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM  152 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~  152 (523)
                      .++.+|||+|||.|.++.+|.+. ++++.+|||++++.+..|.++.      +..+++|+.. .++ .|++++||+|++
T Consensus        12 ~pgsrVLDLGCGdG~LL~~L~~~-k~v~g~GvEid~~~v~~cv~rG------v~Viq~Dld~-gL~-~f~d~sFD~VIl   81 (193)
T PF07021_consen   12 EPGSRVLDLGCGDGELLAYLKDE-KQVDGYGVEIDPDNVAACVARG------VSVIQGDLDE-GLA-DFPDQSFDYVIL   81 (193)
T ss_pred             CCCCEEEecCCCchHHHHHHHHh-cCCeEEEEecCHHHHHHHHHcC------CCEEECCHHH-hHh-hCCCCCccEEeh
Confidence            36899999999999999888875 5889999999999999998863      6789999985 344 489999999999

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>TIGR00452 methyltransferase, putative

Probab=99.32  E-value=6.6e-12  Score=123.48  Aligned_cols=129  Identities=15%  Similarity=0.131  Sum_probs=88.8

Q ss_pred             cCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccc--cCCCcEEEEEeeccCCccCCCCCCCceeE
Q 009871           72 SGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKD--FTETRVSTFVCDLISDDLSRQISPSSIDI  149 (523)
Q Consensus        72 ~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~--~~~~~v~~~~~d~~~~~~~~~~~~~~fD~  149 (523)
                      ...++++|||||||+|.++..++..++ ..|+|||+|+.|+.+++....  ....++.+..+++.++    +. ..+||+
T Consensus       118 ~~~~g~~VLDvGCG~G~~~~~~~~~g~-~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~l----p~-~~~FD~  191 (314)
T TIGR00452       118 SPLKGRTILDVGCGSGYHMWRMLGHGA-KSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQL----HE-LYAFDT  191 (314)
T ss_pred             CCCCCCEEEEeccCCcHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHC----CC-CCCcCE
Confidence            446678999999999999999988864 369999999999987654221  1235678888888766    33 348999


Q ss_pred             EEE-----------------ccccccceeeecc-eEEecC--------Ce------EEEeeCHHHHHHHHHhCCCcEEEE
Q 009871          150 VTM-----------------ERLTGKDQKISEN-FYVRGD--------GT------RAFYFSNDFLTSLFKENGFDVEEL  197 (523)
Q Consensus       150 V~~-----------------~~~~~~~~~~~~~-~~~~~~--------g~------~~~~~~~~~l~~ll~~~Gf~~~~~  197 (523)
                      |+|                 .+.+++++.+.-. ....++        +.      ..+.++.+++..+++++||..+++
T Consensus       192 V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv~flpS~~~L~~~L~~aGF~~V~i  271 (314)
T TIGR00452       192 VFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKNVYFIPSVSALKNWLEKVGFENFRI  271 (314)
T ss_pred             EEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHhccccccCCCHHHHHHHHHHCCCeEEEE
Confidence            999                 3445555554321 111111        11      123348999999999999999888


Q ss_pred             EeEeeeeee
Q 009871          198 GLCCKQVEN  206 (523)
Q Consensus       198 ~~~~~~~~~  206 (523)
                      .........
T Consensus       272 ~~~~~tt~~  280 (314)
T TIGR00452       272 LDVLKTTPE  280 (314)
T ss_pred             EeccCCCHH
Confidence            765554443

Known examples to date are restricted to the proteobacteria.

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=99.31  E-value=1.6e-11  Score=109.73  Aligned_cols=125  Identities=14%  Similarity=0.152  Sum_probs=87.9

Q ss_pred             CCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCc
Q 009871          335 AGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGF  414 (523)
Q Consensus       335 ~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~f  414 (523)
                      +-.++||+|||.|.++..+|.++ .+++++|+++.+++.|++++..      ...|.+...+..+.        .++++|
T Consensus        43 ry~~alEvGCs~G~lT~~LA~rC-d~LlavDis~~Al~~Ar~Rl~~------~~~V~~~~~dvp~~--------~P~~~F  107 (201)
T PF05401_consen   43 RYRRALEVGCSIGVLTERLAPRC-DRLLAVDISPRALARARERLAG------LPHVEWIQADVPEF--------WPEGRF  107 (201)
T ss_dssp             SEEEEEEE--TTSHHHHHHGGGE-EEEEEEES-HHHHHHHHHHTTT-------SSEEEEES-TTT-----------SS-E
T ss_pred             ccceeEecCCCccHHHHHHHHhh-CceEEEeCCHHHHHHHHHhcCC------CCCeEEEECcCCCC--------CCCCCe
Confidence            33589999999999999988884 6899999999999999987754      14677777766543        356899


Q ss_pred             cEEEEccccCCCCCh---HHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec--------CCChhHHHHHHHHcCCEEEEE
Q 009871          415 EVILGTDVSYIPEAI---LPLFATAKELTASSNKSLREDQQPAFILCHIFR--------QVDEPSMLSAATQCGFRLVDK  483 (523)
Q Consensus       415 D~Ii~~d~~y~~~~~---~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r--------~~~~~~~~~~~~~~gf~~~~~  483 (523)
                      |+|+.+.++|+-...   ..+++.+...|         .|||.+++++...        ..+.+.+.+.+.+.=-+++++
T Consensus       108 DLIV~SEVlYYL~~~~~L~~~l~~l~~~L---------~pgG~LV~g~~rd~~c~~wgh~~ga~tv~~~~~~~~~~~~~~  178 (201)
T PF05401_consen  108 DLIVLSEVLYYLDDAEDLRAALDRLVAAL---------APGGHLVFGHARDANCRRWGHAAGAETVLEMLQEHLTEVERV  178 (201)
T ss_dssp             EEEEEES-GGGSSSHHHHHHHHHHHHHTE---------EEEEEEEEEEE-HHHHHHTT-S--HHHHHHHHHHHSEEEEEE
T ss_pred             eEEEEehHhHcCCCHHHHHHHHHHHHHHh---------CCCCEEEEEEecCCcccccCcccchHHHHHHHHHHhhheeEE
Confidence            999999999997654   45666666677         6799999998762        134466777777775666655

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=99.31  E-value=6.5e-11  Score=117.35  Aligned_cols=128  Identities=13%  Similarity=-0.026  Sum_probs=96.8

Q ss_pred             CCCeEEEECCCccHHHHHHHhc-CCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCC
Q 009871          335 AGKKVLELGCGCGGICSMVAAG-SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG  413 (523)
Q Consensus       335 ~~~~VLElG~G~G~l~~~~a~~-~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~  413 (523)
                      ++.+|||||||+|.++..+++. +..+|+++|.++.|++.++++...+       ++.+...|..+.       ++..++
T Consensus       113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~-------~i~~i~gD~e~l-------p~~~~s  178 (340)
T PLN02490        113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK-------ECKIIEGDAEDL-------PFPTDY  178 (340)
T ss_pred             CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhcc-------CCeEEeccHHhC-------CCCCCc
Confidence            5679999999999877777665 3468999999999999999876532       234444333221       234568


Q ss_pred             ccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec---------------CCChhHHHHHHHHcCC
Q 009871          414 FEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFR---------------QVDEPSMLSAATQCGF  478 (523)
Q Consensus       414 fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r---------------~~~~~~~~~~~~~~gf  478 (523)
                      ||+|+++.++.+......+++.+.++|         +|||.+++.....               ....+++.+.+++.||
T Consensus       179 FDvVIs~~~L~~~~d~~~~L~e~~rvL---------kPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF  249 (340)
T PLN02490        179 ADRYVSAGSIEYWPDPQRGIKEAYRVL---------KIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGF  249 (340)
T ss_pred             eeEEEEcChhhhCCCHHHHHHHHHHhc---------CCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCC
Confidence            999999999988888899999999999         7799987754321               1234677889999999


Q ss_pred             EEEEEcC
Q 009871          479 RLVDKWP  485 (523)
Q Consensus       479 ~~~~~~~  485 (523)
                      +..++..
T Consensus       250 ~~V~i~~  256 (340)
T PLN02490        250 KDVKLKR  256 (340)
T ss_pred             eEEEEEE
Confidence            9877654

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=99.31  E-value=1.3e-10  Score=111.55  Aligned_cols=127  Identities=14%  Similarity=0.122  Sum_probs=92.0

Q ss_pred             CCeEEEECCCccHHHHHHHhcC-CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCc
Q 009871          336 GKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGF  414 (523)
Q Consensus       336 ~~~VLElG~G~G~l~~~~a~~~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~f  414 (523)
                      +.+|||||||+|.++..+++.. ..+|+++|+|+.+++.+++|+..|+.       .+...|+.+.  +.   ....++|
T Consensus        87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~-------~~~~~D~~~~--l~---~~~~~~f  154 (251)
T TIGR03704        87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGG-------TVHEGDLYDA--LP---TALRGRV  154 (251)
T ss_pred             CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-------EEEEeechhh--cc---hhcCCCE
Confidence            4589999999999988888763 45899999999999999999998752       3444555432  10   1113479


Q ss_pred             cEEEEccccCCCC--------------------------ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhH
Q 009871          415 EVILGTDVSYIPE--------------------------AILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPS  468 (523)
Q Consensus       415 D~Ii~~d~~y~~~--------------------------~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~  468 (523)
                      |+|+++.......                          .+..+++.+.++|         +|+|.+++.+...  ....
T Consensus       155 DlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L---------~~gG~l~l~~~~~--~~~~  223 (251)
T TIGR03704       155 DILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWL---------APGGHLLVETSER--QAPL  223 (251)
T ss_pred             eEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhc---------CCCCEEEEEECcc--hHHH
Confidence            9999975433111                          1347777778888         6799999887543  3457


Q ss_pred             HHHHHHHcCCEEEEEcC
Q 009871          469 MLSAATQCGFRLVDKWP  485 (523)
Q Consensus       469 ~~~~~~~~gf~~~~~~~  485 (523)
                      +.+.++++||+......
T Consensus       224 v~~~l~~~g~~~~~~~~  240 (251)
T TIGR03704       224 AVEAFARAGLIARVASS  240 (251)
T ss_pred             HHHHHHHCCCCceeeEc
Confidence            88999999998876654

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>TIGR00477 tehB tellurite resistance protein TehB

Probab=99.31  E-value=9.6e-12  Score=115.08  Aligned_cols=120  Identities=18%  Similarity=0.189  Sum_probs=81.1

Q ss_pred             hhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeE
Q 009871           70 YFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDI  149 (523)
Q Consensus        70 ~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~  149 (523)
                      .+...++.+|||+|||+|.++..++++  +.+|+|+|+|+.|++.++++....+.++.+.++|+...    ++ +++||+
T Consensus        25 ~~~~~~~~~vLDiGcG~G~~a~~la~~--g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~----~~-~~~fD~   97 (195)
T TIGR00477        25 AVKTVAPCKTLDLGCGQGRNSLYLSLA--GYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAA----AL-NEDYDF   97 (195)
T ss_pred             HhccCCCCcEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhc----cc-cCCCCE
Confidence            333345689999999999999999987  56899999999999999887644334577788887644    33 357999


Q ss_pred             EEE-------------------ccccccceeeecceEEe----cCC-eEEEeeCHHHHHHHHHhCCCcEEEEE
Q 009871          150 VTM-------------------ERLTGKDQKISENFYVR----GDG-TRAFYFSNDFLTSLFKENGFDVEELG  198 (523)
Q Consensus       150 V~~-------------------~~~~~~~~~~~~~~~~~----~~g-~~~~~~~~~~l~~ll~~~Gf~~~~~~  198 (523)
                      |++                   .+.+++++.+.-.....    +.| ...+.++.+++.++|.  +|+++...
T Consensus        98 I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~~~~~~~~~~~~~~el~~~f~--~~~~~~~~  168 (195)
T TIGR00477        98 IFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVAAMDTADYPCHMPFSFTFKEDELRQYYA--DWELLKYN  168 (195)
T ss_pred             EEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEEecccCCCCCCCCcCccCCHHHHHHHhC--CCeEEEee
Confidence            988                   22234444311100111    111 1123468899999997  68877665

Part of a tellurite-reducing operon tehA and tehB

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=99.31  E-value=9e-11  Score=112.07  Aligned_cols=162  Identities=14%  Similarity=0.175  Sum_probs=116.7

Q ss_pred             HHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcc
Q 009871          324 AAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHI  403 (523)
Q Consensus       324 a~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~  403 (523)
                      .+++.......++.+|||||||+|.++..+++.+ .+|+++|+++.+++.+++|+..++.     .+.+...++.+.   
T Consensus        37 ~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~iD~s~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~---  107 (233)
T PRK05134         37 LNYIREHAGGLFGKRVLDVGCGGGILSESMARLG-ADVTGIDASEENIEVARLHALESGL-----KIDYRQTTAEEL---  107 (233)
T ss_pred             HHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHcC-CeEEEEcCCHHHHHHHHHHHHHcCC-----ceEEEecCHHHh---
Confidence            4566555445678899999999998887777765 5799999999999999998876543     234444333321   


Q ss_pred             hhhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecC--------------------
Q 009871          404 EAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ--------------------  463 (523)
Q Consensus       404 ~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~--------------------  463 (523)
                         .....++||+|+++.++.+......+++.+.++|         +|+|.++++...+.                    
T Consensus       108 ---~~~~~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L---------~~gG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (233)
T PRK05134        108 ---AAEHPGQFDVVTCMEMLEHVPDPASFVRACAKLV---------KPGGLVFFSTLNRNLKSYLLAIVGAEYVLRMLPK  175 (233)
T ss_pred             ---hhhcCCCccEEEEhhHhhccCCHHHHHHHHHHHc---------CCCcEEEEEecCCChHHHHHHHhhHHHHhhhcCc
Confidence               1113468999999999998888999999999999         67999988754221                    


Q ss_pred             --------CChhHHHHHHHHcCCEEEEEcCCCCCCCCcchhhcccccCCCCccccC
Q 009871          464 --------VDEPSMLSAATQCGFRLVDKWPSKNSASPSESIISSWFSENGHEVYLP  511 (523)
Q Consensus       464 --------~~~~~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  511 (523)
                              .+..++.+.+++.||++.......     .+.+...|.-....++.|+
T Consensus       176 ~~~~~~~~~~~~~~~~~l~~~Gf~~v~~~~~~-----~~~~~~~~~~~~~~~~~~~  226 (233)
T PRK05134        176 GTHDYKKFIKPSELAAWLRQAGLEVQDITGLH-----YNPLTNRWKLSDDVDVNYM  226 (233)
T ss_pred             ccCchhhcCCHHHHHHHHHHCCCeEeeeeeEE-----echhhcceeeccCccchhh
Confidence                    123457778899999988774311     2245666766666666664

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=99.31  E-value=4.7e-11  Score=119.42  Aligned_cols=134  Identities=17%  Similarity=0.188  Sum_probs=95.0

Q ss_pred             eEEEEEecccccccCCCcccccchhHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCC-CEEEEEcCChHHHHH
Q 009871          295 SFKIEVLSKEYQHTCRSTGLMLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSA-DLVVATDGDSIALDL  373 (523)
Q Consensus       295 ~~~i~~~~~~~~~~~~~~G~~~W~~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~-~~V~~~D~~~~~l~~  373 (523)
                      .+.+...+++++...-+.|      +.+|.+.+..    ....+|||||||+|.++..++++.+ .+|+++|+|+.|++.
T Consensus       166 ~l~i~~~pgvFs~~~lD~g------t~lLl~~l~~----~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~  235 (342)
T PRK09489        166 GLTVKTLPGVFSRDGLDVG------SQLLLSTLTP----HTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALES  235 (342)
T ss_pred             CEEEEeCCCCCCCCCCCHH------HHHHHHhccc----cCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHH
Confidence            3667777777765444444      3344444322    2345899999999999988888754 589999999999999


Q ss_pred             HHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCccEEEEccccCC-----CCChHHHHHHHHHHhhccCCCCC
Q 009871          374 LAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYI-----PEAILPLFATAKELTASSNKSLR  448 (523)
Q Consensus       374 ~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~fD~Ii~~d~~y~-----~~~~~~l~~~l~~ll~~~~~~~~  448 (523)
                      ++.|++.|++.   .  .+...|...        . ..++||+|+++..++.     ......+++.+.+.|        
T Consensus       236 A~~nl~~n~l~---~--~~~~~D~~~--------~-~~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~L--------  293 (342)
T PRK09489        236 SRATLAANGLE---G--EVFASNVFS--------D-IKGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHL--------  293 (342)
T ss_pred             HHHHHHHcCCC---C--EEEEccccc--------c-cCCCccEEEECCCccCCccccHHHHHHHHHHHHHhc--------
Confidence            99999998764   1  222222111        1 1468999999987664     234688999999999        


Q ss_pred             CCCCcEEEEEEee
Q 009871          449 EDQQPAFILCHIF  461 (523)
Q Consensus       449 ~~~~g~~~l~~~~  461 (523)
                       +|||.+++....
T Consensus       294 -kpgG~L~iVan~  305 (342)
T PRK09489        294 -NSGGELRIVANA  305 (342)
T ss_pred             -CcCCEEEEEEeC
Confidence             779999887654

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=99.30  E-value=7.6e-11  Score=112.91  Aligned_cols=108  Identities=14%  Similarity=0.083  Sum_probs=86.2

Q ss_pred             CCCCeEEEECCCccHHHHHHHhcCC--CEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcC
Q 009871          334 VAGKKVLELGCGCGGICSMVAAGSA--DLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENN  411 (523)
Q Consensus       334 ~~~~~VLElG~G~G~l~~~~a~~~~--~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~  411 (523)
                      .++.+|||+|||+|.++..++..++  .+|+++|+++.+++.+++++..++..   ..+.+...+..+.       ....
T Consensus        50 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~---~~~~~~~~d~~~~-------~~~~  119 (239)
T PRK00216         50 RPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLS---GNVEFVQGDAEAL-------PFPD  119 (239)
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccc---cCeEEEecccccC-------CCCC
Confidence            3678999999999988888888764  79999999999999999998765443   3456665555432       1234


Q ss_pred             CCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEe
Q 009871          412 EGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHI  460 (523)
Q Consensus       412 ~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~  460 (523)
                      +.||+|+++.++.+......+++.+.++|         +++|.++++..
T Consensus       120 ~~~D~I~~~~~l~~~~~~~~~l~~~~~~L---------~~gG~li~~~~  159 (239)
T PRK00216        120 NSFDAVTIAFGLRNVPDIDKALREMYRVL---------KPGGRLVILEF  159 (239)
T ss_pred             CCccEEEEecccccCCCHHHHHHHHHHhc---------cCCcEEEEEEe
Confidence            68999999988888889999999999999         67998887643

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=99.30  E-value=2.5e-11  Score=111.70  Aligned_cols=125  Identities=14%  Similarity=0.187  Sum_probs=89.3

Q ss_pred             hhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC-CCcEEEEEeeccCCccCCCCCCCcee
Q 009871           70 YFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT-ETRVSTFVCDLISDDLSRQISPSSID  148 (523)
Q Consensus        70 ~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~-~~~v~~~~~d~~~~~~~~~~~~~~fD  148 (523)
                      .+...++.+|||+|||+|.++..+++++|+.+|+|+|+|+.|++.|+++.... ..+++++++|+..     ++ +++||
T Consensus        26 ~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~-----~~-~~~~D   99 (187)
T PRK08287         26 KLELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPI-----EL-PGKAD   99 (187)
T ss_pred             hcCCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchh-----hc-CcCCC
Confidence            34445788999999999999999999988889999999999999999876432 2468888888742     22 35799


Q ss_pred             EEEEccccccceeeec--ceEEecCCeEEEee----CHHHHHHHHHhCCCcEEEEEeE
Q 009871          149 IVTMERLTGKDQKISE--NFYVRGDGTRAFYF----SNDFLTSLFKENGFDVEELGLC  200 (523)
Q Consensus       149 ~V~~~~~~~~~~~~~~--~~~~~~~g~~~~~~----~~~~l~~ll~~~Gf~~~~~~~~  200 (523)
                      +|++.........+..  ...++++|.+++..    +.+++.+++++.||..+++...
T Consensus       100 ~v~~~~~~~~~~~~l~~~~~~Lk~gG~lv~~~~~~~~~~~~~~~l~~~g~~~~~~~~~  157 (187)
T PRK08287        100 AIFIGGSGGNLTAIIDWSLAHLHPGGRLVLTFILLENLHSALAHLEKCGVSELDCVQL  157 (187)
T ss_pred             EEEECCCccCHHHHHHHHHHhcCCCeEEEEEEecHhhHHHHHHHHHHCCCCcceEEEE
Confidence            9998211000000000  12578888876533    5667888999999987665444

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=99.29  E-value=1.1e-11  Score=110.00  Aligned_cols=76  Identities=17%  Similarity=0.346  Sum_probs=62.6

Q ss_pred             CCCCeEEEECCCccccHHHHH-hhCCCCEEEEEeCCHHHHHHHHhccccC-CCcEEEEEeeccCCccCCCCCCCceeEEE
Q 009871           74 AGRKDVLEVGCGAGNTIFPLI-AAYPDVFVYACDFSPRAVNLVMTHKDFT-ETRVSTFVCDLISDDLSRQISPSSIDIVT  151 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~-~~~~~~~v~gvD~S~~~l~~a~~~~~~~-~~~v~~~~~d~~~~~~~~~~~~~~fD~V~  151 (523)
                      .++.+|||+|||+|.++..++ +.+++.+|+|+|+|++|++.|+++.... ..+++|.++|+.++  +..++ ++||+|+
T Consensus         2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l--~~~~~-~~~D~I~   78 (152)
T PF13847_consen    2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDL--PQELE-EKFDIII   78 (152)
T ss_dssp             TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCG--CGCSS-TTEEEEE
T ss_pred             CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhcc--ccccC-CCeeEEE
Confidence            357899999999999999999 4578899999999999999999976433 34899999999975  21134 7899999


Q ss_pred             E
Q 009871          152 M  152 (523)
Q Consensus       152 ~  152 (523)
                      +
T Consensus        79 ~   79 (152)
T PF13847_consen   79 S   79 (152)
T ss_dssp             E
T ss_pred             E
Confidence            9

...

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=99.28  E-value=1.9e-11  Score=119.57  Aligned_cols=123  Identities=17%  Similarity=0.201  Sum_probs=87.1

Q ss_pred             CCCCCeEEEECCCccccHHHHHhh-CCCCEEEEEeCCHHHHHHHHhccccC-CCcEEEEEeeccCCccCCCCCCCceeEE
Q 009871           73 GAGRKDVLEVGCGAGNTIFPLIAA-YPDVFVYACDFSPRAVNLVMTHKDFT-ETRVSTFVCDLISDDLSRQISPSSIDIV  150 (523)
Q Consensus        73 ~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~v~gvD~S~~~l~~a~~~~~~~-~~~v~~~~~d~~~~~~~~~~~~~~fD~V  150 (523)
                      ..++.+|||||||+|..+..+++. .+..+|+|+|+|+.|++.|+++.... ..++++.++|+.++    ++++++||+|
T Consensus        75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l----~~~~~~fD~V  150 (272)
T PRK11873         75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEAL----PVADNSVDVI  150 (272)
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhC----CCCCCceeEE
Confidence            357889999999999988777766 45678999999999999999875332 35789999999877    5677899999


Q ss_pred             EEcc---ccccc-eeeec-ceEEecCCeEEE--------------------------eeCHHHHHHHHHhCCCcEEEEEe
Q 009871          151 TMER---LTGKD-QKISE-NFYVRGDGTRAF--------------------------YFSNDFLTSLFKENGFDVEELGL  199 (523)
Q Consensus       151 ~~~~---~~~~~-~~~~~-~~~~~~~g~~~~--------------------------~~~~~~l~~ll~~~Gf~~~~~~~  199 (523)
                      ++..   +.... ..+.. ...++++|.+.+                          .++.+++.++|+++||..+++..
T Consensus       151 i~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~aGf~~v~i~~  230 (272)
T PRK11873        151 ISNCVINLSPDKERVFKEAFRVLKPGGRFAISDVVLRGELPEEIRNDAELYAGCVAGALQEEEYLAMLAEAGFVDITIQP  230 (272)
T ss_pred             EEcCcccCCCCHHHHHHHHHHHcCCCcEEEEEEeeccCCCCHHHHHhHHHHhccccCCCCHHHHHHHHHHCCCCceEEEe
Confidence            9811   00000 00000 113445554433                          23678899999999999876643

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=99.28  E-value=6.1e-12  Score=117.00  Aligned_cols=124  Identities=15%  Similarity=0.186  Sum_probs=88.4

Q ss_pred             hhhhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC-CCcEEEEEeec-cCCccCCCCCCC
Q 009871           68 GRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT-ETRVSTFVCDL-ISDDLSRQISPS  145 (523)
Q Consensus        68 ~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~-~~~v~~~~~d~-~~~~~~~~~~~~  145 (523)
                      .+++. .++.+|||+|||+|..+..+++.+|+.+|+|+|+|+.|++.|+++.... ..+++++++|+ ..+  +..++++
T Consensus        34 ~~~~~-~~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l--~~~~~~~  110 (202)
T PRK00121         34 AELFG-NDAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVL--LDMFPDG  110 (202)
T ss_pred             HHHcC-CCCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHH--HHHcCcc
Confidence            34444 3678999999999999999999888889999999999999999876433 25799999999 544  1125678


Q ss_pred             ceeEEEEc---ccccc---------ceeeec-ceEEecCCeEEEee----CHHHHHHHHHhCCCcE
Q 009871          146 SIDIVTME---RLTGK---------DQKISE-NFYVRGDGTRAFYF----SNDFLTSLFKENGFDV  194 (523)
Q Consensus       146 ~fD~V~~~---~~~~~---------~~~~~~-~~~~~~~g~~~~~~----~~~~l~~ll~~~Gf~~  194 (523)
                      +||+|++.   .+...         ...+.. ...++++|.+.+..    ...++.+.+++.|+..
T Consensus       111 ~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~g~~~  176 (202)
T PRK00121        111 SLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYAEYMLEVLSAEGGFL  176 (202)
T ss_pred             ccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHhCcccc
Confidence            99999981   11010         000111 22688899887754    2456777788888754

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.28  E-value=2.4e-10  Score=112.88  Aligned_cols=167  Identities=14%  Similarity=0.069  Sum_probs=108.7

Q ss_pred             ceEEEEEEcCceEEEEEecccccccCCCcccccchhHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcC-CCEEE
Q 009871          284 NEMIEVNLRDRSFKIEVLSKEYQHTCRSTGLMLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGS-ADLVV  362 (523)
Q Consensus       284 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~G~~~W~~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~-~~~V~  362 (523)
                      +-+-...|.|.++.+.  ++        +-.+..+...++...+..........+|||+|||+|.++..++... ..+|+
T Consensus        92 yi~g~~~F~g~~f~v~--~~--------vlipr~~te~lv~~~l~~~~~~~~~~~VLDlG~GsG~iai~la~~~p~~~V~  161 (307)
T PRK11805         92 YLTNEAWFCGLEFYVD--ER--------VLVPRSPIAELIEDGFAPWLEDPPVTRILDLCTGSGCIAIACAYAFPDAEVD  161 (307)
T ss_pred             HHcCcceEcCcEEEEC--CC--------CcCCCCchHHHHHHHHHHHhccCCCCEEEEEechhhHHHHHHHHHCCCCEEE
Confidence            3444456667666664  22        2223444455555544322111123689999999999988888775 45899


Q ss_pred             EEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCccEEEEccccC--------------CCC-
Q 009871          363 ATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSY--------------IPE-  427 (523)
Q Consensus       363 ~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~fD~Ii~~d~~y--------------~~~-  427 (523)
                      ++|+|+.+++.|++|+..++..   .++.+...|+.+.        ++..+||+|+++....              .+. 
T Consensus       162 avDis~~al~~A~~n~~~~~l~---~~i~~~~~D~~~~--------l~~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~  230 (307)
T PRK11805        162 AVDISPDALAVAEINIERHGLE---DRVTLIESDLFAA--------LPGRRYDLIVSNPPYVDAEDMADLPAEYRHEPEL  230 (307)
T ss_pred             EEeCCHHHHHHHHHHHHHhCCC---CcEEEEECchhhh--------CCCCCccEEEECCCCCCccchhhcCHhhccCccc
Confidence            9999999999999999998764   4577776665432        2235799999974321              111 


Q ss_pred             ----------ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhHHHHHHHHcCCEEEEE
Q 009871          428 ----------AILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLVDK  483 (523)
Q Consensus       428 ----------~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~~~~~~~~gf~~~~~  483 (523)
                                .+..+++.+.++|         +|||.+++-...   +...+.+.+.+.||.....
T Consensus       231 AL~gg~dGl~~~~~i~~~a~~~L---------~pgG~l~~E~g~---~~~~~~~~~~~~~~~~~~~  284 (307)
T PRK11805        231 ALAAGDDGLDLVRRILAEAPDYL---------TEDGVLVVEVGN---SRVHLEEAYPDVPFTWLEF  284 (307)
T ss_pred             eeeCCCchHHHHHHHHHHHHHhc---------CCCCEEEEEECc---CHHHHHHHHhhCCCEEEEe
Confidence                      2356788888888         679998886543   2334666677777765444

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=99.28  E-value=2e-11  Score=116.34  Aligned_cols=111  Identities=20%  Similarity=0.255  Sum_probs=74.2

Q ss_pred             HHHHHHHHhhHHHHHHHHhccccccc-----chhhhHHHHhhhhc---CCCCCeEEEECCCccccHHHHHhhCCCCEEEE
Q 009871           33 WRDKYEREAKKYWDLFYKRHQDRFFK-----DRHYLDKEWGRYFS---GAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYA  104 (523)
Q Consensus        33 ~~~~~~~~~~~~Wd~~y~~~~~~f~~-----~~~~l~~~~~~~~~---~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~g  104 (523)
                      -...|+......|+.+|....-....     ........+..+++   ..++.+|||||||+|..+..+++..  ..|+|
T Consensus        13 v~~~~~~~~~~~w~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vLDvGcG~G~~~~~l~~~~--~~v~~   90 (230)
T PRK07580         13 VRTYFNRTGFDRWARIYSDAPVSKVRATVRAGHQRMRDTVLSWLPADGDLTGLRILDAGCGVGSLSIPLARRG--AKVVA   90 (230)
T ss_pred             hhHHHhhhccchHHHhhCcCchhHHHHHhcchHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHcC--CEEEE
Confidence            34556666667788877663211110     00111112222232   2457899999999999999999874  56999


Q ss_pred             EeCCHHHHHHHHhccccCC--CcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871          105 CDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQISPSSIDIVTM  152 (523)
Q Consensus       105 vD~S~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~V~~  152 (523)
                      +|+|+.|++.|+++.....  .++.+.++|+.       ..+++||+|++
T Consensus        91 ~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~-------~~~~~fD~v~~  133 (230)
T PRK07580         91 SDISPQMVEEARERAPEAGLAGNITFEVGDLE-------SLLGRFDTVVC  133 (230)
T ss_pred             EECCHHHHHHHHHHHHhcCCccCcEEEEcCch-------hccCCcCEEEE
Confidence            9999999999998754322  47889998853       23578999998

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=99.27  E-value=1.2e-10  Score=112.61  Aligned_cols=74  Identities=19%  Similarity=0.193  Sum_probs=61.2

Q ss_pred             hhhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCcee
Q 009871           69 RYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSID  148 (523)
Q Consensus        69 ~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD  148 (523)
                      +.++..+..+|||+|||+|.++..+++.  +.+|+|+|+|+.|++.|+++..    ...++++|+..+    ++++++||
T Consensus        36 ~~l~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~~D~s~~~l~~a~~~~~----~~~~~~~d~~~~----~~~~~~fD  105 (251)
T PRK10258         36 AMLPQRKFTHVLDAGCGPGWMSRYWRER--GSQVTALDLSPPMLAQARQKDA----ADHYLAGDIESL----PLATATFD  105 (251)
T ss_pred             HhcCccCCCeEEEeeCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhCC----CCCEEEcCcccC----cCCCCcEE
Confidence            3344345789999999999999888876  5679999999999999998742    246889999877    67788999


Q ss_pred             EEEE
Q 009871          149 IVTM  152 (523)
Q Consensus       149 ~V~~  152 (523)
                      +|++
T Consensus       106 ~V~s  109 (251)
T PRK10258        106 LAWS  109 (251)
T ss_pred             EEEE
Confidence            9999

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=99.27  E-value=1.4e-11  Score=118.52  Aligned_cols=73  Identities=21%  Similarity=0.284  Sum_probs=60.7

Q ss_pred             CCCCeEEEECCCccccHHHHHhh--CCCCEEEEEeCCHHHHHHHHhccccC--CCcEEEEEeeccCCccCCCCCCCceeE
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAA--YPDVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISDDLSRQISPSSIDI  149 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~--~~~~~v~gvD~S~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~~~~~~~~~~fD~  149 (523)
                      .++.+|||||||+|..+..+++.  .|+++|+|+|+|+.|++.|+++....  ..+++++++|+.+.    ++  ..+|+
T Consensus        55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~----~~--~~~D~  128 (247)
T PRK15451         55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDI----AI--ENASM  128 (247)
T ss_pred             CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhC----CC--CCCCE
Confidence            46789999999999999988884  57899999999999999999986432  34799999999865    33  34899


Q ss_pred             EEE
Q 009871          150 VTM  152 (523)
Q Consensus       150 V~~  152 (523)
                      |++
T Consensus       129 vv~  131 (247)
T PRK15451        129 VVL  131 (247)
T ss_pred             Eeh
Confidence            988

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=99.27  E-value=1.2e-10  Score=110.19  Aligned_cols=138  Identities=16%  Similarity=0.194  Sum_probs=94.5

Q ss_pred             HHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCc
Q 009871          323 MAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDH  402 (523)
Q Consensus       323 la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~  402 (523)
                      +.+++..  ...++.+|||+|||+|.++..++..+ .+|+++|+|+.|+..+++++..++..   .++.+...|+.+.  
T Consensus        45 ~~~~l~~--~~~~~~~vLDiGcG~G~~~~~la~~~-~~v~gvD~s~~~i~~a~~~~~~~~~~---~~i~~~~~d~~~~--  116 (219)
T TIGR02021        45 LLDWLPK--DPLKGKRVLDAGCGTGLLSIELAKRG-AIVKAVDISEQMVQMARNRAQGRDVA---GNVEFEVNDLLSL--  116 (219)
T ss_pred             HHHHHhc--CCCCCCEEEEEeCCCCHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcCCC---CceEEEECChhhC--
Confidence            4445532  13578899999999998888887764 48999999999999999998876543   3456655544332  


Q ss_pred             chhhhhhcCCCccEEEEccccCCC--CChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee-------------------
Q 009871          403 IEAIKEENNEGFEVILGTDVSYIP--EAILPLFATAKELTASSNKSLREDQQPAFILCHIF-------------------  461 (523)
Q Consensus       403 ~~~~~~~~~~~fD~Ii~~d~~y~~--~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~-------------------  461 (523)
                              +.+||+|++.+++++.  .....+++.+.+++         ++++.+.+....                   
T Consensus       117 --------~~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~---------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  179 (219)
T TIGR02021       117 --------CGEFDIVVCMDVLIHYPASDMAKALGHLASLT---------KERVIFTFAPKTAWLAFLKMIGELFPGSSRA  179 (219)
T ss_pred             --------CCCcCEEEEhhHHHhCCHHHHHHHHHHHHHHh---------CCCEEEEECCCchHHHHHHHHHhhCcCcccc
Confidence                    2589999999998663  34566777777777         334333321110                   


Q ss_pred             ---cCCChhHHHHHHHHcCCEEEEEcC
Q 009871          462 ---RQVDEPSMLSAATQCGFRLVDKWP  485 (523)
Q Consensus       462 ---r~~~~~~~~~~~~~~gf~~~~~~~  485 (523)
                         +..+.+++.+.+++.||++.....
T Consensus       180 ~~~~~~~~~~~~~~l~~~Gf~v~~~~~  206 (219)
T TIGR02021       180 TSAYLHPMTDLERALGELGWKIVREGL  206 (219)
T ss_pred             cceEEecHHHHHHHHHHcCceeeeeec
Confidence               011345677888899999887743

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=99.26  E-value=7.5e-11  Score=106.84  Aligned_cols=122  Identities=20%  Similarity=0.260  Sum_probs=78.3

Q ss_pred             hcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEE
Q 009871           71 FSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIV  150 (523)
Q Consensus        71 ~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V  150 (523)
                      ++..+++++||+|||.|+.+.+|+++  +..|+|+|+|+.+++.+++.+......++..+.|+.+.    .+ ++.||+|
T Consensus        26 ~~~~~~g~~LDlgcG~GRNalyLA~~--G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~----~~-~~~yD~I   98 (192)
T PF03848_consen   26 VPLLKPGKALDLGCGEGRNALYLASQ--GFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDF----DF-PEEYDFI   98 (192)
T ss_dssp             CTTS-SSEEEEES-TTSHHHHHHHHT--T-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCB----S--TTTEEEE
T ss_pred             HhhcCCCcEEEcCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhc----cc-cCCcCEE
Confidence            34456789999999999999999999  77799999999999998887655566799999999865    33 3679999


Q ss_pred             EE---cccccccee--eecc--eEEecCCe-----------------EEEeeCHHHHHHHHHhCCCcEEEEEeEe
Q 009871          151 TM---ERLTGKDQK--ISEN--FYVRGDGT-----------------RAFYFSNDFLTSLFKENGFDVEELGLCC  201 (523)
Q Consensus       151 ~~---~~~~~~~~~--~~~~--~~~~~~g~-----------------~~~~~~~~~l~~ll~~~Gf~~~~~~~~~  201 (523)
                      ++   ..|+.+...  +..+  -.++++|.                 +.+.+.+.|+.+.+.  ||++++.....
T Consensus        99 ~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~~~~~d~p~~~~~~f~~~~~EL~~~y~--dW~il~y~E~~  171 (192)
T PF03848_consen   99 VSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTFMETPDYPCPSPFPFLLKPGELREYYA--DWEILKYNEDV  171 (192)
T ss_dssp             EEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEEB--SSS--SS--S--B-TTHHHHHTT--TSEEEEEEEEE
T ss_pred             EEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEecccCCCCCCCCCCcccCHHHHHHHhC--CCeEEEEEccc
Confidence            97   122111100  0000  01222222                 224457789999997  89987754433

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=99.26  E-value=9.4e-11  Score=113.25  Aligned_cols=101  Identities=13%  Similarity=0.028  Sum_probs=78.5

Q ss_pred             CCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCC
Q 009871          334 VAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG  413 (523)
Q Consensus       334 ~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~  413 (523)
                      .++.+|||+|||+|.++..++..+ .+|+++|+|+.|++.++.+...         ..+...|+...       ++.+++
T Consensus        41 ~~~~~vLDiGcG~G~~~~~l~~~~-~~v~~~D~s~~~l~~a~~~~~~---------~~~~~~d~~~~-------~~~~~~  103 (251)
T PRK10258         41 RKFTHVLDAGCGPGWMSRYWRERG-SQVTALDLSPPMLAQARQKDAA---------DHYLAGDIESL-------PLATAT  103 (251)
T ss_pred             cCCCeEEEeeCCCCHHHHHHHHcC-CeEEEEECCHHHHHHHHhhCCC---------CCEEEcCcccC-------cCCCCc
Confidence            356799999999998877777665 5899999999999999876421         12223333221       234568


Q ss_pred             ccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEe
Q 009871          414 FEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHI  460 (523)
Q Consensus       414 fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~  460 (523)
                      ||+|+++.++.+..+...++..+.++|         +|||.++++..
T Consensus       104 fD~V~s~~~l~~~~d~~~~l~~~~~~L---------k~gG~l~~~~~  141 (251)
T PRK10258        104 FDLAWSNLAVQWCGNLSTALRELYRVV---------RPGGVVAFTTL  141 (251)
T ss_pred             EEEEEECchhhhcCCHHHHHHHHHHHc---------CCCeEEEEEeC
Confidence            999999999988889999999999999         77999988753

>TIGR00536 hemK_fam HemK family putative methylases

Probab=99.26  E-value=2e-10  Score=112.75  Aligned_cols=125  Identities=15%  Similarity=0.113  Sum_probs=90.0

Q ss_pred             CeEEEECCCccHHHHHHHhcCC-CEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCcc
Q 009871          337 KKVLELGCGCGGICSMVAAGSA-DLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFE  415 (523)
Q Consensus       337 ~~VLElG~G~G~l~~~~a~~~~-~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~fD  415 (523)
                      .+|||+|||+|.++..++...+ .+|+++|+|+.+++.+++|+..++..   .++.+...||.+.        +...+||
T Consensus       116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~---~~v~~~~~d~~~~--------~~~~~fD  184 (284)
T TIGR00536       116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLE---HRVEFIQSNLFEP--------LAGQKID  184 (284)
T ss_pred             CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC---CcEEEEECchhcc--------CcCCCcc
Confidence            6899999999998888888754 58999999999999999999998764   4577777777542        1223799


Q ss_pred             EEEEccccCC--------------CC-----------ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhHHH
Q 009871          416 VILGTDVSYI--------------PE-----------AILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSML  470 (523)
Q Consensus       416 ~Ii~~d~~y~--------------~~-----------~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~~  470 (523)
                      +|+++.....              +.           .+..++..+.++|         +|||.+++.....  ....+.
T Consensus       185 lIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L---------~~gG~l~~e~g~~--q~~~~~  253 (284)
T TIGR00536       185 IIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYL---------KPNGFLVCEIGNW--QQKSLK  253 (284)
T ss_pred             EEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhc---------cCCCEEEEEECcc--HHHHHH
Confidence            9999732211              10           3456777788888         6799988866542  233455


Q ss_pred             HHHH-HcCCEEEEE
Q 009871          471 SAAT-QCGFRLVDK  483 (523)
Q Consensus       471 ~~~~-~~gf~~~~~  483 (523)
                      +.+. +.||.-..+
T Consensus       254 ~~~~~~~~~~~~~~  267 (284)
T TIGR00536       254 ELLRIKFTWYDVEN  267 (284)
T ss_pred             HHHHhcCCCceeEE
Confidence            5565 467865444

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=99.26  E-value=5.8e-12  Score=103.57  Aligned_cols=70  Identities=24%  Similarity=0.394  Sum_probs=58.0

Q ss_pred             EEEECCCccccHHHHHhhC---CCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871           79 VLEVGCGAGNTIFPLIAAY---PDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM  152 (523)
Q Consensus        79 iLDiGcG~G~~~~~l~~~~---~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~  152 (523)
                      |||+|||+|..+..+++.+   |..+++|+|+|++|++.++++......+++++++|+.++    ++.+++||+|++
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l----~~~~~~~D~v~~   73 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDL----PFSDGKFDLVVC   73 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCH----HHHSSSEEEEEE
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHC----cccCCCeeEEEE
Confidence            7999999999999999886   447899999999999999998755555899999999876    566789999988

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=99.26  E-value=2e-10  Score=106.68  Aligned_cols=130  Identities=20%  Similarity=0.222  Sum_probs=94.1

Q ss_pred             CCCCCCCeEEEECCCccHHHHHHHhc-C-CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhh
Q 009871          331 PTIVAGKKVLELGCGCGGICSMVAAG-S-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKE  408 (523)
Q Consensus       331 ~~~~~~~~VLElG~G~G~l~~~~a~~-~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~  408 (523)
                      ....++.+|||+|||+|.++..++.. + ..+|+++|+++.+++.+++|+..+++.   .++.+...|..+.  +    +
T Consensus        36 l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~---~~v~~~~~d~~~~--l----~  106 (198)
T PRK00377         36 LRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVL---NNIVLIKGEAPEI--L----F  106 (198)
T ss_pred             cCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCC---CCeEEEEechhhh--H----h
Confidence            35568899999999999888887764 3 358999999999999999999998753   3455544443221  1    1


Q ss_pred             hcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhHHHHHHHHcCCEEEE
Q 009871          409 ENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLVD  482 (523)
Q Consensus       409 ~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~~~~~~~~gf~~~~  482 (523)
                      .....||.|+..-   ....+..+++.+.++|         +|+|.+++.. ............+++.||.++.
T Consensus       107 ~~~~~~D~V~~~~---~~~~~~~~l~~~~~~L---------kpgG~lv~~~-~~~~~~~~~~~~l~~~g~~~~~  167 (198)
T PRK00377        107 TINEKFDRIFIGG---GSEKLKEIISASWEII---------KKGGRIVIDA-ILLETVNNALSALENIGFNLEI  167 (198)
T ss_pred             hcCCCCCEEEECC---CcccHHHHHHHHHHHc---------CCCcEEEEEe-ecHHHHHHHHHHHHHcCCCeEE
Confidence            1135899999852   3456788999999999         6799988643 3333445678888899986543

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=99.26  E-value=9.6e-11  Score=101.78  Aligned_cols=148  Identities=14%  Similarity=0.204  Sum_probs=110.0

Q ss_pred             hhHHHHHHHHhcCCC---CCCCC-eEEEECCCccHHHHHHHhcC-CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEE
Q 009871          318 ESAHLMAAVLARNPT---IVAGK-KVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLIT  392 (523)
Q Consensus       318 ~~a~~la~~l~~~~~---~~~~~-~VLElG~G~G~l~~~~a~~~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~  392 (523)
                      ++...+.+||..+..   ..+.. +|||||||.|.+..-++..+ ....+++|+|+.++++|+.-++.++.+   ..|++
T Consensus        46 ~ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~---n~I~f  122 (227)
T KOG1271|consen   46 DAEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFS---NEIRF  122 (227)
T ss_pred             cHHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCC---cceeE
Confidence            455667888877643   22344 99999999998888888876 446999999999999999888888886   55899


Q ss_pred             EeeecCCCCcchhhhhhcCCCccEEEEc---cccC-C----CCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCC
Q 009871          393 KRLEWGNRDHIEAIKEENNEGFEVILGT---DVSY-I----PEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQV  464 (523)
Q Consensus       393 ~~ldw~~~~~~~~~~~~~~~~fD~Ii~~---d~~y-~----~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~  464 (523)
                      .++|..+++       +..++||+|+--   |.+- .    ..-+.-.+..+.++|         +|+|.|+|....  .
T Consensus       123 ~q~DI~~~~-------~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll---------~~~gifvItSCN--~  184 (227)
T KOG1271|consen  123 QQLDITDPD-------FLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLL---------SPGGIFVITSCN--F  184 (227)
T ss_pred             EEeeccCCc-------ccccceeEEeecCceeeeecCCCCcccceeeehhhHhhcc---------CCCcEEEEEecC--c
Confidence            999988763       235689999833   2111 1    112345678899999         679999987654  5


Q ss_pred             ChhHHHHHHHHcCCEEEEEcCC
Q 009871          465 DEPSMLSAATQCGFRLVDKWPS  486 (523)
Q Consensus       465 ~~~~~~~~~~~~gf~~~~~~~~  486 (523)
                      +.+++.+..+..||++...-+.
T Consensus       185 T~dELv~~f~~~~f~~~~tvp~  206 (227)
T KOG1271|consen  185 TKDELVEEFENFNFEYLSTVPT  206 (227)
T ss_pred             cHHHHHHHHhcCCeEEEEeecc
Confidence            6677899999999988766543

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.26  E-value=4.1e-11  Score=113.37  Aligned_cols=112  Identities=11%  Similarity=0.116  Sum_probs=79.6

Q ss_pred             CCCCeEEEECCCccHHHHHHHhc-C-CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcC
Q 009871          334 VAGKKVLELGCGCGGICSMVAAG-S-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENN  411 (523)
Q Consensus       334 ~~~~~VLElG~G~G~l~~~~a~~-~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~  411 (523)
                      .++.+|||+|||||.++..++.. + ..+|+++|+|+.|++.+++++...+..    ++.+...|-.+   +    ++++
T Consensus        46 ~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~----~i~~v~~da~~---l----p~~d  114 (233)
T PF01209_consen   46 RPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQ----NIEFVQGDAED---L----PFPD  114 (233)
T ss_dssp             -S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT------SEEEEE-BTTB---------S-T
T ss_pred             CCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCC----CeeEEEcCHHH---h----cCCC
Confidence            46789999999999888888776 3 358999999999999999998876542    55555443322   2    4567


Q ss_pred             CCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCC
Q 009871          412 EGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVD  465 (523)
Q Consensus       412 ~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~  465 (523)
                      ++||+|+++-.+.+..+....++.+.++|         +|||.+++....+...
T Consensus       115 ~sfD~v~~~fglrn~~d~~~~l~E~~RVL---------kPGG~l~ile~~~p~~  159 (233)
T PF01209_consen  115 NSFDAVTCSFGLRNFPDRERALREMYRVL---------KPGGRLVILEFSKPRN  159 (233)
T ss_dssp             T-EEEEEEES-GGG-SSHHHHHHHHHHHE---------EEEEEEEEEEEEB-SS
T ss_pred             CceeEEEHHhhHHhhCCHHHHHHHHHHHc---------CCCeEEEEeeccCCCC
Confidence            89999999988888888999999999999         7799998887776543

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=99.26  E-value=2.3e-10  Score=100.90  Aligned_cols=125  Identities=21%  Similarity=0.173  Sum_probs=87.6

Q ss_pred             CCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcC
Q 009871          332 TIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENN  411 (523)
Q Consensus       332 ~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~  411 (523)
                      ....|++|+|||||||.++..++..|+.+|+++|+++++++.+++|+....     ..+.+...|..+.          .
T Consensus        42 g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~-----g~v~f~~~dv~~~----------~  106 (198)
T COG2263          42 GDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELL-----GDVEFVVADVSDF----------R  106 (198)
T ss_pred             CCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhC-----CceEEEEcchhhc----------C
Confidence            345899999999999999999999999999999999999999999999822     4567666555443          4


Q ss_pred             CCccEEEEccccCCC--CChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhHH-HHHHHHcCCEEEEEcCC
Q 009871          412 EGFEVILGTDVSYIP--EAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSM-LSAATQCGFRLVDKWPS  486 (523)
Q Consensus       412 ~~fD~Ii~~d~~y~~--~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~-~~~~~~~gf~~~~~~~~  486 (523)
                      ..||.++.+..+=..  ..=.+++....++.            -.+|-.+   +.....| ...+...|+.+...|+.
T Consensus       107 ~~~dtvimNPPFG~~~rhaDr~Fl~~Ale~s------------~vVYsiH---~a~~~~f~~~~~~~~G~~v~~~~~~  169 (198)
T COG2263         107 GKFDTVIMNPPFGSQRRHADRPFLLKALEIS------------DVVYSIH---KAGSRDFVEKFAADLGGTVTHIERA  169 (198)
T ss_pred             CccceEEECCCCccccccCCHHHHHHHHHhh------------heEEEee---ccccHHHHHHHHHhcCCeEEEEEEE
Confidence            689999988665332  22233333333332            2333333   2233444 55667899999888764

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=99.26  E-value=5.7e-10  Score=112.30  Aligned_cols=173  Identities=17%  Similarity=0.185  Sum_probs=114.2

Q ss_pred             CCCCCCceEEEEEEcCceEEEEEecccccccCCCcccccchhHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhc-
Q 009871          278 LSSFEDNEMIEVNLRDRSFKIEVLSKEYQHTCRSTGLMLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAG-  356 (523)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~G~~~W~~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~-  356 (523)
                      ...|-.+-+-.-.|.|.++.+.  ++.         +..=+.+..+.+.+....  .++.+|||||||+|.++..++.. 
T Consensus       207 ~gePlqYIlG~~~F~G~~f~V~--p~v---------LIPRpeTE~LVe~aL~~l--~~~~rVLDLGcGSG~IaiaLA~~~  273 (423)
T PRK14966        207 NGEPVAYILGVREFYGRRFAVN--PNV---------LIPRPETEHLVEAVLARL--PENGRVWDLGTGSGAVAVTVALER  273 (423)
T ss_pred             cCCCceeEeeeeeecCcEEEeC--CCc---------cCCCccHHHHHHHhhhcc--CCCCEEEEEeChhhHHHHHHHHhC
Confidence            3444455566667777776654  111         111233445555554432  24569999999999888888765 


Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCccEEEEccccCCCC---------
Q 009871          357 SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPE---------  427 (523)
Q Consensus       357 ~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~---------  427 (523)
                      ...+|+++|+|+.|++.+++|++.++.     ++.+...||.+...     + ...+||+|+++.......         
T Consensus       274 p~a~VtAVDiS~~ALe~AreNa~~~g~-----rV~fi~gDl~e~~l-----~-~~~~FDLIVSNPPYI~~~e~~l~~~~v  342 (423)
T PRK14966        274 PDAFVRASDISPPALETARKNAADLGA-----RVEFAHGSWFDTDM-----P-SEGKWDIIVSNPPYIENGDKHLLQGDL  342 (423)
T ss_pred             CCCEEEEEECCHHHHHHHHHHHHHcCC-----cEEEEEcchhcccc-----c-cCCCccEEEECCCCCCcchhhhcchhh
Confidence            456899999999999999999988653     46777777754311     0 134799999976432110         


Q ss_pred             ----------------ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhHHHHHHHHcCCEEEEEcC
Q 009871          428 ----------------AILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLVDKWP  485 (523)
Q Consensus       428 ----------------~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~~~~~~~~gf~~~~~~~  485 (523)
                                      .+..+++.+.+.|         +|+|.+++....  ...+.+.+.+++.||...++..
T Consensus       343 ~~EP~~AL~gG~dGL~~yr~Ii~~a~~~L---------kpgG~lilEiG~--~Q~e~V~~ll~~~Gf~~v~v~k  405 (423)
T PRK14966        343 RFEPQIALTDFSDGLSCIRTLAQGAPDRL---------AEGGFLLLEHGF--DQGAAVRGVLAENGFSGVETLP  405 (423)
T ss_pred             hcCHHHHhhCCCchHHHHHHHHHHHHHhc---------CCCcEEEEEECc--cHHHHHHHHHHHCCCcEEEEEE
Confidence                            2346666677778         679988775533  3345688888889998766543

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=99.25  E-value=1.7e-10  Score=113.64  Aligned_cols=139  Identities=16%  Similarity=0.159  Sum_probs=89.8

Q ss_pred             HHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCC-CCCceEEEeeecCCCCc
Q 009871          324 AAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPP-FLAKLITKRLEWGNRDH  402 (523)
Q Consensus       324 a~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~-~~~~v~~~~ldw~~~~~  402 (523)
                      .+++.... ..++.+|||||||+|.++..++..+ .+|+++|+|+.|++.+++|+....... ....+.+...|+.+   
T Consensus       134 l~~l~~~~-~~~~~~VLDlGcGtG~~a~~la~~g-~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~---  208 (315)
T PLN02585        134 LLWLAEDG-SLAGVTVCDAGCGTGSLAIPLALEG-AIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLES---  208 (315)
T ss_pred             HHHHHhcC-CCCCCEEEEecCCCCHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhh---
Confidence            44554322 2367899999999998888888875 589999999999999999987643210 01234454444321   


Q ss_pred             chhhhhhcCCCccEEEEccccCCCCC--hHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec------------------
Q 009871          403 IEAIKEENNEGFEVILGTDVSYIPEA--ILPLFATAKELTASSNKSLREDQQPAFILCHIFR------------------  462 (523)
Q Consensus       403 ~~~~~~~~~~~fD~Ii~~d~~y~~~~--~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r------------------  462 (523)
                            + .++||+|++.+++++...  ...+++.+..+.           +|.++++...+                  
T Consensus       209 ------l-~~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~l~-----------~g~liIs~~p~~~~~~~l~~~g~~~~g~~  270 (315)
T PLN02585        209 ------L-SGKYDTVTCLDVLIHYPQDKADGMIAHLASLA-----------EKRLIISFAPKTLYYDILKRIGELFPGPS  270 (315)
T ss_pred             ------c-CCCcCEEEEcCEEEecCHHHHHHHHHHHHhhc-----------CCEEEEEeCCcchHHHHHHHHHhhcCCCC
Confidence                  1 368999999999866432  334555555433           33444443221                  


Q ss_pred             ------CCChhHHHHHHHHcCCEEEEEcC
Q 009871          463 ------QVDEPSMLSAATQCGFRLVDKWP  485 (523)
Q Consensus       463 ------~~~~~~~~~~~~~~gf~~~~~~~  485 (523)
                            ..+.+++.+.+++.||++.....
T Consensus       271 ~~~r~y~~s~eel~~lL~~AGf~v~~~~~  299 (315)
T PLN02585        271 KATRAYLHAEADVERALKKAGWKVARREM  299 (315)
T ss_pred             cCceeeeCCHHHHHHHHHHCCCEEEEEEE
Confidence                  01346678888889999876644

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=99.25  E-value=6.2e-11  Score=110.28  Aligned_cols=128  Identities=13%  Similarity=0.007  Sum_probs=94.0

Q ss_pred             CCCeEEEECCCccHHHHHHHhcC-CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhh-hhcCC
Q 009871          335 AGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIK-EENNE  412 (523)
Q Consensus       335 ~~~~VLElG~G~G~l~~~~a~~~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~-~~~~~  412 (523)
                      .+.+|||+|||+|.++..+++.. ..+|+++|+++.+++.+++|+..++.    .++.+...|+.     ..+. .+.++
T Consensus        40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~----~~v~~~~~d~~-----~~l~~~~~~~  110 (202)
T PRK00121         40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGL----TNLRLLCGDAV-----EVLLDMFPDG  110 (202)
T ss_pred             CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCC----CCEEEEecCHH-----HHHHHHcCcc
Confidence            46799999999998888887764 35899999999999999999988765    34666655541     1111 13467


Q ss_pred             CccEEEEccccCCCC--------ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhHHHHHHHHcCCEEE
Q 009871          413 GFEVILGTDVSYIPE--------AILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLV  481 (523)
Q Consensus       413 ~fD~Ii~~d~~y~~~--------~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~~~~~~~~gf~~~  481 (523)
                      +||+|+++-...+..        ..+.+++.+.++|         +|+|.++++...+. ....+++.+++.||.+.
T Consensus       111 ~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~L---------kpgG~l~i~~~~~~-~~~~~~~~~~~~g~~~~  177 (202)
T PRK00121        111 SLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKL---------KPGGEIHFATDWEG-YAEYMLEVLSAEGGFLV  177 (202)
T ss_pred             ccceEEEECCCCCCCccccccccCCHHHHHHHHHHc---------CCCCEEEEEcCCHH-HHHHHHHHHHhCccccc
Confidence            899999863321111        2578999999999         77999999865432 23467888899998876

>PRK06202 hypothetical protein; Provisional

Probab=99.24  E-value=3.8e-11  Score=114.55  Aligned_cols=73  Identities=23%  Similarity=0.205  Sum_probs=58.8

Q ss_pred             CCCCeEEEECCCccccHHHHHhh----CCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeE
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAA----YPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDI  149 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~----~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~  149 (523)
                      .++.+|||||||+|.++..|++.    +++.+|+|+|+|+.|++.|+++...  .++++.+.+...+    +.++++||+
T Consensus        59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~--~~~~~~~~~~~~l----~~~~~~fD~  132 (232)
T PRK06202         59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR--PGVTFRQAVSDEL----VAEGERFDV  132 (232)
T ss_pred             CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc--CCCeEEEEecccc----cccCCCccE
Confidence            56789999999999998888753    4567899999999999999987532  3467777777655    446789999


Q ss_pred             EEE
Q 009871          150 VTM  152 (523)
Q Consensus       150 V~~  152 (523)
                      |++
T Consensus       133 V~~  135 (232)
T PRK06202        133 VTS  135 (232)
T ss_pred             EEE
Confidence            999

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=99.24  E-value=9.1e-11  Score=113.86  Aligned_cols=75  Identities=20%  Similarity=0.330  Sum_probs=63.5

Q ss_pred             hhhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCcee
Q 009871           69 RYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSID  148 (523)
Q Consensus        69 ~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD  148 (523)
                      ..++..++.+|||||||+|.++..+++.+|+.+|+|+|+|+.|++.|+++.    .++.++.+|+...     .++++||
T Consensus        25 ~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~----~~~~~~~~d~~~~-----~~~~~fD   95 (258)
T PRK01683         25 ARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL----PDCQFVEADIASW-----QPPQALD   95 (258)
T ss_pred             hhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC----CCCeEEECchhcc-----CCCCCcc
Confidence            334446778999999999999999999988889999999999999999874    4588999998754     2356899


Q ss_pred             EEEE
Q 009871          149 IVTM  152 (523)
Q Consensus       149 ~V~~  152 (523)
                      +|++
T Consensus        96 ~v~~   99 (258)
T PRK01683         96 LIFA   99 (258)
T ss_pred             EEEE
Confidence            9999

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=99.24  E-value=1.5e-10  Score=112.96  Aligned_cols=91  Identities=19%  Similarity=0.280  Sum_probs=70.1

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCC---CEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEE
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPD---VFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIV  150 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~---~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V  150 (523)
                      ....+|||+|||+|.++..+++..+.   ..|+|+|+|+.|++.|+++.    +++.+.++|+.++    |+++++||+|
T Consensus        84 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~----~~~~~~~~d~~~l----p~~~~sfD~I  155 (272)
T PRK11088         84 EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY----PQVTFCVASSHRL----PFADQSLDAI  155 (272)
T ss_pred             CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC----CCCeEEEeecccC----CCcCCceeEE
Confidence            35578999999999999999887652   47999999999999998764    4688999999877    7788999999


Q ss_pred             EE---ccccccceeeecceEEecCCeEEEe
Q 009871          151 TM---ERLTGKDQKISENFYVRGDGTRAFY  177 (523)
Q Consensus       151 ~~---~~~~~~~~~~~~~~~~~~~g~~~~~  177 (523)
                      ++   ........+     .++++|.++..
T Consensus       156 ~~~~~~~~~~e~~r-----vLkpgG~li~~  180 (272)
T PRK11088        156 IRIYAPCKAEELAR-----VVKPGGIVITV  180 (272)
T ss_pred             EEecCCCCHHHHHh-----hccCCCEEEEE
Confidence            98   111122222     56777776553

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=99.24  E-value=5.8e-11  Score=119.42  Aligned_cols=120  Identities=21%  Similarity=0.261  Sum_probs=87.6

Q ss_pred             CCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEEE-c
Q 009871           75 GRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM-E  153 (523)
Q Consensus        75 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~-~  153 (523)
                      ++.+|||+|||+|.++..++...|+++|+|+|+|+.|++.|+++....+.+++++++|+.+..++   ..++||+|+| .
T Consensus       251 ~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~---~~~~FDLIVSNP  327 (423)
T PRK14966        251 ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMP---SEGKWDIIVSNP  327 (423)
T ss_pred             CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccc---cCCCccEEEECC
Confidence            45689999999999999999888889999999999999999998765556899999998654221   2457999999 1


Q ss_pred             cc--------cc------cceeee-------------c--ceEEecCCeEEEee---CHHHHHHHHHhCCCcEEEE
Q 009871          154 RL--------TG------KDQKIS-------------E--NFYVRGDGTRAFYF---SNDFLTSLFKENGFDVEEL  197 (523)
Q Consensus       154 ~~--------~~------~~~~~~-------------~--~~~~~~~g~~~~~~---~~~~l~~ll~~~Gf~~~~~  197 (523)
                      .+        ..      +...+.             .  ..+++++|...+..   ..+.+.+++++.||..+++
T Consensus       328 PYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~~Q~e~V~~ll~~~Gf~~v~v  403 (423)
T PRK14966        328 PYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGFDQGAAVRGVLAENGFSGVET  403 (423)
T ss_pred             CCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECccHHHHHHHHHHHCCCcEEEE
Confidence            11        00      000000             0  12567888766532   4677999999999986555

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=99.24  E-value=3.4e-11  Score=114.29  Aligned_cols=119  Identities=20%  Similarity=0.303  Sum_probs=85.3

Q ss_pred             CeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC--CCcEEEEEeeccCCccCCCCCCCceeEEEE--
Q 009871           77 KDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISDDLSRQISPSSIDIVTM--  152 (523)
Q Consensus        77 ~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~--  152 (523)
                      ++|||||||+|..+..+++.+++++|+|+|+|+.+++.|+++....  ..+++++..|+...    ++ +++||+|++  
T Consensus         1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~----~~-~~~fD~I~~~~   75 (224)
T smart00828        1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKD----PF-PDTYDLVFGFE   75 (224)
T ss_pred             CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccC----CC-CCCCCEeehHH
Confidence            3799999999999999999988889999999999999999876432  35789999998755    33 358999998  


Q ss_pred             ---------------ccccccceeeecceEEe-------cCCeEEEeeCHHHHHHHHHhCCCcEEEEEeE
Q 009871          153 ---------------ERLTGKDQKISENFYVR-------GDGTRAFYFSNDFLTSLFKENGFDVEELGLC  200 (523)
Q Consensus       153 ---------------~~~~~~~~~~~~~~~~~-------~~g~~~~~~~~~~l~~ll~~~Gf~~~~~~~~  200 (523)
                                     .+.+++++.+.-.....       ......++.+.+++.+++.++||.+++....
T Consensus        76 ~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~~~~~~  145 (224)
T smart00828       76 VIHHIKDKMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLRVVEGVDA  145 (224)
T ss_pred             HHHhCCCHHHHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCeEEEeEEC
Confidence                           23334444432111100       0001123457889999999999998766543

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=99.24  E-value=1.7e-10  Score=110.47  Aligned_cols=76  Identities=22%  Similarity=0.198  Sum_probs=63.9

Q ss_pred             CCCCCeEEEECCCccccHHHHHhhCC-CCEEEEEeCCHHHHHHHHhcccc--CCCcEEEEEeeccCCccCCCCCCCceeE
Q 009871           73 GAGRKDVLEVGCGAGNTIFPLIAAYP-DVFVYACDFSPRAVNLVMTHKDF--TETRVSTFVCDLISDDLSRQISPSSIDI  149 (523)
Q Consensus        73 ~~~~~~iLDiGcG~G~~~~~l~~~~~-~~~v~gvD~S~~~l~~a~~~~~~--~~~~v~~~~~d~~~~~~~~~~~~~~fD~  149 (523)
                      ..++.+|||+|||+|..+..+++.++ ..+|+|+|+|+.+++.++++...  ...++.+..+|+.+.    ++++++||+
T Consensus        49 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~----~~~~~~~D~  124 (239)
T PRK00216         49 VRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEAL----PFPDNSFDA  124 (239)
T ss_pred             CCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccC----CCCCCCccE
Confidence            34578999999999999999998876 68999999999999999997643  235689999999876    456678999


Q ss_pred             EEE
Q 009871          150 VTM  152 (523)
Q Consensus       150 V~~  152 (523)
                      |++
T Consensus       125 I~~  127 (239)
T PRK00216        125 VTI  127 (239)
T ss_pred             EEE
Confidence            987

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=99.23  E-value=2.4e-10  Score=110.61  Aligned_cols=99  Identities=11%  Similarity=0.130  Sum_probs=76.9

Q ss_pred             CCCCCCeEEEECCCccHHHHHHHhcC-CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhc
Q 009871          332 TIVAGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEEN  410 (523)
Q Consensus       332 ~~~~~~~VLElG~G~G~l~~~~a~~~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~  410 (523)
                      ...++.+|||||||+|.++..++... ..+|+++|+|+.|++.++++           .+.+...|..+   .     ..
T Consensus        26 ~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~-----------~~~~~~~d~~~---~-----~~   86 (255)
T PRK14103         26 GAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER-----------GVDARTGDVRD---W-----KP   86 (255)
T ss_pred             CCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc-----------CCcEEEcChhh---C-----CC
Confidence            34577899999999998888888774 35899999999999998752           12333322211   1     12


Q ss_pred             CCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEE
Q 009871          411 NEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILC  458 (523)
Q Consensus       411 ~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~  458 (523)
                      .++||+|+++.++++......+++.+.++|         +|||.+++.
T Consensus        87 ~~~fD~v~~~~~l~~~~d~~~~l~~~~~~L---------kpgG~l~~~  125 (255)
T PRK14103         87 KPDTDVVVSNAALQWVPEHADLLVRWVDEL---------APGSWIAVQ  125 (255)
T ss_pred             CCCceEEEEehhhhhCCCHHHHHHHHHHhC---------CCCcEEEEE
Confidence            458999999999999888999999999999         779998875

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=99.22  E-value=2.8e-10  Score=120.02  Aligned_cols=174  Identities=16%  Similarity=0.156  Sum_probs=115.8

Q ss_pred             CCCCCceEEEEEEcCceEEEEEecccccccCCCcccccchhHHHHHHHHhcCCC-----------------------CCC
Q 009871          279 SSFEDNEMIEVNLRDRSFKIEVLSKEYQHTCRSTGLMLWESAHLMAAVLARNPT-----------------------IVA  335 (523)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~G~~~W~~a~~la~~l~~~~~-----------------------~~~  335 (523)
                      ..+-.|-+-...|.|.+|.|.          ..+-.+..++..++-..+.....                       ..+
T Consensus        69 ~ePlqYI~G~~~F~g~~f~V~----------~~VLIPRpeTE~Lve~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (506)
T PRK01544         69 HEPIAYITGVKEFYSREFIVN----------KHVLIPRSDTEVLVDVVFQCHSRESGNPEKKQLNPCFRGNDISSNCNDK  138 (506)
T ss_pred             CCCHHHHhCcCEEcCcEEEeC----------CCcccCCCcHHHHHHHHHHHhhhccccccccccccccccccccccccCC
Confidence            334445555677788877776          34445555655554433322110                       113


Q ss_pred             CCeEEEECCCccHHHHHHHhc-CCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCc
Q 009871          336 GKKVLELGCGCGGICSMVAAG-SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGF  414 (523)
Q Consensus       336 ~~~VLElG~G~G~l~~~~a~~-~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~f  414 (523)
                      +.+|||+|||+|.++..+++. ...+|+++|+|+.+++.|++|+..+++.   .++.+...||.+.        +...+|
T Consensus       139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~---~~v~~~~~D~~~~--------~~~~~f  207 (506)
T PRK01544        139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVT---DRIQIIHSNWFEN--------IEKQKF  207 (506)
T ss_pred             CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCc---cceeeeecchhhh--------CcCCCc
Confidence            468999999999888887765 4568999999999999999999988764   4566666665432        223589


Q ss_pred             cEEEEccccCCC--------------------------CChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhH
Q 009871          415 EVILGTDVSYIP--------------------------EAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPS  468 (523)
Q Consensus       415 D~Ii~~d~~y~~--------------------------~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~  468 (523)
                      |+|+++......                          +.+..+++.+.++|         +|+|.+++....  ...+.
T Consensus       208 DlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L---------~~gG~l~lEig~--~q~~~  276 (506)
T PRK01544        208 DFIVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFL---------KPNGKIILEIGF--KQEEA  276 (506)
T ss_pred             cEEEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhc---------cCCCEEEEEECC--chHHH
Confidence            999986432211                          12344666777788         679999886543  23456


Q ss_pred             HHHHHHHcCCEEEEEc
Q 009871          469 MLSAATQCGFRLVDKW  484 (523)
Q Consensus       469 ~~~~~~~~gf~~~~~~  484 (523)
                      +.+.+.+.||....+.
T Consensus       277 v~~~~~~~g~~~~~~~  292 (506)
T PRK01544        277 VTQIFLDHGYNIESVY  292 (506)
T ss_pred             HHHHHHhcCCCceEEE
Confidence            7778888999876654

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=99.22  E-value=1.4e-10  Score=111.57  Aligned_cols=106  Identities=16%  Similarity=0.189  Sum_probs=81.3

Q ss_pred             CCCeEEEECCCccHHHHHHHhc---CCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcC
Q 009871          335 AGKKVLELGCGCGGICSMVAAG---SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENN  411 (523)
Q Consensus       335 ~~~~VLElG~G~G~l~~~~a~~---~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~  411 (523)
                      ++.+|||||||+|.++..++..   ...+|+++|+|+.|++.+++|+..++..   .++.+...+..+.         +.
T Consensus        56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~---~~v~~~~~d~~~~---------~~  123 (247)
T PRK15451         56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAP---TPVDVIEGDIRDI---------AI  123 (247)
T ss_pred             CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCC---CCeEEEeCChhhC---------CC
Confidence            6789999999999877777652   3458999999999999999999886654   3566655444321         22


Q ss_pred             CCccEEEEccccCCCC--ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee
Q 009871          412 EGFEVILGTDVSYIPE--AILPLFATAKELTASSNKSLREDQQPAFILCHIF  461 (523)
Q Consensus       412 ~~fD~Ii~~d~~y~~~--~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~  461 (523)
                      ..+|+|+++-++++.+  ....+++.+.+.|         +|||.++++...
T Consensus       124 ~~~D~vv~~~~l~~l~~~~~~~~l~~i~~~L---------kpGG~l~l~e~~  166 (247)
T PRK15451        124 ENASMVVLNFTLQFLEPSERQALLDKIYQGL---------NPGGALVLSEKF  166 (247)
T ss_pred             CCCCEEehhhHHHhCCHHHHHHHHHHHHHhc---------CCCCEEEEEEec
Confidence            4699999987776543  3578999999999         789999998654

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=99.22  E-value=3.8e-11  Score=107.49  Aligned_cols=109  Identities=26%  Similarity=0.346  Sum_probs=75.4

Q ss_pred             CCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871           73 GAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM  152 (523)
Q Consensus        73 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~  152 (523)
                      ..++.+|||||||+|.++..+++.  +.+|+|+|+|+.|++.  .       .+.....+....    +.++++||+|+|
T Consensus        20 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~~~g~D~~~~~~~~--~-------~~~~~~~~~~~~----~~~~~~fD~i~~   84 (161)
T PF13489_consen   20 LKPGKRVLDIGCGTGSFLRALAKR--GFEVTGVDISPQMIEK--R-------NVVFDNFDAQDP----PFPDGSFDLIIC   84 (161)
T ss_dssp             TTTTSEEEEESSTTSHHHHHHHHT--TSEEEEEESSHHHHHH--T-------TSEEEEEECHTH----HCHSSSEEEEEE
T ss_pred             cCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHhh--h-------hhhhhhhhhhhh----hccccchhhHhh
Confidence            367899999999999999999777  4479999999999988  1       123333333333    356789999999


Q ss_pred             -----------------ccccccceeeecceEE---------------ecCCeEEEeeCHHHHHHHHHhCCCcEEE
Q 009871          153 -----------------ERLTGKDQKISENFYV---------------RGDGTRAFYFSNDFLTSLFKENGFDVEE  196 (523)
Q Consensus       153 -----------------~~~~~~~~~~~~~~~~---------------~~~g~~~~~~~~~~l~~ll~~~Gf~~~~  196 (523)
                                       .+++++++.+.-....               .+.+....+++.+++..+++++||++++
T Consensus        85 ~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G~~iv~  160 (161)
T PF13489_consen   85 NDVLEHLPDPEEFLKELSRLLKPGGYLVISDPNRDDPSPRSFLKWRYDRPYGGHVHFFSPDELRQLLEQAGFEIVE  160 (161)
T ss_dssp             ESSGGGSSHHHHHHHHHHHCEEEEEEEEEEEEBTTSHHHHHHHHCCGTCHHTTTTEEBBHHHHHHHHHHTTEEEEE
T ss_pred             HHHHhhcccHHHHHHHHHHhcCCCCEEEEEEcCCcchhhhHHHhcCCcCccCceeccCCHHHHHHHHHHCCCEEEE
Confidence                             3333444443221111               1111223567999999999999999875

...

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=99.22  E-value=8.7e-11  Score=112.17  Aligned_cols=161  Identities=19%  Similarity=0.197  Sum_probs=102.6

Q ss_pred             CChHHHHHHHHHhhHHHHHHH--HhcccccccchhhhHHHHhhhhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEe
Q 009871           29 VSPFWRDKYEREAKKYWDLFY--KRHQDRFFKDRHYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACD  106 (523)
Q Consensus        29 ~~~~~~~~~~~~~~~~Wd~~y--~~~~~~f~~~~~~l~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD  106 (523)
                      +.+....+|+..+..|||..-  +.+ .....   .....+...+...++.+|||||||+|.++..+++.  +++|+|+|
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~iD   77 (233)
T PRK05134          4 VDPAEIAKFSALAARWWDPNGEFKPL-HRINP---LRLNYIREHAGGLFGKRVLDVGCGGGILSESMARL--GADVTGID   77 (233)
T ss_pred             ccHHHHHHHHHHHHHHhccCCCcHHH-HHhhH---HHHHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEc
Confidence            567788999999999998522  111 00000   00111122223356789999999999999988887  56799999


Q ss_pred             CCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEEE-----------------ccccccceeeecceE--
Q 009871          107 FSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM-----------------ERLTGKDQKISENFY--  167 (523)
Q Consensus       107 ~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~-----------------~~~~~~~~~~~~~~~--  167 (523)
                      +++.+++.|+++.......+++...|+....   ...+++||+|++                 .+++.+++.+.-...  
T Consensus        78 ~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---~~~~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~~~~~  154 (233)
T PRK05134         78 ASEENIEVARLHALESGLKIDYRQTTAEELA---AEHPGQFDVVTCMEMLEHVPDPASFVRACAKLVKPGGLVFFSTLNR  154 (233)
T ss_pred             CCHHHHHHHHHHHHHcCCceEEEecCHHHhh---hhcCCCccEEEEhhHhhccCCHHHHHHHHHHHcCCCcEEEEEecCC
Confidence            9999999999875433346788888876441   124578999998                 222333333221000  


Q ss_pred             -------------------EecCCeEEEeeCHHHHHHHHHhCCCcEEEEE
Q 009871          168 -------------------VRGDGTRAFYFSNDFLTSLFKENGFDVEELG  198 (523)
Q Consensus       168 -------------------~~~~g~~~~~~~~~~l~~ll~~~Gf~~~~~~  198 (523)
                                         .........+++.+++.++++++||+++...
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~v~~~  204 (233)
T PRK05134        155 NLKSYLLAIVGAEYVLRMLPKGTHDYKKFIKPSELAAWLRQAGLEVQDIT  204 (233)
T ss_pred             ChHHHHHHHhhHHHHhhhcCcccCchhhcCCHHHHHHHHHHCCCeEeeee
Confidence                               0001112234588899999999999987663

>PRK05785 hypothetical protein; Provisional

Probab=99.22  E-value=9.5e-11  Score=110.85  Aligned_cols=66  Identities=20%  Similarity=0.357  Sum_probs=58.1

Q ss_pred             CCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871           75 GRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM  152 (523)
Q Consensus        75 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~  152 (523)
                      ++.+|||||||||.++..+++.+ +.+|+|+|+|++|++.|+++.       .++++|++++    |+++++||+|++
T Consensus        51 ~~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~~-------~~~~~d~~~l----p~~d~sfD~v~~  116 (226)
T PRK05785         51 RPKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVAD-------DKVVGSFEAL----PFRDKSFDVVMS  116 (226)
T ss_pred             CCCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhcc-------ceEEechhhC----CCCCCCEEEEEe
Confidence            47899999999999999999886 568999999999999998752       3578999887    788999999998

>PRK08317 hypothetical protein; Provisional

Probab=99.21  E-value=1.3e-10  Score=111.26  Aligned_cols=79  Identities=24%  Similarity=0.215  Sum_probs=66.7

Q ss_pred             hhcCCCCCeEEEECCCccccHHHHHhhC-CCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCcee
Q 009871           70 YFSGAGRKDVLEVGCGAGNTIFPLIAAY-PDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSID  148 (523)
Q Consensus        70 ~~~~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD  148 (523)
                      .+...++.+|||+|||+|..+..+++.+ +.++|+|+|+|+.+++.|+++......++.+.++|+...    ++++++||
T Consensus        14 ~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~----~~~~~~~D   89 (241)
T PRK08317         14 LLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGL----PFPDGSFD   89 (241)
T ss_pred             HcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccC----CCCCCCce
Confidence            3444678899999999999999999886 678999999999999999987433446789999999876    56678999


Q ss_pred             EEEE
Q 009871          149 IVTM  152 (523)
Q Consensus       149 ~V~~  152 (523)
                      +|++
T Consensus        90 ~v~~   93 (241)
T PRK08317         90 AVRS   93 (241)
T ss_pred             EEEE
Confidence            9998

>PRK08317 hypothetical protein; Provisional

Probab=99.21  E-value=5.4e-10  Score=107.01  Aligned_cols=117  Identities=16%  Similarity=0.131  Sum_probs=87.9

Q ss_pred             HHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcC--CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCC
Q 009871          322 LMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGS--ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGN  399 (523)
Q Consensus       322 ~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~  399 (523)
                      .+-+.+.......++.+|||+|||+|.++..++...  ..+|+++|+++.+++.++++....     ...+.+...|...
T Consensus         6 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~-----~~~~~~~~~d~~~   80 (241)
T PRK08317          6 RYRARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGL-----GPNVEFVRGDADG   80 (241)
T ss_pred             HHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCC-----CCceEEEeccccc
Confidence            334444455556678899999999998888887764  358999999999999998873321     1345555544433


Q ss_pred             CCcchhhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEE
Q 009871          400 RDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCH  459 (523)
Q Consensus       400 ~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~  459 (523)
                      .       ++..++||+|++..++.+..+...+++.+.++|         +|||.+++..
T Consensus        81 ~-------~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L---------~~gG~l~~~~  124 (241)
T PRK08317         81 L-------PFPDGSFDAVRSDRVLQHLEDPARALAEIARVL---------RPGGRVVVLD  124 (241)
T ss_pred             C-------CCCCCCceEEEEechhhccCCHHHHHHHHHHHh---------cCCcEEEEEe
Confidence            2       123568999999999988888999999999999         6799988765

>PRK04266 fibrillarin; Provisional

Probab=99.20  E-value=9.1e-11  Score=110.40  Aligned_cols=128  Identities=16%  Similarity=0.275  Sum_probs=86.1

Q ss_pred             hhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeE
Q 009871           70 YFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDI  149 (523)
Q Consensus        70 ~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~  149 (523)
                      .++..++.+|||+|||+|..+..+++..+..+|+|+|+|+.|++.+.+++... .++.++.+|+.......+++ ++||+
T Consensus        67 ~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~-~nv~~i~~D~~~~~~~~~l~-~~~D~  144 (226)
T PRK04266         67 NFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER-KNIIPILADARKPERYAHVV-EKVDV  144 (226)
T ss_pred             hCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc-CCcEEEECCCCCcchhhhcc-ccCCE
Confidence            35667889999999999999999999876668999999999999777655322 57889999987421111223 46999


Q ss_pred             EEE-cccccccee-eec-ceEEecCCeEEEe-------e------CHHHHHHHHHhCCCcEEEEEe
Q 009871          150 VTM-ERLTGKDQK-ISE-NFYVRGDGTRAFY-------F------SNDFLTSLFKENGFDVEELGL  199 (523)
Q Consensus       150 V~~-~~~~~~~~~-~~~-~~~~~~~g~~~~~-------~------~~~~l~~ll~~~Gf~~~~~~~  199 (523)
                      |++ ......... +.. ..+++++|.++..       +      ..++..+.++++||+.++...
T Consensus       145 i~~d~~~p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~~~~~~~~~~~l~~aGF~~i~~~~  210 (226)
T PRK04266        145 IYQDVAQPNQAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDPKEIFKEEIRKLEEGGFEILEVVD  210 (226)
T ss_pred             EEECCCChhHHHHHHHHHHHhcCCCcEEEEEEecccccCcCCHHHHHHHHHHHHHHcCCeEEEEEc
Confidence            997 111000000 111 1267888887661       0      112356899999999876654

>PRK04266 fibrillarin; Provisional

Probab=99.20  E-value=8.8e-10  Score=103.77  Aligned_cols=144  Identities=19%  Similarity=0.200  Sum_probs=93.2

Q ss_pred             HHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcC-CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecC
Q 009871          320 AHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWG  398 (523)
Q Consensus       320 a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~  398 (523)
                      +.+|+.+  +...+.++.+|||+|||+|.++..++... ..+|+++|+++.|++.+.+++...      .++.+...|-.
T Consensus        59 ~~ll~~~--~~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~------~nv~~i~~D~~  130 (226)
T PRK04266         59 AAILKGL--KNFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER------KNIIPILADAR  130 (226)
T ss_pred             HHHHhhH--hhCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc------CCcEEEECCCC
Confidence            3444444  23455688999999999998888888764 358999999999999887776542      22333333322


Q ss_pred             CCCcchhhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCCh--------hHHH
Q 009871          399 NRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDE--------PSML  470 (523)
Q Consensus       399 ~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~--------~~~~  470 (523)
                      +..   ....+ ..+||+|+.. +- .+.....+++.+.++|         +|||.++++...|..+.        ....
T Consensus       131 ~~~---~~~~l-~~~~D~i~~d-~~-~p~~~~~~L~~~~r~L---------KpGG~lvI~v~~~~~d~~~~~~~~~~~~~  195 (226)
T PRK04266        131 KPE---RYAHV-VEKVDVIYQD-VA-QPNQAEIAIDNAEFFL---------KDGGYLLLAIKARSIDVTKDPKEIFKEEI  195 (226)
T ss_pred             Ccc---hhhhc-cccCCEEEEC-CC-ChhHHHHHHHHHHHhc---------CCCcEEEEEEecccccCcCCHHHHHHHHH
Confidence            110   00112 2469999953 21 1223345689999999         78999999544333221        2345


Q ss_pred             HHHHHcCCEEEEEcCC
Q 009871          471 SAATQCGFRLVDKWPS  486 (523)
Q Consensus       471 ~~~~~~gf~~~~~~~~  486 (523)
                      +.++++||++.+....
T Consensus       196 ~~l~~aGF~~i~~~~l  211 (226)
T PRK04266        196 RKLEEGGFEILEVVDL  211 (226)
T ss_pred             HHHHHcCCeEEEEEcC
Confidence            7788999999988763

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=99.20  E-value=3.9e-10  Score=114.79  Aligned_cols=112  Identities=18%  Similarity=0.288  Sum_probs=85.4

Q ss_pred             HHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCc
Q 009871          323 MAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDH  402 (523)
Q Consensus       323 la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~  402 (523)
                      ..+.+.+...+.++.+|||||||+|.++..+++....+|+++|+|+++++.+++++..  .     .+.+...|+.+   
T Consensus       155 k~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~--l-----~v~~~~~D~~~---  224 (383)
T PRK11705        155 KLDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAG--L-----PVEIRLQDYRD---  224 (383)
T ss_pred             HHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcc--C-----eEEEEECchhh---
Confidence            3445555555668899999999999988888877556899999999999999988742  1     24444444432   


Q ss_pred             chhhhhhcCCCccEEEEccccCCC--CChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEe
Q 009871          403 IEAIKEENNEGFEVILGTDVSYIP--EAILPLFATAKELTASSNKSLREDQQPAFILCHI  460 (523)
Q Consensus       403 ~~~~~~~~~~~fD~Ii~~d~~y~~--~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~  460 (523)
                            + +++||+|++..++.+.  ...+.+++.+.++|         +|||.+++...
T Consensus       225 ------l-~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~L---------kpGG~lvl~~i  268 (383)
T PRK11705        225 ------L-NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCL---------KPDGLFLLHTI  268 (383)
T ss_pred             ------c-CCCCCEEEEeCchhhCChHHHHHHHHHHHHHc---------CCCcEEEEEEc
Confidence                  1 3589999999888774  45688999999999         77999988653

>PRK06922 hypothetical protein; Provisional

Probab=99.19  E-value=7e-11  Score=124.07  Aligned_cols=116  Identities=20%  Similarity=0.254  Sum_probs=83.3

Q ss_pred             HHHHHHhhHHHHHHHHh--cccccccchhhhHHH------HhhhhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEe
Q 009871           35 DKYEREAKKYWDLFYKR--HQDRFFKDRHYLDKE------WGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACD  106 (523)
Q Consensus        35 ~~~~~~~~~~Wd~~y~~--~~~~f~~~~~~l~~~------~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD  106 (523)
                      ..|++.+..+||-|...  ...+|.....++...      ...+....++.+|||||||+|..+..+++.+|+.+|+|+|
T Consensus       370 ~~~~r~~~~~fd~fg~r~D~~dRf~~~~~yle~m~~~~~~k~~i~d~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGID  449 (677)
T PRK06922        370 MMHARANVLLFDFFGLRKDAYDRFHNEEVYLEHMNSSADDKRIILDYIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGID  449 (677)
T ss_pred             hHHHHHHhHHHHHhccChhhHhHHHhHHHHHHhccccHHHHHHHhhhcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEE
Confidence            35777777888876553  223343333332111      0112333467899999999999999999989999999999


Q ss_pred             CCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871          107 FSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM  152 (523)
Q Consensus       107 ~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~  152 (523)
                      +|+.|++.|+++....+.++.++++|+.++  +..+++++||+|++
T Consensus       450 IS~~MLe~Ararl~~~g~~ie~I~gDa~dL--p~~fedeSFDvVVs  493 (677)
T PRK06922        450 ISENVIDTLKKKKQNEGRSWNVIKGDAINL--SSSFEKESVDTIVY  493 (677)
T ss_pred             CCHHHHHHHHHHhhhcCCCeEEEEcchHhC--ccccCCCCEEEEEE
Confidence            999999999987644446788899998765  22367889999987

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=99.19  E-value=1.2e-10  Score=106.48  Aligned_cols=116  Identities=18%  Similarity=0.278  Sum_probs=84.8

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEEE-
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM-  152 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~-  152 (523)
                      .++.+|||+|||+|.++..+++.++  +|+|+|+|+.|++.++++......++++.++|+.+.      ..++||+|++ 
T Consensus        18 ~~~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~------~~~~fD~Vi~n   89 (179)
T TIGR00537        18 LKPDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKG------VRGKFDVILFN   89 (179)
T ss_pred             cCCCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHcCCceEEEEcccccc------cCCcccEEEEC
Confidence            4567899999999999999998865  799999999999999998755445688899998643      2458999999 


Q ss_pred             ccccccc-----------------------ee-eec-ceEEecCCeEEEee----CHHHHHHHHHhCCCcEEEE
Q 009871          153 ERLTGKD-----------------------QK-ISE-NFYVRGDGTRAFYF----SNDFLTSLFKENGFDVEEL  197 (523)
Q Consensus       153 ~~~~~~~-----------------------~~-~~~-~~~~~~~g~~~~~~----~~~~l~~ll~~~Gf~~~~~  197 (523)
                      ..+....                       .. +.. ..+++++|.+.+..    ...++..++++.||....+
T Consensus        90 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l~~~gf~~~~~  163 (179)
T TIGR00537        90 PPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNGEPDTFDKLDERGFRYEIV  163 (179)
T ss_pred             CCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCChHHHHHHHHhCCCeEEEE
Confidence            1110000                       00 110 12678889876542    3678899999999987554

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=99.19  E-value=6.4e-10  Score=105.49  Aligned_cols=131  Identities=18%  Similarity=0.229  Sum_probs=97.6

Q ss_pred             CCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCC
Q 009871          334 VAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG  413 (523)
Q Consensus       334 ~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~  413 (523)
                      ..+.+|||+|||+|.++..+++.+. +|+++|.++.+++.++.++..++..    .+.+...+..+..      ...+.+
T Consensus        44 ~~~~~vLdlG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~----~~~~~~~d~~~~~------~~~~~~  112 (224)
T TIGR01983        44 LFGLRVLDVGCGGGLLSEPLARLGA-NVTGIDASEENIEVAKLHAKKDPLL----KIEYRCTSVEDLA------EKGAKS  112 (224)
T ss_pred             CCCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHcCCC----ceEEEeCCHHHhh------cCCCCC
Confidence            4678999999999988777777654 6999999999999999998876542    2444433332210      011368


Q ss_pred             ccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecC----------------------------CC
Q 009871          414 FEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ----------------------------VD  465 (523)
Q Consensus       414 fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~----------------------------~~  465 (523)
                      ||+|+++.++++......+++.+.++|         +++|.+++....+.                            .+
T Consensus       113 ~D~i~~~~~l~~~~~~~~~l~~~~~~L---------~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (224)
T TIGR01983       113 FDVVTCMEVLEHVPDPQAFIRACAQLL---------KPGGILFFSTINRTPKSYLLAIVGAEYILRIVPKGTHDWEKFIK  183 (224)
T ss_pred             ccEEEehhHHHhCCCHHHHHHHHHHhc---------CCCcEEEEEecCCCchHHHHHHHhhhhhhhcCCCCcCChhhcCC
Confidence            999999999999999999999999999         67898887653211                            12


Q ss_pred             hhHHHHHHHHcCCEEEEEc
Q 009871          466 EPSMLSAATQCGFRLVDKW  484 (523)
Q Consensus       466 ~~~~~~~~~~~gf~~~~~~  484 (523)
                      ..++.+.+++.||++.++.
T Consensus       184 ~~~l~~~l~~~G~~i~~~~  202 (224)
T TIGR01983       184 PSELTSWLESAGLRVKDVK  202 (224)
T ss_pred             HHHHHHHHHHcCCeeeeee
Confidence            3457778889999998764

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=99.19  E-value=4.3e-11  Score=106.97  Aligned_cols=79  Identities=19%  Similarity=0.263  Sum_probs=68.3

Q ss_pred             HHHhhhhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCC
Q 009871           65 KEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISP  144 (523)
Q Consensus        65 ~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  144 (523)
                      .++-..++.....+|.|+|||+|..+..|++++|++.|+|||-|++||+.|+++.    ++++|..+|+.+.     -++
T Consensus        20 ~dLla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl----p~~~f~~aDl~~w-----~p~   90 (257)
T COG4106          20 RDLLARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL----PDATFEEADLRTW-----KPE   90 (257)
T ss_pred             HHHHhhCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC----CCCceecccHhhc-----CCC
Confidence            3444455666788999999999999999999999999999999999999998875    6799999999865     356


Q ss_pred             CceeEEEE
Q 009871          145 SSIDIVTM  152 (523)
Q Consensus       145 ~~fD~V~~  152 (523)
                      ..+|++++
T Consensus        91 ~~~dllfa   98 (257)
T COG4106          91 QPTDLLFA   98 (257)
T ss_pred             Cccchhhh
Confidence            78999998

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=99.19  E-value=2.9e-10  Score=110.34  Aligned_cols=110  Identities=15%  Similarity=0.167  Sum_probs=82.2

Q ss_pred             HHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcC-CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCc
Q 009871          324 AAVLARNPTIVAGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDH  402 (523)
Q Consensus       324 a~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~  402 (523)
                      ++.+.......++.+|||||||+|.++..++... ..+|+++|+|+.|++.++++..         .+.+...|..+.  
T Consensus        20 ~~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~---------~~~~~~~d~~~~--   88 (258)
T PRK01683         20 ARDLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLP---------DCQFVEADIASW--   88 (258)
T ss_pred             HHHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCC---------CCeEEECchhcc--
Confidence            3334344444578899999999998888888764 4689999999999999987642         223332222111  


Q ss_pred             chhhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEE
Q 009871          403 IEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCH  459 (523)
Q Consensus       403 ~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~  459 (523)
                            .+..+||+|+++.++++......+++.+.++|         +|||.+++..
T Consensus        89 ------~~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~L---------kpgG~~~~~~  130 (258)
T PRK01683         89 ------QPPQALDLIFANASLQWLPDHLELFPRLVSLL---------APGGVLAVQM  130 (258)
T ss_pred             ------CCCCCccEEEEccChhhCCCHHHHHHHHHHhc---------CCCcEEEEEC
Confidence                  12358999999999988888999999999999         7799988864

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=99.18  E-value=6.4e-11  Score=100.11  Aligned_cols=108  Identities=18%  Similarity=0.186  Sum_probs=82.2

Q ss_pred             CCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCcc
Q 009871          336 GKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFE  415 (523)
Q Consensus       336 ~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~fD  415 (523)
                      |.+|||+|||+|.+...+++.+..+++++|+++.+++.++.|+..++..   .++.+...|+.+..     ..+...+||
T Consensus         1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~---~~~~~~~~D~~~~~-----~~~~~~~~D   72 (117)
T PF13659_consen    1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLD---DRVEVIVGDARDLP-----EPLPDGKFD   72 (117)
T ss_dssp             TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTT---TTEEEEESHHHHHH-----HTCTTT-EE
T ss_pred             CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCC---ceEEEEECchhhch-----hhccCceeE
Confidence            4689999999998888888888679999999999999999999998775   45777666653321     134568999


Q ss_pred             EEEEccccCCC--------CChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEe
Q 009871          416 VILGTDVSYIP--------EAILPLFATAKELTASSNKSLREDQQPAFILCHI  460 (523)
Q Consensus       416 ~Ii~~d~~y~~--------~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~  460 (523)
                      +|+++......        .....+++.+.++|         +|+|.+++...
T Consensus        73 ~Iv~npP~~~~~~~~~~~~~~~~~~~~~~~~~L---------~~gG~~~~~~~  116 (117)
T PF13659_consen   73 LIVTNPPYGPRSGDKAALRRLYSRFLEAAARLL---------KPGGVLVFITP  116 (117)
T ss_dssp             EEEE--STTSBTT----GGCHHHHHHHHHHHHE---------EEEEEEEEEEE
T ss_pred             EEEECCCCccccccchhhHHHHHHHHHHHHHHc---------CCCeEEEEEeC
Confidence            99998665532        23568899999999         67999887653

...

>TIGR00740 methyltransferase, putative

Probab=99.18  E-value=6.8e-11  Score=113.34  Aligned_cols=73  Identities=21%  Similarity=0.297  Sum_probs=60.3

Q ss_pred             CCCCeEEEECCCccccHHHHHhh--CCCCEEEEEeCCHHHHHHHHhccccC--CCcEEEEEeeccCCccCCCCCCCceeE
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAA--YPDVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISDDLSRQISPSSIDI  149 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~--~~~~~v~gvD~S~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~~~~~~~~~~fD~  149 (523)
                      .++.+|||||||+|..+..++++  .|+++|+|+|+|+.|++.|+++....  ..+++++++|+.+.    +++  .+|+
T Consensus        52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~----~~~--~~d~  125 (239)
T TIGR00740        52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHV----EIK--NASM  125 (239)
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhC----CCC--CCCE
Confidence            46779999999999999999987  36899999999999999999875432  35789999999876    333  4888


Q ss_pred             EEE
Q 009871          150 VTM  152 (523)
Q Consensus       150 V~~  152 (523)
                      |++
T Consensus       126 v~~  128 (239)
T TIGR00740       126 VIL  128 (239)
T ss_pred             Eee
Confidence            887

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=99.18  E-value=3.5e-10  Score=107.75  Aligned_cols=127  Identities=19%  Similarity=0.222  Sum_probs=87.7

Q ss_pred             CCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCC
Q 009871          334 VAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG  413 (523)
Q Consensus       334 ~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~  413 (523)
                      .++.+|||+|||+|.++..+++.+. +|+++|+++.|++.++++...++..   .++.+...|+..          ..++
T Consensus        62 ~~~~~vLDvGcG~G~~~~~l~~~~~-~v~~~D~s~~~i~~a~~~~~~~~~~---~~i~~~~~d~~~----------~~~~  127 (230)
T PRK07580         62 LTGLRILDAGCGVGSLSIPLARRGA-KVVASDISPQMVEEARERAPEAGLA---GNITFEVGDLES----------LLGR  127 (230)
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCc---cCcEEEEcCchh----------ccCC
Confidence            4678999999999988888887765 5999999999999999998776553   355665555321          1468


Q ss_pred             ccEEEEccccCCC--CChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec------------------------CCChh
Q 009871          414 FEVILGTDVSYIP--EAILPLFATAKELTASSNKSLREDQQPAFILCHIFR------------------------QVDEP  467 (523)
Q Consensus       414 fD~Ii~~d~~y~~--~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r------------------------~~~~~  467 (523)
                      ||+|++.+++++.  .....+++.+.+++         + ++.+ +....+                        ..+..
T Consensus       128 fD~v~~~~~l~~~~~~~~~~~l~~l~~~~---------~-~~~~-i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  196 (230)
T PRK07580        128 FDTVVCLDVLIHYPQEDAARMLAHLASLT---------R-GSLI-FTFAPYTPLLALLHWIGGLFPGPSRTTRIYPHREK  196 (230)
T ss_pred             cCEEEEcchhhcCCHHHHHHHHHHHHhhc---------C-CeEE-EEECCccHHHHHHHHhccccCCccCCCCccccCHH
Confidence            9999999988552  34555666666555         1 3333 332221                        01234


Q ss_pred             HHHHHHHHcCCEEEEEcC
Q 009871          468 SMLSAATQCGFRLVDKWP  485 (523)
Q Consensus       468 ~~~~~~~~~gf~~~~~~~  485 (523)
                      ++.+.+++.||++.++..
T Consensus       197 ~~~~~l~~~Gf~~~~~~~  214 (230)
T PRK07580        197 GIRRALAAAGFKVVRTER  214 (230)
T ss_pred             HHHHHHHHCCCceEeeee
Confidence            567788889999888765

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=99.18  E-value=3.2e-10  Score=105.77  Aligned_cols=153  Identities=14%  Similarity=0.201  Sum_probs=99.6

Q ss_pred             hhHHHHHHHHhcccccccc--hhhhHHHHhhhhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhc
Q 009871           41 AKKYWDLFYKRHQDRFFKD--RHYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTH  118 (523)
Q Consensus        41 ~~~~Wd~~y~~~~~~f~~~--~~~l~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~  118 (523)
                      ..++|+..|+.+...|...  ..+|...+..+. ..++.+||+.|||.|..+..|+++  +.+|+|+|+|+.+|+.+.+.
T Consensus         8 ~~~fW~~rw~~~~~~f~~~~pnp~L~~~~~~l~-~~~~~rvLvPgCGkg~D~~~LA~~--G~~V~GvDlS~~Ai~~~~~e   84 (226)
T PRK13256          8 NNQYWLDRWQNDDVGFCQESPNEFLVKHFSKLN-INDSSVCLIPMCGCSIDMLFFLSK--GVKVIGIELSEKAVLSFFSQ   84 (226)
T ss_pred             CHHHHHHHHhcCCCCCccCCCCHHHHHHHHhcC-CCCCCeEEEeCCCChHHHHHHHhC--CCcEEEEecCHHHHHHHHHH
Confidence            3468888888876655322  234445555433 246789999999999999999999  66799999999999998662


Q ss_pred             c-------------ccCCCcEEEEEeeccCCccCCCCCCCceeEEEE-------------------ccccccceeeecce
Q 009871          119 K-------------DFTETRVSTFVCDLISDDLSRQISPSSIDIVTM-------------------ERLTGKDQKISENF  166 (523)
Q Consensus       119 ~-------------~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~-------------------~~~~~~~~~~~~~~  166 (523)
                      .             ......+++.++|+.+++.. .-..+.||+|+-                   .+++++++.+.-.+
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~-~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~  163 (226)
T PRK13256         85 NTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKI-ANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLV  163 (226)
T ss_pred             cCCCcceecccccceeccCceEEEEccCcCCCcc-ccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEE
Confidence            1             12246799999999876311 012357999876                   34345554443222


Q ss_pred             EEec--CCeEEEeeCHHHHHHHHHhCCCcEEEEE
Q 009871          167 YVRG--DGTRAFYFSNDFLTSLFKENGFDVEELG  198 (523)
Q Consensus       167 ~~~~--~g~~~~~~~~~~l~~ll~~~Gf~~~~~~  198 (523)
                      +..+  .+..-|..+.+++.+++.. +|.+..+.
T Consensus       164 ~~~~~~~~GPPf~v~~~e~~~lf~~-~~~i~~l~  196 (226)
T PRK13256        164 MEHDKKSQTPPYSVTQAELIKNFSA-KIKFELID  196 (226)
T ss_pred             EecCCCCCCCCCcCCHHHHHHhccC-CceEEEee
Confidence            2111  1222344588999999964 46655444

>PHA03411 putative methyltransferase; Provisional

Probab=99.18  E-value=1.1e-10  Score=110.78  Aligned_cols=112  Identities=14%  Similarity=0.234  Sum_probs=82.0

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEEE-
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM-  152 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~-  152 (523)
                      ....+|||+|||+|.++..++.+.++.+|+|+|+|+.|++.|+++.    .+++++++|+.+.    . .+.+||+|++ 
T Consensus        63 ~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~----~~v~~v~~D~~e~----~-~~~kFDlIIsN  133 (279)
T PHA03411         63 HCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL----PEAEWITSDVFEF----E-SNEKFDVVISN  133 (279)
T ss_pred             ccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC----cCCEEEECchhhh----c-ccCCCcEEEEc
Confidence            3457899999999999988888766678999999999999999864    4688999999865    2 3468999999 


Q ss_pred             --------------ccccc--cc-eee------e-cceEEecCCeEEEe----------eCHHHHHHHHHhCCCcE
Q 009871          153 --------------ERLTG--KD-QKI------S-ENFYVRGDGTRAFY----------FSNDFLTSLFKENGFDV  194 (523)
Q Consensus       153 --------------~~~~~--~~-~~~------~-~~~~~~~~g~~~~~----------~~~~~l~~ll~~~Gf~~  194 (523)
                                    .++..  .+ ..+      . ...++++.|...+.          .+.++++++++++||..
T Consensus       134 PPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~~y~~sl~~~~y~~~l~~~g~~~  209 (279)
T PHA03411        134 PPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRPYYDGTMKSNKYLKWSKQTGLVT  209 (279)
T ss_pred             CCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEeccccccccCCHHHHHHHHHhcCcEe
Confidence                          01100  00 000      0 03367777755432          37899999999999974

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=99.18  E-value=7.5e-10  Score=94.39  Aligned_cols=107  Identities=13%  Similarity=0.114  Sum_probs=79.0

Q ss_pred             CCCCCCCeEEEECCCccHHHHHHHhcC-CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhh
Q 009871          331 PTIVAGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEE  409 (523)
Q Consensus       331 ~~~~~~~~VLElG~G~G~l~~~~a~~~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~  409 (523)
                      ....++.+|||+|||+|.++..++... ..+|+++|+++.+++.+++|+..++..    ++.+...+....  .    ..
T Consensus        15 ~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~--~----~~   84 (124)
T TIGR02469        15 LRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVS----NIVIVEGDAPEA--L----ED   84 (124)
T ss_pred             cCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCC----ceEEEecccccc--C----hh
Confidence            344467899999999999888888764 468999999999999999999887653    344443332211  0    01


Q ss_pred             cCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEE
Q 009871          410 NNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCH  459 (523)
Q Consensus       410 ~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~  459 (523)
                      ...+||+|+....   ......+++.+.++|         +|+|.+++..
T Consensus        85 ~~~~~D~v~~~~~---~~~~~~~l~~~~~~L---------k~gG~li~~~  122 (124)
T TIGR02469        85 SLPEPDRVFIGGS---GGLLQEILEAIWRRL---------RPGGRIVLNA  122 (124)
T ss_pred             hcCCCCEEEECCc---chhHHHHHHHHHHHc---------CCCCEEEEEe
Confidence            1358999998642   345678999999999         7799998764

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=99.18  E-value=4.6e-11  Score=113.78  Aligned_cols=148  Identities=15%  Similarity=0.107  Sum_probs=97.4

Q ss_pred             hHHHHHHHHhcccccccchhhhHHHHhhhhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhcccc
Q 009871           42 KKYWDLFYKRHQDRFFKDRHYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDF  121 (523)
Q Consensus        42 ~~~Wd~~y~~~~~~f~~~~~~l~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~  121 (523)
                      +.||..||+.....+.....-..+...+.+...++.+|||||||-|.++.++++++ +++|+|+++|+++.+.++++...
T Consensus        39 ~~Yscayf~~~~~tL~eAQ~~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~  117 (283)
T COG2230          39 MTYSCAYFEDPDMTLEEAQRAKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAA  117 (283)
T ss_pred             CceeeEEeCCCCCChHHHHHHHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHH
Confidence            45555555553322221111122233445666899999999999999999999998 88999999999999999997643


Q ss_pred             C--CCcEEEEEeeccCCccCCCCCCCceeEEEE-------------------ccccccceeeecceEEecCCeE----E-
Q 009871          122 T--ETRVSTFVCDLISDDLSRQISPSSIDIVTM-------------------ERLTGKDQKISENFYVRGDGTR----A-  175 (523)
Q Consensus       122 ~--~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~-------------------~~~~~~~~~~~~~~~~~~~g~~----~-  175 (523)
                      .  ..++++...|..+.       .+.||-|+|                   .+.+++++.+.-..+..++...    . 
T Consensus       118 ~gl~~~v~v~l~d~rd~-------~e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~~~~~~  190 (283)
T COG2230         118 RGLEDNVEVRLQDYRDF-------EEPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPDQEFRRFPDF  190 (283)
T ss_pred             cCCCcccEEEecccccc-------ccccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCCcccccchHH
Confidence            3  35788888888755       345999999                   3334444444322222222110    0 


Q ss_pred             ---E------eeCHHHHHHHHHhCCCcEEEE
Q 009871          176 ---F------YFSNDFLTSLFKENGFDVEEL  197 (523)
Q Consensus       176 ---~------~~~~~~l~~ll~~~Gf~~~~~  197 (523)
                         |      ..+..++.+...++||.+...
T Consensus       191 i~~yiFPgG~lPs~~~i~~~~~~~~~~v~~~  221 (283)
T COG2230         191 IDKYIFPGGELPSISEILELASEAGFVVLDV  221 (283)
T ss_pred             HHHhCCCCCcCCCHHHHHHHHHhcCcEEehH
Confidence               1      125788888889999987654

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=99.18  E-value=9.3e-11  Score=108.96  Aligned_cols=70  Identities=17%  Similarity=0.250  Sum_probs=60.2

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM  152 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~  152 (523)
                      +++.+|||||||+|..+..|++..++.+|+|||+|+.|++.|+++.    .++.+.++|+.+     ++++++||+|++
T Consensus        42 ~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~----~~~~~~~~d~~~-----~~~~~sfD~V~~  111 (204)
T TIGR03587        42 PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL----PNINIIQGSLFD-----PFKDNFFDLVLT  111 (204)
T ss_pred             CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC----CCCcEEEeeccC-----CCCCCCEEEEEE
Confidence            4667899999999999999988877889999999999999999864    346788888864     467889999988

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=99.18  E-value=1.3e-09  Score=109.36  Aligned_cols=172  Identities=20%  Similarity=0.184  Sum_probs=120.7

Q ss_pred             eEEEEEEcCceEEEEEecccccccCCCcccccchhHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEE
Q 009871          285 EMIEVNLRDRSFKIEVLSKEYQHTCRSTGLMLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVAT  364 (523)
Q Consensus       285 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~G~~~W~~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~  364 (523)
                      +.+.+...|..+.+.....      -.||+-+|.  ...-.++...   .+|++||+|-|-||+.+..+|..|+++||.+
T Consensus       178 ~~~~i~E~g~kf~v~~~~g------~kTGfFlDq--R~~R~~l~~~---~~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~V  246 (393)
T COG1092         178 EEVVIEENGVKFLVDLVDG------LKTGFFLDQ--RDNRRALGEL---AAGKRVLNLFSYTGGFSVHAALGGASEVTSV  246 (393)
T ss_pred             CcEEEEeCCeEEEEecCCc------ccceeeHHh--HHHHHHHhhh---ccCCeEEEecccCcHHHHHHHhcCCCceEEE
Confidence            3455666777777774322      367755542  2223333322   3599999999999999998888899899999


Q ss_pred             cCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhh--cCCCccEEEEccccCC---------CCChHHHH
Q 009871          365 DGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEE--NNEGFEVILGTDVSYI---------PEAILPLF  433 (523)
Q Consensus       365 D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~--~~~~fD~Ii~~d~~y~---------~~~~~~l~  433 (523)
                      |.|..+|+.+++|++.|++...  ++.+     -..+.++-+...  ...+||+||.-..-|.         ..++..|+
T Consensus       247 D~S~~al~~a~~N~~LNg~~~~--~~~~-----i~~Dvf~~l~~~~~~g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~  319 (393)
T COG1092         247 DLSKRALEWARENAELNGLDGD--RHRF-----IVGDVFKWLRKAERRGEKFDLIILDPPSFARSKKQEFSAQRDYKDLN  319 (393)
T ss_pred             eccHHHHHHHHHHHHhcCCCcc--ceee-----ehhhHHHHHHHHHhcCCcccEEEECCcccccCcccchhHHHHHHHHH
Confidence            9999999999999999998632  2222     222333333222  2359999998665554         23678888


Q ss_pred             HHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhHHHHHH----HHcCCEEEEE
Q 009871          434 ATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAA----TQCGFRLVDK  483 (523)
Q Consensus       434 ~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~~~~~----~~~gf~~~~~  483 (523)
                      ..+.++|         +|+|.+++|...+..+.+.|.+.+    ...|..+..+
T Consensus       320 ~~~~~iL---------~pgG~l~~~s~~~~~~~~~f~~~i~~a~~~~~~~~~~~  364 (393)
T COG1092         320 DLALRLL---------APGGTLVTSSCSRHFSSDLFLEIIARAAAAAGRRAQEI  364 (393)
T ss_pred             HHHHHHc---------CCCCEEEEEecCCccCHHHHHHHHHHHHHhcCCcEEEe
Confidence            8899999         779999999999888887766544    4455555554

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=99.18  E-value=2.6e-10  Score=107.95  Aligned_cols=77  Identities=23%  Similarity=0.342  Sum_probs=64.7

Q ss_pred             hcCCCCCeEEEECCCccccHHHHHhhCCC-CEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeE
Q 009871           71 FSGAGRKDVLEVGCGAGNTIFPLIAAYPD-VFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDI  149 (523)
Q Consensus        71 ~~~~~~~~iLDiGcG~G~~~~~l~~~~~~-~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~  149 (523)
                      +...++.+|||+|||+|..+..+++..+. .+++|+|+++.+++.++++.. ...++++..+|+.+.    ++++++||+
T Consensus        35 ~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~-~~~~i~~~~~d~~~~----~~~~~~~D~  109 (223)
T TIGR01934        35 IGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE-LPLNIEFIQADAEAL----PFEDNSFDA  109 (223)
T ss_pred             hccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc-cCCCceEEecchhcC----CCCCCcEEE
Confidence            33347889999999999999999998765 789999999999999998764 345789999999876    456678999


Q ss_pred             EEE
Q 009871          150 VTM  152 (523)
Q Consensus       150 V~~  152 (523)
                      |++
T Consensus       110 i~~  112 (223)
T TIGR01934       110 VTI  112 (223)
T ss_pred             EEE
Confidence            988

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=99.18  E-value=9.2e-10  Score=104.23  Aligned_cols=105  Identities=14%  Similarity=0.175  Sum_probs=82.4

Q ss_pred             CCCCeEEEECCCccHHHHHHHhcCC--CEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcC
Q 009871          334 VAGKKVLELGCGCGGICSMVAAGSA--DLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENN  411 (523)
Q Consensus       334 ~~~~~VLElG~G~G~l~~~~a~~~~--~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~  411 (523)
                      .++.+|||+|||+|..+..++..++  .+++++|+++.+++.++++..   ..   .++.+...+..+.       .+..
T Consensus        38 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~---~~---~~i~~~~~d~~~~-------~~~~  104 (223)
T TIGR01934        38 FKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE---LP---LNIEFIQADAEAL-------PFED  104 (223)
T ss_pred             CCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc---cC---CCceEEecchhcC-------CCCC
Confidence            3778999999999988888887766  489999999999999988765   11   3445554444332       1234


Q ss_pred             CCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEe
Q 009871          412 EGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHI  460 (523)
Q Consensus       412 ~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~  460 (523)
                      ++||+|+++.++.+......+++.+.++|         +|||.++++..
T Consensus       105 ~~~D~i~~~~~~~~~~~~~~~l~~~~~~L---------~~gG~l~~~~~  144 (223)
T TIGR01934       105 NSFDAVTIAFGLRNVTDIQKALREMYRVL---------KPGGRLVILEF  144 (223)
T ss_pred             CcEEEEEEeeeeCCcccHHHHHHHHHHHc---------CCCcEEEEEEe
Confidence            58999999988888888999999999999         67999987654

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=99.17  E-value=1.9e-10  Score=110.97  Aligned_cols=166  Identities=20%  Similarity=0.247  Sum_probs=109.0

Q ss_pred             EEEEEEcCceEEEEEecccccccCCCcccccchhHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEc
Q 009871          286 MIEVNLRDRSFKIEVLSKEYQHTCRSTGLMLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATD  365 (523)
Q Consensus       286 ~~~~~~~~~~~~i~~~~~~~~~~~~~~G~~~W~~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D  365 (523)
                      ...+..+|..+.|....      ...||+-+=..  ..=.++..+   .+|++||++-|-||+++..+++.|+.+|+.+|
T Consensus        85 ~~~v~E~gl~f~v~l~~------gqktGlFlDqR--~nR~~v~~~---~~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD  153 (286)
T PF10672_consen   85 FFTVEENGLKFRVDLTD------GQKTGLFLDQR--ENRKWVRKY---AKGKRVLNLFSYTGGFSVAAAAGGAKEVVSVD  153 (286)
T ss_dssp             EEEEEETTEEEEEESSS------SSSTSS-GGGH--HHHHHHHHH---CTTCEEEEET-TTTHHHHHHHHTTESEEEEEE
T ss_pred             ceEEEECCEEEEEEcCC------CCcceEcHHHH--hhHHHHHHH---cCCCceEEecCCCCHHHHHHHHCCCCEEEEEe
Confidence            34577788888887432      24667532211  111233332   37899999999999999998888888999999


Q ss_pred             CChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCccEEEEccccCCC------CChHHHHHHHHHH
Q 009871          366 GDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIP------EAILPLFATAKEL  439 (523)
Q Consensus       366 ~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~------~~~~~l~~~l~~l  439 (523)
                      .|..+++.+++|+..|++..  .++.+...|.-+.  +..++  ..++||+||.-..-+..      ..+..|+..+.++
T Consensus       154 ~S~~al~~a~~N~~lNg~~~--~~~~~~~~Dvf~~--l~~~~--~~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~l  227 (286)
T PF10672_consen  154 SSKRALEWAKENAALNGLDL--DRHRFIQGDVFKF--LKRLK--KGGRFDLIILDPPSFAKSKFDLERDYKKLLRRAMKL  227 (286)
T ss_dssp             S-HHHHHHHHHHHHHTT-CC--TCEEEEES-HHHH--HHHHH--HTT-EEEEEE--SSEESSTCEHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHcCCCc--cceEEEecCHHHH--HHHHh--cCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999853  4556555443321  21211  24699999986655542      2567788888888


Q ss_pred             hhccCCCCCCCCCcEEEEEEeecCCChhHHHHHHHHcC
Q 009871          440 TASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCG  477 (523)
Q Consensus       440 l~~~~~~~~~~~~g~~~l~~~~r~~~~~~~~~~~~~~g  477 (523)
                      |         +|||.+++|......+.+.|++.+.+.+
T Consensus       228 l---------~~gG~l~~~scs~~i~~~~l~~~~~~~a  256 (286)
T PF10672_consen  228 L---------KPGGLLLTCSCSHHISPDFLLEAVAEAA  256 (286)
T ss_dssp             E---------EEEEEEEEEE--TTS-HHHHHHHHHHHH
T ss_pred             c---------CCCCEEEEEcCCcccCHHHHHHHHHHhC
Confidence            8         6799999999998888887887776544

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=99.17  E-value=4e-10  Score=100.63  Aligned_cols=124  Identities=10%  Similarity=0.110  Sum_probs=92.6

Q ss_pred             CCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCc
Q 009871          335 AGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGF  414 (523)
Q Consensus       335 ~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~f  414 (523)
                      +|.+|||||||.|.+...+......++.++|++++.+..+..    ++       +.+.+.|..+.     +..+++.+|
T Consensus        13 pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~----rG-------v~Viq~Dld~g-----L~~f~d~sF   76 (193)
T PF07021_consen   13 PGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVA----RG-------VSVIQGDLDEG-----LADFPDQSF   76 (193)
T ss_pred             CCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHH----cC-------CCEEECCHHHh-----HhhCCCCCc
Confidence            688999999999988877777666789999999987655543    23       34566665542     345778999


Q ss_pred             cEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee--------------------------------c
Q 009871          415 EVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIF--------------------------------R  462 (523)
Q Consensus       415 D~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~--------------------------------r  462 (523)
                      |+||.++++........+++.+.++-            ...+++++.                                |
T Consensus        77 D~VIlsqtLQ~~~~P~~vL~EmlRVg------------r~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih  144 (193)
T PF07021_consen   77 DYVILSQTLQAVRRPDEVLEEMLRVG------------RRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIH  144 (193)
T ss_pred             cEEehHhHHHhHhHHHHHHHHHHHhc------------CeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCcc
Confidence            99999999998888888888776653            345554443                                2


Q ss_pred             CCChhHHHHHHHHcCCEEEEEcCC
Q 009871          463 QVDEPSMLSAATQCGFRLVDKWPS  486 (523)
Q Consensus       463 ~~~~~~~~~~~~~~gf~~~~~~~~  486 (523)
                      ..+..+|.+.+++.|+++.+...-
T Consensus       145 ~~Ti~DFe~lc~~~~i~I~~~~~~  168 (193)
T PF07021_consen  145 LCTIKDFEDLCRELGIRIEERVFL  168 (193)
T ss_pred             cccHHHHHHHHHHCCCEEEEEEEE
Confidence            234578999999999999887553

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=99.17  E-value=5.6e-10  Score=107.83  Aligned_cols=145  Identities=17%  Similarity=0.139  Sum_probs=102.3

Q ss_pred             chhHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcC-CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEee
Q 009871          317 WESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRL  395 (523)
Q Consensus       317 W~~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l  395 (523)
                      ++.+..+.+.+..... ..+.+|||+|||+|.++..++... ..+|+++|+++.+++.++.|+..++..    ++.+...
T Consensus        70 ~~~~~~l~~~~l~~~~-~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~----~~~~~~~  144 (251)
T TIGR03534        70 RPDTEELVEAALERLK-KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLD----NVTFLQS  144 (251)
T ss_pred             CCChHHHHHHHHHhcc-cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC----eEEEEEC
Confidence            4455555555544332 245689999999998888888764 458999999999999999999987663    4666666


Q ss_pred             ecCCCCcchhhhhhcCCCccEEEEccccCCCC--------------------------ChHHHHHHHHHHhhccCCCCCC
Q 009871          396 EWGNRDHIEAIKEENNEGFEVILGTDVSYIPE--------------------------AILPLFATAKELTASSNKSLRE  449 (523)
Q Consensus       396 dw~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~--------------------------~~~~l~~~l~~ll~~~~~~~~~  449 (523)
                      |+.+.        +..++||+|+++.......                          .+..+++.+.++|         
T Consensus       145 d~~~~--------~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L---------  207 (251)
T TIGR03534       145 DWFEP--------LPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLL---------  207 (251)
T ss_pred             chhcc--------CcCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhc---------
Confidence            65432        2246899999965433211                          1236778888888         


Q ss_pred             CCCcEEEEEEeecCCChhHHHHHHHHcCCEEEEEcC
Q 009871          450 DQQPAFILCHIFRQVDEPSMLSAATQCGFRLVDKWP  485 (523)
Q Consensus       450 ~~~g~~~l~~~~r~~~~~~~~~~~~~~gf~~~~~~~  485 (523)
                      +|||.+++....  .....+.+.+.++||+...+..
T Consensus       208 ~~gG~~~~~~~~--~~~~~~~~~l~~~gf~~v~~~~  241 (251)
T TIGR03534       208 KPGGWLLLEIGY--DQGEAVRALFEAAGFADVETRK  241 (251)
T ss_pred             ccCCEEEEEECc--cHHHHHHHHHHhCCCCceEEEe
Confidence            679999887543  2345678888899998777655

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=99.17  E-value=4.9e-11  Score=107.84  Aligned_cols=73  Identities=26%  Similarity=0.437  Sum_probs=64.1

Q ss_pred             CCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCc-EEEEEeeccCCccCCCCCCCceeEEEE
Q 009871           75 GRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETR-VSTFVCDLISDDLSRQISPSSIDIVTM  152 (523)
Q Consensus        75 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~fD~V~~  152 (523)
                      ...+|||+|||+|.++..+++++|..+|+++|+|+.+++.|+++...+... ++++..|+.+.     .++++||+|++
T Consensus        31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~-----~~~~~fD~Iv~  104 (170)
T PF05175_consen   31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEA-----LPDGKFDLIVS  104 (170)
T ss_dssp             TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTT-----CCTTCEEEEEE
T ss_pred             cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCcccccccccccccc-----ccccceeEEEE
Confidence            678999999999999999999999889999999999999999987655433 99999998753     45789999999

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=99.17  E-value=3.9e-10  Score=100.89  Aligned_cols=140  Identities=17%  Similarity=0.151  Sum_probs=88.9

Q ss_pred             hcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEE
Q 009871           71 FSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIV  150 (523)
Q Consensus        71 ~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V  150 (523)
                      ++...-.++||+|||+|.++..|+.+.  -.++++|+|+.+|+.|+++... .++|+|.++|+...     .|+++||+|
T Consensus        39 Lp~~ry~~alEvGCs~G~lT~~LA~rC--d~LlavDis~~Al~~Ar~Rl~~-~~~V~~~~~dvp~~-----~P~~~FDLI  110 (201)
T PF05401_consen   39 LPRRRYRRALEVGCSIGVLTERLAPRC--DRLLAVDISPRALARARERLAG-LPHVEWIQADVPEF-----WPEGRFDLI  110 (201)
T ss_dssp             HTTSSEEEEEEE--TTSHHHHHHGGGE--EEEEEEES-HHHHHHHHHHTTT--SSEEEEES-TTT--------SS-EEEE
T ss_pred             cCccccceeEecCCCccHHHHHHHHhh--CceEEEeCCHHHHHHHHHhcCC-CCCeEEEECcCCCC-----CCCCCeeEE
Confidence            344555789999999999999999995  4699999999999999998753 36899999999754     578899999


Q ss_pred             EE---ccccccce---eeec--ceEEecCCeEEEe-------------eCHHHHHHHHHhCCCcEEEEEeEeeeeeeccc
Q 009871          151 TM---ERLTGKDQ---KISE--NFYVRGDGTRAFY-------------FSNDFLTSLFKENGFDVEELGLCCKQVENRAR  209 (523)
Q Consensus       151 ~~---~~~~~~~~---~~~~--~~~~~~~g~~~~~-------------~~~~~l~~ll~~~Gf~~~~~~~~~~~~~~~~~  209 (523)
                      ++   .-++....   .+..  .-.+.++|.+++.             +..+.+..+|.+. |..++...+.....    
T Consensus       111 V~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~~c~~wgh~~ga~tv~~~~~~~-~~~~~~~~~~~~~~----  185 (201)
T PF05401_consen  111 VLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHARDANCRRWGHAAGAETVLEMLQEH-LTEVERVECRGGSP----  185 (201)
T ss_dssp             EEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHHTT-S--HHHHHHHHHHH-SEEEEEEEEE-SST----
T ss_pred             EEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCCcccccCcccchHHHHHHHHHH-hhheeEEEEcCCCC----
Confidence            99   12221110   0000  0146777877652             4678889999875 66665544432222    


Q ss_pred             CccceeEEEEEEEEecCC
Q 009871          210 ELVMNRRWVQAVFCSSGG  227 (523)
Q Consensus       210 ~~~~~r~~~~~~~~~~~~  227 (523)
                          ..-++-++|++|.+
T Consensus       186 ----~~~~~~~~~~~~~~  199 (201)
T PF05401_consen  186 ----NEDCLLARFRNPVS  199 (201)
T ss_dssp             ----TSEEEEEEEE--SS
T ss_pred             ----CCceEeeeecCCcC
Confidence                24577888988864

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=99.17  E-value=2.9e-10  Score=105.28  Aligned_cols=126  Identities=17%  Similarity=0.213  Sum_probs=85.0

Q ss_pred             CCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEEE--
Q 009871           75 GRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM--  152 (523)
Q Consensus        75 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~--  152 (523)
                      ++.+|||||||+|.++..+++.. +..++|+|+|++|++.|+++      +++++++|+.+. ++ ++++++||+|++  
T Consensus        13 ~~~~iLDiGcG~G~~~~~l~~~~-~~~~~giD~s~~~i~~a~~~------~~~~~~~d~~~~-l~-~~~~~sfD~Vi~~~   83 (194)
T TIGR02081        13 PGSRVLDLGCGDGELLALLRDEK-QVRGYGIEIDQDGVLACVAR------GVNVIQGDLDEG-LE-AFPDKSFDYVILSQ   83 (194)
T ss_pred             CCCEEEEeCCCCCHHHHHHHhcc-CCcEEEEeCCHHHHHHHHHc------CCeEEEEEhhhc-cc-ccCCCCcCEEEEhh
Confidence            56799999999999998887663 56789999999999998763      367888998641 11 356789999999  


Q ss_pred             ------------ccccccceeee---cce---------EEe-------------cCCeEEEeeCHHHHHHHHHhCCCcEE
Q 009871          153 ------------ERLTGKDQKIS---ENF---------YVR-------------GDGTRAFYFSNDFLTSLFKENGFDVE  195 (523)
Q Consensus       153 ------------~~~~~~~~~~~---~~~---------~~~-------------~~g~~~~~~~~~~l~~ll~~~Gf~~~  195 (523)
                                  ..+.+..+...   .++         +.+             .+.....+++.+++.++++++||+++
T Consensus        84 ~l~~~~d~~~~l~e~~r~~~~~ii~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ll~~~Gf~v~  163 (194)
T TIGR02081        84 TLQATRNPEEILDEMLRVGRHAIVSFPNFGYWRVRWSILTKGRMPVTGELPYDWYNTPNIHFCTIADFEDLCGELNLRIL  163 (194)
T ss_pred             HhHcCcCHHHHHHHHHHhCCeEEEEcCChhHHHHHHHHHhCCccccCCCCCccccCCCCcccCcHHHHHHHHHHCCCEEE
Confidence                        00111111100   000         000             01112346799999999999999998


Q ss_pred             EEEeEeeeeeeccc
Q 009871          196 ELGLCCKQVENRAR  209 (523)
Q Consensus       196 ~~~~~~~~~~~~~~  209 (523)
                      +.......-.++.+
T Consensus       164 ~~~~~~~~~~~~~~  177 (194)
T TIGR02081       164 DRAAFDVDGRGGRE  177 (194)
T ss_pred             EEEEeccccccccc
Confidence            88766555455544

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>TIGR00740 methyltransferase, putative

Probab=99.17  E-value=5.8e-10  Score=106.89  Aligned_cols=108  Identities=12%  Similarity=0.124  Sum_probs=82.5

Q ss_pred             CCCeEEEECCCccHHHHHHHhc---CCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcC
Q 009871          335 AGKKVLELGCGCGGICSMVAAG---SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENN  411 (523)
Q Consensus       335 ~~~~VLElG~G~G~l~~~~a~~---~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~  411 (523)
                      ++.+|||||||+|.++..++..   ...+|+++|+|+.|++.+++++......   .++.+...|+.+.         +.
T Consensus        53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~---~~v~~~~~d~~~~---------~~  120 (239)
T TIGR00740        53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSE---IPVEILCNDIRHV---------EI  120 (239)
T ss_pred             CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCC---CCeEEEECChhhC---------CC
Confidence            6779999999999877777765   2458999999999999999998764432   3466666555432         12


Q ss_pred             CCccEEEEccccCCCC--ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecC
Q 009871          412 EGFEVILGTDVSYIPE--AILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ  463 (523)
Q Consensus       412 ~~fD~Ii~~d~~y~~~--~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~  463 (523)
                      ..+|+|+++.++++..  ....+++.+.+.|         +|||.++++...+.
T Consensus       121 ~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~L---------kpgG~l~i~d~~~~  165 (239)
T TIGR00740       121 KNASMVILNFTLQFLPPEDRIALLTKIYEGL---------NPNGVLVLSEKFRF  165 (239)
T ss_pred             CCCCEEeeecchhhCCHHHHHHHHHHHHHhc---------CCCeEEEEeecccC
Confidence            4689999988776643  4678999999999         77999999876543

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=99.16  E-value=2e-10  Score=112.45  Aligned_cols=119  Identities=19%  Similarity=0.253  Sum_probs=84.8

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCC--CcEEEEEeeccCCccCCCCCCCceeEEE
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQISPSSIDIVT  151 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~V~  151 (523)
                      .++.+|||+|||+|.++..+++.+++++|+|+|+|+.|++.|+++....+  .+++++++|+.+     ++++++||+|+
T Consensus       120 ~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~-----~~~~~~fD~Iv  194 (284)
T TIGR03533       120 EPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFA-----ALPGRKYDLIV  194 (284)
T ss_pred             CCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhh-----ccCCCCccEEE
Confidence            34578999999999999999999888999999999999999999875433  469999999864     23456899999


Q ss_pred             Ec-cccc--------c-ce------------------eeec--ceEEecCCeEEEe--eCHHHHHHHHHhCCCcEEEE
Q 009871          152 ME-RLTG--------K-DQ------------------KISE--NFYVRGDGTRAFY--FSNDFLTSLFKENGFDVEEL  197 (523)
Q Consensus       152 ~~-~~~~--------~-~~------------------~~~~--~~~~~~~g~~~~~--~~~~~l~~ll~~~Gf~~~~~  197 (523)
                      +. .+..        . ..                  .+..  .-+++++|...+-  ++.+.+.+++.++||.-...
T Consensus       195 ~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~~~~~v~~~~~~~~~~~~~~  272 (284)
T TIGR03533       195 SNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGNSMEALEEAYPDVPFTWLEF  272 (284)
T ss_pred             ECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcCHHHHHHHHHhCCCceeee
Confidence            91 1100        0 00                  0000  1256777776642  35667888888888765433

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=99.16  E-value=3.4e-10  Score=111.35  Aligned_cols=101  Identities=23%  Similarity=0.220  Sum_probs=79.1

Q ss_pred             CCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCc
Q 009871          335 AGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGF  414 (523)
Q Consensus       335 ~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~f  414 (523)
                      ++.+|||+|||+|..+..++..+ .+|+++|+|+.+++.+++++..+++     .+.+...|....       .+ +++|
T Consensus       120 ~~~~vLDlGcG~G~~~~~la~~g-~~V~avD~s~~ai~~~~~~~~~~~l-----~v~~~~~D~~~~-------~~-~~~f  185 (287)
T PRK12335        120 KPGKALDLGCGQGRNSLYLALLG-FDVTAVDINQQSLENLQEIAEKENL-----NIRTGLYDINSA-------SI-QEEY  185 (287)
T ss_pred             CCCCEEEeCCCCCHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHHcCC-----ceEEEEechhcc-------cc-cCCc
Confidence            45699999999998888888876 5899999999999999999988665     244444443322       11 4689


Q ss_pred             cEEEEccccCCC--CChHHHHHHHHHHhhccCCCCCCCCCcEEEEE
Q 009871          415 EVILGTDVSYIP--EAILPLFATAKELTASSNKSLREDQQPAFILC  458 (523)
Q Consensus       415 D~Ii~~d~~y~~--~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~  458 (523)
                      |+|+++.++++.  +..+.+++.+.++|         +|||.+++.
T Consensus       186 D~I~~~~vl~~l~~~~~~~~l~~~~~~L---------kpgG~~l~v  222 (287)
T PRK12335        186 DFILSTVVLMFLNRERIPAIIKNMQEHT---------NPGGYNLIV  222 (287)
T ss_pred             cEEEEcchhhhCCHHHHHHHHHHHHHhc---------CCCcEEEEE
Confidence            999999888764  47889999999999         779986653

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=99.16  E-value=5.5e-11  Score=109.98  Aligned_cols=121  Identities=16%  Similarity=0.206  Sum_probs=84.0

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC-CCcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT-ETRVSTFVCDLISDDLSRQISPSSIDIVTM  152 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~-~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~  152 (523)
                      ....+|||||||+|.++..+++++|+..|+|+|+|+.|++.|+++.... ..+++++++|+.++. ...++++++|.|++
T Consensus        15 ~~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~-~~~~~~~~~d~v~~   93 (194)
T TIGR00091        15 NKAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELL-DKFFPDGSLSKVFL   93 (194)
T ss_pred             CCCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHH-HhhCCCCceeEEEE
Confidence            4567999999999999999999999999999999999999998875432 358999999997531 11245679999988


Q ss_pred             ---ccccccce---e------eec-ceEEecCCeEEEeeC----HHHHHHHHHhCC-CcEE
Q 009871          153 ---ERLTGKDQ---K------ISE-NFYVRGDGTRAFYFS----NDFLTSLFKENG-FDVE  195 (523)
Q Consensus       153 ---~~~~~~~~---~------~~~-~~~~~~~g~~~~~~~----~~~l~~ll~~~G-f~~~  195 (523)
                         ..+.+..+   +      +.. ...++++|.+.+...    .+++.+.+.+.| |+..
T Consensus        94 ~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~~~~~~~~~~~~~~~f~~~  154 (194)
T TIGR00091        94 NFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEPLFEDMLKVLSENDLFENT  154 (194)
T ss_pred             ECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhCCCeEec
Confidence               11111100   0      100 236788998876432    334566666665 6654

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=99.15  E-value=5.2e-10  Score=102.98  Aligned_cols=108  Identities=7%  Similarity=0.007  Sum_probs=81.0

Q ss_pred             CCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCC
Q 009871          334 VAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG  413 (523)
Q Consensus       334 ~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~  413 (523)
                      .++.+|||||||+|.++..++++++.+|+++|.++.+++.+++|++.|+..    ++.+...|+.+.     + .....+
T Consensus        52 ~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~----~v~~~~~D~~~~-----l-~~~~~~  121 (199)
T PRK10909         52 IVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAG----NARVVNTNALSF-----L-AQPGTP  121 (199)
T ss_pred             cCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCC----cEEEEEchHHHH-----H-hhcCCC
Confidence            357799999999998888777777889999999999999999999998763    466665554321     1 112347


Q ss_pred             ccEEEEccccCCCCChHHHHHHHHHH--hhccCCCCCCCCCcEEEEEEee
Q 009871          414 FEVILGTDVSYIPEAILPLFATAKEL--TASSNKSLREDQQPAFILCHIF  461 (523)
Q Consensus       414 fD~Ii~~d~~y~~~~~~~l~~~l~~l--l~~~~~~~~~~~~g~~~l~~~~  461 (523)
                      ||+|+... .|.......+++.+...  |         .+++.+|+.+..
T Consensus       122 fDlV~~DP-Py~~g~~~~~l~~l~~~~~l---------~~~~iv~ve~~~  161 (199)
T PRK10909        122 HNVVFVDP-PFRKGLLEETINLLEDNGWL---------ADEALIYVESEV  161 (199)
T ss_pred             ceEEEECC-CCCCChHHHHHHHHHHCCCc---------CCCcEEEEEecC
Confidence            99999854 47777777777777663  5         468888887655

>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]

Probab=99.15  E-value=2.7e-10  Score=107.82  Aligned_cols=164  Identities=14%  Similarity=0.154  Sum_probs=114.4

Q ss_pred             HHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcch
Q 009871          325 AVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIE  404 (523)
Q Consensus       325 ~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~  404 (523)
                      +.+.+|...+.++.|||+|||+|.++..++..|+++|++++.| +|.+.|++-++.|.+.   +++.+......+.+   
T Consensus       167 ~Ail~N~sDF~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS-~MAqyA~~Lv~~N~~~---~rItVI~GKiEdie---  239 (517)
T KOG1500|consen  167 RAILENHSDFQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEAS-EMAQYARKLVASNNLA---DRITVIPGKIEDIE---  239 (517)
T ss_pred             HHHHhcccccCCcEEEEecCCccHHHHHHHHhCcceEEEEehh-HHHHHHHHHHhcCCcc---ceEEEccCcccccc---
Confidence            4455666778999999999999988777777899999999995 6889999999999776   77887766555442   


Q ss_pred             hhhhhcCCCccEEEEccc---cCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee----cCCChhHHHHHHHHcC
Q 009871          405 AIKEENNEGFEVILGTDV---SYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIF----RQVDEPSMLSAATQCG  477 (523)
Q Consensus       405 ~~~~~~~~~fD~Ii~~d~---~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~----r~~~~~~~~~~~~~~g  477 (523)
                          + +++.|+||+-.+   +++...++..+.. +++|         +|.|..+=....    --.++..+.+.+.++.
T Consensus       240 ----L-PEk~DviISEPMG~mL~NERMLEsYl~A-rk~l---------~P~GkMfPT~gdiHlAPFsDE~Ly~E~~nkAn  304 (517)
T KOG1500|consen  240 ----L-PEKVDVIISEPMGYMLVNERMLESYLHA-RKWL---------KPNGKMFPTVGDIHLAPFSDEQLYVEQFNKAN  304 (517)
T ss_pred             ----C-chhccEEEeccchhhhhhHHHHHHHHHH-Hhhc---------CCCCcccCcccceeecccchHHHHHHHHhhhh
Confidence                2 568999998754   4556666665544 4788         445554422111    1123445677888877


Q ss_pred             CEEEEEcCCCCCCCCcchhhcccccCCCCccccCCC-----ceeEEE
Q 009871          478 FRLVDKWPSKNSASPSESIISSWFSENGHEVYLPSP-----ALNIMY  519 (523)
Q Consensus       478 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~i~~  519 (523)
                      |-....+.         +...+-+-...+++.||++     |++||.
T Consensus       305 FWyQq~fy---------GVdLt~L~g~a~~eYFrQPvVDtFD~Rilm  342 (517)
T KOG1500|consen  305 FWYQQNFY---------GVDLTPLYGSAHQEYFRQPVVDTFDIRILM  342 (517)
T ss_pred             hhhhhccc---------cccchhhhhhhhhhhhccccccccccceee
Confidence            77666554         2222224457788888887     778775

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.15  E-value=1.1e-11  Score=101.57  Aligned_cols=98  Identities=16%  Similarity=0.243  Sum_probs=61.4

Q ss_pred             EEECCCccHHHHHHHhc-CCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCccEEE
Q 009871          340 LELGCGCGGICSMVAAG-SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVIL  418 (523)
Q Consensus       340 LElG~G~G~l~~~~a~~-~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~fD~Ii  418 (523)
                      ||+|||+|.++..++.. ...+++++|+|+.|++.+++++......      ....+.+...+...   ....++||+|+
T Consensus         1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~------~~~~~~~~~~~~~~---~~~~~~fD~V~   71 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGND------NFERLRFDVLDLFD---YDPPESFDLVV   71 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---------EEEEE--SSS------CCC----SEEE
T ss_pred             CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCc------ceeEEEeecCChhh---cccccccceeh
Confidence            79999999888887777 3458999999999998888887775432      12223333322111   11125999999


Q ss_pred             EccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEE
Q 009871          419 GTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAF  455 (523)
Q Consensus       419 ~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~  455 (523)
                      ++.++++.+.+..+++.+.++|         +|||.+
T Consensus        72 ~~~vl~~l~~~~~~l~~~~~~L---------~pgG~l   99 (99)
T PF08242_consen   72 ASNVLHHLEDIEAVLRNIYRLL---------KPGGIL   99 (99)
T ss_dssp             EE-TTS--S-HHHHHHHHTTT----------TSS-EE
T ss_pred             hhhhHhhhhhHHHHHHHHHHHc---------CCCCCC
Confidence            9999999999999999999999         678875

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=99.14  E-value=2.1e-09  Score=95.41  Aligned_cols=129  Identities=20%  Similarity=0.154  Sum_probs=98.2

Q ss_pred             CCCCCCCeEEEECCCccHHHHHHHhcCC-CEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhh
Q 009871          331 PTIVAGKKVLELGCGCGGICSMVAAGSA-DLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEE  409 (523)
Q Consensus       331 ~~~~~~~~VLElG~G~G~l~~~~a~~~~-~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~  409 (523)
                      ..+.+|.+++|+|||||.++..++..++ .+|+++|.++++++..++|++..+.    .++.+...+=     .+.+.++
T Consensus        30 L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~----~n~~vv~g~A-----p~~L~~~  100 (187)
T COG2242          30 LRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGV----DNLEVVEGDA-----PEALPDL  100 (187)
T ss_pred             hCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCC----CcEEEEeccc-----hHhhcCC
Confidence            3456889999999999999999886654 4999999999999999999999875    4555554322     2222222


Q ss_pred             cCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhHHHHHHHHcCC-EEEEEc
Q 009871          410 NNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGF-RLVDKW  484 (523)
Q Consensus       410 ~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~~~~~~~~gf-~~~~~~  484 (523)
                        .+||.|+..-    ...++.+++++...|         +++|++++-... -......++.+++.|+ ++.++-
T Consensus       101 --~~~daiFIGG----g~~i~~ile~~~~~l---------~~ggrlV~nait-lE~~~~a~~~~~~~g~~ei~~v~  160 (187)
T COG2242         101 --PSPDAIFIGG----GGNIEEILEAAWERL---------KPGGRLVANAIT-LETLAKALEALEQLGGREIVQVQ  160 (187)
T ss_pred             --CCCCEEEECC----CCCHHHHHHHHHHHc---------CcCCeEEEEeec-HHHHHHHHHHHHHcCCceEEEEE
Confidence              2799999762    278999999999999         679998886543 4445567888999999 776653

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.14  E-value=9e-10  Score=102.76  Aligned_cols=112  Identities=15%  Similarity=0.073  Sum_probs=78.9

Q ss_pred             HHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcC--CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCC
Q 009871          324 AAVLARNPTIVAGKKVLELGCGCGGICSMVAAGS--ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRD  401 (523)
Q Consensus       324 a~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~  401 (523)
                      ..++.+.....++.+|||+|||+|.++..++...  ..+|+++|+++.+++.+++|+..++..   .++.+...|..+. 
T Consensus        61 ~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~---~~v~~~~~d~~~~-  136 (205)
T PRK13944         61 VAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYW---GVVEVYHGDGKRG-  136 (205)
T ss_pred             HHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC---CcEEEEECCcccC-
Confidence            3344444444577899999999998887777653  358999999999999999999987764   3455555443321 


Q ss_pred             cchhhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEe
Q 009871          402 HIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHI  460 (523)
Q Consensus       402 ~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~  460 (523)
                       .     ....+||+|++.....      .+.+.+.+.|         +|||.+++...
T Consensus       137 -~-----~~~~~fD~Ii~~~~~~------~~~~~l~~~L---------~~gG~lvi~~~  174 (205)
T PRK13944        137 -L-----EKHAPFDAIIVTAAAS------TIPSALVRQL---------KDGGVLVIPVE  174 (205)
T ss_pred             -C-----ccCCCccEEEEccCcc------hhhHHHHHhc---------CcCcEEEEEEc
Confidence             1     0135899999885543      2335677888         67999988654

>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=99.13  E-value=1.1e-09  Score=95.31  Aligned_cols=127  Identities=19%  Similarity=0.230  Sum_probs=94.9

Q ss_pred             CCeEEEECCCccHHHHHHHhc--CCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCC
Q 009871          336 GKKVLELGCGCGGICSMVAAG--SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG  413 (523)
Q Consensus       336 ~~~VLElG~G~G~l~~~~a~~--~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~  413 (523)
                      ..-|||||||+|.++..+++.  +...+.+||++|.+++..++.+..|+..     +.+.+-|...        .+..++
T Consensus        44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~-----~~~V~tdl~~--------~l~~~~  110 (209)
T KOG3191|consen   44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVH-----IDVVRTDLLS--------GLRNES  110 (209)
T ss_pred             ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCc-----cceeehhHHh--------hhccCC
Confidence            457999999999888888776  3558999999999999999999998764     2333322221        233478


Q ss_pred             ccEEEEccccCC---------------------CCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhHHHHH
Q 009871          414 FEVILGTDVSYI---------------------PEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSA  472 (523)
Q Consensus       414 fD~Ii~~d~~y~---------------------~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~~~~  472 (523)
                      .|+++-+...--                     .+..+.|+..+..+|         .|.|.+|+....++ ...+++..
T Consensus       111 VDvLvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iL---------Sp~Gv~Ylv~~~~N-~p~ei~k~  180 (209)
T KOG3191|consen  111 VDVLVFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDIL---------SPRGVFYLVALRAN-KPKEILKI  180 (209)
T ss_pred             ccEEEECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhc---------CcCceEEeeehhhc-CHHHHHHH
Confidence            999887632110                     123677888888888         67999999877654 45678889


Q ss_pred             HHHcCCEEEEEcC
Q 009871          473 ATQCGFRLVDKWP  485 (523)
Q Consensus       473 ~~~~gf~~~~~~~  485 (523)
                      ++..||.+...+.
T Consensus       181 l~~~g~~~~~~~~  193 (209)
T KOG3191|consen  181 LEKKGYGVRIAMQ  193 (209)
T ss_pred             HhhcccceeEEEE
Confidence            9999999988887

>PRK06202 hypothetical protein; Provisional

Probab=99.13  E-value=6.5e-10  Score=106.00  Aligned_cols=93  Identities=19%  Similarity=0.223  Sum_probs=66.3

Q ss_pred             CCCCeEEEECCCccHHHHHHHhc----C-CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhh
Q 009871          334 VAGKKVLELGCGCGGICSMVAAG----S-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKE  408 (523)
Q Consensus       334 ~~~~~VLElG~G~G~l~~~~a~~----~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~  408 (523)
                      .++.+|||||||+|.++..++..    + ..+|+++|+++.|++.++++...++.       .+...+-.   .+    +
T Consensus        59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~-------~~~~~~~~---~l----~  124 (232)
T PRK06202         59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGV-------TFRQAVSD---EL----V  124 (232)
T ss_pred             CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCC-------eEEEEecc---cc----c
Confidence            35679999999999887777642    3 24899999999999999887654322       22222211   11    1


Q ss_pred             hcCCCccEEEEccccCCCCC--hHHHHHHHHHHh
Q 009871          409 ENNEGFEVILGTDVSYIPEA--ILPLFATAKELT  440 (523)
Q Consensus       409 ~~~~~fD~Ii~~d~~y~~~~--~~~l~~~l~~ll  440 (523)
                      ..+++||+|+++.++++...  ...+++.+.+++
T Consensus       125 ~~~~~fD~V~~~~~lhh~~d~~~~~~l~~~~r~~  158 (232)
T PRK06202        125 AEGERFDVVTSNHFLHHLDDAEVVRLLADSAALA  158 (232)
T ss_pred             ccCCCccEEEECCeeecCChHHHHHHHHHHHHhc
Confidence            13568999999999988655  456888888887

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=99.13  E-value=3.3e-10  Score=109.43  Aligned_cols=119  Identities=21%  Similarity=0.300  Sum_probs=87.8

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCC-CcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQISPSSIDIVTM  152 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~V~~  152 (523)
                      ..+.+|||+|||+|..+..+++..++.+|+|+|+|+.|++.|+++....+ .+++++++|+.+     ++++++||+|++
T Consensus        86 ~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~-----~~~~~~fD~Vi~  160 (251)
T TIGR03534        86 KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFE-----PLPGGKFDLIVS  160 (251)
T ss_pred             cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhc-----cCcCCceeEEEE
Confidence            34568999999999999999999888899999999999999998764332 468999999874     245689999998


Q ss_pred             -cccc---------cccee-------------------eec--ceEEecCCeEEEee---CHHHHHHHHHhCCCcEEEE
Q 009871          153 -ERLT---------GKDQK-------------------ISE--NFYVRGDGTRAFYF---SNDFLTSLFKENGFDVEEL  197 (523)
Q Consensus       153 -~~~~---------~~~~~-------------------~~~--~~~~~~~g~~~~~~---~~~~l~~ll~~~Gf~~~~~  197 (523)
                       ..+.         .....                   +..  .-+++++|.+.+..   ..+++.++++++||..+.+
T Consensus       161 npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~~~~~~~~~~l~~~gf~~v~~  239 (251)
T TIGR03534       161 NPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGYDQGEAVRALFEAAGFADVET  239 (251)
T ss_pred             CCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECccHHHHHHHHHHhCCCCceEE
Confidence             1110         00000                   000  12568888877643   4567899999999987655

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=99.13  E-value=3.1e-10  Score=102.88  Aligned_cols=103  Identities=22%  Similarity=0.241  Sum_probs=79.0

Q ss_pred             CCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCC
Q 009871          333 IVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNE  412 (523)
Q Consensus       333 ~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~  412 (523)
                      ..+..++||||||.|..+..+|++|. .|+++|.|+.+++.+++-++.++++     +++...|..+..       + +.
T Consensus        28 ~~~~g~~LDlgcG~GRNalyLA~~G~-~VtAvD~s~~al~~l~~~a~~~~l~-----i~~~~~Dl~~~~-------~-~~   93 (192)
T PF03848_consen   28 LLKPGKALDLGCGEGRNALYLASQGF-DVTAVDISPVALEKLQRLAEEEGLD-----IRTRVADLNDFD-------F-PE   93 (192)
T ss_dssp             TS-SSEEEEES-TTSHHHHHHHHTT--EEEEEESSHHHHHHHHHHHHHTT-T-----EEEEE-BGCCBS---------TT
T ss_pred             hcCCCcEEEcCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHhhcCce-----eEEEEecchhcc-------c-cC
Confidence            34678999999999999999999986 6999999999999998888776653     666666665542       2 35


Q ss_pred             CccEEEEccccCC--CCChHHHHHHHHHHhhccCCCCCCCCCcEEEEE
Q 009871          413 GFEVILGTDVSYI--PEAILPLFATAKELTASSNKSLREDQQPAFILC  458 (523)
Q Consensus       413 ~fD~Ii~~d~~y~--~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~  458 (523)
                      .||+|++.-++.+  ++.++.+++.++..+         +|||.+++.
T Consensus        94 ~yD~I~st~v~~fL~~~~~~~i~~~m~~~~---------~pGG~~li~  132 (192)
T PF03848_consen   94 EYDFIVSTVVFMFLQRELRPQIIENMKAAT---------KPGGYNLIV  132 (192)
T ss_dssp             TEEEEEEESSGGGS-GGGHHHHHHHHHHTE---------EEEEEEEEE
T ss_pred             CcCEEEEEEEeccCCHHHHHHHHHHHHhhc---------CCcEEEEEE
Confidence            8999998766544  667888999999999         679987764

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=99.13  E-value=1.7e-10  Score=103.43  Aligned_cols=69  Identities=20%  Similarity=0.323  Sum_probs=56.5

Q ss_pred             CCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871           75 GRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM  152 (523)
Q Consensus        75 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~  152 (523)
                      ...-|||||||+|..+..|...  +...+|+|+|+.|+++|.+..    ..-.++.+|+-.   +-||++++||.|++
T Consensus        50 ~~~~iLDIGCGsGLSg~vL~~~--Gh~wiGvDiSpsML~~a~~~e----~egdlil~DMG~---GlpfrpGtFDg~IS  118 (270)
T KOG1541|consen   50 KSGLILDIGCGSGLSGSVLSDS--GHQWIGVDISPSMLEQAVERE----LEGDLILCDMGE---GLPFRPGTFDGVIS  118 (270)
T ss_pred             CCcEEEEeccCCCcchheeccC--CceEEeecCCHHHHHHHHHhh----hhcCeeeeecCC---CCCCCCCccceEEE
Confidence            4778999999999999888877  577999999999999999742    113577788753   22789999999999

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=99.12  E-value=9.5e-10  Score=103.52  Aligned_cols=113  Identities=16%  Similarity=0.088  Sum_probs=79.6

Q ss_pred             HHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCC--CEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCC
Q 009871          322 LMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSA--DLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGN  399 (523)
Q Consensus       322 ~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~--~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~  399 (523)
                      .+...+.+.....++.+|||+|||+|.++..++....  .+|+++|+++.+++.|++|+..++..    ++.+...|..+
T Consensus        64 ~~~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~----~v~~~~~d~~~  139 (215)
T TIGR00080        64 HMVAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLD----NVIVIVGDGTQ  139 (215)
T ss_pred             HHHHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCC----CeEEEECCccc
Confidence            3334444444456889999999999988888887743  36999999999999999999987753    45665544432


Q ss_pred             CCcchhhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEe
Q 009871          400 RDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHI  460 (523)
Q Consensus       400 ~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~  460 (523)
                      ..       ....+||+|+.....      ..+...+.+.|         +|||++++...
T Consensus       140 ~~-------~~~~~fD~Ii~~~~~------~~~~~~~~~~L---------~~gG~lv~~~~  178 (215)
T TIGR00080       140 GW-------EPLAPYDRIYVTAAG------PKIPEALIDQL---------KEGGILVMPVG  178 (215)
T ss_pred             CC-------cccCCCCEEEEcCCc------ccccHHHHHhc---------CcCcEEEEEEc
Confidence            21       013589999986432      23345677788         67999888653

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=99.12  E-value=2.7e-10  Score=109.06  Aligned_cols=71  Identities=24%  Similarity=0.331  Sum_probs=62.9

Q ss_pred             CCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871           75 GRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM  152 (523)
Q Consensus        75 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~  152 (523)
                      .+.+|||+|||+|..+..+++.++..+|+|+|+|+.|++.++++..   .++.++.+|+.+.    ++++++||+|++
T Consensus        34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~---~~~~~~~~d~~~~----~~~~~~fD~vi~  104 (240)
T TIGR02072        34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS---ENVQFICGDAEKL----PLEDSSFDLIVS  104 (240)
T ss_pred             CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC---CCCeEEecchhhC----CCCCCceeEEEE
Confidence            4578999999999999999999888889999999999999988754   3688999999876    567789999999

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.12  E-value=6.5e-10  Score=105.94  Aligned_cols=134  Identities=18%  Similarity=0.146  Sum_probs=88.1

Q ss_pred             hhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCC--CcEEEEEeeccCCccCCCCCCCce
Q 009871           70 YFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQISPSSI  147 (523)
Q Consensus        70 ~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~f  147 (523)
                      .++...+++|||||||+|.++..++++++ ..|+|||.++....+++......+  ..+......++++    |. .++|
T Consensus       110 ~l~~L~gk~VLDIGC~nGY~~frM~~~GA-~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~L----p~-~~~F  183 (315)
T PF08003_consen  110 HLPDLKGKRVLDIGCNNGYYSFRMLGRGA-KSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDL----PN-LGAF  183 (315)
T ss_pred             hhCCcCCCEEEEecCCCcHHHHHHhhcCC-CEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhc----cc-cCCc
Confidence            34456899999999999999999999964 369999999998877655322221  2233333455544    33 6789


Q ss_pred             eEEEE------------------ccccccceeeecceEEe--------cCCeE------EEeeCHHHHHHHHHhCCCcEE
Q 009871          148 DIVTM------------------ERLTGKDQKISENFYVR--------GDGTR------AFYFSNDFLTSLFKENGFDVE  195 (523)
Q Consensus       148 D~V~~------------------~~~~~~~~~~~~~~~~~--------~~g~~------~~~~~~~~l~~ll~~~Gf~~~  195 (523)
                      |+|+|                  ..+...+.-+-+..++.        |.++.      .|..|...+..+++++||..+
T Consensus       184 DtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~FiPs~~~L~~wl~r~gF~~v  263 (315)
T PF08003_consen  184 DTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNVWFIPSVAALKNWLERAGFKDV  263 (315)
T ss_pred             CEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCceEEeCCHHHHHHHHHHcCCceE
Confidence            99999                  22222333333333332        22221      223499999999999999999


Q ss_pred             EEEeEeeeeeeccc
Q 009871          196 ELGLCCKQVENRAR  209 (523)
Q Consensus       196 ~~~~~~~~~~~~~~  209 (523)
                      ++........+..+
T Consensus       264 ~~v~~~~Tt~~EQR  277 (315)
T PF08003_consen  264 RCVDVSPTTIEEQR  277 (315)
T ss_pred             EEecCccCCHHHhc
Confidence            88776655554444

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=99.12  E-value=8.8e-10  Score=97.30  Aligned_cols=117  Identities=21%  Similarity=0.221  Sum_probs=81.7

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEEE-
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM-  152 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~-  152 (523)
                      -.++.|+|+|||||.++...+-.++ ..|+|+|+++++++.|+++......++.|+++|+.+.       ...||.|++ 
T Consensus        44 l~g~~V~DlG~GTG~La~ga~~lGa-~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~-------~~~~dtvimN  115 (198)
T COG2263          44 LEGKTVLDLGAGTGILAIGAALLGA-SRVLAVDIDPEALEIARANAEELLGDVEFVVADVSDF-------RGKFDTVIMN  115 (198)
T ss_pred             cCCCEEEEcCCCcCHHHHHHHhcCC-cEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhc-------CCccceEEEC
Confidence            4677899999999999988887763 6799999999999999999876677899999999866       567898888 


Q ss_pred             ccccccceeeec-ceE----EecCCeEEEe--eCHHHHHHHHHhCCCcEEEEEe
Q 009871          153 ERLTGKDQKISE-NFY----VRGDGTRAFY--FSNDFLTSLFKENGFDVEELGL  199 (523)
Q Consensus       153 ~~~~~~~~~~~~-~~~----~~~~g~~~~~--~~~~~l~~ll~~~Gf~~~~~~~  199 (523)
                      ..|- ...+-.+ .|.    ...+......  -+.+.+.+...+.|+.+.....
T Consensus       116 PPFG-~~~rhaDr~Fl~~Ale~s~vVYsiH~a~~~~f~~~~~~~~G~~v~~~~~  168 (198)
T COG2263         116 PPFG-SQRRHADRPFLLKALEISDVVYSIHKAGSRDFVEKFAADLGGTVTHIER  168 (198)
T ss_pred             CCCc-cccccCCHHHHHHHHHhhheEEEeeccccHHHHHHHHHhcCCeEEEEEE
Confidence            2220 0000000 000    0001111110  1678899999999998766643

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=99.12  E-value=2.2e-10  Score=97.70  Aligned_cols=79  Identities=19%  Similarity=0.206  Sum_probs=62.4

Q ss_pred             hcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC-CCcEEEEEeeccCCccCCCCCCCceeE
Q 009871           71 FSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT-ETRVSTFVCDLISDDLSRQISPSSIDI  149 (523)
Q Consensus        71 ~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~-~~~v~~~~~d~~~~~~~~~~~~~~fD~  149 (523)
                      +...++.+|||+|||+|..+..++++.|+.+|+|+|+|+.|++.|+++.... ..+++++..|+... +  +...++||+
T Consensus        15 ~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~D~   91 (124)
T TIGR02469        15 LRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEA-L--EDSLPEPDR   91 (124)
T ss_pred             cCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEecccccc-C--hhhcCCCCE
Confidence            3334567999999999999999999988889999999999999999875432 34688888887642 1  122458999


Q ss_pred             EEE
Q 009871          150 VTM  152 (523)
Q Consensus       150 V~~  152 (523)
                      |++
T Consensus        92 v~~   94 (124)
T TIGR02469        92 VFI   94 (124)
T ss_pred             EEE
Confidence            988

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=99.12  E-value=1.9e-10  Score=115.67  Aligned_cols=79  Identities=20%  Similarity=0.311  Sum_probs=64.3

Q ss_pred             hhhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCC----CcEEEEEeeccCCccCCCCCC
Q 009871           69 RYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE----TRVSTFVCDLISDDLSRQISP  144 (523)
Q Consensus        69 ~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~----~~v~~~~~d~~~~~~~~~~~~  144 (523)
                      +.++.....+|||+|||+|.++..+++++|+.+|+++|+|+.|++.|+++...+.    .+++++..|+...     +++
T Consensus       222 ~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~-----~~~  296 (378)
T PRK15001        222 QHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG-----VEP  296 (378)
T ss_pred             HhCCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc-----CCC
Confidence            3444444579999999999999999999999999999999999999998764332    3678888887642     345


Q ss_pred             CceeEEEE
Q 009871          145 SSIDIVTM  152 (523)
Q Consensus       145 ~~fD~V~~  152 (523)
                      .+||+|+|
T Consensus       297 ~~fDlIls  304 (378)
T PRK15001        297 FRFNAVLC  304 (378)
T ss_pred             CCEEEEEE
Confidence            68999999

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=99.10  E-value=2.7e-10  Score=110.33  Aligned_cols=75  Identities=20%  Similarity=0.243  Sum_probs=55.6

Q ss_pred             hhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC--CCcEEEEEeeccCCccCCCCCCCce
Q 009871           70 YFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISDDLSRQISPSSI  147 (523)
Q Consensus        70 ~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~~~~~~~~~~f  147 (523)
                      .+...++.+|||||||-|.++..+++++ +++|+||.+|++..+.|+++....  ..++++..+|..++       +.+|
T Consensus        57 ~~~l~~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~-------~~~f  128 (273)
T PF02353_consen   57 KLGLKPGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDL-------PGKF  128 (273)
T ss_dssp             TTT--TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG----------S-
T ss_pred             HhCCCCCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeecccc-------CCCC
Confidence            3455789999999999999999999998 789999999999999999876543  36799999999865       2389


Q ss_pred             eEEEE
Q 009871          148 DIVTM  152 (523)
Q Consensus       148 D~V~~  152 (523)
                      |.|++
T Consensus       129 D~IvS  133 (273)
T PF02353_consen  129 DRIVS  133 (273)
T ss_dssp             SEEEE
T ss_pred             CEEEE
Confidence            99999

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PLN02672 methionine S-methyltransferase

Probab=99.10  E-value=1.4e-09  Score=121.60  Aligned_cols=152  Identities=20%  Similarity=0.213  Sum_probs=106.2

Q ss_pred             hhHHHHHHHHhcCCC-CCCCCeEEEECCCccHHHHHHHhcCC-CEEEEEcCChHHHHHHHHHHHhcCCC-----------
Q 009871          318 ESAHLMAAVLARNPT-IVAGKKVLELGCGCGGICSMVAAGSA-DLVVATDGDSIALDLLAQNVTANLKP-----------  384 (523)
Q Consensus       318 ~~a~~la~~l~~~~~-~~~~~~VLElG~G~G~l~~~~a~~~~-~~V~~~D~~~~~l~~~~~n~~~n~~~-----------  384 (523)
                      +-+..|.+.|...+. .+++.+|||||||+|.+++.+++... .+|+++|+|+.+++.|++|+..|++.           
T Consensus       100 peTE~lve~L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~  179 (1082)
T PLN02672        100 DWSFTFYEGLNRHPDSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEG  179 (1082)
T ss_pred             hhHHHHHHHHHhcccccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCccccccccccccc
Confidence            455566666655432 24567999999999999999888753 69999999999999999999998653           


Q ss_pred             -CCCCceEEEeeecCCCCcchhhhhhcCCCccEEEEccccCCCC------------------------------------
Q 009871          385 -PFLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPE------------------------------------  427 (523)
Q Consensus       385 -~~~~~v~~~~ldw~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~------------------------------------  427 (523)
                       ....++.+...||.+.-  .   . ...+||+||++...-...                                    
T Consensus       180 ~~l~~rV~f~~sDl~~~~--~---~-~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dG  253 (1082)
T PLN02672        180 KTLLDRVEFYESDLLGYC--R---D-NNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFG  253 (1082)
T ss_pred             ccccccEEEEECchhhhc--c---c-cCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcH
Confidence             11246888887876431  0   0 013699999885421100                                    


Q ss_pred             --ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhHHH-HHHHHcCCEEEEEcCC
Q 009871          428 --AILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSML-SAATQCGFRLVDKWPS  486 (523)
Q Consensus       428 --~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~~-~~~~~~gf~~~~~~~~  486 (523)
                        .+..++....++|         +|+|.+++-...++  .+.+. +.+++.||+...+|..
T Consensus       254 L~~yr~i~~~a~~~L---------~pgG~l~lEiG~~q--~~~v~~~l~~~~gf~~~~~~~~  304 (1082)
T PLN02672        254 LGLIARAVEEGISVI---------KPMGIMIFNMGGRP--GQAVCERLFERRGFRITKLWQT  304 (1082)
T ss_pred             HHHHHHHHHHHHHhc---------cCCCEEEEEECccH--HHHHHHHHHHHCCCCeeEEeee
Confidence              1244556666677         67999888765532  23466 5788899999999985

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.10  E-value=1.6e-09  Score=106.17  Aligned_cols=144  Identities=16%  Similarity=0.141  Sum_probs=99.0

Q ss_pred             hhHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcC-CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeee
Q 009871          318 ESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLE  396 (523)
Q Consensus       318 ~~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ld  396 (523)
                      +.+..+.+++.......++.+|||+|||+|.++..++... ..+|+++|+++.+++.+++|+. +...   .++.+...|
T Consensus        91 ~~te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~-~~~~---~~i~~~~~d  166 (275)
T PRK09328         91 PETEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK-HGLG---ARVEFLQGD  166 (275)
T ss_pred             CCcHHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-hCCC---CcEEEEEcc
Confidence            3444555555543334467799999999998888888775 4689999999999999999998 2222   457777777


Q ss_pred             cCCCCcchhhhhhcCCCccEEEEccccCCC--------------------------CChHHHHHHHHHHhhccCCCCCCC
Q 009871          397 WGNRDHIEAIKEENNEGFEVILGTDVSYIP--------------------------EAILPLFATAKELTASSNKSLRED  450 (523)
Q Consensus       397 w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~--------------------------~~~~~l~~~l~~ll~~~~~~~~~~  450 (523)
                      +.+.        +..++||+|+++......                          +.+..+++.+.++|         +
T Consensus       167 ~~~~--------~~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~L---------k  229 (275)
T PRK09328        167 WFEP--------LPGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYL---------K  229 (275)
T ss_pred             ccCc--------CCCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhc---------c
Confidence            6432        123689999996443211                          12356677777888         6


Q ss_pred             CCcEEEEEEeecCCChhHHHHHHHHcCCEEEEEc
Q 009871          451 QQPAFILCHIFRQVDEPSMLSAATQCGFRLVDKW  484 (523)
Q Consensus       451 ~~g~~~l~~~~r~~~~~~~~~~~~~~gf~~~~~~  484 (523)
                      |||.+++....  .....+.+.+.+.||.-..+.
T Consensus       230 ~gG~l~~e~g~--~~~~~~~~~l~~~gf~~v~~~  261 (275)
T PRK09328        230 PGGWLLLEIGY--DQGEAVRALLAAAGFADVETR  261 (275)
T ss_pred             cCCEEEEEECc--hHHHHHHHHHHhCCCceeEEe
Confidence            79999886533  223457778888999754443

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=99.10  E-value=4e-10  Score=109.65  Aligned_cols=69  Identities=28%  Similarity=0.446  Sum_probs=58.7

Q ss_pred             eEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCC-CcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871           78 DVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQISPSSIDIVTM  152 (523)
Q Consensus        78 ~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~V~~  152 (523)
                      +|||+|||+|.++..++..+|.+.|+|+|+|+.+++.|++|+..++ .++.+++.|+..     +. .++||+|++
T Consensus       113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~-----~~-~~~fDlIVs  182 (280)
T COG2890         113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFE-----PL-RGKFDLIVS  182 (280)
T ss_pred             cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeeccc-----cc-CCceeEEEe
Confidence            7999999999999999999998999999999999999999986654 556666667653     23 338999999

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=99.09  E-value=1.2e-09  Score=109.67  Aligned_cols=137  Identities=16%  Similarity=0.113  Sum_probs=96.0

Q ss_pred             HHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCC
Q 009871          322 LMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRD  401 (523)
Q Consensus       322 ~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~  401 (523)
                      .|+..+.......++.+|||+|||+|.+...++.. +.+|+++|+++.|++.++.|+..++...    +.+...|..+. 
T Consensus       169 ~la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~-~~~v~g~Di~~~~~~~a~~nl~~~g~~~----i~~~~~D~~~l-  242 (329)
T TIGR01177       169 KLARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLM-GAKVIGCDIDWKMVAGARINLEHYGIED----FFVKRGDATKL-  242 (329)
T ss_pred             HHHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHh-CCeEEEEcCCHHHHHHHHHHHHHhCCCC----CeEEecchhcC-
Confidence            34555544334457889999999999877665554 4689999999999999999999887752    44443333221 


Q ss_pred             cchhhhhhcCCCccEEEEccccCCC----------CChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhHHHH
Q 009871          402 HIEAIKEENNEGFEVILGTDVSYIP----------EAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLS  471 (523)
Q Consensus       402 ~~~~~~~~~~~~fD~Ii~~d~~y~~----------~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~~~  471 (523)
                            ++...+||+|+++.. |..          .....+++.+.++|         +|||.+++....+    ..+.+
T Consensus       243 ------~~~~~~~D~Iv~dPP-yg~~~~~~~~~~~~l~~~~l~~~~r~L---------k~gG~lv~~~~~~----~~~~~  302 (329)
T TIGR01177       243 ------PLSSESVDAIATDPP-YGRSTTAAGDGLESLYERSLEEFHEVL---------KSEGWIVYAVPTR----IDLES  302 (329)
T ss_pred             ------CcccCCCCEEEECCC-CcCcccccCCchHHHHHHHHHHHHHHc---------cCCcEEEEEEcCC----CCHHH
Confidence                  223468999999643 331          12578889999999         6799988876542    23556


Q ss_pred             HHHHcCCEEEEEcC
Q 009871          472 AATQCGFRLVDKWP  485 (523)
Q Consensus       472 ~~~~~gf~~~~~~~  485 (523)
                      .++++|| +.....
T Consensus       303 ~~~~~g~-i~~~~~  315 (329)
T TIGR01177       303 LAEDAFR-VVKRFE  315 (329)
T ss_pred             HHhhcCc-chheee
Confidence            7888999 766554

This family is found exclusively in the Archaea.

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=99.09  E-value=5.2e-10  Score=106.14  Aligned_cols=119  Identities=20%  Similarity=0.202  Sum_probs=82.3

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCC-cEEEEEeeccCCccCCCCC-CCceeEEE
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTET-RVSTFVCDLISDDLSRQIS-PSSIDIVT  151 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~-~v~~~~~d~~~~~~~~~~~-~~~fD~V~  151 (523)
                      ..+.+|||+|||+|..+..+++..  .+|+|+|+|+.+++.++++...... ++.+.+.|+.+.    +.. +++||+|+
T Consensus        44 ~~~~~vLdlG~G~G~~~~~l~~~~--~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~----~~~~~~~~D~i~  117 (224)
T TIGR01983        44 LFGLRVLDVGCGGGLLSEPLARLG--ANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDL----AEKGAKSFDVVT  117 (224)
T ss_pred             CCCCeEEEECCCCCHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHh----hcCCCCCccEEE
Confidence            357899999999999999888774  4599999999999999987643333 688888888755    222 47899999


Q ss_pred             E-----------------ccccccceeeecceE----------------E---ecCC--eEEEeeCHHHHHHHHHhCCCc
Q 009871          152 M-----------------ERLTGKDQKISENFY----------------V---RGDG--TRAFYFSNDFLTSLFKENGFD  193 (523)
Q Consensus       152 ~-----------------~~~~~~~~~~~~~~~----------------~---~~~g--~~~~~~~~~~l~~ll~~~Gf~  193 (523)
                      +                 .+.+++++.+.-...                .   .+.+  ....+++.+++.++++++||+
T Consensus       118 ~~~~l~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G~~  197 (224)
T TIGR01983       118 CMEVLEHVPDPQAFIRACAQLLKPGGILFFSTINRTPKSYLLAIVGAEYILRIVPKGTHDWEKFIKPSELTSWLESAGLR  197 (224)
T ss_pred             ehhHHHhCCCHHHHHHHHHHhcCCCcEEEEEecCCCchHHHHHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHHHHcCCe
Confidence            8                 222333333221000                0   0011  112345788999999999999


Q ss_pred             EEEEE
Q 009871          194 VEELG  198 (523)
Q Consensus       194 ~~~~~  198 (523)
                      ++++.
T Consensus       198 i~~~~  202 (224)
T TIGR01983       198 VKDVK  202 (224)
T ss_pred             eeeee
Confidence            98764

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.09  E-value=8e-10  Score=108.32  Aligned_cols=119  Identities=21%  Similarity=0.292  Sum_probs=87.9

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccc-cCCCcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKD-FTETRVSTFVCDLISDDLSRQISPSSIDIVTM  152 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~-~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~  152 (523)
                      .++.+|||+|||+|..+..++...+..+|+|+|+|+.|++.|+++.. ....++.++++|+...     +++++||+|++
T Consensus       107 ~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~-----~~~~~fD~Iv~  181 (275)
T PRK09328        107 KEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEP-----LPGGRFDLIVS  181 (275)
T ss_pred             cCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCc-----CCCCceeEEEE
Confidence            46779999999999999999999888999999999999999999865 3346799999998542     34578999998


Q ss_pred             -ccc---------cccce------eee-------------c--ceEEecCCeEEEee---CHHHHHHHHHhCCCcEEEE
Q 009871          153 -ERL---------TGKDQ------KIS-------------E--NFYVRGDGTRAFYF---SNDFLTSLFKENGFDVEEL  197 (523)
Q Consensus       153 -~~~---------~~~~~------~~~-------------~--~~~~~~~g~~~~~~---~~~~l~~ll~~~Gf~~~~~  197 (523)
                       ..+         .....      .+.             .  .-+++++|...+-.   ..+++.+++.+.||..+.+
T Consensus       182 npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~~~~~~~~~~l~~~gf~~v~~  260 (275)
T PRK09328        182 NPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGYDQGEAVRALLAAAGFADVET  260 (275)
T ss_pred             CCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECchHHHHHHHHHHhCCCceeEE
Confidence             111         00000      000             0  12678888877643   4567899999999985544

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.09  E-value=1.4e-09  Score=102.02  Aligned_cols=114  Identities=18%  Similarity=0.086  Sum_probs=79.4

Q ss_pred             HHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcC-C-CEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeec
Q 009871          320 AHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGS-A-DLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEW  397 (523)
Q Consensus       320 a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~-~-~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw  397 (523)
                      +..+...+.+.....++.+|||+|||+|.++..++... . .+|+++|+++++++.+++|+..++.    .++.+...|-
T Consensus        61 ~p~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~----~~v~~~~gd~  136 (212)
T PRK13942         61 AIHMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGY----DNVEVIVGDG  136 (212)
T ss_pred             cHHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC----CCeEEEECCc
Confidence            34444555554556688999999999998887777763 2 5899999999999999999998765    3455554432


Q ss_pred             CCCCcchhhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEE
Q 009871          398 GNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCH  459 (523)
Q Consensus       398 ~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~  459 (523)
                      ...       .....+||+|++....      ..+...+.+.|         +|||.+++..
T Consensus       137 ~~~-------~~~~~~fD~I~~~~~~------~~~~~~l~~~L---------kpgG~lvi~~  176 (212)
T PRK13942        137 TLG-------YEENAPYDRIYVTAAG------PDIPKPLIEQL---------KDGGIMVIPV  176 (212)
T ss_pred             ccC-------CCcCCCcCEEEECCCc------ccchHHHHHhh---------CCCcEEEEEE
Confidence            211       0124689999986332      22345667788         6799988864

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=99.08  E-value=3.2e-10  Score=100.68  Aligned_cols=97  Identities=24%  Similarity=0.266  Sum_probs=70.2

Q ss_pred             hcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhcccc-CCCcEE-EEEeeccCCccCCCCCCCcee
Q 009871           71 FSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDF-TETRVS-TFVCDLISDDLSRQISPSSID  148 (523)
Q Consensus        71 ~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~-~~~~v~-~~~~d~~~~~~~~~~~~~~fD  148 (523)
                      +.......|||||||||..-.. ..--|...||++|+++.|-+.|.+.+.. ...++. |++++.+++  + .++++++|
T Consensus        72 ~gk~~K~~vLEvgcGtG~Nfkf-y~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l--~-~l~d~s~D  147 (252)
T KOG4300|consen   72 LGKSGKGDVLEVGCGTGANFKF-YPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENL--P-QLADGSYD  147 (252)
T ss_pred             hcccCccceEEecccCCCCccc-ccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcC--c-ccccCCee
Confidence            3334556689999999999633 3334678999999999999999887643 356676 899999877  2 26899999


Q ss_pred             EEEE----------ccccccceeeecceEEecCCeEEE
Q 009871          149 IVTM----------ERLTGKDQKISENFYVRGDGTRAF  176 (523)
Q Consensus       149 ~V~~----------~~~~~~~~~~~~~~~~~~~g~~~~  176 (523)
                      +|++          .+.+...++     .+||+|..++
T Consensus       148 tVV~TlvLCSve~~~k~L~e~~r-----lLRpgG~iif  180 (252)
T KOG4300|consen  148 TVVCTLVLCSVEDPVKQLNEVRR-----LLRPGGRIIF  180 (252)
T ss_pred             eEEEEEEEeccCCHHHHHHHHHH-----hcCCCcEEEE
Confidence            9999          222233333     5777777665

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=99.08  E-value=1.6e-10  Score=104.14  Aligned_cols=140  Identities=20%  Similarity=0.260  Sum_probs=94.6

Q ss_pred             HHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCC
Q 009871          322 LMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRD  401 (523)
Q Consensus       322 ~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~  401 (523)
                      .|++.|.... ..+-+++|||||||| +.+....-.+.+.+++|+|..|++.+.+.=--       ..+...       +
T Consensus       113 ~l~emI~~~~-~g~F~~~lDLGCGTG-L~G~~lR~~a~~ltGvDiS~nMl~kA~eKg~Y-------D~L~~A-------e  176 (287)
T COG4976         113 LLAEMIGKAD-LGPFRRMLDLGCGTG-LTGEALRDMADRLTGVDISENMLAKAHEKGLY-------DTLYVA-------E  176 (287)
T ss_pred             HHHHHHHhcc-CCccceeeecccCcC-cccHhHHHHHhhccCCchhHHHHHHHHhccch-------HHHHHH-------H
Confidence            3445443322 223579999999999 44444444467899999999999988653110       000000       0


Q ss_pred             cchhhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee-------------cC-CChh
Q 009871          402 HIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIF-------------RQ-VDEP  467 (523)
Q Consensus       402 ~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~-------------r~-~~~~  467 (523)
                      ...-+....+++||+|+++||+-+...++.++..+..+|         +|+|.|.++...             |- ....
T Consensus       177 a~~Fl~~~~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L---------~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~  247 (287)
T COG4976         177 AVLFLEDLTQERFDLIVAADVLPYLGALEGLFAGAAGLL---------APGGLFAFSVETLPDDGGFVLGPSQRYAHSES  247 (287)
T ss_pred             HHHHhhhccCCcccchhhhhHHHhhcchhhHHHHHHHhc---------CCCceEEEEecccCCCCCeecchhhhhccchH
Confidence            000011234679999999999999999999999999999         668888776544             11 2345


Q ss_pred             HHHHHHHHcCCEEEEEcCC
Q 009871          468 SMLSAATQCGFRLVDKWPS  486 (523)
Q Consensus       468 ~~~~~~~~~gf~~~~~~~~  486 (523)
                      .+...+...||++..+..+
T Consensus       248 YVr~~l~~~Gl~~i~~~~t  266 (287)
T COG4976         248 YVRALLAASGLEVIAIEDT  266 (287)
T ss_pred             HHHHHHHhcCceEEEeecc
Confidence            6778889999999988664

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=99.08  E-value=5.6e-10  Score=103.66  Aligned_cols=115  Identities=16%  Similarity=0.184  Sum_probs=83.2

Q ss_pred             cCCCCCeEEEECCCccccHHHHHhh-CCCCEEEEEeCCHHHHHHHHhccccC--CCcEEEEEeeccCCccCCCCCCCcee
Q 009871           72 SGAGRKDVLEVGCGAGNTIFPLIAA-YPDVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISDDLSRQISPSSID  148 (523)
Q Consensus        72 ~~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~v~gvD~S~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~~~~~~~~~~fD  148 (523)
                      ...++.+|||+|||+|.++..+++. .++.+|+|+|+|+.|++.|+++....  ..++.++.+|+.+. +  +..+++||
T Consensus        37 ~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~-l--~~~~~~~D  113 (198)
T PRK00377         37 RLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEI-L--FTINEKFD  113 (198)
T ss_pred             CCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhh-H--hhcCCCCC
Confidence            4467889999999999999998876 45678999999999999999876443  35788999988642 1  12246899


Q ss_pred             EEEE-c------cccccceeeecceEEecCCeEEEee----CHHHHHHHHHhCCCcE
Q 009871          149 IVTM-E------RLTGKDQKISENFYVRGDGTRAFYF----SNDFLTSLFKENGFDV  194 (523)
Q Consensus       149 ~V~~-~------~~~~~~~~~~~~~~~~~~g~~~~~~----~~~~l~~ll~~~Gf~~  194 (523)
                      +|++ .      .++....+     .++++|.+++..    +..++...+++.||..
T Consensus       114 ~V~~~~~~~~~~~~l~~~~~-----~LkpgG~lv~~~~~~~~~~~~~~~l~~~g~~~  165 (198)
T PRK00377        114 RIFIGGGSEKLKEIISASWE-----IIKKGGRIVIDAILLETVNNALSALENIGFNL  165 (198)
T ss_pred             EEEECCCcccHHHHHHHHHH-----HcCCCcEEEEEeecHHHHHHHHHHHHHcCCCe
Confidence            9998 1      11111111     577888876632    3456788888899954

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=99.08  E-value=8.1e-10  Score=102.65  Aligned_cols=98  Identities=9%  Similarity=0.069  Sum_probs=69.1

Q ss_pred             CCCeEEEECCCccHHHHHHHhc-CCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCC
Q 009871          335 AGKKVLELGCGCGGICSMVAAG-SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG  413 (523)
Q Consensus       335 ~~~~VLElG~G~G~l~~~~a~~-~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~  413 (523)
                      ++.+|||+|||+|..+..++.. +..+|+++|+|+.|++.|+++..         .+.+...+..+        ++.+++
T Consensus        43 ~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~---------~~~~~~~d~~~--------~~~~~s  105 (204)
T TIGR03587        43 KIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLP---------NINIIQGSLFD--------PFKDNF  105 (204)
T ss_pred             CCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCC---------CCcEEEeeccC--------CCCCCC
Confidence            6779999999999888877776 45689999999999999987642         12333333222        233569


Q ss_pred             ccEEEEccccCCCC--ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEe
Q 009871          414 FEVILGTDVSYIPE--AILPLFATAKELTASSNKSLREDQQPAFILCHI  460 (523)
Q Consensus       414 fD~Ii~~d~~y~~~--~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~  460 (523)
                      ||+|+++.++++..  .+..+++.+.+++           ++.++++..
T Consensus       106 fD~V~~~~vL~hl~p~~~~~~l~el~r~~-----------~~~v~i~e~  143 (204)
T TIGR03587       106 FDLVLTKGVLIHINPDNLPTAYRELYRCS-----------NRYILIAEY  143 (204)
T ss_pred             EEEEEECChhhhCCHHHHHHHHHHHHhhc-----------CcEEEEEEe
Confidence            99999999997753  3455566666555           556666554

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=99.08  E-value=1e-09  Score=105.12  Aligned_cols=103  Identities=11%  Similarity=0.115  Sum_probs=80.5

Q ss_pred             CCCCeEEEECCCccHHHHHHHhcCC-CEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCC
Q 009871          334 VAGKKVLELGCGCGGICSMVAAGSA-DLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNE  412 (523)
Q Consensus       334 ~~~~~VLElG~G~G~l~~~~a~~~~-~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~  412 (523)
                      ..+.+|||||||+|.++..++..+. .+|+++|+++.+++.++.+...        ++.+...|..+.       ++.++
T Consensus        33 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~--------~~~~~~~d~~~~-------~~~~~   97 (240)
T TIGR02072        33 FIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSE--------NVQFICGDAEKL-------PLEDS   97 (240)
T ss_pred             CCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCC--------CCeEEecchhhC-------CCCCC
Confidence            3457999999999988888888764 4799999999999988875431        334444444332       22356


Q ss_pred             CccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEe
Q 009871          413 GFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHI  460 (523)
Q Consensus       413 ~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~  460 (523)
                      +||+|+++.++++..+...+++.+.++|         +|+|.+++...
T Consensus        98 ~fD~vi~~~~l~~~~~~~~~l~~~~~~L---------~~~G~l~~~~~  136 (240)
T TIGR02072        98 SFDLIVSNLALQWCDDLSQALSELARVL---------KPGGLLAFSTF  136 (240)
T ss_pred             ceeEEEEhhhhhhccCHHHHHHHHHHHc---------CCCcEEEEEeC
Confidence            8999999999999888999999999999         67999988653

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.07  E-value=7.2e-10  Score=109.50  Aligned_cols=71  Identities=24%  Similarity=0.374  Sum_probs=61.4

Q ss_pred             CeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCC--CcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871           77 KDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQISPSSIDIVTM  152 (523)
Q Consensus        77 ~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~V~~  152 (523)
                      .+|||+|||+|.++..++..+|+.+|+|+|+|+.|++.|+++....+  .+++++++|+.+.     +++++||+|++
T Consensus       135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~-----l~~~~fDlIvs  207 (307)
T PRK11805        135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAA-----LPGRRYDLIVS  207 (307)
T ss_pred             CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhh-----CCCCCccEEEE
Confidence            68999999999999999999888999999999999999999875432  4699999998642     34568999999

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=99.07  E-value=2.4e-09  Score=111.76  Aligned_cols=143  Identities=16%  Similarity=0.147  Sum_probs=96.8

Q ss_pred             HHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCC
Q 009871          320 AHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGN  399 (523)
Q Consensus       320 a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~  399 (523)
                      +..|.+.+.+.....++.+|||+|||+|.++..++..+ .+|+++|+|+.|++.|++|+..|+..    ++.+...|+.+
T Consensus       282 ~e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~-~~V~gvD~s~~al~~A~~n~~~~~~~----~v~~~~~d~~~  356 (443)
T PRK13168        282 NQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQA-AEVVGVEGVEAMVERARENARRNGLD----NVTFYHANLEE  356 (443)
T ss_pred             HHHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCC----ceEEEEeChHH
Confidence            44555655554444577899999999998888887775 68999999999999999999998763    46777777653


Q ss_pred             CCcchhhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhHHHHHHHHcCCE
Q 009871          400 RDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFR  479 (523)
Q Consensus       400 ~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~~~~~~~~gf~  479 (523)
                      .  +.. ..+...+||+|+. |.-|..  ....++.+.++          ++++.+|++..+.....+  +..+.+.||+
T Consensus       357 ~--l~~-~~~~~~~fD~Vi~-dPPr~g--~~~~~~~l~~~----------~~~~ivyvSCnp~tlaRD--l~~L~~~gY~  418 (443)
T PRK13168        357 D--FTD-QPWALGGFDKVLL-DPPRAG--AAEVMQALAKL----------GPKRIVYVSCNPATLARD--AGVLVEAGYR  418 (443)
T ss_pred             h--hhh-hhhhcCCCCEEEE-CcCCcC--hHHHHHHHHhc----------CCCeEEEEEeChHHhhcc--HHHHhhCCcE
Confidence            2  110 0122457999998 444543  34455555442          457888887655332211  2334467999


Q ss_pred             EEEEcC
Q 009871          480 LVDKWP  485 (523)
Q Consensus       480 ~~~~~~  485 (523)
                      ++++-.
T Consensus       419 l~~i~~  424 (443)
T PRK13168        419 LKRAGM  424 (443)
T ss_pred             EEEEEE
Confidence            998854

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=99.07  E-value=8.8e-10  Score=103.09  Aligned_cols=151  Identities=18%  Similarity=0.254  Sum_probs=92.8

Q ss_pred             hHHHHHHHHhcccccccch--hhhHHHHhhhhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHh-c
Q 009871           42 KKYWDLFYKRHQDRFFKDR--HYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMT-H  118 (523)
Q Consensus        42 ~~~Wd~~y~~~~~~f~~~~--~~l~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~-~  118 (523)
                      .++|+..|+.+...|....  ..|...+.. +...++.+||..|||.|..+..|+++  +.+|+|+|+|+.+|+.|.+ +
T Consensus         3 ~~~W~~~w~~~~~~w~~~~~~p~L~~~~~~-l~~~~~~rvLvPgCG~g~D~~~La~~--G~~VvGvDls~~Ai~~~~~e~   79 (218)
T PF05724_consen    3 PEFWEERWQEGQTPWDQGEPNPALVEYLDS-LALKPGGRVLVPGCGKGYDMLWLAEQ--GHDVVGVDLSPTAIEQAFEEN   79 (218)
T ss_dssp             HHHHHHHHHTT--TT--TTSTHHHHHHHHH-HTTSTSEEEEETTTTTSCHHHHHHHT--TEEEEEEES-HHHHHHHHHHC
T ss_pred             HHHHHHHHhcCCCCCCCCCCCHHHHHHHHh-cCCCCCCeEEEeCCCChHHHHHHHHC--CCeEEEEecCHHHHHHHHHHh
Confidence            4688888888766555322  233333333 44467789999999999999999999  6789999999999999843 2


Q ss_pred             cc------------cCCCcEEEEEeeccCCccCCCCCCCceeEEEE-------------------ccccccceeeecceE
Q 009871          119 KD------------FTETRVSTFVCDLISDDLSRQISPSSIDIVTM-------------------ERLTGKDQKISENFY  167 (523)
Q Consensus       119 ~~------------~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~-------------------~~~~~~~~~~~~~~~  167 (523)
                      ..            ....+++++++|+.+++   +-..++||+|+=                   .+++++++.+.-..+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~---~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l  156 (218)
T PF05724_consen   80 NLEPTVTSVGGFKRYQAGRITIYCGDFFELP---PEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITL  156 (218)
T ss_dssp             TTEEECTTCTTEEEETTSSEEEEES-TTTGG---GSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEE
T ss_pred             ccCCCcccccceeeecCCceEEEEcccccCC---hhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEE
Confidence            21            12356899999998763   112357999987                   333344443110001


Q ss_pred             EecC---CeEEEeeCHHHHHHHHHhCCCcEEEEEe
Q 009871          168 VRGD---GTRAFYFSNDFLTSLFKENGFDVEELGL  199 (523)
Q Consensus       168 ~~~~---g~~~~~~~~~~l~~ll~~~Gf~~~~~~~  199 (523)
                      ..+.   ...-|..+.+++.++|. .+|++..+..
T Consensus       157 ~~~~~~~~GPPf~v~~~ev~~l~~-~~f~i~~l~~  190 (218)
T PF05724_consen  157 EYPQGEMEGPPFSVTEEEVRELFG-PGFEIEELEE  190 (218)
T ss_dssp             ES-CSCSSSSS----HHHHHHHHT-TTEEEEEEEE
T ss_pred             EcCCcCCCCcCCCCCHHHHHHHhc-CCcEEEEEec
Confidence            0000   01112348899999998 7899887766

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>TIGR00095 RNA methyltransferase, RsmD family

Probab=99.07  E-value=8.9e-10  Score=101.02  Aligned_cols=110  Identities=15%  Similarity=0.164  Sum_probs=78.7

Q ss_pred             CCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhc-CC
Q 009871          334 VAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEEN-NE  412 (523)
Q Consensus       334 ~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~-~~  412 (523)
                      ..+.+||||+||+|.++..++++|+++|+++|.++.+++.+++|++.|+..   .++.+...|..     ..+..+. ..
T Consensus        48 ~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~---~~~~~~~~D~~-----~~l~~~~~~~  119 (189)
T TIGR00095        48 IQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSG---EQAEVVRNSAL-----RALKFLAKKP  119 (189)
T ss_pred             cCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCc---ccEEEEehhHH-----HHHHHhhccC
Confidence            478899999999999999999999989999999999999999999999875   34455443332     1111121 23


Q ss_pred             CccEEEEccccCCCCChHHHHHHHHH--HhhccCCCCCCCCCcEEEEEEe
Q 009871          413 GFEVILGTDVSYIPEAILPLFATAKE--LTASSNKSLREDQQPAFILCHI  460 (523)
Q Consensus       413 ~fD~Ii~~d~~y~~~~~~~l~~~l~~--ll~~~~~~~~~~~~g~~~l~~~  460 (523)
                      .+|.||..|..|.......++..+..  +|         +++|.+++-+.
T Consensus       120 ~~~dvv~~DPPy~~~~~~~~l~~l~~~~~l---------~~~~iiv~E~~  160 (189)
T TIGR00095       120 TFDNVIYLDPPFFNGALQALLELCENNWIL---------EDTVLIVVEED  160 (189)
T ss_pred             CCceEEEECcCCCCCcHHHHHHHHHHCCCC---------CCCeEEEEEec
Confidence            44555555888988777777776654  34         34666655443

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=99.06  E-value=4.6e-09  Score=104.51  Aligned_cols=116  Identities=12%  Similarity=0.117  Sum_probs=88.4

Q ss_pred             HHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCC-CEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCc
Q 009871          324 AAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSA-DLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDH  402 (523)
Q Consensus       324 a~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~-~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~  402 (523)
                      .+.+.+.....++.+|||+|||+|.++..+++..+ .+|+++|. |.+++.+++|+...+..   .++.+...|..+.  
T Consensus       138 ~~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~---~rv~~~~~d~~~~--  211 (306)
T TIGR02716       138 IQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVA---DRMRGIAVDIYKE--  211 (306)
T ss_pred             HHHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCcc---ceEEEEecCccCC--
Confidence            34444444555778999999999988888888754 48999998 89999999999988765   5677776655432  


Q ss_pred             chhhhhhcCCCccEEEEccccCCCC--ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee
Q 009871          403 IEAIKEENNEGFEVILGTDVSYIPE--AILPLFATAKELTASSNKSLREDQQPAFILCHIF  461 (523)
Q Consensus       403 ~~~~~~~~~~~fD~Ii~~d~~y~~~--~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~  461 (523)
                           ++  ..+|+|+.+.++++..  ....+++.+.+.|         +|||.+++....
T Consensus       212 -----~~--~~~D~v~~~~~lh~~~~~~~~~il~~~~~~L---------~pgG~l~i~d~~  256 (306)
T TIGR02716       212 -----SY--PEADAVLFCRILYSANEQLSTIMCKKAFDAM---------RSGGRLLILDMV  256 (306)
T ss_pred             -----CC--CCCCEEEeEhhhhcCChHHHHHHHHHHHHhc---------CCCCEEEEEEec
Confidence                 11  2479999888887653  3467999999999         779999988653

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>TIGR00536 hemK_fam HemK family putative methylases

Probab=99.06  E-value=7.8e-10  Score=108.58  Aligned_cols=71  Identities=25%  Similarity=0.459  Sum_probs=61.0

Q ss_pred             CeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCC--CcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871           77 KDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQISPSSIDIVTM  152 (523)
Q Consensus        77 ~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~V~~  152 (523)
                      .+|||+|||+|.++..++..+++.+|+|+|+|+.+++.|+++.....  .+++++++|+.+     ++++++||+|++
T Consensus       116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~-----~~~~~~fDlIvs  188 (284)
T TIGR00536       116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFE-----PLAGQKIDIIVS  188 (284)
T ss_pred             CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhc-----cCcCCCccEEEE
Confidence            68999999999999999999888899999999999999999875432  359999999864     234458999999

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=99.06  E-value=3.8e-09  Score=97.77  Aligned_cols=142  Identities=11%  Similarity=0.134  Sum_probs=96.4

Q ss_pred             CCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCc
Q 009871          335 AGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGF  414 (523)
Q Consensus       335 ~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~f  414 (523)
                      ++.+|||+|||+|.++..++......++++|+++++++.++.+    +       +.+...+..+.  +   .++.+++|
T Consensus        13 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~----~-------~~~~~~d~~~~--l---~~~~~~sf   76 (194)
T TIGR02081        13 PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR----G-------VNVIQGDLDEG--L---EAFPDKSF   76 (194)
T ss_pred             CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc----C-------CeEEEEEhhhc--c---cccCCCCc
Confidence            5679999999999888777766556789999999999887541    1       23333343221  1   11335689


Q ss_pred             cEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEe--------------------------------ec
Q 009871          415 EVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHI--------------------------------FR  462 (523)
Q Consensus       415 D~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~--------------------------------~r  462 (523)
                      |+|+++.++++..+...+++.+.+.++            .++++..                                .+
T Consensus        77 D~Vi~~~~l~~~~d~~~~l~e~~r~~~------------~~ii~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (194)
T TIGR02081        77 DYVILSQTLQATRNPEEILDEMLRVGR------------HAIVSFPNFGYWRVRWSILTKGRMPVTGELPYDWYNTPNIH  144 (194)
T ss_pred             CEEEEhhHhHcCcCHHHHHHHHHHhCC------------eEEEEcCChhHHHHHHHHHhCCccccCCCCCccccCCCCcc
Confidence            999999999998888888888877761            1111100                                01


Q ss_pred             CCChhHHHHHHHHcCCEEEEEcCCCCCCCCcchhhcccccCCCC
Q 009871          463 QVDEPSMLSAATQCGFRLVDKWPSKNSASPSESIISSWFSENGH  506 (523)
Q Consensus       463 ~~~~~~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~  506 (523)
                      ..+..++.+.++++||++.+......+  ..+...-+|||....
T Consensus       145 ~~s~~~~~~ll~~~Gf~v~~~~~~~~~--~~~~~~~~~~~~~~~  186 (194)
T TIGR02081       145 FCTIADFEDLCGELNLRILDRAAFDVD--GRGGREVRWFPNLRG  186 (194)
T ss_pred             cCcHHHHHHHHHHCCCEEEEEEEeccc--cccccccccCccccc
Confidence            234567888999999999887654333  234567789987543

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=99.05  E-value=7.1e-09  Score=96.80  Aligned_cols=137  Identities=11%  Similarity=0.112  Sum_probs=89.3

Q ss_pred             HHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcC-C-CEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCC
Q 009871          324 AAVLARNPTIVAGKKVLELGCGCGGICSMVAAGS-A-DLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRD  401 (523)
Q Consensus       324 a~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~-~-~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~  401 (523)
                      .+......-+.++.+|||||||+|.++..+++.. . .+|+++|+++ |          +..    ..+.+...|+.+..
T Consensus        40 ~~~~~~~~~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~----------~~~----~~v~~i~~D~~~~~  104 (209)
T PRK11188         40 DEIQQSDKLFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M----------DPI----VGVDFLQGDFRDEL  104 (209)
T ss_pred             HHHHHHhccCCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c----------cCC----CCcEEEecCCCChH
Confidence            3333333334578899999999998888888874 2 4899999987 1          111    23667777776543


Q ss_pred             cchhhh-hhcCCCccEEEEccccCCCCC-----------hHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhHH
Q 009871          402 HIEAIK-EENNEGFEVILGTDVSYIPEA-----------ILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSM  469 (523)
Q Consensus       402 ~~~~~~-~~~~~~fD~Ii~~d~~y~~~~-----------~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~  469 (523)
                      .+..+. .+..++||+|+++-..+....           +..+++.+.++|         +|||.+++.... ..+..++
T Consensus       105 ~~~~i~~~~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~L---------kpGG~~vi~~~~-~~~~~~~  174 (209)
T PRK11188        105 VLKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVL---------APGGSFVVKVFQ-GEGFDEY  174 (209)
T ss_pred             HHHHHHHHhCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHc---------CCCCEEEEEEec-CcCHHHH
Confidence            222221 244678999999654444221           246788899999         779999986533 4455567


Q ss_pred             HHHHHHcCCEEEEEcCC
Q 009871          470 LSAATQCGFRLVDKWPS  486 (523)
Q Consensus       470 ~~~~~~~gf~~~~~~~~  486 (523)
                      +..+++ .|.-.++..+
T Consensus       175 l~~l~~-~f~~v~~~Kp  190 (209)
T PRK11188        175 LREIRS-LFTKVKVRKP  190 (209)
T ss_pred             HHHHHh-CceEEEEECC
Confidence            766654 4776666654

>PHA03411 putative methyltransferase; Provisional

Probab=99.04  E-value=4.2e-09  Score=100.09  Aligned_cols=121  Identities=15%  Similarity=0.066  Sum_probs=85.6

Q ss_pred             CCCeEEEECCCccHHHHHHHhcC-CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCC
Q 009871          335 AGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG  413 (523)
Q Consensus       335 ~~~~VLElG~G~G~l~~~~a~~~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~  413 (523)
                      .+.+|||+|||+|.++..++.+. ..+|+++|+++.|++.+++|..         ++.+...|..+.        ....+
T Consensus        64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~---------~v~~v~~D~~e~--------~~~~k  126 (279)
T PHA03411         64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLP---------EAEWITSDVFEF--------ESNEK  126 (279)
T ss_pred             cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCc---------CCEEEECchhhh--------cccCC
Confidence            34689999999998877776654 5689999999999999988632         223322222111        11358


Q ss_pred             ccEEEEccccCCCC--C------------------hHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecC-----CChhH
Q 009871          414 FEVILGTDVSYIPE--A------------------ILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ-----VDEPS  468 (523)
Q Consensus       414 fD~Ii~~d~~y~~~--~------------------~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~-----~~~~~  468 (523)
                      ||+|+++...+...  .                  +..++.....+|         +|+|.+++|+..++     .+..+
T Consensus       127 FDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L---------~p~G~~~~~yss~~~y~~sl~~~~  197 (279)
T PHA03411        127 FDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFI---------VPTGSAGFAYSGRPYYDGTMKSNK  197 (279)
T ss_pred             CcEEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHhee---------cCCceEEEEEeccccccccCCHHH
Confidence            99999988776521  1                  345666666677         56889999887754     34567


Q ss_pred             HHHHHHHcCCEEE
Q 009871          469 MLSAATQCGFRLV  481 (523)
Q Consensus       469 ~~~~~~~~gf~~~  481 (523)
                      ....++++||...
T Consensus       198 y~~~l~~~g~~~~  210 (279)
T PHA03411        198 YLKWSKQTGLVTY  210 (279)
T ss_pred             HHHHHHhcCcEec
Confidence            8889999999874

>PTZ00146 fibrillarin; Provisional

Probab=99.03  E-value=9.6e-09  Score=98.85  Aligned_cols=151  Identities=17%  Similarity=0.169  Sum_probs=98.1

Q ss_pred             cccchhHHH-HHHHHhc---CCCCCCCCeEEEECCCccHHHHHHHhcC--CCEEEEEcCChHHHHHHHHHHHhcCCCCCC
Q 009871          314 LMLWESAHL-MAAVLAR---NPTIVAGKKVLELGCGCGGICSMVAAGS--ADLVVATDGDSIALDLLAQNVTANLKPPFL  387 (523)
Q Consensus       314 ~~~W~~a~~-la~~l~~---~~~~~~~~~VLElG~G~G~l~~~~a~~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~  387 (523)
                      .++|+--.- ||..+..   +..+.++.+|||||||+|..+..++...  ...|+++|+++.|++.+...+...      
T Consensus       107 yR~w~p~rSKlaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r------  180 (293)
T PTZ00146        107 YRVWNPFRSKLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR------  180 (293)
T ss_pred             eeeeCCcccHHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc------
Confidence            678865432 5545533   2345688999999999999888888874  348999999998775554433221      


Q ss_pred             CceEEEeeecCCCCcchhhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCCh-
Q 009871          388 AKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDE-  466 (523)
Q Consensus       388 ~~v~~~~ldw~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~-  466 (523)
                      .++.....|.....   .+ .....+||+|++. + ..++....++..+.++|         +|+|.+++....+..+. 
T Consensus       181 ~NI~~I~~Da~~p~---~y-~~~~~~vDvV~~D-v-a~pdq~~il~~na~r~L---------KpGG~~vI~ika~~id~g  245 (293)
T PTZ00146        181 PNIVPIIEDARYPQ---KY-RMLVPMVDVIFAD-V-AQPDQARIVALNAQYFL---------KNGGHFIISIKANCIDST  245 (293)
T ss_pred             CCCEEEECCccChh---hh-hcccCCCCEEEEe-C-CCcchHHHHHHHHHHhc---------cCCCEEEEEEeccccccC
Confidence            12333333322211   11 1123479999884 4 34566667778899999         77999999765554332 


Q ss_pred             ---hHH----HHHHHHcCCEEEEEcC
Q 009871          467 ---PSM----LSAATQCGFRLVDKWP  485 (523)
Q Consensus       467 ---~~~----~~~~~~~gf~~~~~~~  485 (523)
                         +..    .+.+++.||++.++..
T Consensus       246 ~~pe~~f~~ev~~L~~~GF~~~e~v~  271 (293)
T PTZ00146        246 AKPEVVFASEVQKLKKEGLKPKEQLT  271 (293)
T ss_pred             CCHHHHHHHHHHHHHHcCCceEEEEe
Confidence               233    4668889999888766

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=99.03  E-value=7.2e-10  Score=111.20  Aligned_cols=120  Identities=17%  Similarity=0.107  Sum_probs=86.9

Q ss_pred             cCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC-CCcEEEEEeeccCCccCCCCCCCceeEE
Q 009871           72 SGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT-ETRVSTFVCDLISDDLSRQISPSSIDIV  150 (523)
Q Consensus        72 ~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~-~~~v~~~~~d~~~~~~~~~~~~~~fD~V  150 (523)
                      ...++.+|||+|||+|.++..++..  +..|+|+|+++.|++.|+++.... ..++.+.++|+.++    ++++++||+|
T Consensus       179 ~~~~g~~vLDp~cGtG~~lieaa~~--~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l----~~~~~~~D~I  252 (329)
T TIGR01177       179 RVTEGDRVLDPFCGTGGFLIEAGLM--GAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKL----PLSSESVDAI  252 (329)
T ss_pred             CCCCcCEEEECCCCCCHHHHHHHHh--CCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcC----CcccCCCCEE
Confidence            3456789999999999998877665  677999999999999999886432 23478999999977    5567899999


Q ss_pred             EE-ccc----cccce-------ee-ec-ceEEecCCeEEEeeCH-HHHHHHHHhCCCcEEEEE
Q 009871          151 TM-ERL----TGKDQ-------KI-SE-NFYVRGDGTRAFYFSN-DFLTSLFKENGFDVEELG  198 (523)
Q Consensus       151 ~~-~~~----~~~~~-------~~-~~-~~~~~~~g~~~~~~~~-~~l~~ll~~~Gf~~~~~~  198 (523)
                      ++ ..+    .....       .+ .. .-.++++|.+.+..+. .++.++++++|| ++...
T Consensus       253 v~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~~~~~~~~~~g~-i~~~~  314 (329)
T TIGR01177       253 ATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTRIDLESLAEDAFR-VVKRF  314 (329)
T ss_pred             EECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCCCCHHHHHhhcCc-chhee
Confidence            99 111    00100       00 00 1257889988876644 478899999999 65443

This family is found exclusively in the Archaea.

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.02  E-value=9.5e-11  Score=95.90  Aligned_cols=71  Identities=23%  Similarity=0.368  Sum_probs=45.5

Q ss_pred             EEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCC-CcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871           80 LEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQISPSSIDIVTM  152 (523)
Q Consensus        80 LDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~V~~  152 (523)
                      ||||||+|.++..+++.+|..+|+|+|+|+.|++.|+++..... .+......+..+.  ......++||+|++
T Consensus         1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~fD~V~~   72 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDL--FDYDPPESFDLVVA   72 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS-----CCC----SEEEE
T ss_pred             CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCCh--hhcccccccceehh
Confidence            79999999999999999999999999999999988888764332 3344444444322  11223369999999

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=99.02  E-value=8.5e-10  Score=106.70  Aligned_cols=105  Identities=18%  Similarity=0.241  Sum_probs=82.6

Q ss_pred             HHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcch
Q 009871          325 AVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIE  404 (523)
Q Consensus       325 ~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~  404 (523)
                      ..+.+|..+++++.|||+|||||.++..+|+.|+++|+++|.| ++.+.+++.+..|+..   ..+++......+.    
T Consensus        50 ~~i~~n~~lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S-~ia~~a~~iv~~N~~~---~ii~vi~gkvEdi----  121 (346)
T KOG1499|consen   50 NAILQNKHLFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEAS-SIADFARKIVKDNGLE---DVITVIKGKVEDI----  121 (346)
T ss_pred             HHHhcchhhcCCCEEEEcCCCccHHHHHHHHhCcceEEEEech-HHHHHHHHHHHhcCcc---ceEEEeecceEEE----
Confidence            3455677889999999999999988888888899999999996 5669999999999997   4566655444332    


Q ss_pred             hhhhhcCCCccEEEEccccCC---CCChHHHHHHHHHHh
Q 009871          405 AIKEENNEGFEVILGTDVSYI---PEAILPLFATAKELT  440 (523)
Q Consensus       405 ~~~~~~~~~fD~Ii~~d~~y~---~~~~~~l~~~l~~ll  440 (523)
                         .+|.++.|+|++-++-|.   ...+..++-.=.+.|
T Consensus       122 ---~LP~eKVDiIvSEWMGy~Ll~EsMldsVl~ARdkwL  157 (346)
T KOG1499|consen  122 ---ELPVEKVDIIVSEWMGYFLLYESMLDSVLYARDKWL  157 (346)
T ss_pred             ---ecCccceeEEeehhhhHHHHHhhhhhhhhhhhhhcc
Confidence               234579999998876544   667777777778888

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.02  E-value=1.2e-09  Score=101.90  Aligned_cols=80  Identities=15%  Similarity=0.114  Sum_probs=63.3

Q ss_pred             hhhcCCCCCeEEEECCCccccHHHHHhhC-CCCEEEEEeCCHHHHHHHHhccccCC--CcEEEEEeeccCCccCCCCCCC
Q 009871           69 RYFSGAGRKDVLEVGCGAGNTIFPLIAAY-PDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQISPS  145 (523)
Q Consensus        69 ~~~~~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~v~gvD~S~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~  145 (523)
                      +.+...++.+|||||||+|..+..+++.. +..+|+|+|+++.|++.|+++.....  .+++++.+|+.+.    .....
T Consensus        66 ~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~----~~~~~  141 (205)
T PRK13944         66 ELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRG----LEKHA  141 (205)
T ss_pred             HhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccC----CccCC
Confidence            44454677899999999999998888874 35689999999999999998764332  3589999999754    22356


Q ss_pred             ceeEEEE
Q 009871          146 SIDIVTM  152 (523)
Q Consensus       146 ~fD~V~~  152 (523)
                      +||+|++
T Consensus       142 ~fD~Ii~  148 (205)
T PRK13944        142 PFDAIIV  148 (205)
T ss_pred             CccEEEE
Confidence            8999988

>PRK14967 putative methyltransferase; Provisional

Probab=99.02  E-value=2.3e-09  Score=101.53  Aligned_cols=118  Identities=19%  Similarity=0.166  Sum_probs=83.4

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEEEc
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTME  153 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~  153 (523)
                      .++.+|||+|||+|.++..+++.. ..+|+|+|+|+.|++.|+++....+.++.++++|+...     +++++||+|++.
T Consensus        35 ~~~~~vLDlGcG~G~~~~~la~~~-~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~-----~~~~~fD~Vi~n  108 (223)
T PRK14967         35 GPGRRVLDLCTGSGALAVAAAAAG-AGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARA-----VEFRPFDVVVSN  108 (223)
T ss_pred             CCCCeEEEecCCHHHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhh-----ccCCCeeEEEEC
Confidence            456899999999999999888763 34799999999999999988754445678888888642     456789999991


Q ss_pred             -cccccce-----------------------eee--cceEEecCCeEEEee----CHHHHHHHHHhCCCcEEEE
Q 009871          154 -RLTGKDQ-----------------------KIS--ENFYVRGDGTRAFYF----SNDFLTSLFKENGFDVEEL  197 (523)
Q Consensus       154 -~~~~~~~-----------------------~~~--~~~~~~~~g~~~~~~----~~~~l~~ll~~~Gf~~~~~  197 (523)
                       .+.....                       .+.  ...+++++|.+++..    ...++.+.+++.||.....
T Consensus       109 pPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~  182 (223)
T PRK14967        109 PPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELSGVERTLTRLSEAGLDAEVV  182 (223)
T ss_pred             CCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecccCHHHHHHHHHHCCCCeEEE
Confidence             1111000                       000  012678888877632    4567888888888875433

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=99.01  E-value=1.1e-08  Score=94.98  Aligned_cols=136  Identities=15%  Similarity=0.134  Sum_probs=94.8

Q ss_pred             CcccccchhHHHHHHHHhc--CCCCCCCCeEEEECCCccHHHHHHHhc-CCCEEEEEcCChHHHHHHHHHHHhcCCCCCC
Q 009871          311 STGLMLWESAHLMAAVLAR--NPTIVAGKKVLELGCGCGGICSMVAAG-SADLVVATDGDSIALDLLAQNVTANLKPPFL  387 (523)
Q Consensus       311 ~~G~~~W~~a~~la~~l~~--~~~~~~~~~VLElG~G~G~l~~~~a~~-~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~  387 (523)
                      +.-.+.|+....+-..+..  +...+++..+||+|||+|.+++.+++. +...|+++|.|+.++.+|.+|++.+++.   
T Consensus       122 gVlIPRpETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~---  198 (328)
T KOG2904|consen  122 GVLIPRPETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLS---  198 (328)
T ss_pred             CeeecCccHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhc---
Confidence            3336788887665544443  334456678999999999999888776 5568999999999999999999999987   


Q ss_pred             CceEEEe----eecCCCCcchhhhhhcCCCccEEEEccccCCCC--------------------------ChHHHHHHHH
Q 009871          388 AKLITKR----LEWGNRDHIEAIKEENNEGFEVILGTDVSYIPE--------------------------AILPLFATAK  437 (523)
Q Consensus       388 ~~v~~~~----ldw~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~--------------------------~~~~l~~~l~  437 (523)
                      +++.+..    .+|.+..      ++..+++|+|+++...-..+                          .+-.++.-+.
T Consensus       199 g~i~v~~~~me~d~~~~~------~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~  272 (328)
T KOG2904|consen  199 GRIEVIHNIMESDASDEH------PLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLAT  272 (328)
T ss_pred             CceEEEeccccccccccc------ccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhH
Confidence            5666653    3444432      12357899999986432222                          2334445556


Q ss_pred             HHhhccCCCCCCCCCcEEEEEEeecCC
Q 009871          438 ELTASSNKSLREDQQPAFILCHIFRQV  464 (523)
Q Consensus       438 ~ll~~~~~~~~~~~~g~~~l~~~~r~~  464 (523)
                      ++|         +|||.+++....|..
T Consensus       273 R~L---------q~gg~~~le~~~~~~  290 (328)
T KOG2904|consen  273 RML---------QPGGFEQLELVERKE  290 (328)
T ss_pred             hhc---------ccCCeEEEEeccccc
Confidence            666         668888887775543

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.00  E-value=1.6e-09  Score=101.53  Aligned_cols=80  Identities=15%  Similarity=0.066  Sum_probs=65.0

Q ss_pred             hhhcCCCCCeEEEECCCccccHHHHHhhC-CCCEEEEEeCCHHHHHHHHhccccC-CCcEEEEEeeccCCccCCCCCCCc
Q 009871           69 RYFSGAGRKDVLEVGCGAGNTIFPLIAAY-PDVFVYACDFSPRAVNLVMTHKDFT-ETRVSTFVCDLISDDLSRQISPSS  146 (523)
Q Consensus        69 ~~~~~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~v~gvD~S~~~l~~a~~~~~~~-~~~v~~~~~d~~~~~~~~~~~~~~  146 (523)
                      +.+...++.+|||||||+|..+..+++.. ++.+|+|+|+++.|++.|+++.... ..+++++++|....    ..+.+.
T Consensus        70 ~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~----~~~~~~  145 (212)
T PRK13942         70 ELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLG----YEENAP  145 (212)
T ss_pred             HHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccC----CCcCCC
Confidence            34455678999999999999999888873 4578999999999999999976433 35799999998754    334578


Q ss_pred             eeEEEE
Q 009871          147 IDIVTM  152 (523)
Q Consensus       147 fD~V~~  152 (523)
                      ||+|++
T Consensus       146 fD~I~~  151 (212)
T PRK13942        146 YDRIYV  151 (212)
T ss_pred             cCEEEE
Confidence            999988

>PRK07402 precorrin-6B methylase; Provisional

Probab=99.00  E-value=1.1e-08  Score=94.89  Aligned_cols=128  Identities=9%  Similarity=0.025  Sum_probs=86.2

Q ss_pred             CCCCCCeEEEECCCccHHHHHHHhcC-CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhc
Q 009871          332 TIVAGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEEN  410 (523)
Q Consensus       332 ~~~~~~~VLElG~G~G~l~~~~a~~~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~  410 (523)
                      ...++.+|||+|||+|.++..++... ..+|+++|+++.+++.+++|+..++..    ++.+...|..+.  +   ..+ 
T Consensus        37 ~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~----~v~~~~~d~~~~--~---~~~-  106 (196)
T PRK07402         37 RLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVK----NVEVIEGSAPEC--L---AQL-  106 (196)
T ss_pred             CCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC----CeEEEECchHHH--H---hhC-
Confidence            44577899999999998888777653 468999999999999999999987653    355544333211  1   111 


Q ss_pred             CCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhHHHHHHH---HcCCEEEEE
Q 009871          411 NEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAAT---QCGFRLVDK  483 (523)
Q Consensus       411 ~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~~~~~~---~~gf~~~~~  483 (523)
                      ...+|.|+..    ....+..+++.+.++|         +|||.+++...... ......+.++   ..++++.++
T Consensus       107 ~~~~d~v~~~----~~~~~~~~l~~~~~~L---------kpgG~li~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  168 (196)
T PRK07402        107 APAPDRVCIE----GGRPIKEILQAVWQYL---------KPGGRLVATASSLE-GLYAISEGLAQLQARNIEVVQA  168 (196)
T ss_pred             CCCCCEEEEE----CCcCHHHHHHHHHHhc---------CCCeEEEEEeecHH-HHHHHHHHHHhcCCCCceEEEE
Confidence            2346766542    2345788999999999         67999888765421 2222334444   457777666

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=99.00  E-value=5.5e-10  Score=91.71  Aligned_cols=90  Identities=19%  Similarity=0.308  Sum_probs=65.2

Q ss_pred             EEEECCCccHHHHHHHhcC----CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCc
Q 009871          339 VLELGCGCGGICSMVAAGS----ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGF  414 (523)
Q Consensus       339 VLElG~G~G~l~~~~a~~~----~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~f  414 (523)
                      |||||||+|.....++...    ..+++++|+|++|++.++++....+.     .+++...|..+.       +...++|
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~-----~~~~~~~D~~~l-------~~~~~~~   68 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP-----KVRFVQADARDL-------PFSDGKF   68 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT-----TSEEEESCTTCH-------HHHSSSE
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC-----ceEEEECCHhHC-------cccCCCe
Confidence            7999999998888888764    26999999999999999998877433     456666665431       2235699


Q ss_pred             cEEEEccc-cCC--CCChHHHHHHHHHHh
Q 009871          415 EVILGTDV-SYI--PEAILPLFATAKELT  440 (523)
Q Consensus       415 D~Ii~~d~-~y~--~~~~~~l~~~l~~ll  440 (523)
                      |+|+++.. +.+  .+....+++.+.++|
T Consensus        69 D~v~~~~~~~~~~~~~~~~~ll~~~~~~l   97 (101)
T PF13649_consen   69 DLVVCSGLSLHHLSPEELEALLRRIARLL   97 (101)
T ss_dssp             EEEEE-TTGGGGSSHHHHHHHHHHHHHTE
T ss_pred             eEEEEcCCccCCCCHHHHHHHHHHHHHHh
Confidence            99999544 433  446888999999998

>PRK14968 putative methyltransferase; Provisional

Probab=98.99  E-value=3.1e-09  Score=97.77  Aligned_cols=117  Identities=20%  Similarity=0.295  Sum_probs=83.7

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCC-c--EEEEEeeccCCccCCCCCCCceeEE
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTET-R--VSTFVCDLISDDLSRQISPSSIDIV  150 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~-~--v~~~~~d~~~~~~~~~~~~~~fD~V  150 (523)
                      .++.+|||+|||+|.++..++++  +.+|+|+|+|+.|++.++++...... +  +.++++|+.+     ++++++||+|
T Consensus        22 ~~~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-----~~~~~~~d~v   94 (188)
T PRK14968         22 KKGDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFE-----PFRGDKFDVI   94 (188)
T ss_pred             cCCCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccc-----cccccCceEE
Confidence            46778999999999999999988  57899999999999999887643322 2  8888988864     2445689999


Q ss_pred             EE-cccccc----------------c-------e-eeec-ceEEecCCeEEEe----eCHHHHHHHHHhCCCcEEEE
Q 009871          151 TM-ERLTGK----------------D-------Q-KISE-NFYVRGDGTRAFY----FSNDFLTSLFKENGFDVEEL  197 (523)
Q Consensus       151 ~~-~~~~~~----------------~-------~-~~~~-~~~~~~~g~~~~~----~~~~~l~~ll~~~Gf~~~~~  197 (523)
                      ++ ..+...                +       . .+.. ..+++++|...+.    ...+++.+++.++||.+..+
T Consensus        95 i~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~~~~l~~~~~~~g~~~~~~  171 (188)
T PRK14968         95 LFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTGEDEVLEYLEKLGFEAEVV  171 (188)
T ss_pred             EECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccCCHHHHHHHHHHCCCeeeee
Confidence            98 111110                0       0 0000 1257788876553    24678999999999987544

>PRK05785 hypothetical protein; Provisional

Probab=98.99  E-value=4e-09  Score=99.75  Aligned_cols=87  Identities=18%  Similarity=0.160  Sum_probs=68.6

Q ss_pred             CCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCc
Q 009871          335 AGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGF  414 (523)
Q Consensus       335 ~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~f  414 (523)
                      ++.+|||||||||.++..++.....+|+++|+|++|++.++.+.         ..   ...+..+   +    ++++++|
T Consensus        51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~~---------~~---~~~d~~~---l----p~~d~sf  111 (226)
T PRK05785         51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVAD---------DK---VVGSFEA---L----PFRDKSF  111 (226)
T ss_pred             CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhcc---------ce---EEechhh---C----CCCCCCE
Confidence            36799999999998888887774458999999999999987531         11   1112111   1    3456799


Q ss_pred             cEEEEccccCCCCChHHHHHHHHHHh
Q 009871          415 EVILGTDVSYIPEAILPLFATAKELT  440 (523)
Q Consensus       415 D~Ii~~d~~y~~~~~~~l~~~l~~ll  440 (523)
                      |+|+++.++.+..+.+.+++.+.++|
T Consensus       112 D~v~~~~~l~~~~d~~~~l~e~~RvL  137 (226)
T PRK05785        112 DVVMSSFALHASDNIEKVIAEFTRVS  137 (226)
T ss_pred             EEEEecChhhccCCHHHHHHHHHHHh
Confidence            99999999999999999999999999

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=98.99  E-value=1.9e-09  Score=101.54  Aligned_cols=81  Identities=17%  Similarity=0.095  Sum_probs=65.0

Q ss_pred             hhhhcCCCCCeEEEECCCccccHHHHHhhC-CCCEEEEEeCCHHHHHHHHhccccC-CCcEEEEEeeccCCccCCCCCCC
Q 009871           68 GRYFSGAGRKDVLEVGCGAGNTIFPLIAAY-PDVFVYACDFSPRAVNLVMTHKDFT-ETRVSTFVCDLISDDLSRQISPS  145 (523)
Q Consensus        68 ~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~v~gvD~S~~~l~~a~~~~~~~-~~~v~~~~~d~~~~~~~~~~~~~  145 (523)
                      .+.+...++.+|||||||+|..+..|++.. ++.+|+|+|+++.|++.|+++.... ..+++++++|+...    ....+
T Consensus        70 ~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~----~~~~~  145 (215)
T TIGR00080        70 TELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQG----WEPLA  145 (215)
T ss_pred             HHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccC----CcccC
Confidence            344555778999999999999999999884 3578999999999999999876433 35799999998754    22346


Q ss_pred             ceeEEEE
Q 009871          146 SIDIVTM  152 (523)
Q Consensus       146 ~fD~V~~  152 (523)
                      .||+|++
T Consensus       146 ~fD~Ii~  152 (215)
T TIGR00080       146 PYDRIYV  152 (215)
T ss_pred             CCCEEEE
Confidence            8999987

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=98.99  E-value=1.9e-09  Score=103.49  Aligned_cols=116  Identities=17%  Similarity=0.195  Sum_probs=82.0

Q ss_pred             CCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEEE-cc
Q 009871           76 RKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM-ER  154 (523)
Q Consensus        76 ~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~-~~  154 (523)
                      ..+|||+|||+|.++..+++..++.+|+|+|+|+.|++.|+++...++  ++++++|+.+. ++.. ..++||+|++ ..
T Consensus        87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~--~~~~~~D~~~~-l~~~-~~~~fDlVv~NPP  162 (251)
T TIGR03704        87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG--GTVHEGDLYDA-LPTA-LRGRVDILAANAP  162 (251)
T ss_pred             CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC--CEEEEeechhh-cchh-cCCCEeEEEECCC
Confidence            458999999999999999988888899999999999999999875432  57899998642 1111 1357999999 11


Q ss_pred             ccc--------c-------ce-------------eeec--ceEEecCCeEEEee---CHHHHHHHHHhCCCcEE
Q 009871          155 LTG--------K-------DQ-------------KISE--NFYVRGDGTRAFYF---SNDFLTSLFKENGFDVE  195 (523)
Q Consensus       155 ~~~--------~-------~~-------------~~~~--~~~~~~~g~~~~~~---~~~~l~~ll~~~Gf~~~  195 (523)
                      +..        +       ..             .+..  ..+++++|.+++-+   ..+++..++++.||...
T Consensus       163 y~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~~~~~v~~~l~~~g~~~~  236 (251)
T TIGR03704       163 YVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSERQAPLAVEAFARAGLIAR  236 (251)
T ss_pred             CCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcchHHHHHHHHHHCCCCce
Confidence            100        0       00             0000  13678888877654   45667888888998753

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>PLN03075 nicotianamine synthase; Provisional

Probab=98.99  E-value=1.3e-09  Score=105.32  Aligned_cols=75  Identities=17%  Similarity=0.107  Sum_probs=59.0

Q ss_pred             CCCCeEEEECCCccccHHH--HHhhCCCCEEEEEeCCHHHHHHHHhcccc-C--CCcEEEEEeeccCCccCCCCCCCcee
Q 009871           74 AGRKDVLEVGCGAGNTIFP--LIAAYPDVFVYACDFSPRAVNLVMTHKDF-T--ETRVSTFVCDLISDDLSRQISPSSID  148 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~--l~~~~~~~~v~gvD~S~~~l~~a~~~~~~-~--~~~v~~~~~d~~~~~~~~~~~~~~fD  148 (523)
                      ..+++|+|||||.|.++..  +++.+|+.+++|+|++++|++.|++.... .  ..+++|.++|+.+.    +...+.||
T Consensus       122 ~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~----~~~l~~FD  197 (296)
T PLN03075        122 GVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDV----TESLKEYD  197 (296)
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhc----ccccCCcC
Confidence            4788999999998855333  33458899999999999999999997732 1  36799999999864    22246899


Q ss_pred             EEEE
Q 009871          149 IVTM  152 (523)
Q Consensus       149 ~V~~  152 (523)
                      +|++
T Consensus       198 lVF~  201 (296)
T PLN03075        198 VVFL  201 (296)
T ss_pred             EEEE
Confidence            9999

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=98.98  E-value=3.8e-09  Score=101.79  Aligned_cols=109  Identities=21%  Similarity=0.311  Sum_probs=74.6

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEEEc
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTME  153 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~  153 (523)
                      .++.+|||+|||+|.++..+++.++ .+|+|+|+|+.|++.|+++...+.....   ..+.       ..+.+||+|++.
T Consensus       118 ~~~~~VLDiGcGsG~l~i~~~~~g~-~~v~giDis~~~l~~A~~n~~~~~~~~~---~~~~-------~~~~~fD~Vvan  186 (250)
T PRK00517        118 LPGKTVLDVGCGSGILAIAAAKLGA-KKVLAVDIDPQAVEAARENAELNGVELN---VYLP-------QGDLKADVIVAN  186 (250)
T ss_pred             CCCCEEEEeCCcHHHHHHHHHHcCC-CeEEEEECCHHHHHHHHHHHHHcCCCce---EEEc-------cCCCCcCEEEEc
Confidence            4678999999999999988776643 3699999999999999998654321100   0111       112279999981


Q ss_pred             -------cccccceeeecceEEecCCeEEEe----eCHHHHHHHHHhCCCcEEEEE
Q 009871          154 -------RLTGKDQKISENFYVRGDGTRAFY----FSNDFLTSLFKENGFDVEELG  198 (523)
Q Consensus       154 -------~~~~~~~~~~~~~~~~~~g~~~~~----~~~~~l~~ll~~~Gf~~~~~~  198 (523)
                             .+.+...+     .++++|.++..    ...+++.+.+++.||.++...
T Consensus       187 i~~~~~~~l~~~~~~-----~LkpgG~lilsgi~~~~~~~v~~~l~~~Gf~~~~~~  237 (250)
T PRK00517        187 ILANPLLELAPDLAR-----LLKPGGRLILSGILEEQADEVLEAYEEAGFTLDEVL  237 (250)
T ss_pred             CcHHHHHHHHHHHHH-----hcCCCcEEEEEECcHhhHHHHHHHHHHCCCEEEEEE
Confidence                   12222222     57788877653    246678899999999987653

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=98.98  E-value=9.4e-09  Score=91.32  Aligned_cols=118  Identities=13%  Similarity=0.128  Sum_probs=84.1

Q ss_pred             hcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccc-cCCCcEEEEEeeccCCccCCCCCCC-cee
Q 009871           71 FSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKD-FTETRVSTFVCDLISDDLSRQISPS-SID  148 (523)
Q Consensus        71 ~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~-~~~~~v~~~~~d~~~~~~~~~~~~~-~fD  148 (523)
                      +.+.++.+++|||||||..+..++..+|.++|+|||-++++++..++|.. ...+++..+.+|+-+.     +++. +||
T Consensus        30 L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~-----L~~~~~~d  104 (187)
T COG2242          30 LRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEA-----LPDLPSPD  104 (187)
T ss_pred             hCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHh-----hcCCCCCC
Confidence            44578899999999999999999977999999999999999999999874 3468899999998754     1222 799


Q ss_pred             EEEE---c---cccccceeeecceEEecCCeEEEe-eC---HHHHHHHHHhCCC-cEEEEE
Q 009871          149 IVTM---E---RLTGKDQKISENFYVRGDGTRAFY-FS---NDFLTSLFKENGF-DVEELG  198 (523)
Q Consensus       149 ~V~~---~---~~~~~~~~~~~~~~~~~~g~~~~~-~~---~~~l~~ll~~~Gf-~~~~~~  198 (523)
                      .||.   .   .++....     ..++++|..+.- -+   .....+.+++.|+ +++.+.
T Consensus       105 aiFIGGg~~i~~ile~~~-----~~l~~ggrlV~naitlE~~~~a~~~~~~~g~~ei~~v~  160 (187)
T COG2242         105 AIFIGGGGNIEEILEAAW-----ERLKPGGRLVANAITLETLAKALEALEQLGGREIVQVQ  160 (187)
T ss_pred             EEEECCCCCHHHHHHHHH-----HHcCcCCeEEEEeecHHHHHHHHHHHHHcCCceEEEEE
Confidence            9988   0   1101111     134555655432 23   3445677788898 554443

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=98.98  E-value=1.8e-09  Score=105.00  Aligned_cols=112  Identities=21%  Similarity=0.257  Sum_probs=74.5

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEEE-
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM-  152 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~-  152 (523)
                      .++.+|||+|||+|.++...++.+ ..+|+|+|++|.+++.|++|...++..-++.....  .    ....+.||+|++ 
T Consensus       160 ~~g~~vLDvG~GSGILaiaA~klG-A~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~~--~----~~~~~~~dlvvAN  232 (295)
T PF06325_consen  160 KPGKRVLDVGCGSGILAIAAAKLG-AKKVVAIDIDPLAVEAARENAELNGVEDRIEVSLS--E----DLVEGKFDLVVAN  232 (295)
T ss_dssp             STTSEEEEES-TTSHHHHHHHHTT-BSEEEEEESSCHHHHHHHHHHHHTT-TTCEEESCT--S----CTCCS-EEEEEEE
T ss_pred             cCCCEEEEeCCcHHHHHHHHHHcC-CCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEEe--c----ccccccCCEEEEC
Confidence            567899999999999998888875 34799999999999999999865542223322222  1    233589999999 


Q ss_pred             ------ccccccceeeecceEEecCCeEEE----eeCHHHHHHHHHhCCCcEEEEE
Q 009871          153 ------ERLTGKDQKISENFYVRGDGTRAF----YFSNDFLTSLFKENGFDVEELG  198 (523)
Q Consensus       153 ------~~~~~~~~~~~~~~~~~~~g~~~~----~~~~~~l~~ll~~~Gf~~~~~~  198 (523)
                            ..+.+....     +++++|.++.    .-..+++.+.+++ ||.+++..
T Consensus       233 I~~~vL~~l~~~~~~-----~l~~~G~lIlSGIl~~~~~~v~~a~~~-g~~~~~~~  282 (295)
T PF06325_consen  233 ILADVLLELAPDIAS-----LLKPGGYLILSGILEEQEDEVIEAYKQ-GFELVEER  282 (295)
T ss_dssp             S-HHHHHHHHHHCHH-----HEEEEEEEEEEEEEGGGHHHHHHHHHT-TEEEEEEE
T ss_pred             CCHHHHHHHHHHHHH-----hhCCCCEEEEccccHHHHHHHHHHHHC-CCEEEEEE
Confidence                  222122222     3555555543    2357788899976 99986554

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>PTZ00146 fibrillarin; Provisional

Probab=98.97  E-value=4.7e-09  Score=100.94  Aligned_cols=125  Identities=16%  Similarity=0.250  Sum_probs=81.4

Q ss_pred             hcCCCCCeEEEECCCccccHHHHHhhC-CCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeE
Q 009871           71 FSGAGRKDVLEVGCGAGNTIFPLIAAY-PDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDI  149 (523)
Q Consensus        71 ~~~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~  149 (523)
                      +...++.+|||+|||+|.++.+++... +...|+|||+|+.|++...+.+.. ..++.++..|+.... ....+.++||+
T Consensus       128 l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~-r~NI~~I~~Da~~p~-~y~~~~~~vDv  205 (293)
T PTZ00146        128 IPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKK-RPNIVPIIEDARYPQ-KYRMLVPMVDV  205 (293)
T ss_pred             eccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh-cCCCEEEECCccChh-hhhcccCCCCE
Confidence            344678899999999999999999984 456899999999755333332211 156889999986421 01123458999


Q ss_pred             EEEccccccce--eee--cceEEecCCeEEEe---------eCHHHH----HHHHHhCCCcEEEEE
Q 009871          150 VTMERLTGKDQ--KIS--ENFYVRGDGTRAFY---------FSNDFL----TSLFKENGFDVEELG  198 (523)
Q Consensus       150 V~~~~~~~~~~--~~~--~~~~~~~~g~~~~~---------~~~~~l----~~ll~~~Gf~~~~~~  198 (523)
                      |++.-. .+.+  .+.  ...+++++|.++..         ++++++    .+.|+++||++++..
T Consensus       206 V~~Dva-~pdq~~il~~na~r~LKpGG~~vI~ika~~id~g~~pe~~f~~ev~~L~~~GF~~~e~v  270 (293)
T PTZ00146        206 IFADVA-QPDQARIVALNAQYFLKNGGHFIISIKANCIDSTAKPEVVFASEVQKLKKEGLKPKEQL  270 (293)
T ss_pred             EEEeCC-CcchHHHHHHHHHHhccCCCEEEEEEeccccccCCCHHHHHHHHHHHHHHcCCceEEEE
Confidence            999111 1111  111  12368888887652         234444    478899999976654

>TIGR03438 probable methyltransferase

Probab=98.97  E-value=5.1e-09  Score=103.61  Aligned_cols=62  Identities=16%  Similarity=0.182  Sum_probs=51.9

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCC-CCEEEEEeCCHHHHHHHHhccccC--CCcEEEEEeeccC
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYP-DVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLIS  135 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~-~~~v~gvD~S~~~l~~a~~~~~~~--~~~v~~~~~d~~~  135 (523)
                      +++.+|||+|||+|..+..|++..+ +.+|+|+|+|++|++.|+++....  ..++.++++|+.+
T Consensus        62 ~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~  126 (301)
T TIGR03438        62 GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQ  126 (301)
T ss_pred             CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccc
Confidence            3567899999999999999998865 578999999999999998875432  2457788999975

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=98.97  E-value=1.2e-08  Score=95.80  Aligned_cols=113  Identities=14%  Similarity=0.035  Sum_probs=79.3

Q ss_pred             HHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCC
Q 009871          321 HLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNR  400 (523)
Q Consensus       321 ~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~  400 (523)
                      ..+..++.......++.+|||+|||+|..+..++... .+|+++|+++.+++.+++|+..++..    .+.+...|..+.
T Consensus        64 p~~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~-~~v~~vd~~~~~~~~a~~~~~~~~~~----~v~~~~~d~~~~  138 (212)
T PRK00312         64 PYMVARMTELLELKPGDRVLEIGTGSGYQAAVLAHLV-RRVFSVERIKTLQWEAKRRLKQLGLH----NVSVRHGDGWKG  138 (212)
T ss_pred             HHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHh-CEEEEEeCCHHHHHHHHHHHHHCCCC----ceEEEECCcccC
Confidence            3344444444455678899999999998877666664 48999999999999999999887653    355554443221


Q ss_pred             CcchhhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEe
Q 009871          401 DHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHI  460 (523)
Q Consensus       401 ~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~  460 (523)
                        .     ...++||+|++...      ...+.+.+.+.|         +|||.+++...
T Consensus       139 --~-----~~~~~fD~I~~~~~------~~~~~~~l~~~L---------~~gG~lv~~~~  176 (212)
T PRK00312        139 --W-----PAYAPFDRILVTAA------APEIPRALLEQL---------KEGGILVAPVG  176 (212)
T ss_pred             --C-----CcCCCcCEEEEccC------chhhhHHHHHhc---------CCCcEEEEEEc
Confidence              1     01358999998642      233456677888         67999888765

>PLN03075 nicotianamine synthase; Provisional

Probab=98.97  E-value=1.1e-08  Score=98.92  Aligned_cols=132  Identities=13%  Similarity=0.120  Sum_probs=92.7

Q ss_pred             CCCeEEEECCCccHHHHHHHh--c-CCCEEEEEcCChHHHHHHHHHHHh-cCCCCCCCceEEEeeecCCCCcchhhhhhc
Q 009871          335 AGKKVLELGCGCGGICSMVAA--G-SADLVVATDGDSIALDLLAQNVTA-NLKPPFLAKLITKRLEWGNRDHIEAIKEEN  410 (523)
Q Consensus       335 ~~~~VLElG~G~G~l~~~~a~--~-~~~~V~~~D~~~~~l~~~~~n~~~-n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~  410 (523)
                      +.++|+|||||.|.++.++++  . ...+++++|.++++++.|++++.. .++.   .++++...|..+...       .
T Consensus       123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~---~rV~F~~~Da~~~~~-------~  192 (296)
T PLN03075        123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLS---KRMFFHTADVMDVTE-------S  192 (296)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCcc---CCcEEEECchhhccc-------c
Confidence            678999999998867655443  2 345899999999999999999864 4443   567887766544210       1


Q ss_pred             CCCccEEEEccccCC-CCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCCh--hHHHHHHHHcCCEEEEEcCC
Q 009871          411 NEGFEVILGTDVSYI-PEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDE--PSMLSAATQCGFRLVDKWPS  486 (523)
Q Consensus       411 ~~~fD~Ii~~d~~y~-~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~--~~~~~~~~~~gf~~~~~~~~  486 (523)
                      .+.||+|++.-++|. .+....+++.+.+.|         +|||.+++-... ....  ....+...-.||++..+..+
T Consensus       193 l~~FDlVF~~ALi~~dk~~k~~vL~~l~~~L---------kPGG~Lvlr~~~-G~r~~LYp~v~~~~~~gf~~~~~~~P  261 (296)
T PLN03075        193 LKEYDVVFLAALVGMDKEEKVKVIEHLGKHM---------APGALLMLRSAH-GARAFLYPVVDPCDLRGFEVLSVFHP  261 (296)
T ss_pred             cCCcCEEEEecccccccccHHHHHHHHHHhc---------CCCcEEEEeccc-chHhhcCCCCChhhCCCeEEEEEECC
Confidence            358999999955565 489999999999999         779999987532 1111  01112223349999887664

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=98.97  E-value=5.5e-09  Score=96.63  Aligned_cols=129  Identities=9%  Similarity=0.016  Sum_probs=89.2

Q ss_pred             CCCeEEEECCCccHHHHHHHhcC-CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhh-hcCC
Q 009871          335 AGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKE-ENNE  412 (523)
Q Consensus       335 ~~~~VLElG~G~G~l~~~~a~~~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~-~~~~  412 (523)
                      ...+|||||||+|.++..++... ...|+++|+++.+++.+++|+..+++.    ++.+...|..+.     ... ++.+
T Consensus        16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~----ni~~i~~d~~~~-----~~~~~~~~   86 (194)
T TIGR00091        16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLK----NLHVLCGDANEL-----LDKFFPDG   86 (194)
T ss_pred             CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCC----CEEEEccCHHHH-----HHhhCCCC
Confidence            44689999999998888888775 348999999999999999999887653    466655444321     011 2345


Q ss_pred             CccEEEEccc-cCCCC-------ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhHHHHHHHHcC-CEEEE
Q 009871          413 GFEVILGTDV-SYIPE-------AILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCG-FRLVD  482 (523)
Q Consensus       413 ~fD~Ii~~d~-~y~~~-------~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~~~~~~~~g-f~~~~  482 (523)
                      .+|.|+.+-. .+...       ..+.+++.+.++|         +|||.+++....... ...+.+.+.+.+ |+...
T Consensus        87 ~~d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~L---------kpgG~l~~~td~~~~-~~~~~~~~~~~~~f~~~~  155 (194)
T TIGR00091        87 SLSKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVL---------KKGGVIHFKTDNEPL-FEDMLKVLSENDLFENTS  155 (194)
T ss_pred             ceeEEEEECCCcCCCCCccccccCCHHHHHHHHHHh---------CCCCEEEEEeCCHHH-HHHHHHHHHhCCCeEecc
Confidence            8999998622 12111       1267999999999         789999987754321 234566666666 76654

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=98.97  E-value=2.2e-09  Score=103.23  Aligned_cols=115  Identities=19%  Similarity=0.265  Sum_probs=78.3

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCc--EEEEEeeccCCccCCCCCCCceeEEE
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETR--VSTFVCDLISDDLSRQISPSSIDIVT  151 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~--v~~~~~d~~~~~~~~~~~~~~fD~V~  151 (523)
                      .++.+|||+|||+|.++...++.+ ...|+|+|++|.+++.|+.|...+...  +.....+...     ....+.||+|+
T Consensus       161 ~~g~~vlDvGcGSGILaIAa~kLG-A~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~-----~~~~~~~DvIV  234 (300)
T COG2264         161 KKGKTVLDVGCGSGILAIAAAKLG-AKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLE-----VPENGPFDVIV  234 (300)
T ss_pred             cCCCEEEEecCChhHHHHHHHHcC-CceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchh-----hcccCcccEEE
Confidence            478999999999999999998885 346999999999999999988665433  2122222211     12235899999


Q ss_pred             E-------ccccccceeeecceEEecCCeEEEe----eCHHHHHHHHHhCCCcEEEEEe
Q 009871          152 M-------ERLTGKDQKISENFYVRGDGTRAFY----FSNDFLTSLFKENGFDVEELGL  199 (523)
Q Consensus       152 ~-------~~~~~~~~~~~~~~~~~~~g~~~~~----~~~~~l~~ll~~~Gf~~~~~~~  199 (523)
                      +       ..+.+....     .++++|+++.-    -..+.+.+.+.++||.++++..
T Consensus       235 ANILA~vl~~La~~~~~-----~lkpgg~lIlSGIl~~q~~~V~~a~~~~gf~v~~~~~  288 (300)
T COG2264         235 ANILAEVLVELAPDIKR-----LLKPGGRLILSGILEDQAESVAEAYEQAGFEVVEVLE  288 (300)
T ss_pred             ehhhHHHHHHHHHHHHH-----HcCCCceEEEEeehHhHHHHHHHHHHhCCCeEeEEEe
Confidence            9       222222222     45666665541    1356688888899999876643

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=98.96  E-value=6.6e-09  Score=103.39  Aligned_cols=75  Identities=20%  Similarity=0.364  Sum_probs=61.2

Q ss_pred             hcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC--CCcEEEEEeeccCCccCCCCCCCcee
Q 009871           71 FSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISDDLSRQISPSSID  148 (523)
Q Consensus        71 ~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~~~~~~~~~~fD  148 (523)
                      +...+..+|||||||+|.++..+++++|+.+++++|. +.+++.++++....  ..+++++.+|+.+.    +++  .+|
T Consensus       145 ~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~----~~~--~~D  217 (306)
T TIGR02716       145 AKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKE----SYP--EAD  217 (306)
T ss_pred             cCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCC----CCC--CCC
Confidence            3445678999999999999999999999999999997 79999998876432  35799999999765    333  369


Q ss_pred             EEEE
Q 009871          149 IVTM  152 (523)
Q Consensus       149 ~V~~  152 (523)
                      +|++
T Consensus       218 ~v~~  221 (306)
T TIGR02716       218 AVLF  221 (306)
T ss_pred             EEEe
Confidence            9877

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=98.96  E-value=1.7e-09  Score=108.32  Aligned_cols=81  Identities=12%  Similarity=0.240  Sum_probs=67.5

Q ss_pred             hhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC-CCcEEEEEeeccCCccCCCCCCCcee
Q 009871           70 YFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT-ETRVSTFVCDLISDDLSRQISPSSID  148 (523)
Q Consensus        70 ~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~-~~~v~~~~~d~~~~~~~~~~~~~~fD  148 (523)
                      .+....+..+||||||+|.++..+++++|+..++|+|+++.|++.|.++.... ..++.++++|+..+  ...++++++|
T Consensus       117 ~~~~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~l--l~~~~~~s~D  194 (390)
T PRK14121        117 FISKNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLL--LELLPSNSVE  194 (390)
T ss_pred             HhcCCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHh--hhhCCCCcee
Confidence            33335677999999999999999999999999999999999999998876433 36899999998743  1246789999


Q ss_pred             EEEE
Q 009871          149 IVTM  152 (523)
Q Consensus       149 ~V~~  152 (523)
                      .|++
T Consensus       195 ~I~l  198 (390)
T PRK14121        195 KIFV  198 (390)
T ss_pred             EEEE
Confidence            9998

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=98.96  E-value=7.6e-10  Score=101.04  Aligned_cols=122  Identities=20%  Similarity=0.274  Sum_probs=79.3

Q ss_pred             CChHHHHHHHHHhhHHHHHHHHhcccccccchhhhHHHHhhhhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCC
Q 009871           29 VSPFWRDKYEREAKKYWDLFYKRHQDRFFKDRHYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFS  108 (523)
Q Consensus        29 ~~~~~~~~~~~~~~~~Wd~~y~~~~~~f~~~~~~l~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S  108 (523)
                      ...+..+.|+..+.+|.-.+|+.-..                .. .....++|||||+|..+..+++++.+  |+|+|+|
T Consensus         4 ~~~~~a~~Y~~ARP~YPtdw~~~ia~----------------~~-~~h~~a~DvG~G~Gqa~~~iae~~k~--VIatD~s   64 (261)
T KOG3010|consen    4 LFDKQAADYLNARPSYPTDWFKKIAS----------------RT-EGHRLAWDVGTGNGQAARGIAEHYKE--VIATDVS   64 (261)
T ss_pred             cccccHHHHhhcCCCCcHHHHHHHHh----------------hC-CCcceEEEeccCCCcchHHHHHhhhh--heeecCC
Confidence            34456777877777777655554110                11 23348999999999888888888877  9999999


Q ss_pred             HHHHHHHHhccccC--CCcEEEEEeeccCCccCCCCCCCceeEEEE---------ccccccceeeecceEEecCC-eEEE
Q 009871          109 PRAVNLVMTHKDFT--ETRVSTFVCDLISDDLSRQISPSSIDIVTM---------ERLTGKDQKISENFYVRGDG-TRAF  176 (523)
Q Consensus       109 ~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~---------~~~~~~~~~~~~~~~~~~~g-~~~~  176 (523)
                      +.||+.|+++....  .........++..+    .-.++|+|+|+|         .+|.+...+     .+|++| ...+
T Consensus        65 ~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L----~g~e~SVDlI~~Aqa~HWFdle~fy~~~~r-----vLRk~Gg~iav  135 (261)
T KOG3010|consen   65 EAMLKVAKKHPPVTYCHTPSTMSSDEMVDL----LGGEESVDLITAAQAVHWFDLERFYKEAYR-----VLRKDGGLIAV  135 (261)
T ss_pred             HHHHHHhhcCCCcccccCCccccccccccc----cCCCcceeeehhhhhHHhhchHHHHHHHHH-----HcCCCCCEEEE
Confidence            99999999975321  12222223333322    223899999999         455555555     566665 5555


Q ss_pred             ee
Q 009871          177 YF  178 (523)
Q Consensus       177 ~~  178 (523)
                      |.
T Consensus       136 W~  137 (261)
T KOG3010|consen  136 WN  137 (261)
T ss_pred             EE
Confidence            43

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=98.95  E-value=3e-09  Score=96.79  Aligned_cols=120  Identities=18%  Similarity=0.236  Sum_probs=82.4

Q ss_pred             HHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCc
Q 009871          323 MAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDH  402 (523)
Q Consensus       323 la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~  402 (523)
                      +-++|...  ...|.+||||-||||.++..++++|+++|+++|.++.+++.+++|++.-+..   ..+.+...|.     
T Consensus        32 lFniL~~~--~~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~---~~~~v~~~d~-----  101 (183)
T PF03602_consen   32 LFNILQPR--NLEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLE---DKIRVIKGDA-----  101 (183)
T ss_dssp             HHHHHHCH---HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-G---GGEEEEESSH-----
T ss_pred             HHHHhccc--ccCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCC---cceeeeccCH-----
Confidence            34444433  1589999999999999999999999999999999999999999999986664   2344443322     


Q ss_pred             chhhhhh--cCCCccEEEEccccCCCCC-hHHHHHHHH--HHhhccCCCCCCCCCcEEEEEEeec
Q 009871          403 IEAIKEE--NNEGFEVILGTDVSYIPEA-ILPLFATAK--ELTASSNKSLREDQQPAFILCHIFR  462 (523)
Q Consensus       403 ~~~~~~~--~~~~fD~Ii~~d~~y~~~~-~~~l~~~l~--~ll~~~~~~~~~~~~g~~~l~~~~r  462 (523)
                      ...+..+  ...+||+|+. |..|.... +..++..+.  .+|         +++|.+++-+..+
T Consensus       102 ~~~l~~~~~~~~~fDiIfl-DPPY~~~~~~~~~l~~l~~~~~l---------~~~~~ii~E~~~~  156 (183)
T PF03602_consen  102 FKFLLKLAKKGEKFDIIFL-DPPYAKGLYYEELLELLAENNLL---------NEDGLIIIEHSKK  156 (183)
T ss_dssp             HHHHHHHHHCTS-EEEEEE---STTSCHHHHHHHHHHHHTTSE---------EEEEEEEEEEETT
T ss_pred             HHHHHhhcccCCCceEEEE-CCCcccchHHHHHHHHHHHCCCC---------CCCEEEEEEecCC
Confidence            2222222  4679999988 88888887 488888887  567         4577777766554

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=98.95  E-value=2.2e-08  Score=92.19  Aligned_cols=135  Identities=14%  Similarity=0.088  Sum_probs=95.0

Q ss_pred             CCCCCCCeEEEECCCccHHHHHHHhc-CC------CEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcc
Q 009871          331 PTIVAGKKVLELGCGCGGICSMVAAG-SA------DLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHI  403 (523)
Q Consensus       331 ~~~~~~~~VLElG~G~G~l~~~~a~~-~~------~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~  403 (523)
                      .....+.+|||++||||-++..+... ..      .+|+..|++|+||+.++++...-.+... .++.+..   ++.+.+
T Consensus        96 L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~-~~~~w~~---~dAE~L  171 (296)
T KOG1540|consen   96 LGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKAS-SRVEWVE---GDAEDL  171 (296)
T ss_pred             cCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcC-CceEEEe---CCcccC
Confidence            34457799999999999888777664 22      6899999999999999998877444321 2232222   222222


Q ss_pred             hhhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhHHHHHHHHcCCEEEEE
Q 009871          404 EAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLVDK  483 (523)
Q Consensus       404 ~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~~~~~~~~gf~~~~~  483 (523)
                          ++++.+||....+--|-+..+++..++++.++|         +|||+|++.... ....+.+......+-|.+..+
T Consensus       172 ----pFdd~s~D~yTiafGIRN~th~~k~l~EAYRVL---------KpGGrf~cLeFs-kv~~~~l~~fy~~ysf~Vlpv  237 (296)
T KOG1540|consen  172 ----PFDDDSFDAYTIAFGIRNVTHIQKALREAYRVL---------KPGGRFSCLEFS-KVENEPLKWFYDQYSFDVLPV  237 (296)
T ss_pred             ----CCCCCcceeEEEecceecCCCHHHHHHHHHHhc---------CCCcEEEEEEcc-ccccHHHHHHHHhhhhhhhch
Confidence                577889999998877777888999999999999         789998855444 222234444445555666443

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=98.94  E-value=2.4e-09  Score=103.72  Aligned_cols=111  Identities=16%  Similarity=0.149  Sum_probs=77.0

Q ss_pred             CCCeEEEECCCccH----HHHHHHhcC------CCEEEEEcCChHHHHHHHHHHHh----cCCCC---------------
Q 009871          335 AGKKVLELGCGCGG----ICSMVAAGS------ADLVVATDGDSIALDLLAQNVTA----NLKPP---------------  385 (523)
Q Consensus       335 ~~~~VLElG~G~G~----l~~~~a~~~------~~~V~~~D~~~~~l~~~~~n~~~----n~~~~---------------  385 (523)
                      ++.+|+|+|||||.    ++..++..+      ..+|+|||+|+.||+.|++++..    .+++.               
T Consensus        99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~  178 (264)
T smart00138       99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR  178 (264)
T ss_pred             CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence            45799999999995    444555432      24899999999999999976421    11110               


Q ss_pred             ----CCCceEEEeeecCCCCcchhhhhhcCCCccEEEEccccCCC--CChHHHHHHHHHHhhccCCCCCCCCCcEEEEEE
Q 009871          386 ----FLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIP--EAILPLFATAKELTASSNKSLREDQQPAFILCH  459 (523)
Q Consensus       386 ----~~~~v~~~~ldw~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~--~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~  459 (523)
                          ....|.+...|..+.       +.+.++||+|++..++.+.  +....+++.+.++|         +|||.+++.+
T Consensus       179 v~~~ir~~V~F~~~dl~~~-------~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L---------~pGG~L~lg~  242 (264)
T smart00138      179 VKPELKERVRFAKHNLLAE-------SPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEAL---------KPGGYLFLGH  242 (264)
T ss_pred             EChHHhCcCEEeeccCCCC-------CCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHh---------CCCeEEEEEC
Confidence                012455555554432       1235689999999887664  35668999999999         7899999976


Q ss_pred             ee
Q 009871          460 IF  461 (523)
Q Consensus       460 ~~  461 (523)
                      ..
T Consensus       243 ~E  244 (264)
T smart00138      243 SE  244 (264)
T ss_pred             cc
Confidence            54

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=98.94  E-value=1.8e-09  Score=108.09  Aligned_cols=76  Identities=22%  Similarity=0.313  Sum_probs=61.7

Q ss_pred             hcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEE
Q 009871           71 FSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIV  150 (523)
Q Consensus        71 ~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V  150 (523)
                      ++....++|||+|||+|.++..+++++|+.+|+++|+|+.|++.|+++...+....+++..|+...      .+++||+|
T Consensus       192 l~~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~------~~~~fDlI  265 (342)
T PRK09489        192 LTPHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSD------IKGRFDMI  265 (342)
T ss_pred             ccccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccc------cCCCccEE
Confidence            333445689999999999999999999888999999999999999987755544556777777532      25789999


Q ss_pred             EE
Q 009871          151 TM  152 (523)
Q Consensus       151 ~~  152 (523)
                      +|
T Consensus       266 vs  267 (342)
T PRK09489        266 IS  267 (342)
T ss_pred             EE
Confidence            99

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=98.92  E-value=2.5e-09  Score=103.51  Aligned_cols=75  Identities=20%  Similarity=0.297  Sum_probs=57.8

Q ss_pred             CCCCeEEEECCCccc----cHHHHHhhCC-----CCEEEEEeCCHHHHHHHHhcccc-----------------------
Q 009871           74 AGRKDVLEVGCGAGN----TIFPLIAAYP-----DVFVYACDFSPRAVNLVMTHKDF-----------------------  121 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~----~~~~l~~~~~-----~~~v~gvD~S~~~l~~a~~~~~~-----------------------  121 (523)
                      ..+.+|+|+|||+|.    ++..+++.++     +.+|+|+|+|+.||+.|++..-.                       
T Consensus        98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~  177 (264)
T smart00138       98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKY  177 (264)
T ss_pred             CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeE
Confidence            345799999999997    4555666543     57899999999999999985310                       


Q ss_pred             -----CCCcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871          122 -----TETRVSTFVCDLISDDLSRQISPSSIDIVTM  152 (523)
Q Consensus       122 -----~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~  152 (523)
                           ...+++|.++|+.+.    +++.++||+|+|
T Consensus       178 ~v~~~ir~~V~F~~~dl~~~----~~~~~~fD~I~c  209 (264)
T smart00138      178 RVKPELKERVRFAKHNLLAE----SPPLGDFDLIFC  209 (264)
T ss_pred             EEChHHhCcCEEeeccCCCC----CCccCCCCEEEe
Confidence                 013689999999876    456789999999

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=98.92  E-value=5e-09  Score=93.17  Aligned_cols=107  Identities=14%  Similarity=0.208  Sum_probs=80.8

Q ss_pred             eEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCccEE
Q 009871          338 KVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVI  417 (523)
Q Consensus       338 ~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~fD~I  417 (523)
                      .|||+|||||..--..--....+||++|.++.|-+.+.+.+..|...      ++..+-....+.   +.++++.++|+|
T Consensus        79 ~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~------~~~~fvva~ge~---l~~l~d~s~DtV  149 (252)
T KOG4300|consen   79 DVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPL------QVERFVVADGEN---LPQLADGSYDTV  149 (252)
T ss_pred             ceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCc------ceEEEEeechhc---CcccccCCeeeE
Confidence            68999999994332332234568999999999999999999988543      222222333332   334578899999


Q ss_pred             EEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec
Q 009871          418 LGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFR  462 (523)
Q Consensus       418 i~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r  462 (523)
                      ++.=|+-..++....++.+.++|         +|||++++....+
T Consensus       150 V~TlvLCSve~~~k~L~e~~rlL---------RpgG~iifiEHva  185 (252)
T KOG4300|consen  150 VCTLVLCSVEDPVKQLNEVRRLL---------RPGGRIIFIEHVA  185 (252)
T ss_pred             EEEEEEeccCCHHHHHHHHHHhc---------CCCcEEEEEeccc
Confidence            99999999999999999999999         7799998865543

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=98.92  E-value=4.6e-09  Score=94.93  Aligned_cols=75  Identities=17%  Similarity=0.111  Sum_probs=62.6

Q ss_pred             hcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEE
Q 009871           71 FSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIV  150 (523)
Q Consensus        71 ~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V  150 (523)
                      +...++.+|||+|||+|.++..++++  +.+|+|+|+++.|++.++++... ..+++++++|+.+.    ++++.+||.|
T Consensus         9 ~~~~~~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~~-~~~v~ii~~D~~~~----~~~~~~~d~v   81 (169)
T smart00650        9 ANLRPGDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFAA-ADNLTVIHGDALKF----DLPKLQPYKV   81 (169)
T ss_pred             cCCCCcCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhcc-CCCEEEEECchhcC----CccccCCCEE
Confidence            33456789999999999999999988  56799999999999999987643 35799999999877    4555679999


Q ss_pred             EE
Q 009871          151 TM  152 (523)
Q Consensus       151 ~~  152 (523)
                      ++
T Consensus        82 i~   83 (169)
T smart00650       82 VG   83 (169)
T ss_pred             EE
Confidence            87

>TIGR00478 tly hemolysin TlyA family protein

Probab=98.91  E-value=1.4e-08  Score=95.20  Aligned_cols=143  Identities=14%  Similarity=0.110  Sum_probs=92.8

Q ss_pred             ccchhHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHH-HHHHHHhcCCCCCCCceEEE
Q 009871          315 MLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDL-LAQNVTANLKPPFLAKLITK  393 (523)
Q Consensus       315 ~~W~~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~-~~~n~~~n~~~~~~~~v~~~  393 (523)
                      .++.++..|...+.......++++|||+|||||+++..++..|+.+|+++|+++.++.. ++.|..--..    ....+.
T Consensus        55 ~vsr~~~kL~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~~~v~~~----~~~ni~  130 (228)
T TIGR00478        55 FVSRGGEKLKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQDERVKVL----ERTNIR  130 (228)
T ss_pred             hhhhhHHHHHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcCCCeeEe----ecCCcc
Confidence            45677888888888776567899999999999999999999988899999999977764 4433221000    111222


Q ss_pred             eeecCCCCcchhhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec-----------
Q 009871          394 RLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFR-----------  462 (523)
Q Consensus       394 ~ldw~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r-----------  462 (523)
                      .++|.+.. .    +  -..+|+++.+        +..++..+..+|         ++ |.+++...+.           
T Consensus       131 ~~~~~~~~-~----d--~~~~DvsfiS--------~~~~l~~i~~~l---------~~-~~~~~L~KPqFE~~~~~~~~~  185 (228)
T TIGR00478       131 YVTPADIF-P----D--FATFDVSFIS--------LISILPELDLLL---------NP-NDLTLLFKPQFEAGREKKNKK  185 (228)
T ss_pred             cCCHhHcC-C----C--ceeeeEEEee--------hHhHHHHHHHHh---------Cc-CeEEEEcChHhhhcHhhcCcC
Confidence            44554431 0    1  1367877776        444677888888         44 4444332220           


Q ss_pred             ---------CCChhHHHHHHHHcCCEEEEEcCC
Q 009871          463 ---------QVDEPSMLSAATQCGFRLVDKWPS  486 (523)
Q Consensus       463 ---------~~~~~~~~~~~~~~gf~~~~~~~~  486 (523)
                               ..-...+...+.+.||++..+.++
T Consensus       186 giv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  218 (228)
T TIGR00478       186 GVVRDKEAIALALHKVIDKGESPDFQEKKIIFS  218 (228)
T ss_pred             CeecCHHHHHHHHHHHHHHHHcCCCeEeeEEEC
Confidence                     111245566677889999887664

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>PRK04457 spermidine synthase; Provisional

Probab=98.91  E-value=5.3e-08  Score=94.16  Aligned_cols=122  Identities=12%  Similarity=0.147  Sum_probs=84.2

Q ss_pred             CCCeEEEECCCccHHHHHHHhcC-CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCC
Q 009871          335 AGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG  413 (523)
Q Consensus       335 ~~~~VLElG~G~G~l~~~~a~~~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~  413 (523)
                      +.++|||||||+|.++..+++.. ..+|+++|+++++++.+++++..+..   ..++.+...|..+     -+.. .+.+
T Consensus        66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~---~~rv~v~~~Da~~-----~l~~-~~~~  136 (262)
T PRK04457         66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPEN---GERFEVIEADGAE-----YIAV-HRHS  136 (262)
T ss_pred             CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCC---CCceEEEECCHHH-----HHHh-CCCC
Confidence            45799999999998888777764 45899999999999999998765432   2456665443221     1111 2458


Q ss_pred             ccEEEEccccCCCC------ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhHHHHHHHHc
Q 009871          414 FEVILGTDVSYIPE------AILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQC  476 (523)
Q Consensus       414 fD~Ii~~d~~y~~~------~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~~~~~~~~  476 (523)
                      ||+|+.. . |+..      ....+++.+.+.|         +|+|++++....+......+++.+++.
T Consensus       137 yD~I~~D-~-~~~~~~~~~l~t~efl~~~~~~L---------~pgGvlvin~~~~~~~~~~~l~~l~~~  194 (262)
T PRK04457        137 TDVILVD-G-FDGEGIIDALCTQPFFDDCRNAL---------SSDGIFVVNLWSRDKRYDRYLERLESS  194 (262)
T ss_pred             CCEEEEe-C-CCCCCCccccCcHHHHHHHHHhc---------CCCcEEEEEcCCCchhHHHHHHHHHHh
Confidence            9999973 2 3222      2378999999999         779999886554443345566666554

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=98.91  E-value=7.5e-09  Score=105.43  Aligned_cols=72  Identities=19%  Similarity=0.176  Sum_probs=59.3

Q ss_pred             hcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEE
Q 009871           71 FSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIV  150 (523)
Q Consensus        71 ~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V  150 (523)
                      +...++.+|||||||+|.++..+++.+ +++|+|+|+|++|++.|+++..  ...+++...|...+       +++||+|
T Consensus       163 l~l~~g~rVLDIGcG~G~~a~~la~~~-g~~V~giDlS~~~l~~A~~~~~--~l~v~~~~~D~~~l-------~~~fD~I  232 (383)
T PRK11705        163 LQLKPGMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERCA--GLPVEIRLQDYRDL-------NGQFDRI  232 (383)
T ss_pred             hCCCCCCEEEEeCCCccHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhc--cCeEEEEECchhhc-------CCCCCEE
Confidence            344678899999999999999998775 6789999999999999998763  23578888887643       4689999


Q ss_pred             EE
Q 009871          151 TM  152 (523)
Q Consensus       151 ~~  152 (523)
                      ++
T Consensus       233 vs  234 (383)
T PRK11705        233 VS  234 (383)
T ss_pred             EE
Confidence            98

>PRK06922 hypothetical protein; Provisional

Probab=98.90  E-value=9.2e-09  Score=108.35  Aligned_cols=109  Identities=15%  Similarity=0.156  Sum_probs=78.4

Q ss_pred             CCCCCeEEEECCCccHHHHHHHhcC-CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcC
Q 009871          333 IVAGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENN  411 (523)
Q Consensus       333 ~~~~~~VLElG~G~G~l~~~~a~~~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~  411 (523)
                      ..++.+|||+|||+|.++..+++.. ..+|+++|+|+.|++.++++...++.     ++.+...|-.+.   .  ..+++
T Consensus       416 ~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~-----~ie~I~gDa~dL---p--~~fed  485 (677)
T PRK06922        416 YIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGR-----SWNVIKGDAINL---S--SSFEK  485 (677)
T ss_pred             hcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCC-----CeEEEEcchHhC---c--cccCC
Confidence            3467899999999997777777653 46999999999999999988765432     233333332211   0  01346


Q ss_pred             CCccEEEEccccCC-------------CCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEe
Q 009871          412 EGFEVILGTDVSYI-------------PEAILPLFATAKELTASSNKSLREDQQPAFILCHI  460 (523)
Q Consensus       412 ~~fD~Ii~~d~~y~-------------~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~  460 (523)
                      ++||+|+++.++++             .+....+++.+.++|         +|||.+++...
T Consensus       486 eSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVL---------KPGGrLII~D~  538 (677)
T PRK06922        486 ESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVL---------KPGGRIIIRDG  538 (677)
T ss_pred             CCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHc---------CCCcEEEEEeC
Confidence            78999999876653             235678899999999         78999999754

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=98.90  E-value=5.3e-09  Score=102.79  Aligned_cols=111  Identities=20%  Similarity=0.290  Sum_probs=77.1

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCC--CcEEEEEeeccCCccCCCCCCCceeEEE
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQISPSSIDIVT  151 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~V~  151 (523)
                      .++.+|||+|||+|.++..+++.+ ..+|+|+|+|+.|++.|+++...+.  .++.+...+..      ...+++||+|+
T Consensus       158 ~~g~~VLDvGcGsG~lai~aa~~g-~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~------~~~~~~fDlVv  230 (288)
T TIGR00406       158 LKDKNVIDVGCGSGILSIAALKLG-AAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLE------QPIEGKADVIV  230 (288)
T ss_pred             CCCCEEEEeCCChhHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccc------cccCCCceEEE
Confidence            457899999999999998887764 3579999999999999999875432  34555555532      23467899999


Q ss_pred             Ec-------cccccceeeecceEEecCCeEEEe----eCHHHHHHHHHhCCCcEEEE
Q 009871          152 ME-------RLTGKDQKISENFYVRGDGTRAFY----FSNDFLTSLFKENGFDVEEL  197 (523)
Q Consensus       152 ~~-------~~~~~~~~~~~~~~~~~~g~~~~~----~~~~~l~~ll~~~Gf~~~~~  197 (523)
                      +.       .+.....+     .++++|.++.-    ...+++.+.+++. |.+++.
T Consensus       231 an~~~~~l~~ll~~~~~-----~LkpgG~li~sgi~~~~~~~v~~~~~~~-f~~~~~  281 (288)
T TIGR00406       231 ANILAEVIKELYPQFSR-----LVKPGGWLILSGILETQAQSVCDAYEQG-FTVVEI  281 (288)
T ss_pred             EecCHHHHHHHHHHHHH-----HcCCCcEEEEEeCcHhHHHHHHHHHHcc-CceeeE
Confidence            91       22222222     67788877652    2456677778765 876544

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=98.90  E-value=4.3e-09  Score=98.24  Aligned_cols=114  Identities=15%  Similarity=0.195  Sum_probs=72.7

Q ss_pred             CCCCeEEEECCCccccHHHHHhhC-CCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCcc----CCCCCCCcee
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAY-PDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDL----SRQISPSSID  148 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~-~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~----~~~~~~~~fD  148 (523)
                      .++.+|||||||+|..+..++++. +..+|+|||+++ |.         ...++.++++|+.+...    ..++.+++||
T Consensus        50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~~---------~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D  119 (209)
T PRK11188         50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-MD---------PIVGVDFLQGDFRDELVLKALLERVGDSKVQ  119 (209)
T ss_pred             CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-cc---------CCCCcEEEecCCCChHHHHHHHHHhCCCCCC
Confidence            567899999999999999999884 457899999998 21         11458999999986420    0124578899


Q ss_pred             EEEE---ccccccc------------eeeec-ceEEecCCeEEE-eeCHHHHHHHHHhC--CCcEEEE
Q 009871          149 IVTM---ERLTGKD------------QKISE-NFYVRGDGTRAF-YFSNDFLTSLFKEN--GFDVEEL  197 (523)
Q Consensus       149 ~V~~---~~~~~~~------------~~~~~-~~~~~~~g~~~~-~~~~~~l~~ll~~~--Gf~~~~~  197 (523)
                      +|+|   ..+....            ..+.. ..+++++|.+++ .+..+.+.+++...  .|..+++
T Consensus       120 ~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~~~~~l~~l~~~f~~v~~  187 (209)
T PRK11188        120 VVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSLFTKVKV  187 (209)
T ss_pred             EEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCcCHHHHHHHHHhCceEEEE
Confidence            9998   1110000            00000 226788888776 44444444444432  4665444

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=98.89  E-value=3.8e-08  Score=100.30  Aligned_cols=124  Identities=12%  Similarity=0.053  Sum_probs=85.2

Q ss_pred             CCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCc
Q 009871          335 AGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGF  414 (523)
Q Consensus       335 ~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~f  414 (523)
                      ++.+|||||||+|.++..++..+ .+|+++|+++.+++.+++|++.|+..    ++.+...|..+.     +.. ...+|
T Consensus       233 ~~~~vLDL~cG~G~~~l~la~~~-~~v~~vE~~~~av~~a~~N~~~~~~~----~~~~~~~d~~~~-----~~~-~~~~~  301 (374)
T TIGR02085       233 PVTQMWDLFCGVGGFGLHCAGPD-TQLTGIEIESEAIACAQQSAQMLGLD----NLSFAALDSAKF-----ATA-QMSAP  301 (374)
T ss_pred             CCCEEEEccCCccHHHHHHhhcC-CeEEEEECCHHHHHHHHHHHHHcCCC----cEEEEECCHHHH-----HHh-cCCCC
Confidence            56799999999998888888765 68999999999999999999998763    456655444221     001 12469


Q ss_pred             cEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhHHHHHHHHcCCEEEEEcC
Q 009871          415 EVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLVDKWP  485 (523)
Q Consensus       415 D~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~~~~~~~~gf~~~~~~~  485 (523)
                      |+|+.. .-+. .....+++.+.. +         +|++.+|++........ ++...   .||++.++-.
T Consensus       302 D~vi~D-PPr~-G~~~~~l~~l~~-~---------~p~~ivyvsc~p~TlaR-Dl~~L---~gy~l~~~~~  356 (374)
T TIGR02085       302 ELVLVN-PPRR-GIGKELCDYLSQ-M---------APKFILYSSCNAQTMAK-DIAEL---SGYQIERVQL  356 (374)
T ss_pred             CEEEEC-CCCC-CCcHHHHHHHHh-c---------CCCeEEEEEeCHHHHHH-HHHHh---cCceEEEEEE
Confidence            999885 4453 445666666653 3         46888888765432221 22222   6899988754

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>PRK07402 precorrin-6B methylase; Provisional

Probab=98.89  E-value=1e-08  Score=95.05  Aligned_cols=121  Identities=16%  Similarity=0.099  Sum_probs=78.7

Q ss_pred             hhhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC-CCcEEEEEeeccCCccCCCCCCCce
Q 009871           69 RYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT-ETRVSTFVCDLISDDLSRQISPSSI  147 (523)
Q Consensus        69 ~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~-~~~v~~~~~d~~~~~~~~~~~~~~f  147 (523)
                      ..+...++.+|||+|||+|.++..+++..++.+|+|+|+|+.|++.|+++.... ..+++++.+|+.+. +.  .....+
T Consensus        34 ~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~-~~--~~~~~~  110 (196)
T PRK07402         34 SQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPEC-LA--QLAPAP  110 (196)
T ss_pred             HhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHH-Hh--hCCCCC
Confidence            344446778999999999999999988777889999999999999999876432 25689999998641 11  112235


Q ss_pred             eEEEEc------cccccceeeecceEEecCCeEEEee-CHHH---HHHHHHhC---CCcEEEE
Q 009871          148 DIVTME------RLTGKDQKISENFYVRGDGTRAFYF-SNDF---LTSLFKEN---GFDVEEL  197 (523)
Q Consensus       148 D~V~~~------~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~---l~~ll~~~---Gf~~~~~  197 (523)
                      |.++..      .++....+     .++++|.++... +.+.   +.+.+++.   |++++.+
T Consensus       111 d~v~~~~~~~~~~~l~~~~~-----~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (196)
T PRK07402        111 DRVCIEGGRPIKEILQAVWQ-----YLKPGGRLVATASSLEGLYAISEGLAQLQARNIEVVQA  168 (196)
T ss_pred             CEEEEECCcCHHHHHHHHHH-----hcCCCeEEEEEeecHHHHHHHHHHHHhcCCCCceEEEE
Confidence            666551      11112222     577888876543 3333   44555443   4444443

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=98.89  E-value=1.1e-08  Score=97.31  Aligned_cols=109  Identities=12%  Similarity=0.048  Sum_probs=78.8

Q ss_pred             CCCCeEEEECCCccHHHHHHHhc--CCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhh-c
Q 009871          334 VAGKKVLELGCGCGGICSMVAAG--SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEE-N  410 (523)
Q Consensus       334 ~~~~~VLElG~G~G~l~~~~a~~--~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~-~  410 (523)
                      .+.++|||+|||+|..+..+++.  ...+|+++|+++++++.|++|++.+++.   .++.+...+..+.  +..+... +
T Consensus        67 ~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~---~~i~~~~gda~~~--L~~l~~~~~  141 (234)
T PLN02781         67 MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVD---HKINFIQSDALSA--LDQLLNNDP  141 (234)
T ss_pred             hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC---CcEEEEEccHHHH--HHHHHhCCC
Confidence            36789999999999655555543  3469999999999999999999999886   5677666555432  2111111 1


Q ss_pred             CCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEE
Q 009871          411 NEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCH  459 (523)
Q Consensus       411 ~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~  459 (523)
                      .++||+|+..   -....+..++..+.++|         +|||.+++-.
T Consensus       142 ~~~fD~VfiD---a~k~~y~~~~~~~~~ll---------~~GG~ii~dn  178 (234)
T PLN02781        142 KPEFDFAFVD---ADKPNYVHFHEQLLKLV---------KVGGIIAFDN  178 (234)
T ss_pred             CCCCCEEEEC---CCHHHHHHHHHHHHHhc---------CCCeEEEEEc
Confidence            3589999974   23456778888888999         6799887644

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=98.89  E-value=8.7e-09  Score=92.40  Aligned_cols=103  Identities=13%  Similarity=0.153  Sum_probs=78.3

Q ss_pred             CCCCCeEEEECCCccHHHHHHHhcC-CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcC
Q 009871          333 IVAGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENN  411 (523)
Q Consensus       333 ~~~~~~VLElG~G~G~l~~~~a~~~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~  411 (523)
                      .-.-.+|.|||||+|..+.+++.+. .+.|+++|-|++||+.|+...         ..+++...|..+-        .+.
T Consensus        28 ~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl---------p~~~f~~aDl~~w--------~p~   90 (257)
T COG4106          28 LERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL---------PDATFEEADLRTW--------KPE   90 (257)
T ss_pred             ccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC---------CCCceecccHhhc--------CCC
Confidence            3456799999999998788888884 568999999999999986542         2233333322221        124


Q ss_pred             CCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee
Q 009871          412 EGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIF  461 (523)
Q Consensus       412 ~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~  461 (523)
                      ..+|+|+++-++.+-.++..|+..+-..|         .|||++-+-.+.
T Consensus        91 ~~~dllfaNAvlqWlpdH~~ll~rL~~~L---------~Pgg~LAVQmPd  131 (257)
T COG4106          91 QPTDLLFANAVLQWLPDHPELLPRLVSQL---------APGGVLAVQMPD  131 (257)
T ss_pred             CccchhhhhhhhhhccccHHHHHHHHHhh---------CCCceEEEECCC
Confidence            58999999999999999999999999999         679987765443

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=98.88  E-value=3e-09  Score=96.04  Aligned_cols=116  Identities=15%  Similarity=0.258  Sum_probs=77.2

Q ss_pred             CCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEEE--
Q 009871           75 GRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM--  152 (523)
Q Consensus        75 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~--  152 (523)
                      +-.++||+|||||-.+..|....  .+++|||+|+.|++.|.++..+.    ...++|+..  |.....++.||+|++  
T Consensus       125 ~F~~~lDLGCGTGL~G~~lR~~a--~~ltGvDiS~nMl~kA~eKg~YD----~L~~Aea~~--Fl~~~~~er~DLi~AaD  196 (287)
T COG4976         125 PFRRMLDLGCGTGLTGEALRDMA--DRLTGVDISENMLAKAHEKGLYD----TLYVAEAVL--FLEDLTQERFDLIVAAD  196 (287)
T ss_pred             ccceeeecccCcCcccHhHHHHH--hhccCCchhHHHHHHHHhccchH----HHHHHHHHH--HhhhccCCcccchhhhh
Confidence            35789999999999999998884  34999999999999999976432    233444432  111134678999998  


Q ss_pred             ---------------ccccccceeeec---------ceEEecCCeEEEeeCHHHHHHHHHhCCCcEEEEEeE
Q 009871          153 ---------------ERLTGKDQKISE---------NFYVRGDGTRAFYFSNDFLTSLFKENGFDVEELGLC  200 (523)
Q Consensus       153 ---------------~~~~~~~~~~~~---------~~~~~~~g~~~~~~~~~~l~~ll~~~Gf~~~~~~~~  200 (523)
                                     ...+.+++.+.-         .|.+.|..+  |-++...++.++...||+++.++..
T Consensus       197 Vl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~R--yAH~~~YVr~~l~~~Gl~~i~~~~t  266 (287)
T COG4976         197 VLPYLGALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQR--YAHSESYVRALLAASGLEVIAIEDT  266 (287)
T ss_pred             HHHhhcchhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhh--hccchHHHHHHHHhcCceEEEeecc
Confidence                           122233332221         112222222  2348889999999999999887643

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.88  E-value=1.7e-08  Score=91.71  Aligned_cols=117  Identities=15%  Similarity=0.078  Sum_probs=80.3

Q ss_pred             cchhHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEee
Q 009871          316 LWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRL  395 (523)
Q Consensus       316 ~W~~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l  395 (523)
                      .|-++..+...+.+-....++.+|||||||||..+..+|.... +|+.+|..+...+.|++|+...+..    +|.+...
T Consensus        53 qtis~P~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~-~V~siEr~~~L~~~A~~~L~~lg~~----nV~v~~g  127 (209)
T COG2518          53 QTISAPHMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLVG-RVVSIERIEELAEQARRNLETLGYE----NVTVRHG  127 (209)
T ss_pred             ceecCcHHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHhC-eEEEEEEcHHHHHHHHHHHHHcCCC----ceEEEEC
Confidence            3444444444444555667899999999999977777777644 8999999999999999999997774    3666544


Q ss_pred             ecCCCCcchhhhhhc-CCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEe
Q 009871          396 EWGNRDHIEAIKEEN-NEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHI  460 (523)
Q Consensus       396 dw~~~~~~~~~~~~~-~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~  460 (523)
                      |-...        ++ ..+||.|+..-      ..+.+-+.+.+-|         ++||++++...
T Consensus       128 DG~~G--------~~~~aPyD~I~Vta------aa~~vP~~Ll~QL---------~~gGrlv~PvG  170 (209)
T COG2518         128 DGSKG--------WPEEAPYDRIIVTA------AAPEVPEALLDQL---------KPGGRLVIPVG  170 (209)
T ss_pred             CcccC--------CCCCCCcCEEEEee------ccCCCCHHHHHhc---------ccCCEEEEEEc
Confidence            43221        22 36899999762      2333334455556         67999888665

>TIGR00438 rrmJ cell division protein FtsJ

Probab=98.88  E-value=9.7e-08  Score=87.90  Aligned_cols=138  Identities=15%  Similarity=0.205  Sum_probs=87.4

Q ss_pred             HHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcC--CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCC
Q 009871          322 LMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGS--ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGN  399 (523)
Q Consensus       322 ~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~  399 (523)
                      -+.+.......+.++.+|||+|||+|+++..+++..  ..+|+++|+++.+           ..    ..+.+...|..+
T Consensus        19 ~~~~~~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~----~~i~~~~~d~~~   83 (188)
T TIGR00438        19 KLLQLNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PI----ENVDFIRGDFTD   83 (188)
T ss_pred             HHHHHHHHhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cC----CCceEEEeeCCC
Confidence            344555555666789999999999999888887764  3489999999854           11    234555556554


Q ss_pred             CCcchhhh-hhcCCCccEEEEccccC-----CCC------ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChh
Q 009871          400 RDHIEAIK-EENNEGFEVILGTDVSY-----IPE------AILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEP  467 (523)
Q Consensus       400 ~~~~~~~~-~~~~~~fD~Ii~~d~~y-----~~~------~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~  467 (523)
                      ......+. ..+..+||+|++.-..+     ...      ....+++.+.++|         +|||.+++... ......
T Consensus        84 ~~~~~~l~~~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~L---------kpgG~lvi~~~-~~~~~~  153 (188)
T TIGR00438        84 EEVLNKIRERVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVL---------KPKGNFVVKVF-QGEEID  153 (188)
T ss_pred             hhHHHHHHHHhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHc---------cCCCEEEEEEc-cCccHH
Confidence            32222221 13456899999853221     111      1367888899999         67999988542 234445


Q ss_pred             HHHHHHHHcCCEEEEEcC
Q 009871          468 SMLSAATQCGFRLVDKWP  485 (523)
Q Consensus       468 ~~~~~~~~~gf~~~~~~~  485 (523)
                      .++..+++. |....+..
T Consensus       154 ~~l~~l~~~-~~~~~~~~  170 (188)
T TIGR00438       154 EYLNELRKL-FEKVKVTK  170 (188)
T ss_pred             HHHHHHHhh-hceEEEeC
Confidence            677776664 65444433

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=98.87  E-value=9e-08  Score=99.87  Aligned_cols=145  Identities=12%  Similarity=0.017  Sum_probs=94.3

Q ss_pred             hHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecC
Q 009871          319 SAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWG  398 (523)
Q Consensus       319 ~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~  398 (523)
                      .+..|.+.+.......++.+|||+|||+|.++..++.. +.+|+++|+++.+++.|++|+..|++.    ++.+...|+.
T Consensus       276 ~~~~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~-~~~V~~vE~~~~av~~a~~n~~~~~~~----nv~~~~~d~~  350 (431)
T TIGR00479       276 QNEKLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQ-AKSVVGIEVVPESVEKAQQNAELNGIA----NVEFLAGTLE  350 (431)
T ss_pred             HHHHHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHh-CCEEEEEEcCHHHHHHHHHHHHHhCCC----ceEEEeCCHH
Confidence            34444555544444446689999999999888887765 468999999999999999999998863    5666655543


Q ss_pred             CCCcchhhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhHHHHHHHHcCC
Q 009871          399 NRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGF  478 (523)
Q Consensus       399 ~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~~~~~~~~gf  478 (523)
                      +.  +..+ .....+||+|+... -+. .....+++.+.+ +         ++++.+|++..+.  +...-+..+.+.||
T Consensus       351 ~~--l~~~-~~~~~~~D~vi~dP-Pr~-G~~~~~l~~l~~-l---------~~~~ivyvsc~p~--tlard~~~l~~~gy  413 (431)
T TIGR00479       351 TV--LPKQ-PWAGQIPDVLLLDP-PRK-GCAAEVLRTIIE-L---------KPERIVYVSCNPA--TLARDLEFLCKEGY  413 (431)
T ss_pred             HH--HHHH-HhcCCCCCEEEECc-CCC-CCCHHHHHHHHh-c---------CCCEEEEEcCCHH--HHHHHHHHHHHCCe
Confidence            21  1110 12235799999743 332 335666666554 4         4577777764332  22223455667899


Q ss_pred             EEEEEcC
Q 009871          479 RLVDKWP  485 (523)
Q Consensus       479 ~~~~~~~  485 (523)
                      ++..+..
T Consensus       414 ~~~~~~~  420 (431)
T TIGR00479       414 GITWVQP  420 (431)
T ss_pred             eEEEEEE
Confidence            9887754

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=98.86  E-value=4.6e-08  Score=97.54  Aligned_cols=124  Identities=11%  Similarity=0.052  Sum_probs=82.3

Q ss_pred             CCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCc
Q 009871          335 AGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGF  414 (523)
Q Consensus       335 ~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~f  414 (523)
                      ++.+|||+|||+|.++..++..+ .+|+++|+++.+++.+++|++.|++.    ++.+...|..+.      .......|
T Consensus       173 ~~~~VLDl~cG~G~~sl~la~~~-~~V~gvD~s~~av~~A~~n~~~~~l~----~v~~~~~D~~~~------~~~~~~~~  241 (315)
T PRK03522        173 PPRSMWDLFCGVGGFGLHCATPG-MQLTGIEISAEAIACAKQSAAELGLT----NVQFQALDSTQF------ATAQGEVP  241 (315)
T ss_pred             CCCEEEEccCCCCHHHHHHHhcC-CEEEEEeCCHHHHHHHHHHHHHcCCC----ceEEEEcCHHHH------HHhcCCCC
Confidence            56899999999999988888865 68999999999999999999998863    466655444321      11123479


Q ss_pred             cEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhHHHHHHHHcCCEEEEEcC
Q 009871          415 EVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLVDKWP  485 (523)
Q Consensus       415 D~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~~~~~~~~gf~~~~~~~  485 (523)
                      |+|+.... + ......+++.+.. +         .|+..+|++..+..... ++ ..+  .||++.++-.
T Consensus       242 D~Vv~dPP-r-~G~~~~~~~~l~~-~---------~~~~ivyvsc~p~t~~r-d~-~~l--~~y~~~~~~~  296 (315)
T PRK03522        242 DLVLVNPP-R-RGIGKELCDYLSQ-M---------APRFILYSSCNAQTMAK-DL-AHL--PGYRIERVQL  296 (315)
T ss_pred             eEEEECCC-C-CCccHHHHHHHHH-c---------CCCeEEEEECCcccchh-HH-hhc--cCcEEEEEEE
Confidence            99998644 2 1223344444433 2         35777777665533222 22 222  5899888754

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=98.85  E-value=3.2e-08  Score=80.61  Aligned_cols=102  Identities=25%  Similarity=0.379  Sum_probs=78.6

Q ss_pred             eEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCccEE
Q 009871          338 KVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVI  417 (523)
Q Consensus       338 ~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~fD~I  417 (523)
                      +|||+|||+|.++..++.....+++++|.++.++..++++...+..    ..+.+...++.+...      ....+||+|
T Consensus         1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~------~~~~~~d~i   70 (107)
T cd02440           1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLA----DNVEVLKGDAEELPP------EADESFDVI   70 (107)
T ss_pred             CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccc----cceEEEEcChhhhcc------ccCCceEEE
Confidence            5899999999888777775567999999999999998864443322    345666555554321      124689999


Q ss_pred             EEccccCC-CCChHHHHHHHHHHhhccCCCCCCCCCcEEEEE
Q 009871          418 LGTDVSYI-PEAILPLFATAKELTASSNKSLREDQQPAFILC  458 (523)
Q Consensus       418 i~~d~~y~-~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~  458 (523)
                      +++.+++. ......+++.+.+++         +++|.+++.
T Consensus        71 ~~~~~~~~~~~~~~~~l~~~~~~l---------~~~g~~~~~  103 (107)
T cd02440          71 ISDPPLHHLVEDLARFLEEARRLL---------KPGGVLVLT  103 (107)
T ss_pred             EEccceeehhhHHHHHHHHHHHHc---------CCCCEEEEE
Confidence            99999888 888999999999999         679998876

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=98.84  E-value=8.5e-08  Score=94.42  Aligned_cols=87  Identities=21%  Similarity=0.194  Sum_probs=61.7

Q ss_pred             CCCeEEEECCCccHHHHHHHhc-CCCEEEEEcCChHHHHHHHHHHHhc-CCCCCCCceEEEee-ecCCCCcchhhhhhcC
Q 009871          335 AGKKVLELGCGCGGICSMVAAG-SADLVVATDGDSIALDLLAQNVTAN-LKPPFLAKLITKRL-EWGNRDHIEAIKEENN  411 (523)
Q Consensus       335 ~~~~VLElG~G~G~l~~~~a~~-~~~~V~~~D~~~~~l~~~~~n~~~n-~~~~~~~~v~~~~l-dw~~~~~~~~~~~~~~  411 (523)
                      .+.+|||||||+|++..+++++ ...++++||+++.+++.|++|++.| ++.   .++.+..- +-.+  ....+ ....
T Consensus       114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~---~~I~~~~~~~~~~--i~~~i-~~~~  187 (321)
T PRK11727        114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLN---GAIRLRLQKDSKA--IFKGI-IHKN  187 (321)
T ss_pred             CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCc---CcEEEEEccchhh--hhhcc-cccC
Confidence            4579999999999887777765 4568999999999999999999999 665   45555321 1110  01000 0124


Q ss_pred             CCccEEEEccccCCCC
Q 009871          412 EGFEVILGTDVSYIPE  427 (523)
Q Consensus       412 ~~fD~Ii~~d~~y~~~  427 (523)
                      +.||+|+++..+|...
T Consensus       188 ~~fDlivcNPPf~~s~  203 (321)
T PRK11727        188 ERFDATLCNPPFHASA  203 (321)
T ss_pred             CceEEEEeCCCCcCcc
Confidence            5899999998887644

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=98.84  E-value=4.8e-09  Score=88.55  Aligned_cols=74  Identities=23%  Similarity=0.374  Sum_probs=62.1

Q ss_pred             CCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC--CCcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871           76 RKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISDDLSRQISPSSIDIVTM  152 (523)
Q Consensus        76 ~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~  152 (523)
                      +.+|||+|||+|.++..+++.+ ..+++|+|+++.+++.|+.+....  ..+++++++|+.+.  ...+++++||+|++
T Consensus         1 g~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~--~~~~~~~~~D~Iv~   76 (117)
T PF13659_consen    1 GDRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDL--PEPLPDGKFDLIVT   76 (117)
T ss_dssp             TEEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHH--HHTCTTT-EEEEEE
T ss_pred             CCEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhc--hhhccCceeEEEEE
Confidence            4589999999999999999997 688999999999999999977543  35799999999754  22367899999999

...

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=98.84  E-value=4.4e-08  Score=96.89  Aligned_cols=109  Identities=17%  Similarity=0.081  Sum_probs=74.7

Q ss_pred             HHhcCCCCCCCCeEEEECCCccHHHHHHHhcCC--CEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcc
Q 009871          326 VLARNPTIVAGKKVLELGCGCGGICSMVAAGSA--DLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHI  403 (523)
Q Consensus       326 ~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~--~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~  403 (523)
                      ++.+.....++.+|||+|||+|.++..+++...  ..|+++|+++++++.+++|+..++..    ++.+...|..+.  .
T Consensus        71 ~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~----nV~~i~gD~~~~--~  144 (322)
T PRK13943         71 LFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIE----NVIFVCGDGYYG--V  144 (322)
T ss_pred             HHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCC----cEEEEeCChhhc--c
Confidence            343444455788999999999988888887643  37999999999999999999987763    345444332211  0


Q ss_pred             hhhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEe
Q 009871          404 EAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHI  460 (523)
Q Consensus       404 ~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~  460 (523)
                           ....+||+|+.+-      ....+...+.+.|         +|+|.+++...
T Consensus       145 -----~~~~~fD~Ii~~~------g~~~ip~~~~~~L---------kpgG~Lvv~~~  181 (322)
T PRK13943        145 -----PEFAPYDVIFVTV------GVDEVPETWFTQL---------KEGGRVIVPIN  181 (322)
T ss_pred             -----cccCCccEEEECC------chHHhHHHHHHhc---------CCCCEEEEEeC
Confidence                 1124799999862      2223344566678         67998887543

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=98.83  E-value=6.7e-08  Score=101.09  Aligned_cols=144  Identities=21%  Similarity=0.164  Sum_probs=94.6

Q ss_pred             hHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcC--CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeee
Q 009871          319 SAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGS--ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLE  396 (523)
Q Consensus       319 ~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ld  396 (523)
                      ++.+++.++.    ..++.+|||+|||+|+.+..++...  ..+|+++|+++.+++.+++|++.+++.    .+.+...|
T Consensus       238 ~s~lv~~~l~----~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~----~v~~~~~D  309 (444)
T PRK14902        238 SSMLVAPALD----PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLT----NIETKALD  309 (444)
T ss_pred             HHHHHHHHhC----CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC----eEEEEeCC
Confidence            4455555552    3467899999999999998888763  468999999999999999999998764    36666555


Q ss_pred             cCCCCcchhhhhhcCCCccEEEEccccCCCC---------------C-------hHHHHHHHHHHhhccCCCCCCCCCcE
Q 009871          397 WGNRDHIEAIKEENNEGFEVILGTDVSYIPE---------------A-------ILPLFATAKELTASSNKSLREDQQPA  454 (523)
Q Consensus       397 w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~---------------~-------~~~l~~~l~~ll~~~~~~~~~~~~g~  454 (523)
                      ..+..  .   .+ .++||+|++....+...               .       ...+++.+.++|         +|||.
T Consensus       310 ~~~~~--~---~~-~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~L---------kpGG~  374 (444)
T PRK14902        310 ARKVH--E---KF-AEKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYL---------KKGGI  374 (444)
T ss_pred             ccccc--c---hh-cccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHc---------CCCCE
Confidence            54321  0   12 25899999743222110               1       135788888888         67999


Q ss_pred             EEEEEeecCC--ChhHHHHHHHHc-CCEEEEEcC
Q 009871          455 FILCHIFRQV--DEPSMLSAATQC-GFRLVDKWP  485 (523)
Q Consensus       455 ~~l~~~~r~~--~~~~~~~~~~~~-gf~~~~~~~  485 (523)
                      ++.+...-..  .+..+...++++ +|++..+..
T Consensus       375 lvystcs~~~~Ene~vv~~~l~~~~~~~~~~~~~  408 (444)
T PRK14902        375 LVYSTCTIEKEENEEVIEAFLEEHPEFELVPLQH  408 (444)
T ss_pred             EEEEcCCCChhhhHHHHHHHHHhCCCcEEecccc
Confidence            8865443222  222333445555 488766543

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=98.83  E-value=6.3e-08  Score=100.63  Aligned_cols=141  Identities=18%  Similarity=0.141  Sum_probs=91.1

Q ss_pred             hHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCC-CEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeec
Q 009871          319 SAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSA-DLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEW  397 (523)
Q Consensus       319 ~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~-~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw  397 (523)
                      ++...+.++    ...+|.+|||+|||+|+.+..++..+. .+|+++|+++.+++.+++|+..++..     +.+...|.
T Consensus       232 ~s~~~~~~l----~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~-----~~~~~~D~  302 (427)
T PRK10901        232 AAQLAATLL----APQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLK-----ATVIVGDA  302 (427)
T ss_pred             HHHHHHHHc----CCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCC-----eEEEEcCc
Confidence            344445554    234788999999999999988888754 58999999999999999999987763     33433333


Q ss_pred             CCCCcchhhhhhcCCCccEEEEccccCC-------C--------C-------ChHHHHHHHHHHhhccCCCCCCCCCcEE
Q 009871          398 GNRDHIEAIKEENNEGFEVILGTDVSYI-------P--------E-------AILPLFATAKELTASSNKSLREDQQPAF  455 (523)
Q Consensus       398 ~~~~~~~~~~~~~~~~fD~Ii~~d~~y~-------~--------~-------~~~~l~~~l~~ll~~~~~~~~~~~~g~~  455 (523)
                      .+.   ..  .+...+||.|++......       +        +       ....++..+.++|         +|||.+
T Consensus       303 ~~~---~~--~~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~L---------kpGG~l  368 (427)
T PRK10901        303 RDP---AQ--WWDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLL---------KPGGTL  368 (427)
T ss_pred             ccc---hh--hcccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhc---------CCCCEE
Confidence            221   00  012457999996432211       0        1       1236788888888         779998


Q ss_pred             EEEEee--cCCChhHHHHHHHHc-CCEEEE
Q 009871          456 ILCHIF--RQVDEPSMLSAATQC-GFRLVD  482 (523)
Q Consensus       456 ~l~~~~--r~~~~~~~~~~~~~~-gf~~~~  482 (523)
                      +++...  +...+..+...++++ +|++..
T Consensus       369 vystcs~~~~Ene~~v~~~l~~~~~~~~~~  398 (427)
T PRK10901        369 LYATCSILPEENEQQIKAFLARHPDAELLD  398 (427)
T ss_pred             EEEeCCCChhhCHHHHHHHHHhCCCCEEec
Confidence            876543  233334444455554 677654

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=98.83  E-value=4.5e-08  Score=91.44  Aligned_cols=146  Identities=11%  Similarity=0.019  Sum_probs=91.4

Q ss_pred             hHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCC-----------CC
Q 009871          319 SAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPP-----------FL  387 (523)
Q Consensus       319 ~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~-----------~~  387 (523)
                      ....|.+++.... ..++.+|||+|||.|.-+..+|.+|. .|+++|+|+.+++.+..   .+++..           ..
T Consensus        19 p~~~l~~~~~~l~-~~~~~rvLd~GCG~G~da~~LA~~G~-~V~gvD~S~~Ai~~~~~---~~~~~~~~~~~~~~~~~~~   93 (213)
T TIGR03840        19 VNPLLVKHWPALG-LPAGARVFVPLCGKSLDLAWLAEQGH-RVLGVELSEIAVEQFFA---ENGLTPTVTQQGEFTRYRA   93 (213)
T ss_pred             CCHHHHHHHHhhC-CCCCCeEEEeCCCchhHHHHHHhCCC-eEEEEeCCHHHHHHHHH---HcCCCcceeccccceeeec
Confidence            3456667765532 13667999999999999999998865 69999999999997633   222210           11


Q ss_pred             CceEEEeeecCCCCcchhhhhhcCCCccEEEEccccCC--CCChHHHHHHHHHHhhccCCCCCCCCCcE-EEEEEeec--
Q 009871          388 AKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYI--PEAILPLFATAKELTASSNKSLREDQQPA-FILCHIFR--  462 (523)
Q Consensus       388 ~~v~~~~ldw~~~~~~~~~~~~~~~~fD~Ii~~d~~y~--~~~~~~l~~~l~~ll~~~~~~~~~~~~g~-~~l~~~~r--  462 (523)
                      .++++...|..+...      ...+.||.|+-.-++.+  ++.....++.+.++|         +|||. +++++...  
T Consensus        94 ~~v~~~~~D~~~~~~------~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lL---------kpgG~~ll~~~~~~~~  158 (213)
T TIGR03840        94 GNIEIFCGDFFALTA------ADLGPVDAVYDRAALIALPEEMRQRYAAHLLALL---------PPGARQLLITLDYDQS  158 (213)
T ss_pred             CceEEEEccCCCCCc------ccCCCcCEEEechhhccCCHHHHHHHHHHHHHHc---------CCCCeEEEEEEEcCCC
Confidence            345555555443211      01247999997655443  445677899999999         77886 44544321  


Q ss_pred             -------CCChhHHHHHHHHcCCEEEEEcC
Q 009871          463 -------QVDEPSMLSAATQCGFRLVDKWP  485 (523)
Q Consensus       463 -------~~~~~~~~~~~~~~gf~~~~~~~  485 (523)
                             ..+..++.+.+. .+|++..+..
T Consensus       159 ~~~gpp~~~~~~eL~~~f~-~~~~i~~~~~  187 (213)
T TIGR03840       159 EMAGPPFSVSPAEVEALYG-GHYEIELLES  187 (213)
T ss_pred             CCCCcCCCCCHHHHHHHhc-CCceEEEEee
Confidence                   123344444443 3567666654

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=98.83  E-value=1.8e-08  Score=105.18  Aligned_cols=82  Identities=18%  Similarity=0.206  Sum_probs=64.0

Q ss_pred             hhhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC-CCcEEEEEeeccCCccCCCCCCCce
Q 009871           69 RYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT-ETRVSTFVCDLISDDLSRQISPSSI  147 (523)
Q Consensus        69 ~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~-~~~v~~~~~d~~~~~~~~~~~~~~f  147 (523)
                      +++...++.+|||+|||+|.++..+++..  .+|+|+|+|+.|++.|+++.... ..+++++++|+.+.-...++.+++|
T Consensus       291 ~~l~~~~~~~VLDlgcGtG~~sl~la~~~--~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~f  368 (443)
T PRK13168        291 EWLDPQPGDRVLDLFCGLGNFTLPLARQA--AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGF  368 (443)
T ss_pred             HHhcCCCCCEEEEEeccCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCC
Confidence            34444567899999999999999999884  57999999999999999987533 3579999999974310112445689


Q ss_pred             eEEEE
Q 009871          148 DIVTM  152 (523)
Q Consensus       148 D~V~~  152 (523)
                      |+|++
T Consensus       369 D~Vi~  373 (443)
T PRK13168        369 DKVLL  373 (443)
T ss_pred             CEEEE
Confidence            99998

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=98.82  E-value=1.1e-08  Score=97.91  Aligned_cols=93  Identities=17%  Similarity=0.228  Sum_probs=68.8

Q ss_pred             cccccchhhhHHHH-hhhhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCC-cEEEEEe
Q 009871           54 DRFFKDRHYLDKEW-GRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTET-RVSTFVC  131 (523)
Q Consensus        54 ~~f~~~~~~l~~~~-~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~-~v~~~~~  131 (523)
                      +-|.+++-..-.++ .+.++...+.+|||+|||.|.++..+++.+|..+|+-+|+|..+|+.|+++...+.. +..+...
T Consensus       136 GVFS~~~lD~GS~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s  215 (300)
T COG2813         136 GVFSRDKLDKGSRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWAS  215 (300)
T ss_pred             CCCcCCCcChHHHHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEe
Confidence            34444443333333 344555556699999999999999999999999999999999999999998865433 3356666


Q ss_pred             eccCCccCCCCCCCceeEEEE
Q 009871          132 DLISDDLSRQISPSSIDIVTM  152 (523)
Q Consensus       132 d~~~~~~~~~~~~~~fD~V~~  152 (523)
                      |+..     +..+ +||.|+|
T Consensus       216 ~~~~-----~v~~-kfd~Iis  230 (300)
T COG2813         216 NLYE-----PVEG-KFDLIIS  230 (300)
T ss_pred             cccc-----cccc-cccEEEe
Confidence            6654     3444 9999999

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=98.82  E-value=2.9e-08  Score=89.29  Aligned_cols=121  Identities=14%  Similarity=0.176  Sum_probs=80.9

Q ss_pred             CCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCc
Q 009871          335 AGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGF  414 (523)
Q Consensus       335 ~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~f  414 (523)
                      ...-|||||||+|.-+..+...| ..++++|+|+.||+.|.+.--.       +  .....|-++.      .++.++.|
T Consensus        50 ~~~~iLDIGCGsGLSg~vL~~~G-h~wiGvDiSpsML~~a~~~e~e-------g--dlil~DMG~G------lpfrpGtF  113 (270)
T KOG1541|consen   50 KSGLILDIGCGSGLSGSVLSDSG-HQWIGVDISPSMLEQAVERELE-------G--DLILCDMGEG------LPFRPGTF  113 (270)
T ss_pred             CCcEEEEeccCCCcchheeccCC-ceEEeecCCHHHHHHHHHhhhh-------c--CeeeeecCCC------CCCCCCcc
Confidence            46689999999994444455555 6799999999999999862111       1  1223344433      25678999


Q ss_pred             cEEEEccccCC---------C--CChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCCh-hHHHHHHHHcCCEE
Q 009871          415 EVILGTDVSYI---------P--EAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDE-PSMLSAATQCGFRL  480 (523)
Q Consensus       415 D~Ii~~d~~y~---------~--~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~-~~~~~~~~~~gf~~  480 (523)
                      |-+|+-..+.+         .  .-+..++.+|..+|         +.++..++-+...+... +.+...+.++||.-
T Consensus       114 Dg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l---------~rg~raV~QfYpen~~q~d~i~~~a~~aGF~G  182 (270)
T KOG1541|consen  114 DGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCL---------KRGARAVLQFYPENEAQIDMIMQQAMKAGFGG  182 (270)
T ss_pred             ceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhh---------ccCceeEEEecccchHHHHHHHHHHHhhccCC
Confidence            99886544433         1  13455688888888         56888888776655443 45677778888763

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=98.80  E-value=2.1e-08  Score=104.15  Aligned_cols=80  Identities=14%  Similarity=0.170  Sum_probs=65.4

Q ss_pred             hcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEE
Q 009871           71 FSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIV  150 (523)
Q Consensus        71 ~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V  150 (523)
                      +...++.+|||+|||+|..+..+++..++.+|+|+|+|+.|++.++++....+.++.++++|+.+..  ..+++++||.|
T Consensus       240 l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~--~~~~~~~fD~V  317 (427)
T PRK10901        240 LAPQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPA--QWWDGQPFDRI  317 (427)
T ss_pred             cCCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccch--hhcccCCCCEE
Confidence            3446788999999999999999999876678999999999999999987655555789999997541  11345789999


Q ss_pred             EE
Q 009871          151 TM  152 (523)
Q Consensus       151 ~~  152 (523)
                      ++
T Consensus       318 l~  319 (427)
T PRK10901        318 LL  319 (427)
T ss_pred             EE
Confidence            97

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=98.79  E-value=1e-07  Score=88.57  Aligned_cols=136  Identities=13%  Similarity=0.108  Sum_probs=99.6

Q ss_pred             HHHHhcCCCCCCCCeEEEECCCccHHHHHHHh-cCC-CEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCC
Q 009871          324 AAVLARNPTIVAGKKVLELGCGCGGICSMVAA-GSA-DLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRD  401 (523)
Q Consensus       324 a~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~-~~~-~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~  401 (523)
                      +.++.....+.+|.+|||.|+|+|.++..+|. .++ .+|+..|+.++.++.|++|+..-++.   +++.....|..+..
T Consensus        83 ~~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~---d~v~~~~~Dv~~~~  159 (256)
T COG2519          83 AGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLG---DRVTLKLGDVREGI  159 (256)
T ss_pred             HHHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccc---cceEEEeccccccc
Confidence            34445556788999999999999999888885 344 59999999999999999999997665   33665554444331


Q ss_pred             cchhhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhHHHHHHHHcCCEEE
Q 009871          402 HIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLV  481 (523)
Q Consensus       402 ~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~~~~~~~~gf~~~  481 (523)
                              ....||.|+. |    ....-..+..++.+|         +|||.+.+- .+--.......+.+++.||.-.
T Consensus       160 --------~~~~vDav~L-D----mp~PW~~le~~~~~L---------kpgg~~~~y-~P~veQv~kt~~~l~~~g~~~i  216 (256)
T COG2519         160 --------DEEDVDAVFL-D----LPDPWNVLEHVSDAL---------KPGGVVVVY-SPTVEQVEKTVEALRERGFVDI  216 (256)
T ss_pred             --------cccccCEEEE-c----CCChHHHHHHHHHHh---------CCCcEEEEE-cCCHHHHHHHHHHHHhcCccch
Confidence                    2348999987 3    456777899999999         667665443 3322233567788889999888


Q ss_pred             EEcC
Q 009871          482 DKWP  485 (523)
Q Consensus       482 ~~~~  485 (523)
                      +.|+
T Consensus       217 e~~E  220 (256)
T COG2519         217 EAVE  220 (256)
T ss_pred             hhhe
Confidence            8776

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=98.79  E-value=1e-07  Score=95.67  Aligned_cols=109  Identities=11%  Similarity=0.042  Sum_probs=81.2

Q ss_pred             CCCeEEEECCCccHHHHHHHhcCC-CEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCC
Q 009871          335 AGKKVLELGCGCGGICSMVAAGSA-DLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG  413 (523)
Q Consensus       335 ~~~~VLElG~G~G~l~~~~a~~~~-~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~  413 (523)
                      .+..+||||||+|.....+|+..+ ..++|+|+++.+++.+.+++..+++.    ++.+...|....     +..+++++
T Consensus       122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~----NV~~i~~DA~~l-----l~~~~~~s  192 (390)
T PRK14121        122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLK----NLLIINYDARLL-----LELLPSNS  192 (390)
T ss_pred             CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCC----cEEEEECCHHHh-----hhhCCCCc
Confidence            566999999999999888888753 48999999999999999999987763    466655443221     11345679


Q ss_pred             ccEEEEccccCCCC------ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee
Q 009871          414 FEVILGTDVSYIPE------AILPLFATAKELTASSNKSLREDQQPAFILCHIF  461 (523)
Q Consensus       414 fD~Ii~~d~~y~~~------~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~  461 (523)
                      +|.|+..-..-++.      ..+.+++.+.++|         ++||.+.+..-.
T Consensus       193 ~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvL---------kpGG~l~l~TD~  237 (390)
T PRK14121        193 VEKIFVHFPVPWDKKPHRRVISEDFLNEALRVL---------KPGGTLELRTDS  237 (390)
T ss_pred             eeEEEEeCCCCccccchhhccHHHHHHHHHHHc---------CCCcEEEEEEEC
Confidence            99999763222221      1268999999999         779999887644

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=98.78  E-value=2e-07  Score=96.67  Aligned_cols=130  Identities=15%  Similarity=0.128  Sum_probs=86.8

Q ss_pred             CCCCeEEEECCCccHHHHHHHhcC--CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcC
Q 009871          334 VAGKKVLELGCGCGGICSMVAAGS--ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENN  411 (523)
Q Consensus       334 ~~~~~VLElG~G~G~l~~~~a~~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~  411 (523)
                      .+|.+|||+|||+|+.+..++...  ..+|+++|+++.+++.+++|+...++.    .+.+...|..+..      ....
T Consensus       236 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~----~v~~~~~Da~~l~------~~~~  305 (431)
T PRK14903        236 EPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLS----SIEIKIADAERLT------EYVQ  305 (431)
T ss_pred             CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCC----eEEEEECchhhhh------hhhh
Confidence            478899999999999988888763  468999999999999999999987663    3555555543221      1124


Q ss_pred             CCccEEEEccccCCCC----------------------ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCCh-hH
Q 009871          412 EGFEVILGTDVSYIPE----------------------AILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDE-PS  468 (523)
Q Consensus       412 ~~fD~Ii~~d~~y~~~----------------------~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~-~~  468 (523)
                      ++||.|+..-......                      ....++..+.++|         +|||.++.+...-...+ +.
T Consensus       306 ~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~L---------kpGG~LvYsTCs~~~eEne~  376 (431)
T PRK14903        306 DTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLL---------EKGGILLYSTCTVTKEENTE  376 (431)
T ss_pred             ccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhc---------CCCCEEEEEECCCChhhCHH
Confidence            5899999732221110                      1245577777888         67999887776643333 33


Q ss_pred             HHHH-HHH-cCCEEEE
Q 009871          469 MLSA-ATQ-CGFRLVD  482 (523)
Q Consensus       469 ~~~~-~~~-~gf~~~~  482 (523)
                      +++. +++ -+|++..
T Consensus       377 vv~~fl~~~~~~~~~~  392 (431)
T PRK14903        377 VVKRFVYEQKDAEVID  392 (431)
T ss_pred             HHHHHHHhCCCcEEec
Confidence            4443 333 3676544

>PLN02672 methionine S-methyltransferase

Probab=98.78  E-value=1.9e-08  Score=112.61  Aligned_cols=72  Identities=26%  Similarity=0.403  Sum_probs=60.6

Q ss_pred             CCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC-----------------CCcEEEEEeeccCCcc
Q 009871           76 RKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT-----------------ETRVSTFVCDLISDDL  138 (523)
Q Consensus        76 ~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~-----------------~~~v~~~~~d~~~~~~  138 (523)
                      +.+|||+|||+|.++..+++.+++.+|+|+|+|+.|++.|++|...+                 ..+++++++|+.+.  
T Consensus       119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~--  196 (1082)
T PLN02672        119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGY--  196 (1082)
T ss_pred             CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhh--
Confidence            46899999999999999999988889999999999999999987532                 13699999999753  


Q ss_pred             CCCCCC--CceeEEEE
Q 009871          139 SRQISP--SSIDIVTM  152 (523)
Q Consensus       139 ~~~~~~--~~fD~V~~  152 (523)
                         +.+  ..||+|++
T Consensus       197 ---~~~~~~~fDlIVS  209 (1082)
T PLN02672        197 ---CRDNNIELDRIVG  209 (1082)
T ss_pred             ---ccccCCceEEEEE
Confidence               222  36999999

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=98.78  E-value=6.7e-08  Score=86.47  Aligned_cols=111  Identities=21%  Similarity=0.208  Sum_probs=79.4

Q ss_pred             CCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcC-
Q 009871          333 IVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENN-  411 (523)
Q Consensus       333 ~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~-  411 (523)
                      ...|.+||||-||+|.+++.++++|+.+|+++|.|..++..+++|++.-+...   .+.+...|-     ...+..... 
T Consensus        41 ~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~---~~~~~~~da-----~~~L~~~~~~  112 (187)
T COG0742          41 EIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEG---EARVLRNDA-----LRALKQLGTR  112 (187)
T ss_pred             ccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCcc---ceEEEeecH-----HHHHHhcCCC
Confidence            35899999999999999999999999999999999999999999998866542   233322221     111112222 


Q ss_pred             CCccEEEEccccCCCCChHHHHHHHH----HHhhccCCCCCCCCCcEEEEEEee
Q 009871          412 EGFEVILGTDVSYIPEAILPLFATAK----ELTASSNKSLREDQQPAFILCHIF  461 (523)
Q Consensus       412 ~~fD~Ii~~d~~y~~~~~~~l~~~l~----~ll~~~~~~~~~~~~g~~~l~~~~  461 (523)
                      .+||+|+. |..|.....+..+..+.    .+|         +|++.+++-+..
T Consensus       113 ~~FDlVfl-DPPy~~~l~~~~~~~~~~~~~~~L---------~~~~~iv~E~~~  156 (187)
T COG0742         113 EPFDLVFL-DPPYAKGLLDKELALLLLEENGWL---------KPGALIVVEHDK  156 (187)
T ss_pred             CcccEEEe-CCCCccchhhHHHHHHHHHhcCCc---------CCCcEEEEEeCC
Confidence            24999998 88898776654444444    456         567777776544

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=98.77  E-value=1.7e-07  Score=90.91  Aligned_cols=127  Identities=13%  Similarity=0.069  Sum_probs=83.7

Q ss_pred             CCCCeEEEECCCccHHHHHHHhcC--CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcC
Q 009871          334 VAGKKVLELGCGCGGICSMVAAGS--ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENN  411 (523)
Q Consensus       334 ~~~~~VLElG~G~G~l~~~~a~~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~  411 (523)
                      .+|.+|||+|||+|+.+..+++..  ...|+++|+++.+++.+++|++.++..    .+.+...|....       ....
T Consensus        70 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~----~v~~~~~D~~~~-------~~~~  138 (264)
T TIGR00446        70 DPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVL----NVAVTNFDGRVF-------GAAV  138 (264)
T ss_pred             CCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCC----cEEEecCCHHHh-------hhhc
Confidence            478899999999999998887763  348999999999999999999998763    355544443211       1113


Q ss_pred             CCccEEEEccccCCC---------------C-------ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCCh-hH
Q 009871          412 EGFEVILGTDVSYIP---------------E-------AILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDE-PS  468 (523)
Q Consensus       412 ~~fD~Ii~~d~~y~~---------------~-------~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~-~~  468 (523)
                      +.||+|+........               +       ....+++.+.++|         +|||.++.+...-...+ +.
T Consensus       139 ~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~l---------kpgG~lvYstcs~~~~Ene~  209 (264)
T TIGR00446       139 PKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDAL---------KPGGVLVYSTCSLEPEENEA  209 (264)
T ss_pred             cCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhc---------CCCCEEEEEeCCCChHHHHH
Confidence            469999964222211               1       1234777777788         67998887765544333 34


Q ss_pred             HHHHH-HHc-CCEE
Q 009871          469 MLSAA-TQC-GFRL  480 (523)
Q Consensus       469 ~~~~~-~~~-gf~~  480 (523)
                      ..+.+ +++ ++.+
T Consensus       210 vv~~~l~~~~~~~~  223 (264)
T TIGR00446       210 VVDYLLEKRPDVVE  223 (264)
T ss_pred             HHHHHHHhCCCcEE
Confidence            45444 333 4543

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=98.77  E-value=1.2e-08  Score=103.33  Aligned_cols=120  Identities=10%  Similarity=0.126  Sum_probs=76.0

Q ss_pred             CeEEEECCCccHHHHHHHhcCC--CEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCc
Q 009871          337 KKVLELGCGCGGICSMVAAGSA--DLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGF  414 (523)
Q Consensus       337 ~~VLElG~G~G~l~~~~a~~~~--~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~f  414 (523)
                      ++|+|..+|.|+++.++.....  -+|+-++. +..+...    ..-|+       --...||.+.-      +.-+..|
T Consensus       367 RNVMDMnAg~GGFAAAL~~~~VWVMNVVP~~~-~ntL~vI----ydRGL-------IG~yhDWCE~f------sTYPRTY  428 (506)
T PF03141_consen  367 RNVMDMNAGYGGFAAALIDDPVWVMNVVPVSG-PNTLPVI----YDRGL-------IGVYHDWCEAF------STYPRTY  428 (506)
T ss_pred             eeeeeecccccHHHHHhccCCceEEEecccCC-CCcchhh----hhccc-------chhccchhhcc------CCCCcch
Confidence            5899999999988777766531  24444432 3333332    22122       22356887652      2236799


Q ss_pred             cEEEEccccCC---CCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhHHHHHHHHcCCEEEEEcC
Q 009871          415 EVILGTDVSYI---PEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLVDKWP  485 (523)
Q Consensus       415 D~Ii~~d~~y~---~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~~~~~~~~gf~~~~~~~  485 (523)
                      |+|-++.++-.   .-.+..++-.+.++|         .|+|.+++-...  .-...+...+....|++.....
T Consensus       429 DLlHA~~lfs~~~~rC~~~~illEmDRIL---------RP~G~~iiRD~~--~vl~~v~~i~~~lrW~~~~~d~  491 (506)
T PF03141_consen  429 DLLHADGLFSLYKDRCEMEDILLEMDRIL---------RPGGWVIIRDTV--DVLEKVKKIAKSLRWEVRIHDT  491 (506)
T ss_pred             hheehhhhhhhhcccccHHHHHHHhHhhc---------CCCceEEEeccH--HHHHHHHHHHHhCcceEEEEec
Confidence            99999866532   457889999999999         789999984322  1123455566667777765544

; GO: 0008168 methyltransferase activity

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=98.77  E-value=1.5e-07  Score=98.07  Aligned_cols=143  Identities=17%  Similarity=0.140  Sum_probs=91.5

Q ss_pred             hHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcC--CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeee
Q 009871          319 SAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGS--ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLE  396 (523)
Q Consensus       319 ~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ld  396 (523)
                      ++.+++..+    ...+|.+|||+|||+|+.+..++...  ..+|+++|+++.+++.+++|+..++..    .+.+...|
T Consensus       240 ~s~l~~~~l----~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~----~v~~~~~D  311 (434)
T PRK14901        240 SAQLVAPLL----DPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLK----SIKILAAD  311 (434)
T ss_pred             HHHHHHHHh----CCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCC----eEEEEeCC
Confidence            344455544    23468899999999999998888763  358999999999999999999998774    35555444


Q ss_pred             cCCCCcchhhhhhcCCCccEEEEcc------ccCC-CC--------C-------hHHHHHHHHHHhhccCCCCCCCCCcE
Q 009871          397 WGNRDHIEAIKEENNEGFEVILGTD------VSYI-PE--------A-------ILPLFATAKELTASSNKSLREDQQPA  454 (523)
Q Consensus       397 w~~~~~~~~~~~~~~~~fD~Ii~~d------~~y~-~~--------~-------~~~l~~~l~~ll~~~~~~~~~~~~g~  454 (523)
                      -.+..   .......++||.|+...      ++.. ++        .       ...++..+.++|         +|||.
T Consensus       312 ~~~~~---~~~~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l---------kpgG~  379 (434)
T PRK14901        312 SRNLL---ELKPQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLL---------KPGGT  379 (434)
T ss_pred             hhhcc---cccccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhc---------CCCCE
Confidence            32211   00001245899999632      1111 11        1       356777888888         67998


Q ss_pred             EEEEEeec--CCChhHHHHHHHHc-CCEEE
Q 009871          455 FILCHIFR--QVDEPSMLSAATQC-GFRLV  481 (523)
Q Consensus       455 ~~l~~~~r--~~~~~~~~~~~~~~-gf~~~  481 (523)
                      ++.+...-  ...+..+...++++ +|++.
T Consensus       380 lvystcsi~~~Ene~~v~~~l~~~~~~~~~  409 (434)
T PRK14901        380 LVYATCTLHPAENEAQIEQFLARHPDWKLE  409 (434)
T ss_pred             EEEEeCCCChhhHHHHHHHHHHhCCCcEec
Confidence            87665332  22233455556665 57654

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=98.77  E-value=8.2e-08  Score=93.78  Aligned_cols=106  Identities=15%  Similarity=0.159  Sum_probs=71.2

Q ss_pred             HHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcC----CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecC
Q 009871          323 MAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGS----ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWG  398 (523)
Q Consensus       323 la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~----~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~  398 (523)
                      +++.+..... ..+.+|||+|||+|.++..++...    ...|+++|+|+.|++.|+++.         ..+.+...|..
T Consensus        74 i~~~l~~~l~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~---------~~~~~~~~d~~  143 (272)
T PRK11088         74 VANLLAERLD-EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY---------PQVTFCVASSH  143 (272)
T ss_pred             HHHHHHHhcC-CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC---------CCCeEEEeecc
Confidence            4444543322 245689999999998887777653    237999999999999987652         12334433332


Q ss_pred             CCCcchhhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee
Q 009871          399 NRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIF  461 (523)
Q Consensus       399 ~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~  461 (523)
                      +.       ++.+++||+|++.   +.+    ..++.+.++|         +|||.+++....
T Consensus       144 ~l-------p~~~~sfD~I~~~---~~~----~~~~e~~rvL---------kpgG~li~~~p~  183 (272)
T PRK11088        144 RL-------PFADQSLDAIIRI---YAP----CKAEELARVV---------KPGGIVITVTPG  183 (272)
T ss_pred             cC-------CCcCCceeEEEEe---cCC----CCHHHHHhhc---------cCCCEEEEEeCC
Confidence            21       2345789999986   333    3467888999         779999887543

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=98.75  E-value=2.4e-08  Score=92.65  Aligned_cols=111  Identities=15%  Similarity=0.097  Sum_probs=73.4

Q ss_pred             HHHHhcCCCCCCCCeEEEECCCccHHHHHHHhc-CC-CEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCC
Q 009871          324 AAVLARNPTIVAGKKVLELGCGCGGICSMVAAG-SA-DLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRD  401 (523)
Q Consensus       324 a~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~-~~-~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~  401 (523)
                      ...+.+...+.+|.+|||||||||..+.+++.. +. .+|+++|.++.+++.|++|+...+..    ++.+...|-... 
T Consensus        61 ~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~----nv~~~~gdg~~g-  135 (209)
T PF01135_consen   61 VARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGID----NVEVVVGDGSEG-  135 (209)
T ss_dssp             HHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTH----SEEEEES-GGGT-
T ss_pred             HHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccC----ceeEEEcchhhc-
Confidence            333444445778999999999999888888876 33 37999999999999999999987663    566655442211 


Q ss_pred             cchhhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEe
Q 009871          402 HIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHI  460 (523)
Q Consensus       402 ~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~  460 (523)
                       .     -...+||.|+..-...      .+-..+.+.|         ++||++++...
T Consensus       136 -~-----~~~apfD~I~v~~a~~------~ip~~l~~qL---------~~gGrLV~pi~  173 (209)
T PF01135_consen  136 -W-----PEEAPFDRIIVTAAVP------EIPEALLEQL---------KPGGRLVAPIG  173 (209)
T ss_dssp             -T-----GGG-SEEEEEESSBBS------S--HHHHHTE---------EEEEEEEEEES
T ss_pred             -c-----ccCCCcCEEEEeeccc------hHHHHHHHhc---------CCCcEEEEEEc
Confidence             0     0135899999874332      2234455667         56999888665

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=98.75  E-value=3.2e-07  Score=95.91  Aligned_cols=143  Identities=17%  Similarity=0.120  Sum_probs=91.8

Q ss_pred             ccchhHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhc--CCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEE
Q 009871          315 MLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAG--SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLIT  392 (523)
Q Consensus       315 ~~W~~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~--~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~  392 (523)
                      .+++.+..++..+..   ..+|.+|||+|||+|+.+..++..  ...+|+++|+++.+++.+++|+..+++.    .+.+
T Consensus       233 ~vqd~~s~l~~~~l~---~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~----~v~~  305 (445)
T PRK14904        233 SVQNPTQALACLLLN---PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGIT----IIET  305 (445)
T ss_pred             EEeCHHHHHHHHhcC---CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCC----eEEE
Confidence            456544444433332   347889999999999888877764  2458999999999999999999987763    4555


Q ss_pred             EeeecCCCCcchhhhhhcCCCccEEEEccccC--------------CC--C-------ChHHHHHHHHHHhhccCCCCCC
Q 009871          393 KRLEWGNRDHIEAIKEENNEGFEVILGTDVSY--------------IP--E-------AILPLFATAKELTASSNKSLRE  449 (523)
Q Consensus       393 ~~ldw~~~~~~~~~~~~~~~~fD~Ii~~d~~y--------------~~--~-------~~~~l~~~l~~ll~~~~~~~~~  449 (523)
                      ...|..+.        .+..+||+|+. |+.+              ..  +       ....++..+.++|         
T Consensus       306 ~~~Da~~~--------~~~~~fD~Vl~-D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~l---------  367 (445)
T PRK14904        306 IEGDARSF--------SPEEQPDAILL-DAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLL---------  367 (445)
T ss_pred             EeCccccc--------ccCCCCCEEEE-cCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhc---------
Confidence            55444321        12357999995 2211              10  1       1235788888888         


Q ss_pred             CCCcEEEEEEeecCCCh-hHHH-HHHHHc-CCEEEE
Q 009871          450 DQQPAFILCHIFRQVDE-PSML-SAATQC-GFRLVD  482 (523)
Q Consensus       450 ~~~g~~~l~~~~r~~~~-~~~~-~~~~~~-gf~~~~  482 (523)
                      +|||.++.+...-...+ +... ..++++ +|.+..
T Consensus       368 kpgG~lvystcs~~~~Ene~~v~~~l~~~~~~~~~~  403 (445)
T PRK14904        368 KPGGVLVYATCSIEPEENELQIEAFLQRHPEFSAEP  403 (445)
T ss_pred             CCCcEEEEEeCCCChhhHHHHHHHHHHhCCCCEEec
Confidence            67999988765533222 2333 334444 566543

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=98.73  E-value=1.8e-07  Score=97.33  Aligned_cols=142  Identities=18%  Similarity=0.088  Sum_probs=89.8

Q ss_pred             hhHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcC-CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeee
Q 009871          318 ESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLE  396 (523)
Q Consensus       318 ~~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ld  396 (523)
                      .++..++.++.    ..+|.+|||+|||+|+.+..++... ..+|+++|+++.+++.+++|++.++..   ..+.....|
T Consensus       225 ~~s~~~~~~L~----~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~---~~v~~~~~d  297 (426)
T TIGR00563       225 ASAQWVATWLA----PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLT---IKAETKDGD  297 (426)
T ss_pred             HHHHHHHHHhC----CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCC---eEEEEeccc
Confidence            35556666663    3467899999999999998888763 468999999999999999999997764   122223222


Q ss_pred             cCCCCcchhhhhhcCCCccEEEEc------cccCCCCC----------------hHHHHHHHHHHhhccCCCCCCCCCcE
Q 009871          397 WGNRDHIEAIKEENNEGFEVILGT------DVSYIPEA----------------ILPLFATAKELTASSNKSLREDQQPA  454 (523)
Q Consensus       397 w~~~~~~~~~~~~~~~~fD~Ii~~------d~~y~~~~----------------~~~l~~~l~~ll~~~~~~~~~~~~g~  454 (523)
                      ......     .....+||.|+..      .++.....                ...++..+.++|         +|||.
T Consensus       298 ~~~~~~-----~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~L---------kpgG~  363 (426)
T TIGR00563       298 GRGPSQ-----WAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLL---------KTGGT  363 (426)
T ss_pred             cccccc-----cccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhc---------CCCcE
Confidence            211100     0124579999952      12221111                356788888888         67999


Q ss_pred             EEEEEeecC--CChhHHHHHHHHc-CCEE
Q 009871          455 FILCHIFRQ--VDEPSMLSAATQC-GFRL  480 (523)
Q Consensus       455 ~~l~~~~r~--~~~~~~~~~~~~~-gf~~  480 (523)
                      ++.+...=.  ..+..+...++++ +|.+
T Consensus       364 lvystcs~~~~Ene~~v~~~l~~~~~~~~  392 (426)
T TIGR00563       364 LVYATCSVLPEENSEQIKAFLQEHPDFPF  392 (426)
T ss_pred             EEEEeCCCChhhCHHHHHHHHHhCCCCee
Confidence            987655432  2233333444454 4654

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>PHA03412 putative methyltransferase; Provisional

Probab=98.73  E-value=7.5e-08  Score=89.54  Aligned_cols=89  Identities=13%  Similarity=0.085  Sum_probs=62.6

Q ss_pred             CCCeEEEECCCccHHHHHHHhc----CCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhc
Q 009871          335 AGKKVLELGCGCGGICSMVAAG----SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEEN  410 (523)
Q Consensus       335 ~~~~VLElG~G~G~l~~~~a~~----~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~  410 (523)
                      .+.+|||+|||+|.++..++..    ...+|+++|+++.+++.|++|+..         +.+...|....       .+ 
T Consensus        49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~---------~~~~~~D~~~~-------~~-  111 (241)
T PHA03412         49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPE---------ATWINADALTT-------EF-  111 (241)
T ss_pred             CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccC---------CEEEEcchhcc-------cc-
Confidence            4679999999999888887764    235899999999999999988532         22332222211       11 


Q ss_pred             CCCccEEEEccccCCC------------CChHHHHHHHHHHh
Q 009871          411 NEGFEVILGTDVSYIP------------EAILPLFATAKELT  440 (523)
Q Consensus       411 ~~~fD~Ii~~d~~y~~------------~~~~~l~~~l~~ll  440 (523)
                      ..+||+||++...+..            ..+..++..+.+++
T Consensus       112 ~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll  153 (241)
T PHA03412        112 DTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIA  153 (241)
T ss_pred             cCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHc
Confidence            3589999999776631            12556888888866

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=98.73  E-value=3.8e-07  Score=92.53  Aligned_cols=143  Identities=14%  Similarity=0.057  Sum_probs=88.5

Q ss_pred             hhHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeec
Q 009871          318 ESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEW  397 (523)
Q Consensus       318 ~~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw  397 (523)
                      ..+..|.+++...... .+.+||||+||+|.++..++.. +.+|+++|.++.+++.+++|+..|++.    ++.+...|.
T Consensus       190 ~~~e~l~~~v~~~~~~-~~~~vLDl~~G~G~~sl~la~~-~~~v~~vE~~~~ai~~a~~N~~~~~~~----~v~~~~~d~  263 (362)
T PRK05031        190 AVNEKMLEWALDATKG-SKGDLLELYCGNGNFTLALARN-FRRVLATEISKPSVAAAQYNIAANGID----NVQIIRMSA  263 (362)
T ss_pred             HHHHHHHHHHHHHhhc-CCCeEEEEeccccHHHHHHHhh-CCEEEEEECCHHHHHHHHHHHHHhCCC----cEEEEECCH
Confidence            3445555555543321 2357999999999888855554 679999999999999999999999874    466665554


Q ss_pred             CCCCcchhhhhh-----------cCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCCh
Q 009871          398 GNRDHIEAIKEE-----------NNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDE  466 (523)
Q Consensus       398 ~~~~~~~~~~~~-----------~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~  466 (523)
                      .+.  +..+...           ...+||+|+. |.-+ ....+.+++.+   .         ++++.+|++..+.... 
T Consensus       264 ~~~--l~~~~~~~~~~~~~~~~~~~~~~D~v~l-DPPR-~G~~~~~l~~l---~---------~~~~ivyvSC~p~tla-  326 (362)
T PRK05031        264 EEF--TQAMNGVREFNRLKGIDLKSYNFSTIFV-DPPR-AGLDDETLKLV---Q---------AYERILYISCNPETLC-  326 (362)
T ss_pred             HHH--HHHHhhcccccccccccccCCCCCEEEE-CCCC-CCCcHHHHHHH---H---------ccCCEEEEEeCHHHHH-
Confidence            321  1111000           0125899998 5555 34445555444   3         2367888876552211 


Q ss_pred             hHHHHHHHHcCCEEEEEcC
Q 009871          467 PSMLSAATQCGFRLVDKWP  485 (523)
Q Consensus       467 ~~~~~~~~~~gf~~~~~~~  485 (523)
                      .++.. +.+ ||++.++..
T Consensus       327 rDl~~-L~~-gY~l~~v~~  343 (362)
T PRK05031        327 ENLET-LSQ-THKVERFAL  343 (362)
T ss_pred             HHHHH-HcC-CcEEEEEEE
Confidence            12222 323 899988855

>TIGR00438 rrmJ cell division protein FtsJ

Probab=98.73  E-value=3.5e-08  Score=90.80  Aligned_cols=70  Identities=17%  Similarity=0.231  Sum_probs=53.4

Q ss_pred             CCCCCeEEEECCCccccHHHHHhhC-CCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCcc----CCCCCCCce
Q 009871           73 GAGRKDVLEVGCGAGNTIFPLIAAY-PDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDL----SRQISPSSI  147 (523)
Q Consensus        73 ~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~----~~~~~~~~f  147 (523)
                      ..++.+|||+|||+|.++..+++++ +..+|+|+|+|+.+     .     ..++.++++|+.+.+.    ...+++++|
T Consensus        30 i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----~-----~~~i~~~~~d~~~~~~~~~l~~~~~~~~~   99 (188)
T TIGR00438        30 IKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----P-----IENVDFIRGDFTDEEVLNKIRERVGDDKV   99 (188)
T ss_pred             cCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----c-----CCCceEEEeeCCChhHHHHHHHHhCCCCc
Confidence            3578899999999999999998885 56789999999965     1     1457889999875421    001356789


Q ss_pred             eEEEE
Q 009871          148 DIVTM  152 (523)
Q Consensus       148 D~V~~  152 (523)
                      |+|++
T Consensus       100 D~V~~  104 (188)
T TIGR00438       100 DVVMS  104 (188)
T ss_pred             cEEEc
Confidence            99998

>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=98.72  E-value=1.1e-07  Score=83.00  Aligned_cols=117  Identities=17%  Similarity=0.340  Sum_probs=84.6

Q ss_pred             CCCCeEEEECCCccccHHHHHhh-CCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAA-YPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM  152 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~-~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~  152 (523)
                      .....+||||||+|..+..|++. .|++.+.++|++|.+++..++.+..+..+++.++.|+..-     +..++.|+++.
T Consensus        42 ~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~-----l~~~~VDvLvf  116 (209)
T KOG3191|consen   42 HNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSG-----LRNESVDVLVF  116 (209)
T ss_pred             cCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhh-----hccCCccEEEE
Confidence            34778999999999999999988 7889999999999999998887766667788899988753     45589999988


Q ss_pred             ------------------cccc--ccceeeec------ceEEecCCeEEEee----CHHHHHHHHHhCCCcEE
Q 009871          153 ------------------ERLT--GKDQKISE------NFYVRGDGTRAFYF----SNDFLTSLFKENGFDVE  195 (523)
Q Consensus       153 ------------------~~~~--~~~~~~~~------~~~~~~~g~~~~~~----~~~~l~~ll~~~Gf~~~  195 (523)
                                        ..+.  ..+..+.+      ...+.++|.+....    .++++.+.++..||...
T Consensus       117 NPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p~ei~k~l~~~g~~~~  189 (209)
T KOG3191|consen  117 NPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANKPKEILKILEKKGYGVR  189 (209)
T ss_pred             CCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcCHHHHHHHHhhccccee
Confidence                              0010  01111111      11456677665432    57888889999988753

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=98.71  E-value=5.5e-08  Score=91.39  Aligned_cols=78  Identities=15%  Similarity=0.023  Sum_probs=60.9

Q ss_pred             hhhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC-CCcEEEEEeeccCCccCCCCCCCce
Q 009871           69 RYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT-ETRVSTFVCDLISDDLSRQISPSSI  147 (523)
Q Consensus        69 ~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~-~~~v~~~~~d~~~~~~~~~~~~~~f  147 (523)
                      +.+...++.+|||+|||+|..+..+++..  .+|+++|+++.|++.|+++.... ..++++.++|..+.    ..+.++|
T Consensus        72 ~~l~~~~~~~VLeiG~GsG~~t~~la~~~--~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~----~~~~~~f  145 (212)
T PRK00312         72 ELLELKPGDRVLEIGTGSGYQAAVLAHLV--RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKG----WPAYAPF  145 (212)
T ss_pred             HhcCCCCCCEEEEECCCccHHHHHHHHHh--CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccC----CCcCCCc
Confidence            34555678899999999999998887774  36999999999999999876432 34689999998643    1224789


Q ss_pred             eEEEE
Q 009871          148 DIVTM  152 (523)
Q Consensus       148 D~V~~  152 (523)
                      |+|++
T Consensus       146 D~I~~  150 (212)
T PRK00312        146 DRILV  150 (212)
T ss_pred             CEEEE
Confidence            99987

>PRK00811 spermidine synthase; Provisional

Probab=98.70  E-value=3.4e-07  Score=89.65  Aligned_cols=135  Identities=15%  Similarity=0.136  Sum_probs=85.0

Q ss_pred             CCCeEEEECCCccHHHHHHHhc-CCCEEEEEcCChHHHHHHHHHHHhcCCC-CCCCceEEEeeecCCCCcchhhhhhcCC
Q 009871          335 AGKKVLELGCGCGGICSMVAAG-SADLVVATDGDSIALDLLAQNVTANLKP-PFLAKLITKRLEWGNRDHIEAIKEENNE  412 (523)
Q Consensus       335 ~~~~VLElG~G~G~l~~~~a~~-~~~~V~~~D~~~~~l~~~~~n~~~n~~~-~~~~~v~~~~ldw~~~~~~~~~~~~~~~  412 (523)
                      ..++||+||||+|.++..+++. +..+|+++|+|+.+++.+++++...... ....++++...|-..     -+ ....+
T Consensus        76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~-----~l-~~~~~  149 (283)
T PRK00811         76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIK-----FV-AETEN  149 (283)
T ss_pred             CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHH-----HH-hhCCC
Confidence            4579999999999888888876 5679999999999999999987642211 123456655433221     11 11356


Q ss_pred             CccEEEEcccc--CCCC---ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCCh---hHHHHHHHHcCCEEEEEc
Q 009871          413 GFEVILGTDVS--YIPE---AILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDE---PSMLSAATQCGFRLVDKW  484 (523)
Q Consensus       413 ~fD~Ii~~d~~--y~~~---~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~---~~~~~~~~~~gf~~~~~~  484 (523)
                      +||+|++. +.  +.+.   ....+++.+++.|         +|+|.+++-........   ..+.+.+++. |.....+
T Consensus       150 ~yDvIi~D-~~dp~~~~~~l~t~ef~~~~~~~L---------~~gGvlv~~~~~~~~~~~~~~~i~~tl~~~-F~~v~~~  218 (283)
T PRK00811        150 SFDVIIVD-STDPVGPAEGLFTKEFYENCKRAL---------KEDGIFVAQSGSPFYQADEIKDMHRKLKEV-FPIVRPY  218 (283)
T ss_pred             cccEEEEC-CCCCCCchhhhhHHHHHHHHHHhc---------CCCcEEEEeCCCcccCHHHHHHHHHHHHHH-CCCEEEE
Confidence            89999973 21  1111   1267788999999         67998877433222222   2344555555 5544544


Q ss_pred             CC
Q 009871          485 PS  486 (523)
Q Consensus       485 ~~  486 (523)
                      ..
T Consensus       219 ~~  220 (283)
T PRK00811        219 QA  220 (283)
T ss_pred             Ee
Confidence            43

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=98.70  E-value=1.7e-07  Score=84.65  Aligned_cols=86  Identities=21%  Similarity=0.192  Sum_probs=61.5

Q ss_pred             HHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchh
Q 009871          326 VLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEA  405 (523)
Q Consensus       326 ~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~  405 (523)
                      .+.+.....++.+|||+|||+|.++..++++ +.+|+++|+++.+++.+++|+..+      .++.+...|..+..    
T Consensus         4 ~i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~-~~~v~~vE~~~~~~~~~~~~~~~~------~~v~ii~~D~~~~~----   72 (169)
T smart00650        4 KIVRAANLRPGDTVLEIGPGKGALTEELLER-AARVTAIEIDPRLAPRLREKFAAA------DNLTVIHGDALKFD----   72 (169)
T ss_pred             HHHHhcCCCCcCEEEEECCCccHHHHHHHhc-CCeEEEEECCHHHHHHHHHHhccC------CCEEEEECchhcCC----
Confidence            3334344557789999999999999998888 568999999999999999987531      34555555544321    


Q ss_pred             hhhhcCCCccEEEEccccCCC
Q 009871          406 IKEENNEGFEVILGTDVSYIP  426 (523)
Q Consensus       406 ~~~~~~~~fD~Ii~~d~~y~~  426 (523)
                         +....||+|+++ +.|+.
T Consensus        73 ---~~~~~~d~vi~n-~Py~~   89 (169)
T smart00650       73 ---LPKLQPYKVVGN-LPYNI   89 (169)
T ss_pred             ---ccccCCCEEEEC-CCccc
Confidence               223369999985 55653

>PRK04457 spermidine synthase; Provisional

Probab=98.69  E-value=5.2e-08  Score=94.22  Aligned_cols=76  Identities=17%  Similarity=0.331  Sum_probs=62.8

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC--CCcEEEEEeeccCCccCCCCCCCceeEEE
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISDDLSRQISPSSIDIVT  151 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~~~~~~~~~~fD~V~  151 (523)
                      +++.+|||||||+|.++..+++..|+.+|++||+++.+++.|+++....  ..+++++.+|+.+. +.  -.+++||+|+
T Consensus        65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~-l~--~~~~~yD~I~  141 (262)
T PRK04457         65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEY-IA--VHRHSTDVIL  141 (262)
T ss_pred             CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHH-HH--hCCCCCCEEE
Confidence            4677899999999999999999999999999999999999999976432  36899999998642 11  1235899999


Q ss_pred             E
Q 009871          152 M  152 (523)
Q Consensus       152 ~  152 (523)
                      +
T Consensus       142 ~  142 (262)
T PRK04457        142 V  142 (262)
T ss_pred             E
Confidence            8

>PRK01581 speE spermidine synthase; Validated

Probab=98.69  E-value=6e-07  Score=88.89  Aligned_cols=147  Identities=16%  Similarity=0.064  Sum_probs=91.5

Q ss_pred             CCCeEEEECCCccHHHHHHHhcC-CCEEEEEcCChHHHHHHHHHHH---hcCCCCCCCceEEEeeecCCCCcchhhhhhc
Q 009871          335 AGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVT---ANLKPPFLAKLITKRLEWGNRDHIEAIKEEN  410 (523)
Q Consensus       335 ~~~~VLElG~G~G~l~~~~a~~~-~~~V~~~D~~~~~l~~~~~n~~---~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~  410 (523)
                      ..++||+||||+|+....+++.. ..+|+++|+|+++++.|+....   .|.......++++...|-.+     -+ ...
T Consensus       150 ~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~-----fL-~~~  223 (374)
T PRK01581        150 DPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKE-----FL-SSP  223 (374)
T ss_pred             CCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHH-----HH-Hhc
Confidence            45699999999997766666653 4699999999999999996311   12211123566655433221     11 113


Q ss_pred             CCCccEEEEccccCCCC-------ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCCh---hHHHHHHHHcCCEE
Q 009871          411 NEGFEVILGTDVSYIPE-------AILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDE---PSMLSAATQCGFRL  480 (523)
Q Consensus       411 ~~~fD~Ii~~d~~y~~~-------~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~---~~~~~~~~~~gf~~  480 (523)
                      .++||+|+.. +. ++.       .-..+++.+++.|         +|+|++++.........   ..+...+++.|+.+
T Consensus       224 ~~~YDVIIvD-l~-DP~~~~~~~LyT~EFy~~~~~~L---------kPgGV~V~Qs~sp~~~~~~~~~i~~tL~~af~~v  292 (374)
T PRK01581        224 SSLYDVIIID-FP-DPATELLSTLYTSELFARIATFL---------TEDGAFVCQSNSPADAPLVYWSIGNTIEHAGLTV  292 (374)
T ss_pred             CCCccEEEEc-CC-CccccchhhhhHHHHHHHHHHhc---------CCCcEEEEecCChhhhHHHHHHHHHHHHHhCCce
Confidence            4689999974 32 211       1256888999999         77999876543211111   23566778899988


Q ss_pred             EEEcCCCCCCCCcchhhc
Q 009871          481 VDKWPSKNSASPSESIIS  498 (523)
Q Consensus       481 ~~~~~~~~~~~~~~~~~~  498 (523)
                      .......+..+..++|..
T Consensus       293 ~~y~t~vPsyg~~WgF~~  310 (374)
T PRK01581        293 KSYHTIVPSFGTDWGFHI  310 (374)
T ss_pred             EEEEEecCCCCCceEEEE
Confidence            776554444444444444

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=98.69  E-value=2.6e-07  Score=86.39  Aligned_cols=122  Identities=19%  Similarity=0.199  Sum_probs=91.6

Q ss_pred             CCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCc
Q 009871          335 AGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGF  414 (523)
Q Consensus       335 ~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~f  414 (523)
                      ...++||||+|.|.++..++... .+|++|+.|+.|...+++    .+..      -....+|.+.          +.+|
T Consensus        94 ~~~~lLDlGAGdG~VT~~l~~~f-~~v~aTE~S~~Mr~rL~~----kg~~------vl~~~~w~~~----------~~~f  152 (265)
T PF05219_consen   94 KDKSLLDLGAGDGEVTERLAPLF-KEVYATEASPPMRWRLSK----KGFT------VLDIDDWQQT----------DFKF  152 (265)
T ss_pred             cCCceEEecCCCcHHHHHHHhhc-ceEEeecCCHHHHHHHHh----CCCe------EEehhhhhcc----------CCce
Confidence            56789999999999888887654 579999999988766543    2221      2234456543          3589


Q ss_pred             cEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee-------------cCCC-------------hhH
Q 009871          415 EVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIF-------------RQVD-------------EPS  468 (523)
Q Consensus       415 D~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~-------------r~~~-------------~~~  468 (523)
                      |+|.|-.++-.......|++.+++.|         +|+|.++++-..             +++.             ...
T Consensus       153 DvIscLNvLDRc~~P~~LL~~i~~~l---------~p~G~lilAvVlP~~pyVE~~~g~~~~P~e~l~~~g~~~E~~v~~  223 (265)
T PF05219_consen  153 DVISCLNVLDRCDRPLTLLRDIRRAL---------KPNGRLILAVVLPFRPYVEFGGGKSNRPSELLPVKGATFEEQVSS  223 (265)
T ss_pred             EEEeehhhhhccCCHHHHHHHHHHHh---------CCCCEEEEEEEecccccEEcCCCCCCCchhhcCCCCCcHHHHHHH
Confidence            99999999999999999999999999         679999876443             1111             134


Q ss_pred             HHHHHHHcCCEEEEEcCC
Q 009871          469 MLSAATQCGFRLVDKWPS  486 (523)
Q Consensus       469 ~~~~~~~~gf~~~~~~~~  486 (523)
                      +++.++..||+++...+.
T Consensus       224 l~~v~~p~GF~v~~~tr~  241 (265)
T PF05219_consen  224 LVNVFEPAGFEVERWTRL  241 (265)
T ss_pred             HHHHHHhcCCEEEEEecc
Confidence            567788899999998874

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=98.68  E-value=6.9e-08  Score=95.52  Aligned_cols=80  Identities=14%  Similarity=0.118  Sum_probs=62.9

Q ss_pred             hhhcCCCCCeEEEECCCccccHHHHHhhCC-CCEEEEEeCCHHHHHHHHhcccc-CCCcEEEEEeeccCCccCCCCCCCc
Q 009871           69 RYFSGAGRKDVLEVGCGAGNTIFPLIAAYP-DVFVYACDFSPRAVNLVMTHKDF-TETRVSTFVCDLISDDLSRQISPSS  146 (523)
Q Consensus        69 ~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~-~~~v~gvD~S~~~l~~a~~~~~~-~~~~v~~~~~d~~~~~~~~~~~~~~  146 (523)
                      +.+...++.+|||||||+|..+..+++..+ ...|+|+|+++.|++.|+++... ...++.++++|+...    +...+.
T Consensus        74 ~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~----~~~~~~  149 (322)
T PRK13943         74 EWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYG----VPEFAP  149 (322)
T ss_pred             HhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhc----ccccCC
Confidence            344446778999999999999999998754 35799999999999999987643 235689999998654    223467


Q ss_pred             eeEEEE
Q 009871          147 IDIVTM  152 (523)
Q Consensus       147 fD~V~~  152 (523)
                      ||+|++
T Consensus       150 fD~Ii~  155 (322)
T PRK13943        150 YDVIFV  155 (322)
T ss_pred             ccEEEE
Confidence            999987

>PHA03412 putative methyltransferase; Provisional

Probab=98.68  E-value=4.2e-08  Score=91.21  Aligned_cols=69  Identities=10%  Similarity=0.162  Sum_probs=57.9

Q ss_pred             CCCeEEEECCCccccHHHHHhhC---CCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEE
Q 009871           75 GRKDVLEVGCGAGNTIFPLIAAY---PDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVT  151 (523)
Q Consensus        75 ~~~~iLDiGcG~G~~~~~l~~~~---~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~  151 (523)
                      .+.+|||+|||+|.++..++++.   +...|+|+|+++.|++.|+++.    .++.++++|+...    ++ +++||+|+
T Consensus        49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~----~~~~~~~~D~~~~----~~-~~~FDlII  119 (241)
T PHA03412         49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV----PEATWINADALTT----EF-DTLFDMAI  119 (241)
T ss_pred             CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc----cCCEEEEcchhcc----cc-cCCccEEE
Confidence            46799999999999999988763   3568999999999999999875    3578999999754    22 46899999


Q ss_pred             E
Q 009871          152 M  152 (523)
Q Consensus       152 ~  152 (523)
                      +
T Consensus       120 s  120 (241)
T PHA03412        120 S  120 (241)
T ss_pred             E
Confidence            9

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=98.66  E-value=7.2e-08  Score=93.97  Aligned_cols=76  Identities=18%  Similarity=0.142  Sum_probs=59.7

Q ss_pred             hhhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCcee
Q 009871           69 RYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSID  148 (523)
Q Consensus        69 ~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD  148 (523)
                      +.+...++.+|||||||+|.++..++++++  +|+|+|+++.|++.++++...  .+++++++|+.+.+    +++-.+|
T Consensus        36 ~~l~~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~avE~d~~~~~~~~~~~~~--~~v~~i~~D~~~~~----~~~~~~~  107 (272)
T PRK00274         36 DAAGPQPGDNVLEIGPGLGALTEPLLERAA--KVTAVEIDRDLAPILAETFAE--DNLTIIEGDALKVD----LSELQPL  107 (272)
T ss_pred             HhcCCCCcCeEEEeCCCccHHHHHHHHhCC--cEEEEECCHHHHHHHHHhhcc--CceEEEEChhhcCC----HHHcCcc
Confidence            344446778999999999999999999964  699999999999999886532  67999999998763    2221146


Q ss_pred             EEEE
Q 009871          149 IVTM  152 (523)
Q Consensus       149 ~V~~  152 (523)
                      .|++
T Consensus       108 ~vv~  111 (272)
T PRK00274        108 KVVA  111 (272)
T ss_pred             eEEE
Confidence            6655

>TIGR03438 probable methyltransferase

Probab=98.66  E-value=1.5e-07  Score=93.10  Aligned_cols=113  Identities=14%  Similarity=0.115  Sum_probs=73.7

Q ss_pred             CCCeEEEECCCccHHHHHHHhcC--CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCC
Q 009871          335 AGKKVLELGCGCGGICSMVAAGS--ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNE  412 (523)
Q Consensus       335 ~~~~VLElG~G~G~l~~~~a~~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~  412 (523)
                      ++.+|||||||+|..+..++...  ..+|+++|+|++||+.+++++......   .++.....|..+.....  ......
T Consensus        63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~---~~v~~i~gD~~~~~~~~--~~~~~~  137 (301)
T TIGR03438        63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQ---LEVHGICADFTQPLALP--PEPAAG  137 (301)
T ss_pred             CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCC---ceEEEEEEcccchhhhh--cccccC
Confidence            56799999999998888888775  468999999999999999987753311   23443344443221110  001011


Q ss_pred             CccEEEEccccCC--CCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee
Q 009871          413 GFEVILGTDVSYI--PEAILPLFATAKELTASSNKSLREDQQPAFILCHIF  461 (523)
Q Consensus       413 ~fD~Ii~~d~~y~--~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~  461 (523)
                      ...+++....+++  ++....+++.+.+.|         +|||.+++....
T Consensus       138 ~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L---------~pgG~~lig~d~  179 (301)
T TIGR03438       138 RRLGFFPGSTIGNFTPEEAVAFLRRIRQLL---------GPGGGLLIGVDL  179 (301)
T ss_pred             CeEEEEecccccCCCHHHHHHHHHHHHHhc---------CCCCEEEEeccC
Confidence            2233444445555  445677899999999         779999886544

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=98.66  E-value=1e-07  Score=92.13  Aligned_cols=88  Identities=22%  Similarity=0.292  Sum_probs=66.4

Q ss_pred             ccccchhhhHHHHhhhhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeecc
Q 009871           55 RFFKDRHYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLI  134 (523)
Q Consensus        55 ~f~~~~~~l~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~  134 (523)
                      +|..+...+. .+-+.+...++.+|||||||+|.++..++++  +.+|+|+|+++.|++.++++... ..+++++++|+.
T Consensus        10 nfl~d~~~~~-~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~--~~~v~~vEid~~~~~~l~~~~~~-~~~v~ii~~D~~   85 (258)
T PRK14896         10 HFLIDDRVVD-RIVEYAEDTDGDPVLEIGPGKGALTDELAKR--AKKVYAIELDPRLAEFLRDDEIA-AGNVEIIEGDAL   85 (258)
T ss_pred             cccCCHHHHH-HHHHhcCCCCcCeEEEEeCccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHhcc-CCCEEEEEeccc
Confidence            3444444443 3333344456789999999999999999998  45799999999999999987643 367999999998


Q ss_pred             CCccCCCCCCCceeEEEE
Q 009871          135 SDDLSRQISPSSIDIVTM  152 (523)
Q Consensus       135 ~~~~~~~~~~~~fD~V~~  152 (523)
                      +.    +++  .||.|++
T Consensus        86 ~~----~~~--~~d~Vv~   97 (258)
T PRK14896         86 KV----DLP--EFNKVVS   97 (258)
T ss_pred             cC----Cch--hceEEEE
Confidence            76    332  4798877

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=98.66  E-value=2.8e-07  Score=85.21  Aligned_cols=108  Identities=10%  Similarity=0.073  Sum_probs=83.1

Q ss_pred             CCCeEEEECCCccHHHHHHHhcC--CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEe-eecCCCCcchhhhhhcC
Q 009871          335 AGKKVLELGCGCGGICSMVAAGS--ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKR-LEWGNRDHIEAIKEENN  411 (523)
Q Consensus       335 ~~~~VLElG~G~G~l~~~~a~~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~-ldw~~~~~~~~~~~~~~  411 (523)
                      ..++|||||++.|.-++.+|...  ..++|.+|.+++..+.|++|++..++.   .++.+.. +|+.     +.+.....
T Consensus        59 ~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~---~~i~~~~~gdal-----~~l~~~~~  130 (219)
T COG4122          59 GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVD---DRIELLLGGDAL-----DVLSRLLD  130 (219)
T ss_pred             CCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCc---ceEEEEecCcHH-----HHHHhccC
Confidence            67899999999995555555543  358999999999999999999999886   4455544 3333     23333346


Q ss_pred             CCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec
Q 009871          412 EGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFR  462 (523)
Q Consensus       412 ~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r  462 (523)
                      ++||+|+.-   ......+..+..+.++|         +|||.+++-...+
T Consensus       131 ~~fDliFID---adK~~yp~~le~~~~lL---------r~GGliv~DNvl~  169 (219)
T COG4122         131 GSFDLVFID---ADKADYPEYLERALPLL---------RPGGLIVADNVLF  169 (219)
T ss_pred             CCccEEEEe---CChhhCHHHHHHHHHHh---------CCCcEEEEeeccc
Confidence            899999986   67888999999999999         6799888755544

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=98.66  E-value=3.4e-07  Score=85.88  Aligned_cols=145  Identities=11%  Similarity=0.027  Sum_probs=89.2

Q ss_pred             HHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCC-----------CCC
Q 009871          320 AHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPP-----------FLA  388 (523)
Q Consensus       320 a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~-----------~~~  388 (523)
                      ...|.+++... ...++.+|||+|||.|.-+..+|.+|. .|+++|+|+.+++.+..   .+++..           ...
T Consensus        23 ~~~L~~~~~~~-~~~~~~rvL~~gCG~G~da~~LA~~G~-~V~avD~s~~Ai~~~~~---~~~l~~~~~~~~~~~~~~~~   97 (218)
T PRK13255         23 NPLLQKYWPAL-ALPAGSRVLVPLCGKSLDMLWLAEQGH-EVLGVELSELAVEQFFA---ENGLTPQTRQSGEFEHYQAG   97 (218)
T ss_pred             CHHHHHHHHhh-CCCCCCeEEEeCCCChHhHHHHHhCCC-eEEEEccCHHHHHHHHH---HcCCCccccccccccccccC
Confidence            34566666532 123567999999999988888888865 69999999999997642   232211           113


Q ss_pred             ceEEEeeecCCCCcchhhhhhcCCCccEEEEccccCC--CCChHHHHHHHHHHhhccCCCCCCCCCcEEE-EEEee--c-
Q 009871          389 KLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYI--PEAILPLFATAKELTASSNKSLREDQQPAFI-LCHIF--R-  462 (523)
Q Consensus       389 ~v~~~~ldw~~~~~~~~~~~~~~~~fD~Ii~~d~~y~--~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~-l~~~~--r-  462 (523)
                      +|++...|..+..      ......||+|+-.-++.+  ++.....++.+.++|         +|||.++ +++..  . 
T Consensus        98 ~v~~~~~D~~~l~------~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL---------~pgG~~~l~~~~~~~~~  162 (218)
T PRK13255         98 EITIYCGDFFALT------AADLADVDAVYDRAALIALPEEMRERYVQQLAALL---------PAGCRGLLVTLDYPQEE  162 (218)
T ss_pred             ceEEEECcccCCC------cccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHc---------CCCCeEEEEEEEeCCcc
Confidence            4444443333221      011247999997665443  456788899999999         6788644 33322  1 


Q ss_pred             ------CCChhHHHHHHHHcCCEEEEEcC
Q 009871          463 ------QVDEPSMLSAATQCGFRLVDKWP  485 (523)
Q Consensus       463 ------~~~~~~~~~~~~~~gf~~~~~~~  485 (523)
                            ..+.+++.+.+. -+|++..+..
T Consensus       163 ~~gPp~~~~~~el~~~~~-~~~~i~~~~~  190 (218)
T PRK13255        163 LAGPPFSVSDEEVEALYA-GCFEIELLER  190 (218)
T ss_pred             CCCCCCCCCHHHHHHHhc-CCceEEEeee
Confidence                  123344555443 3377766654

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=98.64  E-value=3e-07  Score=89.79  Aligned_cols=139  Identities=14%  Similarity=0.146  Sum_probs=101.4

Q ss_pred             HHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCC
Q 009871          321 HLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNR  400 (523)
Q Consensus       321 ~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~  400 (523)
                      ..||+.+..-....+|..|||--||||++...+.-.| .+|+++|++..|++-++.|++.-++.    ...+.  ...+.
T Consensus       183 P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G-~~viG~Did~~mv~gak~Nl~~y~i~----~~~~~--~~~Da  255 (347)
T COG1041         183 PRLARAMVNLARVKRGELVLDPFCGTGGILIEAGLMG-ARVIGSDIDERMVRGAKINLEYYGIE----DYPVL--KVLDA  255 (347)
T ss_pred             HHHHHHHHHHhccccCCEeecCcCCccHHHHhhhhcC-ceEeecchHHHHHhhhhhhhhhhCcC----ceeEE--Eeccc
Confidence            3567777666667789999999999998777666665 47999999999999999999987653    22221  11122


Q ss_pred             CcchhhhhhcCCCccEEEEccccCCCC----------ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhHHH
Q 009871          401 DHIEAIKEENNEGFEVILGTDVSYIPE----------AILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSML  470 (523)
Q Consensus       401 ~~~~~~~~~~~~~fD~Ii~~d~~y~~~----------~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~~  470 (523)
                      ..+    ++...++|.|++ |..|...          .+..+++++.+.|         ++||.+.++...      ...
T Consensus       256 ~~l----pl~~~~vdaIat-DPPYGrst~~~~~~l~~Ly~~~le~~~evL---------k~gG~~vf~~p~------~~~  315 (347)
T COG1041         256 TNL----PLRDNSVDAIAT-DPPYGRSTKIKGEGLDELYEEALESASEVL---------KPGGRIVFAAPR------DPR  315 (347)
T ss_pred             ccC----CCCCCccceEEe-cCCCCcccccccccHHHHHHHHHHHHHHHh---------hcCcEEEEecCC------cch
Confidence            221    244457999987 7878743          3778888999999         669988887762      245


Q ss_pred             HHHHHcCCEEEEEcCC
Q 009871          471 SAATQCGFRLVDKWPS  486 (523)
Q Consensus       471 ~~~~~~gf~~~~~~~~  486 (523)
                      +.+.+.||++......
T Consensus       316 ~~~~~~~f~v~~~~~~  331 (347)
T COG1041         316 HELEELGFKVLGRFTM  331 (347)
T ss_pred             hhHhhcCceEEEEEEE
Confidence            6677889999887653

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=98.64  E-value=5.3e-08  Score=89.68  Aligned_cols=120  Identities=21%  Similarity=0.314  Sum_probs=80.1

Q ss_pred             CCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccc-cCCCcEEEEEeeccCCccCCCCCCCceeEEEE-
Q 009871           75 GRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKD-FTETRVSTFVCDLISDDLSRQISPSSIDIVTM-  152 (523)
Q Consensus        75 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~-~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~-  152 (523)
                      ....+||||||.|.++..+|+.+|+..++|||++...+..|.++.. ....|+.++++|+... +..-++++++|.|+. 
T Consensus        17 ~~~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~-l~~~~~~~~v~~i~i~   95 (195)
T PF02390_consen   17 DNPLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDAREL-LRRLFPPGSVDRIYIN   95 (195)
T ss_dssp             CCEEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTH-HHHHSTTTSEEEEEEE
T ss_pred             CCCeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHH-HhhcccCCchheEEEe
Confidence            3348999999999999999999999999999999999998887664 3458999999999752 222355789999998 


Q ss_pred             ------------ccccccceeeecceEEecCCeEEEeeCH----HHHHHHHHh--CCCcEE
Q 009871          153 ------------ERLTGKDQKISENFYVRGDGTRAFYFSN----DFLTSLFKE--NGFDVE  195 (523)
Q Consensus       153 ------------~~~~~~~~~~~~~~~~~~~g~~~~~~~~----~~l~~ll~~--~Gf~~~  195 (523)
                                  .|+..+.---.-...++++|.+.+....    +++.+.+.+  .+|+..
T Consensus        96 FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~y~~~~~~~~~~~~~~f~~~  156 (195)
T PF02390_consen   96 FPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVEEYAEWMLEQFEESHPGFENI  156 (195)
T ss_dssp             S-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-HHHHHHHHHHHHHHSTTEEEE
T ss_pred             CCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhcCcCeEEc
Confidence                        2221111000001246777776654433    345666666  356643

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=98.64  E-value=5.5e-08  Score=96.99  Aligned_cols=74  Identities=14%  Similarity=0.099  Sum_probs=60.2

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCC-CcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQISPSSIDIVTM  152 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~V~~  152 (523)
                      .++.+|||+|||+|.++..+++.  +.+|+|+|+|+.|++.|+++....+ .+++|+++|+.+..   ....++||+|++
T Consensus       172 ~~~~~VLDl~cG~G~~sl~la~~--~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~---~~~~~~~D~Vv~  246 (315)
T PRK03522        172 LPPRSMWDLFCGVGGFGLHCATP--GMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFA---TAQGEVPDLVLV  246 (315)
T ss_pred             cCCCEEEEccCCCCHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHH---HhcCCCCeEEEE
Confidence            35689999999999999999986  4679999999999999999875433 57999999997542   112357999988

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=98.64  E-value=5.8e-08  Score=88.89  Aligned_cols=122  Identities=13%  Similarity=0.082  Sum_probs=75.2

Q ss_pred             CeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCccE
Q 009871          337 KKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEV  416 (523)
Q Consensus       337 ~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~fD~  416 (523)
                      +.++|+|||+| .+...++....+|++||+++.||+.|++--...-     .+...   ...++ +...+.. .+.+.|+
T Consensus        35 ~~a~DvG~G~G-qa~~~iae~~k~VIatD~s~~mL~~a~k~~~~~y-----~~t~~---~ms~~-~~v~L~g-~e~SVDl  103 (261)
T KOG3010|consen   35 RLAWDVGTGNG-QAARGIAEHYKEVIATDVSEAMLKVAKKHPPVTY-----CHTPS---TMSSD-EMVDLLG-GEESVDL  103 (261)
T ss_pred             ceEEEeccCCC-cchHHHHHhhhhheeecCCHHHHHHhhcCCCccc-----ccCCc---ccccc-ccccccC-CCcceee
Confidence            38999999999 6655555557899999999999998865211110     11100   01111 1111111 1579999


Q ss_pred             EEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEE-EEEeecCCChhHHHHHHHHcCC
Q 009871          417 ILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFI-LCHIFRQVDEPSMLSAATQCGF  478 (523)
Q Consensus       417 Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~-l~~~~r~~~~~~~~~~~~~~gf  478 (523)
                      |+++.++++.. ++.+.+.+.++|+        ++||.+. -++.......+++...+.+.+.
T Consensus       104 I~~Aqa~HWFd-le~fy~~~~rvLR--------k~Gg~iavW~Y~dd~v~~pE~dsv~~r~~~  157 (261)
T KOG3010|consen  104 ITAAQAVHWFD-LERFYKEAYRVLR--------KDGGLIAVWNYNDDFVDWPEFDSVMLRLYD  157 (261)
T ss_pred             ehhhhhHHhhc-hHHHHHHHHHHcC--------CCCCEEEEEEccCCCcCCHHHHHHHHHHhh
Confidence            99999999886 8899999999993        2354443 3333223344555555544433

>PRK01581 speE spermidine synthase; Validated

Probab=98.63  E-value=1.2e-07  Score=93.80  Aligned_cols=124  Identities=19%  Similarity=0.214  Sum_probs=83.1

Q ss_pred             hcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhcc--------ccCCCcEEEEEeeccCCccCCCC
Q 009871           71 FSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHK--------DFTETRVSTFVCDLISDDLSRQI  142 (523)
Q Consensus        71 ~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~--------~~~~~~v~~~~~d~~~~~~~~~~  142 (523)
                      .....+.+||+||||+|..+..+++..+..+|++||++++|++.|++..        ....++++++.+|+.+. +  ..
T Consensus       146 ~~h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~f-L--~~  222 (374)
T PRK01581        146 SKVIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEF-L--SS  222 (374)
T ss_pred             HhCCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHH-H--Hh
Confidence            3346778999999999999988888765578999999999999999731        12357899999999752 1  12


Q ss_pred             CCCceeEEEEccc---cccceeee------c-ceEEecCCeEEEee-----CH---HHHHHHHHhCCCcEEEE
Q 009871          143 SPSSIDIVTMERL---TGKDQKIS------E-NFYVRGDGTRAFYF-----SN---DFLTSLFKENGFDVEEL  197 (523)
Q Consensus       143 ~~~~fD~V~~~~~---~~~~~~~~------~-~~~~~~~g~~~~~~-----~~---~~l~~ll~~~Gf~~~~~  197 (523)
                      .+++||+|++.-.   ......+.      . .-.++++|.++..-     ..   ..+.+.++++||.+...
T Consensus       223 ~~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~~~~~~~~~i~~tL~~af~~v~~y  295 (374)
T PRK01581        223 PSSLYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSNSPADAPLVYWSIGNTIEHAGLTVKSY  295 (374)
T ss_pred             cCCCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecCChhhhHHHHHHHHHHHHHhCCceEEE
Confidence            3568999999111   00000000      0 11577888775421     11   23577788898876543

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=98.63  E-value=1.2e-07  Score=99.09  Aligned_cols=76  Identities=16%  Similarity=0.116  Sum_probs=62.0

Q ss_pred             cCCCCCeEEEECCCccccHHHHHhhC-CCCEEEEEeCCHHHHHHHHhccccCC-CcEEEEEeeccCCccCCCCCCCceeE
Q 009871           72 SGAGRKDVLEVGCGAGNTIFPLIAAY-PDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQISPSSIDI  149 (523)
Q Consensus        72 ~~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~v~gvD~S~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~  149 (523)
                      ...++.+|||+|||+|..+..+++.. .+.+|+|+|+|+.|++.++++....+ .+++++++|+...    + ++++||+
T Consensus       247 ~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~----~-~~~~fD~  321 (445)
T PRK14904        247 NPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSF----S-PEEQPDA  321 (445)
T ss_pred             CCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCccccc----c-cCCCCCE
Confidence            33567899999999999999888764 35689999999999999999875433 4689999999765    2 4568999


Q ss_pred             EEE
Q 009871          150 VTM  152 (523)
Q Consensus       150 V~~  152 (523)
                      |++
T Consensus       322 Vl~  324 (445)
T PRK14904        322 ILL  324 (445)
T ss_pred             EEE
Confidence            997

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=98.62  E-value=1.2e-07  Score=98.64  Aligned_cols=82  Identities=9%  Similarity=0.039  Sum_probs=64.3

Q ss_pred             hcCCCCCeEEEECCCccccHHHHHhhC-CCCEEEEEeCCHHHHHHHHhccccCC-CcEEEEEeeccCCccCCCCCCCcee
Q 009871           71 FSGAGRKDVLEVGCGAGNTIFPLIAAY-PDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQISPSSID  148 (523)
Q Consensus        71 ~~~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~v~gvD~S~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD  148 (523)
                      +...++.+|||+|||+|..+..+++.. +.++|+|+|+++.|++.++++....+ .++.++++|+....-..+...++||
T Consensus       248 l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD  327 (434)
T PRK14901        248 LDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFD  327 (434)
T ss_pred             hCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCC
Confidence            344678899999999999999999884 35789999999999999999875433 4689999999865210013357899


Q ss_pred             EEEE
Q 009871          149 IVTM  152 (523)
Q Consensus       149 ~V~~  152 (523)
                      .|++
T Consensus       328 ~Vl~  331 (434)
T PRK14901        328 RILL  331 (434)
T ss_pred             EEEE
Confidence            9998

>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.62  E-value=4.3e-08  Score=82.13  Aligned_cols=74  Identities=18%  Similarity=0.379  Sum_probs=61.3

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM  152 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~  152 (523)
                      -++++++|+|||+|.+..... .+..-.|+|+|+.|++++.+++|+..-..++++.++|+.++    .+..+.||.++.
T Consensus        47 iEgkkl~DLgcgcGmLs~a~s-m~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildl----e~~~g~fDtavi  120 (185)
T KOG3420|consen   47 IEGKKLKDLGCGCGMLSIAFS-MPKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDL----ELKGGIFDTAVI  120 (185)
T ss_pred             ccCcchhhhcCchhhhHHHhh-cCCCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccch----hccCCeEeeEEe
Confidence            478999999999999984443 33356799999999999999999866567789999999987    455689999987

>PRK03612 spermidine synthase; Provisional

Probab=98.62  E-value=8.8e-07  Score=94.15  Aligned_cols=132  Identities=14%  Similarity=0.051  Sum_probs=86.4

Q ss_pred             CCCeEEEECCCccHHHHHHHhcCC-CEEEEEcCChHHHHHHHHHHHhcCC---CCCCCceEEEeeecCCCCcchhhhhhc
Q 009871          335 AGKKVLELGCGCGGICSMVAAGSA-DLVVATDGDSIALDLLAQNVTANLK---PPFLAKLITKRLEWGNRDHIEAIKEEN  410 (523)
Q Consensus       335 ~~~~VLElG~G~G~l~~~~a~~~~-~~V~~~D~~~~~l~~~~~n~~~n~~---~~~~~~v~~~~ldw~~~~~~~~~~~~~  410 (523)
                      +.++|||||||+|.++..+++... .+|+++|+|+++++.+++|...+..   .....++++...|-.     +-+ ...
T Consensus       297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~-----~~l-~~~  370 (521)
T PRK03612        297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAF-----NWL-RKL  370 (521)
T ss_pred             CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHH-----HHH-HhC
Confidence            567999999999988888777654 7999999999999999986432211   112245655443321     111 112


Q ss_pred             CCCccEEEEccccCCC-C-----ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCCh---hHHHHHHHHcCCEEE
Q 009871          411 NEGFEVILGTDVSYIP-E-----AILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDE---PSMLSAATQCGFRLV  481 (523)
Q Consensus       411 ~~~fD~Ii~~d~~y~~-~-----~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~---~~~~~~~~~~gf~~~  481 (523)
                      +++||+|++. ..... .     .-.++++.+++.|         +|+|.+++.........   ..+.+.+++.||.+.
T Consensus       371 ~~~fDvIi~D-~~~~~~~~~~~L~t~ef~~~~~~~L---------~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf~v~  440 (521)
T PRK03612        371 AEKFDVIIVD-LPDPSNPALGKLYSVEFYRLLKRRL---------APDGLLVVQSTSPYFAPKAFWSIEATLEAAGLATT  440 (521)
T ss_pred             CCCCCEEEEe-CCCCCCcchhccchHHHHHHHHHhc---------CCCeEEEEecCCcccchHHHHHHHHHHHHcCCEEE
Confidence            4689999985 32211 1     1245888999999         77999887543322222   356677888999544


Q ss_pred             E
Q 009871          482 D  482 (523)
Q Consensus       482 ~  482 (523)
                      .
T Consensus       441 ~  441 (521)
T PRK03612        441 P  441 (521)
T ss_pred             E
Confidence            4

>TIGR00417 speE spermidine synthase

Probab=98.62  E-value=9.6e-07  Score=86.06  Aligned_cols=139  Identities=13%  Similarity=0.139  Sum_probs=85.4

Q ss_pred             CCCeEEEECCCccHHHHHHHhcC-CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCC
Q 009871          335 AGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG  413 (523)
Q Consensus       335 ~~~~VLElG~G~G~l~~~~a~~~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~  413 (523)
                      ..++||+||||+|.++..+++.. ..+|+++|+++.+++.+++++..........++.+...|.     ..-+.. ..++
T Consensus        72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~-----~~~l~~-~~~~  145 (270)
T TIGR00417        72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDG-----FKFLAD-TENT  145 (270)
T ss_pred             CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECch-----HHHHHh-CCCC
Confidence            34599999999998887777765 5689999999999999999875432211223455443211     111111 2468


Q ss_pred             ccEEEEccc--cCCCCC--hHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhH---HHHHHHHcCCEEEEEcCC
Q 009871          414 FEVILGTDV--SYIPEA--ILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPS---MLSAATQCGFRLVDKWPS  486 (523)
Q Consensus       414 fD~Ii~~d~--~y~~~~--~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~---~~~~~~~~gf~~~~~~~~  486 (523)
                      ||+|+..-.  ......  ...+++.++++|         +|+|.+++...........   +...+++. |.....|..
T Consensus       146 yDvIi~D~~~~~~~~~~l~~~ef~~~~~~~L---------~pgG~lv~~~~~~~~~~~~~~~~~~tl~~~-F~~v~~~~~  215 (270)
T TIGR00417       146 FDVIIVDSTDPVGPAETLFTKEFYELLKKAL---------NEDGIFVAQSESPWIQLELITDLKRDVKEA-FPITEYYTA  215 (270)
T ss_pred             ccEEEEeCCCCCCcccchhHHHHHHHHHHHh---------CCCcEEEEcCCCcccCHHHHHHHHHHHHHH-CCCeEEEEE
Confidence            999997422  111111  467788999999         6799998864432233322   23334444 666665554


Q ss_pred             CCC
Q 009871          487 KNS  489 (523)
Q Consensus       487 ~~~  489 (523)
                      ..|
T Consensus       216 ~vp  218 (270)
T TIGR00417       216 NIP  218 (270)
T ss_pred             EcC
Confidence            333

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=98.62  E-value=1.2e-07  Score=92.17  Aligned_cols=87  Identities=11%  Similarity=0.021  Sum_probs=69.8

Q ss_pred             hHHHHhhhhcCCCCCeEEEECCCccccHHHHHhhCC-CCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCC
Q 009871           63 LDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYP-DVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQ  141 (523)
Q Consensus        63 l~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~-~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~  141 (523)
                      +..+.-+.+...++..+||.+||.|.++..+++..+ +++|+|+|.++.|++.|+++... ..++.++++|..++.-  .
T Consensus         7 ll~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~-~~ri~~i~~~f~~l~~--~   83 (296)
T PRK00050          7 LLDEVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP-FGRFTLVHGNFSNLKE--V   83 (296)
T ss_pred             cHHHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc-CCcEEEEeCCHHHHHH--H
Confidence            556666666656788999999999999999999975 68999999999999999987644 5689999999986421  1


Q ss_pred             CCC--CceeEEEE
Q 009871          142 ISP--SSIDIVTM  152 (523)
Q Consensus       142 ~~~--~~fD~V~~  152 (523)
                      .+.  .+||+|++
T Consensus        84 l~~~~~~vDgIl~   96 (296)
T PRK00050         84 LAEGLGKVDGILL   96 (296)
T ss_pred             HHcCCCccCEEEE
Confidence            112  27999999

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=98.61  E-value=1.5e-07  Score=97.75  Aligned_cols=80  Identities=13%  Similarity=0.125  Sum_probs=60.8

Q ss_pred             hcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEE--EEEeeccCCccCCCCCCCcee
Q 009871           71 FSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVS--TFVCDLISDDLSRQISPSSID  148 (523)
Q Consensus        71 ~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~--~~~~d~~~~~~~~~~~~~~fD  148 (523)
                      +.+.++.+|||+|||+|..+..+++..++++|+|+|+|+.+++.++++.+..+..+.  +..+|.....  ...+.++||
T Consensus       234 L~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~--~~~~~~~fD  311 (426)
T TIGR00563       234 LAPQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPS--QWAENEQFD  311 (426)
T ss_pred             hCCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccccccc--ccccccccC
Confidence            444678899999999999999999987678999999999999999998754433333  3556655331  112467899


Q ss_pred             EEEE
Q 009871          149 IVTM  152 (523)
Q Consensus       149 ~V~~  152 (523)
                      .|++
T Consensus       312 ~Vll  315 (426)
T TIGR00563       312 RILL  315 (426)
T ss_pred             EEEE
Confidence            9997

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=98.61  E-value=7.4e-08  Score=89.51  Aligned_cols=78  Identities=22%  Similarity=0.325  Sum_probs=62.5

Q ss_pred             CCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC--CCcEEEEEeeccCCc-cCCCCCCCceeEEE
Q 009871           75 GRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISDD-LSRQISPSSIDIVT  151 (523)
Q Consensus        75 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~-~~~~~~~~~fD~V~  151 (523)
                      .+..|||+|||+|.++..++...|++.|+|||.|+.++..|.+|++..  ..++..++.+++..- .+.+...+.+|+++
T Consensus       148 ~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dllv  227 (328)
T KOG2904|consen  148 KHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLLV  227 (328)
T ss_pred             ccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEEe
Confidence            456799999999999999999988999999999999999999987543  356777766555321 12245678999999


Q ss_pred             E
Q 009871          152 M  152 (523)
Q Consensus       152 ~  152 (523)
                      |
T Consensus       228 s  228 (328)
T KOG2904|consen  228 S  228 (328)
T ss_pred             c
Confidence            9

>PLN02476 O-methyltransferase

Probab=98.60  E-value=4.7e-07  Score=87.18  Aligned_cols=108  Identities=15%  Similarity=0.139  Sum_probs=79.5

Q ss_pred             CCCCeEEEECCCccHHHHHHHhc-C-CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhh--
Q 009871          334 VAGKKVLELGCGCGGICSMVAAG-S-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEE--  409 (523)
Q Consensus       334 ~~~~~VLElG~G~G~l~~~~a~~-~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~--  409 (523)
                      .+.++|||||+|+|..++.+|.. + ..+|+.+|.+++.++.|++|++.+++.   +++.+...+..     +.+..+  
T Consensus       117 ~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~---~~I~li~GdA~-----e~L~~l~~  188 (278)
T PLN02476        117 LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVS---HKVNVKHGLAA-----ESLKSMIQ  188 (278)
T ss_pred             cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC---CcEEEEEcCHH-----HHHHHHHh
Confidence            36789999999999666666653 2 347999999999999999999999886   46666543322     222222  


Q ss_pred             --cCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee
Q 009871          410 --NNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIF  461 (523)
Q Consensus       410 --~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~  461 (523)
                        ..++||+|+.-   -....+...+..+.++|         ++||.+++-...
T Consensus       189 ~~~~~~FD~VFID---a~K~~Y~~y~e~~l~lL---------~~GGvIV~DNvL  230 (278)
T PLN02476        189 NGEGSSYDFAFVD---ADKRMYQDYFELLLQLV---------RVGGVIVMDNVL  230 (278)
T ss_pred             cccCCCCCEEEEC---CCHHHHHHHHHHHHHhc---------CCCcEEEEecCc
Confidence              13589999985   34677889999999999         678988764443

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=98.60  E-value=6.8e-08  Score=93.74  Aligned_cols=78  Identities=13%  Similarity=0.132  Sum_probs=62.9

Q ss_pred             hcCCCCCeEEEECCCccccHHHHHhhCC-CCEEEEEeCCHHHHHHHHhccccCC-CcEEEEEeeccCCccCCCCCCCcee
Q 009871           71 FSGAGRKDVLEVGCGAGNTIFPLIAAYP-DVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQISPSSID  148 (523)
Q Consensus        71 ~~~~~~~~iLDiGcG~G~~~~~l~~~~~-~~~v~gvD~S~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD  148 (523)
                      +...++.+|||+|||+|..+..+++... ...|+|+|+++.+++.++++....+ .++.+.+.|+...    +...++||
T Consensus        67 l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~----~~~~~~fD  142 (264)
T TIGR00446        67 LEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVF----GAAVPKFD  142 (264)
T ss_pred             hCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHh----hhhccCCC
Confidence            4446788999999999999999988753 4689999999999999999875433 5688999998754    23345699


Q ss_pred             EEEE
Q 009871          149 IVTM  152 (523)
Q Consensus       149 ~V~~  152 (523)
                      +|++
T Consensus       143 ~Vl~  146 (264)
T TIGR00446       143 AILL  146 (264)
T ss_pred             EEEE
Confidence            9998

>PRK04148 hypothetical protein; Provisional

Probab=98.59  E-value=2.2e-07  Score=78.83  Aligned_cols=94  Identities=20%  Similarity=0.094  Sum_probs=62.0

Q ss_pred             HHHHHhcCCCCCCCCeEEEECCCccH-HHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCC
Q 009871          323 MAAVLARNPTIVAGKKVLELGCGCGG-ICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRD  401 (523)
Q Consensus       323 la~~l~~~~~~~~~~~VLElG~G~G~-l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~  401 (523)
                      +++||.++....++++|||+|||+|. ++..+++.| ..|+++|+++.+++.++.+.           +.+...|+.+.+
T Consensus         4 i~~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~G-~~ViaIDi~~~aV~~a~~~~-----------~~~v~dDlf~p~   71 (134)
T PRK04148          4 IAEFIAENYEKGKNKKIVELGIGFYFKVAKKLKESG-FDVIVIDINEKAVEKAKKLG-----------LNAFVDDLFNPN   71 (134)
T ss_pred             HHHHHHHhcccccCCEEEEEEecCCHHHHHHHHHCC-CEEEEEECCHHHHHHHHHhC-----------CeEEECcCCCCC
Confidence            67788776655567899999999995 676777665 58999999999988887652           245555665542


Q ss_pred             cchhhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHh
Q 009871          402 HIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELT  440 (523)
Q Consensus       402 ~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll  440 (523)
                      .     .+ -..+|+|.+.      ...+.+...+.++.
T Consensus        72 ~-----~~-y~~a~liysi------rpp~el~~~~~~la   98 (134)
T PRK04148         72 L-----EI-YKNAKLIYSI------RPPRDLQPFILELA   98 (134)
T ss_pred             H-----HH-HhcCCEEEEe------CCCHHHHHHHHHHH
Confidence            1     00 1355666554      44455555555554

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=98.58  E-value=1.9e-07  Score=97.62  Aligned_cols=78  Identities=15%  Similarity=0.158  Sum_probs=62.8

Q ss_pred             cCCCCCeEEEECCCccccHHHHHhhC-CCCEEEEEeCCHHHHHHHHhccccCC-CcEEEEEeeccCCccCCCCCCCceeE
Q 009871           72 SGAGRKDVLEVGCGAGNTIFPLIAAY-PDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQISPSSIDI  149 (523)
Q Consensus        72 ~~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~v~gvD~S~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~  149 (523)
                      ...++.+|||+|||+|..+..+++.. ++.+|+|+|+++.+++.++++....+ .+++++++|+....  ..++ ++||+
T Consensus       247 ~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~--~~~~-~~fD~  323 (444)
T PRK14902        247 DPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVH--EKFA-EKFDK  323 (444)
T ss_pred             CCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCccccc--chhc-ccCCE
Confidence            33567899999999999999999874 56799999999999999998875433 45899999997541  1223 68999


Q ss_pred             EEE
Q 009871          150 VTM  152 (523)
Q Consensus       150 V~~  152 (523)
                      |++
T Consensus       324 Vl~  326 (444)
T PRK14902        324 ILV  326 (444)
T ss_pred             EEE
Confidence            998

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=98.58  E-value=2.1e-07  Score=86.07  Aligned_cols=111  Identities=14%  Similarity=0.106  Sum_probs=79.8

Q ss_pred             CCCCeEEEECCCccHHHHHHHhcC--CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhh-hc
Q 009871          334 VAGKKVLELGCGCGGICSMVAAGS--ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKE-EN  410 (523)
Q Consensus       334 ~~~~~VLElG~G~G~l~~~~a~~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~-~~  410 (523)
                      .+.++|||||||+|.-+..+|...  ..+|+.+|.+++..+.|++|++..+..   .+|++...+..+  .+..+.. ..
T Consensus        44 ~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~---~~I~~~~gda~~--~l~~l~~~~~  118 (205)
T PF01596_consen   44 TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLD---DRIEVIEGDALE--VLPELANDGE  118 (205)
T ss_dssp             HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGG---GGEEEEES-HHH--HHHHHHHTTT
T ss_pred             cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCC---CcEEEEEeccHh--hHHHHHhccC
Confidence            356799999999996666666442  359999999999999999999998875   677776544332  1222211 11


Q ss_pred             CCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee
Q 009871          411 NEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIF  461 (523)
Q Consensus       411 ~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~  461 (523)
                      .++||+|+.-   -....+...+..+.++|         ++||.+++-...
T Consensus       119 ~~~fD~VFiD---a~K~~y~~y~~~~~~ll---------~~ggvii~DN~l  157 (205)
T PF01596_consen  119 EGQFDFVFID---ADKRNYLEYFEKALPLL---------RPGGVIIADNVL  157 (205)
T ss_dssp             TTSEEEEEEE---STGGGHHHHHHHHHHHE---------EEEEEEEEETTT
T ss_pred             CCceeEEEEc---ccccchhhHHHHHhhhc---------cCCeEEEEcccc
Confidence            3589999985   46778888999999999         568877765443

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>PRK00811 spermidine synthase; Provisional

Probab=98.58  E-value=1.3e-07  Score=92.66  Aligned_cols=77  Identities=19%  Similarity=0.227  Sum_probs=62.1

Q ss_pred             CCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhcccc------CCCcEEEEEeeccCCccCCCCCCCc
Q 009871           73 GAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDF------TETRVSTFVCDLISDDLSRQISPSS  146 (523)
Q Consensus        73 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~------~~~~v~~~~~d~~~~~~~~~~~~~~  146 (523)
                      .+++.+||+||||.|..+..++++.+..+|++||+++.+++.|+++...      ..++++++.+|+... +  ...+++
T Consensus        74 ~~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~-l--~~~~~~  150 (283)
T PRK00811         74 HPNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKF-V--AETENS  150 (283)
T ss_pred             CCCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHH-H--hhCCCc
Confidence            3567899999999999999998775456899999999999999986531      357899999998753 1  123578


Q ss_pred             eeEEEE
Q 009871          147 IDIVTM  152 (523)
Q Consensus       147 fD~V~~  152 (523)
                      ||+|++
T Consensus       151 yDvIi~  156 (283)
T PRK00811        151 FDVIIV  156 (283)
T ss_pred             ccEEEE
Confidence            999999

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=98.57  E-value=1.9e-07  Score=97.41  Aligned_cols=80  Identities=18%  Similarity=0.262  Sum_probs=62.4

Q ss_pred             hhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC-CCcEEEEEeeccCCccCC-CCCCCce
Q 009871           70 YFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT-ETRVSTFVCDLISDDLSR-QISPSSI  147 (523)
Q Consensus        70 ~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~-~~~v~~~~~d~~~~~~~~-~~~~~~f  147 (523)
                      ++...++.+|||+|||+|.++..+++..  .+|+|+|+|+.|++.|+++...+ ..+++++++|+.+. ++. ++.+++|
T Consensus       287 ~l~~~~~~~vLDl~cG~G~~sl~la~~~--~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~-l~~~~~~~~~~  363 (431)
T TIGR00479       287 ALELQGEELVVDAYCGVGTFTLPLAKQA--KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETV-LPKQPWAGQIP  363 (431)
T ss_pred             HhccCCCCEEEEcCCCcCHHHHHHHHhC--CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHH-HHHHHhcCCCC
Confidence            3444566899999999999999999874  46999999999999999987543 35799999998642 110 1335679


Q ss_pred             eEEEE
Q 009871          148 DIVTM  152 (523)
Q Consensus       148 D~V~~  152 (523)
                      |+|++
T Consensus       364 D~vi~  368 (431)
T TIGR00479       364 DVLLL  368 (431)
T ss_pred             CEEEE
Confidence            99998

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>PRK04148 hypothetical protein; Provisional

Probab=98.57  E-value=2.1e-07  Score=78.97  Aligned_cols=71  Identities=20%  Similarity=0.237  Sum_probs=56.2

Q ss_pred             hcCCCCCeEEEECCCccc-cHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeE
Q 009871           71 FSGAGRKDVLEVGCGAGN-TIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDI  149 (523)
Q Consensus        71 ~~~~~~~~iLDiGcG~G~-~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~  149 (523)
                      ++..++.+|||||||+|. ++..|++.  +..|+|+|+++.+++.|+++.      ++++++|+.+.++..   -..+|+
T Consensus        12 ~~~~~~~kileIG~GfG~~vA~~L~~~--G~~ViaIDi~~~aV~~a~~~~------~~~v~dDlf~p~~~~---y~~a~l   80 (134)
T PRK04148         12 YEKGKNKKIVELGIGFYFKVAKKLKES--GFDVIVIDINEKAVEKAKKLG------LNAFVDDLFNPNLEI---YKNAKL   80 (134)
T ss_pred             cccccCCEEEEEEecCCHHHHHHHHHC--CCEEEEEECCHHHHHHHHHhC------CeEEECcCCCCCHHH---HhcCCE
Confidence            333456889999999996 88888877  678999999999999998863      688999998764321   356899


Q ss_pred             EEE
Q 009871          150 VTM  152 (523)
Q Consensus       150 V~~  152 (523)
                      |.+
T Consensus        81 iys   83 (134)
T PRK04148         81 IYS   83 (134)
T ss_pred             EEE
Confidence            977

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=98.57  E-value=1.4e-07  Score=92.82  Aligned_cols=78  Identities=13%  Similarity=-0.000  Sum_probs=58.2

Q ss_pred             CCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC---CCcEEEEE-eeccCCccCCCCCCCceeEE
Q 009871           75 GRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT---ETRVSTFV-CDLISDDLSRQISPSSIDIV  150 (523)
Q Consensus        75 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~---~~~v~~~~-~d~~~~~~~~~~~~~~fD~V  150 (523)
                      ...+|||||||+|.+...|+.+.++++++|+|+++.+++.|+++...+   ..++++.+ .|....-.....+.+.||+|
T Consensus       114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli  193 (321)
T PRK11727        114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT  193 (321)
T ss_pred             CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence            568999999999999888888877899999999999999999987654   24576653 33332100001236789999


Q ss_pred             EE
Q 009871          151 TM  152 (523)
Q Consensus       151 ~~  152 (523)
                      +|
T Consensus       194 vc  195 (321)
T PRK11727        194 LC  195 (321)
T ss_pred             Ee
Confidence            99

>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.57  E-value=1.4e-07  Score=79.13  Aligned_cols=82  Identities=21%  Similarity=0.237  Sum_probs=60.4

Q ss_pred             CCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhc
Q 009871          331 PTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEEN  410 (523)
Q Consensus       331 ~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~  410 (523)
                      -..+.|+.++|||||+|.+....+..++..|+++|++|++++..++|++.-.+..  .-+++   +..+..       +.
T Consensus        44 ygdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvqi--dlLqc---dildle-------~~  111 (185)
T KOG3420|consen   44 YGDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQI--DLLQC---DILDLE-------LK  111 (185)
T ss_pred             hccccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhhhh--heeee---eccchh-------cc
Confidence            3457999999999999977766666688899999999999999999998866542  22333   322221       22


Q ss_pred             CCCccEEEEccccC
Q 009871          411 NEGFEVILGTDVSY  424 (523)
Q Consensus       411 ~~~fD~Ii~~d~~y  424 (523)
                      .+.||..+.+..+-
T Consensus       112 ~g~fDtaviNppFG  125 (185)
T KOG3420|consen  112 GGIFDTAVINPPFG  125 (185)
T ss_pred             CCeEeeEEecCCCC
Confidence            46899999876543

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=98.56  E-value=1e-06  Score=83.46  Aligned_cols=140  Identities=16%  Similarity=0.152  Sum_probs=91.2

Q ss_pred             HHHhcCCCCCCCCeEEEECCCccHHHHHHHhc-C-CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCc
Q 009871          325 AVLARNPTIVAGKKVLELGCGCGGICSMVAAG-S-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDH  402 (523)
Q Consensus       325 ~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~-~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~  402 (523)
                      .++....++.+|.+|||-|+|+|.++..++.. + ..+|+..|..++..+.|++|++.+++.   ..+.+..-|..+...
T Consensus        30 ~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~---~~v~~~~~Dv~~~g~  106 (247)
T PF08704_consen   30 SYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLD---DNVTVHHRDVCEEGF  106 (247)
T ss_dssp             HHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCC---TTEEEEES-GGCG--
T ss_pred             HHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCC---CCceeEecceecccc
Confidence            34444557789999999999999999888864 3 359999999999999999999999885   577887777754211


Q ss_pred             chhhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhHHHHHHHHcCCEEEE
Q 009871          403 IEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLVD  482 (523)
Q Consensus       403 ~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~~~~~~~~gf~~~~  482 (523)
                      ..   .+ ...+|.|+. |+.    ..-..+..+.+.|+        ++|| .++|+.+--.......+.+++.||.-.+
T Consensus       107 ~~---~~-~~~~DavfL-Dlp----~Pw~~i~~~~~~L~--------~~gG-~i~~fsP~ieQv~~~~~~L~~~gf~~i~  168 (247)
T PF08704_consen  107 DE---EL-ESDFDAVFL-DLP----DPWEAIPHAKRALK--------KPGG-RICCFSPCIEQVQKTVEALREHGFTDIE  168 (247)
T ss_dssp             ST---T--TTSEEEEEE-ESS----SGGGGHHHHHHHE---------EEEE-EEEEEESSHHHHHHHHHHHHHTTEEEEE
T ss_pred             cc---cc-cCcccEEEE-eCC----CHHHHHHHHHHHHh--------cCCc-eEEEECCCHHHHHHHHHHHHHCCCeeeE
Confidence            00   11 357999887 443    34445666777772        1244 4555544223334577888899998766


Q ss_pred             EcC
Q 009871          483 KWP  485 (523)
Q Consensus       483 ~~~  485 (523)
                      +.+
T Consensus       169 ~~E  171 (247)
T PF08704_consen  169 TVE  171 (247)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            543

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=98.55  E-value=1.1e-07  Score=98.49  Aligned_cols=79  Identities=14%  Similarity=0.148  Sum_probs=64.0

Q ss_pred             hcCCCCCeEEEECCCccccHHHHHhhC-CCCEEEEEeCCHHHHHHHHhccccCC-CcEEEEEeeccCCccCCCCCCCcee
Q 009871           71 FSGAGRKDVLEVGCGAGNTIFPLIAAY-PDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQISPSSID  148 (523)
Q Consensus        71 ~~~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~v~gvD~S~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD  148 (523)
                      +...++.+|||+|||+|..+..+++.. ++.+|+|+|+|+.+++.++++....+ .++++.++|+..+.   .+.+++||
T Consensus       233 l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~---~~~~~~fD  309 (431)
T PRK14903        233 MELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLT---EYVQDTFD  309 (431)
T ss_pred             hCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhh---hhhhccCC
Confidence            445678899999999999999999874 46789999999999999999875432 46889999987551   13457899


Q ss_pred             EEEE
Q 009871          149 IVTM  152 (523)
Q Consensus       149 ~V~~  152 (523)
                      .|++
T Consensus       310 ~Vl~  313 (431)
T PRK14903        310 RILV  313 (431)
T ss_pred             EEEE
Confidence            9998

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=98.55  E-value=2.6e-07  Score=84.43  Aligned_cols=121  Identities=12%  Similarity=0.205  Sum_probs=80.9

Q ss_pred             CCCCCCeEEEECCCccHHHHHHHhc-CCCEEEEEcCChHHHHHHHHHHHhcCCCCCC-------------CceEE-----
Q 009871          332 TIVAGKKVLELGCGCGGICSMVAAG-SADLVVATDGDSIALDLLAQNVTANLKPPFL-------------AKLIT-----  392 (523)
Q Consensus       332 ~~~~~~~VLElG~G~G~l~~~~a~~-~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~-------------~~v~~-----  392 (523)
                      ..+.++.+|||||-+|.++..+|+. ++..|+++|+++..++.|++|++.-.-....             ..+..     
T Consensus        55 ~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~  134 (288)
T KOG2899|consen   55 DWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEAD  134 (288)
T ss_pred             cccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccc
Confidence            4568889999999999999888887 6779999999999999999988643211000             00000     


Q ss_pred             --Eeee-----cCCCC----cchhhhhhcCCCccEEEEccccC------CCCChHHHHHHHHHHhhccCCCCCCCCCcEE
Q 009871          393 --KRLE-----WGNRD----HIEAIKEENNEGFEVILGTDVSY------IPEAILPLFATAKELTASSNKSLREDQQPAF  455 (523)
Q Consensus       393 --~~ld-----w~~~~----~~~~~~~~~~~~fD~Ii~~d~~y------~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~  455 (523)
                        ...+     |....    +...+.......||+|+|-.+.-      +.+.+..+++.+.++|         .|||++
T Consensus       135 ~a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll---------~pgGiL  205 (288)
T KOG2899|consen  135 RAFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLL---------HPGGIL  205 (288)
T ss_pred             ccccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhh---------CcCcEE
Confidence              0000     00000    00111123456899999876543      3567999999999999         789999


Q ss_pred             EEEEee
Q 009871          456 ILCHIF  461 (523)
Q Consensus       456 ~l~~~~  461 (523)
                      ++--..
T Consensus       206 vvEPQp  211 (288)
T KOG2899|consen  206 VVEPQP  211 (288)
T ss_pred             EEcCCc
Confidence            985443

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=98.54  E-value=1.4e-07  Score=88.23  Aligned_cols=118  Identities=17%  Similarity=0.183  Sum_probs=82.1

Q ss_pred             hhhhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCC-cEEEEEeeccCCccCCCCCCCc
Q 009871           68 GRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTET-RVSTFVCDLISDDLSRQISPSS  146 (523)
Q Consensus        68 ~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~  146 (523)
                      .+++.......+||||||.|.++..+|+++|+..++|||+....+..|.++....+. |+.+++.|+... +..-+++++
T Consensus        41 ~~~f~~~~~pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~-l~~~~~~~s  119 (227)
T COG0220          41 SALFGNNNAPIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEV-LDYLIPDGS  119 (227)
T ss_pred             HHHhCCCCCcEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHH-HHhcCCCCC
Confidence            344443345689999999999999999999999999999999999998887765555 999999999753 222345669


Q ss_pred             eeEEEE-------------ccccccceeeecceEEecCCeEEEeeCHHHHHHH
Q 009871          147 IDIVTM-------------ERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSL  186 (523)
Q Consensus       147 fD~V~~-------------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~l  186 (523)
                      .|-|+.             .|+..+.-.-.-...++++|.+.+-...+++.+.
T Consensus       120 l~~I~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~~y~e~  172 (227)
T COG0220         120 LDKIYINFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNEEYFEW  172 (227)
T ss_pred             eeEEEEECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCHHHHHH
Confidence            999988             2221111000001257778877765555554444

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=98.53  E-value=2.9e-07  Score=85.42  Aligned_cols=81  Identities=17%  Similarity=0.079  Sum_probs=61.6

Q ss_pred             hhhhcCCCCCeEEEECCCccccHHHHHhh-CCCCEEEEEeCCHHHHHHHHhcccc-CCCcEEEEEeeccCCccCCCCCCC
Q 009871           68 GRYFSGAGRKDVLEVGCGAGNTIFPLIAA-YPDVFVYACDFSPRAVNLVMTHKDF-TETRVSTFVCDLISDDLSRQISPS  145 (523)
Q Consensus        68 ~~~~~~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~v~gvD~S~~~l~~a~~~~~~-~~~~v~~~~~d~~~~~~~~~~~~~  145 (523)
                      -+++...++.+|||||||+|..+..|+.. .+...|++||+.+..++.|+++... ...++.++++|....    .-...
T Consensus        65 l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g----~~~~a  140 (209)
T PF01135_consen   65 LEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEG----WPEEA  140 (209)
T ss_dssp             HHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGT----TGGG-
T ss_pred             HHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhc----cccCC
Confidence            34556688999999999999999999887 5566899999999999999998753 335899999998753    12346


Q ss_pred             ceeEEEE
Q 009871          146 SIDIVTM  152 (523)
Q Consensus       146 ~fD~V~~  152 (523)
                      .||.|++
T Consensus       141 pfD~I~v  147 (209)
T PF01135_consen  141 PFDRIIV  147 (209)
T ss_dssp             SEEEEEE
T ss_pred             CcCEEEE
Confidence            7999988

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=98.52  E-value=1.1e-06  Score=79.95  Aligned_cols=136  Identities=21%  Similarity=0.187  Sum_probs=96.4

Q ss_pred             eEEEECCCccHHHHHHHhcCCC-EEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCc-chhhhhhcCCCcc
Q 009871          338 KVLELGCGCGGICSMVAAGSAD-LVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDH-IEAIKEENNEGFE  415 (523)
Q Consensus       338 ~VLElG~G~G~l~~~~a~~~~~-~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~-~~~~~~~~~~~fD  415 (523)
                      +|||||||||--+..+|+..+. ...-+|.++..+..++..+...+..+....+   .+|...... ..........+||
T Consensus        28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~---~lDv~~~~w~~~~~~~~~~~~~D  104 (204)
T PF06080_consen   28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPL---ALDVSAPPWPWELPAPLSPESFD  104 (204)
T ss_pred             eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCe---EeecCCCCCccccccccCCCCcc
Confidence            6999999999989998888654 7888999998888888888777665333333   334333211 0000012356899


Q ss_pred             EEEEccccCC--CCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec--------------------C-----CChhH
Q 009871          416 VILGTDVSYI--PEAILPLFATAKELTASSNKSLREDQQPAFILCHIFR--------------------Q-----VDEPS  468 (523)
Q Consensus       416 ~Ii~~d~~y~--~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r--------------------~-----~~~~~  468 (523)
                      .|++..+++-  .+....|++.+.++|         +++|.+++-.+..                    .     .+.+.
T Consensus       105 ~i~~~N~lHI~p~~~~~~lf~~a~~~L---------~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~GiRD~e~  175 (204)
T PF06080_consen  105 AIFCINMLHISPWSAVEGLFAGAARLL---------KPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPEWGIRDIED  175 (204)
T ss_pred             eeeehhHHHhcCHHHHHHHHHHHHHhC---------CCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCCcCccCHHH
Confidence            9999999887  457899999999999         6788887754431                    1     13356


Q ss_pred             HHHHHHHcCCEEEEEcC
Q 009871          469 MLSAATQCGFRLVDKWP  485 (523)
Q Consensus       469 ~~~~~~~~gf~~~~~~~  485 (523)
                      +.+.+.++||+.+++..
T Consensus       176 v~~lA~~~GL~l~~~~~  192 (204)
T PF06080_consen  176 VEALAAAHGLELEEDID  192 (204)
T ss_pred             HHHHHHHCCCccCcccc
Confidence            77788889999877765

The function of this family is unknown.

>KOG2920 consensus Predicted methyltransferase [General function prediction only]

Probab=98.51  E-value=6.3e-08  Score=91.42  Aligned_cols=135  Identities=21%  Similarity=0.225  Sum_probs=86.9

Q ss_pred             CcccccchhHHHHHHHHhcC---CCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHH-HHHHHhcCCCC-
Q 009871          311 STGLMLWESAHLMAAVLARN---PTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLL-AQNVTANLKPP-  385 (523)
Q Consensus       311 ~~G~~~W~~a~~la~~l~~~---~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~-~~n~~~n~~~~-  385 (523)
                      ..|+.+|+++..|..++...   .-.+.+++|||||||+|..+..+...+...|.+.|.+.+.++.- -.|+..|.... 
T Consensus        89 EGg~k~wecS~dl~~~l~~e~~~~~~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~  168 (282)
T KOG2920|consen   89 EGGLKLWECSVDLLPYLKEEIGAQMSFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNILVNSHAGV  168 (282)
T ss_pred             ecceEEeecHHHHHHHHHHHhhhheEecCceeEecCCcccccchhhhhhccceeeeEecchhheeeecccceecchhhhh
Confidence            45899999999999999854   33468999999999999656666666778999999999888432 22333322211 


Q ss_pred             ---CC-CceEEE---eeecCCCCcchhhhhhcCCCccEEEEccccCCCCChHHH-HHHHHHHhhccCCCCCCCCCcEEEE
Q 009871          386 ---FL-AKLITK---RLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPL-FATAKELTASSNKSLREDQQPAFIL  457 (523)
Q Consensus       386 ---~~-~~v~~~---~ldw~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l-~~~l~~ll~~~~~~~~~~~~g~~~l  457 (523)
                         .. ......   ..||.-. .      .....||+|+++.++|.....+.+ ......++         ++.|.+++
T Consensus       169 ~~~e~~~~~~i~~s~l~dg~~~-~------t~~~~ydlIlsSetiy~~~~~~~~~~~~r~~l~---------~~D~~~~~  232 (282)
T KOG2920|consen  169 EEKENHKVDEILNSLLSDGVFN-H------TERTHYDLILSSETIYSIDSLAVLYLLHRPCLL---------KTDGVFYV  232 (282)
T ss_pred             hhhhcccceeccccccccchhh-h------ccccchhhhhhhhhhhCcchhhhhHhhhhhhcC---------Cccchhhh
Confidence               00 001111   1144110 0      001289999999999999988888 44444444         45676666


Q ss_pred             EEee
Q 009871          458 CHIF  461 (523)
Q Consensus       458 ~~~~  461 (523)
                      +...
T Consensus       233 aAK~  236 (282)
T KOG2920|consen  233 AAKK  236 (282)
T ss_pred             hhHh
Confidence            5433

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=98.51  E-value=8.3e-07  Score=84.15  Aligned_cols=126  Identities=19%  Similarity=0.249  Sum_probs=83.4

Q ss_pred             hcCCCCCeEEEECCCccccHHHHHhh-CCCCEEEEEeCCHHHHHHHHhccccC--CCcEEEEEeeccCCccCCCCCCCce
Q 009871           71 FSGAGRKDVLEVGCGAGNTIFPLIAA-YPDVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISDDLSRQISPSSI  147 (523)
Q Consensus        71 ~~~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~v~gvD~S~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~~~~~~~~~~f  147 (523)
                      +...++++|||.|.|+|.++..|++. +|..+|+..|+.++.++.|+++....  ..++.+.+.|+.+..++.. .++.|
T Consensus        36 l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~-~~~~~  114 (247)
T PF08704_consen   36 LDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEE-LESDF  114 (247)
T ss_dssp             TT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT--TTSE
T ss_pred             cCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceeccccccc-ccCcc
Confidence            45578999999999999999999987 78899999999999999999987543  3589999999976533211 13679


Q ss_pred             eEEEEccccccceeeec-ceEE-ecCCeEEEee-CHHHH---HHHHHhCCCcEEEEE
Q 009871          148 DIVTMERLTGKDQKISE-NFYV-RGDGTRAFYF-SNDFL---TSLFKENGFDVEELG  198 (523)
Q Consensus       148 D~V~~~~~~~~~~~~~~-~~~~-~~~g~~~~~~-~~~~l---~~ll~~~Gf~~~~~~  198 (523)
                      |.|+. ++..++..+.. .-.+ +++|.++.|- +.+++   .+.|++.||..+++.
T Consensus       115 DavfL-Dlp~Pw~~i~~~~~~L~~~gG~i~~fsP~ieQv~~~~~~L~~~gf~~i~~~  170 (247)
T PF08704_consen  115 DAVFL-DLPDPWEAIPHAKRALKKPGGRICCFSPCIEQVQKTVEALREHGFTDIETV  170 (247)
T ss_dssp             EEEEE-ESSSGGGGHHHHHHHE-EEEEEEEEEESSHHHHHHHHHHHHHTTEEEEEEE
T ss_pred             cEEEE-eCCCHHHHHHHHHHHHhcCCceEEEECCCHHHHHHHHHHHHHCCCeeeEEE
Confidence            99998 11122222211 0135 6677776654 55554   555677899876543

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>PLN02366 spermidine synthase

Probab=98.49  E-value=3e-06  Score=83.54  Aligned_cols=132  Identities=16%  Similarity=0.087  Sum_probs=82.7

Q ss_pred             CCCeEEEECCCccHHHHHHHhcC-CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCC
Q 009871          335 AGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG  413 (523)
Q Consensus       335 ~~~~VLElG~G~G~l~~~~a~~~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~  413 (523)
                      ..++||+||||.|++...+++.. ..+|+++|+++.+++.+++.+..-.......++++...|-.     .-+...+.++
T Consensus        91 ~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~-----~~l~~~~~~~  165 (308)
T PLN02366         91 NPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGV-----EFLKNAPEGT  165 (308)
T ss_pred             CCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHH-----HHHhhccCCC
Confidence            46799999999998888887764 46899999999999999998754221122356666543311     1111223468


Q ss_pred             ccEEEEccccCC--CC---ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCC---hhHHHHHHHHcCCEEE
Q 009871          414 FEVILGTDVSYI--PE---AILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVD---EPSMLSAATQCGFRLV  481 (523)
Q Consensus       414 fD~Ii~~d~~y~--~~---~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~---~~~~~~~~~~~gf~~~  481 (523)
                      ||+|+. |..-.  +.   .-..+++.++++|         +|+|.+++-...-...   ...+.+.+++......
T Consensus       166 yDvIi~-D~~dp~~~~~~L~t~ef~~~~~~~L---------~pgGvlv~q~~s~~~~~~~~~~i~~tl~~~F~~~v  231 (308)
T PLN02366        166 YDAIIV-DSSDPVGPAQELFEKPFFESVARAL---------RPGGVVCTQAESMWLHMDLIEDLIAICRETFKGSV  231 (308)
T ss_pred             CCEEEE-cCCCCCCchhhhhHHHHHHHHHHhc---------CCCcEEEECcCCcccchHHHHHHHHHHHHHCCCce
Confidence            999997 43211  11   1346789999999         6799986532221111   2345566666643333

>PRK03612 spermidine synthase; Provisional

Probab=98.49  E-value=4.7e-07  Score=96.19  Aligned_cols=117  Identities=20%  Similarity=0.231  Sum_probs=79.8

Q ss_pred             CCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccc--------cCCCcEEEEEeeccCCccCCCCCC
Q 009871           73 GAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKD--------FTETRVSTFVCDLISDDLSRQISP  144 (523)
Q Consensus        73 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~--------~~~~~v~~~~~d~~~~~~~~~~~~  144 (523)
                      .+++++|||||||+|..+..++++.+..+|+++|++++|++.|+++..        ...++++++.+|..+. +  ...+
T Consensus       295 ~~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~-l--~~~~  371 (521)
T PRK03612        295 SARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNW-L--RKLA  371 (521)
T ss_pred             CCCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHH-H--HhCC
Confidence            356789999999999999998876333689999999999999998421        1246899999998752 1  1124


Q ss_pred             CceeEEEEcccccc---ceee-ec------ceEEecCCeEEE-----eeCH---HHHHHHHHhCCC
Q 009871          145 SSIDIVTMERLTGK---DQKI-SE------NFYVRGDGTRAF-----YFSN---DFLTSLFKENGF  192 (523)
Q Consensus       145 ~~fD~V~~~~~~~~---~~~~-~~------~~~~~~~g~~~~-----~~~~---~~l~~ll~~~Gf  192 (523)
                      ++||+|++.-....   ...+ ..      .-.++++|.+..     ++..   .++.+.+++.||
T Consensus       372 ~~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf  437 (521)
T PRK03612        372 EKFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGL  437 (521)
T ss_pred             CCCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHcCC
Confidence            68999999110000   0000 00      115788888765     3333   357778888999

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=98.49  E-value=3e-06  Score=85.68  Aligned_cols=141  Identities=13%  Similarity=0.024  Sum_probs=85.1

Q ss_pred             HHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCC
Q 009871          320 AHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGN  399 (523)
Q Consensus       320 a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~  399 (523)
                      +..|.+++.+.... .+.+|||||||+|.++..++.. +.+|+++|+++.|++.+++|+..|++.    ++.+...|..+
T Consensus       183 ~~~l~~~v~~~~~~-~~~~vlDl~~G~G~~sl~la~~-~~~v~~vE~~~~av~~a~~n~~~~~~~----~v~~~~~d~~~  256 (353)
T TIGR02143       183 NIKMLEWACEVTQG-SKGDLLELYCGNGNFSLALAQN-FRRVLATEIAKPSVNAAQYNIAANNID----NVQIIRMSAEE  256 (353)
T ss_pred             HHHHHHHHHHHhhc-CCCcEEEEeccccHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCC----cEEEEEcCHHH
Confidence            34444444443322 2347999999999888866655 468999999999999999999999874    46666555532


Q ss_pred             CCcchhhhh---h---c-----CCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhH
Q 009871          400 RDHIEAIKE---E---N-----NEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPS  468 (523)
Q Consensus       400 ~~~~~~~~~---~---~-----~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~  468 (523)
                      .  +.....   +   .     ...||+|+.- .- .....+.+++.+   .         ++++.+|++..+..... +
T Consensus       257 ~--~~~~~~~~~~~~~~~~~~~~~~~d~v~lD-PP-R~G~~~~~l~~l---~---------~~~~ivYvsC~p~tlaR-D  319 (353)
T TIGR02143       257 F--TQAMNGVREFRRLKGIDLKSYNCSTIFVD-PP-RAGLDPDTCKLV---Q---------AYERILYISCNPETLKA-N  319 (353)
T ss_pred             H--HHHHhhccccccccccccccCCCCEEEEC-CC-CCCCcHHHHHHH---H---------cCCcEEEEEcCHHHHHH-H
Confidence            1  110000   0   0     1248999984 44 334445555544   4         34778888765532221 2


Q ss_pred             HHHHHHHcCCEEEEEcC
Q 009871          469 MLSAATQCGFRLVDKWP  485 (523)
Q Consensus       469 ~~~~~~~~gf~~~~~~~  485 (523)
                      +-. +. .||++.++-.
T Consensus       320 l~~-L~-~~Y~l~~v~~  334 (353)
T TIGR02143       320 LEQ-LS-ETHRVERFAL  334 (353)
T ss_pred             HHH-Hh-cCcEEEEEEE
Confidence            222 22 3488887754

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=98.49  E-value=4e-07  Score=89.20  Aligned_cols=88  Identities=20%  Similarity=0.246  Sum_probs=65.2

Q ss_pred             cccchhhhHHHHhhhhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC--CCcEEEEEeec
Q 009871           56 FFKDRHYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDL  133 (523)
Q Consensus        56 f~~~~~~l~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~--~~~v~~~~~d~  133 (523)
                      |..+...+. .+-+.....++.+|||||||+|.++..+++..  .+|+|+|+++.|++.++++....  ..+++++++|+
T Consensus        18 FL~d~~i~~-~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~--~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Da   94 (294)
T PTZ00338         18 ILKNPLVLD-KIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLA--KKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDA   94 (294)
T ss_pred             ccCCHHHHH-HHHHhcCCCCcCEEEEecCchHHHHHHHHHhC--CcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCH
Confidence            433444333 33333444677899999999999999999884  46999999999999999876432  36799999999


Q ss_pred             cCCccCCCCCCCceeEEEE
Q 009871          134 ISDDLSRQISPSSIDIVTM  152 (523)
Q Consensus       134 ~~~~~~~~~~~~~fD~V~~  152 (523)
                      ...+    +  ..||+|++
T Consensus        95 l~~~----~--~~~d~Vva  107 (294)
T PTZ00338         95 LKTE----F--PYFDVCVA  107 (294)
T ss_pred             hhhc----c--cccCEEEe
Confidence            8653    2  35788876

>TIGR00755 ksgA dimethyladenosine transferase

Probab=98.48  E-value=5e-07  Score=87.24  Aligned_cols=67  Identities=21%  Similarity=0.214  Sum_probs=55.3

Q ss_pred             HhhhhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCC
Q 009871           67 WGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISD  136 (523)
Q Consensus        67 ~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~  136 (523)
                      +-+.+...++.+|||||||+|.++..|+++++.  |+|+|+++.|++.++++... ..+++++++|+...
T Consensus        21 i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~~--v~~iE~d~~~~~~l~~~~~~-~~~v~v~~~D~~~~   87 (253)
T TIGR00755        21 IVEAANVLEGDVVLEIGPGLGALTEPLLKRAKK--VTAIEIDPRLAEILRKLLSL-YERLEVIEGDALKV   87 (253)
T ss_pred             HHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCCc--EEEEECCHHHHHHHHHHhCc-CCcEEEEECchhcC
Confidence            333444467789999999999999999999754  99999999999999886532 46799999999876

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=98.47  E-value=8.7e-07  Score=90.04  Aligned_cols=100  Identities=17%  Similarity=0.130  Sum_probs=72.2

Q ss_pred             CCeEEEECCCccHHHHHHHhc-CCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCc
Q 009871          336 GKKVLELGCGCGGICSMVAAG-SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGF  414 (523)
Q Consensus       336 ~~~VLElG~G~G~l~~~~a~~-~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~f  414 (523)
                      +.+|||++||+|.+++.++.. ++.+|+++|+++.+++.+++|++.|++.    .+.+...|..      .+... ...|
T Consensus        58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~----~~~v~~~Da~------~~l~~-~~~f  126 (382)
T PRK04338         58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLE----NEKVFNKDAN------ALLHE-ERKF  126 (382)
T ss_pred             CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC----ceEEEhhhHH------HHHhh-cCCC
Confidence            468999999999999888775 5568999999999999999999999875    2333332221      11010 3579


Q ss_pred             cEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEE
Q 009871          415 EVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCH  459 (523)
Q Consensus       415 D~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~  459 (523)
                      |+|+. |. |  ....+++...-..+         +++|.++++.
T Consensus       127 D~V~l-DP-~--Gs~~~~l~~al~~~---------~~~gilyvSA  158 (382)
T PRK04338        127 DVVDI-DP-F--GSPAPFLDSAIRSV---------KRGGLLCVTA  158 (382)
T ss_pred             CEEEE-CC-C--CCcHHHHHHHHHHh---------cCCCEEEEEe
Confidence            99999 54 3  44567777755556         5688988873

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=98.47  E-value=2.5e-07  Score=101.77  Aligned_cols=139  Identities=13%  Similarity=0.128  Sum_probs=90.5

Q ss_pred             CCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCC---CcEEEEEeeccCCccCCCCCCCceeEEE
Q 009871           75 GRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE---TRVSTFVCDLISDDLSRQISPSSIDIVT  151 (523)
Q Consensus        75 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~---~~v~~~~~d~~~~~~~~~~~~~~fD~V~  151 (523)
                      .+.+|||+|||+|.++..++..+ ..+|++||+|+.|++.|+++...++   .+++++++|+.+. +. .. .++||+|+
T Consensus       538 ~g~rVLDlf~gtG~~sl~aa~~G-a~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~-l~-~~-~~~fDlIi  613 (702)
T PRK11783        538 KGKDFLNLFAYTGTASVHAALGG-AKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAW-LK-EA-REQFDLIF  613 (702)
T ss_pred             CCCeEEEcCCCCCHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHH-HH-Hc-CCCcCEEE
Confidence            57899999999999999999863 3469999999999999999875442   3689999998642 11 11 46899999


Q ss_pred             E--ccccccceee-------------ec--ceEEecCCeEEEee---CHHHHHHHHHhCCCcEEEEEeEeeeeeecccCc
Q 009871          152 M--ERLTGKDQKI-------------SE--NFYVRGDGTRAFYF---SNDFLTSLFKENGFDVEELGLCCKQVENRAREL  211 (523)
Q Consensus       152 ~--~~~~~~~~~~-------------~~--~~~~~~~g~~~~~~---~~~~l~~ll~~~Gf~~~~~~~~~~~~~~~~~~~  211 (523)
                      +  ..| ......             ..  .-.++++|.+++..   ......+.+.++|+.+..+.......... ...
T Consensus       614 lDPP~f-~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~~Dhp-~~~  691 (702)
T PRK11783        614 IDPPTF-SNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRGFKMDEEGLAKLGLKAEEITAKTLPPDFA-RNP  691 (702)
T ss_pred             ECCCCC-CCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCChhHHHHHhCCCeEEEEecCCCCCCCC-CCc
Confidence            9  222 111110             00  12567888775532   22234777888998877665433222221 123


Q ss_pred             cceeEEEE
Q 009871          212 VMNRRWVQ  219 (523)
Q Consensus       212 ~~~r~~~~  219 (523)
                      +.+++|..
T Consensus       692 ~~~~~~~~  699 (702)
T PRK11783        692 KIHNCWLI  699 (702)
T ss_pred             ccceeEEE
Confidence            35677754

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=98.47  E-value=7.2e-07  Score=83.01  Aligned_cols=121  Identities=18%  Similarity=0.165  Sum_probs=86.9

Q ss_pred             hcCCCCCeEEEECCCccccHHHHHhh-CCCCEEEEEeCCHHHHHHHHhccccC--CCcEEEEEeeccCCccCCCCCCCce
Q 009871           71 FSGAGRKDVLEVGCGAGNTIFPLIAA-YPDVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISDDLSRQISPSSI  147 (523)
Q Consensus        71 ~~~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~v~gvD~S~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~~~~~~~~~~f  147 (523)
                      +...++.+|||.|.|+|.++..|+.. +|..+|+.+|+-++..+.|++|.+..  ..++.+..+|+.+.    .+ ...|
T Consensus        90 ~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~----~~-~~~v  164 (256)
T COG2519          90 LGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREG----ID-EEDV  164 (256)
T ss_pred             cCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccc----cc-cccc
Confidence            34578999999999999999999976 77789999999999999999987542  34588899999875    23 3489


Q ss_pred             eEEEEccccccceeeec-ceEEecCCeEEEee-CHHHH---HHHHHhCCCcEEEE
Q 009871          148 DIVTMERLTGKDQKISE-NFYVRGDGTRAFYF-SNDFL---TSLFKENGFDVEEL  197 (523)
Q Consensus       148 D~V~~~~~~~~~~~~~~-~~~~~~~g~~~~~~-~~~~l---~~ll~~~Gf~~~~~  197 (523)
                      |+|+. ++..++..+.. .-.++++|...+|. +.+++   .+.|++.||..++.
T Consensus       165 Dav~L-Dmp~PW~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~~~g~~~ie~  218 (256)
T COG2519         165 DAVFL-DLPDPWNVLEHVSDALKPGGVVVVYSPTVEQVEKTVEALRERGFVDIEA  218 (256)
T ss_pred             CEEEE-cCCChHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhcCccchhh
Confidence            99998 11122222211 11577888877654 55555   44456778876543

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=98.46  E-value=5.5e-07  Score=87.81  Aligned_cols=87  Identities=18%  Similarity=0.153  Sum_probs=62.1

Q ss_pred             HHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcc
Q 009871          324 AAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHI  403 (523)
Q Consensus       324 a~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~  403 (523)
                      ++.+.+.....++.+|||+|||+|.++..++..+. +|+++|+|+.|++.+++|+..       .++.+...|+.+.. .
T Consensus        31 ~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~avE~d~~~~~~~~~~~~~-------~~v~~i~~D~~~~~-~  101 (272)
T PRK00274         31 LDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERAA-KVTAVEIDRDLAPILAETFAE-------DNLTIIEGDALKVD-L  101 (272)
T ss_pred             HHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhCC-cEEEEECCHHHHHHHHHhhcc-------CceEEEEChhhcCC-H
Confidence            44444444556788999999999999999988865 899999999999999887642       35666666665431 1


Q ss_pred             hhhhhhcCCCccEEEEccccCCC
Q 009871          404 EAIKEENNEGFEVILGTDVSYIP  426 (523)
Q Consensus       404 ~~~~~~~~~~fD~Ii~~d~~y~~  426 (523)
                            ....+|.|+++- .|+.
T Consensus       102 ------~~~~~~~vv~Nl-PY~i  117 (272)
T PRK00274        102 ------SELQPLKVVANL-PYNI  117 (272)
T ss_pred             ------HHcCcceEEEeC-Cccc
Confidence                  111158888874 4543

>PLN02366 spermidine synthase

Probab=98.46  E-value=4.4e-07  Score=89.36  Aligned_cols=78  Identities=17%  Similarity=0.213  Sum_probs=61.3

Q ss_pred             CCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhcccc-----CCCcEEEEEeeccCCccCCCCCCCce
Q 009871           73 GAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDF-----TETRVSTFVCDLISDDLSRQISPSSI  147 (523)
Q Consensus        73 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~-----~~~~v~~~~~d~~~~~~~~~~~~~~f  147 (523)
                      .+++.+||+||||.|..+..++++.+..+|+.||+++.+++.|++....     ..++++++.+|.... +. ..++++|
T Consensus        89 ~~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~-l~-~~~~~~y  166 (308)
T PLN02366         89 IPNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEF-LK-NAPEGTY  166 (308)
T ss_pred             CCCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHH-Hh-hccCCCC
Confidence            3568899999999999999998774346799999999999999996532     347899999997532 00 1235689


Q ss_pred             eEEEE
Q 009871          148 DIVTM  152 (523)
Q Consensus       148 D~V~~  152 (523)
                      |+|++
T Consensus       167 DvIi~  171 (308)
T PLN02366        167 DAIIV  171 (308)
T ss_pred             CEEEE
Confidence            99999

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.45  E-value=8.9e-07  Score=80.66  Aligned_cols=84  Identities=13%  Similarity=0.030  Sum_probs=67.2

Q ss_pred             hHHHHhhhhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCC-CcEEEEEeeccCCccCCC
Q 009871           63 LDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQ  141 (523)
Q Consensus        63 l~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~  141 (523)
                      +...+.+++...++.+|||||||+|..+.-|++..  .+|+.+|..+...+.|+++....+ .++.+.++|...- +   
T Consensus        60 ~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~--~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G-~---  133 (209)
T COG2518          60 MVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLV--GRVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKG-W---  133 (209)
T ss_pred             HHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHh--CeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccC-C---
Confidence            33344456677889999999999999999999884  379999999999999999875443 4799999998753 1   


Q ss_pred             CCCCceeEEEE
Q 009871          142 ISPSSIDIVTM  152 (523)
Q Consensus       142 ~~~~~fD~V~~  152 (523)
                      -+...||.|+.
T Consensus       134 ~~~aPyD~I~V  144 (209)
T COG2518         134 PEEAPYDRIIV  144 (209)
T ss_pred             CCCCCcCEEEE
Confidence            23478999987

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=98.43  E-value=2.2e-06  Score=86.57  Aligned_cols=101  Identities=17%  Similarity=0.121  Sum_probs=74.8

Q ss_pred             CCeEEEECCCccHHHHHHHhc--CCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCC
Q 009871          336 GKKVLELGCGCGGICSMVAAG--SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG  413 (523)
Q Consensus       336 ~~~VLElG~G~G~l~~~~a~~--~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~  413 (523)
                      +.+|||+.||+|..++.+++.  ++.+|+++|+++.+++.+++|++.|+..    .+.+...|....     + .....+
T Consensus        45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~----~~~v~~~Da~~~-----l-~~~~~~  114 (374)
T TIGR00308        45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVE----NIEVPNEDAANV-----L-RYRNRK  114 (374)
T ss_pred             CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCC----cEEEEchhHHHH-----H-HHhCCC
Confidence            358999999999999999987  6789999999999999999999999764    344433322211     1 111357


Q ss_pred             ccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEE
Q 009871          414 FEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCH  459 (523)
Q Consensus       414 fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~  459 (523)
                      ||+|.. |. |.  ...+++..+.+.+         +.+|.++++.
T Consensus       115 fDvIdl-DP-fG--s~~~fld~al~~~---------~~~glL~vTa  147 (374)
T TIGR00308       115 FHVIDI-DP-FG--TPAPFVDSAIQAS---------AERGLLLVTA  147 (374)
T ss_pred             CCEEEe-CC-CC--CcHHHHHHHHHhc---------ccCCEEEEEe
Confidence            999998 66 53  3457888888888         4578887763

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=98.43  E-value=1e-06  Score=81.00  Aligned_cols=93  Identities=22%  Similarity=0.227  Sum_probs=65.3

Q ss_pred             CCCCCeEEEECCCccHHHHHHHhc-CCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcC
Q 009871          333 IVAGKKVLELGCGCGGICSMVAAG-SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENN  411 (523)
Q Consensus       333 ~~~~~~VLElG~G~G~l~~~~a~~-~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~  411 (523)
                      ..+|..|||+.||.|.+++.+|+. .++.|++.|++|.+++.+++|++.|++.   ..+.+...|..+..        ..
T Consensus        99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~---~~i~~~~~D~~~~~--------~~  167 (200)
T PF02475_consen   99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVE---NRIEVINGDAREFL--------PE  167 (200)
T ss_dssp             --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-T---TTEEEEES-GGG-----------T
T ss_pred             CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCC---CeEEEEcCCHHHhc--------Cc
Confidence            347889999999999999998873 4568999999999999999999999986   56766666654321        14


Q ss_pred             CCccEEEEccccCCCCChHHHHHHHHHHh
Q 009871          412 EGFEVILGTDVSYIPEAILPLFATAKELT  440 (523)
Q Consensus       412 ~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll  440 (523)
                      ..||-|+++-    +.....++..+..++
T Consensus       168 ~~~drvim~l----p~~~~~fl~~~~~~~  192 (200)
T PF02475_consen  168 GKFDRVIMNL----PESSLEFLDAALSLL  192 (200)
T ss_dssp             T-EEEEEE------TSSGGGGHHHHHHHE
T ss_pred             cccCEEEECC----hHHHHHHHHHHHHHh
Confidence            6899999972    334456788888888

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=98.42  E-value=2.7e-07  Score=94.19  Aligned_cols=115  Identities=12%  Similarity=0.185  Sum_probs=76.7

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCC---CcEEEEEeeccCCccCC-CCCCCceeE
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE---TRVSTFVCDLISDDLSR-QISPSSIDI  149 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~---~~v~~~~~d~~~~~~~~-~~~~~~fD~  149 (523)
                      .++.+|||+|||+|.++..++... ..+|+++|+|+.|++.|+++...++   .+++++++|+.+. +.. ....++||+
T Consensus       219 ~~g~rVLDlfsgtG~~~l~aa~~g-a~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~-l~~~~~~~~~fDl  296 (396)
T PRK15128        219 VENKRVLNCFSYTGGFAVSALMGG-CSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKL-LRTYRDRGEKFDV  296 (396)
T ss_pred             cCCCeEEEeccCCCHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHH-HHHHHhcCCCCCE
Confidence            357899999999999987766542 4589999999999999999876543   3789999999753 000 012458999


Q ss_pred             EEE--ccccccceeee------------cceEEecCCeEEEe-----eCHHHHHHHHHhC
Q 009871          150 VTM--ERLTGKDQKIS------------ENFYVRGDGTRAFY-----FSNDFLTSLFKEN  190 (523)
Q Consensus       150 V~~--~~~~~~~~~~~------------~~~~~~~~g~~~~~-----~~~~~l~~ll~~~  190 (523)
                      |++  ..|......+.            ..-.++++|.++.+     .+.+++.+++.++
T Consensus       297 VilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~~~~f~~~v~~a  356 (396)
T PRK15128        297 IVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLMTSDLFQKIIADA  356 (396)
T ss_pred             EEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCHHHHHHHHHHH
Confidence            999  22211110000            01257788877653     3667776666544

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=98.41  E-value=1.5e-06  Score=89.85  Aligned_cols=107  Identities=19%  Similarity=0.147  Sum_probs=73.0

Q ss_pred             HHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcC-----CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeec
Q 009871          323 MAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGS-----ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEW  397 (523)
Q Consensus       323 la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~-----~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw  397 (523)
                      |.+.........+++.|||+|||+|.|+..+++.+     +.+|++++.++.++..++..+..|+..   ++|++...|-
T Consensus       174 l~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~---~~V~vi~~d~  250 (448)
T PF05185_consen  174 LKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWG---DKVTVIHGDM  250 (448)
T ss_dssp             HHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTT---TTEEEEES-T
T ss_pred             HHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCC---CeEEEEeCcc
Confidence            33444433333357899999999998876665543     569999999999998888888888875   6788887666


Q ss_pred             CCCCcchhhhhhcCCCccEEEEccc--cCCCCChHHHHHHHHHHh
Q 009871          398 GNRDHIEAIKEENNEGFEVILGTDV--SYIPEAILPLFATAKELT  440 (523)
Q Consensus       398 ~~~~~~~~~~~~~~~~fD~Ii~~d~--~y~~~~~~~l~~~l~~ll  440 (523)
                      .+.+.        +.+.|+||+=-+  +-..+..+..+....++|
T Consensus       251 r~v~l--------pekvDIIVSElLGsfg~nEl~pE~Lda~~rfL  287 (448)
T PF05185_consen  251 REVEL--------PEKVDIIVSELLGSFGDNELSPECLDAADRFL  287 (448)
T ss_dssp             TTSCH--------SS-EEEEEE---BTTBTTTSHHHHHHHGGGGE
T ss_pred             cCCCC--------CCceeEEEEeccCCccccccCHHHHHHHHhhc
Confidence            55421        458999996533  233557788889999999

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=98.41  E-value=3.1e-07  Score=87.35  Aligned_cols=80  Identities=18%  Similarity=0.210  Sum_probs=61.9

Q ss_pred             CCCCCeEEEECCCccccHHHHHhhC-CCCEEEEEeCCHHHHHHHHhccccC--CCcEEEEEeeccCC--ccCCCCCCCce
Q 009871           73 GAGRKDVLEVGCGAGNTIFPLIAAY-PDVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISD--DLSRQISPSSI  147 (523)
Q Consensus        73 ~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~v~gvD~S~~~l~~a~~~~~~~--~~~v~~~~~d~~~~--~~~~~~~~~~f  147 (523)
                      ..++.+|||||||+|..+..+++.. ++.+|+++|+++++++.|+++....  ..+++++.+|+.+.  .+....+.++|
T Consensus        66 ~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~f  145 (234)
T PLN02781         66 IMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEF  145 (234)
T ss_pred             HhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCC
Confidence            3567899999999999999898874 4689999999999999999987543  35799999999752  01001124689


Q ss_pred             eEEEE
Q 009871          148 DIVTM  152 (523)
Q Consensus       148 D~V~~  152 (523)
                      |+|+.
T Consensus       146 D~Vfi  150 (234)
T PLN02781        146 DFAFV  150 (234)
T ss_pred             CEEEE
Confidence            99977

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=98.41  E-value=4.9e-07  Score=83.30  Aligned_cols=75  Identities=9%  Similarity=0.076  Sum_probs=58.2

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC-CCcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT-ETRVSTFVCDLISDDLSRQISPSSIDIVTM  152 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~-~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~  152 (523)
                      ..+.+|||+|||+|.++..++.+. ..+|+++|+++.+++.|+++.+.. ..+++++++|+.+. ++  ...++||+|++
T Consensus        52 ~~~~~vLDl~~GsG~l~l~~lsr~-a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~-l~--~~~~~fDlV~~  127 (199)
T PRK10909         52 IVDARCLDCFAGSGALGLEALSRY-AAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSF-LA--QPGTPHNVVFV  127 (199)
T ss_pred             cCCCEEEEcCCCccHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHH-Hh--hcCCCceEEEE
Confidence            356799999999999998765554 358999999999999999986543 24789999998752 11  12457999988

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=98.41  E-value=2.6e-06  Score=77.52  Aligned_cols=137  Identities=18%  Similarity=0.134  Sum_probs=82.5

Q ss_pred             HHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCC----------EEEEEcCChHHHHHHHHHHHhcCCCCCCCceEE
Q 009871          323 MAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSAD----------LVVATDGDSIALDLLAQNVTANLKPPFLAKLIT  392 (523)
Q Consensus       323 la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~----------~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~  392 (523)
                      +|..|.......++..|||--||+|.+.+.++..+..          ++++.|+++.+++.++.|+...+..   ..+.+
T Consensus        16 lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~---~~i~~   92 (179)
T PF01170_consen   16 LAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVE---DYIDF   92 (179)
T ss_dssp             HHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-C---GGEEE
T ss_pred             HHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccC---CceEE
Confidence            3444444334457789999999999888777665322          3899999999999999999988775   45666


Q ss_pred             EeeecCCCCcchhhhhhcCCCccEEEEccccCCCC---------ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecC
Q 009871          393 KRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPE---------AILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ  463 (523)
Q Consensus       393 ~~ldw~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~---------~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~  463 (523)
                      ...|..+.       ++..+.+|+||++ .-|...         .+..+++.+++++         ++ ..+++....  
T Consensus        93 ~~~D~~~l-------~~~~~~~d~Ivtn-PPyG~r~~~~~~~~~ly~~~~~~~~~~l---------~~-~~v~l~~~~--  152 (179)
T PF01170_consen   93 IQWDAREL-------PLPDGSVDAIVTN-PPYGRRLGSKKDLEKLYRQFLRELKRVL---------KP-RAVFLTTSN--  152 (179)
T ss_dssp             EE--GGGG-------GGTTSBSCEEEEE---STTSHCHHHHHHHHHHHHHHHHHCHS---------TT-CEEEEEESC--
T ss_pred             Eecchhhc-------ccccCCCCEEEEC-cchhhhccCHHHHHHHHHHHHHHHHHHC---------CC-CEEEEEECC--
Confidence            65444332       1335689999985 445422         3344555666666         34 444444322  


Q ss_pred             CChhHHHHHHHHcCCEEEEEcC
Q 009871          464 VDEPSMLSAATQCGFRLVDKWP  485 (523)
Q Consensus       464 ~~~~~~~~~~~~~gf~~~~~~~  485 (523)
                         ..+...+...+++..+...
T Consensus       153 ---~~~~~~~~~~~~~~~~~~~  171 (179)
T PF01170_consen  153 ---RELEKALGLKGWRKRKLYN  171 (179)
T ss_dssp             ---CCHHHHHTSTTSEEEEEEE
T ss_pred             ---HHHHHHhcchhhceEEEEE
Confidence               2355666666777766543

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=98.41  E-value=9.5e-07  Score=71.73  Aligned_cols=71  Identities=25%  Similarity=0.362  Sum_probs=56.0

Q ss_pred             eEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhcc-ccCCCcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871           78 DVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHK-DFTETRVSTFVCDLISDDLSRQISPSSIDIVTM  152 (523)
Q Consensus        78 ~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~-~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~  152 (523)
                      +|||+|||+|..+..+++ .+..+++++|+++.+++.+++.. .....++++...|+.+...   ...++||+|++
T Consensus         1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~d~i~~   72 (107)
T cd02440           1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPP---EADESFDVIIS   72 (107)
T ss_pred             CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhcc---ccCCceEEEEE
Confidence            589999999999999888 45678999999999999998432 2234678899999886521   24578999988

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=98.39  E-value=1.3e-06  Score=86.88  Aligned_cols=138  Identities=14%  Similarity=0.085  Sum_probs=85.2

Q ss_pred             cccchhHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCC--CCCceE
Q 009871          314 LMLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPP--FLAKLI  391 (523)
Q Consensus       314 ~~~W~~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~--~~~~v~  391 (523)
                      .-.|=-+.++..++.......++.+|||||||-|+-..=....+...++++|++...|+.|+++...-....  ...+..
T Consensus        41 fNNwvKs~LI~~~~~~~~~~~~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~  120 (331)
T PF03291_consen   41 FNNWVKSVLIQKYAKKVKQNRPGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFD  120 (331)
T ss_dssp             HHHHHHHHHHHHHCHCCCCTTTT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEEC
T ss_pred             HhHHHHHHHHHHHHHhhhccCCCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhcccccccccccc
Confidence            346888888888886544334788999999999876666666678899999999999999998873211100  001111


Q ss_pred             EE-eeecCCCCcchhhh-hhcC--CCccEEEEccccCC----CCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee
Q 009871          392 TK-RLEWGNRDHIEAIK-EENN--EGFEVILGTDVSYI----PEAILPLFATAKELTASSNKSLREDQQPAFILCHIF  461 (523)
Q Consensus       392 ~~-~ldw~~~~~~~~~~-~~~~--~~fD~Ii~~d~~y~----~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~  461 (523)
                      +. .+-..+. ....+. .+.+  .+||+|=+--.+++    .+....+++.+...|         +|||.||.+.+.
T Consensus       121 f~a~f~~~D~-f~~~l~~~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~L---------k~GG~FIgT~~d  188 (331)
T PF03291_consen  121 FIAEFIAADC-FSESLREKLPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLL---------KPGGYFIGTTPD  188 (331)
T ss_dssp             CEEEEEESTT-CCSHHHCTSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTE---------EEEEEEEEEEE-
T ss_pred             chhheecccc-ccchhhhhccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhc---------CCCCEEEEEecC
Confidence            11 1222222 111111 1233  49999998866554    345677899999999         679999987654

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=98.39  E-value=3.9e-06  Score=82.76  Aligned_cols=126  Identities=19%  Similarity=0.165  Sum_probs=87.4

Q ss_pred             CCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCc
Q 009871          335 AGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGF  414 (523)
Q Consensus       335 ~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~f  414 (523)
                      .|.+|||+-||.|.+++.+|..+..+|+++|++|.+++.+++|+.+|++.   ..+.....|-.+..       ...+.+
T Consensus       188 ~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~---~~v~~i~gD~rev~-------~~~~~a  257 (341)
T COG2520         188 EGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVE---GRVEPILGDAREVA-------PELGVA  257 (341)
T ss_pred             CCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCcc---ceeeEEeccHHHhh-------hccccC
Confidence            58999999999999999999998878999999999999999999999997   33555544433221       011579


Q ss_pred             cEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCC-----hhHHHHHHHHcCCEEEEE
Q 009871          415 EVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVD-----EPSMLSAATQCGFRLVDK  483 (523)
Q Consensus       415 D~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~-----~~~~~~~~~~~gf~~~~~  483 (523)
                      |-|++.-    +..-..++....+++         +++|.+..-...+...     ...+...+.+.|.++...
T Consensus       258 DrIim~~----p~~a~~fl~~A~~~~---------k~~g~iHyy~~~~e~~~~~~~~~~i~~~~~~~~~~~~v~  318 (341)
T COG2520         258 DRIIMGL----PKSAHEFLPLALELL---------KDGGIIHYYEFVPEDDIEERPEKRIKSAARKGGYKVEVL  318 (341)
T ss_pred             CEEEeCC----CCcchhhHHHHHHHh---------hcCcEEEEEeccchhhcccchHHHHHHHHhhccCcceEE
Confidence            9999972    223455677777777         4466654433332222     134556666777655544

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=98.39  E-value=1.7e-06  Score=83.70  Aligned_cols=86  Identities=17%  Similarity=0.149  Sum_probs=62.9

Q ss_pred             HHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCc
Q 009871          323 MAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDH  402 (523)
Q Consensus       323 la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~  402 (523)
                      +++.+.+.....++.+|||+|||+|.++..++..+ .+|+++|+++.+++.+++++..      ..++.+...|..+.. 
T Consensus        17 ~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~~-~~v~~vEid~~~~~~l~~~~~~------~~~v~ii~~D~~~~~-   88 (258)
T PRK14896         17 VVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKRA-KKVYAIELDPRLAEFLRDDEIA------AGNVEIIEGDALKVD-   88 (258)
T ss_pred             HHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHhC-CEEEEEECCHHHHHHHHHHhcc------CCCEEEEEeccccCC-
Confidence            34555555555678899999999999999988884 5899999999999999988753      135666555544321 


Q ss_pred             chhhhhhcCCCccEEEEccccC
Q 009871          403 IEAIKEENNEGFEVILGTDVSY  424 (523)
Q Consensus       403 ~~~~~~~~~~~fD~Ii~~d~~y  424 (523)
                              ...||.|+++-..+
T Consensus        89 --------~~~~d~Vv~NlPy~  102 (258)
T PRK14896         89 --------LPEFNKVVSNLPYQ  102 (258)
T ss_pred             --------chhceEEEEcCCcc
Confidence                    13589999975544

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=98.38  E-value=1.3e-06  Score=80.11  Aligned_cols=107  Identities=16%  Similarity=0.183  Sum_probs=77.3

Q ss_pred             eEEEECCCccHHHHHHHhcCC---CEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCc
Q 009871          338 KVLELGCGCGGICSMVAAGSA---DLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGF  414 (523)
Q Consensus       338 ~VLElG~G~G~l~~~~a~~~~---~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~f  414 (523)
                      +|||+|||.|....-+.+..+   -+|.+.|.||.+++..+.|..-+.     .++.....|...++..   .+...+++
T Consensus        74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e-----~~~~afv~Dlt~~~~~---~~~~~~sv  145 (264)
T KOG2361|consen   74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE-----SRVEAFVWDLTSPSLK---EPPEEGSV  145 (264)
T ss_pred             hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch-----hhhcccceeccchhcc---CCCCcCcc
Confidence            799999999966555655433   389999999999999998876643     2333333444433211   23456899


Q ss_pred             cEEEEcccc--CCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee
Q 009871          415 EVILGTDVS--YIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIF  461 (523)
Q Consensus       415 D~Ii~~d~~--y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~  461 (523)
                      |+|++-=|+  -.++.....++.+.++|         +|||.+++....
T Consensus       146 D~it~IFvLSAi~pek~~~a~~nl~~ll---------KPGG~llfrDYg  185 (264)
T KOG2361|consen  146 DIITLIFVLSAIHPEKMQSVIKNLRTLL---------KPGGSLLFRDYG  185 (264)
T ss_pred             ceEEEEEEEeccChHHHHHHHHHHHHHh---------CCCcEEEEeecc
Confidence            999876554  34778999999999999         789999987544

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=98.37  E-value=1.7e-06  Score=84.77  Aligned_cols=88  Identities=19%  Similarity=0.201  Sum_probs=64.6

Q ss_pred             HHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcc
Q 009871          324 AAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHI  403 (523)
Q Consensus       324 a~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~  403 (523)
                      .+.+.......++.+|||||||+|.++..++..+ .+|+++|+|+.+++.+++++..++..   .++.+...|..+.   
T Consensus        25 ~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~-~~V~avEiD~~li~~l~~~~~~~~~~---~~v~ii~~Dal~~---   97 (294)
T PTZ00338         25 LDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLA-KKVIAIEIDPRMVAELKKRFQNSPLA---SKLEVIEGDALKT---   97 (294)
T ss_pred             HHHHHHhcCCCCcCEEEEecCchHHHHHHHHHhC-CcEEEEECCHHHHHHHHHHHHhcCCC---CcEEEEECCHhhh---
Confidence            4445454555678899999999999988888774 57999999999999999998876532   4566665555432   


Q ss_pred             hhhhhhcCCCccEEEEccccCC
Q 009871          404 EAIKEENNEGFEVILGTDVSYI  425 (523)
Q Consensus       404 ~~~~~~~~~~fD~Ii~~d~~y~  425 (523)
                            ....||+|+++ +.|+
T Consensus        98 ------~~~~~d~VvaN-lPY~  112 (294)
T PTZ00338         98 ------EFPYFDVCVAN-VPYQ  112 (294)
T ss_pred             ------cccccCEEEec-CCcc
Confidence                  12368998875 4554

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=98.36  E-value=1.5e-06  Score=79.00  Aligned_cols=92  Identities=16%  Similarity=0.190  Sum_probs=62.7

Q ss_pred             hhhhHHHHhhhhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhcccc-CCCcE-EEEEeeccCCc
Q 009871           60 RHYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDF-TETRV-STFVCDLISDD  137 (523)
Q Consensus        60 ~~~l~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~-~~~~v-~~~~~d~~~~~  137 (523)
                      +.-+...+.++++ ..+.+|||||||||.++.++++++|+.+-.-.|+++..+...++.... ...++ .-+..|+....
T Consensus        11 k~pIl~vL~~~l~-~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~   89 (204)
T PF06080_consen   11 KDPILEVLKQYLP-DSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPP   89 (204)
T ss_pred             HhHHHHHHHHHhC-ccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCC
Confidence            3445555556665 233369999999999999999999999999999999886555543221 11222 34567777653


Q ss_pred             cCC----CCCCCceeEEEE
Q 009871          138 LSR----QISPSSIDIVTM  152 (523)
Q Consensus       138 ~~~----~~~~~~fD~V~~  152 (523)
                      .+.    ++..++||+|+|
T Consensus        90 w~~~~~~~~~~~~~D~i~~  108 (204)
T PF06080_consen   90 WPWELPAPLSPESFDAIFC  108 (204)
T ss_pred             CccccccccCCCCcceeee
Confidence            322    234678999999

The function of this family is unknown.

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=98.35  E-value=6e-06  Score=84.93  Aligned_cols=143  Identities=14%  Similarity=0.069  Sum_probs=96.5

Q ss_pred             HHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCC
Q 009871          320 AHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGN  399 (523)
Q Consensus       320 a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~  399 (523)
                      +..|..+..+.....++.+||||=||.|.+++.+|.+ ..+|+++|+++++++.|++|++.|+..    ++.+...+-.+
T Consensus       278 ~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~-~~~V~gvEi~~~aV~~A~~NA~~n~i~----N~~f~~~~ae~  352 (432)
T COG2265         278 AEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKR-VKKVHGVEISPEAVEAAQENAAANGID----NVEFIAGDAEE  352 (432)
T ss_pred             HHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhccc-CCEEEEEecCHHHHHHHHHHHHHcCCC----cEEEEeCCHHH
Confidence            4456666666555567789999999999888888855 568999999999999999999999985    36665443322


Q ss_pred             CCcchhhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhHHHHHHHHcCCE
Q 009871          400 RDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFR  479 (523)
Q Consensus       400 ~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~~~~~~~~gf~  479 (523)
                      .   .. .......||+||.... - ...-+.+++.+.++-          |...+|++-.+  .+...-+..+.+.|++
T Consensus       353 ~---~~-~~~~~~~~d~VvvDPP-R-~G~~~~~lk~l~~~~----------p~~IvYVSCNP--~TlaRDl~~L~~~gy~  414 (432)
T COG2265         353 F---TP-AWWEGYKPDVVVVDPP-R-AGADREVLKQLAKLK----------PKRIVYVSCNP--ATLARDLAILASTGYE  414 (432)
T ss_pred             H---hh-hccccCCCCEEEECCC-C-CCCCHHHHHHHHhcC----------CCcEEEEeCCH--HHHHHHHHHHHhCCeE
Confidence            1   11 0012347899997521 1 122346677666654          56777776533  2334456677788988


Q ss_pred             EEEEcC
Q 009871          480 LVDKWP  485 (523)
Q Consensus       480 ~~~~~~  485 (523)
                      +.++-.
T Consensus       415 i~~v~~  420 (432)
T COG2265         415 IERVQP  420 (432)
T ss_pred             EEEEEE
Confidence            877643

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=98.35  E-value=7.6e-07  Score=90.80  Aligned_cols=74  Identities=12%  Similarity=0.118  Sum_probs=59.0

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCC-CcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQISPSSIDIVTM  152 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~V~~  152 (523)
                      .++.+|||+|||+|.++..++..  +.+|+|||+|+.+++.|+++.+..+ .+++|+++|+.+..   ....++||+|++
T Consensus       232 ~~~~~vLDL~cG~G~~~l~la~~--~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~---~~~~~~~D~vi~  306 (374)
T TIGR02085       232 IPVTQMWDLFCGVGGFGLHCAGP--DTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFA---TAQMSAPELVLV  306 (374)
T ss_pred             cCCCEEEEccCCccHHHHHHhhc--CCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHH---HhcCCCCCEEEE
Confidence            34679999999999999999976  4679999999999999999875443 47999999997531   111246999988

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=98.33  E-value=1.1e-06  Score=78.64  Aligned_cols=46  Identities=22%  Similarity=0.258  Sum_probs=38.4

Q ss_pred             EEEeCCHHHHHHHHhccccC----CCcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871          103 YACDFSPRAVNLVMTHKDFT----ETRVSTFVCDLISDDLSRQISPSSIDIVTM  152 (523)
Q Consensus       103 ~gvD~S~~~l~~a~~~~~~~----~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~  152 (523)
                      +|+|+|+.|++.|+++....    ..+++++++|+.++    |+++++||+|++
T Consensus         1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~l----p~~~~~fD~v~~   50 (160)
T PLN02232          1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDL----PFDDCEFDAVTM   50 (160)
T ss_pred             CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhC----CCCCCCeeEEEe
Confidence            58999999999998754311    24799999999988    788899999999

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.33  E-value=2.8e-06  Score=81.44  Aligned_cols=108  Identities=12%  Similarity=0.082  Sum_probs=81.9

Q ss_pred             HHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCC-EEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcc
Q 009871          325 AVLARNPTIVAGKKVLELGCGCGGICSMVAAGSAD-LVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHI  403 (523)
Q Consensus       325 ~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~-~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~  403 (523)
                      ..+.......+.++|||||+|+|.++..+++..+. +++..|. |++++.+++          ..++.+...|+.+.   
T Consensus        90 ~~~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~----------~~rv~~~~gd~f~~---  155 (241)
T PF00891_consen   90 DILLEAFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE----------ADRVEFVPGDFFDP---  155 (241)
T ss_dssp             HHHHHHSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH----------TTTEEEEES-TTTC---
T ss_pred             hhhhccccccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc----------ccccccccccHHhh---
Confidence            44444445556679999999999988888887544 8999999 999998887          27889988888732   


Q ss_pred             hhhhhhcCCCccEEEEccccCC--CCChHHHHHHHHHHhhccCCCCCCCCC--cEEEEEEeec
Q 009871          404 EAIKEENNEGFEVILGTDVSYI--PEAILPLFATAKELTASSNKSLREDQQ--PAFILCHIFR  462 (523)
Q Consensus       404 ~~~~~~~~~~fD~Ii~~d~~y~--~~~~~~l~~~l~~ll~~~~~~~~~~~~--g~~~l~~~~r  462 (523)
                           + +. +|+|+.+.++++  .+....+++.+...|         +||  |+++|.....
T Consensus       156 -----~-P~-~D~~~l~~vLh~~~d~~~~~iL~~~~~al---------~pg~~g~llI~e~~~  202 (241)
T PF00891_consen  156 -----L-PV-ADVYLLRHVLHDWSDEDCVKILRNAAAAL---------KPGKDGRLLIIEMVL  202 (241)
T ss_dssp             -----C-SS-ESEEEEESSGGGS-HHHHHHHHHHHHHHS---------EECTTEEEEEEEEEE
T ss_pred             -----h-cc-ccceeeehhhhhcchHHHHHHHHHHHHHh---------CCCCCCeEEEEeecc
Confidence                 2 33 999999999977  446778889999999         557  9998887764

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=98.31  E-value=8e-07  Score=88.35  Aligned_cols=109  Identities=16%  Similarity=0.196  Sum_probs=71.4

Q ss_pred             CCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhcccc-------C----CCcEEEEEeeccCCccCCCCC
Q 009871           75 GRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDF-------T----ETRVSTFVCDLISDDLSRQIS  143 (523)
Q Consensus        75 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~-------~----~~~v~~~~~d~~~~~~~~~~~  143 (523)
                      ++.+|||+|||-|..+.-+.... -..++|+|+|+..|+.|+++...       .    .-...|+.+|.....+...++
T Consensus        62 ~~~~VLDl~CGkGGDL~Kw~~~~-i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~  140 (331)
T PF03291_consen   62 PGLTVLDLCCGKGGDLQKWQKAK-IKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLP  140 (331)
T ss_dssp             TT-EEEEET-TTTTTHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSS
T ss_pred             CCCeEEEecCCCchhHHHHHhcC-CCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcc
Confidence            77899999999999988887764 34799999999999999997611       1    134667888887554433344


Q ss_pred             C--CceeEEEE--------------ccccccceeeecceEEecCCeEEEe-eCHHHHHHHHHh
Q 009871          144 P--SSIDIVTM--------------ERLTGKDQKISENFYVRGDGTRAFY-FSNDFLTSLFKE  189 (523)
Q Consensus       144 ~--~~fD~V~~--------------~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~l~~ll~~  189 (523)
                      +  ..||+|-|              ..++.....     .++++|.++-. ...+.|.+.|++
T Consensus       141 ~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~-----~Lk~GG~FIgT~~d~~~i~~~l~~  198 (331)
T PF03291_consen  141 PRSRKFDVVSCQFALHYAFESEEKARQFLKNVSS-----LLKPGGYFIGTTPDSDEIVKRLRE  198 (331)
T ss_dssp             STTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHH-----TEEEEEEEEEEEE-HHHHHCCHHC
T ss_pred             ccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHH-----hcCCCCEEEEEecCHHHHHHHHHh
Confidence            4  49999999              222222222     57788877653 356667666664

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=98.29  E-value=3.8e-06  Score=79.88  Aligned_cols=108  Identities=12%  Similarity=0.041  Sum_probs=76.9

Q ss_pred             CCCeEEEECCCccHHHHHHHhc-C-CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhh--c
Q 009871          335 AGKKVLELGCGCGGICSMVAAG-S-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEE--N  410 (523)
Q Consensus       335 ~~~~VLElG~G~G~l~~~~a~~-~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~--~  410 (523)
                      +.++|||||+++|.-++.+|.. . ..+|+.+|.+++..+.|+.|++..++.   ++|.+...+..+  .+..+...  .
T Consensus        79 ~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~---~~I~~~~G~a~e--~L~~l~~~~~~  153 (247)
T PLN02589         79 NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVA---HKIDFREGPALP--VLDQMIEDGKY  153 (247)
T ss_pred             CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCC---CceEEEeccHHH--HHHHHHhcccc
Confidence            5579999999999555555543 2 348999999999999999999998876   567665543322  12211110  1


Q ss_pred             CCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEE
Q 009871          411 NEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCH  459 (523)
Q Consensus       411 ~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~  459 (523)
                      .++||+|+.-   .+.......+..+.++|         ++||.+++-.
T Consensus       154 ~~~fD~iFiD---adK~~Y~~y~~~~l~ll---------~~GGviv~DN  190 (247)
T PLN02589        154 HGTFDFIFVD---ADKDNYINYHKRLIDLV---------KVGGVIGYDN  190 (247)
T ss_pred             CCcccEEEec---CCHHHhHHHHHHHHHhc---------CCCeEEEEcC
Confidence            2589999985   55777888888888999         6788877543

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=98.28  E-value=7.9e-06  Score=74.80  Aligned_cols=118  Identities=14%  Similarity=0.110  Sum_probs=72.7

Q ss_pred             CCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhcccc-CCCcEEEEEeeccCCccCCCCCCCceeEEEE-
Q 009871           75 GRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDF-TETRVSTFVCDLISDDLSRQISPSSIDIVTM-  152 (523)
Q Consensus        75 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~-~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~-  152 (523)
                      ...+.||.|||.|+.+..++-.. --+|.-||+++..++.|++.... .....++++..+++.    ..++++||+|++ 
T Consensus        55 ~~~~alDcGAGIGRVTk~lLl~~-f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f----~P~~~~YDlIW~Q  129 (218)
T PF05891_consen   55 KFNRALDCGAGIGRVTKGLLLPV-FDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDF----TPEEGKYDLIWIQ  129 (218)
T ss_dssp             --SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG--------TT-EEEEEEE
T ss_pred             CcceEEecccccchhHHHHHHHh-cCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhc----cCCCCcEeEEEeh
Confidence            46789999999999998775553 13599999999999999976543 234467888888865    223579999999 


Q ss_pred             -----------cccc-------ccceee--ecc-------eEEecCCeEEEeeCHHHHHHHHHhCCCcEEEEEe
Q 009871          153 -----------ERLT-------GKDQKI--SEN-------FYVRGDGTRAFYFSNDFLTSLFKENGFDVEELGL  199 (523)
Q Consensus       153 -----------~~~~-------~~~~~~--~~~-------~~~~~~g~~~~~~~~~~l~~ll~~~Gf~~~~~~~  199 (523)
                                 ..|+       .+.+.+  .+|       .+-..|+...  .+.+.++++|++||+++++...
T Consensus       130 W~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~DsSvT--Rs~~~~~~lF~~AGl~~v~~~~  201 (218)
T PF05891_consen  130 WCLGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDSSVT--RSDEHFRELFKQAGLRLVKEEK  201 (218)
T ss_dssp             S-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTTEEE--EEHHHHHHHHHHCT-EEEEEEE
T ss_pred             HhhccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccCeee--cCHHHHHHHHHHcCCEEEEecc
Confidence                       1111       222221  111       1112222222  3889999999999999876643

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>KOG2497 consensus Predicted methyltransferase [General function prediction only]

Probab=98.26  E-value=4e-07  Score=86.44  Aligned_cols=141  Identities=26%  Similarity=0.268  Sum_probs=89.9

Q ss_pred             EEEEecccccccCCCcccccchhHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHH
Q 009871          297 KIEVLSKEYQHTCRSTGLMLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQ  376 (523)
Q Consensus       297 ~i~~~~~~~~~~~~~~G~~~W~~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~  376 (523)
                      .|...+.........||+.+|++++.|..++.+++...++.+|.++|||++ +...++++.+..|...|-...+.-+...
T Consensus        52 ~v~~~~~~~~~~~~~tg~~~w~~al~L~~~l~~~~d~~~~~~v~~l~~gi~-~~~~~~a~~~~~v~~~~~~~~~~~~l~~  130 (262)
T KOG2497|consen   52 KVILQSHSLRFLLARTGLSVWESALSLEADLRDKPDLSSELTVEELGCDIA-LKHVLAARVPDCVVTLDSLRCAGLLLEE  130 (262)
T ss_pred             eeeecchHHHHHHHHhccccchHHHHHHHHHhhCcccccccchHhhccCHH-HHHHHHHhcccceecCCccCcHHHHHHH
Confidence            333333333456789999999999999999999998888999999999998 4445566655555555544444444444


Q ss_pred             HHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhc
Q 009871          377 NVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTAS  442 (523)
Q Consensus       377 n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~  442 (523)
                      +...+.......+-+.-.+.|......+   ......+|+|+++|++|. .....++.++..+|..
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~dll~~AdV~yd-~~~~~~~~~~~~lL~~  192 (262)
T KOG2497|consen  131 IILLSRDLSLEVRDSAPELNQAFLESKP---ETSQEFTDLLGGADVIYD-TELRHLLETLMTLLLR  192 (262)
T ss_pred             HHhccccccccccccchhHHHHHHhcCc---ccccchhhheeccCeeeh-hhhhHHHHHHHHHHHh
Confidence            4333322211111122222222111110   011235999999999999 8899999999998843

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=98.26  E-value=2.8e-06  Score=79.57  Aligned_cols=148  Identities=17%  Similarity=0.130  Sum_probs=92.9

Q ss_pred             HHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHH-HHHhcCCCC-------CCCceE
Q 009871          320 AHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQ-NVTANLKPP-------FLAKLI  391 (523)
Q Consensus       320 a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~-n~~~n~~~~-------~~~~v~  391 (523)
                      +..|.+++.. ....++.+||..|||.|.-...+|++|. +|+++|+|+.+++.+.+ |........       ...+|.
T Consensus        23 ~p~L~~~~~~-l~~~~~~rvLvPgCG~g~D~~~La~~G~-~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~  100 (218)
T PF05724_consen   23 NPALVEYLDS-LALKPGGRVLVPGCGKGYDMLWLAEQGH-DVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRIT  100 (218)
T ss_dssp             THHHHHHHHH-HTTSTSEEEEETTTTTSCHHHHHHHTTE-EEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEE
T ss_pred             CHHHHHHHHh-cCCCCCCeEEEeCCCChHHHHHHHHCCC-eEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceE
Confidence            5678888876 2334677999999999988888888875 79999999999998832 222111110       123455


Q ss_pred             EEeeecCCCCcchhhhhhcCCCccEEEEccc--cCCCCChHHHHHHHHHHhhccCCCCCCCCCcEE-EEEEeecC-----
Q 009871          392 TKRLEWGNRDHIEAIKEENNEGFEVILGTDV--SYIPEAILPLFATAKELTASSNKSLREDQQPAF-ILCHIFRQ-----  463 (523)
Q Consensus       392 ~~~ldw~~~~~~~~~~~~~~~~fD~Ii~~d~--~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~-~l~~~~r~-----  463 (523)
                      +...|.-+..      .-..++||+|+=.-+  -..++..+...+.+.++|         +|+|.+ +++.....     
T Consensus       101 ~~~gDfF~l~------~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll---------~p~g~~lLi~l~~~~~~~~G  165 (218)
T PF05724_consen  101 IYCGDFFELP------PEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLL---------KPGGRGLLITLEYPQGEMEG  165 (218)
T ss_dssp             EEES-TTTGG------GSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCE---------EEEEEEEEEEEES-CSCSSS
T ss_pred             EEEcccccCC------hhhcCCceEEEEecccccCCHHHHHHHHHHHHHHh---------CCCCcEEEEEEEcCCcCCCC
Confidence            5555544321      111247999995433  345788999999999999         568884 33333211     


Q ss_pred             ----CChhHHHHHHHHcCCEEEEEcC
Q 009871          464 ----VDEPSMLSAATQCGFRLVDKWP  485 (523)
Q Consensus       464 ----~~~~~~~~~~~~~gf~~~~~~~  485 (523)
                          .+.+++.+.+. .+|+++.+..
T Consensus       166 PPf~v~~~ev~~l~~-~~f~i~~l~~  190 (218)
T PF05724_consen  166 PPFSVTEEEVRELFG-PGFEIEELEE  190 (218)
T ss_dssp             SS----HHHHHHHHT-TTEEEEEEEE
T ss_pred             cCCCCCHHHHHHHhc-CCcEEEEEec
Confidence                22334445554 7899887755

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=98.25  E-value=2.2e-06  Score=83.38  Aligned_cols=73  Identities=25%  Similarity=0.267  Sum_probs=59.4

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC--CCcEEEEEeeccCCccCCCCCCCceeEEE
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISDDLSRQISPSSIDIVT  151 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~~~~~~~~~~fD~V~  151 (523)
                      -.++.|||||||+|.++...++.+ ..+|+|||.|.-+ +.|++....+  ...++++++.+++..+    |.+++|+|+
T Consensus        59 f~dK~VlDVGcGtGILS~F~akAG-A~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~L----P~eKVDiIv  132 (346)
T KOG1499|consen   59 FKDKTVLDVGCGTGILSMFAAKAG-ARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIEL----PVEKVDIIV  132 (346)
T ss_pred             cCCCEEEEcCCCccHHHHHHHHhC-cceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEEec----CccceeEEe
Confidence            358899999999999999988887 5679999998776 8888765433  3568999999988744    467899999


Q ss_pred             E
Q 009871          152 M  152 (523)
Q Consensus       152 ~  152 (523)
                      +
T Consensus       133 S  133 (346)
T KOG1499|consen  133 S  133 (346)
T ss_pred             e
Confidence            9

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=98.25  E-value=8.8e-07  Score=80.57  Aligned_cols=123  Identities=17%  Similarity=0.223  Sum_probs=91.2

Q ss_pred             cCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC---CCcEEEEEeeccCCccCCCCCCCcee
Q 009871           72 SGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT---ETRVSTFVCDLISDDLSRQISPSSID  148 (523)
Q Consensus        72 ~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~---~~~v~~~~~d~~~~~~~~~~~~~~fD  148 (523)
                      ....+.+|||.+.|-|.++...++++ ..+|+.|+.+|..+++|+-|.-..   ...++.+.+|+.+.  -..|+|.+||
T Consensus       131 ~~~~G~rVLDtC~GLGYtAi~a~~rG-A~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~--V~~~~D~sfD  207 (287)
T COG2521         131 KVKRGERVLDTCTGLGYTAIEALERG-AIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEV--VKDFDDESFD  207 (287)
T ss_pred             ccccCCEeeeeccCccHHHHHHHHcC-CcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHH--HhcCCccccc
Confidence            34678999999999999999999884 238999999999999999876321   24689999998742  2257899999


Q ss_pred             EEEE--ccccccceeeecce------EEecCCeEEEee-----------CHHHHHHHHHhCCCcEEEE
Q 009871          149 IVTM--ERLTGKDQKISENF------YVRGDGTRAFYF-----------SNDFLTSLFKENGFDVEEL  197 (523)
Q Consensus       149 ~V~~--~~~~~~~~~~~~~~------~~~~~g~~~~~~-----------~~~~l~~ll~~~Gf~~~~~  197 (523)
                      +|+-  .||...+.-....|      .++++|.+.+|.           -+..+.+.|+++||.+++.
T Consensus       208 aIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~vGF~~v~~  275 (287)
T COG2521         208 AIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLRRVGFEVVKK  275 (287)
T ss_pred             eEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHHHHHHhcCceeeee
Confidence            9998  45533332222211      467777777653           3578899999999997654

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=98.23  E-value=2.3e-05  Score=79.56  Aligned_cols=70  Identities=20%  Similarity=0.240  Sum_probs=60.5

Q ss_pred             CeEEEECCCccccHHHHHhh-CCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871           77 KDVLEVGCGAGNTIFPLIAA-YPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM  152 (523)
Q Consensus        77 ~~iLDiGcG~G~~~~~l~~~-~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~  152 (523)
                      -++|-+|||.-.+...+.+. +..  |+-+|+|+..++..............+...|+..+    .|++++||+|+.
T Consensus        50 ~~~l~lGCGNS~l~e~ly~~G~~d--I~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l----~fedESFdiVId  120 (482)
T KOG2352|consen   50 FKILQLGCGNSELSEHLYKNGFED--ITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQL----VFEDESFDIVID  120 (482)
T ss_pred             ceeEeecCCCCHHHHHHHhcCCCC--ceeccccHHHHHHHHhccccCCcceEEEEecchhc----cCCCcceeEEEe
Confidence            38999999999999888877 334  99999999999998876545557789999999988    788999999987

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=98.22  E-value=1.9e-05  Score=73.95  Aligned_cols=124  Identities=11%  Similarity=0.057  Sum_probs=81.2

Q ss_pred             hHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCC-----------CCC
Q 009871          319 SAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKP-----------PFL  387 (523)
Q Consensus       319 ~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~-----------~~~  387 (523)
                      ....|.+++.... ..++.+||..|||.|.-...+|.+|.. |+++|+|+.+++.+.+   .|+..           ...
T Consensus        28 pnp~L~~~~~~l~-~~~~~rvLvPgCGkg~D~~~LA~~G~~-V~GvDlS~~Ai~~~~~---e~~~~~~~~~~~~~~~~~~  102 (226)
T PRK13256         28 PNEFLVKHFSKLN-INDSSVCLIPMCGCSIDMLFFLSKGVK-VIGIELSEKAVLSFFS---QNTINYEVIHGNDYKLYKG  102 (226)
T ss_pred             CCHHHHHHHHhcC-CCCCCeEEEeCCCChHHHHHHHhCCCc-EEEEecCHHHHHHHHH---HcCCCcceecccccceecc
Confidence            3455666665433 236789999999999888889888764 9999999999998754   12111           011


Q ss_pred             CceEEEeeecCCCCcchhhhhhcCCCccEEEEcc--ccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEe
Q 009871          388 AKLITKRLEWGNRDHIEAIKEENNEGFEVILGTD--VSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHI  460 (523)
Q Consensus       388 ~~v~~~~ldw~~~~~~~~~~~~~~~~fD~Ii~~d--~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~  460 (523)
                      ..+.+...|+-+....    .-..++||+|+-.-  +-..++.....++.+.++|         +|+|.+++...
T Consensus       103 ~~i~~~~gD~f~l~~~----~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL---------~pgg~llll~~  164 (226)
T PRK13256        103 DDIEIYVADIFNLPKI----ANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVC---------SNNTQILLLVM  164 (226)
T ss_pred             CceEEEEccCcCCCcc----ccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHh---------CCCcEEEEEEE
Confidence            3455555554432110    00125799987443  3345778889999999999         66777665443

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=98.21  E-value=1.7e-06  Score=78.65  Aligned_cols=77  Identities=17%  Similarity=0.208  Sum_probs=59.1

Q ss_pred             cCCCCCeEEEECCCccccHHHHHhhCCCCE---------EEEEeCCHHHHHHHHhccccC--CCcEEEEEeeccCCccCC
Q 009871           72 SGAGRKDVLEVGCGAGNTIFPLIAAYPDVF---------VYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISDDLSR  140 (523)
Q Consensus        72 ~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~---------v~gvD~S~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~~~~  140 (523)
                      ...++..|||-=||+|.++...+...++..         ++|+|+++++++.|+++....  ...+.+.+.|+.++    
T Consensus        25 ~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l----  100 (179)
T PF01170_consen   25 GWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDAREL----  100 (179)
T ss_dssp             T--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGG----
T ss_pred             CCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhc----
Confidence            335678999999999999987776655555         899999999999999987532  35689999999987    


Q ss_pred             CCCCCceeEEEE
Q 009871          141 QISPSSIDIVTM  152 (523)
Q Consensus       141 ~~~~~~fD~V~~  152 (523)
                      ++.++++|+|++
T Consensus       101 ~~~~~~~d~Ivt  112 (179)
T PF01170_consen  101 PLPDGSVDAIVT  112 (179)
T ss_dssp             GGTTSBSCEEEE
T ss_pred             ccccCCCCEEEE
Confidence            566789999999

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=98.18  E-value=1.3e-05  Score=70.84  Aligned_cols=115  Identities=18%  Similarity=0.172  Sum_probs=72.1

Q ss_pred             CeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCC-cc
Q 009871          337 KKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG-FE  415 (523)
Q Consensus       337 ~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~-fD  415 (523)
                      ..|+|+.||.|+-+..+|..+ .+|+++|+++..++.++.|++.-++.   .++.+...||.+..  .   .+.... ||
T Consensus         1 ~~vlD~fcG~GGNtIqFA~~~-~~Viaidid~~~~~~a~hNa~vYGv~---~~I~~i~gD~~~~~--~---~~~~~~~~D   71 (163)
T PF09445_consen    1 TTVLDAFCGVGGNTIQFARTF-DRVIAIDIDPERLECAKHNAEVYGVA---DNIDFICGDFFELL--K---RLKSNKIFD   71 (163)
T ss_dssp             SEEEETT-TTSHHHHHHHHTT--EEEEEES-HHHHHHHHHHHHHTT-G---GGEEEEES-HHHHG--G---GB------S
T ss_pred             CEEEEeccCcCHHHHHHHHhC-CeEEEEECCHHHHHHHHHHHHHcCCC---CcEEEEeCCHHHHH--h---hcccccccc
Confidence            369999999999999999885 57999999999999999999998875   68999988886531  1   121122 89


Q ss_pred             EEEEccc----------cCCC------CChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhHHHHHH
Q 009871          416 VILGTDV----------SYIP------EAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAA  473 (523)
Q Consensus       416 ~Ii~~d~----------~y~~------~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~~~~~  473 (523)
                      +|+.+..          .|+.      -.+..+++...++.          +.   ++.+.+|+.+..++.+..
T Consensus        72 ~vFlSPPWGGp~Y~~~~~fdL~~~~~p~~~~~l~~~~~~~t----------~n---v~l~LPRn~dl~ql~~~~  132 (163)
T PF09445_consen   72 VVFLSPPWGGPSYSKKDVFDLEKSMQPFNLEDLLKAARKIT----------PN---VVLFLPRNSDLNQLSQLT  132 (163)
T ss_dssp             EEEE---BSSGGGGGSSSB-TTTSSSS--HHHHHHHHHHH-----------S----EEEEEETTB-HHHHHHT-
T ss_pred             EEEECCCCCCccccccCccCHHHccCCCCHHHHHHHHHhhC----------CC---EEEEeCCCCCHHHHHHHh
Confidence            9997742          2222      14555666655554          12   234467888887776664

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=98.17  E-value=8.2e-06  Score=77.36  Aligned_cols=91  Identities=18%  Similarity=0.181  Sum_probs=68.4

Q ss_pred             ccccchhhhHHHHhhhhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeecc
Q 009871           55 RFFKDRHYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLI  134 (523)
Q Consensus        55 ~f~~~~~~l~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~  134 (523)
                      +|..+...+ +.+-+.....++..|||||+|.|.++..|+++.  ..|++|++++.++...++... ...+++.+++|+.
T Consensus        11 nFL~d~~v~-~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~--~~v~aiEiD~~l~~~L~~~~~-~~~n~~vi~~DaL   86 (259)
T COG0030          11 NFLIDKNVI-DKIVEAANISPGDNVLEIGPGLGALTEPLLERA--ARVTAIEIDRRLAEVLKERFA-PYDNLTVINGDAL   86 (259)
T ss_pred             ccccCHHHH-HHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhc--CeEEEEEeCHHHHHHHHHhcc-cccceEEEeCchh
Confidence            455444443 333344444568899999999999999999994  559999999999999998764 3478999999999


Q ss_pred             CCccCCCCCCCceeEEEE
Q 009871          135 SDDLSRQISPSSIDIVTM  152 (523)
Q Consensus       135 ~~~~~~~~~~~~fD~V~~  152 (523)
                      ..+++.-.   .++.|++
T Consensus        87 k~d~~~l~---~~~~vVa  101 (259)
T COG0030          87 KFDFPSLA---QPYKVVA  101 (259)
T ss_pred             cCcchhhc---CCCEEEE
Confidence            88554211   5777777

>TIGR00417 speE spermidine synthase

Probab=98.17  E-value=4.2e-06  Score=81.53  Aligned_cols=76  Identities=17%  Similarity=0.215  Sum_probs=58.5

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhcccc-----CCCcEEEEEeeccCCccCCCCCCCcee
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDF-----TETRVSTFVCDLISDDLSRQISPSSID  148 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~-----~~~~v~~~~~d~~~~~~~~~~~~~~fD  148 (523)
                      +.+.+||+||||+|..+..+++..+..+|+++|+++.+++.|+++...     ..++++++.+|.... +  ...+++||
T Consensus        71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~-l--~~~~~~yD  147 (270)
T TIGR00417        71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKF-L--ADTENTFD  147 (270)
T ss_pred             CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHH-H--HhCCCCcc
Confidence            456699999999999998888775556799999999999999986421     235788888887531 0  11246899


Q ss_pred             EEEE
Q 009871          149 IVTM  152 (523)
Q Consensus       149 ~V~~  152 (523)
                      +|++
T Consensus       148 vIi~  151 (270)
T TIGR00417       148 VIIV  151 (270)
T ss_pred             EEEE
Confidence            9998

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]

Probab=98.17  E-value=9.4e-06  Score=77.49  Aligned_cols=111  Identities=16%  Similarity=0.176  Sum_probs=78.0

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC-------CCcEEEEEeeccCCccCC--CCCC
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT-------ETRVSTFVCDLISDDLSR--QISP  144 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~-------~~~v~~~~~d~~~~~~~~--~~~~  144 (523)
                      .++..++|+|||-|..++.+-+.+- ..++|+||++..|++|+++....       .-.+.|+.+|.....+..  ++++
T Consensus       116 ~~~~~~~~LgCGKGGDLlKw~kAgI-~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~d  194 (389)
T KOG1975|consen  116 KRGDDVLDLGCGKGGDLLKWDKAGI-GEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKD  194 (389)
T ss_pred             ccccccceeccCCcccHhHhhhhcc-cceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCC
Confidence            4678899999999999988876642 35999999999999999875321       124789999987643321  2355


Q ss_pred             CceeEEEE--------------ccccccceeeecceEEecCCeEEEee-CHHHHHHHHHhC
Q 009871          145 SSIDIVTM--------------ERLTGKDQKISENFYVRGDGTRAFYF-SNDFLTSLFKEN  190 (523)
Q Consensus       145 ~~fD~V~~--------------~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~l~~ll~~~  190 (523)
                      .+||+|-|              ..++.....     .++|+|.++-.. ..+.|..-|+++
T Consensus       195 p~fDivScQF~~HYaFetee~ar~~l~Nva~-----~LkpGG~FIgTiPdsd~Ii~rlr~~  250 (389)
T KOG1975|consen  195 PRFDIVSCQFAFHYAFETEESARIALRNVAK-----CLKPGGVFIGTIPDSDVIIKRLRAG  250 (389)
T ss_pred             CCcceeeeeeeEeeeeccHHHHHHHHHHHHh-----hcCCCcEEEEecCcHHHHHHHHHhc
Confidence            66999988              122222222     678888877533 566778888765

>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=98.16  E-value=8.4e-06  Score=76.09  Aligned_cols=73  Identities=27%  Similarity=0.303  Sum_probs=62.5

Q ss_pred             cCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCC--CcEEEEEeeccCCccCCCCCCCceeE
Q 009871           72 SGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQISPSSIDI  149 (523)
Q Consensus        72 ~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~  149 (523)
                      +..++..|||||-|||.++..|++.  +.+|+|+++++.|+....++.+...  ..++.+++|+...++|      .||+
T Consensus        55 ~~k~tD~VLEvGPGTGnLT~~lLe~--~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~P------~fd~  126 (315)
T KOG0820|consen   55 DLKPTDVVLEVGPGTGNLTVKLLEA--GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLP------RFDG  126 (315)
T ss_pred             CCCCCCEEEEeCCCCCHHHHHHHHh--cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCCc------ccce
Confidence            3467889999999999999999999  5569999999999999988775443  7899999999987543      4999


Q ss_pred             EEE
Q 009871          150 VTM  152 (523)
Q Consensus       150 V~~  152 (523)
                      +++
T Consensus       127 cVs  129 (315)
T KOG0820|consen  127 CVS  129 (315)
T ss_pred             eec
Confidence            988

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=98.11  E-value=2e-05  Score=71.49  Aligned_cols=116  Identities=14%  Similarity=0.246  Sum_probs=69.5

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEEE-
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM-  152 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~-  152 (523)
                      ++...|-|+|||.+.++..+..   ..+|+..|+-+.       +     +  ....+|+.+.    |++++++|++++ 
T Consensus        71 ~~~~viaD~GCGdA~la~~~~~---~~~V~SfDLva~-------n-----~--~Vtacdia~v----PL~~~svDv~Vfc  129 (219)
T PF05148_consen   71 PKSLVIADFGCGDAKLAKAVPN---KHKVHSFDLVAP-------N-----P--RVTACDIANV----PLEDESVDVAVFC  129 (219)
T ss_dssp             -TTS-EEEES-TT-HHHHH--S------EEEEESS-S-------S-----T--TEEES-TTS-----S--TT-EEEEEEE
T ss_pred             CCCEEEEECCCchHHHHHhccc---CceEEEeeccCC-------C-----C--CEEEecCccC----cCCCCceeEEEEE
Confidence            4567899999999999855432   356999998553       1     2  3578999888    889999999988 


Q ss_pred             --------ccccccceeeecceEEecCCeEEE------eeCHHHHHHHHHhCCCcEEEEEeEeeeeeecccCccceeEEE
Q 009871          153 --------ERLTGKDQKISENFYVRGDGTRAF------YFSNDFLTSLFKENGFDVEELGLCCKQVENRARELVMNRRWV  218 (523)
Q Consensus       153 --------~~~~~~~~~~~~~~~~~~~g~~~~------~~~~~~l~~ll~~~Gf~~~~~~~~~~~~~~~~~~~~~~r~~~  218 (523)
                              ..|+.+..+     .++++|.+..      +-..+...+.++..||+.......             +..++
T Consensus       130 LSLMGTn~~~fi~EA~R-----vLK~~G~L~IAEV~SRf~~~~~F~~~~~~~GF~~~~~d~~-------------n~~F~  191 (219)
T PF05148_consen  130 LSLMGTNWPDFIREANR-----VLKPGGILKIAEVKSRFENVKQFIKALKKLGFKLKSKDES-------------NKHFV  191 (219)
T ss_dssp             S---SS-HHHHHHHHHH-----HEEEEEEEEEEEEGGG-S-HHHHHHHHHCTTEEEEEEE---------------STTEE
T ss_pred             hhhhCCCcHHHHHHHHh-----eeccCcEEEEEEecccCcCHHHHHHHHHHCCCeEEecccC-------------CCeEE
Confidence                    333344444     6777887764      346788899999999997643211             13466


Q ss_pred             EEEEEecCCC
Q 009871          219 QAVFCSSGGA  228 (523)
Q Consensus       219 ~~~~~~~~~~  228 (523)
                      -..|+|....
T Consensus       192 ~f~F~K~~~~  201 (219)
T PF05148_consen  192 LFEFKKIRKK  201 (219)
T ss_dssp             EEEEEE-SSS
T ss_pred             EEEEEEcCcc
Confidence            6777777643

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=98.11  E-value=3.6e-05  Score=69.78  Aligned_cols=132  Identities=15%  Similarity=0.216  Sum_probs=82.0

Q ss_pred             cccchhHHH--HHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceE
Q 009871          314 LMLWESAHL--MAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLI  391 (523)
Q Consensus       314 ~~~W~~a~~--la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~  391 (523)
                      ...||--.+  +.+||...+   ++..|-|+|||-+.++..+.  ...+|...|+-+           .|      ..|.
T Consensus        52 v~~WP~nPvd~iI~~l~~~~---~~~viaD~GCGdA~la~~~~--~~~~V~SfDLva-----------~n------~~Vt  109 (219)
T PF05148_consen   52 VKKWPVNPVDVIIEWLKKRP---KSLVIADFGCGDAKLAKAVP--NKHKVHSFDLVA-----------PN------PRVT  109 (219)
T ss_dssp             HCTSSS-HHHHHHHHHCTS----TTS-EEEES-TT-HHHHH----S---EEEEESS------------SS------TTEE
T ss_pred             HhcCCCCcHHHHHHHHHhcC---CCEEEEECCCchHHHHHhcc--cCceEEEeeccC-----------CC------CCEE
Confidence            357887765  778887655   56799999999986653322  223699999843           11      2233


Q ss_pred             EEeeecCCCCcchhhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecC-CChhHHH
Q 009871          392 TKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ-VDEPSML  470 (523)
Q Consensus       392 ~~~ldw~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~-~~~~~~~  470 (523)
                      +  .|....       ++++++.|++|.+=.+. -.++..++....++|         +++|.++++...-+ .+...|.
T Consensus       110 a--cdia~v-------PL~~~svDv~VfcLSLM-GTn~~~fi~EA~RvL---------K~~G~L~IAEV~SRf~~~~~F~  170 (219)
T PF05148_consen  110 A--CDIANV-------PLEDESVDVAVFCLSLM-GTNWPDFIREANRVL---------KPGGILKIAEVKSRFENVKQFI  170 (219)
T ss_dssp             E--S-TTS--------S--TT-EEEEEEES----SS-HHHHHHHHHHHE---------EEEEEEEEEEEGGG-S-HHHHH
T ss_pred             E--ecCccC-------cCCCCceeEEEEEhhhh-CCCcHHHHHHHHhee---------ccCcEEEEEEecccCcCHHHHH
Confidence            2  222221       56678999999873333 456999999999999         67999999987755 4567899


Q ss_pred             HHHHHcCCEEEEEcCC
Q 009871          471 SAATQCGFRLVDKWPS  486 (523)
Q Consensus       471 ~~~~~~gf~~~~~~~~  486 (523)
                      +.+++.||++......
T Consensus       171 ~~~~~~GF~~~~~d~~  186 (219)
T PF05148_consen  171 KALKKLGFKLKSKDES  186 (219)
T ss_dssp             HHHHCTTEEEEEEE--
T ss_pred             HHHHHCCCeEEecccC
Confidence            9999999999886543

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=98.09  E-value=1.3e-05  Score=73.48  Aligned_cols=131  Identities=11%  Similarity=0.075  Sum_probs=84.2

Q ss_pred             CCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCc
Q 009871          335 AGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGF  414 (523)
Q Consensus       335 ~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~f  414 (523)
                      ...++||.|||.|.++-.++.....+|-++|..+..++.|++.+..+..    ....+...      .+....+ .+.+|
T Consensus        55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~----~v~~~~~~------gLQ~f~P-~~~~Y  123 (218)
T PF05891_consen   55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNP----RVGEFYCV------GLQDFTP-EEGKY  123 (218)
T ss_dssp             --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGC----CEEEEEES-------GGG-----TT-E
T ss_pred             CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCC----CcceEEec------CHhhccC-CCCcE
Confidence            4569999999999999877777788999999999999999876544111    11111111      1111111 13599


Q ss_pred             cEEEEccccCC--CCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecC--------C------ChhHHHHHHHHcCC
Q 009871          415 EVILGTDVSYI--PEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ--------V------DEPSMLSAATQCGF  478 (523)
Q Consensus       415 D~Ii~~d~~y~--~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~--------~------~~~~~~~~~~~~gf  478 (523)
                      |+|+.-+|+-+  .+++-.+++.++..|         +|+|.+++=...-.        .      +...+.+.++++|+
T Consensus       124 DlIW~QW~lghLTD~dlv~fL~RCk~~L---------~~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl  194 (218)
T PF05891_consen  124 DLIWIQWCLGHLTDEDLVAFLKRCKQAL---------KPNGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGL  194 (218)
T ss_dssp             EEEEEES-GGGS-HHHHHHHHHHHHHHE---------EEEEEEEEEEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-
T ss_pred             eEEEehHhhccCCHHHHHHHHHHHHHhC---------cCCcEEEEEecCCCCCCcccCCccCeeecCHHHHHHHHHHcCC
Confidence            99999999876  347888899999999         56888886322211        1      23568899999999


Q ss_pred             EEEEEcC
Q 009871          479 RLVDKWP  485 (523)
Q Consensus       479 ~~~~~~~  485 (523)
                      ++.+.-.
T Consensus       195 ~~v~~~~  201 (218)
T PF05891_consen  195 RLVKEEK  201 (218)
T ss_dssp             EEEEEEE
T ss_pred             EEEEecc
Confidence            9987644

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=98.09  E-value=1.2e-05  Score=73.40  Aligned_cols=134  Identities=17%  Similarity=0.187  Sum_probs=93.1

Q ss_pred             CCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCC
Q 009871          334 VAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG  413 (523)
Q Consensus       334 ~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~  413 (523)
                      .+|.+|||-..|.|..++.++++|+.+|+-++.+|.+|++|..|--..++..  ..+.+.   .|+  ..+-+.++.+.+
T Consensus       133 ~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~--~~i~ii---lGD--~~e~V~~~~D~s  205 (287)
T COG2521         133 KRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFE--IAIKII---LGD--AYEVVKDFDDES  205 (287)
T ss_pred             ccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccc--cccEEe---ccc--HHHHHhcCCccc
Confidence            4789999999999988888888999899999999999999986644433321  123332   232  233445677889


Q ss_pred             ccEEEEccccCCCC---ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee-----cCCCh-hHHHHHHHHcCCEEEEE
Q 009871          414 FEVILGTDVSYIPE---AILPLFATAKELTASSNKSLREDQQPAFILCHIF-----RQVDE-PSMLSAATQCGFRLVDK  483 (523)
Q Consensus       414 fD~Ii~~d~~y~~~---~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~-----r~~~~-~~~~~~~~~~gf~~~~~  483 (523)
                      ||+||--..-+...   .-..+-+.+.++|         ++||.++--...     |..+. ..+.+.+++.||.+...
T Consensus       206 fDaIiHDPPRfS~AgeLYseefY~El~RiL---------krgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~vGF~~v~~  275 (287)
T COG2521         206 FDAIIHDPPRFSLAGELYSEEFYRELYRIL---------KRGGRLFHYVGNPGKRYRGLDLPKGVAERLRRVGFEVVKK  275 (287)
T ss_pred             cceEeeCCCccchhhhHhHHHHHHHHHHHc---------CcCCcEEEEeCCCCcccccCChhHHHHHHHHhcCceeeee
Confidence            99999644333211   3456788889999         668877642221     33444 35788999999996554

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=98.09  E-value=1.2e-05  Score=75.33  Aligned_cols=64  Identities=23%  Similarity=0.311  Sum_probs=49.8

Q ss_pred             CCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871           75 GRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM  152 (523)
Q Consensus        75 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~  152 (523)
                      ...++||||+|.|..+..++..+..  |++.|+|+.|....+++.        |.+.|..+.    .-.+.+||+|.|
T Consensus        94 ~~~~lLDlGAGdG~VT~~l~~~f~~--v~aTE~S~~Mr~rL~~kg--------~~vl~~~~w----~~~~~~fDvIsc  157 (265)
T PF05219_consen   94 KDKSLLDLGAGDGEVTERLAPLFKE--VYATEASPPMRWRLSKKG--------FTVLDIDDW----QQTDFKFDVISC  157 (265)
T ss_pred             cCCceEEecCCCcHHHHHHHhhcce--EEeecCCHHHHHHHHhCC--------CeEEehhhh----hccCCceEEEee
Confidence            4678999999999999999998876  999999999998887752        223344332    112568999999

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>PLN02823 spermine synthase

Probab=98.08  E-value=3.6e-05  Score=76.72  Aligned_cols=134  Identities=21%  Similarity=0.245  Sum_probs=83.3

Q ss_pred             CCCeEEEECCCccHHHHHHHhc-CCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCC
Q 009871          335 AGKKVLELGCGCGGICSMVAAG-SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG  413 (523)
Q Consensus       335 ~~~~VLElG~G~G~l~~~~a~~-~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~  413 (523)
                      ..++||.||+|.|.++..+++. ...+|+++|+++++++.+++....+.......++++...|-.     .-+ ....++
T Consensus       103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~-----~~L-~~~~~~  176 (336)
T PLN02823        103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDAR-----AEL-EKRDEK  176 (336)
T ss_pred             CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhH-----HHH-hhCCCC
Confidence            4479999999999888777775 457899999999999999998765532222356655543211     111 123468


Q ss_pred             ccEEEEccccCCCC--------ChHHHHH-HHHHHhhccCCCCCCCCCcEEEEEEeecCC--C---hhHHHHHHHHcCCE
Q 009871          414 FEVILGTDVSYIPE--------AILPLFA-TAKELTASSNKSLREDQQPAFILCHIFRQV--D---EPSMLSAATQCGFR  479 (523)
Q Consensus       414 fD~Ii~~d~~y~~~--------~~~~l~~-~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~--~---~~~~~~~~~~~gf~  479 (523)
                      ||+|+. |+. ++.        .-..+++ .+++.|         +|+|.+++-......  .   ...+...+++. |.
T Consensus       177 yDvIi~-D~~-dp~~~~~~~~Lyt~eF~~~~~~~~L---------~p~Gvlv~q~~s~~~~~~~~~~~~i~~tl~~v-F~  244 (336)
T PLN02823        177 FDVIIG-DLA-DPVEGGPCYQLYTKSFYERIVKPKL---------NPGGIFVTQAGPAGILTHKEVFSSIYNTLRQV-FK  244 (336)
T ss_pred             ccEEEe-cCC-CccccCcchhhccHHHHHHHHHHhc---------CCCcEEEEeccCcchhccHHHHHHHHHHHHHh-CC
Confidence            999997 432 221        1235676 788999         679987764332111  1   12345555554 44


Q ss_pred             EEEEcCC
Q 009871          480 LVDKWPS  486 (523)
Q Consensus       480 ~~~~~~~  486 (523)
                      ....+..
T Consensus       245 ~v~~y~~  251 (336)
T PLN02823        245 YVVPYTA  251 (336)
T ss_pred             CEEEEEe
Confidence            4444443

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=98.08  E-value=2.6e-05  Score=70.79  Aligned_cols=116  Identities=22%  Similarity=0.219  Sum_probs=74.1

Q ss_pred             eEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhcccc-CCCcEEEEEeeccCCccCCCCCCCceeEEEEcccc
Q 009871           78 DVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDF-TETRVSTFVCDLISDDLSRQISPSSIDIVTMERLT  156 (523)
Q Consensus        78 ~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~-~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~~~~  156 (523)
                      +++|||+|.|.-+..|+=.+|+.+|+-+|.+..-+...+.-... .-.++++++..+++     +....+||+|++..+.
T Consensus        51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~-----~~~~~~fd~v~aRAv~  125 (184)
T PF02527_consen   51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEE-----PEYRESFDVVTARAVA  125 (184)
T ss_dssp             EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHH-----TTTTT-EEEEEEESSS
T ss_pred             eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecc-----cccCCCccEEEeehhc
Confidence            89999999999999999999999999999999988777664322 23579999999986     1346789999992221


Q ss_pred             ccceeeec--ceEEecCCeEEEee---CHHH---HHHHHHhCCCcEEEEEe
Q 009871          157 GKDQKISE--NFYVRGDGTRAFYF---SNDF---LTSLFKENGFDVEELGL  199 (523)
Q Consensus       157 ~~~~~~~~--~~~~~~~g~~~~~~---~~~~---l~~ll~~~Gf~~~~~~~  199 (523)
                       +...+.+  .-+++++|.++.+-   ..+|   ....+...|.+...+..
T Consensus       126 -~l~~l~~~~~~~l~~~G~~l~~KG~~~~~El~~~~~~~~~~~~~~~~v~~  175 (184)
T PF02527_consen  126 -PLDKLLELARPLLKPGGRLLAYKGPDAEEELEEAKKAWKKLGLKVLSVPE  175 (184)
T ss_dssp             -SHHHHHHHHGGGEEEEEEEEEEESS--HHHHHTHHHHHHCCCEEEEEEEE
T ss_pred             -CHHHHHHHHHHhcCCCCEEEEEcCCChHHHHHHHHhHHHHhCCEEeeecc
Confidence             1100000  01345555555543   2333   45556666666655543

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=98.08  E-value=1.8e-05  Score=72.64  Aligned_cols=47  Identities=15%  Similarity=0.319  Sum_probs=42.4

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccc
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKD  120 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~  120 (523)
                      ..+..+|||||-+|.++..+++.+-...|+|+||++..|+.|+++..
T Consensus        57 f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r  103 (288)
T KOG2899|consen   57 FEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIR  103 (288)
T ss_pred             cCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhcc
Confidence            35678999999999999999999866789999999999999999764

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=98.07  E-value=5.6e-06  Score=76.67  Aligned_cols=79  Identities=20%  Similarity=0.286  Sum_probs=60.7

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCC-CCEEEEEeCCHHHHHHHHhccccC--CCcEEEEEeeccCC--ccCCCCCCCcee
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYP-DVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISD--DLSRQISPSSID  148 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~-~~~v~gvD~S~~~l~~a~~~~~~~--~~~v~~~~~d~~~~--~~~~~~~~~~fD  148 (523)
                      ...++|||||||+|..+..|++..| +++|+.+|++++..+.|+++....  ..+++++.+|+.+.  .+....+.++||
T Consensus        44 ~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD  123 (205)
T PF01596_consen   44 TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFD  123 (205)
T ss_dssp             HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEE
T ss_pred             cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCcee
Confidence            4678999999999999999998865 689999999999999999976433  36899999998642  011111246899


Q ss_pred             EEEE
Q 009871          149 IVTM  152 (523)
Q Consensus       149 ~V~~  152 (523)
                      +||.
T Consensus       124 ~VFi  127 (205)
T PF01596_consen  124 FVFI  127 (205)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9987

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=98.06  E-value=3.8e-05  Score=66.54  Aligned_cols=113  Identities=15%  Similarity=0.085  Sum_probs=76.8

Q ss_pred             cchhHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCC--CEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEE
Q 009871          316 LWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSA--DLVVATDGDSIALDLLAQNVTANLKPPFLAKLITK  393 (523)
Q Consensus       316 ~W~~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~--~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~  393 (523)
                      +-|++-.+|+.+....+...|..|||+|.|||.++-.+.++|.  ..++++++|++.+..+.+....-         .+.
T Consensus        29 I~PsSs~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~---------~ii   99 (194)
T COG3963          29 ILPSSSILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGV---------NII   99 (194)
T ss_pred             ecCCcHHHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCc---------ccc
Confidence            4466777888888877777899999999999999999998864  48999999999988876643321         111


Q ss_pred             eeecCCCCcch-hhhhhcCCCccEEEEccccCCC--CChHHHHHHHHHHh
Q 009871          394 RLEWGNRDHIE-AIKEENNEGFEVILGTDVSYIP--EAILPLFATAKELT  440 (523)
Q Consensus       394 ~ldw~~~~~~~-~~~~~~~~~fD~Ii~~d~~y~~--~~~~~l~~~l~~ll  440 (523)
                      ..|-.   .+. .+.......||.|+++=.+-..  ..--.+++.+...|
T Consensus       100 ~gda~---~l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl  146 (194)
T COG3963         100 NGDAF---DLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRL  146 (194)
T ss_pred             ccchh---hHHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhc
Confidence            11111   111 1223445689999998555443  33445566666666

>PLN02476 O-methyltransferase

Probab=98.05  E-value=5.2e-06  Score=80.03  Aligned_cols=79  Identities=15%  Similarity=0.169  Sum_probs=61.7

Q ss_pred             CCCCCeEEEECCCccccHHHHHhhC-CCCEEEEEeCCHHHHHHHHhccccC--CCcEEEEEeeccCCccCC---CCCCCc
Q 009871           73 GAGRKDVLEVGCGAGNTIFPLIAAY-PDVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISDDLSR---QISPSS  146 (523)
Q Consensus        73 ~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~v~gvD~S~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~~~~---~~~~~~  146 (523)
                      ..+.++|||||||+|..+..++... ++.+|+++|.++++++.|+++.+..  ..+++++.+|+.+. ++.   ....++
T Consensus       116 ~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~-L~~l~~~~~~~~  194 (278)
T PLN02476        116 ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAES-LKSMIQNGEGSS  194 (278)
T ss_pred             hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHH-HHHHHhcccCCC
Confidence            3568899999999999999999874 4678999999999999999987543  35799999998642 111   012368


Q ss_pred             eeEEEE
Q 009871          147 IDIVTM  152 (523)
Q Consensus       147 fD~V~~  152 (523)
                      ||+||.
T Consensus       195 FD~VFI  200 (278)
T PLN02476        195 YDFAFV  200 (278)
T ss_pred             CCEEEE
Confidence            999976

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=98.04  E-value=3.2e-06  Score=74.57  Aligned_cols=71  Identities=17%  Similarity=0.349  Sum_probs=52.2

Q ss_pred             eEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC--CCcEEEEEeeccCCccCCCCCCCc-eeEEEE
Q 009871           78 DVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISDDLSRQISPSS-IDIVTM  152 (523)
Q Consensus        78 ~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~~~~~~~~~~-fD~V~~  152 (523)
                      .|+|+.||.|..+..+++.+.  +|+|||+++..++.|+.++..-  ..++.++++|+.+.-  ..+..+. ||+|++
T Consensus         2 ~vlD~fcG~GGNtIqFA~~~~--~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~--~~~~~~~~~D~vFl   75 (163)
T PF09445_consen    2 TVLDAFCGVGGNTIQFARTFD--RVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELL--KRLKSNKIFDVVFL   75 (163)
T ss_dssp             EEEETT-TTSHHHHHHHHTT---EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHG--GGB------SEEEE
T ss_pred             EEEEeccCcCHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHH--hhccccccccEEEE
Confidence            699999999999999999964  4999999999999999987533  468999999997641  1122222 899998

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=98.03  E-value=9.5e-06  Score=74.57  Aligned_cols=74  Identities=24%  Similarity=0.281  Sum_probs=56.7

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC--CCcEEEEEeeccCCccCCCCCCCceeEEE
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISDDLSRQISPSSIDIVT  151 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~~~~~~~~~~fD~V~  151 (523)
                      .++..|||.-||.|.++..+++..+...|+|+|++|.+++.++++...+  ..++..+++|+...    . +.+.||.|+
T Consensus       100 ~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~----~-~~~~~drvi  174 (200)
T PF02475_consen  100 KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREF----L-PEGKFDRVI  174 (200)
T ss_dssp             -TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG--------TT-EEEEE
T ss_pred             CcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHh----c-CccccCEEE
Confidence            5688999999999999999999766788999999999999999987543  35689999999865    2 278999999


Q ss_pred             E
Q 009871          152 M  152 (523)
Q Consensus       152 ~  152 (523)
                      +
T Consensus       175 m  175 (200)
T PF02475_consen  175 M  175 (200)
T ss_dssp             E
T ss_pred             E
Confidence            9

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=98.03  E-value=6.5e-06  Score=83.20  Aligned_cols=57  Identities=23%  Similarity=0.294  Sum_probs=49.4

Q ss_pred             CeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCC-CcEEEEEeeccC
Q 009871           77 KDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLIS  135 (523)
Q Consensus        77 ~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~-~~v~~~~~d~~~  135 (523)
                      .+|||+|||+|.++..|++...  +|+|||+|+.|++.|+++...++ .+++++++|+.+
T Consensus       199 ~~vlDl~~G~G~~sl~la~~~~--~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~  256 (353)
T TIGR02143       199 GDLLELYCGNGNFSLALAQNFR--RVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEE  256 (353)
T ss_pred             CcEEEEeccccHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHH
Confidence            4799999999999999988853  69999999999999999875443 479999999975

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>TIGR00095 RNA methyltransferase, RsmD family

Probab=98.03  E-value=8e-06  Score=74.94  Aligned_cols=76  Identities=8%  Similarity=0.033  Sum_probs=57.7

Q ss_pred             CCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCC--CcEEEEEeeccCCccCCCCCC-CceeEEE
Q 009871           75 GRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQISP-SSIDIVT  151 (523)
Q Consensus        75 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~-~~fD~V~  151 (523)
                      .+.+|||++||+|.++..++.++. .+|++||.++.+++.++++.....  .+++++++|+.+. +...... ..||+|+
T Consensus        49 ~g~~vLDLfaGsG~lglea~srga-~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~-l~~~~~~~~~~dvv~  126 (189)
T TIGR00095        49 QGAHLLDVFAGSGLLGEEALSRGA-KVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRA-LKFLAKKPTFDNVIY  126 (189)
T ss_pred             CCCEEEEecCCCcHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHH-HHHhhccCCCceEEE
Confidence            578999999999999999999864 479999999999999999875432  4688999999542 1101112 2478887


Q ss_pred             E
Q 009871          152 M  152 (523)
Q Consensus       152 ~  152 (523)
                      .
T Consensus       127 ~  127 (189)
T TIGR00095       127 L  127 (189)
T ss_pred             E
Confidence            6

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>TIGR00478 tly hemolysin TlyA family protein

Probab=98.02  E-value=1.6e-05  Score=74.72  Aligned_cols=74  Identities=14%  Similarity=0.037  Sum_probs=47.9

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHH-HHhccccCCCcEEEEEeeccCCccCC-CCCCCceeEEE
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNL-VMTHKDFTETRVSTFVCDLISDDLSR-QISPSSIDIVT  151 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~-a~~~~~~~~~~v~~~~~d~~~~~~~~-~~~~~~fD~V~  151 (523)
                      .++.+|||+|||||.++..+++.+ ..+|+|+|+++.|+.. .+++.+    -..+...|+...+... +..-..+|+++
T Consensus        74 ~~~~~vlDiG~gtG~~t~~l~~~g-a~~v~avD~~~~~l~~~l~~~~~----v~~~~~~ni~~~~~~~~~~d~~~~Dvsf  148 (228)
T TIGR00478        74 VKNKIVLDVGSSTGGFTDCALQKG-AKEVYGVDVGYNQLAEKLRQDER----VKVLERTNIRYVTPADIFPDFATFDVSF  148 (228)
T ss_pred             CCCCEEEEcccCCCHHHHHHHHcC-CCEEEEEeCCHHHHHHHHhcCCC----eeEeecCCcccCCHhHcCCCceeeeEEE
Confidence            467789999999999999999884 3579999999988875 444321    1123333444221110 11223788888


Q ss_pred             E
Q 009871          152 M  152 (523)
Q Consensus       152 ~  152 (523)
                      +
T Consensus       149 i  149 (228)
T TIGR00478       149 I  149 (228)
T ss_pred             e
Confidence            7

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>PRK00536 speE spermidine synthase; Provisional

Probab=98.02  E-value=0.00013  Score=69.99  Aligned_cols=126  Identities=10%  Similarity=-0.014  Sum_probs=83.7

Q ss_pred             CCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCc
Q 009871          335 AGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGF  414 (523)
Q Consensus       335 ~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~f  414 (523)
                      .-++||=+|.|-|+....+++.. .+|+++|+|+++++.+++-+..........++++..  |-.        ....++|
T Consensus        72 ~pk~VLIiGGGDGg~~REvLkh~-~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~--~~~--------~~~~~~f  140 (262)
T PRK00536         72 ELKEVLIVDGFDLELAHQLFKYD-THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK--QLL--------DLDIKKY  140 (262)
T ss_pred             CCCeEEEEcCCchHHHHHHHCcC-CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee--hhh--------hccCCcC
Confidence            44799999999998888888875 499999999999999988333221122345666653  211        1123689


Q ss_pred             cEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChh---HHHHHHHHcCCEEEEEcCC
Q 009871          415 EVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEP---SMLSAATQCGFRLVDKWPS  486 (523)
Q Consensus       415 D~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~---~~~~~~~~~gf~~~~~~~~  486 (523)
                      |+||. |.++.    +.+.+.+++.|         +|+|.++.-...-....+   .+...+++ .|........
T Consensus       141 DVIIv-Ds~~~----~~fy~~~~~~L---------~~~Gi~v~Qs~sp~~~~~~~~~i~~~l~~-~F~~v~~y~~  200 (262)
T PRK00536        141 DLIIC-LQEPD----IHKIDGLKRML---------KEDGVFISVAKHPLLEHVSMQNALKNMGD-FFSIAMPFVA  200 (262)
T ss_pred             CEEEE-cCCCC----hHHHHHHHHhc---------CCCcEEEECCCCcccCHHHHHHHHHHHHh-hCCceEEEEe
Confidence            99996 76655    56778899999         679988874433222232   33444445 6885555433

>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised

Probab=98.02  E-value=0.00017  Score=67.05  Aligned_cols=154  Identities=19%  Similarity=0.201  Sum_probs=97.5

Q ss_pred             CcccccchhHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhc-CCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCc
Q 009871          311 STGLMLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAG-SADLVVATDGDSIALDLLAQNVTANLKPPFLAK  389 (523)
Q Consensus       311 ~~G~~~W~~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~-~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~  389 (523)
                      +-|..++++++.=+.|+.++..+ .|++||=||=+-- .++.++.. .+++|+.+|+++.+++..++.++..++.     
T Consensus        21 DQ~~~T~eT~~~Ra~~~~~~gdL-~gk~il~lGDDDL-tSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~-----   93 (243)
T PF01861_consen   21 DQGYATPETTLRRAALMAERGDL-EGKRILFLGDDDL-TSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLP-----   93 (243)
T ss_dssp             T---B-HHHHHHHHHHHHHTT-S-TT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT-------
T ss_pred             ccccccHHHHHHHHHHHHhcCcc-cCCEEEEEcCCcH-HHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCc-----
Confidence            34577888999999999888654 8999999997763 55555543 4679999999999999999999887763     


Q ss_pred             eEEEeeecCCCCcchhhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCCh---
Q 009871          390 LITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDE---  466 (523)
Q Consensus       390 v~~~~ldw~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~---  466 (523)
                      +.+...|..+.-.     +-..++||+++. |..|-.+.+..++...-..|+        .+|+..++++..+..+.   
T Consensus        94 i~~~~~DlR~~LP-----~~~~~~fD~f~T-DPPyT~~G~~LFlsRgi~~Lk--------~~g~~gy~~~~~~~~s~~~~  159 (243)
T PF01861_consen   94 IEAVHYDLRDPLP-----EELRGKFDVFFT-DPPYTPEGLKLFLSRGIEALK--------GEGCAGYFGFTHKEASPDKW  159 (243)
T ss_dssp             EEEE---TTS--------TTTSS-BSEEEE----SSHHHHHHHHHHHHHTB---------STT-EEEEEE-TTT--HHHH
T ss_pred             eEEEEecccccCC-----HHHhcCCCEEEe-CCCCCHHHHHHHHHHHHHHhC--------CCCceEEEEEecCcCcHHHH
Confidence            7777777776411     112469999998 889999999999999888882        24667788887765332   


Q ss_pred             hHHHHHHHHcCCEEEEEcC
Q 009871          467 PSMLSAATQCGFRLVDKWP  485 (523)
Q Consensus       467 ~~~~~~~~~~gf~~~~~~~  485 (523)
                      ..+.+.+.+.||-+.++.+
T Consensus       160 ~~~Q~~l~~~gl~i~dii~  178 (243)
T PF01861_consen  160 LEVQRFLLEMGLVITDIIP  178 (243)
T ss_dssp             HHHHHHHHTS--EEEEEEE
T ss_pred             HHHHHHHHHCCcCHHHHHh
Confidence            2566777789999999865

All the members are 350-400 amino acids long.; PDB: 2QM3_A.

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=98.02  E-value=6.2e-06  Score=74.63  Aligned_cols=78  Identities=23%  Similarity=0.290  Sum_probs=50.7

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC----CCcEEEEEeeccCCccCCCCCCCceeE
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT----ETRVSTFVCDLISDDLSRQISPSSIDI  149 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~----~~~v~~~~~d~~~~~~~~~~~~~~fD~  149 (523)
                      ..+.+|||+|||+|..+..++...+..+|+..|.++ .++.++.+...+    ..++.+...|..+.........++||+
T Consensus        44 ~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~  122 (173)
T PF10294_consen   44 FRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDV  122 (173)
T ss_dssp             TTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSE
T ss_pred             cCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCE
Confidence            467899999999999999988885567899999999 999998876543    366777777765421011134568999


Q ss_pred             EEE
Q 009871          150 VTM  152 (523)
Q Consensus       150 V~~  152 (523)
                      |++
T Consensus       123 Ila  125 (173)
T PF10294_consen  123 ILA  125 (173)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            998

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=98.01  E-value=3e-05  Score=75.20  Aligned_cols=87  Identities=22%  Similarity=0.215  Sum_probs=49.5

Q ss_pred             CCeEEEECCCccHH-HHHHHhcCCCEEEEEcCChHHHHHHHHHHHhc-CCCCCCCceEEEeeecCCCCcchhhhhhcCCC
Q 009871          336 GKKVLELGCGCGGI-CSMVAAGSADLVVATDGDSIALDLLAQNVTAN-LKPPFLAKLITKRLEWGNRDHIEAIKEENNEG  413 (523)
Q Consensus       336 ~~~VLElG~G~G~l-~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n-~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~  413 (523)
                      .-++||||||...+ +++.++...-+++|||+++.+++.|++|++.| .+.   .+|.+....=. ...+..+. ...+.
T Consensus       103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~---~~I~l~~~~~~-~~i~~~i~-~~~e~  177 (299)
T PF05971_consen  103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLE---SRIELRKQKNP-DNIFDGII-QPNER  177 (299)
T ss_dssp             --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-T---TTEEEEE--ST--SSTTTST-T--S-
T ss_pred             ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccc---cceEEEEcCCc-cccchhhh-cccce
Confidence            56899999999855 44445555569999999999999999999999 765   56766543211 11122111 12458


Q ss_pred             ccEEEEccccCCCC
Q 009871          414 FEVILGTDVSYIPE  427 (523)
Q Consensus       414 fD~Ii~~d~~y~~~  427 (523)
                      ||+.+|+..+|...
T Consensus       178 ~dftmCNPPFy~s~  191 (299)
T PF05971_consen  178 FDFTMCNPPFYSSQ  191 (299)
T ss_dssp             EEEEEE-----SS-
T ss_pred             eeEEecCCccccCh
Confidence            99999999999854

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=98.01  E-value=8.1e-06  Score=82.86  Aligned_cols=58  Identities=22%  Similarity=0.282  Sum_probs=49.7

Q ss_pred             CCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCC-CcEEEEEeeccC
Q 009871           76 RKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLIS  135 (523)
Q Consensus        76 ~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~-~~v~~~~~d~~~  135 (523)
                      +.+|||++||+|.++..+++...  +|+|||+|+.|++.|+++...++ .+++++++|+.+
T Consensus       207 ~~~vLDl~~G~G~~sl~la~~~~--~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~  265 (362)
T PRK05031        207 KGDLLELYCGNGNFTLALARNFR--RVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEE  265 (362)
T ss_pred             CCeEEEEeccccHHHHHHHhhCC--EEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHH
Confidence            35799999999999999988753  69999999999999999875443 479999999865

>TIGR00755 ksgA dimethyladenosine transferase

Probab=98.01  E-value=2.2e-05  Score=75.74  Aligned_cols=69  Identities=17%  Similarity=0.221  Sum_probs=51.2

Q ss_pred             HHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCC
Q 009871          324 AAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGN  399 (523)
Q Consensus       324 a~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~  399 (523)
                      ++.+.+.....++.+|||+|||+|.++..++..+. .|+++|+++.+++.++.++..      ..++.+...|..+
T Consensus        18 ~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~~iE~d~~~~~~l~~~~~~------~~~v~v~~~D~~~   86 (253)
T TIGR00755        18 IQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAK-KVTAIEIDPRLAEILRKLLSL------YERLEVIEGDALK   86 (253)
T ss_pred             HHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCC-cEEEEECCHHHHHHHHHHhCc------CCcEEEEECchhc
Confidence            44444444455788999999999999998888874 699999999999999887643      1345555555443

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=98.01  E-value=2.1e-05  Score=77.01  Aligned_cols=124  Identities=17%  Similarity=0.126  Sum_probs=85.1

Q ss_pred             hcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC-CCcEEEEEe-eccCCccCCCCCCCcee
Q 009871           71 FSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT-ETRVSTFVC-DLISDDLSRQISPSSID  148 (523)
Q Consensus        71 ~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~-~~~v~~~~~-d~~~~~~~~~~~~~~fD  148 (523)
                      ....++..|||==||||.++....-.  +++++|+|++..|++-|+.|..+- .....+... |++.+    |+++++||
T Consensus       193 a~v~~G~~vlDPFcGTGgiLiEagl~--G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~l----pl~~~~vd  266 (347)
T COG1041         193 ARVKRGELVLDPFCGTGGILIEAGLM--GARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNL----PLRDNSVD  266 (347)
T ss_pred             hccccCCEeecCcCCccHHHHhhhhc--CceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccC----CCCCCccc
Confidence            34467889999999999999776655  788999999999999999988643 344444555 99988    67888999


Q ss_pred             EEEE----ccc-cccceeeec---------ceEEecCCeEEEeeCHHHHHHHHHhCCCcEEEEEeEe
Q 009871          149 IVTM----ERL-TGKDQKISE---------NFYVRGDGTRAFYFSNDFLTSLFKENGFDVEELGLCC  201 (523)
Q Consensus       149 ~V~~----~~~-~~~~~~~~~---------~~~~~~~g~~~~~~~~~~l~~ll~~~Gf~~~~~~~~~  201 (523)
                      .|++    .+- ..++..+.+         ...++++|..+++.. ......+.+.||.++.....+
T Consensus       267 aIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p-~~~~~~~~~~~f~v~~~~~~~  332 (347)
T COG1041         267 AIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP-RDPRHELEELGFKVLGRFTMR  332 (347)
T ss_pred             eEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC-CcchhhHhhcCceEEEEEEEe
Confidence            9999    111 011111110         124667777777555 334444556889987665443

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=98.00  E-value=7.4e-06  Score=74.84  Aligned_cols=141  Identities=20%  Similarity=0.213  Sum_probs=78.6

Q ss_pred             hHHHHHHHHhcCCCCC--CCCeEEEECCCccHHHHHHHhcC--CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEe
Q 009871          319 SAHLMAAVLARNPTIV--AGKKVLELGCGCGGICSMVAAGS--ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKR  394 (523)
Q Consensus       319 ~a~~la~~l~~~~~~~--~~~~VLElG~G~G~l~~~~a~~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~  394 (523)
                      |+.-|.+.+....-+.  .+.+||||||++|+.+-.++.++  ..+|+++|+.+.           ...    ..+....
T Consensus         5 a~~KL~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-----------~~~----~~~~~i~   69 (181)
T PF01728_consen    5 AAFKLYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-----------DPL----QNVSFIQ   69 (181)
T ss_dssp             HHHHHHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-----------GS-----TTEEBTT
T ss_pred             HHHHHHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEecccc-----------ccc----cceeeee
Confidence            5677888887776333  34899999999999999999987  569999999775           000    1111111


Q ss_pred             eecCCCCcchhhhhh---cCCCccEEEEccccCC------------CCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEE
Q 009871          395 LEWGNRDHIEAIKEE---NNEGFEVILGTDVSYI------------PEAILPLFATAKELTASSNKSLREDQQPAFILCH  459 (523)
Q Consensus       395 ldw~~~~~~~~~~~~---~~~~fD~Ii~~d~~y~------------~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~  459 (523)
                      .|..+......+...   ....||+|++ |+-..            .......+..+..+|         ++||.+++-.
T Consensus        70 ~d~~~~~~~~~i~~~~~~~~~~~dlv~~-D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L---------~~gG~~v~K~  139 (181)
T PF01728_consen   70 GDITNPENIKDIRKLLPESGEKFDLVLS-DMAPNVSGDRNIDEFISIRLILSQLLLALELL---------KPGGTFVIKV  139 (181)
T ss_dssp             GGGEEEEHSHHGGGSHGTTTCSESEEEE--------SSHHSSHHHHHHHHHHHHHHHHHHH---------CTTEEEEEEE
T ss_pred             cccchhhHHHhhhhhccccccCcceecc-ccccCCCCchhhHHHHHHHHHHHHHHHHHhhh---------cCCCEEEEEe
Confidence            111111112222222   1268999997 54211            112223333444567         6799877755


Q ss_pred             eecCCChhHHHHHHHHcCCEEEEEcCC
Q 009871          460 IFRQVDEPSMLSAATQCGFRLVDKWPS  486 (523)
Q Consensus       460 ~~r~~~~~~~~~~~~~~gf~~~~~~~~  486 (523)
                      ..-... ..++..++. .|+...+..+
T Consensus       140 ~~~~~~-~~~~~~l~~-~F~~v~~~Kp  164 (181)
T PF01728_consen  140 FKGPEI-EELIYLLKR-CFSKVKIVKP  164 (181)
T ss_dssp             SSSTTS-HHHHHHHHH-HHHHEEEEE-
T ss_pred             ccCccH-HHHHHHHHh-CCeEEEEEEC
Confidence            442223 467777666 4665666554

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=98.00  E-value=1e-05  Score=74.92  Aligned_cols=80  Identities=20%  Similarity=0.286  Sum_probs=63.7

Q ss_pred             hcCCCCCeEEEECCCccccHHHHHhhCC-CCEEEEEeCCHHHHHHHHhccccC--CCcEEEEE-eeccCCccCCCCCCCc
Q 009871           71 FSGAGRKDVLEVGCGAGNTIFPLIAAYP-DVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFV-CDLISDDLSRQISPSS  146 (523)
Q Consensus        71 ~~~~~~~~iLDiGcG~G~~~~~l~~~~~-~~~v~gvD~S~~~l~~a~~~~~~~--~~~v~~~~-~d~~~~~~~~~~~~~~  146 (523)
                      +...+.++|||||.+.|..+.+|+...| +.+++.||+++++.+.|+++.+..  ..++..+. +|..+. +. ....++
T Consensus        55 ~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~-l~-~~~~~~  132 (219)
T COG4122          55 ARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDV-LS-RLLDGS  132 (219)
T ss_pred             HHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHH-HH-hccCCC
Confidence            3446789999999999999999999977 889999999999999999987533  34577777 476542 11 134689


Q ss_pred             eeEEEE
Q 009871          147 IDIVTM  152 (523)
Q Consensus       147 fD~V~~  152 (523)
                      ||+||.
T Consensus       133 fDliFI  138 (219)
T COG4122         133 FDLVFI  138 (219)
T ss_pred             ccEEEE
Confidence            999987

>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]

Probab=97.92  E-value=3.6e-05  Score=73.68  Aligned_cols=72  Identities=22%  Similarity=0.238  Sum_probs=57.7

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC--CCcEEEEEeeccCCccCCCCCCCceeEEE
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISDDLSRQISPSSIDIVT  151 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~~~~~~~~~~fD~V~  151 (523)
                      -.++.|||||||+|.+....++.+ ..+|++|+.| +|.+.|++..+.+  ..++..+.+-+++..+|     ++.|+++
T Consensus       176 F~~kiVlDVGaGSGILS~FAaqAG-A~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLP-----Ek~DviI  248 (517)
T KOG1500|consen  176 FQDKIVLDVGAGSGILSFFAAQAG-AKKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKIEDIELP-----EKVDVII  248 (517)
T ss_pred             cCCcEEEEecCCccHHHHHHHHhC-cceEEEEehh-HHHHHHHHHHhcCCccceEEEccCccccccCc-----hhccEEE
Confidence            467899999999999998877775 4579999975 5888998865433  46889999999887443     5799999


Q ss_pred             E
Q 009871          152 M  152 (523)
Q Consensus       152 ~  152 (523)
                      +
T Consensus       249 S  249 (517)
T KOG1500|consen  249 S  249 (517)
T ss_pred             e
Confidence            9

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=97.91  E-value=3.3e-05  Score=66.89  Aligned_cols=89  Identities=18%  Similarity=0.156  Sum_probs=70.8

Q ss_pred             chhhhHHHHhhhhcCCCCCeEEEECCCccccHHHHHhh-CCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCc
Q 009871           59 DRHYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAA-YPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDD  137 (523)
Q Consensus        59 ~~~~l~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~  137 (523)
                      ...|+.+.....+....+.-|||+|.|||.++..++++ .+...+++++.|++.+....++.    +.++++.+|+.+++
T Consensus        32 sSs~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~----p~~~ii~gda~~l~  107 (194)
T COG3963          32 SSSILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY----PGVNIINGDAFDLR  107 (194)
T ss_pred             CcHHHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC----CCccccccchhhHH
Confidence            44566666655566567788999999999999999998 45678999999999999988865    44678999998765


Q ss_pred             --cCCCCCCCceeEEEE
Q 009871          138 --LSRQISPSSIDIVTM  152 (523)
Q Consensus       138 --~~~~~~~~~fD~V~~  152 (523)
                        +. .+.+..||.|+|
T Consensus       108 ~~l~-e~~gq~~D~viS  123 (194)
T COG3963         108 TTLG-EHKGQFFDSVIS  123 (194)
T ss_pred             HHHh-hcCCCeeeeEEe
Confidence              33 356778999999

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.91  E-value=3.8e-05  Score=73.60  Aligned_cols=71  Identities=25%  Similarity=0.440  Sum_probs=58.1

Q ss_pred             cCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEE
Q 009871           72 SGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVT  151 (523)
Q Consensus        72 ~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~  151 (523)
                      ......+|||||+|+|.++..+++++|+.+++.+|+ |.+++.+++     ..+++++.+|+. .    ++|.  +|+++
T Consensus        97 d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~-----~~rv~~~~gd~f-~----~~P~--~D~~~  163 (241)
T PF00891_consen   97 DFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE-----ADRVEFVPGDFF-D----PLPV--ADVYL  163 (241)
T ss_dssp             TTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH-----TTTEEEEES-TT-T----CCSS--ESEEE
T ss_pred             cccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc-----ccccccccccHH-h----hhcc--cccee
Confidence            335667899999999999999999999999999998 889998888     478999999998 4    4555  99998


Q ss_pred             Eccc
Q 009871          152 MERL  155 (523)
Q Consensus       152 ~~~~  155 (523)
                      +.++
T Consensus       164 l~~v  167 (241)
T PF00891_consen  164 LRHV  167 (241)
T ss_dssp             EESS
T ss_pred             eehh
Confidence            8444

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]

Probab=97.88  E-value=4.2e-05  Score=70.86  Aligned_cols=113  Identities=14%  Similarity=0.259  Sum_probs=80.2

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEEE-
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM-  152 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~-  152 (523)
                      +....|-|+|||-+.++.   ..  ...|+.+|+-+.              +-+++.+|+.+.    |+++++.|++++ 
T Consensus       179 ~~~~vIaD~GCGEakiA~---~~--~~kV~SfDL~a~--------------~~~V~~cDm~~v----Pl~d~svDvaV~C  235 (325)
T KOG3045|consen  179 PKNIVIADFGCGEAKIAS---SE--RHKVHSFDLVAV--------------NERVIACDMRNV----PLEDESVDVAVFC  235 (325)
T ss_pred             cCceEEEecccchhhhhh---cc--ccceeeeeeecC--------------CCceeeccccCC----cCccCcccEEEee
Confidence            567889999999999985   22  234999998432              235788999988    889999999988 


Q ss_pred             --------ccccccceeeecceEEecCCeEEE------eeCHHHHHHHHHhCCCcEEEEEeEeeeeeecccCccceeEEE
Q 009871          153 --------ERLTGKDQKISENFYVRGDGTRAF------YFSNDFLTSLFKENGFDVEELGLCCKQVENRARELVMNRRWV  218 (523)
Q Consensus       153 --------~~~~~~~~~~~~~~~~~~~g~~~~------~~~~~~l~~ll~~~Gf~~~~~~~~~~~~~~~~~~~~~~r~~~  218 (523)
                              ..|.....+     +++++|.+..      |-+...+.+.+...||++......             +..|+
T Consensus       236 LSLMgtn~~df~kEa~R-----iLk~gG~l~IAEv~SRf~dv~~f~r~l~~lGF~~~~~d~~-------------n~~F~  297 (325)
T KOG3045|consen  236 LSLMGTNLADFIKEANR-----ILKPGGLLYIAEVKSRFSDVKGFVRALTKLGFDVKHKDVS-------------NKYFT  297 (325)
T ss_pred             HhhhcccHHHHHHHHHH-----HhccCceEEEEehhhhcccHHHHHHHHHHcCCeeeehhhh-------------cceEE
Confidence                    344444444     6777887654      447778899999999997655332             13355


Q ss_pred             EEEEEecCC
Q 009871          219 QAVFCSSGG  227 (523)
Q Consensus       219 ~~~~~~~~~  227 (523)
                      -..|.|+..
T Consensus       298 lfefkK~~~  306 (325)
T KOG3045|consen  298 LFEFKKTPK  306 (325)
T ss_pred             EEEEecCCc
Confidence            556666654

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=97.88  E-value=4.8e-05  Score=78.91  Aligned_cols=72  Identities=29%  Similarity=0.388  Sum_probs=53.1

Q ss_pred             CCeEEEECCCccccHHHHHhhC----CCCEEEEEeCCHHHHHHHHhccccC--CCcEEEEEeeccCCccCCCCCCCceeE
Q 009871           76 RKDVLEVGCGAGNTIFPLIAAY----PDVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISDDLSRQISPSSIDI  149 (523)
Q Consensus        76 ~~~iLDiGcG~G~~~~~l~~~~----~~~~v~gvD~S~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~~~~~~~~~~fD~  149 (523)
                      +..|||||||+|.+....++.+    ...+|+|||-|+.++...+++...+  ..+|+++++|+++..+     +.++|+
T Consensus       187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~l-----pekvDI  261 (448)
T PF05185_consen  187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVEL-----PEKVDI  261 (448)
T ss_dssp             T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCH-----SS-EEE
T ss_pred             ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCC-----CCceeE
Confidence            5789999999999987666553    2468999999999987776542222  4689999999998743     348999


Q ss_pred             EEE
Q 009871          150 VTM  152 (523)
Q Consensus       150 V~~  152 (523)
                      |+|
T Consensus       262 IVS  264 (448)
T PF05185_consen  262 IVS  264 (448)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            999

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>KOG2940 consensus Predicted methyltransferase [General function prediction only]

Probab=97.86  E-value=2.1e-05  Score=71.39  Aligned_cols=127  Identities=17%  Similarity=0.130  Sum_probs=86.2

Q ss_pred             CCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEEE--
Q 009871           75 GRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM--  152 (523)
Q Consensus        75 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~--  152 (523)
                      ....++|||||-|.....|..++ -.+++-+|.|-.|++.|+.... .......+++|-+.+    +|.+++||+|++  
T Consensus        72 ~fp~a~diGcs~G~v~rhl~~e~-vekli~~DtS~~M~~s~~~~qd-p~i~~~~~v~DEE~L----df~ens~DLiisSl  145 (325)
T KOG2940|consen   72 SFPTAFDIGCSLGAVKRHLRGEG-VEKLIMMDTSYDMIKSCRDAQD-PSIETSYFVGDEEFL----DFKENSVDLIISSL  145 (325)
T ss_pred             hCcceeecccchhhhhHHHHhcc-hhheeeeecchHHHHHhhccCC-CceEEEEEecchhcc----cccccchhhhhhhh
Confidence            45679999999999999998885 2369999999999999987532 234567888898888    688999999998  


Q ss_pred             -ccccc--cceeeecceEEecCCeEE--------------------------------EeeCHHHHHHHHHhCCCcEEEE
Q 009871          153 -ERLTG--KDQKISENFYVRGDGTRA--------------------------------FYFSNDFLTSLFKENGFDVEEL  197 (523)
Q Consensus       153 -~~~~~--~~~~~~~~~~~~~~g~~~--------------------------------~~~~~~~l~~ll~~~Gf~~~~~  197 (523)
                       ..+..  ++.-+.....++|||.++                                .|....++-.+|..+||....+
T Consensus       146 slHW~NdLPg~m~~ck~~lKPDg~FiasmlggdTLyELR~slqLAelER~GGiSphiSPf~qvrDiG~LL~rAGF~m~tv  225 (325)
T KOG2940|consen  146 SLHWTNDLPGSMIQCKLALKPDGLFIASMLGGDTLYELRCSLQLAELEREGGISPHISPFTQVRDIGNLLTRAGFSMLTV  225 (325)
T ss_pred             hhhhhccCchHHHHHHHhcCCCccchhHHhccccHHHHHHHhhHHHHHhccCCCCCcChhhhhhhhhhHHhhcCccccee
Confidence             11100  000000011344444432                                1234567888999999998777


Q ss_pred             EeEeeeeeec
Q 009871          198 GLCCKQVENR  207 (523)
Q Consensus       198 ~~~~~~~~~~  207 (523)
                      ....-++.+.
T Consensus       226 DtDEi~v~Yp  235 (325)
T KOG2940|consen  226 DTDEIVVGYP  235 (325)
T ss_pred             cccceeecCc
Confidence            6655544443

>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]

Probab=97.86  E-value=7.9e-05  Score=71.33  Aligned_cols=142  Identities=13%  Similarity=0.129  Sum_probs=90.4

Q ss_pred             cccchhHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCC--CCCCCceE
Q 009871          314 LMLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLK--PPFLAKLI  391 (523)
Q Consensus       314 ~~~W~~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~--~~~~~~v~  391 (523)
                      +-.|--+.++-.|..      ++..+++||||-|+-.+-.-+.|...++++|+....++.|+++...-..  ....=.+.
T Consensus       102 fNNwIKs~LI~~y~~------~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~  175 (389)
T KOG1975|consen  102 FNNWIKSVLINLYTK------RGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAV  175 (389)
T ss_pred             hhHHHHHHHHHHHhc------cccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeE
Confidence            446777777777763      6678999999999776666667888999999999999999876652111  00000122


Q ss_pred             EEeeecCCCCcchhhhhhcCCCccEEEEccccCC----CCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChh
Q 009871          392 TKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYI----PEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEP  467 (523)
Q Consensus       392 ~~~ldw~~~~~~~~~~~~~~~~fD~Ii~~d~~y~----~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~  467 (523)
                      +...|-... .+..+.+..+.+||+|=+-=++++    .+...-+++.+.+.|         +|||+||-+.+.    .+
T Consensus       176 f~~~Dc~~~-~l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~L---------kpGG~FIgTiPd----sd  241 (389)
T KOG1975|consen  176 FIAADCFKE-RLMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCL---------KPGGVFIGTIPD----SD  241 (389)
T ss_pred             EEEeccchh-HHHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhc---------CCCcEEEEecCc----HH
Confidence            333332221 111111223445999987655544    456777888999999         789999876543    34


Q ss_pred             HHHHHHHH
Q 009871          468 SMLSAATQ  475 (523)
Q Consensus       468 ~~~~~~~~  475 (523)
                      .++..+++
T Consensus       242 ~Ii~rlr~  249 (389)
T KOG1975|consen  242 VIIKRLRA  249 (389)
T ss_pred             HHHHHHHh
Confidence            45555544

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=97.85  E-value=8.2e-05  Score=70.73  Aligned_cols=126  Identities=14%  Similarity=0.126  Sum_probs=81.8

Q ss_pred             CCCCCeEEEECCCccccHHHHHhhCCC--CEEEEEeCCHHHHHHHHhccccC--CCcEEEEEeeccCCccCCCCCCCcee
Q 009871           73 GAGRKDVLEVGCGAGNTIFPLIAAYPD--VFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISDDLSRQISPSSID  148 (523)
Q Consensus        73 ~~~~~~iLDiGcG~G~~~~~l~~~~~~--~~v~gvD~S~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~~~~~~~~~~fD  148 (523)
                      ...+.+||||.||.|+..+-.++..|.  ..|.-.|+|+..|+..++..+..  ..-++|.++|+.+.+--..+ +...+
T Consensus       133 ~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l-~p~P~  211 (311)
T PF12147_consen  133 QGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAAL-DPAPT  211 (311)
T ss_pred             cCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhcc-CCCCC
Confidence            357789999999999999999988775  78999999999999999876443  24459999998763211111 22356


Q ss_pred             EEEE--------------------ccccccceeeec------------ceEEec--CC--eEEEeeCHHHHHHHHHhCCC
Q 009871          149 IVTM--------------------ERLTGKDQKISE------------NFYVRG--DG--TRAFYFSNDFLTSLFKENGF  192 (523)
Q Consensus       149 ~V~~--------------------~~~~~~~~~~~~------------~~~~~~--~g--~~~~~~~~~~l~~ll~~~Gf  192 (523)
                      +++.                    .....+++.+.-            ...+..  +|  -.+...+..|+.++++++||
T Consensus       212 l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsHr~g~~WvMRrRsq~EmD~Lv~~aGF  291 (311)
T PF12147_consen  212 LAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTSHRDGKAWVMRRRSQAEMDQLVEAAGF  291 (311)
T ss_pred             EEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhcccCCCceEEEecCHHHHHHHHHHcCC
Confidence            6666                    111222222210            000100  11  12233589999999999999


Q ss_pred             cEEEEEe
Q 009871          193 DVEELGL  199 (523)
Q Consensus       193 ~~~~~~~  199 (523)
                      +.+....
T Consensus       292 ~K~~q~I  298 (311)
T PF12147_consen  292 EKIDQRI  298 (311)
T ss_pred             chhhhee
Confidence            9655543

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]

Probab=97.84  E-value=0.00018  Score=66.71  Aligned_cols=129  Identities=19%  Similarity=0.259  Sum_probs=89.5

Q ss_pred             ccchhHHH--HHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEE
Q 009871          315 MLWESAHL--MAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLIT  392 (523)
Q Consensus       315 ~~W~~a~~--la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~  392 (523)
                      .-||-..+  +.++|...+   ....|-|+|||-+-++.    .-...|+..|+-+           .|      .+|.+
T Consensus       161 ~kWP~nPld~ii~~ik~r~---~~~vIaD~GCGEakiA~----~~~~kV~SfDL~a-----------~~------~~V~~  216 (325)
T KOG3045|consen  161 KKWPENPLDVIIRKIKRRP---KNIVIADFGCGEAKIAS----SERHKVHSFDLVA-----------VN------ERVIA  216 (325)
T ss_pred             HhCCCChHHHHHHHHHhCc---CceEEEecccchhhhhh----ccccceeeeeeec-----------CC------Cceee
Confidence            34655443  667776554   56689999999985433    3345799999842           11      22322


Q ss_pred             EeeecCCCCcchhhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecC-CChhHHHH
Q 009871          393 KRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ-VDEPSMLS  471 (523)
Q Consensus       393 ~~ldw~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~-~~~~~~~~  471 (523)
                        .|..+.       ++.+++.|++|.+=.+ ...++..++..+.++|         ++||.++++...-+ .+...|.+
T Consensus       217 --cDm~~v-------Pl~d~svDvaV~CLSL-Mgtn~~df~kEa~RiL---------k~gG~l~IAEv~SRf~dv~~f~r  277 (325)
T KOG3045|consen  217 --CDMRNV-------PLEDESVDVAVFCLSL-MGTNLADFIKEANRIL---------KPGGLLYIAEVKSRFSDVKGFVR  277 (325)
T ss_pred             --ccccCC-------cCccCcccEEEeeHhh-hcccHHHHHHHHHHHh---------ccCceEEEEehhhhcccHHHHHH
Confidence              222221       4567899999976333 3456999999999999         78999999987644 45567999


Q ss_pred             HHHHcCCEEEEEcCC
Q 009871          472 AATQCGFRLVDKWPS  486 (523)
Q Consensus       472 ~~~~~gf~~~~~~~~  486 (523)
                      .+...||.+......
T Consensus       278 ~l~~lGF~~~~~d~~  292 (325)
T KOG3045|consen  278 ALTKLGFDVKHKDVS  292 (325)
T ss_pred             HHHHcCCeeeehhhh
Confidence            999999999887654

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.83  E-value=1.2e-05  Score=73.74  Aligned_cols=111  Identities=15%  Similarity=0.166  Sum_probs=66.6

Q ss_pred             CCCeEEEECCCcc----HHHHHHHhc---CC---CEEEEEcCChHHHHHHHHHHHhc----CCC------------C---
Q 009871          335 AGKKVLELGCGCG----GICSMVAAG---SA---DLVVATDGDSIALDLLAQNVTAN----LKP------------P---  385 (523)
Q Consensus       335 ~~~~VLElG~G~G----~l~~~~a~~---~~---~~V~~~D~~~~~l~~~~~n~~~n----~~~------------~---  385 (523)
                      +.-+|.-.||+||    .+++++...   ..   -+|+|||+|+.+|+.|++-+-..    +++            .   
T Consensus        31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~  110 (196)
T PF01739_consen   31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY  110 (196)
T ss_dssp             S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred             CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence            3459999999999    334444441   12   38999999999999998532111    110            0   


Q ss_pred             -----CCCceEEEeeecCCCCcchhhhhhcCCCccEEEEccccCC--CCChHHHHHHHHHHhhccCCCCCCCCCcEEEEE
Q 009871          386 -----FLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYI--PEAILPLFATAKELTASSNKSLREDQQPAFILC  458 (523)
Q Consensus       386 -----~~~~v~~~~ldw~~~~~~~~~~~~~~~~fD~Ii~~d~~y~--~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~  458 (523)
                           -...|.+...+..+.       ....+.||+|+|..|+.+  .+....+++.+.+.|         +|||.+++.
T Consensus       111 ~v~~~lr~~V~F~~~NL~~~-------~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L---------~pgG~L~lG  174 (196)
T PF01739_consen  111 RVKPELRKMVRFRRHNLLDP-------DPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSL---------KPGGYLFLG  174 (196)
T ss_dssp             TE-HHHHTTEEEEE--TT-S-------------EEEEEE-SSGGGS-HHHHHHHHHHHGGGE---------EEEEEEEE-
T ss_pred             eEChHHcCceEEEecccCCC-------CcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHc---------CCCCEEEEe
Confidence                 013477777766651       123569999999998744  557788999999999         679999998


Q ss_pred             Eee
Q 009871          459 HIF  461 (523)
Q Consensus       459 ~~~  461 (523)
                      +..
T Consensus       175 ~sE  177 (196)
T PF01739_consen  175 HSE  177 (196)
T ss_dssp             TT-
T ss_pred             cCc
Confidence            655

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.81  E-value=0.00055  Score=63.33  Aligned_cols=143  Identities=20%  Similarity=0.172  Sum_probs=91.9

Q ss_pred             hhHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEE-Eeee
Q 009871          318 ESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLIT-KRLE  396 (523)
Q Consensus       318 ~~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~-~~ld  396 (523)
                      .++.-|...+....-..+|+.|||+|+-||+++-.+..+|+++|+++|..-.-+..--   +.      ..++.+ ...+
T Consensus        62 RG~~KL~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kL---R~------d~rV~~~E~tN  132 (245)
T COG1189          62 RGGLKLEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKL---RN------DPRVIVLERTN  132 (245)
T ss_pred             cHHHHHHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhH---hc------CCcEEEEecCC
Confidence            5678889999888878899999999999999999999999999999998654333211   11      123322 2222


Q ss_pred             cCCCCcchhhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee---------------
Q 009871          397 WGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIF---------------  461 (523)
Q Consensus       397 w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~---------------  461 (523)
                      ..... .   ..+ .+..|+|++ |+-+  -.+..++..+..++         .+++.+++-..+               
T Consensus       133 ~r~l~-~---~~~-~~~~d~~v~-DvSF--ISL~~iLp~l~~l~---------~~~~~~v~LvKPQFEagr~~v~kkGvv  195 (245)
T COG1189         133 VRYLT-P---EDF-TEKPDLIVI-DVSF--ISLKLILPALLLLL---------KDGGDLVLLVKPQFEAGREQVGKKGVV  195 (245)
T ss_pred             hhhCC-H---HHc-ccCCCeEEE-Eeeh--hhHHHHHHHHHHhc---------CCCceEEEEecchhhhhhhhcCcCcee
Confidence            21111 0   012 237788887 4333  34667777777787         445555543332               


Q ss_pred             cCC-----ChhHHHHHHHHcCCEEEEEcCC
Q 009871          462 RQV-----DEPSMLSAATQCGFRLVDKWPS  486 (523)
Q Consensus       462 r~~-----~~~~~~~~~~~~gf~~~~~~~~  486 (523)
                      |..     -...+.+.+.+.||.+..+..+
T Consensus       196 ~d~~~~~~v~~~i~~~~~~~g~~~~gl~~S  225 (245)
T COG1189         196 RDPKLHAEVLSKIENFAKELGFQVKGLIKS  225 (245)
T ss_pred             cCcchHHHHHHHHHHHHhhcCcEEeeeEcc
Confidence            111     1134566777889999988764

>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=97.81  E-value=7.3e-05  Score=67.33  Aligned_cols=106  Identities=12%  Similarity=0.067  Sum_probs=70.0

Q ss_pred             CCCCCeEEEECCCccHHHHHHHhc-CCC--EEEEEcCChHHHHHHHHHHHhcCCC------CCCCceEEEeeecCCCCcc
Q 009871          333 IVAGKKVLELGCGCGGICSMVAAG-SAD--LVVATDGDSIALDLLAQNVTANLKP------PFLAKLITKRLEWGNRDHI  403 (523)
Q Consensus       333 ~~~~~~VLElG~G~G~l~~~~a~~-~~~--~V~~~D~~~~~l~~~~~n~~~n~~~------~~~~~v~~~~ldw~~~~~~  403 (523)
                      +.+|.+.||+|+|||.++..++.. ++.  .++++|.-+++++.+++|+..---.      .....+.+...|-....  
T Consensus        80 L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~--  157 (237)
T KOG1661|consen   80 LQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGY--  157 (237)
T ss_pred             hccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccC--
Confidence            468999999999999998888754 322  3599999999999999999864321      01233444433332211  


Q ss_pred             hhhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEe
Q 009871          404 EAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHI  460 (523)
Q Consensus       404 ~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~  460 (523)
                           -+..+||.|.+.      .....+.+.+-..|         +++|.+++.-.
T Consensus       158 -----~e~a~YDaIhvG------Aaa~~~pq~l~dqL---------~~gGrllip~~  194 (237)
T KOG1661|consen  158 -----AEQAPYDAIHVG------AAASELPQELLDQL---------KPGGRLLIPVG  194 (237)
T ss_pred             -----CccCCcceEEEc------cCccccHHHHHHhh---------ccCCeEEEeec
Confidence                 124589998865      34445555666666         56888777543

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=97.81  E-value=3.8e-05  Score=74.69  Aligned_cols=110  Identities=14%  Similarity=0.073  Sum_probs=73.7

Q ss_pred             CeEEEECCCcc----HHHHHHHhcC-----CCEEEEEcCChHHHHHHHHHHHhc----CCC-------------------
Q 009871          337 KKVLELGCGCG----GICSMVAAGS-----ADLVVATDGDSIALDLLAQNVTAN----LKP-------------------  384 (523)
Q Consensus       337 ~~VLElG~G~G----~l~~~~a~~~-----~~~V~~~D~~~~~l~~~~~n~~~n----~~~-------------------  384 (523)
                      -+|.-.||+||    .++.++....     .-+|+|||+|+.+|+.|++-+-..    +++                   
T Consensus       117 irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~  196 (287)
T PRK10611        117 YRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGLV  196 (287)
T ss_pred             EEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCceE
Confidence            59999999999    3333333321     237999999999999998653110    000                   


Q ss_pred             ----CCCCceEEEeeecCCCCcchhhhhhcCCCccEEEEccccCC--CCChHHHHHHHHHHhhccCCCCCCCCCcEEEEE
Q 009871          385 ----PFLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYI--PEAILPLFATAKELTASSNKSLREDQQPAFILC  458 (523)
Q Consensus       385 ----~~~~~v~~~~ldw~~~~~~~~~~~~~~~~fD~Ii~~d~~y~--~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~  458 (523)
                          .-...|.+...+..+...      ...+.||+|+|..++.+  .+....+++.+.+.|         +|||.+++.
T Consensus       197 ~v~~~lr~~V~F~~~NL~~~~~------~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L---------~pgG~L~lG  261 (287)
T PRK10611        197 RVRQELANYVDFQQLNLLAKQW------AVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLL---------KPDGLLFAG  261 (287)
T ss_pred             EEChHHHccCEEEcccCCCCCC------ccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHh---------CCCcEEEEe
Confidence                011235555555443210      01468999999888754  467899999999999         789998887


Q ss_pred             Eee
Q 009871          459 HIF  461 (523)
Q Consensus       459 ~~~  461 (523)
                      +..
T Consensus       262 ~sE  264 (287)
T PRK10611        262 HSE  264 (287)
T ss_pred             Ccc
Confidence            644

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=97.80  E-value=6.9e-05  Score=71.92  Aligned_cols=111  Identities=14%  Similarity=0.121  Sum_probs=76.1

Q ss_pred             CCeEEEECCCcc----HHHHHHHhcC------CCEEEEEcCChHHHHHHHHHHHh-----cCCCC----------C----
Q 009871          336 GKKVLELGCGCG----GICSMVAAGS------ADLVVATDGDSIALDLLAQNVTA-----NLKPP----------F----  386 (523)
Q Consensus       336 ~~~VLElG~G~G----~l~~~~a~~~------~~~V~~~D~~~~~l~~~~~n~~~-----n~~~~----------~----  386 (523)
                      .-+|.-.||+||    .++.++...+      .-+|+|||+|..+|+.|+.-+-.     -+++.          .    
T Consensus        97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y  176 (268)
T COG1352          97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY  176 (268)
T ss_pred             ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence            459999999999    3444444443      23899999999999999753322     11110          0    


Q ss_pred             ------CCceEEEeeecCCCCcchhhhhhcCCCccEEEEccccC--CCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEE
Q 009871          387 ------LAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSY--IPEAILPLFATAKELTASSNKSLREDQQPAFILC  458 (523)
Q Consensus       387 ------~~~v~~~~ldw~~~~~~~~~~~~~~~~fD~Ii~~d~~y--~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~  458 (523)
                            ...|.+..++..+..       ...+.||+|+|-+|+-  +.+.-..++..+...|         +|||.+++.
T Consensus       177 ~v~~~ir~~V~F~~~NLl~~~-------~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L---------~~gG~LflG  240 (268)
T COG1352         177 RVKEELRKMVRFRRHNLLDDS-------PFLGKFDLIFCRNVLIYFDEETQERILRRFADSL---------KPGGLLFLG  240 (268)
T ss_pred             EEChHHhcccEEeecCCCCCc-------cccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHh---------CCCCEEEEc
Confidence                  123555555444331       1356899999999863  3667889999999999         779999998


Q ss_pred             Eeec
Q 009871          459 HIFR  462 (523)
Q Consensus       459 ~~~r  462 (523)
                      +...
T Consensus       241 ~sE~  244 (268)
T COG1352         241 HSET  244 (268)
T ss_pred             cCcc
Confidence            7653

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=97.80  E-value=1.9e-05  Score=75.13  Aligned_cols=78  Identities=15%  Similarity=0.197  Sum_probs=61.7

Q ss_pred             CCCCeEEEECCCccccHHHHHhhC-CCCEEEEEeCCHHHHHHHHhccccC--CCcEEEEEeeccCCccCCCC----CCCc
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAY-PDVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISDDLSRQI----SPSS  146 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~-~~~~v~gvD~S~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~~~~~~----~~~~  146 (523)
                      .+.++|||||+++|..+..+++.. ++++|+.+|.+++..+.|+++....  ..+++++.+|+.+. ++.-.    ..++
T Consensus        78 ~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~-L~~l~~~~~~~~~  156 (247)
T PLN02589         78 INAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPV-LDQMIEDGKYHGT  156 (247)
T ss_pred             hCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHH-HHHHHhccccCCc
Confidence            567899999999999999999874 5789999999999999999976433  47899999998652 11101    1368


Q ss_pred             eeEEEE
Q 009871          147 IDIVTM  152 (523)
Q Consensus       147 fD~V~~  152 (523)
                      ||+||.
T Consensus       157 fD~iFi  162 (247)
T PLN02589        157 FDFIFV  162 (247)
T ss_pred             ccEEEe
Confidence            999977

>KOG2940 consensus Predicted methyltransferase [General function prediction only]

Probab=97.79  E-value=4e-05  Score=69.61  Aligned_cols=101  Identities=10%  Similarity=0.162  Sum_probs=78.4

Q ss_pred             CCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCcc
Q 009871          336 GKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFE  415 (523)
Q Consensus       336 ~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~fD  415 (523)
                      ...++|||||.|.+...+...+..+++.+|.|-.|++.++.. +.++       +.+..+ .++.+.+    ++...++|
T Consensus        73 fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~-qdp~-------i~~~~~-v~DEE~L----df~ens~D  139 (325)
T KOG2940|consen   73 FPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDA-QDPS-------IETSYF-VGDEEFL----DFKENSVD  139 (325)
T ss_pred             CcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhcc-CCCc-------eEEEEE-ecchhcc----cccccchh
Confidence            347999999999999999998888999999999999888642 2222       222222 1222222    45678999


Q ss_pred             EEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEE
Q 009871          416 VILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILC  458 (523)
Q Consensus       416 ~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~  458 (523)
                      +||++--+++..+++..+..++..|         +|.|.|+-+
T Consensus       140 LiisSlslHW~NdLPg~m~~ck~~l---------KPDg~Fias  173 (325)
T KOG2940|consen  140 LIISSLSLHWTNDLPGSMIQCKLAL---------KPDGLFIAS  173 (325)
T ss_pred             hhhhhhhhhhhccCchHHHHHHHhc---------CCCccchhH
Confidence            9999999999999999999999999         778888743

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=97.79  E-value=0.00012  Score=73.96  Aligned_cols=75  Identities=20%  Similarity=0.121  Sum_probs=53.8

Q ss_pred             ccchhHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEe
Q 009871          315 MLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKR  394 (523)
Q Consensus       315 ~~W~~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~  394 (523)
                      ..+..+..|.+++.+.....++ +||||-||+|.+++.+|.. +.+|+|+|+++.+++.|++|+..|++.    ++.+..
T Consensus       177 vN~~~~~~l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~-~~~V~gvE~~~~av~~A~~Na~~N~i~----n~~f~~  250 (352)
T PF05958_consen  177 VNPEQNEKLYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKK-AKKVIGVEIVEEAVEDARENAKLNGID----NVEFIR  250 (352)
T ss_dssp             SBHHHHHHHHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCC-SSEEEEEES-HHHHHHHHHHHHHTT------SEEEEE
T ss_pred             CcHHHHHHHHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhh-CCeEEEeeCCHHHHHHHHHHHHHcCCC----cceEEE
Confidence            3445566666666665544444 8999999999888887776 468999999999999999999999984    455554


Q ss_pred             e
Q 009871          395 L  395 (523)
Q Consensus       395 l  395 (523)
                      .
T Consensus       251 ~  251 (352)
T PF05958_consen  251 G  251 (352)
T ss_dssp             -
T ss_pred             e
Confidence            3

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=97.77  E-value=0.00011  Score=68.03  Aligned_cols=112  Identities=16%  Similarity=0.222  Sum_probs=74.9

Q ss_pred             EEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC--CCcEEEEEeeccCCccCCCCCCCc-eeEEEE---
Q 009871           79 VLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISDDLSRQISPSS-IDIVTM---  152 (523)
Q Consensus        79 iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~~~~~~~~~~-fD~V~~---  152 (523)
                      |.||||-.|.+...|++++..-+++++|+++..++.|+++....  ..++++..+|-..     +++++. .|+|+.   
T Consensus         1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~-----~l~~~e~~d~ivIAGM   75 (205)
T PF04816_consen    1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLE-----VLKPGEDVDTIVIAGM   75 (205)
T ss_dssp             EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGG-----G--GGG---EEEEEEE
T ss_pred             CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCccc-----ccCCCCCCCEEEEecC
Confidence            68999999999999999976667999999999999999976432  4689999999653     233443 788877   


Q ss_pred             -----ccccccceee---ecceEEecCCeEEEeeCHHHHHHHHHhCCCcEEEEEeEe
Q 009871          153 -----ERLTGKDQKI---SENFYVRGDGTRAFYFSNDFLTSLFKENGFDVEELGLCC  201 (523)
Q Consensus       153 -----~~~~~~~~~~---~~~~~~~~~g~~~~~~~~~~l~~ll~~~Gf~~~~~~~~~  201 (523)
                           ..++......   ...+.+.|.      .....+++.|.+.||.++....+.
T Consensus        76 GG~lI~~ILe~~~~~~~~~~~lILqP~------~~~~~LR~~L~~~gf~I~~E~lv~  126 (205)
T PF04816_consen   76 GGELIIEILEAGPEKLSSAKRLILQPN------THAYELRRWLYENGFEIIDEDLVE  126 (205)
T ss_dssp             -HHHHHHHHHHTGGGGTT--EEEEEES------S-HHHHHHHHHHTTEEEEEEEEEE
T ss_pred             CHHHHHHHHHhhHHHhccCCeEEEeCC------CChHHHHHHHHHCCCEEEEeEEEe
Confidence                 1111111110   012234433      257789999999999998776554

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=97.75  E-value=0.00028  Score=65.06  Aligned_cols=127  Identities=11%  Similarity=0.046  Sum_probs=83.2

Q ss_pred             eEEEECCCccHHHHHHHhcCC-CEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCccE
Q 009871          338 KVLELGCGCGGICSMVAAGSA-DLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEV  416 (523)
Q Consensus       338 ~VLElG~G~G~l~~~~a~~~~-~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~fD~  416 (523)
                      -+||||||.|.....+|...+ ..++|+|+....+..+...+...++    .++.+...|-...  +..  -++++++|-
T Consensus        20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l----~Nv~~~~~da~~~--l~~--~~~~~~v~~   91 (195)
T PF02390_consen   20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGL----KNVRFLRGDAREL--LRR--LFPPGSVDR   91 (195)
T ss_dssp             EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTT----SSEEEEES-CTTH--HHH--HSTTTSEEE
T ss_pred             eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcc----cceEEEEccHHHH--Hhh--cccCCchhe
Confidence            799999999988888888754 4899999999999999888888765    4566655443321  211  123578998


Q ss_pred             EEEc--cccCCC------CChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhHHHHHHHHc--CCEEEE
Q 009871          417 ILGT--DVSYIP------EAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQC--GFRLVD  482 (523)
Q Consensus       417 Ii~~--d~~y~~------~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~~~~~~~~--gf~~~~  482 (523)
                      |...  |.-...      =.-++++..+.++|         +|||.+.+..-....- ....+.+.+.  +|+...
T Consensus        92 i~i~FPDPWpK~rH~krRl~~~~fl~~~~~~L---------~~gG~l~~~TD~~~y~-~~~~~~~~~~~~~f~~~~  157 (195)
T PF02390_consen   92 IYINFPDPWPKKRHHKRRLVNPEFLELLARVL---------KPGGELYFATDVEEYA-EWMLEQFEESHPGFENIE  157 (195)
T ss_dssp             EEEES-----SGGGGGGSTTSHHHHHHHHHHE---------EEEEEEEEEES-HHHH-HHHHHHHHHHSTTEEEE-
T ss_pred             EEEeCCCCCcccchhhhhcCCchHHHHHHHHc---------CCCCEEEEEeCCHHHH-HHHHHHHHhcCcCeEEcc
Confidence            8765  332211      15678999999999         6799998876442211 2345556663  777663

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=97.75  E-value=7.9e-05  Score=75.35  Aligned_cols=65  Identities=20%  Similarity=0.226  Sum_probs=48.2

Q ss_pred             hhhhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC-CCcEEEEEeeccC
Q 009871           68 GRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT-ETRVSTFVCDLIS  135 (523)
Q Consensus        68 ~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~-~~~v~~~~~d~~~  135 (523)
                      .+++...++ .|||+-||+|.++..|++.+  .+|+|||+++.|++.|++++..+ -.+++|.++++.+
T Consensus       190 ~~~l~~~~~-~vlDlycG~G~fsl~la~~~--~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~  255 (352)
T PF05958_consen  190 LEWLDLSKG-DVLDLYCGVGTFSLPLAKKA--KKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAED  255 (352)
T ss_dssp             HHHCTT-TT-EEEEES-TTTCCHHHHHCCS--SEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHH
T ss_pred             HHHhhcCCC-cEEEEeecCCHHHHHHHhhC--CeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccc
Confidence            345553434 89999999999999999885  45999999999999999988654 3689999988754

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=97.75  E-value=3.5e-05  Score=78.42  Aligned_cols=72  Identities=19%  Similarity=0.200  Sum_probs=57.9

Q ss_pred             CCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCC-CcEEEEEeeccCCccCCCCC-CCceeEEEE
Q 009871           76 RKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQIS-PSSIDIVTM  152 (523)
Q Consensus        76 ~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~-~~~fD~V~~  152 (523)
                      +.+|||++||+|..+..++...+..+|+++|+++.+++.++++...+. .++++.++|+...     +. .++||+|++
T Consensus        58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~-----l~~~~~fD~V~l  131 (382)
T PRK04338         58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANAL-----LHEERKFDVVDI  131 (382)
T ss_pred             CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHH-----HhhcCCCCEEEE
Confidence            468999999999999999887654579999999999999999875432 4567889998653     11 457999977

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=97.75  E-value=6.3e-05  Score=65.71  Aligned_cols=58  Identities=17%  Similarity=0.170  Sum_probs=49.3

Q ss_pred             eEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC-CCcEEEEEeeccC
Q 009871           78 DVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT-ETRVSTFVCDLIS  135 (523)
Q Consensus        78 ~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~-~~~v~~~~~d~~~  135 (523)
                      .+||||||.|..+..+++.++..+|+++|+++.+.+.++++...+ ..++.+++..+.+
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~   59 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGD   59 (143)
T ss_pred             CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeC
Confidence            489999999999999999988889999999999999999876433 2458888877764

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>PLN02823 spermine synthase

Probab=97.74  E-value=7.8e-05  Score=74.37  Aligned_cols=76  Identities=20%  Similarity=0.319  Sum_probs=62.0

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhcccc-----CCCcEEEEEeeccCCccCCCCCCCcee
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDF-----TETRVSTFVCDLISDDLSRQISPSSID  148 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~-----~~~~v~~~~~d~~~~~~~~~~~~~~fD  148 (523)
                      +.+.+||.||+|.|..+..+++..+..+|+.||+++++++.|++....     ..++++++.+|.... +  ...+++||
T Consensus       102 ~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~-L--~~~~~~yD  178 (336)
T PLN02823        102 PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAE-L--EKRDEKFD  178 (336)
T ss_pred             CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHH-H--hhCCCCcc
Confidence            567899999999999999998876556899999999999999987632     247899999998753 1  12356899


Q ss_pred             EEEE
Q 009871          149 IVTM  152 (523)
Q Consensus       149 ~V~~  152 (523)
                      +|++
T Consensus       179 vIi~  182 (336)
T PLN02823        179 VIIG  182 (336)
T ss_pred             EEEe
Confidence            9998

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=97.74  E-value=0.00051  Score=71.67  Aligned_cols=123  Identities=18%  Similarity=0.168  Sum_probs=80.0

Q ss_pred             hhHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcC--CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEee
Q 009871          318 ESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGS--ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRL  395 (523)
Q Consensus       318 ~~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l  395 (523)
                      ++|.+.+..+...+  .+|.+|||++||.|+=+..+|+..  ...|++.|+++.-++.+++|++.-++.    ++.+...
T Consensus        98 ~sS~l~~~~L~~~~--~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~----nv~v~~~  171 (470)
T PRK11933         98 ASSMLPVAALFADD--NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVS----NVALTHF  171 (470)
T ss_pred             HHHHHHHHHhccCC--CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC----eEEEEeC
Confidence            34555555554333  478899999999999999888863  348999999999999999999997663    3444332


Q ss_pred             ecCCCCcchhhhhhcCCCccEEEE----cc--ccCC-C--------C-------ChHHHHHHHHHHhhccCCCCCCCCCc
Q 009871          396 EWGNRDHIEAIKEENNEGFEVILG----TD--VSYI-P--------E-------AILPLFATAKELTASSNKSLREDQQP  453 (523)
Q Consensus       396 dw~~~~~~~~~~~~~~~~fD~Ii~----~d--~~y~-~--------~-------~~~~l~~~l~~ll~~~~~~~~~~~~g  453 (523)
                      |-..   +   ....+..||.|+.    +.  ++.. +        +       .-..++..+.++|         +|||
T Consensus       172 D~~~---~---~~~~~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~L---------kpGG  236 (470)
T PRK11933        172 DGRV---F---GAALPETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHAL---------KPGG  236 (470)
T ss_pred             chhh---h---hhhchhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHc---------CCCc
Confidence            2111   1   1122457999993    21  1111 1        1       1255677777788         6799


Q ss_pred             EEEEEEee
Q 009871          454 AFILCHIF  461 (523)
Q Consensus       454 ~~~l~~~~  461 (523)
                      .++.+...
T Consensus       237 ~LVYSTCT  244 (470)
T PRK11933        237 TLVYSTCT  244 (470)
T ss_pred             EEEEECCC
Confidence            88665443

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=97.73  E-value=0.00015  Score=70.86  Aligned_cols=91  Identities=13%  Similarity=0.016  Sum_probs=71.2

Q ss_pred             hhHHHHhhhhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCcc-CC
Q 009871           62 YLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDL-SR  140 (523)
Q Consensus        62 ~l~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~-~~  140 (523)
                      .+..+.-+.+...++..++|.=||.|.++..+++..++++|+|+|.++.+++.|+++......++.+++++..++.- ..
T Consensus         7 Vll~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~l~~~l~   86 (305)
T TIGR00006         7 VLLDEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFANFFEHLD   86 (305)
T ss_pred             hhHHHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHHHHHHHH
Confidence            46666666666677889999999999999999998766899999999999999998764434689999998875421 00


Q ss_pred             CCCCCceeEEEE
Q 009871          141 QISPSSIDIVTM  152 (523)
Q Consensus       141 ~~~~~~fD~V~~  152 (523)
                      ....+++|.|+.
T Consensus        87 ~~~~~~vDgIl~   98 (305)
T TIGR00006        87 ELLVTKIDGILV   98 (305)
T ss_pred             hcCCCcccEEEE
Confidence            123457999998

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=97.73  E-value=0.00011  Score=75.77  Aligned_cols=82  Identities=22%  Similarity=0.228  Sum_probs=64.9

Q ss_pred             hhhhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCC-CcEEEEEeeccCCccCCCCCCCc
Q 009871           68 GRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQISPSS  146 (523)
Q Consensus        68 ~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~  146 (523)
                      .+++...++.++||+=||.|.+++.|+++.  .+|+|+|+++.+++.|+++++.++ .|++|..+++++.-.. ......
T Consensus       286 ~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~--~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~-~~~~~~  362 (432)
T COG2265         286 LEWLELAGGERVLDLYCGVGTFGLPLAKRV--KKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPA-WWEGYK  362 (432)
T ss_pred             HHHHhhcCCCEEEEeccCCChhhhhhcccC--CEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhh-ccccCC
Confidence            345555677899999999999999999774  559999999999999999986553 5699999999865211 112357


Q ss_pred             eeEEEE
Q 009871          147 IDIVTM  152 (523)
Q Consensus       147 fD~V~~  152 (523)
                      +|+|+.
T Consensus       363 ~d~Vvv  368 (432)
T COG2265         363 PDVVVV  368 (432)
T ss_pred             CCEEEE
Confidence            899998

>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]

Probab=97.70  E-value=0.00019  Score=73.13  Aligned_cols=125  Identities=12%  Similarity=0.135  Sum_probs=80.4

Q ss_pred             hHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecC
Q 009871          319 SAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWG  398 (523)
Q Consensus       319 ~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~  398 (523)
                      ++.+|-.++.++..+..++.+||+-||||.++ ++.+++.++|+++++++++++-|+.|+..|++++    .++..   +
T Consensus       367 ~aevLys~i~e~~~l~~~k~llDv~CGTG~ig-lala~~~~~ViGvEi~~~aV~dA~~nA~~NgisN----a~Fi~---g  438 (534)
T KOG2187|consen  367 AAEVLYSTIGEWAGLPADKTLLDVCCGTGTIG-LALARGVKRVIGVEISPDAVEDAEKNAQINGISN----ATFIV---G  438 (534)
T ss_pred             HHHHHHHHHHHHhCCCCCcEEEEEeecCCcee-hhhhccccceeeeecChhhcchhhhcchhcCccc----eeeee---c
Confidence            56778888888877778899999999999554 4555667899999999999999999999999963    33332   2


Q ss_pred             CCCc-chhhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee
Q 009871          399 NRDH-IEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIF  461 (523)
Q Consensus       399 ~~~~-~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~  461 (523)
                      +++. +..+....-++-++|...|.-- ...+..+++.+...-         .+.-.+|++-..
T Consensus       439 qaE~~~~sl~~~~~~~~~~v~iiDPpR-~Glh~~~ik~l~~~~---------~~~rlvyvSCn~  492 (534)
T KOG2187|consen  439 QAEDLFPSLLTPCCDSETLVAIIDPPR-KGLHMKVIKALRAYK---------NPRRLVYVSCNP  492 (534)
T ss_pred             chhhccchhcccCCCCCceEEEECCCc-ccccHHHHHHHHhcc---------CccceEEEEcCH
Confidence            2221 2111111112445444444332 345566666666554         345555555444

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=97.69  E-value=0.00068  Score=64.63  Aligned_cols=116  Identities=9%  Similarity=0.012  Sum_probs=83.3

Q ss_pred             CCCeEEEECCCccHHHHHHHhcC---CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcC
Q 009871          335 AGKKVLELGCGCGGICSMVAAGS---ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENN  411 (523)
Q Consensus       335 ~~~~VLElG~G~G~l~~~~a~~~---~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~  411 (523)
                      ..-+||||.||.|-...-+....   +.+|+..|+++..++..+.-++.+++.   ..+++...|-.+.+.+..   + .
T Consensus       135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~---~i~~f~~~dAfd~~~l~~---l-~  207 (311)
T PF12147_consen  135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLE---DIARFEQGDAFDRDSLAA---L-D  207 (311)
T ss_pred             CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCc---cceEEEecCCCCHhHhhc---c-C
Confidence            44599999999997665555543   368999999999999999999999886   445777666555433332   2 3


Q ss_pred             CCccEEEEccccCCC---CChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCCh
Q 009871          412 EGFEVILGTDVSYIP---EAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDE  466 (523)
Q Consensus       412 ~~fD~Ii~~d~~y~~---~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~  466 (523)
                      ..++++|.+-++-..   +.+...+.-+..++         .|+|.++.+..++.+..
T Consensus       208 p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al---------~pgG~lIyTgQPwHPQl  256 (311)
T PF12147_consen  208 PAPTLAIVSGLYELFPDNDLVRRSLAGLARAL---------EPGGYLIYTGQPWHPQL  256 (311)
T ss_pred             CCCCEEEEecchhhCCcHHHHHHHHHHHHHHh---------CCCcEEEEcCCCCCcch
Confidence            478999988665332   34666777788888         67999988776544433

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=97.69  E-value=0.0002  Score=63.87  Aligned_cols=83  Identities=7%  Similarity=-0.110  Sum_probs=60.8

Q ss_pred             EEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhh
Q 009871          362 VATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTA  441 (523)
Q Consensus       362 ~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~  441 (523)
                      +++|+|+.||+.|+++....... ...++.+...|-.+.       ++.+++||+|+++.++.+..+...+++.+.++| 
T Consensus         1 ~GvD~S~~ML~~A~~~~~~~~~~-~~~~i~~~~~d~~~l-------p~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvL-   71 (160)
T PLN02232          1 MGLDFSSEQLAVAATRQSLKARS-CYKCIEWIEGDAIDL-------PFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVL-   71 (160)
T ss_pred             CeEcCCHHHHHHHHHhhhccccc-CCCceEEEEechhhC-------CCCCCCeeEEEecchhhcCCCHHHHHHHHHHHc-
Confidence            48999999999998766532211 112455555443321       345678999999998988889999999999999 


Q ss_pred             ccCCCCCCCCCcEEEEEEee
Q 009871          442 SSNKSLREDQQPAFILCHIF  461 (523)
Q Consensus       442 ~~~~~~~~~~~g~~~l~~~~  461 (523)
                              +|||.+++....
T Consensus        72 --------kpGG~l~i~d~~   83 (160)
T PLN02232         72 --------KPGSRVSILDFN   83 (160)
T ss_pred             --------CcCeEEEEEECC
Confidence                    779999877554

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=97.68  E-value=6.9e-05  Score=66.02  Aligned_cols=90  Identities=23%  Similarity=0.296  Sum_probs=63.6

Q ss_pred             CeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCccE
Q 009871          337 KKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEV  416 (523)
Q Consensus       337 ~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~fD~  416 (523)
                      ..+.|||+|+|.+ +++|+..+.+|++++.+|....+|.+|+..++.    .++.+...|-.+-         .-...|+
T Consensus        34 d~~~DLGaGsGiL-s~~Aa~~A~rViAiE~dPk~a~~a~eN~~v~g~----~n~evv~gDA~~y---------~fe~ADv   99 (252)
T COG4076          34 DTFADLGAGSGIL-SVVAAHAAERVIAIEKDPKRARLAEENLHVPGD----VNWEVVVGDARDY---------DFENADV   99 (252)
T ss_pred             hceeeccCCcchH-HHHHHhhhceEEEEecCcHHHHHhhhcCCCCCC----cceEEEecccccc---------cccccce
Confidence            5799999999954 555666688999999999999999999877665    3555554433222         1135688


Q ss_pred             EEEc--cccCCCCChHHHHHHHHHHh
Q 009871          417 ILGT--DVSYIPEAILPLFATAKELT  440 (523)
Q Consensus       417 Ii~~--d~~y~~~~~~~l~~~l~~ll  440 (523)
                      |+|-  |...-.+...+.++.+-.+|
T Consensus       100 vicEmlDTaLi~E~qVpV~n~vleFL  125 (252)
T COG4076         100 VICEMLDTALIEEKQVPVINAVLEFL  125 (252)
T ss_pred             eHHHHhhHHhhcccccHHHHHHHHHh
Confidence            8864  44444555666777777777

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=97.67  E-value=4.6e-05  Score=76.94  Aligned_cols=77  Identities=17%  Similarity=0.122  Sum_probs=60.1

Q ss_pred             CCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCC---CcEEEEEeeccCCccCCCCCCCceeEEE
Q 009871           75 GRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE---TRVSTFVCDLISDDLSRQISPSSIDIVT  151 (523)
Q Consensus        75 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~---~~v~~~~~d~~~~~~~~~~~~~~fD~V~  151 (523)
                      .+++|||+=|=||..+.+.+..+ ..+||+||+|..+|+.|++|...++   .+..|+++|+.+.=-...-...+||+|+
T Consensus       217 ~GkrvLNlFsYTGgfSv~Aa~gG-A~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIi  295 (393)
T COG1092         217 AGKRVLNLFSYTGGFSVHAALGG-ASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLII  295 (393)
T ss_pred             cCCeEEEecccCcHHHHHHHhcC-CCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEE
Confidence            48999999999999999988773 2279999999999999999876543   5689999998642000011245899999


Q ss_pred             E
Q 009871          152 M  152 (523)
Q Consensus       152 ~  152 (523)
                      +
T Consensus       296 l  296 (393)
T COG1092         296 L  296 (393)
T ss_pred             E
Confidence            9

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=97.67  E-value=0.00018  Score=66.51  Aligned_cols=120  Identities=20%  Similarity=0.124  Sum_probs=79.1

Q ss_pred             CCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhcccc-CCCcEEEEEeeccCCccCCCCCCCc-eeEEEEc
Q 009871           76 RKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDF-TETRVSTFVCDLISDDLSRQISPSS-IDIVTME  153 (523)
Q Consensus        76 ~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~-~~~~v~~~~~d~~~~~~~~~~~~~~-fD~V~~~  153 (523)
                      +.+++|||+|.|.-+.+|+=.+|+.+|+-+|...+-+...+.-... +-.+++++++-+++..     +... ||+|++.
T Consensus        68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~-----~~~~~~D~vtsR  142 (215)
T COG0357          68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFG-----QEKKQYDVVTSR  142 (215)
T ss_pred             CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcc-----cccccCcEEEee
Confidence            6899999999999999999778999999999999887777664432 3367999999998651     1122 9999992


Q ss_pred             cccccceeeec--ceEEecCCeEEEe-e-----CHHHHHHHHHhCCCcEEEEEeEe
Q 009871          154 RLTGKDQKISE--NFYVRGDGTRAFY-F-----SNDFLTSLFKENGFDVEELGLCC  201 (523)
Q Consensus       154 ~~~~~~~~~~~--~~~~~~~g~~~~~-~-----~~~~l~~ll~~~Gf~~~~~~~~~  201 (523)
                      .+ .....+.+  .-+++.+|.+..+ +     ...+........|+.+.++....
T Consensus       143 Av-a~L~~l~e~~~pllk~~g~~~~~k~~~~~~e~~e~~~a~~~~~~~~~~~~~~~  197 (215)
T COG0357         143 AV-ASLNVLLELCLPLLKVGGGFLAYKGLAGKDELPEAEKAILPLGGQVEKVFSLT  197 (215)
T ss_pred             hc-cchHHHHHHHHHhcccCCcchhhhHHhhhhhHHHHHHHHHhhcCcEEEEEEee
Confidence            22 11111100  0145555554321 1     23445666666778877665443

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=97.67  E-value=0.00046  Score=63.37  Aligned_cols=122  Identities=20%  Similarity=0.272  Sum_probs=76.2

Q ss_pred             hcCCCCCeEEEECCCccccHHHHHhh-CCCCEEEEEeCCHH----HHHHHHhccccCCCcEEEEEeeccCCccCCCCCCC
Q 009871           71 FSGAGRKDVLEVGCGAGNTIFPLIAA-YPDVFVYACDFSPR----AVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPS  145 (523)
Q Consensus        71 ~~~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~v~gvD~S~~----~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  145 (523)
                      ++..++.+||-+|..+|.+..+++.- .+...|+||++|+.    .+..|+++     .|+--+..|+.....-..+ -+
T Consensus        69 ~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R-----~NIiPIl~DAr~P~~Y~~l-v~  142 (229)
T PF01269_consen   69 IPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR-----PNIIPILEDARHPEKYRML-VE  142 (229)
T ss_dssp             -S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS-----TTEEEEES-TTSGGGGTTT-S-
T ss_pred             cCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC-----CceeeeeccCCChHHhhcc-cc
Confidence            34468899999999999999999998 66889999999995    45666665     6788889999753221122 24


Q ss_pred             ceeEEEE-ccccccceeeec--ceEEecCCeEEEee---------CHH----HHHHHHHhCCCcEEEEE
Q 009871          146 SIDIVTM-ERLTGKDQKISE--NFYVRGDGTRAFYF---------SND----FLTSLFKENGFDVEELG  198 (523)
Q Consensus       146 ~fD~V~~-~~~~~~~~~~~~--~~~~~~~g~~~~~~---------~~~----~l~~ll~~~Gf~~~~~~  198 (523)
                      .+|+|++ ..-......+..  ..+++++|.++...         .++    +-.+.|++.||++.+..
T Consensus       143 ~VDvI~~DVaQp~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~~vf~~e~~~L~~~~~~~~e~i  211 (229)
T PF01269_consen  143 MVDVIFQDVAQPDQARIAALNARHFLKPGGHLIISIKARSIDSTADPEEVFAEEVKKLKEEGFKPLEQI  211 (229)
T ss_dssp             -EEEEEEE-SSTTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred             cccEEEecCCChHHHHHHHHHHHhhccCCcEEEEEEecCcccCcCCHHHHHHHHHHHHHHcCCChheEe
Confidence            8999999 000000011111  13678888776543         122    23556677889986553

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]

Probab=97.65  E-value=5.9e-05  Score=76.83  Aligned_cols=71  Identities=21%  Similarity=0.273  Sum_probs=59.5

Q ss_pred             hHHHHhhhhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC-CCcEEEEEeeccC
Q 009871           63 LDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT-ETRVSTFVCDLIS  135 (523)
Q Consensus        63 l~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~-~~~v~~~~~d~~~  135 (523)
                      +...+.++...+.+..+||+.||||.++..+++...  .|+||+++++++.-|+.++..+ ..|.+|+++-+++
T Consensus       371 Lys~i~e~~~l~~~k~llDv~CGTG~iglala~~~~--~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~  442 (534)
T KOG2187|consen  371 LYSTIGEWAGLPADKTLLDVCCGTGTIGLALARGVK--RVIGVEISPDAVEDAEKNAQINGISNATFIVGQAED  442 (534)
T ss_pred             HHHHHHHHhCCCCCcEEEEEeecCCceehhhhcccc--ceeeeecChhhcchhhhcchhcCccceeeeecchhh
Confidence            445556677767889999999999999999998854  4999999999999999998655 4789999996654

>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]

Probab=97.65  E-value=0.00076  Score=63.30  Aligned_cols=125  Identities=19%  Similarity=0.207  Sum_probs=87.6

Q ss_pred             hcCCCCCeEEEECCCccccHHHHHhh-CCCCEEEEEeCCHHHHHHHHhcccc--CCCcEEEEEeeccCCccCCCCCCCce
Q 009871           71 FSGAGRKDVLEVGCGAGNTIFPLIAA-YPDVFVYACDFSPRAVNLVMTHKDF--TETRVSTFVCDLISDDLSRQISPSSI  147 (523)
Q Consensus        71 ~~~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~v~gvD~S~~~l~~a~~~~~~--~~~~v~~~~~d~~~~~~~~~~~~~~f  147 (523)
                      +...++.+|||-|.|+|.++.++++. .|..+++.+|+.+.-.+.|++..+.  -+.++.+.+-|+....+.  ..+..+
T Consensus       101 L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~--~ks~~a  178 (314)
T KOG2915|consen  101 LEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFL--IKSLKA  178 (314)
T ss_pred             hcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCcc--cccccc
Confidence            44578999999999999999999998 7888999999999988888886543  357899999999876443  336789


Q ss_pred             eEEEEccccccceeeec-ceEEecCCeEEEeeCH--HH---HHHHHHhCCCcEEEEE
Q 009871          148 DIVTMERLTGKDQKISE-NFYVRGDGTRAFYFSN--DF---LTSLFKENGFDVEELG  198 (523)
Q Consensus       148 D~V~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~--~~---l~~ll~~~Gf~~~~~~  198 (523)
                      |+|+. ++..++..+.- .-.++.+|.+..-|++  |+   -.++|.+.||..++..
T Consensus       179 DaVFL-DlPaPw~AiPha~~~lk~~g~r~csFSPCIEQvqrtce~l~~~gf~~i~~v  234 (314)
T KOG2915|consen  179 DAVFL-DLPAPWEAIPHAAKILKDEGGRLCSFSPCIEQVQRTCEALRSLGFIEIETV  234 (314)
T ss_pred             ceEEE-cCCChhhhhhhhHHHhhhcCceEEeccHHHHHHHHHHHHHHhCCCceEEEE
Confidence            99998 11122211110 0034555655554543  33   4566778899865543

>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.64  E-value=8.9e-05  Score=70.60  Aligned_cols=142  Identities=13%  Similarity=0.077  Sum_probs=85.4

Q ss_pred             CCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCC-------------CC-----------CC
Q 009871          333 IVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKP-------------PF-----------LA  388 (523)
Q Consensus       333 ~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~-------------~~-----------~~  388 (523)
                      ..+|.++||+|||.-....+.|.....+|+++|..+.-++.+++=+...+.-             ..           ..
T Consensus        54 ~~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~  133 (256)
T PF01234_consen   54 GVKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRR  133 (256)
T ss_dssp             SS-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHH
T ss_pred             CcCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHH
Confidence            3578899999999976655556667789999999998777666543322110             00           01


Q ss_pred             ce-EEEeeecCCCCcchhhhhhcCCCccEEEEccccCC----CCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec-
Q 009871          389 KL-ITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYI----PEAILPLFATAKELTASSNKSLREDQQPAFILCHIFR-  462 (523)
Q Consensus       389 ~v-~~~~ldw~~~~~~~~~~~~~~~~fD~Ii~~d~~y~----~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r-  462 (523)
                      .| .+...|..+...+.....+ +.+||+|+++=|+-.    .+.+...++.+.++|         +|||.++++.... 
T Consensus       134 ~Vk~Vv~cDV~~~~pl~~~~~~-p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lL---------kpGG~Lil~~~l~~  203 (256)
T PF01234_consen  134 AVKQVVPCDVTQPNPLDPPVVL-PPKFDCVISSFCLESACKDLDEYRRALRNISSLL---------KPGGHLILAGVLGS  203 (256)
T ss_dssp             HEEEEEE--TTSSSTTTTS-SS--SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTE---------EEEEEEEEEEESS-
T ss_pred             hhceEEEeeccCCCCCCccccC-ccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHc---------CCCcEEEEEEEcCc
Confidence            12 2444455444333220011 236999998855532    345666666666777         6799999876653 


Q ss_pred             -------------CCChhHHHHHHHHcCCEEEEEc
Q 009871          463 -------------QVDEPSMLSAATQCGFRLVDKW  484 (523)
Q Consensus       463 -------------~~~~~~~~~~~~~~gf~~~~~~  484 (523)
                                   ..+++.+.+.++++||.+.+.-
T Consensus       204 t~Y~vG~~~F~~l~l~ee~v~~al~~aG~~i~~~~  238 (256)
T PF01234_consen  204 TYYMVGGHKFPCLPLNEEFVREALEEAGFDIEDLE  238 (256)
T ss_dssp             SEEEETTEEEE---B-HHHHHHHHHHTTEEEEEEE
T ss_pred             eeEEECCEecccccCCHHHHHHHHHHcCCEEEecc
Confidence                         2355677888999999998776

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=97.63  E-value=0.0002  Score=66.19  Aligned_cols=115  Identities=16%  Similarity=0.155  Sum_probs=58.2

Q ss_pred             CCcccccchhHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhc-CCCEEEEEcCChHHHHHHHHHHHhcC-----C
Q 009871          310 RSTGLMLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAG-SADLVVATDGDSIALDLLAQNVTANL-----K  383 (523)
Q Consensus       310 ~~~G~~~W~~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~-~~~~V~~~D~~~~~l~~~~~n~~~n~-----~  383 (523)
                      ...|-..+..   +++.+. ...+.++...+|||||.|-+...+|.. +..+++|+++.+...+.++.+.+...     .
T Consensus        21 ~~YGEi~~~~---~~~il~-~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~   96 (205)
T PF08123_consen   21 ETYGEISPEF---VSKILD-ELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHY   96 (205)
T ss_dssp             CCGGGCHHHH---HHHHHH-HTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHC
T ss_pred             cceeecCHHH---HHHHHH-HhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHh
Confidence            3445444433   333332 234567889999999999766666554 67789999999988877765443211     1


Q ss_pred             CCCCCceEEEeeecCCCCcchhhhhhcCCCccEEEEccccCCCCChHHH
Q 009871          384 PPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPL  432 (523)
Q Consensus       384 ~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l  432 (523)
                      .....++.+...|..+.+....+    -..-|+|+++...|.++....|
T Consensus        97 g~~~~~v~l~~gdfl~~~~~~~~----~s~AdvVf~Nn~~F~~~l~~~L  141 (205)
T PF08123_consen   97 GKRPGKVELIHGDFLDPDFVKDI----WSDADVVFVNNTCFDPDLNLAL  141 (205)
T ss_dssp             TB---EEEEECS-TTTHHHHHHH----GHC-SEEEE--TTT-HHHHHHH
T ss_pred             hcccccceeeccCccccHhHhhh----hcCCCEEEEeccccCHHHHHHH
Confidence            11124555555554433211111    1357999999988866544433

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=97.61  E-value=0.0015  Score=65.24  Aligned_cols=107  Identities=19%  Similarity=0.145  Sum_probs=76.4

Q ss_pred             HHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCC----------------------------------------EEE
Q 009871          323 MAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSAD----------------------------------------LVV  362 (523)
Q Consensus       323 la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~----------------------------------------~V~  362 (523)
                      ||..|.......++..++|-=||+|-+++.+|..+..                                        .++
T Consensus       179 LAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~  258 (381)
T COG0116         179 LAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIY  258 (381)
T ss_pred             HHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEE
Confidence            4555554445556789999999999888888776531                                        377


Q ss_pred             EEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCccEEEEccccCC-----CC----ChHHHH
Q 009871          363 ATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYI-----PE----AILPLF  433 (523)
Q Consensus       363 ~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~fD~Ii~~d~~y~-----~~----~~~~l~  433 (523)
                      ++|+++.+++.|+.|++..++.   +.|.+...|..+-..     +  .+.+|+||++.. |.     ..    .+..+.
T Consensus       259 G~Did~r~i~~Ak~NA~~AGv~---d~I~f~~~d~~~l~~-----~--~~~~gvvI~NPP-YGeRlg~~~~v~~LY~~fg  327 (381)
T COG0116         259 GSDIDPRHIEGAKANARAAGVG---DLIEFKQADATDLKE-----P--LEEYGVVISNPP-YGERLGSEALVAKLYREFG  327 (381)
T ss_pred             EecCCHHHHHHHHHHHHhcCCC---ceEEEEEcchhhCCC-----C--CCcCCEEEeCCC-cchhcCChhhHHHHHHHHH
Confidence            9999999999999999999987   667777666544311     1  158999999754 43     21    344566


Q ss_pred             HHHHHHh
Q 009871          434 ATAKELT  440 (523)
Q Consensus       434 ~~l~~ll  440 (523)
                      +++++.+
T Consensus       328 ~~lk~~~  334 (381)
T COG0116         328 RTLKRLL  334 (381)
T ss_pred             HHHHHHh
Confidence            6666666

>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]

Probab=97.59  E-value=4.1e-05  Score=68.47  Aligned_cols=135  Identities=18%  Similarity=0.240  Sum_probs=89.9

Q ss_pred             HHHHHHhcC-CCC-CCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCC
Q 009871          322 LMAAVLARN-PTI-VAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGN  399 (523)
Q Consensus       322 ~la~~l~~~-~~~-~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~  399 (523)
                      -+.++|... |.. ....++||||+|-|-++..++-. ..+|.+|++|..|...++..    +     -+ -...++|.+
T Consensus        97 QF~klL~i~~p~w~~~~~~lLDlGAGdGeit~~m~p~-feevyATElS~tMr~rL~kk----~-----yn-Vl~~~ew~~  165 (288)
T KOG3987|consen   97 QFRKLLVIGGPAWGQEPVTLLDLGAGDGEITLRMAPT-FEEVYATELSWTMRDRLKKK----N-----YN-VLTEIEWLQ  165 (288)
T ss_pred             HHHHHHhcCCCccCCCCeeEEeccCCCcchhhhhcch-HHHHHHHHhhHHHHHHHhhc----C-----Cc-eeeehhhhh
Confidence            345555544 222 13479999999999877766554 34699999999888777541    0     11 123456765


Q ss_pred             CCcchhhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee---------------cC-
Q 009871          400 RDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIF---------------RQ-  463 (523)
Q Consensus       400 ~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~---------------r~-  463 (523)
                      .          +-+||+|.|-.++-...+.-.|++-+...| +|+       .|.++++-..               |+ 
T Consensus       166 t----------~~k~dli~clNlLDRc~~p~kLL~Di~~vl-~ps-------ngrvivaLVLP~~hYVE~N~~g~~~rPd  227 (288)
T KOG3987|consen  166 T----------DVKLDLILCLNLLDRCFDPFKLLEDIHLVL-APS-------NGRVIVALVLPYMHYVETNTSGLPLRPD  227 (288)
T ss_pred             c----------CceeehHHHHHHHHhhcChHHHHHHHHHHh-ccC-------CCcEEEEEEecccceeecCCCCCcCCch
Confidence            4          348999999888777777888999999999 332       6666654332               11 


Q ss_pred             ---------CC--hhHHHHHHHHcCCEEEEEcC
Q 009871          464 ---------VD--EPSMLSAATQCGFRLVDKWP  485 (523)
Q Consensus       464 ---------~~--~~~~~~~~~~~gf~~~~~~~  485 (523)
                               ..  ...|.+.++++||.++.-.+
T Consensus       228 n~Le~~Gr~~ee~v~~~~e~lr~~g~~veawTr  260 (288)
T KOG3987|consen  228 NLLENNGRSFEEEVARFMELLRNCGYRVEAWTR  260 (288)
T ss_pred             HHHHhcCccHHHHHHHHHHHHHhcCchhhhhhc
Confidence                     11  13567888999999876554

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=97.59  E-value=0.00027  Score=61.71  Aligned_cols=59  Identities=25%  Similarity=0.352  Sum_probs=48.7

Q ss_pred             eEEEECCCccHHHHHHHhcCCC-EEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCC
Q 009871          338 KVLELGCGCGGICSMVAAGSAD-LVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNR  400 (523)
Q Consensus       338 ~VLElG~G~G~l~~~~a~~~~~-~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~  400 (523)
                      .|||+|||.|..+..++..++. +|+++|.+|.+.+.+++|++.|+..    ++.+....+++.
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~----~v~~~~~al~~~   60 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLP----NVVLLNAAVGDR   60 (143)
T ss_pred             CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCC----cEEEEEeeeeCC
Confidence            4899999999888888877654 8999999999999999999998763    366666666554

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.58  E-value=0.0014  Score=59.85  Aligned_cols=141  Identities=19%  Similarity=0.199  Sum_probs=93.0

Q ss_pred             hHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCC--EEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeee
Q 009871          319 SAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSAD--LVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLE  396 (523)
Q Consensus       319 ~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~--~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ld  396 (523)
                      |+.-|.+...++.-+.++.+|+||||-.|+.+-.++++...  .|+++|+.|--               ....|.+.+.|
T Consensus        29 Aa~KL~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~---------------~~~~V~~iq~d   93 (205)
T COG0293          29 AAYKLLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK---------------PIPGVIFLQGD   93 (205)
T ss_pred             HHHHHHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc---------------cCCCceEEeee
Confidence            56677777777755557789999999999998888887433  59999998721               12347788888


Q ss_pred             cCCCCcchhhhhh-cCCCccEEEEccccCC-----C-C------ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecC
Q 009871          397 WGNRDHIEAIKEE-NNEGFEVILGTDVSYI-----P-E------AILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ  463 (523)
Q Consensus       397 w~~~~~~~~~~~~-~~~~fD~Ii~~d~~y~-----~-~------~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~  463 (523)
                      ....+..+.+... ....+|+|++ |.--.     . +      .....+......|         +++|.+++-... .
T Consensus        94 ~~~~~~~~~l~~~l~~~~~DvV~s-D~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL---------~~~G~fv~K~fq-g  162 (205)
T COG0293          94 ITDEDTLEKLLEALGGAPVDVVLS-DMAPNTSGNRSVDHARSMYLCELALEFALEVL---------KPGGSFVAKVFQ-G  162 (205)
T ss_pred             ccCccHHHHHHHHcCCCCcceEEe-cCCCCcCCCccccHHHHHHHHHHHHHHHHHee---------CCCCeEEEEEEe-C
Confidence            8888776666543 3445699995 32221     1 1      2223334444556         568888776544 5


Q ss_pred             CChhHHHHHHHHcCCEEEEEcCC
Q 009871          464 VDEPSMLSAATQCGFRLVDKWPS  486 (523)
Q Consensus       464 ~~~~~~~~~~~~~gf~~~~~~~~  486 (523)
                      .+.+.++..+++. |+..++..+
T Consensus       163 ~~~~~~l~~~~~~-F~~v~~~KP  184 (205)
T COG0293         163 EDFEDLLKALRRL-FRKVKIFKP  184 (205)
T ss_pred             CCHHHHHHHHHHh-hceeEEecC
Confidence            5667788877664 776666554

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=97.55  E-value=0.00081  Score=62.25  Aligned_cols=120  Identities=14%  Similarity=0.153  Sum_probs=76.7

Q ss_pred             EEEECCCccHHHHHHHhcCCC-EEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCC-CccE
Q 009871          339 VLELGCGCGGICSMVAAGSAD-LVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNE-GFEV  416 (523)
Q Consensus       339 VLElG~G~G~l~~~~a~~~~~-~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~-~fD~  416 (523)
                      |.|+||-=|.++..+++.+.. +|+++|+++.-++.|+.|+..+++.   .++.+...|     -+.   .+.++ ..|+
T Consensus         1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~---~~i~~rlgd-----GL~---~l~~~e~~d~   69 (205)
T PF04816_consen    1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLE---DRIEVRLGD-----GLE---VLKPGEDVDT   69 (205)
T ss_dssp             EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-T---TTEEEEE-S-----GGG---G--GGG---E
T ss_pred             CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCc---ccEEEEECC-----ccc---ccCCCCCCCE
Confidence            689999999999999999754 7999999999999999999998876   567665432     122   22233 3788


Q ss_pred             EEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhHHHHHHHHcCCEEEEE
Q 009871          417 ILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLVDK  483 (523)
Q Consensus       417 Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~~~~~~~~gf~~~~~  483 (523)
                      |+.+-+--  ..+..++......+         .....++++...   ....+...+.++||.+.+-
T Consensus        70 ivIAGMGG--~lI~~ILe~~~~~~---------~~~~~lILqP~~---~~~~LR~~L~~~gf~I~~E  122 (205)
T PF04816_consen   70 IVIAGMGG--ELIIEILEAGPEKL---------SSAKRLILQPNT---HAYELRRWLYENGFEIIDE  122 (205)
T ss_dssp             EEEEEE-H--HHHHHHHHHTGGGG---------TT--EEEEEESS----HHHHHHHHHHTTEEEEEE
T ss_pred             EEEecCCH--HHHHHHHHhhHHHh---------ccCCeEEEeCCC---ChHHHHHHHHHCCCEEEEe
Confidence            88663321  22333333333333         224477776533   4567888899999998764

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=97.53  E-value=0.00039  Score=67.90  Aligned_cols=63  Identities=13%  Similarity=0.149  Sum_probs=48.1

Q ss_pred             cCCCCCCCCeEEEECCCccHHHHHHHhcCC--CEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeec
Q 009871          329 RNPTIVAGKKVLELGCGCGGICSMVAAGSA--DLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEW  397 (523)
Q Consensus       329 ~~~~~~~~~~VLElG~G~G~l~~~~a~~~~--~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw  397 (523)
                      +.....++..+||.+||.|+.+..++....  .+|+++|.|++|++.+++++..      ..++.+...+.
T Consensus        13 ~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~------~~ri~~i~~~f   77 (296)
T PRK00050         13 DALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP------FGRFTLVHGNF   77 (296)
T ss_pred             HhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc------CCcEEEEeCCH
Confidence            333345678999999999999999998853  6899999999999999987643      13555554443

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=97.53  E-value=0.00051  Score=66.65  Aligned_cols=72  Identities=19%  Similarity=0.188  Sum_probs=58.1

Q ss_pred             HHHhhhhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccC
Q 009871           65 KEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLS  139 (523)
Q Consensus        65 ~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~  139 (523)
                      +.+.+.+...++..|||||+|+|.++..|++..  .+|+++|+++.+++..+++.. ...+++++.+|+.+.+.+
T Consensus        20 ~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~--~~v~~vE~d~~~~~~L~~~~~-~~~~~~vi~~D~l~~~~~   91 (262)
T PF00398_consen   20 DKIVDALDLSEGDTVLEIGPGPGALTRELLKRG--KRVIAVEIDPDLAKHLKERFA-SNPNVEVINGDFLKWDLY   91 (262)
T ss_dssp             HHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS--SEEEEEESSHHHHHHHHHHCT-TCSSEEEEES-TTTSCGG
T ss_pred             HHHHHhcCCCCCCEEEEeCCCCccchhhHhccc--CcceeecCcHhHHHHHHHHhh-hcccceeeecchhccccH
Confidence            344444554678999999999999999999995  679999999999999998654 457899999999977543

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=97.53  E-value=0.0011  Score=63.62  Aligned_cols=132  Identities=14%  Similarity=0.092  Sum_probs=82.1

Q ss_pred             CCCeEEEECCCccHHHHHHHhcC-CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCC-
Q 009871          335 AGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNE-  412 (523)
Q Consensus       335 ~~~~VLElG~G~G~l~~~~a~~~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~-  412 (523)
                      +.++||=||-|.|+.+..+.+.. ..+|+++|+++.+++.+++-+..........++++..-|     ...-++.. .. 
T Consensus        76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~D-----g~~~l~~~-~~~  149 (246)
T PF01564_consen   76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGD-----GRKFLKET-QEE  149 (246)
T ss_dssp             ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEEST-----HHHHHHTS-SST
T ss_pred             CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhh-----hHHHHHhc-cCC
Confidence            56899999999998888877764 569999999999999999866543322223566654322     11112222 34 


Q ss_pred             CccEEEEccccCC---C--CChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhH---HHHHHHHcCCEEEE
Q 009871          413 GFEVILGTDVSYI---P--EAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPS---MLSAATQCGFRLVD  482 (523)
Q Consensus       413 ~fD~Ii~~d~~y~---~--~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~---~~~~~~~~gf~~~~  482 (523)
                      +||+|+. |+.-.   .  -.-.++++.+++.|         +|+|.+++-..........   +...+++....+..
T Consensus       150 ~yDvIi~-D~~dp~~~~~~l~t~ef~~~~~~~L---------~~~Gv~v~~~~~~~~~~~~~~~i~~tl~~~F~~v~~  217 (246)
T PF01564_consen  150 KYDVIIV-DLTDPDGPAPNLFTREFYQLCKRRL---------KPDGVLVLQAGSPFLHPELFKSILKTLRSVFPQVKP  217 (246)
T ss_dssp             -EEEEEE-ESSSTTSCGGGGSSHHHHHHHHHHE---------EEEEEEEEEEEETTTTHHHHHHHHHHHHTTSSEEEE
T ss_pred             cccEEEE-eCCCCCCCcccccCHHHHHHHHhhc---------CCCcEEEEEccCcccchHHHHHHHHHHHHhCCceEE
Confidence            8999997 33221   1  12468899999999         6689888765443444333   34455666554443

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=97.52  E-value=0.00021  Score=64.46  Aligned_cols=76  Identities=17%  Similarity=0.121  Sum_probs=60.8

Q ss_pred             CCCCCeEEEECCCccccHHHHHhh--CCCCEEEEEeCCHHHHHHHHhcccc-----------CCCcEEEEEeeccCCccC
Q 009871           73 GAGRKDVLEVGCGAGNTIFPLIAA--YPDVFVYACDFSPRAVNLVMTHKDF-----------TETRVSTFVCDLISDDLS  139 (523)
Q Consensus        73 ~~~~~~iLDiGcG~G~~~~~l~~~--~~~~~v~gvD~S~~~l~~a~~~~~~-----------~~~~v~~~~~d~~~~~~~  139 (523)
                      ..++.+.||+|.|+|.++..+++.  .++..++|||.-++.++.++++...           ...++.++++|....   
T Consensus        80 L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g---  156 (237)
T KOG1661|consen   80 LQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKG---  156 (237)
T ss_pred             hccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCcccc---
Confidence            468899999999999999888766  3444459999999999999997632           125788999999876   


Q ss_pred             CCCCCCceeEEEE
Q 009871          140 RQISPSSIDIVTM  152 (523)
Q Consensus       140 ~~~~~~~fD~V~~  152 (523)
                       .-+...||.|.+
T Consensus       157 -~~e~a~YDaIhv  168 (237)
T KOG1661|consen  157 -YAEQAPYDAIHV  168 (237)
T ss_pred             -CCccCCcceEEE
Confidence             445678999987

>PHA01634 hypothetical protein

Probab=97.52  E-value=0.00048  Score=56.83  Aligned_cols=72  Identities=15%  Similarity=0.189  Sum_probs=57.2

Q ss_pred             CCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCC
Q 009871          334 VAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG  413 (523)
Q Consensus       334 ~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~  413 (523)
                      +++++|+|+|++.|.-++.++.+|+++|++.+.++...+.+++|++.|.+-.   +. +....|...          -++
T Consensus        27 vk~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~nnI~D---K~-v~~~eW~~~----------Y~~   92 (156)
T PHA01634         27 VYQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYFNICD---KA-VMKGEWNGE----------YED   92 (156)
T ss_pred             ecCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhheeee---ce-eeccccccc----------CCC
Confidence            5899999999999988889999999999999999999999999999986631   11 222367542          257


Q ss_pred             ccEEEE
Q 009871          414 FEVILG  419 (523)
Q Consensus       414 fD~Ii~  419 (523)
                      ||+.+.
T Consensus        93 ~Di~~i   98 (156)
T PHA01634         93 VDIFVM   98 (156)
T ss_pred             cceEEE
Confidence            887664

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=97.49  E-value=0.0022  Score=59.01  Aligned_cols=152  Identities=21%  Similarity=0.267  Sum_probs=91.4

Q ss_pred             ccccchhHH-HHHHHHhc---CCCCCCCCeEEEECCCccHHHHHHHhc-C-CCEEEEEcCChHHHHHHHHHHHhcCCCCC
Q 009871          313 GLMLWESAH-LMAAVLAR---NPTIVAGKKVLELGCGCGGICSMVAAG-S-ADLVVATDGDSIALDLLAQNVTANLKPPF  386 (523)
Q Consensus       313 G~~~W~~a~-~la~~l~~---~~~~~~~~~VLElG~G~G~l~~~~a~~-~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~  386 (523)
                      +.++|+.-. -||..+..   +..+.+|.+||=||+.+|...+.++.- + ...|++++.++...+.+-.=++. .    
T Consensus        47 eYR~W~P~RSKLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~-R----  121 (229)
T PF01269_consen   47 EYRVWNPFRSKLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKK-R----  121 (229)
T ss_dssp             EEEEE-TTT-HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH-S----
T ss_pred             ceeecCchhhHHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhcc-C----
Confidence            577886543 25555543   345678999999999999777777765 4 44899999999665444321221 1    


Q ss_pred             CCceEEEeeecCCCCcchhhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCCh
Q 009871          387 LAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDE  466 (523)
Q Consensus       387 ~~~v~~~~ldw~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~  466 (523)
                       .++--..   +++........+ -+..|+|++ |+- .++...-++..+..+|         +++|.++++...|..+.
T Consensus       122 -~NIiPIl---~DAr~P~~Y~~l-v~~VDvI~~-DVa-Qp~Qa~I~~~Na~~fL---------k~gG~~~i~iKa~siD~  185 (229)
T PF01269_consen  122 -PNIIPIL---EDARHPEKYRML-VEMVDVIFQ-DVA-QPDQARIAALNARHFL---------KPGGHLIISIKARSIDS  185 (229)
T ss_dssp             -TTEEEEE---S-TTSGGGGTTT-S--EEEEEE-E-S-STTHHHHHHHHHHHHE---------EEEEEEEEEEEHHHH-S
T ss_pred             -Cceeeee---ccCCChHHhhcc-cccccEEEe-cCC-ChHHHHHHHHHHHhhc---------cCCcEEEEEEecCcccC
Confidence             1222221   222222222233 238899887 555 5677888899999999         66999999988875432


Q ss_pred             ----hHH----HHHHHHcCCEEEEEcC
Q 009871          467 ----PSM----LSAATQCGFRLVDKWP  485 (523)
Q Consensus       467 ----~~~----~~~~~~~gf~~~~~~~  485 (523)
                          ..+    .+.+++.||++.+...
T Consensus       186 t~~p~~vf~~e~~~L~~~~~~~~e~i~  212 (229)
T PF01269_consen  186 TADPEEVFAEEVKKLKEEGFKPLEQIT  212 (229)
T ss_dssp             SSSHHHHHHHHHHHHHCTTCEEEEEEE
T ss_pred             cCCHHHHHHHHHHHHHHcCCChheEec
Confidence                222    3456677999977643

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=97.48  E-value=0.00069  Score=63.58  Aligned_cols=96  Identities=19%  Similarity=0.248  Sum_probs=66.7

Q ss_pred             CcccccchhHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCce
Q 009871          311 STGLMLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKL  390 (523)
Q Consensus       311 ~~G~~~W~~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v  390 (523)
                      +.|..+-.-..++...+ ....+.++..|||+|-|||.++..+...+ ++|+++++||.|+..+++.++.-..   .+.+
T Consensus        35 d~GQHilkNp~v~~~I~-~ka~~k~tD~VLEvGPGTGnLT~~lLe~~-kkVvA~E~Dprmvael~krv~gtp~---~~kL  109 (315)
T KOG0820|consen   35 DFGQHILKNPLVIDQIV-EKADLKPTDVVLEVGPGTGNLTVKLLEAG-KKVVAVEIDPRMVAELEKRVQGTPK---SGKL  109 (315)
T ss_pred             ccchhhhcCHHHHHHHH-hccCCCCCCEEEEeCCCCCHHHHHHHHhc-CeEEEEecCcHHHHHHHHHhcCCCc---ccee
Confidence            34444443344444443 34456688899999999998888888875 5799999999999999887765333   2567


Q ss_pred             EEEeeecCCCCcchhhhhhcCCCccEEEEc
Q 009871          391 ITKRLEWGNRDHIEAIKEENNEGFEVILGT  420 (523)
Q Consensus       391 ~~~~ldw~~~~~~~~~~~~~~~~fD~Ii~~  420 (523)
                      ++...|.-..+         ...||++|++
T Consensus       110 qV~~gD~lK~d---------~P~fd~cVsN  130 (315)
T KOG0820|consen  110 QVLHGDFLKTD---------LPRFDGCVSN  130 (315)
T ss_pred             eEEecccccCC---------Ccccceeecc
Confidence            77766665542         2378888864

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=97.46  E-value=0.0012  Score=60.09  Aligned_cols=123  Identities=17%  Similarity=0.134  Sum_probs=77.7

Q ss_pred             eEEEECCCccHHHHHHHhcCC-CEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCccE
Q 009871          338 KVLELGCGCGGICSMVAAGSA-DLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEV  416 (523)
Q Consensus       338 ~VLElG~G~G~l~~~~a~~~~-~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~fD~  416 (523)
                      +++|+|+|.|.-|+.+|-..+ .+|+++|....=+..++.-+..=++    .++.+...+..+        .....+||+
T Consensus        51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L----~nv~v~~~R~E~--------~~~~~~fd~  118 (184)
T PF02527_consen   51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGL----SNVEVINGRAEE--------PEYRESFDV  118 (184)
T ss_dssp             EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-----SSEEEEES-HHH--------TTTTT-EEE
T ss_pred             eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCC----CCEEEEEeeecc--------cccCCCccE
Confidence            799999999955555555444 4899999998777777665555444    346665444333        123579999


Q ss_pred             EEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCCh-hHHHHHHHHcCCEEEEEcC
Q 009871          417 ILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDE-PSMLSAATQCGFRLVDKWP  485 (523)
Q Consensus       417 Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~-~~~~~~~~~~gf~~~~~~~  485 (523)
                      |++--+    ..+..++..+..++         +++|.+++.-..+..++ ......+...|.+...+..
T Consensus       119 v~aRAv----~~l~~l~~~~~~~l---------~~~G~~l~~KG~~~~~El~~~~~~~~~~~~~~~~v~~  175 (184)
T PF02527_consen  119 VTARAV----APLDKLLELARPLL---------KPGGRLLAYKGPDAEEELEEAKKAWKKLGLKVLSVPE  175 (184)
T ss_dssp             EEEESS----SSHHHHHHHHGGGE---------EEEEEEEEEESS--HHHHHTHHHHHHCCCEEEEEEEE
T ss_pred             EEeehh----cCHHHHHHHHHHhc---------CCCCEEEEEcCCChHHHHHHHHhHHHHhCCEEeeecc
Confidence            998743    45788888888888         55777666533322111 2445556677877776643

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=97.45  E-value=0.00025  Score=73.88  Aligned_cols=78  Identities=14%  Similarity=0.164  Sum_probs=61.7

Q ss_pred             cCCCCCeEEEECCCccccHHHHHhhC-CCCEEEEEeCCHHHHHHHHhccccC-CCcEEEEEeeccCCccCCCCCCCceeE
Q 009871           72 SGAGRKDVLEVGCGAGNTIFPLIAAY-PDVFVYACDFSPRAVNLVMTHKDFT-ETRVSTFVCDLISDDLSRQISPSSIDI  149 (523)
Q Consensus        72 ~~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~v~gvD~S~~~l~~a~~~~~~~-~~~v~~~~~d~~~~~~~~~~~~~~fD~  149 (523)
                      .+.++.+|||++||+|.=+.++++.. ....|+++|+++..++..+++.... ..++...+.|...+.   ...++.||.
T Consensus       110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~---~~~~~~fD~  186 (470)
T PRK11933        110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFG---AALPETFDA  186 (470)
T ss_pred             CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhh---hhchhhcCe
Confidence            44678999999999999999999984 3468999999999999999877543 356778888877541   122457999


Q ss_pred             EEE
Q 009871          150 VTM  152 (523)
Q Consensus       150 V~~  152 (523)
                      |++
T Consensus       187 ILv  189 (470)
T PRK11933        187 ILL  189 (470)
T ss_pred             EEE
Confidence            997

>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.45  E-value=0.0014  Score=62.42  Aligned_cols=155  Identities=18%  Similarity=0.302  Sum_probs=83.3

Q ss_pred             hHHHHHHHHhccccccc--chhhhHHHHhhhhc--CCCCCeEEEECCCccccHHHHHhh-CCCCEEEEEeCCHHHHHHHH
Q 009871           42 KKYWDLFYKRHQDRFFK--DRHYLDKEWGRYFS--GAGRKDVLEVGCGAGNTIFPLIAA-YPDVFVYACDFSPRAVNLVM  116 (523)
Q Consensus        42 ~~~Wd~~y~~~~~~f~~--~~~~l~~~~~~~~~--~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~v~gvD~S~~~l~~a~  116 (523)
                      ..|-+.+|........+  -..+..+.+.+.+.  ...+.++||||||+-..-..-+.. +.  .|+..|+++.-++..+
T Consensus        19 ~~Yl~~yY~~~~~~~~~~~~~~~~L~~l~~~f~~g~~~g~~llDiGsGPtiy~~lsa~~~f~--~I~l~dy~~~N~~el~   96 (256)
T PF01234_consen   19 RAYLDTYYSFPSGDDAEDEILLFFLKNLHETFSSGGVKGETLLDIGSGPTIYQLLSACEWFE--EIVLSDYSEQNREELE   96 (256)
T ss_dssp             HHHHHHHHSTSSS-CHHHHHHHHHHHHHHHHHHTSSS-EEEEEEES-TT--GGGTTGGGTEE--EEEEEESSHHHHHHHH
T ss_pred             HHHHHHhcCCCccCcccchhHHHHHHHHHHHhCccCcCCCEEEEeCCCcHHHhhhhHHHhhc--ceEEeeccHhhHHHHH
Confidence            45666677543222210  01223333333333  134678999999996664333323 33  4999999999887655


Q ss_pred             hcccc----------------CC-------------CcE-EEEEeeccCCccCCC-C-CCCceeEEEE------------
Q 009871          117 THKDF----------------TE-------------TRV-STFVCDLISDDLSRQ-I-SPSSIDIVTM------------  152 (523)
Q Consensus       117 ~~~~~----------------~~-------------~~v-~~~~~d~~~~~~~~~-~-~~~~fD~V~~------------  152 (523)
                      +..+.                .+             ..| ..+.+|+.+.+.-.+ . -+.+||+|++            
T Consensus        97 kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~  176 (256)
T PF01234_consen   97 KWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLD  176 (256)
T ss_dssp             HHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHH
T ss_pred             HHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHH
Confidence            52210                00             113 367899987642111 0 1236999999            


Q ss_pred             ---------ccccccceeeec------ceEEecCCeEE-EeeCHHHHHHHHHhCCCcEEEEE
Q 009871          153 ---------ERLTGKDQKISE------NFYVRGDGTRA-FYFSNDFLTSLFKENGFDVEELG  198 (523)
Q Consensus       153 ---------~~~~~~~~~~~~------~~~~~~~g~~~-~~~~~~~l~~ll~~~Gf~~~~~~  198 (523)
                               .+++++++.+.-      .+|.-++..+. ...+.+.+++.++++||.+....
T Consensus       177 ~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG~~~F~~l~l~ee~v~~al~~aG~~i~~~~  238 (256)
T PF01234_consen  177 EYRRALRNISSLLKPGGHLILAGVLGSTYYMVGGHKFPCLPLNEEFVREALEEAGFDIEDLE  238 (256)
T ss_dssp             HHHHHHHHHHTTEEEEEEEEEEEESS-SEEEETTEEEE---B-HHHHHHHHHHTTEEEEEEE
T ss_pred             HHHHHHHHHHHHcCCCcEEEEEEEcCceeEEECCEecccccCCHHHHHHHHHHcCCEEEecc
Confidence                     455566666542      33444444332 34589999999999999988776

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....

>KOG1331 consensus Predicted methyltransferase [General function prediction only]

Probab=97.43  E-value=0.00021  Score=67.66  Aligned_cols=98  Identities=17%  Similarity=0.256  Sum_probs=67.9

Q ss_pred             hHHHHHHHHhcccccccchhhhHHHHhhhh-cCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccc
Q 009871           42 KKYWDLFYKRHQDRFFKDRHYLDKEWGRYF-SGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKD  120 (523)
Q Consensus        42 ~~~Wd~~y~~~~~~f~~~~~~l~~~~~~~~-~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~  120 (523)
                      ++|-...|..-...|...+.-......+++ ..+.+..++|+|||.|..+    ..+|.+.++|+|++...+..|++...
T Consensus        11 qeyVh~IYd~ia~~fs~tr~~~Wp~v~qfl~~~~~gsv~~d~gCGngky~----~~~p~~~~ig~D~c~~l~~~ak~~~~   86 (293)
T KOG1331|consen   11 QEYVHSIYDKIATHFSATRAAPWPMVRQFLDSQPTGSVGLDVGCGNGKYL----GVNPLCLIIGCDLCTGLLGGAKRSGG   86 (293)
T ss_pred             HHHhHHHHHHhhhhccccccCccHHHHHHHhccCCcceeeecccCCcccC----cCCCcceeeecchhhhhccccccCCC
Confidence            345445565544444444333322222222 2245889999999999986    33578889999999999999887531


Q ss_pred             cCCCcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871          121 FTETRVSTFVCDLISDDLSRQISPSSIDIVTM  152 (523)
Q Consensus       121 ~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~  152 (523)
                           .....+|+.++    |+++.+||.+++
T Consensus        87 -----~~~~~ad~l~~----p~~~~s~d~~ls  109 (293)
T KOG1331|consen   87 -----DNVCRADALKL----PFREESFDAALS  109 (293)
T ss_pred             -----ceeehhhhhcC----CCCCCccccchh
Confidence                 15778899888    889999999988

>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.43  E-value=0.00096  Score=61.34  Aligned_cols=110  Identities=15%  Similarity=0.099  Sum_probs=76.6

Q ss_pred             CCCCCeEEEECCCccHHHHHHHhc--CCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhh-hh
Q 009871          333 IVAGKKVLELGCGCGGICSMVAAG--SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIK-EE  409 (523)
Q Consensus       333 ~~~~~~VLElG~G~G~l~~~~a~~--~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~-~~  409 (523)
                      ....+++||||.=||.-++..|..  -..+|+++|+++...+...+-++..+..   ++|++....=-  +.+.++. ..
T Consensus        71 ~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~---~KI~~i~g~a~--esLd~l~~~~  145 (237)
T KOG1663|consen   71 LLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVD---HKITFIEGPAL--ESLDELLADG  145 (237)
T ss_pred             HhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhcccc---ceeeeeecchh--hhHHHHHhcC
Confidence            346789999999998333333333  2458999999999999998888887776   56666543221  1232222 23


Q ss_pred             cCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEE
Q 009871          410 NNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCH  459 (523)
Q Consensus       410 ~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~  459 (523)
                      ..+.||+++.-   .+..........+-+|+         ++||++++-.
T Consensus       146 ~~~tfDfaFvD---adK~nY~~y~e~~l~Ll---------r~GGvi~~DN  183 (237)
T KOG1663|consen  146 ESGTFDFAFVD---ADKDNYSNYYERLLRLL---------RVGGVIVVDN  183 (237)
T ss_pred             CCCceeEEEEc---cchHHHHHHHHHHHhhc---------ccccEEEEec
Confidence            56799999986   56666668888888899         6688887644

>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]

Probab=97.42  E-value=0.0022  Score=60.32  Aligned_cols=136  Identities=13%  Similarity=0.086  Sum_probs=86.4

Q ss_pred             HHhcCCCCCCCCeEEEECCCccHHHHHHHhcC--CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcc
Q 009871          326 VLARNPTIVAGKKVLELGCGCGGICSMVAAGS--ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHI  403 (523)
Q Consensus       326 ~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~  403 (523)
                      ++....+..+|.+|||-|+|+|.++.+++..-  ..+++-.|....-.+.|++-.+..++.   ..+.+..-|.......
T Consensus        96 ~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~---~~vt~~hrDVc~~GF~  172 (314)
T KOG2915|consen   96 MILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIG---DNVTVTHRDVCGSGFL  172 (314)
T ss_pred             HHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCC---cceEEEEeecccCCcc
Confidence            34444567799999999999999988887762  348999999887778888888887765   5666666555543211


Q ss_pred             hhhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhHHHHHHHHcCCEEEEE
Q 009871          404 EAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLVDK  483 (523)
Q Consensus       404 ~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~~~~~~~~gf~~~~~  483 (523)
                      .     ....+|.|+. |+.--...++    .+...|         +.+|.-++|+.+--...+.-.+.++++||.-.+.
T Consensus       173 ~-----ks~~aDaVFL-DlPaPw~AiP----ha~~~l---------k~~g~r~csFSPCIEQvqrtce~l~~~gf~~i~~  233 (314)
T KOG2915|consen  173 I-----KSLKADAVFL-DLPAPWEAIP----HAAKIL---------KDEGGRLCSFSPCIEQVQRTCEALRSLGFIEIET  233 (314)
T ss_pred             c-----cccccceEEE-cCCChhhhhh----hhHHHh---------hhcCceEEeccHHHHHHHHHHHHHHhCCCceEEE
Confidence            1     1246777765 4433333333    344466         2345455555443222344567778889876554

>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]

Probab=97.40  E-value=0.0011  Score=60.10  Aligned_cols=123  Identities=17%  Similarity=0.226  Sum_probs=88.9

Q ss_pred             cccchhHHH--HHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceE
Q 009871          314 LMLWESAHL--MAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLI  391 (523)
Q Consensus       314 ~~~W~~a~~--la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~  391 (523)
                      +..|+.-+.  +|+.+.     .+|.+||++|-|.|.+...+-+..+.+=+.++..|.+++.++.+.-.     ...+|.
T Consensus        83 Mm~WEtpiMha~A~ai~-----tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~-----ek~nVi  152 (271)
T KOG1709|consen   83 MMRWETPIMHALAEAIS-----TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWR-----EKENVI  152 (271)
T ss_pred             hhhhhhHHHHHHHHHHh-----hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccc-----cccceE
Confidence            567876554  555554     47889999999999666666556677778899999999999876543     235677


Q ss_pred             EEeeecCCCCcchhhhhhcCCCccEEEEcccc-CCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee
Q 009871          392 TKRLEWGNRDHIEAIKEENNEGFEVILGTDVS-YIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIF  461 (523)
Q Consensus       392 ~~~ldw~~~~~~~~~~~~~~~~fD~Ii~~d~~-y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~  461 (523)
                      +....|.+.-     ..++++.||-|+- |.. -.-+.+..+.+.+-+||         +|+|++=.+...
T Consensus       153 il~g~WeDvl-----~~L~d~~FDGI~y-DTy~e~yEdl~~~hqh~~rLL---------kP~gv~SyfNg~  208 (271)
T KOG1709|consen  153 ILEGRWEDVL-----NTLPDKHFDGIYY-DTYSELYEDLRHFHQHVVRLL---------KPEGVFSYFNGL  208 (271)
T ss_pred             EEecchHhhh-----ccccccCcceeEe-echhhHHHHHHHHHHHHhhhc---------CCCceEEEecCc
Confidence            8888998752     2456788999986 333 23456777888899999         779987665433

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=97.40  E-value=0.00031  Score=61.27  Aligned_cols=73  Identities=22%  Similarity=0.254  Sum_probs=53.6

Q ss_pred             CCCCeEEEECCCccccHHHHHh-----hCCCCEEEEEeCCHHHHHHHHhccccC----CCcEEEEEeeccCCccCCCCCC
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIA-----AYPDVFVYACDFSPRAVNLVMTHKDFT----ETRVSTFVCDLISDDLSRQISP  144 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~-----~~~~~~v~gvD~S~~~l~~a~~~~~~~----~~~v~~~~~d~~~~~~~~~~~~  144 (523)
                      .+...|+|+|||.|.++..|+.     . ++.+|+|||.++..++.|.++.+..    ..++.+..+++...     ...
T Consensus        24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~   97 (141)
T PF13679_consen   24 KRCITVVDLGSGKGYLSRALAHLLCNSS-PNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADE-----SSS   97 (141)
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHHHhcC-CCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhh-----ccc
Confidence            5678999999999999999998     4 6889999999999999998865432    14455666555432     113


Q ss_pred             CceeEEEE
Q 009871          145 SSIDIVTM  152 (523)
Q Consensus       145 ~~fD~V~~  152 (523)
                      ...++++.
T Consensus        98 ~~~~~~vg  105 (141)
T PF13679_consen   98 DPPDILVG  105 (141)
T ss_pred             CCCeEEEE
Confidence            45566655

>KOG2730 consensus Methylase [General function prediction only]

Probab=97.39  E-value=0.00011  Score=66.45  Aligned_cols=60  Identities=17%  Similarity=0.319  Sum_probs=52.1

Q ss_pred             CCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhcccc--CCCcEEEEEeeccCC
Q 009871           75 GRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDF--TETRVSTFVCDLISD  136 (523)
Q Consensus        75 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~--~~~~v~~~~~d~~~~  136 (523)
                      ....|+|.-||.|..+..++.+++.  |++||++|.-|..|+.+++.  -+.++.|+++|+.++
T Consensus        94 ~~~~iidaf~g~gGntiqfa~~~~~--VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~  155 (263)
T KOG2730|consen   94 NAEVIVDAFCGVGGNTIQFALQGPY--VIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDL  155 (263)
T ss_pred             CcchhhhhhhcCCchHHHHHHhCCe--EEEEeccHHHHHHHhccceeecCCceeEEEechHHHH
Confidence            5678999999999999999999655  99999999999999998853  246999999999754

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=97.39  E-value=0.00032  Score=68.32  Aligned_cols=75  Identities=15%  Similarity=0.194  Sum_probs=52.0

Q ss_pred             CCCeEEEECCCccccH----HHHHhhCC----CCEEEEEeCCHHHHHHHHhcc-c----------------------cC-
Q 009871           75 GRKDVLEVGCGAGNTI----FPLIAAYP----DVFVYACDFSPRAVNLVMTHK-D----------------------FT-  122 (523)
Q Consensus        75 ~~~~iLDiGcG~G~~~----~~l~~~~~----~~~v~gvD~S~~~l~~a~~~~-~----------------------~~-  122 (523)
                      ..-+|+-.||+||--.    ..+.+..+    +.+|+|+|+|+.+|+.|++-. .                      .. 
T Consensus       115 ~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~  194 (287)
T PRK10611        115 GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEG  194 (287)
T ss_pred             CCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCc
Confidence            3479999999999754    33334321    478999999999999999731 0                      00 


Q ss_pred             --------CCcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871          123 --------ETRVSTFVCDLISDDLSRQISPSSIDIVTM  152 (523)
Q Consensus       123 --------~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~  152 (523)
                              ...|.|.+.|+.+.++   .+.+.||+|+|
T Consensus       195 ~~~v~~~lr~~V~F~~~NL~~~~~---~~~~~fD~I~c  229 (287)
T PRK10611        195 LVRVRQELANYVDFQQLNLLAKQW---AVPGPFDAIFC  229 (287)
T ss_pred             eEEEChHHHccCEEEcccCCCCCC---ccCCCcceeeH
Confidence                    1356788888875421   12578999999

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=97.39  E-value=0.0029  Score=61.46  Aligned_cols=106  Identities=15%  Similarity=0.165  Sum_probs=72.4

Q ss_pred             CeEEEECCCccHHHHHHHhcC-CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCcc
Q 009871          337 KKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFE  415 (523)
Q Consensus       337 ~~VLElG~G~G~l~~~~a~~~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~fD  415 (523)
                      ++||-||-|.|+....+++.. ..+++++|+++.+++.+++-+..-.......++.+..-|-     .+-++.. ..+||
T Consensus        78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg-----~~~v~~~-~~~fD  151 (282)
T COG0421          78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDG-----VEFLRDC-EEKFD  151 (282)
T ss_pred             CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccH-----HHHHHhC-CCcCC
Confidence            699999999999888888875 5699999999999999987554322111135565543321     1112222 34899


Q ss_pred             EEEEccccCCCC-----ChHHHHHHHHHHhhccCCCCCCCCCcEEEEE
Q 009871          416 VILGTDVSYIPE-----AILPLFATAKELTASSNKSLREDQQPAFILC  458 (523)
Q Consensus       416 ~Ii~~d~~y~~~-----~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~  458 (523)
                      +||.- +.-...     .-..+.+.+++.|         +++|.++.-
T Consensus       152 vIi~D-~tdp~gp~~~Lft~eFy~~~~~~L---------~~~Gi~v~q  189 (282)
T COG0421         152 VIIVD-STDPVGPAEALFTEEFYEGCRRAL---------KEDGIFVAQ  189 (282)
T ss_pred             EEEEc-CCCCCCcccccCCHHHHHHHHHhc---------CCCcEEEEe
Confidence            99973 322211     2378999999999         668888775

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.36  E-value=0.00041  Score=67.56  Aligned_cols=127  Identities=18%  Similarity=0.160  Sum_probs=73.8

Q ss_pred             HHHHhhhhcCCCCCeEEEECCCccccHHHHHhhCCC-CEEEEEeCCHHHHHHHHhccccCCC--cEEEEEeeccCCccCC
Q 009871           64 DKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPD-VFVYACDFSPRAVNLVMTHKDFTET--RVSTFVCDLISDDLSR  140 (523)
Q Consensus        64 ~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~-~~v~gvD~S~~~l~~a~~~~~~~~~--~v~~~~~d~~~~~~~~  140 (523)
                      ..++..-++.-.+.+|||+|||+|..+..+.+.++. .+++++|.|+.|++.++........  ...+ ..+.... .. 
T Consensus        22 l~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~-~~~~~~~-~~-   98 (274)
T PF09243_consen   22 LSELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEW-RRVLYRD-FL-   98 (274)
T ss_pred             HHHHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchh-hhhhhcc-cc-
Confidence            334433344456789999999999988877776653 4699999999999999885432211  1111 1111110 00 


Q ss_pred             CCCCCceeEEEE----ccccc---------cceeeecceEEecCCeEEEeeCHHHHHHHHHhCCCcEE
Q 009871          141 QISPSSIDIVTM----ERLTG---------KDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGFDVE  195 (523)
Q Consensus       141 ~~~~~~fD~V~~----~~~~~---------~~~~~~~~~~~~~~g~~~~~~~~~~l~~ll~~~Gf~~~  195 (523)
                      ++  ...|+|++    ..+..         -+....+..++-..|+..-|-...++++.|.+.|+.++
T Consensus        99 ~~--~~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~~LVlVEpGt~~Gf~~i~~aR~~l~~~~~~v~  164 (274)
T PF09243_consen   99 PF--PPDDLVIASYVLNELPSAARAELVRSLWNKTAPVLVLVEPGTPAGFRRIAEARDQLLEKGAHVV  164 (274)
T ss_pred             cC--CCCcEEEEehhhhcCCchHHHHHHHHHHHhccCcEEEEcCCChHHHHHHHHHHHHHhhCCCceE
Confidence            12  22399999    11100         00111223345556666655567778888877777654

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=97.35  E-value=0.0023  Score=61.38  Aligned_cols=50  Identities=20%  Similarity=0.218  Sum_probs=39.3

Q ss_pred             hHHHHhhhhc----CCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHH
Q 009871           63 LDKEWGRYFS----GAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNL  114 (523)
Q Consensus        63 l~~~~~~~~~----~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~  114 (523)
                      +...+.++.+    .....+||--|||.|+++..++.+  +..+.|.|+|--|+-.
T Consensus        40 I~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~~--G~~~~gnE~S~~Mll~   93 (270)
T PF07942_consen   40 ILDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAKL--GYAVQGNEFSYFMLLA   93 (270)
T ss_pred             HHHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhhc--cceEEEEEchHHHHHH
Confidence            4444444444    245678999999999999999999  6779999999999744

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=97.35  E-value=0.0029  Score=59.47  Aligned_cols=107  Identities=10%  Similarity=-0.002  Sum_probs=75.4

Q ss_pred             CeEEEECCCccHHHHHHHhcCCC-EEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCC-Cc
Q 009871          337 KKVLELGCGCGGICSMVAAGSAD-LVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNE-GF  414 (523)
Q Consensus       337 ~~VLElG~G~G~l~~~~a~~~~~-~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~-~f  414 (523)
                      ..+||||||.|.....+|+..+. .++|+|+....+..|...+...++.    ++.+...|   .  ..-+..+.++ +.
T Consensus        50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~----Nlri~~~D---A--~~~l~~~~~~~sl  120 (227)
T COG0220          50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLK----NLRLLCGD---A--VEVLDYLIPDGSL  120 (227)
T ss_pred             cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCC----cEEEEcCC---H--HHHHHhcCCCCCe
Confidence            47999999999888888888654 8999999998988888888776652    34443322   1  1112233344 88


Q ss_pred             cEEEEc--cccCCCC------ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee
Q 009871          415 EVILGT--DVSYIPE------AILPLFATAKELTASSNKSLREDQQPAFILCHIF  461 (523)
Q Consensus       415 D~Ii~~--d~~y~~~------~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~  461 (523)
                      |-|..+  |.-.-..      ..+.+++.+.+.|         ++||.+.+..-.
T Consensus       121 ~~I~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~L---------k~gG~l~~aTD~  166 (227)
T COG0220         121 DKIYINFPDPWPKKRHHKRRLTQPEFLKLYARKL---------KPGGVLHFATDN  166 (227)
T ss_pred             eEEEEECCCCCCCccccccccCCHHHHHHHHHHc---------cCCCEEEEEecC
Confidence            888765  3322221      4688999999999         789999998644

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.35  E-value=0.0022  Score=62.49  Aligned_cols=126  Identities=16%  Similarity=0.099  Sum_probs=68.7

Q ss_pred             CCCCCeEEEECCCccHHHHHHHhc---CCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhh
Q 009871          333 IVAGKKVLELGCGCGGICSMVAAG---SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEE  409 (523)
Q Consensus       333 ~~~~~~VLElG~G~G~l~~~~a~~---~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~  409 (523)
                      .+..++|||+|||+| .+..++..   ...+++++|.|+.|++.++.-+.. .....  .     ..|... .....  .
T Consensus        31 ~f~P~~vLD~GsGpG-ta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~-~~~~~--~-----~~~~~~-~~~~~--~   98 (274)
T PF09243_consen   31 DFRPRSVLDFGSGPG-TALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRA-GPNNR--N-----AEWRRV-LYRDF--L   98 (274)
T ss_pred             CCCCceEEEecCChH-HHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhc-ccccc--c-----chhhhh-hhccc--c
Confidence            457789999999998 55554443   245899999999999988774433 22110  0     011111 00000  1


Q ss_pred             cCCCccEEEEccccCCCCC--hHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCCh---hHHHHHHHHcCCEEE
Q 009871          410 NNEGFEVILGTDVSYIPEA--ILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDE---PSMLSAATQCGFRLV  481 (523)
Q Consensus       410 ~~~~fD~Ii~~d~~y~~~~--~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~---~~~~~~~~~~gf~~~  481 (523)
                      +....|+|+++-++-.-..  ...+++.+...+           .+.+++....-..+-   ....+.+.+.|+.+.
T Consensus        99 ~~~~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~-----------~~~LVlVEpGt~~Gf~~i~~aR~~l~~~~~~v~  164 (274)
T PF09243_consen   99 PFPPDDLVIASYVLNELPSAARAELVRSLWNKT-----------APVLVLVEPGTPAGFRRIAEARDQLLEKGAHVV  164 (274)
T ss_pred             cCCCCcEEEEehhhhcCCchHHHHHHHHHHHhc-----------cCcEEEEcCCChHHHHHHHHHHHHHhhCCCceE
Confidence            1124499999988766444  334444444434           336666544322221   123344455666664

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=97.35  E-value=0.0014  Score=70.35  Aligned_cols=48  Identities=15%  Similarity=0.153  Sum_probs=39.3

Q ss_pred             CCCeEEEECCCccHHHHHHHhcC---------CCEEEEEcCChHHHHHHHHHHHhcC
Q 009871          335 AGKKVLELGCGCGGICSMVAAGS---------ADLVVATDGDSIALDLLAQNVTANL  382 (523)
Q Consensus       335 ~~~~VLElG~G~G~l~~~~a~~~---------~~~V~~~D~~~~~l~~~~~n~~~n~  382 (523)
                      .+.+|||.|||+|.+...++...         ...+++.|+++.++..++.|+...+
T Consensus        31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~   87 (524)
T TIGR02987        31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFA   87 (524)
T ss_pred             cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcC
Confidence            45699999999998877776532         1479999999999999999987654

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=97.34  E-value=0.00078  Score=63.17  Aligned_cols=74  Identities=22%  Similarity=0.351  Sum_probs=57.7

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM  152 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~  152 (523)
                      +...+|+|||||.--++.++....++..++|+||+..+++...+.....+...++...|+...     .+....|+.+.
T Consensus       104 ~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~-----~~~~~~DlaLl  177 (251)
T PF07091_consen  104 PPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSD-----PPKEPADLALL  177 (251)
T ss_dssp             ---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTS-----HTTSEESEEEE
T ss_pred             CCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeecc-----CCCCCcchhhH
Confidence            458899999999999999999888889999999999999999886655557788888888754     34667999988

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=97.34  E-value=0.00097  Score=63.44  Aligned_cols=89  Identities=18%  Similarity=0.180  Sum_probs=61.4

Q ss_pred             HHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcc
Q 009871          324 AAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHI  403 (523)
Q Consensus       324 a~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~  403 (523)
                      .+.+....+..++.+|||||+|.|.++..+++++. +|+++++|+.+++.+++....      ..++.+...|.-..+..
T Consensus        19 ~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~-~v~aiEiD~~l~~~L~~~~~~------~~n~~vi~~DaLk~d~~   91 (259)
T COG0030          19 IDKIVEAANISPGDNVLEIGPGLGALTEPLLERAA-RVTAIEIDRRLAEVLKERFAP------YDNLTVINGDALKFDFP   91 (259)
T ss_pred             HHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhcC-eEEEEEeCHHHHHHHHHhccc------ccceEEEeCchhcCcch
Confidence            45555555556788999999999999999999865 599999999999999876541      14555554444332110


Q ss_pred             hhhhhhcCCCccEEEEccccCCC
Q 009871          404 EAIKEENNEGFEVILGTDVSYIP  426 (523)
Q Consensus       404 ~~~~~~~~~~fD~Ii~~d~~y~~  426 (523)
                          .+  ..++.|+++ +-|+.
T Consensus        92 ----~l--~~~~~vVaN-lPY~I  107 (259)
T COG0030          92 ----SL--AQPYKVVAN-LPYNI  107 (259)
T ss_pred             ----hh--cCCCEEEEc-CCCcc
Confidence                00  067888886 55553

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=97.32  E-value=0.00044  Score=67.09  Aligned_cols=76  Identities=20%  Similarity=0.300  Sum_probs=61.4

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC-----CCcEEEEEeeccCCccCCCCCCCcee
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT-----ETRVSTFVCDLISDDLSRQISPSSID  148 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~-----~~~v~~~~~d~~~~~~~~~~~~~~fD  148 (523)
                      +..++||-||-|.|..+..+++..+-.+++.||++++.++.|++.....     .++++.+..|..+.  -... .++||
T Consensus        75 ~~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~--v~~~-~~~fD  151 (282)
T COG0421          75 PNPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEF--LRDC-EEKFD  151 (282)
T ss_pred             CCCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHH--HHhC-CCcCC
Confidence            4457999999999999999999977678999999999999999965321     47899999998653  1111 23899


Q ss_pred             EEEE
Q 009871          149 IVTM  152 (523)
Q Consensus       149 ~V~~  152 (523)
                      +|++
T Consensus       152 vIi~  155 (282)
T COG0421         152 VIIV  155 (282)
T ss_pred             EEEE
Confidence            9999

>PRK00536 speE spermidine synthase; Provisional

Probab=97.30  E-value=0.0012  Score=63.41  Aligned_cols=111  Identities=10%  Similarity=0.032  Sum_probs=74.0

Q ss_pred             hhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccc-----cCCCcEEEEEeeccCCccCCCCCC
Q 009871           70 YFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKD-----FTETRVSTFVCDLISDDLSRQISP  144 (523)
Q Consensus        70 ~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~-----~~~~~v~~~~~d~~~~~~~~~~~~  144 (523)
                      +...+.+++||=||-|-|..+..++++-  .+|+-||+++++++.|++...     ...++++.+. .+.+      ...
T Consensus        67 l~~h~~pk~VLIiGGGDGg~~REvLkh~--~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~-~~~~------~~~  137 (262)
T PRK00536         67 GCTKKELKEVLIVDGFDLELAHQLFKYD--THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK-QLLD------LDI  137 (262)
T ss_pred             HhhCCCCCeEEEEcCCchHHHHHHHCcC--CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee-hhhh------ccC
Confidence            4455788999999999999999999883  389999999999999999542     2457777765 2211      124


Q ss_pred             CceeEEEE-----ccccccceeeecceEEecCCeEEE-----eeCHHH---HHHHHHhCCCcEE
Q 009871          145 SSIDIVTM-----ERLTGKDQKISENFYVRGDGTRAF-----YFSNDF---LTSLFKENGFDVE  195 (523)
Q Consensus       145 ~~fD~V~~-----~~~~~~~~~~~~~~~~~~~g~~~~-----~~~~~~---l~~ll~~~Gf~~~  195 (523)
                      ++||+|++     ..|.+...+     .++++|.++.     ++..+.   +.+.+++ .|..+
T Consensus       138 ~~fDVIIvDs~~~~~fy~~~~~-----~L~~~Gi~v~Qs~sp~~~~~~~~~i~~~l~~-~F~~v  195 (262)
T PRK00536        138 KKYDLIICLQEPDIHKIDGLKR-----MLKEDGVFISVAKHPLLEHVSMQNALKNMGD-FFSIA  195 (262)
T ss_pred             CcCCEEEEcCCCChHHHHHHHH-----hcCCCcEEEECCCCcccCHHHHHHHHHHHHh-hCCce
Confidence            68999999     222222222     4566665543     234444   4444554 57643

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=97.29  E-value=0.00055  Score=65.87  Aligned_cols=74  Identities=20%  Similarity=0.173  Sum_probs=45.3

Q ss_pred             CCCeEEEECCCccccHHHHHh-h-CCCCEEEEEeCCHHHHHHHHhccc---cCCCcEEEEEeeccCCccCCCCCCCceeE
Q 009871           75 GRKDVLEVGCGAGNTIFPLIA-A-YPDVFVYACDFSPRAVNLVMTHKD---FTETRVSTFVCDLISDDLSRQISPSSIDI  149 (523)
Q Consensus        75 ~~~~iLDiGcG~G~~~~~l~~-~-~~~~~v~gvD~S~~~l~~a~~~~~---~~~~~v~~~~~d~~~~~~~~~~~~~~fD~  149 (523)
                      .+++|+=||||.=-++..+.. + .++..|+++|+++++++.+++-..   ....+++|+.+|+.+.    ...-..||+
T Consensus       120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~----~~dl~~~Dv  195 (276)
T PF03059_consen  120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDV----TYDLKEYDV  195 (276)
T ss_dssp             ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-----GG----SE
T ss_pred             ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhcc----ccccccCCE
Confidence            346999999998777655544 3 567889999999999999988543   1257899999999755    223357999


Q ss_pred             EEE
Q 009871          150 VTM  152 (523)
Q Consensus       150 V~~  152 (523)
                      |+.
T Consensus       196 V~l  198 (276)
T PF03059_consen  196 VFL  198 (276)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            998

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=97.27  E-value=0.00039  Score=69.39  Aligned_cols=89  Identities=15%  Similarity=0.310  Sum_probs=59.5

Q ss_pred             hhhHHHHhhhhcCCCCCeEEEECCCccccHHHHHhh-------CCCCEEEEEeCCHHHHHHHHhccccC---CCcEEEEE
Q 009871           61 HYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAA-------YPDVFVYACDFSPRAVNLVMTHKDFT---ETRVSTFV  130 (523)
Q Consensus        61 ~~l~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~-------~~~~~v~gvD~S~~~l~~a~~~~~~~---~~~v~~~~  130 (523)
                      ..+.+.+.+++...++.+|+|-+||+|.++..+.+.       .+..+++|+|+++.++..|+-+....   ........
T Consensus        32 ~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~  111 (311)
T PF02384_consen   32 REIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQ  111 (311)
T ss_dssp             HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEE
T ss_pred             HHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccc
Confidence            344445556666667778999999999999888774       35788999999999999998764222   23345778


Q ss_pred             eeccCCccCCCC-CCCceeEEEE
Q 009871          131 CDLISDDLSRQI-SPSSIDIVTM  152 (523)
Q Consensus       131 ~d~~~~~~~~~~-~~~~fD~V~~  152 (523)
                      +|....+   .. ....||+|++
T Consensus       112 ~d~l~~~---~~~~~~~~D~ii~  131 (311)
T PF02384_consen  112 GDSLEND---KFIKNQKFDVIIG  131 (311)
T ss_dssp             S-TTTSH---SCTST--EEEEEE
T ss_pred             ccccccc---ccccccccccccC
Confidence            8876442   11 2578999999

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.24  E-value=0.00092  Score=61.45  Aligned_cols=74  Identities=18%  Similarity=0.214  Sum_probs=45.1

Q ss_pred             CCCeEEEECCCccccH----HHHHhh----CC-CCEEEEEeCCHHHHHHHHhcc------c-------------c-C---
Q 009871           75 GRKDVLEVGCGAGNTI----FPLIAA----YP-DVFVYACDFSPRAVNLVMTHK------D-------------F-T---  122 (523)
Q Consensus        75 ~~~~iLDiGcG~G~~~----~~l~~~----~~-~~~v~gvD~S~~~l~~a~~~~------~-------------~-~---  122 (523)
                      ..-+|+-+||++|.-.    ..+.+.    .+ ..+|+|+|+|+.+|+.|++-.      .             . .   
T Consensus        31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~  110 (196)
T PF01739_consen   31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY  110 (196)
T ss_dssp             S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred             CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence            5678999999999753    334441    11 479999999999999998721      0             0 0   


Q ss_pred             ------CCcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871          123 ------ETRVSTFVCDLISDDLSRQISPSSIDIVTM  152 (523)
Q Consensus       123 ------~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~  152 (523)
                            ...++|.+.|+.+.    +.+.+.||+|+|
T Consensus       111 ~v~~~lr~~V~F~~~NL~~~----~~~~~~fD~I~C  142 (196)
T PF01739_consen  111 RVKPELRKMVRFRRHNLLDP----DPPFGRFDLIFC  142 (196)
T ss_dssp             TE-HHHHTTEEEEE--TT-S----------EEEEEE
T ss_pred             eEChHHcCceEEEecccCCC----CcccCCccEEEe
Confidence                  14689999999872    335678999999

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>KOG3115 consensus Methyltransferase-like protein [General function prediction only]

Probab=97.23  E-value=0.00079  Score=60.34  Aligned_cols=61  Identities=15%  Similarity=0.419  Sum_probs=46.5

Q ss_pred             CCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhcccc--------CCCcEEEEEeeccC
Q 009871           75 GRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDF--------TETRVSTFVCDLIS  135 (523)
Q Consensus        75 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~--------~~~~v~~~~~d~~~  135 (523)
                      ....+.|||||.|.++..|+..+|+--+.|++|-.+.-+..+++...        ...++.....+...
T Consensus        60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk  128 (249)
T KOG3115|consen   60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMK  128 (249)
T ss_pred             ccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchh
Confidence            44679999999999999999999999999999988877777665321        12455666655543

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=97.23  E-value=0.00089  Score=65.76  Aligned_cols=67  Identities=19%  Similarity=0.302  Sum_probs=50.7

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM  152 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~  152 (523)
                      .++.++|||||++|..+..|+++  +.+|+|||.++ |-....     ..++|.....|.....   | +.+.+|.|+|
T Consensus       210 ~~g~~vlDLGAsPGGWT~~L~~r--G~~V~AVD~g~-l~~~L~-----~~~~V~h~~~d~fr~~---p-~~~~vDwvVc  276 (357)
T PRK11760        210 APGMRAVDLGAAPGGWTYQLVRR--GMFVTAVDNGP-MAQSLM-----DTGQVEHLRADGFKFR---P-PRKNVDWLVC  276 (357)
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHc--CCEEEEEechh-cCHhhh-----CCCCEEEEeccCcccC---C-CCCCCCEEEE
Confidence            57889999999999999999998  56899999665 222222     2367888888876541   1 2668999999

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=97.21  E-value=0.0004  Score=67.43  Aligned_cols=117  Identities=19%  Similarity=0.139  Sum_probs=74.2

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC---CCcEEEEEeeccCCccCCCCCCCceeEE
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT---ETRVSTFVCDLISDDLSRQISPSSIDIV  150 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~---~~~v~~~~~d~~~~~~~~~~~~~~fD~V  150 (523)
                      ..+++|||+=|=||.++...+..+ ..+|++||.|..+++.|+++...+   ..+++|++.|+.+. +..--..++||+|
T Consensus       122 ~~gkrvLnlFsYTGgfsv~Aa~gG-A~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~-l~~~~~~~~fD~I  199 (286)
T PF10672_consen  122 AKGKRVLNLFSYTGGFSVAAAAGG-AKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKF-LKRLKKGGRFDLI  199 (286)
T ss_dssp             CTTCEEEEET-TTTHHHHHHHHTT-ESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHH-HHHHHHTT-EEEE
T ss_pred             cCCCceEEecCCCCHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHH-HHHHhcCCCCCEE
Confidence            457899999999999998877653 347999999999999999987544   35789999998642 1100124689999


Q ss_pred             EE--ccccccceeeec---------ceEEecCCeEEEe-----eCHHHHHHHHHhCCC
Q 009871          151 TM--ERLTGKDQKISE---------NFYVRGDGTRAFY-----FSNDFLTSLFKENGF  192 (523)
Q Consensus       151 ~~--~~~~~~~~~~~~---------~~~~~~~g~~~~~-----~~~~~l~~ll~~~Gf  192 (523)
                      ++  ..|.+....+..         .-.++++|.++..     .+.+.+.+.+.+++-
T Consensus       200 IlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~~i~~~~l~~~~~~~a~  257 (286)
T PF10672_consen  200 ILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSHHISPDFLLEAVAEAAR  257 (286)
T ss_dssp             EE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--TTS-HHHHHHHHHHHHH
T ss_pred             EECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCcccCHHHHHHHHHHhCc
Confidence            99  333111111110         1135667776543     366777777766553

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>PRK10742 putative methyltransferase; Provisional

Probab=97.19  E-value=0.0019  Score=60.88  Aligned_cols=90  Identities=12%  Similarity=0.116  Sum_probs=61.3

Q ss_pred             CCCC--eEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCC-----CCceEEEeeecCCCCcchhh
Q 009871          334 VAGK--KVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPF-----LAKLITKRLEWGNRDHIEAI  406 (523)
Q Consensus       334 ~~~~--~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~-----~~~v~~~~ldw~~~~~~~~~  406 (523)
                      .+|.  +|||+=+|+|..+..++++|+. |+++|.++.+..+++.|++.-.....     ..++++...     +...-+
T Consensus        85 k~g~~p~VLD~TAGlG~Da~~las~G~~-V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~-----da~~~L  158 (250)
T PRK10742         85 KGDYLPDVVDATAGLGRDAFVLASVGCR-VRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHA-----SSLTAL  158 (250)
T ss_pred             CCCCCCEEEECCCCccHHHHHHHHcCCE-EEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeC-----cHHHHH
Confidence            3555  8999999999999999999876 99999999999999999987321100     023333222     222222


Q ss_pred             hhhcCCCccEEEEccccCCCCChHH
Q 009871          407 KEENNEGFEVILGTDVSYIPEAILP  431 (523)
Q Consensus       407 ~~~~~~~fD~Ii~~d~~y~~~~~~~  431 (523)
                      ... ..+||+|.. |..|-...-..
T Consensus       159 ~~~-~~~fDVVYl-DPMfp~~~ksa  181 (250)
T PRK10742        159 TDI-TPRPQVVYL-DPMFPHKQKSA  181 (250)
T ss_pred             hhC-CCCCcEEEE-CCCCCCCcccc
Confidence            232 347999997 77777544333

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=97.19  E-value=0.0094  Score=57.29  Aligned_cols=134  Identities=16%  Similarity=0.127  Sum_probs=84.9

Q ss_pred             CCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCC---------------------------
Q 009871          334 VAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPF---------------------------  386 (523)
Q Consensus       334 ~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~---------------------------  386 (523)
                      ....+||=-|||.|.++--+|.+|. .|.+.|.|--|+=.  .|.-.|.....                           
T Consensus        55 ~~~~~VLVPGsGLGRLa~Eia~~G~-~~~gnE~S~~Mll~--s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~i  131 (270)
T PF07942_consen   55 RSKIRVLVPGSGLGRLAWEIAKLGY-AVQGNEFSYFMLLA--SNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRI  131 (270)
T ss_pred             CCccEEEEcCCCcchHHHHHhhccc-eEEEEEchHHHHHH--HHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEe
Confidence            3456999999999999999999976 69999999877533  34444432100                           


Q ss_pred             -----------CCceEEEeeecCCCCcchhhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEE
Q 009871          387 -----------LAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAF  455 (523)
Q Consensus       387 -----------~~~v~~~~ldw~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~  455 (523)
                                 ...+.....|+.+.   -. .+...+.||+|+.+=-+=-.+++-..++++.++|         +|||..
T Consensus       132 PDv~p~~~~~~~~~~sm~aGDF~e~---y~-~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lL---------kpgG~W  198 (270)
T PF07942_consen  132 PDVDPSSELPSPSNLSMCAGDFLEV---YG-PDENKGSFDVVVTCFFIDTAENIIEYIETIEHLL---------KPGGYW  198 (270)
T ss_pred             CCcCcccccCCCCceeEecCccEEe---cC-CcccCCcccEEEEEEEeechHHHHHHHHHHHHHh---------ccCCEE
Confidence                       00111111111111   00 0001368999998832333567888999999999         678866


Q ss_pred             EEEEee----c----------CCChhHHHHHHHHcCCEEEEE
Q 009871          456 ILCHIF----R----------QVDEPSMLSAATQCGFRLVDK  483 (523)
Q Consensus       456 ~l~~~~----r----------~~~~~~~~~~~~~~gf~~~~~  483 (523)
                      |-..+.    .          .++.+++...+++.||++.+.
T Consensus       199 IN~GPLlyh~~~~~~~~~~sveLs~eEi~~l~~~~GF~~~~~  240 (270)
T PF07942_consen  199 INFGPLLYHFEPMSIPNEMSVELSLEEIKELIEKLGFEIEKE  240 (270)
T ss_pred             EecCCccccCCCCCCCCCcccCCCHHHHHHHHHHCCCEEEEE
Confidence            633222    1          123478899999999999764

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=97.17  E-value=0.0015  Score=64.12  Aligned_cols=85  Identities=14%  Similarity=0.182  Sum_probs=55.5

Q ss_pred             CCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCC
Q 009871          333 IVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNE  412 (523)
Q Consensus       333 ~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~  412 (523)
                      ..+|.+||||||++|+.+-.++.+|+ +|+++|..+ |-    .++..      ..+|.....+=....      + ...
T Consensus       209 ~~~g~~vlDLGAsPGGWT~~L~~rG~-~V~AVD~g~-l~----~~L~~------~~~V~h~~~d~fr~~------p-~~~  269 (357)
T PRK11760        209 LAPGMRAVDLGAAPGGWTYQLVRRGM-FVTAVDNGP-MA----QSLMD------TGQVEHLRADGFKFR------P-PRK  269 (357)
T ss_pred             cCCCCEEEEeCCCCcHHHHHHHHcCC-EEEEEechh-cC----HhhhC------CCCEEEEeccCcccC------C-CCC
Confidence            46899999999999999999999987 899999754 21    22222      134444332211110      0 145


Q ss_pred             CccEEEEccccCCCCChHHHHHHHHHHh
Q 009871          413 GFEVILGTDVSYIPEAILPLFATAKELT  440 (523)
Q Consensus       413 ~fD~Ii~~d~~y~~~~~~~l~~~l~~ll  440 (523)
                      .+|+|++ |+.-.+   ..+.+.+.++|
T Consensus       270 ~vDwvVc-Dmve~P---~rva~lm~~Wl  293 (357)
T PRK11760        270 NVDWLVC-DMVEKP---ARVAELMAQWL  293 (357)
T ss_pred             CCCEEEE-ecccCH---HHHHHHHHHHH
Confidence            8999998 666544   45667777777

>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=97.14  E-value=0.0033  Score=57.57  Aligned_cols=115  Identities=10%  Similarity=0.221  Sum_probs=81.4

Q ss_pred             CCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC--CCcEEEEEeeccCCccCCCCC-CCceeEEE
Q 009871           75 GRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISDDLSRQIS-PSSIDIVT  151 (523)
Q Consensus        75 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~~~~~~~-~~~fD~V~  151 (523)
                      .+.++.||||-.|.+..+|.+.++..++++.|+++..++.|.++....  ..+++...+|...     ++. +..+|+|+
T Consensus        16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~-----~l~~~d~~d~iv   90 (226)
T COG2384          16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLA-----VLELEDEIDVIV   90 (226)
T ss_pred             cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCcc-----ccCccCCcCEEE
Confidence            445599999999999999999999889999999999999999876433  4667777777743     233 33789988


Q ss_pred             E--------cccccccee-ee--cceEEecCCeEEEeeCHHHHHHHHHhCCCcEEEEEeE
Q 009871          152 M--------ERLTGKDQK-IS--ENFYVRGDGTRAFYFSNDFLTSLFKENGFDVEELGLC  200 (523)
Q Consensus       152 ~--------~~~~~~~~~-~~--~~~~~~~~g~~~~~~~~~~l~~ll~~~Gf~~~~~~~~  200 (523)
                      .        ..++..+.. +.  +.+.+-|+-      ...++++.|...+|.+......
T Consensus        91 IAGMGG~lI~~ILee~~~~l~~~~rlILQPn~------~~~~LR~~L~~~~~~I~~E~il  144 (226)
T COG2384          91 IAGMGGTLIREILEEGKEKLKGVERLILQPNI------HTYELREWLSANSYEIKAETIL  144 (226)
T ss_pred             EeCCcHHHHHHHHHHhhhhhcCcceEEECCCC------CHHHHHHHHHhCCceeeeeeee
Confidence            7        122222211 10  112344432      5788999999999998665543

>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein

Probab=97.11  E-value=0.0048  Score=56.61  Aligned_cols=134  Identities=16%  Similarity=0.101  Sum_probs=84.9

Q ss_pred             hhHHHHHHHHhcCCCCCC----CCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEE
Q 009871          318 ESAHLMAAVLARNPTIVA----GKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITK  393 (523)
Q Consensus       318 ~~a~~la~~l~~~~~~~~----~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~  393 (523)
                      +++..|.+||.......+    ..++||+||=+....  +...+.-.|+.+|+++.          ..         .+.
T Consensus        30 dSSK~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~--~s~~~~fdvt~IDLns~----------~~---------~I~   88 (219)
T PF11968_consen   30 DSSKWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNA--CSTSGWFDVTRIDLNSQ----------HP---------GIL   88 (219)
T ss_pred             chhHHHHHHhhhhccccccccccceEEeecccCCCCc--ccccCceeeEEeecCCC----------CC---------Cce
Confidence            578899999987543222    259999999654222  22233346999999761          10         112


Q ss_pred             eeecCCCCcchhhhhhcCCCccEEEEccccCCC---CChHHHHHHHHHHhhccCCCCCCCCCcE-----EEEEEee----
Q 009871          394 RLEWGNRDHIEAIKEENNEGFEVILGTDVSYIP---EAILPLFATAKELTASSNKSLREDQQPA-----FILCHIF----  461 (523)
Q Consensus       394 ~ldw~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~---~~~~~l~~~l~~ll~~~~~~~~~~~~g~-----~~l~~~~----  461 (523)
                      +-|+-+.. +   ...+.++||+|.++=|+-+.   ..--.+++.+.++|         +++|.     +++..+.    
T Consensus        89 qqDFm~rp-l---p~~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL---------~~~g~~~~~~LFlVlP~~Cv~  155 (219)
T PF11968_consen   89 QQDFMERP-L---PKNESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFL---------KPPGLSLFPSLFLVLPLPCVT  155 (219)
T ss_pred             eeccccCC-C---CCCcccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHh---------CCCCccCcceEEEEeCchHhh
Confidence            22333221 0   01135689999999777443   34557888899999         44555     7665554    


Q ss_pred             --cCCChhHHHHHHHHcCCEEEEEcC
Q 009871          462 --RQVDEPSMLSAATQCGFRLVDKWP  485 (523)
Q Consensus       462 --r~~~~~~~~~~~~~~gf~~~~~~~  485 (523)
                        |..+.+.+.+.+...||...+...
T Consensus       156 NSRy~~~~~l~~im~~LGf~~~~~~~  181 (219)
T PF11968_consen  156 NSRYMTEERLREIMESLGFTRVKYKK  181 (219)
T ss_pred             cccccCHHHHHHHHHhCCcEEEEEEe
Confidence              456667888999999999877644

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=97.10  E-value=0.00032  Score=63.84  Aligned_cols=76  Identities=14%  Similarity=0.173  Sum_probs=55.0

Q ss_pred             CCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC--CCcEEEEEeeccCCccCC-CCCCCceeEEE
Q 009871           75 GRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISDDLSR-QISPSSIDIVT  151 (523)
Q Consensus        75 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~~~~-~~~~~~fD~V~  151 (523)
                      .+.++||+=||+|.++...+.++ ..+|+.||.++.+++..+++.+..  ..++..++.|+... +.. ......||+|+
T Consensus        42 ~g~~vLDLFaGSGalGlEALSRG-A~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~-l~~~~~~~~~fDiIf  119 (183)
T PF03602_consen   42 EGARVLDLFAGSGALGLEALSRG-AKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKF-LLKLAKKGEKFDIIF  119 (183)
T ss_dssp             TT-EEEETT-TTSHHHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHH-HHHHHHCTS-EEEEE
T ss_pred             CCCeEEEcCCccCccHHHHHhcC-CCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHH-HHhhcccCCCceEEE
Confidence            68999999999999999988885 357999999999999999987532  23588888886532 100 11367899997


Q ss_pred             E
Q 009871          152 M  152 (523)
Q Consensus       152 ~  152 (523)
                      +
T Consensus       120 l  120 (183)
T PF03602_consen  120 L  120 (183)
T ss_dssp             E
T ss_pred             E
Confidence            7

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=97.07  E-value=0.00072  Score=67.47  Aligned_cols=91  Identities=22%  Similarity=0.238  Sum_probs=54.1

Q ss_pred             HHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhc--------CCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEE
Q 009871          322 LMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAG--------SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITK  393 (523)
Q Consensus       322 ~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~--------~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~  393 (523)
                      ++++++    ...++.+|||..||+|.+...+...        ....++|.|+++.++..++.|+..++...  ....+.
T Consensus        37 l~~~~~----~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~--~~~~i~  110 (311)
T PF02384_consen   37 LMVKLL----NPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDN--SNINII  110 (311)
T ss_dssp             HHHHHH----TT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHC--BGCEEE
T ss_pred             HHHhhh----hccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccc--cccccc
Confidence            444554    3446779999999999877666552        45589999999999999999998766542  112232


Q ss_pred             eeecCCCCcchhhhhhcCCCccEEEEcccc
Q 009871          394 RLEWGNRDHIEAIKEENNEGFEVILGTDVS  423 (523)
Q Consensus       394 ~ldw~~~~~~~~~~~~~~~~fD~Ii~~d~~  423 (523)
                      ..|.-....     ......||+|+++...
T Consensus       111 ~~d~l~~~~-----~~~~~~~D~ii~NPPf  135 (311)
T PF02384_consen  111 QGDSLENDK-----FIKNQKFDVIIGNPPF  135 (311)
T ss_dssp             ES-TTTSHS-----CTST--EEEEEEE--C
T ss_pred             ccccccccc-----cccccccccccCCCCc
Confidence            222211110     0013589999998543

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=97.04  E-value=0.0016  Score=63.08  Aligned_cols=103  Identities=17%  Similarity=0.203  Sum_probs=68.3

Q ss_pred             HHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCC
Q 009871          322 LMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRD  401 (523)
Q Consensus       322 ~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~  401 (523)
                      -+++.+.+.....++..|||+|+|+|.++..++..+ .+|+++|.++.+++.+++....      ..++.+...|.-+.+
T Consensus        17 ~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~~~L~~~~~~------~~~~~vi~~D~l~~~   89 (262)
T PF00398_consen   17 NIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLAKHLKERFAS------NPNVEVINGDFLKWD   89 (262)
T ss_dssp             HHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHHHHHHHHCTT------CSSEEEEES-TTTSC
T ss_pred             HHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhccc-CcceeecCcHhHHHHHHHHhhh------cccceeeecchhccc
Confidence            344555554455588999999999999999998887 8999999999999999876552      256777666655443


Q ss_pred             cchhhhhhcCCCccEEEEccccCCCCChHHHHHHHHH
Q 009871          402 HIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKE  438 (523)
Q Consensus       402 ~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~  438 (523)
                      ....    .......|+++ +.|+  .-.+++..+-.
T Consensus        90 ~~~~----~~~~~~~vv~N-lPy~--is~~il~~ll~  119 (262)
T PF00398_consen   90 LYDL----LKNQPLLVVGN-LPYN--ISSPILRKLLE  119 (262)
T ss_dssp             GGGH----CSSSEEEEEEE-ETGT--GHHHHHHHHHH
T ss_pred             cHHh----hcCCceEEEEE-eccc--chHHHHHHHhh
Confidence            2210    12355677776 5553  23344444444

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=97.04  E-value=0.0026  Score=55.37  Aligned_cols=49  Identities=16%  Similarity=0.143  Sum_probs=41.9

Q ss_pred             CCCCeEEEECCCccHHHHHHHh-----cCCCEEEEEcCChHHHHHHHHHHHhcC
Q 009871          334 VAGKKVLELGCGCGGICSMVAA-----GSADLVVATDGDSIALDLLAQNVTANL  382 (523)
Q Consensus       334 ~~~~~VLElG~G~G~l~~~~a~-----~~~~~V~~~D~~~~~l~~~~~n~~~n~  382 (523)
                      .+..+|+|+|||-|.++..++.     ....+|+++|.++..++.++...+...
T Consensus        24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~   77 (141)
T PF13679_consen   24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLG   77 (141)
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhc
Confidence            4667999999999999999988     556699999999999999888776644

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=97.03  E-value=0.0017  Score=66.51  Aligned_cols=128  Identities=13%  Similarity=0.143  Sum_probs=75.8

Q ss_pred             CcccccchhHHHHHHHHhcCCCC-CCC---CeEEEECCCccHHHHHHHhcCCCEEE--EEcCChHHHHHHHHHHHhcCCC
Q 009871          311 STGLMLWESAHLMAAVLARNPTI-VAG---KKVLELGCGCGGICSMVAAGSADLVV--ATDGDSIALDLLAQNVTANLKP  384 (523)
Q Consensus       311 ~~G~~~W~~a~~la~~l~~~~~~-~~~---~~VLElG~G~G~l~~~~a~~~~~~V~--~~D~~~~~l~~~~~n~~~n~~~  384 (523)
                      +.|.+...++....+.|.+.... ..+   +.+||+|||+|.++..+..++.-.+.  .-|..+..++.|.+    -++.
T Consensus        89 gggt~F~~Ga~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfale----RGvp  164 (506)
T PF03141_consen   89 GGGTMFPHGADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALE----RGVP  164 (506)
T ss_pred             CCCccccCCHHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhh----cCcc
Confidence            44455555665555555544322 122   47899999999999988888643222  12444444444432    1222


Q ss_pred             CCCCceEEEeeecCCCCcchhhhhhcCCCccEEEEccccCCCC-ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecC
Q 009871          385 PFLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPE-AILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ  463 (523)
Q Consensus       385 ~~~~~v~~~~ldw~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~-~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~  463 (523)
                      .....+...+            .+++...||+|-++.|+-... .-.-++-.+.++|         .|||.++++...-.
T Consensus       165 a~~~~~~s~r------------LPfp~~~fDmvHcsrc~i~W~~~~g~~l~evdRvL---------RpGGyfv~S~ppv~  223 (506)
T PF03141_consen  165 AMIGVLGSQR------------LPFPSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVL---------RPGGYFVLSGPPVY  223 (506)
T ss_pred             hhhhhhcccc------------ccCCccchhhhhcccccccchhcccceeehhhhhh---------ccCceEEecCCccc
Confidence            1101110111            256778999999998875422 2234778899999         78999999887643

; GO: 0008168 methyltransferase activity

>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]

Probab=96.97  E-value=0.0017  Score=64.63  Aligned_cols=48  Identities=27%  Similarity=0.268  Sum_probs=43.1

Q ss_pred             eEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCC
Q 009871          338 KVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPP  385 (523)
Q Consensus       338 ~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~  385 (523)
                      .|||+|+|||.++.+++..|+..|++++.=.-|.++|++-...|+.+.
T Consensus        69 ~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~Sd  116 (636)
T KOG1501|consen   69 FVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSD  116 (636)
T ss_pred             EEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCcc
Confidence            689999999977777777799999999988889999999999999873

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=96.94  E-value=0.012  Score=59.55  Aligned_cols=144  Identities=22%  Similarity=0.213  Sum_probs=89.2

Q ss_pred             hHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCC---CEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEee
Q 009871          319 SAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSA---DLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRL  395 (523)
Q Consensus       319 ~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~---~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l  395 (523)
                      +|.+.+..|    +..+|.+|||+.++.|+=+..+|+...   ..|++.|.++.=++.++.|+..-++.    ++.+...
T Consensus       144 sS~l~a~~L----~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~----nv~~~~~  215 (355)
T COG0144         144 ASQLPALVL----DPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVR----NVIVVNK  215 (355)
T ss_pred             HHHHHHHHc----CCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCC----ceEEEec
Confidence            344445444    335789999999999998888888742   45799999999999999999997764    2333322


Q ss_pred             ecCCCCcchhhhhhcCCCccEEEEc-------------cccCCC---------CChHHHHHHHHHHhhccCCCCCCCCCc
Q 009871          396 EWGNRDHIEAIKEENNEGFEVILGT-------------DVSYIP---------EAILPLFATAKELTASSNKSLREDQQP  453 (523)
Q Consensus       396 dw~~~~~~~~~~~~~~~~fD~Ii~~-------------d~~y~~---------~~~~~l~~~l~~ll~~~~~~~~~~~~g  453 (523)
                      |=......    .....+||.|+.-             |+.+..         ..-..++....++|         +|||
T Consensus       216 d~~~~~~~----~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~l---------k~GG  282 (355)
T COG0144         216 DARRLAEL----LPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLL---------KPGG  282 (355)
T ss_pred             cccccccc----ccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhc---------CCCC
Confidence            21111000    0112259999942             111221         13455666777777         6799


Q ss_pred             EEEEEEeecCCCh-hHHHH-HHHHc-CCEEEEE
Q 009871          454 AFILCHIFRQVDE-PSMLS-AATQC-GFRLVDK  483 (523)
Q Consensus       454 ~~~l~~~~r~~~~-~~~~~-~~~~~-gf~~~~~  483 (523)
                      .++.+...-...+ +...+ .++++ +|++..+
T Consensus       283 ~LVYSTCS~~~eENE~vV~~~L~~~~~~~~~~~  315 (355)
T COG0144         283 VLVYSTCSLTPEENEEVVERFLERHPDFELEPV  315 (355)
T ss_pred             EEEEEccCCchhcCHHHHHHHHHhCCCceeecc
Confidence            9987766654443 34444 44444 6766665

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=96.91  E-value=0.0055  Score=60.78  Aligned_cols=74  Identities=23%  Similarity=0.274  Sum_probs=61.8

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCC--CcEEEEEeeccCCccCCCCCCCceeEEE
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQISPSSIDIVT  151 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~V~  151 (523)
                      .++.+|||.=||.|.+++.++..... .|+++|++|.+++..+++.+.+.  ..+..+++|+...    ....+.||-|+
T Consensus       187 ~~GE~V~DmFAGVGpfsi~~Ak~g~~-~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev----~~~~~~aDrIi  261 (341)
T COG2520         187 KEGETVLDMFAGVGPFSIPIAKKGRP-KVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREV----APELGVADRII  261 (341)
T ss_pred             cCCCEEEEccCCcccchhhhhhcCCc-eEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHh----hhccccCCEEE
Confidence            46899999999999999999988533 39999999999999999876542  4588999999876    33337899999


Q ss_pred             E
Q 009871          152 M  152 (523)
Q Consensus       152 ~  152 (523)
                      +
T Consensus       262 m  262 (341)
T COG2520         262 M  262 (341)
T ss_pred             e
Confidence            9

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=96.90  E-value=0.015  Score=53.87  Aligned_cols=129  Identities=13%  Similarity=0.091  Sum_probs=77.8

Q ss_pred             CCeEEEECCCccHHHHHHHhc-CCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCC-
Q 009871          336 GKKVLELGCGCGGICSMVAAG-SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG-  413 (523)
Q Consensus       336 ~~~VLElG~G~G~l~~~~a~~-~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~-  413 (523)
                      +++++|||+|.|.-|..+|-. ...+|+.+|....=+..++.-...-++    .++.+....-   +...+     ... 
T Consensus        68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L----~nv~i~~~Ra---E~~~~-----~~~~  135 (215)
T COG0357          68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGL----ENVEIVHGRA---EEFGQ-----EKKQ  135 (215)
T ss_pred             CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCC----CCeEEehhhH---hhccc-----cccc
Confidence            689999999999544544423 334699999887666666654444333    2344433222   21111     123 


Q ss_pred             ccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCC-hhHHHHHHHHcCCEEEEEcCCCCC
Q 009871          414 FEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVD-EPSMLSAATQCGFRLVDKWPSKNS  489 (523)
Q Consensus       414 fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~-~~~~~~~~~~~gf~~~~~~~~~~~  489 (523)
                      ||+|++--    ...+..++.-+..++         +++|.++........+ ..+...++...|+.+..+..-..+
T Consensus       136 ~D~vtsRA----va~L~~l~e~~~pll---------k~~g~~~~~k~~~~~~e~~e~~~a~~~~~~~~~~~~~~~~p  199 (215)
T COG0357         136 YDVVTSRA----VASLNVLLELCLPLL---------KVGGGFLAYKGLAGKDELPEAEKAILPLGGQVEKVFSLTVP  199 (215)
T ss_pred             CcEEEeeh----ccchHHHHHHHHHhc---------ccCCcchhhhHHhhhhhHHHHHHHHHhhcCcEEEEEEeecC
Confidence            99999863    245777888888888         5566664433332222 235566677788998888664333

>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria

Probab=96.89  E-value=0.002  Score=62.97  Aligned_cols=91  Identities=13%  Similarity=0.101  Sum_probs=65.5

Q ss_pred             hhHHHHhhhhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCcc-CC
Q 009871           62 YLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDL-SR  140 (523)
Q Consensus        62 ~l~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~-~~  140 (523)
                      .+..+.-+.+...++..++|.=-|.|.++..+++..++++|+|+|.++.+++.|+++......++.+++++..++.- ..
T Consensus         7 Vll~Evl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~~l~~~l~   86 (310)
T PF01795_consen    7 VLLKEVLEALNPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFSNLDEYLK   86 (310)
T ss_dssp             TTHHHHHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GGGHHHHHH
T ss_pred             ccHHHHHHhhCcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhccceEEEEeccHHHHHHHHH
Confidence            46667767777788889999999999999999999888999999999999999999876556889999999876420 00


Q ss_pred             CC-CCCceeEEEE
Q 009871          141 QI-SPSSIDIVTM  152 (523)
Q Consensus       141 ~~-~~~~fD~V~~  152 (523)
                      .. ....+|.|+.
T Consensus        87 ~~~~~~~~dgiL~   99 (310)
T PF01795_consen   87 ELNGINKVDGILF   99 (310)
T ss_dssp             HTTTTS-EEEEEE
T ss_pred             HccCCCccCEEEE
Confidence            11 2357899877

The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=96.88  E-value=0.0068  Score=61.33  Aligned_cols=81  Identities=15%  Similarity=0.138  Sum_probs=61.7

Q ss_pred             hhcCCCCCeEEEECCCccccHHHHHhhCC--CCEEEEEeCCHHHHHHHHhccccC-CCcEEEEEeeccCCccCCCCCC-C
Q 009871           70 YFSGAGRKDVLEVGCGAGNTIFPLIAAYP--DVFVYACDFSPRAVNLVMTHKDFT-ETRVSTFVCDLISDDLSRQISP-S  145 (523)
Q Consensus        70 ~~~~~~~~~iLDiGcG~G~~~~~l~~~~~--~~~v~gvD~S~~~l~~a~~~~~~~-~~~v~~~~~d~~~~~~~~~~~~-~  145 (523)
                      ++.+.++.+|||.+++.|.=+.++++..+  +..|+++|+|+.-++..+++.+.. ..++...+.|....  +...+. +
T Consensus       151 ~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~--~~~~~~~~  228 (355)
T COG0144         151 VLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRL--AELLPGGE  228 (355)
T ss_pred             HcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccc--cccccccC
Confidence            34557889999999999999999999865  366799999999999999887543 35567788777643  111222 3


Q ss_pred             ceeEEEE
Q 009871          146 SIDIVTM  152 (523)
Q Consensus       146 ~fD~V~~  152 (523)
                      .||.|++
T Consensus       229 ~fD~iLl  235 (355)
T COG0144         229 KFDRILL  235 (355)
T ss_pred             cCcEEEE
Confidence            5999999

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=96.88  E-value=0.0019  Score=57.09  Aligned_cols=70  Identities=19%  Similarity=0.217  Sum_probs=57.4

Q ss_pred             CCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC-CCcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871           75 GRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT-ETRVSTFVCDLISDDLSRQISPSSIDIVTM  152 (523)
Q Consensus        75 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~-~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~  152 (523)
                      ....+.|+|+|+|.++...+..  .-+|++|+.+|...+.|.++.... ..+++.+.+|+.+.+    |  +..|+|+|
T Consensus        32 a~d~~~DLGaGsGiLs~~Aa~~--A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~----f--e~ADvvic  102 (252)
T COG4076          32 AEDTFADLGAGSGILSVVAAHA--AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYD----F--ENADVVIC  102 (252)
T ss_pred             hhhceeeccCCcchHHHHHHhh--hceEEEEecCcHHHHHhhhcCCCCCCcceEEEeccccccc----c--cccceeHH
Confidence            3478999999999999776666  346999999999999999986433 368999999999773    3  35799999

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=96.85  E-value=0.014  Score=53.39  Aligned_cols=113  Identities=13%  Similarity=0.110  Sum_probs=72.7

Q ss_pred             CCCCeEEEECCCccccHHHHHhh-CCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCcc----CCCCCCCcee
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAA-YPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDL----SRQISPSSID  148 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~-~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~----~~~~~~~~fD  148 (523)
                      .++.+|+|+||-+|..+..+++. .++..|+|+|+.|--          ...++.++++|++..+.    -..+....+|
T Consensus        44 ~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~----------~~~~V~~iq~d~~~~~~~~~l~~~l~~~~~D  113 (205)
T COG0293          44 KPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK----------PIPGVIFLQGDITDEDTLEKLLEALGGAPVD  113 (205)
T ss_pred             cCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc----------cCCCceEEeeeccCccHHHHHHHHcCCCCcc
Confidence            46899999999999999888888 455679999997762          12459999999987532    1123345589


Q ss_pred             EEEE---ccccccceeee--------------cceEEecCCeEEEe-e---CHHHHHHHHHhCCCcEEEEE
Q 009871          149 IVTM---ERLTGKDQKIS--------------ENFYVRGDGTRAFY-F---SNDFLTSLFKENGFDVEELG  198 (523)
Q Consensus       149 ~V~~---~~~~~~~~~~~--------------~~~~~~~~g~~~~~-~---~~~~l~~ll~~~Gf~~~~~~  198 (523)
                      +|+|   .+. .....+.              ...+++++|.+..- |   ..+++...+++ .|+.+++.
T Consensus       114 vV~sD~ap~~-~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~~~~l~~~~~-~F~~v~~~  182 (205)
T COG0293         114 VVLSDMAPNT-SGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGEDFEDLLKALRR-LFRKVKIF  182 (205)
T ss_pred             eEEecCCCCc-CCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCCHHHHHHHHHH-hhceeEEe
Confidence            9998   111 0000000              02267778877542 2   45556666654 47776654

>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology

Probab=96.82  E-value=0.015  Score=56.83  Aligned_cols=135  Identities=14%  Similarity=0.169  Sum_probs=81.1

Q ss_pred             eEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCccEE
Q 009871          338 KVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVI  417 (523)
Q Consensus       338 ~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~fD~I  417 (523)
                      +|+||.||.|++..-+...|...|.++|+++.+++..+.|....          +...|..+....    .+ ...+|+|
T Consensus         2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~~----------~~~~Di~~~~~~----~~-~~~~D~l   66 (275)
T cd00315           2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPNK----------LIEGDITKIDEK----DF-IPDIDLL   66 (275)
T ss_pred             cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCCC----------CccCccccCchh----hc-CCCCCEE
Confidence            69999999998887777778888999999999999998886421          011111111100    11 2479999


Q ss_pred             EEccccCC----------CCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCC-------ChhHHHHHHHHcCCEE
Q 009871          418 LGTDVSYI----------PEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQV-------DEPSMLSAATQCGFRL  480 (523)
Q Consensus       418 i~~d~~y~----------~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~-------~~~~~~~~~~~~gf~~  480 (523)
                      +++...-.          .+....|+..+.++++..        .+.+++.......       ....+.+.+++.|+.+
T Consensus        67 ~~gpPCq~fS~ag~~~~~~d~r~~L~~~~~~~i~~~--------~P~~~v~ENV~g~~~~~~~~~~~~i~~~l~~~GY~~  138 (275)
T cd00315          67 TGGFPCQPFSIAGKRKGFEDTRGTLFFEIIRILKEK--------KPKYFLLENVKGLLTHDNGNTLKVILNTLEELGYNV  138 (275)
T ss_pred             EeCCCChhhhHHhhcCCCCCchHHHHHHHHHHHHhc--------CCCEEEEEcCcchhccCchHHHHHHHHHHHhCCcEE
Confidence            98754332          122334666666777321        2334443333221       1245677788999998


Q ss_pred             EEEcCCCCCCCCcch
Q 009871          481 VDKWPSKNSASPSES  495 (523)
Q Consensus       481 ~~~~~~~~~~~~~~~  495 (523)
                      ....-...+.+..+.
T Consensus       139 ~~~~l~a~~~GvPQ~  153 (275)
T cd00315         139 YWKLLNASDYGVPQN  153 (275)
T ss_pred             EEEEEEHHHcCCCCC
Confidence            665443344444443

Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=96.80  E-value=0.0032  Score=56.65  Aligned_cols=77  Identities=14%  Similarity=0.138  Sum_probs=60.3

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCC--CcEEEEEeeccCCccCCCCCCCceeEEE
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQISPSSIDIVT  151 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~V~  151 (523)
                      -.+.++||+=+|+|.++...+.++ ...++.||.+..++...++|.+...  .+...+..|+... +...-..+.||+|+
T Consensus        42 i~g~~~LDlFAGSGaLGlEAlSRG-A~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~-L~~~~~~~~FDlVf  119 (187)
T COG0742          42 IEGARVLDLFAGSGALGLEALSRG-AARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRA-LKQLGTREPFDLVF  119 (187)
T ss_pred             cCCCEEEEecCCccHhHHHHHhCC-CceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHH-HHhcCCCCcccEEE
Confidence            578999999999999999999886 4579999999999999999875433  6788889898721 11111122599998


Q ss_pred             E
Q 009871          152 M  152 (523)
Q Consensus       152 ~  152 (523)
                      .
T Consensus       120 l  120 (187)
T COG0742         120 L  120 (187)
T ss_pred             e
Confidence            8

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=96.79  E-value=0.016  Score=50.71  Aligned_cols=67  Identities=27%  Similarity=0.421  Sum_probs=47.0

Q ss_pred             EEEECCCccccHHHHHhhCCC-CEEEEEeCCHHHHHHHHhccccCCCc-EEEEEeeccC--CccCCCCCC-CceeEE
Q 009871           79 VLEVGCGAGNTIFPLIAAYPD-VFVYACDFSPRAVNLVMTHKDFTETR-VSTFVCDLIS--DDLSRQISP-SSIDIV  150 (523)
Q Consensus        79 iLDiGcG~G~~~~~l~~~~~~-~~v~gvD~S~~~l~~a~~~~~~~~~~-v~~~~~d~~~--~~~~~~~~~-~~fD~V  150 (523)
                      ++|+|||+|... .+....+. ..++|+|+++.|+..++......... +.+...|...  .    ++.. ..||++
T Consensus        52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~d~~  123 (257)
T COG0500          52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVL----PFEDSASFDLV  123 (257)
T ss_pred             eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCC----CCCCCCceeEE
Confidence            999999999976 34444322 47999999999999966544221111 6788888765  4    4555 489999

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=96.78  E-value=0.0019  Score=57.75  Aligned_cols=70  Identities=24%  Similarity=0.301  Sum_probs=59.2

Q ss_pred             CCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871           75 GRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM  152 (523)
Q Consensus        75 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~  152 (523)
                      .+++|||+|+|+|..+...++.+ ...|++.|+.|..+...+-|.+.++..+.+...|+..       .+..||+++.
T Consensus        79 rgkrVLd~gagsgLvaIAaa~aG-A~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g-------~~~~~Dl~La  148 (218)
T COG3897          79 RGKRVLDLGAGSGLVAIAAARAG-AAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIG-------SPPAFDLLLA  148 (218)
T ss_pred             ccceeeecccccChHHHHHHHhh-hHHHHhcCCChHHHHHhhcchhhccceeEEeeccccC-------CCcceeEEEe
Confidence            57899999999999998887775 3469999999999998888888777888888888852       4678999987

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=96.77  E-value=0.00047  Score=62.92  Aligned_cols=69  Identities=22%  Similarity=0.271  Sum_probs=47.4

Q ss_pred             CCCCeEEEECCCccccHHHHHhhC-CCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCc----cCCCCC--CCc
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAY-PDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDD----LSRQIS--PSS  146 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~-~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~----~~~~~~--~~~  146 (523)
                      ..+.+|||+||++|..+..++++. +...|+|+|+.+.      .    ....+.++++|+.+..    +...+.  .+.
T Consensus        22 ~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~------~----~~~~~~~i~~d~~~~~~~~~i~~~~~~~~~~   91 (181)
T PF01728_consen   22 GKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM------D----PLQNVSFIQGDITNPENIKDIRKLLPESGEK   91 (181)
T ss_dssp             TTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST------G----S-TTEEBTTGGGEEEEHSHHGGGSHGTTTCS
T ss_pred             ccccEEEEcCCcccceeeeeeecccccceEEEEecccc------c----cccceeeeecccchhhHHHhhhhhccccccC
Confidence            356899999999999999999985 5689999999887      1    1134555566654321    111122  268


Q ss_pred             eeEEEE
Q 009871          147 IDIVTM  152 (523)
Q Consensus       147 fD~V~~  152 (523)
                      ||+|+|
T Consensus        92 ~dlv~~   97 (181)
T PF01728_consen   92 FDLVLS   97 (181)
T ss_dssp             ESEEEE
T ss_pred             cceecc
Confidence            999999

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=96.76  E-value=0.0026  Score=60.91  Aligned_cols=77  Identities=22%  Similarity=0.292  Sum_probs=57.8

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccc-----cCCCcEEEEEeeccCCccCCCCCCCcee
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKD-----FTETRVSTFVCDLISDDLSRQISPSSID  148 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~-----~~~~~v~~~~~d~~~~~~~~~~~~~~fD  148 (523)
                      +++.+||=||-|.|..+..+++..+..+|+.||+++.+++.|++...     ...++++++.+|.... +. .....+||
T Consensus        75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~-l~-~~~~~~yD  152 (246)
T PF01564_consen   75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKF-LK-ETQEEKYD  152 (246)
T ss_dssp             SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHH-HH-TSSST-EE
T ss_pred             CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHH-HH-hccCCccc
Confidence            57899999999999999999887656789999999999999998643     2357899999998642 00 11122899


Q ss_pred             EEEE
Q 009871          149 IVTM  152 (523)
Q Consensus       149 ~V~~  152 (523)
                      +|+.
T Consensus       153 vIi~  156 (246)
T PF01564_consen  153 VIIV  156 (246)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9999

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=96.76  E-value=0.077  Score=48.00  Aligned_cols=150  Identities=19%  Similarity=0.208  Sum_probs=92.9

Q ss_pred             cccchhHHH-HHHHHhc---CCCCCCCCeEEEECCCccHHHHHHHhc-CCCEEEEEcCChHHHHHHHHHH-HhcCCCCCC
Q 009871          314 LMLWESAHL-MAAVLAR---NPTIVAGKKVLELGCGCGGICSMVAAG-SADLVVATDGDSIALDLLAQNV-TANLKPPFL  387 (523)
Q Consensus       314 ~~~W~~a~~-la~~l~~---~~~~~~~~~VLElG~G~G~l~~~~a~~-~~~~V~~~D~~~~~l~~~~~n~-~~n~~~~~~  387 (523)
                      .+.|+.-.- ||..++.   +..+.+|.+||=||+-+|-..+.++.- +...|++++.++.+..-+-.-+ +.+++    
T Consensus        51 YR~Wnp~RSKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~Ni----  126 (231)
T COG1889          51 YREWNPRRSKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPNI----  126 (231)
T ss_pred             eeeeCcchhHHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCCCc----
Confidence            567865432 4444443   345668999999999999777887776 4458999999997664433222 22221    


Q ss_pred             CceEEEeeecCCCCcchhhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCCh-
Q 009871          388 AKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDE-  466 (523)
Q Consensus       388 ~~v~~~~ldw~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~-  466 (523)
                        +..    .+++...+....+ -+..|+|.. |+ -.+....-+...+..+|         +++|.++++...|..+. 
T Consensus       127 --~PI----L~DA~~P~~Y~~~-Ve~VDviy~-DV-AQp~Qa~I~~~Na~~FL---------k~~G~~~i~iKArSIdvT  188 (231)
T COG1889         127 --IPI----LEDARKPEKYRHL-VEKVDVIYQ-DV-AQPNQAEILADNAEFFL---------KKGGYVVIAIKARSIDVT  188 (231)
T ss_pred             --eee----ecccCCcHHhhhh-cccccEEEE-ec-CCchHHHHHHHHHHHhc---------ccCCeEEEEEEeeccccc
Confidence              111    1222111111111 124666655 32 23667788888999999         66999999888887542 


Q ss_pred             ---hHHH----HHHHHcCCEEEEEcC
Q 009871          467 ---PSML----SAATQCGFRLVDKWP  485 (523)
Q Consensus       467 ---~~~~----~~~~~~gf~~~~~~~  485 (523)
                         .+++    +.+++.||++.++..
T Consensus       189 ~dp~~vf~~ev~kL~~~~f~i~e~~~  214 (231)
T COG1889         189 ADPEEVFKDEVEKLEEGGFEILEVVD  214 (231)
T ss_pred             CCHHHHHHHHHHHHHhcCceeeEEec
Confidence               3333    456789999988765

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=96.75  E-value=0.0058  Score=59.48  Aligned_cols=77  Identities=16%  Similarity=0.101  Sum_probs=46.7

Q ss_pred             CCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC---CCcEEEEEeeccCCccC-CCCCCCceeEEE
Q 009871           76 RKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT---ETRVSTFVCDLISDDLS-RQISPSSIDIVT  151 (523)
Q Consensus        76 ~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~---~~~v~~~~~d~~~~~~~-~~~~~~~fD~V~  151 (523)
                      ..++||||||...+--.|..+..+++++|.|+++..++.|+++...+   ..+|+++...-...=+. ...+.+.||+.+
T Consensus       103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dftm  182 (299)
T PF05971_consen  103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFTM  182 (299)
T ss_dssp             --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEEE
T ss_pred             ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEEe
Confidence            56899999999987544544433899999999999999999987554   46788765532211011 012346899999


Q ss_pred             E
Q 009871          152 M  152 (523)
Q Consensus       152 ~  152 (523)
                      |
T Consensus       183 C  183 (299)
T PF05971_consen  183 C  183 (299)
T ss_dssp             E
T ss_pred             c
Confidence            9

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=96.75  E-value=0.026  Score=49.26  Aligned_cols=104  Identities=15%  Similarity=0.195  Sum_probs=64.3

Q ss_pred             EEEECCCccHHHHHHHhcCC--CEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcC-CCcc
Q 009871          339 VLELGCGCGGICSMVAAGSA--DLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENN-EGFE  415 (523)
Q Consensus       339 VLElG~G~G~l~~~~a~~~~--~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~-~~fD  415 (523)
                      ++|+|||+|... .++....  ..++++|.++.++..++..... ...   ..+.+...++...     ..++.. ..||
T Consensus        52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~-----~~~~~~~~~~d  121 (257)
T COG0500          52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG-AGL---GLVDFVVADALGG-----VLPFEDSASFD  121 (257)
T ss_pred             eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-cCC---CceEEEEeccccC-----CCCCCCCCcee
Confidence            999999999654 3334333  3799999999999885443322 111   1134444444331     012223 3799


Q ss_pred             EEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec
Q 009871          416 VILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFR  462 (523)
Q Consensus       416 ~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r  462 (523)
                      ++......+... ...++..+.+.+         +++|.+++.....
T Consensus       122 ~~~~~~~~~~~~-~~~~~~~~~~~l---------~~~g~~~~~~~~~  158 (257)
T COG0500         122 LVISLLVLHLLP-PAKALRELLRVL---------KPGGRLVLSDLLR  158 (257)
T ss_pred             EEeeeeehhcCC-HHHHHHHHHHhc---------CCCcEEEEEeccC
Confidence            994433333344 788899999999         6688888776653

>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=96.71  E-value=0.031  Score=51.37  Aligned_cols=123  Identities=13%  Similarity=0.087  Sum_probs=88.5

Q ss_pred             CCCeEEEECCCccHHHHHHHhcC-CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhc-CC
Q 009871          335 AGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEEN-NE  412 (523)
Q Consensus       335 ~~~~VLElG~G~G~l~~~~a~~~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~-~~  412 (523)
                      .+.++.|+||-=|.++..+...+ +..+++.|+++..++.|.+|+..|++.   +++.+..+|--.        .+. ..
T Consensus        16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~---~~i~vr~~dgl~--------~l~~~d   84 (226)
T COG2384          16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLS---ERIDVRLGDGLA--------VLELED   84 (226)
T ss_pred             cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCc---ceEEEeccCCcc--------ccCccC
Confidence            45569999999999999999985 568999999999999999999999886   677776554321        122 33


Q ss_pred             CccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhHHHHHHHHcCCEEEE
Q 009871          413 GFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLVD  482 (523)
Q Consensus       413 ~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~~~~~~~~gf~~~~  482 (523)
                      .+|+|+.+-  ..-..+...+..-...|         +.-..++++...   ....+.+.+.+.+|.+..
T Consensus        85 ~~d~ivIAG--MGG~lI~~ILee~~~~l---------~~~~rlILQPn~---~~~~LR~~L~~~~~~I~~  140 (226)
T COG2384          85 EIDVIVIAG--MGGTLIREILEEGKEKL---------KGVERLILQPNI---HTYELREWLSANSYEIKA  140 (226)
T ss_pred             CcCEEEEeC--CcHHHHHHHHHHhhhhh---------cCcceEEECCCC---CHHHHHHHHHhCCceeee
Confidence            799988663  22345666666666666         223467776433   345677788888888754

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=96.71  E-value=0.0023  Score=68.71  Aligned_cols=78  Identities=15%  Similarity=0.212  Sum_probs=52.8

Q ss_pred             CCCeEEEECCCccccHHHHHhhCC--------CCEEEEEeCCHHHHHHHHhccccCC-CcEEEEEeeccCCccCC-CCCC
Q 009871           75 GRKDVLEVGCGAGNTIFPLIAAYP--------DVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSR-QISP  144 (523)
Q Consensus        75 ~~~~iLDiGcG~G~~~~~l~~~~~--------~~~v~gvD~S~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~-~~~~  144 (523)
                      ...+|||.|||+|.++..++.+.+        ...++|+|+++.++..|+.+..... ..++..+.|.....+.. .-..
T Consensus        31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~  110 (524)
T TIGR02987        31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYL  110 (524)
T ss_pred             cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccccccccc
Confidence            456899999999999998887643        2579999999999999988653221 23444544433211100 1113


Q ss_pred             CceeEEEE
Q 009871          145 SSIDIVTM  152 (523)
Q Consensus       145 ~~fD~V~~  152 (523)
                      +.||+|++
T Consensus       111 ~~fD~IIg  118 (524)
T TIGR02987       111 DLFDIVIT  118 (524)
T ss_pred             CcccEEEe
Confidence            57999999

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein

Probab=96.68  E-value=0.0043  Score=56.93  Aligned_cols=100  Identities=16%  Similarity=0.289  Sum_probs=64.3

Q ss_pred             CCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEEE---
Q 009871           76 RKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM---  152 (523)
Q Consensus        76 ~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~---  152 (523)
                      ..++|||||=+..+...   ..+-..|+.||+.+.       .       -.+.+.|+.+..+|. -+.++||+|.+   
T Consensus        52 ~lrlLEVGals~~N~~s---~~~~fdvt~IDLns~-------~-------~~I~qqDFm~rplp~-~~~e~FdvIs~SLV  113 (219)
T PF11968_consen   52 KLRLLEVGALSTDNACS---TSGWFDVTRIDLNSQ-------H-------PGILQQDFMERPLPK-NESEKFDVISLSLV  113 (219)
T ss_pred             cceEEeecccCCCCccc---ccCceeeEEeecCCC-------C-------CCceeeccccCCCCC-CcccceeEEEEEEE
Confidence            46899999986665433   222345999999873       1       135677777664432 34779999999   


Q ss_pred             ccc----------cccceeeecceEEecCCe-----E-----------EEeeCHHHHHHHHHhCCCcEEEEE
Q 009871          153 ERL----------TGKDQKISENFYVRGDGT-----R-----------AFYFSNDFLTSLFKENGFDVEELG  198 (523)
Q Consensus       153 ~~~----------~~~~~~~~~~~~~~~~g~-----~-----------~~~~~~~~l~~ll~~~Gf~~~~~~  198 (523)
                      ..|          ......     +++++|.     +           ..|++.+.+..++...||..++.+
T Consensus       114 LNfVP~p~~RG~Ml~r~~~-----fL~~~g~~~~~~LFlVlP~~Cv~NSRy~~~~~l~~im~~LGf~~~~~~  180 (219)
T PF11968_consen  114 LNFVPDPKQRGEMLRRAHK-----FLKPPGLSLFPSLFLVLPLPCVTNSRYMTEERLREIMESLGFTRVKYK  180 (219)
T ss_pred             EeeCCCHHHHHHHHHHHHH-----HhCCCCccCcceEEEEeCchHhhcccccCHHHHHHHHHhCCcEEEEEE
Confidence            111          111111     3444444     2           235689999999999999987664

>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]

Probab=96.68  E-value=0.007  Score=58.17  Aligned_cols=92  Identities=13%  Similarity=0.105  Sum_probs=73.1

Q ss_pred             hhhHHHHhhhhcCCCCCeEEEECCCccccHHHHHhhCC-CCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCcc-
Q 009871           61 HYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYP-DVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDL-  138 (523)
Q Consensus        61 ~~l~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~-~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~-  138 (523)
                      ..|..+.-+.+...+++..+|.=-|.|.++..++++++ ..+++|+|-++.+++.|++.......++.+++.+..++.. 
T Consensus         9 pVLl~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~~l~~~   88 (314)
T COG0275           9 PVLLNEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFANLAEA   88 (314)
T ss_pred             chHHHHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHHHHHHH
Confidence            34667776777778889999999999999999999976 4569999999999999999876556789999988765421 


Q ss_pred             CCCCCCCceeEEEE
Q 009871          139 SRQISPSSIDIVTM  152 (523)
Q Consensus       139 ~~~~~~~~fD~V~~  152 (523)
                      .....-+++|.|+.
T Consensus        89 l~~~~i~~vDGiL~  102 (314)
T COG0275          89 LKELGIGKVDGILL  102 (314)
T ss_pred             HHhcCCCceeEEEE
Confidence            01123468999988

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=96.65  E-value=0.0031  Score=64.00  Aligned_cols=74  Identities=11%  Similarity=0.158  Sum_probs=58.0

Q ss_pred             CCeEEEECCCccccHHHHHhhCCC-CEEEEEeCCHHHHHHHHhccccCC-CcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871           76 RKDVLEVGCGAGNTIFPLIAAYPD-VFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQISPSSIDIVTM  152 (523)
Q Consensus        76 ~~~iLDiGcG~G~~~~~l~~~~~~-~~v~gvD~S~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~V~~  152 (523)
                      +.+|||+-||+|..+..++.+.++ .+|+++|+++.+++.+++|.+.+. .++++.+.|+...- .  .....||+|..
T Consensus        45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l-~--~~~~~fDvIdl  120 (374)
T TIGR00308        45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVL-R--YRNRKFHVIDI  120 (374)
T ss_pred             CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHH-H--HhCCCCCEEEe
Confidence            358999999999999999988433 579999999999999999886543 35888898887541 1  11357999966

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]

Probab=96.65  E-value=0.00014  Score=65.13  Aligned_cols=42  Identities=19%  Similarity=0.407  Sum_probs=37.4

Q ss_pred             CCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhc
Q 009871           75 GRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTH  118 (523)
Q Consensus        75 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~  118 (523)
                      .+.++||+|+|.|..+..++..+..  |++.++|..|..+.+++
T Consensus       112 ~~~~lLDlGAGdGeit~~m~p~fee--vyATElS~tMr~rL~kk  153 (288)
T KOG3987|consen  112 EPVTLLDLGAGDGEITLRMAPTFEE--VYATELSWTMRDRLKKK  153 (288)
T ss_pred             CCeeEEeccCCCcchhhhhcchHHH--HHHHHhhHHHHHHHhhc
Confidence            4578999999999999999888655  99999999999998875

>KOG2730 consensus Methylase [General function prediction only]

Probab=96.49  E-value=0.0034  Score=57.11  Aligned_cols=91  Identities=13%  Similarity=0.198  Sum_probs=67.4

Q ss_pred             HHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCC
Q 009871          321 HLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNR  400 (523)
Q Consensus       321 ~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~  400 (523)
                      ..+|.......   .-..|+|.-||.|+-....|.+++ .|+++|+||.-+..|++|++..|+.   .+|.+.+.||-+.
T Consensus        83 ~~iA~~v~~~~---~~~~iidaf~g~gGntiqfa~~~~-~VisIdiDPikIa~AkhNaeiYGI~---~rItFI~GD~ld~  155 (263)
T KOG2730|consen   83 EHIANRVVACM---NAEVIVDAFCGVGGNTIQFALQGP-YVIAIDIDPVKIACARHNAEVYGVP---DRITFICGDFLDL  155 (263)
T ss_pred             HHHHHHHHHhc---CcchhhhhhhcCCchHHHHHHhCC-eEEEEeccHHHHHHHhccceeecCC---ceeEEEechHHHH
Confidence            34444444332   334799999999999999999976 5999999999999999999999997   5899999998653


Q ss_pred             CcchhhhhhcCCCccEEEEcc
Q 009871          401 DHIEAIKEENNEGFEVILGTD  421 (523)
Q Consensus       401 ~~~~~~~~~~~~~fD~Ii~~d  421 (523)
                      -  ..+ .+....+|+|..+.
T Consensus       156 ~--~~l-q~~K~~~~~vf~sp  173 (263)
T KOG2730|consen  156 A--SKL-KADKIKYDCVFLSP  173 (263)
T ss_pred             H--HHH-hhhhheeeeeecCC
Confidence            2  111 22233467888664

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=96.49  E-value=0.058  Score=53.03  Aligned_cols=133  Identities=11%  Similarity=0.089  Sum_probs=81.2

Q ss_pred             CCCeEEEECCCccHHHHHHHhcC-CCEEEEEcCChHHHHHHHHHH---HhcCCCCCCCceEEEeeecCCCCcchhhhhhc
Q 009871          335 AGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNV---TANLKPPFLAKLITKRLEWGNRDHIEAIKEEN  410 (523)
Q Consensus       335 ~~~~VLElG~G~G~l~~~~a~~~-~~~V~~~D~~~~~l~~~~~n~---~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~  410 (523)
                      .-.+||=||-|-|.-...+.+.. ..+|+.+|+||.|++.+++|.   ..|..+....++++..-|-     ..=+ .-.
T Consensus       289 ~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDA-----f~wl-r~a  362 (508)
T COG4262         289 GARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDA-----FQWL-RTA  362 (508)
T ss_pred             ccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccH-----HHHH-Hhh
Confidence            34689999999994445555553 569999999999999999764   3455554556666653221     1111 112


Q ss_pred             CCCccEEEEccccCC-CC-----ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChh---HHHHHHHHcCCEEE
Q 009871          411 NEGFEVILGTDVSYI-PE-----AILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEP---SMLSAATQCGFRLV  481 (523)
Q Consensus       411 ~~~fD~Ii~~d~~y~-~~-----~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~---~~~~~~~~~gf~~~  481 (523)
                      ...||+||.- ..-- ..     .-.++-..+++.|         +++|.+++-...--...+   .+...++++|+.+.
T Consensus       363 ~~~fD~vIVD-l~DP~tps~~rlYS~eFY~ll~~~l---------~e~Gl~VvQags~y~tp~vfw~i~aTik~AG~~~~  432 (508)
T COG4262         363 ADMFDVVIVD-LPDPSTPSIGRLYSVEFYRLLSRHL---------AETGLMVVQAGSPYFTPRVFWRIDATIKSAGYRVW  432 (508)
T ss_pred             cccccEEEEe-CCCCCCcchhhhhhHHHHHHHHHhc---------CcCceEEEecCCCccCCceeeeehhHHHhCcceee
Confidence            4589999963 2111 11     1234555566666         568888875544222222   34577889998875


Q ss_pred             EE
Q 009871          482 DK  483 (523)
Q Consensus       482 ~~  483 (523)
                      -.
T Consensus       433 Py  434 (508)
T COG4262         433 PY  434 (508)
T ss_pred             ee
Confidence            43

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=96.48  E-value=0.0088  Score=59.83  Aligned_cols=75  Identities=13%  Similarity=0.247  Sum_probs=59.4

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCC--------------------------------C-------EEEEEeCCHHHHHH
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPD--------------------------------V-------FVYACDFSPRAVNL  114 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~--------------------------------~-------~v~gvD~S~~~l~~  114 (523)
                      .++..++|-=||+|.++...+-..++                                +       .++|+|+++.||+.
T Consensus       190 ~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~  269 (381)
T COG0116         190 KPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEG  269 (381)
T ss_pred             CCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHH
Confidence            34568999999999999877766532                                1       27799999999999


Q ss_pred             HHhccccC--CCcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871          115 VMTHKDFT--ETRVSTFVCDLISDDLSRQISPSSIDIVTM  152 (523)
Q Consensus       115 a~~~~~~~--~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~  152 (523)
                      |+.|+...  ...++|.++|+..+  ..++  +.+|+|+|
T Consensus       270 Ak~NA~~AGv~d~I~f~~~d~~~l--~~~~--~~~gvvI~  305 (381)
T COG0116         270 AKANARAAGVGDLIEFKQADATDL--KEPL--EEYGVVIS  305 (381)
T ss_pred             HHHHHHhcCCCceEEEEEcchhhC--CCCC--CcCCEEEe
Confidence            99987543  46799999999966  2222  78999999

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=96.42  E-value=0.0072  Score=55.98  Aligned_cols=81  Identities=16%  Similarity=0.190  Sum_probs=48.3

Q ss_pred             hcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccc----------cCCCcEEEEEeeccCCccCC
Q 009871           71 FSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKD----------FTETRVSTFVCDLISDDLSR  140 (523)
Q Consensus        71 ~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~----------~~~~~v~~~~~d~~~~~~~~  140 (523)
                      +...++...+|||||.|......+-..+-.+++||++.+...+.|+....          ....++++.++|+.+.++..
T Consensus        38 ~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~  117 (205)
T PF08123_consen   38 LNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFVK  117 (205)
T ss_dssp             TT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHHH
T ss_pred             hCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhHh
Confidence            34467889999999999999887766543459999999998888875321          12356788888887542110


Q ss_pred             CCCCCceeEEEE
Q 009871          141 QISPSSIDIVTM  152 (523)
Q Consensus       141 ~~~~~~fD~V~~  152 (523)
                      . .-...|+|++
T Consensus       118 ~-~~s~AdvVf~  128 (205)
T PF08123_consen  118 D-IWSDADVVFV  128 (205)
T ss_dssp             H-HGHC-SEEEE
T ss_pred             h-hhcCCCEEEE
Confidence            0 0124688877

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=96.39  E-value=0.012  Score=57.42  Aligned_cols=111  Identities=13%  Similarity=0.124  Sum_probs=67.5

Q ss_pred             CCCCCCeEEEECCCccHHHHHHHhc-C--CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhh
Q 009871          332 TIVAGKKVLELGCGCGGICSMVAAG-S--ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKE  408 (523)
Q Consensus       332 ~~~~~~~VLElG~G~G~l~~~~a~~-~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~  408 (523)
                      ..+.-++|||+|.|.| .++.++.. .  ...++.++.|+. +...-..+..|...        ...+|...+-.....+
T Consensus       110 ~dfapqsiLDvG~GPg-tgl~A~n~i~Pdl~sa~ile~sp~-lrkV~~tl~~nv~t--------~~td~r~s~vt~dRl~  179 (484)
T COG5459         110 PDFAPQSILDVGAGPG-TGLWALNDIWPDLKSAVILEASPA-LRKVGDTLAENVST--------EKTDWRASDVTEDRLS  179 (484)
T ss_pred             CCcCcchhhccCCCCc-hhhhhhcccCCCchhhhhhccCHH-HHHHHHHHHhhccc--------ccCCCCCCccchhccC
Confidence            4467788999999998 55544433 2  347888888873 34444444544332        2355655432222122


Q ss_pred             hc-CCCccEEEEccccCCCCC---hHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee
Q 009871          409 EN-NEGFEVILGTDVSYIPEA---ILPLFATAKELTASSNKSLREDQQPAFILCHIF  461 (523)
Q Consensus       409 ~~-~~~fD~Ii~~d~~y~~~~---~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~  461 (523)
                      ++ ...|++|+..|-+.....   +...++.+..++         .|||.+++|...
T Consensus       180 lp~ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~---------~~gg~lVivErG  227 (484)
T COG5459         180 LPAADLYTLAIVLDELLPDGNEKPIQVNIERLWNLL---------APGGHLVIVERG  227 (484)
T ss_pred             CCccceeehhhhhhhhccccCcchHHHHHHHHHHhc---------cCCCeEEEEeCC
Confidence            22 347899888877666443   444566666666         579999998755

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=96.30  E-value=0.017  Score=55.62  Aligned_cols=98  Identities=16%  Similarity=0.199  Sum_probs=62.5

Q ss_pred             cccccccchhh---hHHHH-hhhhcCC--CCCeEEEECCCcccc----HHHHHhhCC-----CCEEEEEeCCHHHHHHHH
Q 009871           52 HQDRFFKDRHY---LDKEW-GRYFSGA--GRKDVLEVGCGAGNT----IFPLIAAYP-----DVFVYACDFSPRAVNLVM  116 (523)
Q Consensus        52 ~~~~f~~~~~~---l~~~~-~~~~~~~--~~~~iLDiGcG~G~~----~~~l~~~~~-----~~~v~gvD~S~~~l~~a~  116 (523)
                      +...||.+.+.   +.+++ |.++...  ..-+|.-+||+||--    +..|.+..+     ..+|+|+|+|..+|+.|+
T Consensus        67 n~T~FFR~~~~f~~l~~~v~p~l~~~~~~~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~  146 (268)
T COG1352          67 NVTEFFRDPEHFEELRDEVLPELVKRKKGRPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKAR  146 (268)
T ss_pred             ccchhccCcHHHHHHHHHHHHHHHhhccCCceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHh
Confidence            44666655432   22222 3333322  367899999999964    444555553     589999999999999998


Q ss_pred             hcc-c-----c-------------C-C----------CcEEEEEeeccCCccCCCCCCCceeEEEEc
Q 009871          117 THK-D-----F-------------T-E----------TRVSTFVCDLISDDLSRQISPSSIDIVTME  153 (523)
Q Consensus       117 ~~~-~-----~-------------~-~----------~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~  153 (523)
                      +=. .     .             . .          ..|.|.+.|+...    +...+.||+|+|.
T Consensus       147 ~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~----~~~~~~fD~IfCR  209 (268)
T COG1352         147 AGIYPSRELLRGLPPELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDD----SPFLGKFDLIFCR  209 (268)
T ss_pred             cCCCChhHhhccCCHHHHhhhEeecCCCcEEEChHHhcccEEeecCCCCC----ccccCCCCEEEEc
Confidence            611 0     0             0 0          2467777777655    2246679999993

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=96.28  E-value=0.0095  Score=59.03  Aligned_cols=62  Identities=18%  Similarity=0.150  Sum_probs=46.9

Q ss_pred             CCCCeEEEECCCccccHHHHHhhC----CCCEEEEEeCCHHHHHHHHhccc-cCCCcEEE--EEeeccC
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAY----PDVFVYACDFSPRAVNLVMTHKD-FTETRVST--FVCDLIS  135 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~----~~~~v~gvD~S~~~l~~a~~~~~-~~~~~v~~--~~~d~~~  135 (523)
                      +++..|+|+|||+|.-+..|++..    +..++++||+|..+++.+.++.. ..-+.+.+  +++|..+
T Consensus        75 ~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~  143 (319)
T TIGR03439        75 PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDD  143 (319)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHH
Confidence            456689999999999987776653    35789999999999999988765 33344444  6777754

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=96.25  E-value=0.0063  Score=59.59  Aligned_cols=80  Identities=18%  Similarity=0.120  Sum_probs=61.9

Q ss_pred             hcCCCCCeEEEECCCccccHHHHHhhCC-CCEEEEEeCCHHHHHHHHhcccc-CCCcEEEEEeeccCCccCCCCCCCcee
Q 009871           71 FSGAGRKDVLEVGCGAGNTIFPLIAAYP-DVFVYACDFSPRAVNLVMTHKDF-TETRVSTFVCDLISDDLSRQISPSSID  148 (523)
Q Consensus        71 ~~~~~~~~iLDiGcG~G~~~~~l~~~~~-~~~v~gvD~S~~~l~~a~~~~~~-~~~~v~~~~~d~~~~~~~~~~~~~~fD  148 (523)
                      +.+.++.+|||+++|.|.=+..+++... ...|++.|+++.-+...+++... ...++.....|......  ......||
T Consensus        81 L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~--~~~~~~fd  158 (283)
T PF01189_consen   81 LDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDP--KKPESKFD  158 (283)
T ss_dssp             HTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHH--HHHTTTEE
T ss_pred             ccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccc--cccccccc
Confidence            4557888999999999999999999854 67999999999999999887643 34677777777765411  12234699


Q ss_pred             EEEE
Q 009871          149 IVTM  152 (523)
Q Consensus       149 ~V~~  152 (523)
                      .|+.
T Consensus       159 ~Vlv  162 (283)
T PF01189_consen  159 RVLV  162 (283)
T ss_dssp             EEEE
T ss_pred             hhhc
Confidence            9999

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]

Probab=96.20  E-value=0.014  Score=53.03  Aligned_cols=97  Identities=13%  Similarity=0.146  Sum_probs=70.1

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEEE-
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM-  152 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~-  152 (523)
                      .++++||.||-|-|.....+.++.|.- =+-|+..|..++..+...-..-.+|-...+-.++  ....++++.||.|+- 
T Consensus       100 tkggrvLnVGFGMgIidT~iQe~~p~~-H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeD--vl~~L~d~~FDGI~yD  176 (271)
T KOG1709|consen  100 TKGGRVLNVGFGMGIIDTFIQEAPPDE-HWIIEAHPDVLKRMRDWGWREKENVIILEGRWED--VLNTLPDKHFDGIYYD  176 (271)
T ss_pred             hCCceEEEeccchHHHHHHHhhcCCcc-eEEEecCHHHHHHHHhcccccccceEEEecchHh--hhccccccCcceeEee
Confidence            688999999999999998887776643 4568999999999998765444667777665543  222577899999988 


Q ss_pred             ---------ccccccceeeecceEEecCCeEEEee
Q 009871          153 ---------ERLTGKDQKISENFYVRGDGTRAFYF  178 (523)
Q Consensus       153 ---------~~~~~~~~~~~~~~~~~~~g~~~~~~  178 (523)
                               ..|.+..-+     .++|+|.+.||-
T Consensus       177 Ty~e~yEdl~~~hqh~~r-----LLkP~gv~SyfN  206 (271)
T KOG1709|consen  177 TYSELYEDLRHFHQHVVR-----LLKPEGVFSYFN  206 (271)
T ss_pred             chhhHHHHHHHHHHHHhh-----hcCCCceEEEec
Confidence                     222222222     678888888753

>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.15  E-value=0.015  Score=53.70  Aligned_cols=79  Identities=18%  Similarity=0.244  Sum_probs=61.6

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCC-CCEEEEEeCCHHHHHHHHhcccc--CCCcEEEEEeeccCC-c-cCCCCCCCcee
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYP-DVFVYACDFSPRAVNLVMTHKDF--TETRVSTFVCDLISD-D-LSRQISPSSID  148 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~-~~~v~gvD~S~~~l~~a~~~~~~--~~~~v~~~~~d~~~~-~-~~~~~~~~~fD  148 (523)
                      -.+++.||||.=||..++.++...| +++|+++|+++...+.+.+..+.  ....+++++++..+. + +-...+.++||
T Consensus        72 ~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfD  151 (237)
T KOG1663|consen   72 LNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFD  151 (237)
T ss_pred             hCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCcee
Confidence            4678999999999999999998855 68999999999999999775432  246799999987641 1 11123578999


Q ss_pred             EEEE
Q 009871          149 IVTM  152 (523)
Q Consensus       149 ~V~~  152 (523)
                      .+|.
T Consensus       152 faFv  155 (237)
T KOG1663|consen  152 FAFV  155 (237)
T ss_pred             EEEE
Confidence            9987

>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]

Probab=96.09  E-value=0.013  Score=59.00  Aligned_cols=106  Identities=17%  Similarity=0.202  Sum_probs=75.1

Q ss_pred             CCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCC
Q 009871          333 IVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNE  412 (523)
Q Consensus       333 ~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~  412 (523)
                      ..++..++|+|||.|+...+.+......+++.|.++.-+.....-.....+.. ...+  ..-+..+.       ++++.
T Consensus       108 ~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~-k~~~--~~~~~~~~-------~fedn  177 (364)
T KOG1269|consen  108 CFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDN-KCNF--VVADFGKM-------PFEDN  177 (364)
T ss_pred             CcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhh-hcce--ehhhhhcC-------CCCcc
Confidence            34666899999999988888888877789999998865544433222222221 1122  22222221       34567


Q ss_pred             CccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEE
Q 009871          413 GFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFIL  457 (523)
Q Consensus       413 ~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l  457 (523)
                      .||.+-+.|+.-+......+++.+.+.+         +|||.++.
T Consensus       178 ~fd~v~~ld~~~~~~~~~~~y~Ei~rv~---------kpGG~~i~  213 (364)
T KOG1269|consen  178 TFDGVRFLEVVCHAPDLEKVYAEIYRVL---------KPGGLFIV  213 (364)
T ss_pred             ccCcEEEEeecccCCcHHHHHHHHhccc---------CCCceEEe
Confidence            9999999999999999999999999999         67888775

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=96.08  E-value=0.098  Score=47.34  Aligned_cols=80  Identities=19%  Similarity=0.317  Sum_probs=56.9

Q ss_pred             hcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEE
Q 009871           71 FSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIV  150 (523)
Q Consensus        71 ~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V  150 (523)
                      ++..++.+||=+|+-+|....+++.-.+...|+||++|+.+....-..+.. ..|+--+..|+....--..+ =+.+|+|
T Consensus        72 ~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~-R~Ni~PIL~DA~~P~~Y~~~-Ve~VDvi  149 (231)
T COG1889          72 FPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEK-RPNIIPILEDARKPEKYRHL-VEKVDVI  149 (231)
T ss_pred             CCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHh-CCCceeeecccCCcHHhhhh-cccccEE
Confidence            456789999999999999999999987778899999999876443322211 15677788888643110011 2458999


Q ss_pred             EE
Q 009871          151 TM  152 (523)
Q Consensus       151 ~~  152 (523)
                      +.
T Consensus       150 y~  151 (231)
T COG1889         150 YQ  151 (231)
T ss_pred             EE
Confidence            88

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=95.88  E-value=0.056  Score=53.61  Aligned_cols=113  Identities=15%  Similarity=0.053  Sum_probs=67.9

Q ss_pred             CCCeEEEECCCccHHHHHHHh----c-CCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCc-chhhh-
Q 009871          335 AGKKVLELGCGCGGICSMVAA----G-SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDH-IEAIK-  407 (523)
Q Consensus       335 ~~~~VLElG~G~G~l~~~~a~----~-~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~-~~~~~-  407 (523)
                      ++..++|||||+|.=...+..    . ...+++++|+|.++|+.+..++.....    ..+.+.. -|++... +.-+. 
T Consensus        76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~----p~l~v~~-l~gdy~~~l~~l~~  150 (319)
T TIGR03439        76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNF----SHVRCAG-LLGTYDDGLAWLKR  150 (319)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccC----CCeEEEE-EEecHHHHHhhccc
Confidence            566899999999954444332    1 245799999999999999888873222    2344432 2332211 11010 


Q ss_pred             hhcCCCccEEEEc-cccC--CCCChHHHHHHHHH-HhhccCCCCCCCCCcEEEEEEee
Q 009871          408 EENNEGFEVILGT-DVSY--IPEAILPLFATAKE-LTASSNKSLREDQQPAFILCHIF  461 (523)
Q Consensus       408 ~~~~~~fD~Ii~~-d~~y--~~~~~~~l~~~l~~-ll~~~~~~~~~~~~g~~~l~~~~  461 (523)
                      +.......+|+.- ..+-  .+.....+++.+.+ .|         .|++.+++..-.
T Consensus       151 ~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l---------~~~d~lLiG~D~  199 (319)
T TIGR03439       151 PENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATAL---------SPSDSFLIGLDG  199 (319)
T ss_pred             ccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhC---------CCCCEEEEecCC
Confidence            0012345666633 2343  35567788888888 88         668888886544

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=95.74  E-value=0.029  Score=55.01  Aligned_cols=75  Identities=24%  Similarity=0.388  Sum_probs=56.8

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCC-CCEEEEEeCCHHHHHHHHhcc--------ccCCCcEEEEEeeccCCccCCCCCC
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYP-DVFVYACDFSPRAVNLVMTHK--------DFTETRVSTFVCDLISDDLSRQISP  144 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~-~~~v~gvD~S~~~l~~a~~~~--------~~~~~~v~~~~~d~~~~~~~~~~~~  144 (523)
                      +...+||-+|-|.|-.+..+.+. | --+|+-||++|+|++.++++.        ....++++.+..|+.+.  - .-..
T Consensus       288 ~~a~~vLvlGGGDGLAlRellky-P~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~w--l-r~a~  363 (508)
T COG4262         288 RGARSVLVLGGGDGLALRELLKY-PQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQW--L-RTAA  363 (508)
T ss_pred             cccceEEEEcCCchHHHHHHHhC-CCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHH--H-Hhhc
Confidence            45678999999999999888755 5 357999999999999999532        11247889998888642  1 1124


Q ss_pred             CceeEEEE
Q 009871          145 SSIDIVTM  152 (523)
Q Consensus       145 ~~fD~V~~  152 (523)
                      +.||+|+.
T Consensus       364 ~~fD~vIV  371 (508)
T COG4262         364 DMFDVVIV  371 (508)
T ss_pred             ccccEEEE
Confidence            58999998

>PRK10742 putative methyltransferase; Provisional

Probab=95.71  E-value=0.028  Score=53.04  Aligned_cols=74  Identities=19%  Similarity=0.257  Sum_probs=56.1

Q ss_pred             CCCC--eEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhcccc-------CC---CcEEEEEeeccCCccCCC
Q 009871           74 AGRK--DVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDF-------TE---TRVSTFVCDLISDDLSRQ  141 (523)
Q Consensus        74 ~~~~--~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~-------~~---~~v~~~~~d~~~~~~~~~  141 (523)
                      .++.  +|||+=+|.|..++.++.+  ++.|+++|-++.+....+.....       ..   .+++.+++|.... +. .
T Consensus        85 k~g~~p~VLD~TAGlG~Da~~las~--G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~-L~-~  160 (250)
T PRK10742         85 KGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTA-LT-D  160 (250)
T ss_pred             CCCCCCEEEECCCCccHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHH-Hh-h
Confidence            3444  8999999999999999988  77799999999998888775432       11   4678888887643 11 1


Q ss_pred             CCCCceeEEEE
Q 009871          142 ISPSSIDIVTM  152 (523)
Q Consensus       142 ~~~~~fD~V~~  152 (523)
                      . ..+||+|++
T Consensus       161 ~-~~~fDVVYl  170 (250)
T PRK10742        161 I-TPRPQVVYL  170 (250)
T ss_pred             C-CCCCcEEEE
Confidence            2 337999999

>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=95.46  E-value=0.044  Score=50.43  Aligned_cols=99  Identities=20%  Similarity=0.190  Sum_probs=58.7

Q ss_pred             HHHHHhcC-CCCC-CCCeEEEECCCccHHHHHHHh-cCCCEEEEEcCChHHHHHHHHHHHhc-CCCCCCCceEEEeeecC
Q 009871          323 MAAVLARN-PTIV-AGKKVLELGCGCGGICSMVAA-GSADLVVATDGDSIALDLLAQNVTAN-LKPPFLAKLITKRLEWG  398 (523)
Q Consensus       323 la~~l~~~-~~~~-~~~~VLElG~G~G~l~~~~a~-~~~~~V~~~D~~~~~l~~~~~n~~~n-~~~~~~~~v~~~~ldw~  398 (523)
                      |++.|..- .... ++.++||+|.|.-.+=-++-. ..+-+.+++|+|+.+++.|+.++..| ++.   ..++.+.-  .
T Consensus        64 laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~---~~I~lr~q--k  138 (292)
T COG3129          64 LADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLE---RAIRLRRQ--K  138 (292)
T ss_pred             HHHHHHhcCCCCCcCceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcchh---hheeEEec--c
Confidence            56666543 3332 455889998886532222222 24558999999999999999999999 443   22332211  0


Q ss_pred             CCCcchhhhhhcCCCccEEEEccccCCC
Q 009871          399 NRDHIEAIKEENNEGFEVILGTDVSYIP  426 (523)
Q Consensus       399 ~~~~~~~~~~~~~~~fD~Ii~~d~~y~~  426 (523)
                      +.+.+-+-..-..+.||..+|+..+|..
T Consensus       139 ~~~~if~giig~nE~yd~tlCNPPFh~s  166 (292)
T COG3129         139 DSDAIFNGIIGKNERYDATLCNPPFHDS  166 (292)
T ss_pred             CccccccccccccceeeeEecCCCcchh
Confidence            1111100000124689999999888863

>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised

Probab=95.43  E-value=0.069  Score=50.03  Aligned_cols=118  Identities=14%  Similarity=0.214  Sum_probs=61.9

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEEE-
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM-  152 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~-  152 (523)
                      ..+++||=+|=+--. ++.++-.++..+|+-+|+++.+++..++.+...+.+++.++.|+.+. +|.. -.++||++++ 
T Consensus        43 L~gk~il~lGDDDLt-SlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~-LP~~-~~~~fD~f~TD  119 (243)
T PF01861_consen   43 LEGKRILFLGDDDLT-SLALALTGLPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRDP-LPEE-LRGKFDVFFTD  119 (243)
T ss_dssp             STT-EEEEES-TT-H-HHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS----TT-TSS-BSEEEE-
T ss_pred             ccCCEEEEEcCCcHH-HHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEeccccc-CCHH-HhcCCCEEEeC
Confidence            468899999844332 33444445567899999999999999887766666699999999862 3321 2478999999 


Q ss_pred             --------ccccccceeeecceEEecCCeEEEe-e-----CHH---HHHHHHHhCCCcEEEEEe
Q 009871          153 --------ERLTGKDQKISENFYVRGDGTRAFY-F-----SND---FLTSLFKENGFDVEELGL  199 (523)
Q Consensus       153 --------~~~~~~~~~~~~~~~~~~~g~~~~~-~-----~~~---~l~~ll~~~Gf~~~~~~~  199 (523)
                              .-|+..+-.     .+++.|...|+ +     +.+   ++++.+.+.||.+..+..
T Consensus       120 PPyT~~G~~LFlsRgi~-----~Lk~~g~~gy~~~~~~~~s~~~~~~~Q~~l~~~gl~i~dii~  178 (243)
T PF01861_consen  120 PPYTPEGLKLFLSRGIE-----ALKGEGCAGYFGFTHKEASPDKWLEVQRFLLEMGLVITDIIP  178 (243)
T ss_dssp             --SSHHHHHHHHHHHHH-----TB-STT-EEEEEE-TTT--HHHHHHHHHHHHTS--EEEEEEE
T ss_pred             CCCCHHHHHHHHHHHHH-----HhCCCCceEEEEEecCcCcHHHHHHHHHHHHHCCcCHHHHHh
Confidence                    112111111     23334422221 1     232   578888899998866643

All the members are 350-400 amino acids long.; PDB: 2QM3_A.

>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]

Probab=95.37  E-value=0.04  Score=54.26  Aligned_cols=65  Identities=22%  Similarity=0.297  Sum_probs=50.1

Q ss_pred             CCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871           76 RKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM  152 (523)
Q Consensus        76 ~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~  152 (523)
                      -...+|+|.|.|+.+..++..+|.  |-|+++....+..++....   +.|..+-+|+.+. .    |.  -|+|++
T Consensus       178 v~~avDvGgGiG~v~k~ll~~fp~--ik~infdlp~v~~~a~~~~---~gV~~v~gdmfq~-~----P~--~daI~m  242 (342)
T KOG3178|consen  178 VNVAVDVGGGIGRVLKNLLSKYPH--IKGINFDLPFVLAAAPYLA---PGVEHVAGDMFQD-T----PK--GDAIWM  242 (342)
T ss_pred             CceEEEcCCcHhHHHHHHHHhCCC--CceeecCHHHHHhhhhhhc---CCcceeccccccc-C----CC--cCeEEE
Confidence            478999999999999999999988  8888888777766665442   3378888888764 2    22  368888

>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]

Probab=95.33  E-value=0.11  Score=51.34  Aligned_cols=96  Identities=9%  Similarity=-0.024  Sum_probs=68.0

Q ss_pred             CeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCccE
Q 009871          337 KKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEV  416 (523)
Q Consensus       337 ~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~fD~  416 (523)
                      ...+|+|.|+|.+...+.... .+|-+++.+..-+-.+..+.. -++    ..+.   .|--+        +.  ..-|+
T Consensus       179 ~~avDvGgGiG~v~k~ll~~f-p~ik~infdlp~v~~~a~~~~-~gV----~~v~---gdmfq--------~~--P~~da  239 (342)
T KOG3178|consen  179 NVAVDVGGGIGRVLKNLLSKY-PHIKGINFDLPFVLAAAPYLA-PGV----EHVA---GDMFQ--------DT--PKGDA  239 (342)
T ss_pred             ceEEEcCCcHhHHHHHHHHhC-CCCceeecCHHHHHhhhhhhc-CCc----ceec---ccccc--------cC--CCcCe
Confidence            688999999999998888854 458888887766666655553 222    1121   11111        11  25679


Q ss_pred             EEEccccCCC--CChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEe
Q 009871          417 ILGTDVSYIP--EAILPLFATAKELTASSNKSLREDQQPAFILCHI  460 (523)
Q Consensus       417 Ii~~d~~y~~--~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~  460 (523)
                      |+..+|+++.  ++...+++.+++.|         +|+|.+++...
T Consensus       240 I~mkWiLhdwtDedcvkiLknC~~sL---------~~~GkIiv~E~  276 (342)
T KOG3178|consen  240 IWMKWILHDWTDEDCVKILKNCKKSL---------PPGGKIIVVEN  276 (342)
T ss_pred             EEEEeecccCChHHHHHHHHHHHHhC---------CCCCEEEEEec
Confidence            9999999884  57888999999999         67999888765

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	523
3bzb_A	281	Crystal Structure Of Uncharacterized Protein Cmq451		3e-04

>pdb|3BZB|A Chain A, Crystal Structure Of Uncharacterized Protein Cmq451c From The Primitive Red Alga Cyanidioschyzon Merolae Length = 281

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 62/134 (46%), Gaps = 10/134 (7%)
Query: 316 LWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATD-GDSIALDLL 374
           +W  A  +A  L   P ++AGK V ELG G G +  +     AD VVATD  D   L+ L
Sbjct: 60  VWSGARALADTLCWQPELIAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSL 119
Query: 375 AQNV---TANLKPPFLAKLITKRL---EWGNRDHIEAIKEENN-EGFEVILGTDVSYIPE 427
             N+   TAN       K  + ++    WG  D  ++++     + F+V+L  D+    +
Sbjct: 120 ESNIREHTANSCSSETVKRASPKVVPYRWG--DSPDSLQRCTGLQRFQVVLLADLLSFHQ 177
Query: 428 AILPLFATAKELTA 441
           A   L  + K L A
Sbjct: 178 AHDALLRSVKXLLA 191

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	523
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	2e-24
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	4e-15
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	4e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-08
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	2e-07
2p7i_A	250	Hypothetical protein; putative methyltransferase,	1e-06
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	4e-06
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	4e-06
3cc8_A	230	Putative methyltransferase; structural genomics, j	4e-06
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	5e-06
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	6e-06
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	6e-06
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	1e-05
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	1e-05
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	2e-05
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	3e-05
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	3e-05
3lpm_A	259	Putative methyltransferase; structural genomics, p	3e-05
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	4e-05
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	5e-05
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	8e-05
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	1e-04
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	1e-04
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	2e-04
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	2e-04
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	2e-04
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	2e-04
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	2e-04
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	3e-04
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	3e-04
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	3e-04
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	3e-04
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	4e-04
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	4e-04
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	4e-04
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	4e-04
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	4e-04
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	5e-04
3ll7_A	410	Putative methyltransferase; methytransferase, stru	7e-04
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	7e-04
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	8e-04
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	9e-04

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} Length = 281

 Score =  102 bits (254), Expect = 2e-24
 Identities = 41/188 (21%), Positives = 65/188 (34%), Gaps = 8/188 (4%)

Query: 312 TGLMLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATD-GDSIA 370
               +W  A  +A  L   P ++AGK V ELG G G +  +     AD VVATD  D   
Sbjct: 56  WTSHVWSGARALADTLCWQPELIAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEI 115

Query: 371 LDLLAQNVTANLKPPFLAKLIT------KRLEWGNRDHIEAIKEENNEGFEVILGTDVSY 424
           L+ L  N+  +      ++ +           WG+       +    + F+V+L  D+  
Sbjct: 116 LNSLESNIREHTANSCSSETVKRASPKVVPYRWGD-SPDSLQRCTGLQRFQVVLLADLLS 174

Query: 425 IPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLVDKW 484
             +A   L  + K L A             F          + +        G  + + W
Sbjct: 175 FHQAHDALLRSVKMLLALPANDPTAVALVTFTHHRPHLAERDLAFFRLVNADGALIAEPW 234

Query: 485 PSKNSASP 492
            S     P
Sbjct: 235 LSPLQMDP 242

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... Length = 289

 Score = 74.8 bits (183), Expect = 4e-15
 Identities = 30/252 (11%), Positives = 62/252 (24%), Gaps = 67/252 (26%)

Query: 12  GKEEAPKLQIYPTPNTGVSPFWRDKYER-EAKKYWDLFYKRHQDRFFKDRHYLD---KEW 67
           G + +P     P    G +      Y+R E + Y    Y   +              +  
Sbjct: 3   GADRSPNAGAAPDSAPGQAAV-ASAYQRFEPRAYLRNNYAPPRGDLCNPNGVGPWKLRCL 61

Query: 68  GRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVF-VYACDFSPRAVNLVMTHKD-----F 121
            + F+         +  G+G T++ L++A      +   DF       +          F
Sbjct: 62  AQTFATGEVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAF 121

Query: 122 TETRVSTFVCDLISDDL----------------------------SRQISPSSIDIVTME 153
             +  S   C +                                 +   +P   D +   
Sbjct: 122 NWSMYSQHACLIEGKGECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSA 181

Query: 154 ---RLTGKDQK------------------------ISENFYVRGDGT-RAFYFSNDFLTS 185
                   D                          + E++Y+ G+        S + +  
Sbjct: 182 FCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEARLTVVPVSEEEVRE 241

Query: 186 LFKENGFDVEEL 197
               +G+ V +L
Sbjct: 242 ALVRSGYKVRDL 253

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 Length = 263

 Score = 59.7 bits (144), Expect = 4e-10
 Identities = 32/235 (13%), Positives = 60/235 (25%), Gaps = 68/235 (28%)

Query: 34  RDKYERE--AKKYWDLFYKRHQDRFFKDR--HYLDKEWGRYFSGAGRKDVLEVGCGAGNT 89
            D+Y++    + Y   +Y        +     +  +   + F   G +    +  G+G T
Sbjct: 8   GDEYQKHFLPRDYLATYYSFDGSPSPEAEMLKFNLECLHKTFGPGGLQGDTLIDIGSGPT 67

Query: 90  IFPLIAAYPDVF--VYACDFSPRAVNLVMTHKD-----FTETRVSTFV------------ 130
           I+ ++AA  D F  +   DF+ R    +          +  T    F             
Sbjct: 68  IYQVLAAC-DSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEE 126

Query: 131 --------------CDLISDDLSRQISPSSIDIV----TMERLTGKDQK----------- 161
                         CD+   +          D V     ME                   
Sbjct: 127 KEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECAC-CSLDAYRAALCNLAS 185

Query: 162 -------------ISENFYVRGDGT-RAFYFSNDFLTSLFKENGFDVEELGLCCK 202
                        +    Y+ G             +     + GFD+E+L    +
Sbjct: 186 LLKPGGHLVTTVTLRLPSYMVGKREFSCVALEKGEVEQAVLDAGFDIEQLLHSPQ 240

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.0 bits (134), Expect = 2e-08
 Identities = 74/506 (14%), Positives = 148/506 (29%), Gaps = 158/506 (31%)

Query: 61  HYLDKEWG--RYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDF-----SPRAV- 112
           H++D E G  +Y      KD+L V              + D FV   D       P+++ 
Sbjct: 5   HHMDFETGEHQY----QYKDILSV--------------FEDAFVDNFDCKDVQDMPKSIL 46

Query: 113 ------NLVMTHKDFTETR-------------VSTFVCDLISDD---LSRQISPSSID-- 148
                 +++M+    + T              V  FV +++  +   L   I        
Sbjct: 47  SKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPS 106

Query: 149 ------IVTMERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGFDVEELGLCCK 202
                 I   +RL   +Q  ++    R             L  L       ++ +    K
Sbjct: 107 MMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKL---RQALLELRPAKNVLIDGVLGSGK 163

Query: 203 QV------ENRARELVMNRR--WVQAVFCSSGGATSSSEEASVRVDIFNQAIIEPDVAAN 254
                    +   +  M+ +  W+      +    +S E            ++E      
Sbjct: 164 TWVALDVCLSYKVQCKMDFKIFWL------NLKNCNSPET-----------VLEMLQKLL 206

Query: 255 TLKEPMNDSEVDMSEGVAFEMFGLSSFEDNEMIEVNLRDRSFKIEVLSKEYQHTCRSTGL 314
              +P   S  D S  +   +           I+  LR R  K    SK Y++      L
Sbjct: 207 YQIDPNWTSRSDHSSNIKLRI---------HSIQAELR-RLLK----SKPYEN-----CL 247

Query: 315 MLWESAHLMAAVLA--RNPTIVAGKKVLELGC------GCGGICSMVAAGSADLVVA--- 363
           +          VL   +N           L C          +   ++A +   +     
Sbjct: 248 L----------VLLNVQNAKAW---NAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHH 294

Query: 364 ----TDGDSIALDLLAQNVTANLKP-----------PFLAKLITKRLEWGNRDHIEAIKE 408
               T  +     LL + +  + +P           P    +I + +        +  K 
Sbjct: 295 SMTLTPDEV--KSLLLKYL--DCRPQDLPREVLTTNPRRLSIIAESIR-DGLATWDNWKH 349

Query: 409 ENNEGFEVILGTDVSYI-PEAILPLFATAKELTASSNKSLREDQQ-PAFILCHIFRQVDE 466
            N +    I+ + ++ + P     +F     L+             P  +L  I+  V +
Sbjct: 350 VNCDKLTTIIESSLNVLEPAEYRKMF---DRLSV-----FPPSAHIPTILLSLIWFDVIK 401

Query: 467 PSMLSAATQC-GFRLVDKWPSKNSAS 491
             ++    +   + LV+K P +++ S
Sbjct: 402 SDVMVVVNKLHKYSLVEKQPKESTIS 427

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} Length = 240

 Score = 51.5 bits (123), Expect = 2e-07
 Identities = 30/186 (16%), Positives = 55/186 (29%), Gaps = 45/186 (24%)

Query: 44  YWDLFYKRHQDRFFKDRHYLDKEWGRYFSG-AGRKDVLEVGCGAGNTIFPLIAAYPDVFV 102
           +   +Y   +++F   R  +     RY     G + VL++GCG G   F  +     +  
Sbjct: 9   HTSDYYFLFEEKFRGSRELVKARLRRYIPYFKGCRRVLDIGCGRGE--FLELCKEEGIES 66

Query: 103 YACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM----ERLTGK 158
              D +   +        F E + +    D I       +    +D V +    E L  +
Sbjct: 67  IGVDINEDMIK-------FCEGKFNVVKSDAIEYLK--SLPDKYLDGVMISHFVEHLDPE 117

Query: 159 D-----QKISE----------------------NFYVRGDGTRAFYFSNDFLTSLFKENG 191
                                            NFY+  D T       + L  + +  G
Sbjct: 118 RLFELLSLCYSKMKYSSYIVIESPNPTSLYSLINFYI--DPTHKKPVHPETLKFILEYLG 175

Query: 192 FDVEEL 197
           F   ++
Sbjct: 176 FRDVKI 181

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A Length = 250

 Score = 49.1 bits (117), Expect = 1e-06
 Identities = 21/207 (10%), Positives = 46/207 (22%), Gaps = 58/207 (28%)

Query: 37  YEREAKKYWDLFYKR---HQDRFFKDRHYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPL 93
             R   +           +   F     ++ + +  +F      ++LE+G   G+    L
Sbjct: 4   ISRNYDQEIKDTAGHKYAYNFDFDVMHPFMVRAFTPFFRP---GNLLELGSFKGDFTSRL 60

Query: 94  IAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM- 152
              + D  +   + S  A++     +   +  +       I         P   D + + 
Sbjct: 61  QEHFND--ITCVEASEEAISHA---QGRLKDGI-----TYIHSRFEDAQLPRRYDNIVLT 110

Query: 153 -------------------------------------ERLTGKDQKISENFYVRGDGTRA 175
                                                 R       I  +     +   A
Sbjct: 111 HVLEHIDDPVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFA 170

Query: 176 ----FYFSNDFLTSLFKENGFDVEELG 198
                 ++ D L       G  V    
Sbjct: 171 HGHRCTYALDTLERDASRAGLQVTYRS 197

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} Length = 245

 Score = 47.4 bits (112), Expect = 4e-06
 Identities = 25/142 (17%), Positives = 48/142 (33%), Gaps = 14/142 (9%)

Query: 10  GIGKEEAPKLQIYPTPNTGVSPFWRDKYEREAKKYWDLFYKRHQDRFFKDRHYLDKEWGR 69
           G+ K  A K      P+  V+  W   + +       + +  + +R       L + +  
Sbjct: 1   GMEKLSAIK-----KPDINVADAWEQYWNKTLVNSTPVLWDANVER--AVVVDLPR-FEL 52

Query: 70  YFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTF 129
            F+      +++  CG G     L   +P V     D S  A+ +       T   +S  
Sbjct: 53  LFNPELP--LIDFACGNGTQTKFLSQFFPRVI--GLDVSKSALEIAAKE--NTAANISYR 106

Query: 130 VCDLISDDLSRQISPSSIDIVT 151
           + D +  + + QI     D   
Sbjct: 107 LLDGLVPEQAAQIHSEIGDANI 128

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 252

 Score = 47.1 bits (112), Expect = 4e-06
 Identities = 21/116 (18%), Positives = 42/116 (36%), Gaps = 9/116 (7%)

Query: 37  YEREAKKYWDLFYKRHQDRFFKDRHYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAA 96
           Y   A+ Y+D  Y+R  +R   +  ++++ +        R+ VL++ CG G     L   
Sbjct: 5   YTLLAE-YYDTIYRRRIERVKAEIDFVEEIFKEDAKREVRR-VLDLACGTGIPTLELAER 62

Query: 97  YPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM 152
             +  V   D     + +          ++     D++      +      D VTM
Sbjct: 63  GYE--VVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNE-----FDAVTM 111

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} Length = 230

 Score = 47.0 bits (112), Expect = 4e-06
 Identities = 22/197 (11%), Positives = 50/197 (25%), Gaps = 58/197 (29%)

Query: 42  KKYWDLFYKRHQDRFFKDRHYLD---KEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYP 98
               +  Y+       K  HY +       ++     ++ VL++GC +G     +     
Sbjct: 3   NSPKNSLYE------EKSGHYYNAVNPNLLKHIKKEWKE-VLDIGCSSGALGAAIKENGT 55

Query: 99  DVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM------ 152
              V   +  P A        D         + D+ + D+         D V        
Sbjct: 56  R--VSGIEAFPEAAEQAKEKLDHVV------LGDIETMDM--PYEEEQFDCVIFGDVLEH 105

Query: 153 ---------------------------ERLTGKDQKISENFYV-----RGDGTRAFYFSN 180
                                               +    +        D T   +F+ 
Sbjct: 106 LFDPWAVIEKVKPYIKQNGVILASIPNVSHISVLAPLLAGNWTYTEYGLLDKTHIRFFTF 165

Query: 181 DFLTSLFKENGFDVEEL 197
           + +  +F + G+ + ++
Sbjct: 166 NEMLRMFLKAGYSISKV 182

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} Length = 215

 Score = 46.6 bits (110), Expect = 5e-06
 Identities = 23/112 (20%), Positives = 39/112 (34%), Gaps = 10/112 (8%)

Query: 42  KKYWDLFYKRHQDRFFKDRHYLDKEWGRYFSGAGRKD--VLEVGCGAGNTIFPLIAA-YP 98
            +YWD  Y+   D    D       +        R +  +L +GCG     + L    +P
Sbjct: 7   VEYWDQRYQGAADSAPYDWFGDFSSFRALLEPELRPEDRILVLGCGNSALSYELFLGGFP 66

Query: 99  DVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIV 150
           +  V + D+S   V   M        ++     D+   D       +S D+V
Sbjct: 67  N--VTSVDYSSVVVAA-MQACYAHVPQLRWETMDVRKLDF----PSASFDVV 111

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 Length = 194

 Score = 46.1 bits (110), Expect = 6e-06
 Identities = 22/110 (20%), Positives = 42/110 (38%), Gaps = 11/110 (10%)

Query: 282 EDNEMIEVNLRDRSFKIEVLSKEYQHTCRSTGLMLWESAHLMAAVLARNPTIVAGKKVLE 341
            D +++E  LR +  K +  S          G+  +        +L  N  +     +L+
Sbjct: 9   SDVKIVEDILRGKKLKFKTDS----------GVFSYGKVDKGTKILVENVVVDKDDDILD 58

Query: 342 LGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLI 391
           LGCG G I  +  A         D +  A+ L  +N+  N    +  +++
Sbjct: 59  LGCGYGVI-GIALADEVKSTTMADINRRAIKLAKENIKLNNLDNYDIRVV 107

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} Length = 292

 Score = 47.3 bits (111), Expect = 6e-06
 Identities = 18/89 (20%), Positives = 35/89 (39%), Gaps = 11/89 (12%)

Query: 30  SPFWRDKYEREAKKY----WDLFYKRHQDRFFKDR-HYLDKEWGRYFSGAGRKDVLEVGC 84
           SP     ++++ +K+    +  +Y          R   L  EW   F G   +DVL++GC
Sbjct: 2   SPLPAAGFKKQQRKFQYGNYCKYYGYRNPSCEDGRLRVLKPEW---FRG---RDVLDLGC 55

Query: 85  GAGNTIFPLIAAYPDVFVYACDFSPRAVN 113
             G+    +   +    +   D   R ++
Sbjct: 56  NVGHLTLSIACKWGPSRMVGLDIDSRLIH 84

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} Length = 260

 Score = 46.0 bits (109), Expect = 1e-05
 Identities = 16/98 (16%), Positives = 31/98 (31%), Gaps = 1/98 (1%)

Query: 324 AAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADL-VVATDGDSIALDLLAQNVTANL 382
           A +LA         ++ +LG G G     VAA      V   +      +   +++    
Sbjct: 25  AMLLASLVADDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPD 84

Query: 383 KPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGT 420
              F A++     +   R          +E F  ++  
Sbjct: 85  NAAFSARIEVLEADVTLRAKARVEAGLPDEHFHHVIMN 122

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242

 Score = 45.6 bits (108), Expect = 1e-05
 Identities = 17/78 (21%), Positives = 28/78 (35%), Gaps = 9/78 (11%)

Query: 37  YEREAKKYWDL---FYKRHQDRFFKDRHYLDKEWGRYFSGAGRKD--VLEVGCGAGNTIF 91
           +   A+K WD    F+ ++    +            +F    +K+  VL+VGCG G   +
Sbjct: 12  WHESAEKKWDSSAEFWNQNSQEMW--DSGSRSTIIPFFEQYVKKEAEVLDVGCGDGYGTY 69

Query: 92  PLIAAYPDVFVYACDFSP 109
            L            D S 
Sbjct: 70  KLSRTGYK--AVGVDISE 85

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203

 Score = 44.8 bits (106), Expect = 2e-05
 Identities = 12/81 (14%), Positives = 21/81 (25%), Gaps = 8/81 (9%)

Query: 34  RDKYEREAKKYWDLFYKRHQDRFFKDRHYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPL 93
              Y         L                D+     ++      +L+VG G G     L
Sbjct: 6   SKAYSSPTFDAEALL------GTVISAEDPDRVLIEPWATGVDGVILDVGSGTGRWTGHL 59

Query: 94  IAAYPDVFVYACDFSPRAVNL 114
            +    +     + + R V L
Sbjct: 60  ASLGHQIE--GLEPATRLVEL 78

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} Length = 230

 Score = 44.5 bits (105), Expect = 3e-05
 Identities = 20/194 (10%), Positives = 48/194 (24%), Gaps = 40/194 (20%)

Query: 333 IVAGKKVLELGCGCGGI-CSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLI 391
           +  G ++L++G     +   ++  G  D  +A +  +       +NV+ +          
Sbjct: 19  VPKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEH---------- 68

Query: 392 TKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQ 451
                 G    I+        G       D                ++  +    L+  +
Sbjct: 69  ------GLTSKIDVRL---ANGLSAFEEADNIDTITICGMGGRLIADILNNDIDKLQHVK 119

Query: 452 QPAFILCHIFRQVDEPSMLSAATQCGFRLVDKW---------------PSKNSASPSESI 496
               +L        E  +        F +V +                    + +  E  
Sbjct: 120 T--LVLQ---PNNREDDLRKWLAANDFEIVAEDILTENDKRYEILVVKHGHMNLTAKELR 174

Query: 497 ISSWFSENGHEVYL 510
              +   N   V+ 
Sbjct: 175 FGPFLLSNNTTVFK 188

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} Length = 343

 Score = 45.5 bits (108), Expect = 3e-05
 Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 1/59 (1%)

Query: 324 AAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADL-VVATDGDSIALDLLAQNVTAN 381
           + +L    T     KVL++GCG G +    A  S  + +   D  + A++     + AN
Sbjct: 185 SQLLLSTLTPHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAAN 243

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} Length = 259

 Score = 44.8 bits (106), Expect = 3e-05
 Identities = 21/186 (11%), Positives = 57/186 (30%), Gaps = 31/186 (16%)

Query: 322 LMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTAN 381
           L+A   +  P      K+++L  G G I  +++  +   +V  +      D+  ++V  N
Sbjct: 39  LLAK-FSYLPI--RKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYN 95

Query: 382 LKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGT-----DVSYIPEAILPLFATA 436
                    +  ++E    D  +       E  +++              +     F  A
Sbjct: 96  --------QLEDQIEIIEYDLKKITDLIPKERADIVTCNPPYFATPDTSLKNTNEHFRIA 147

Query: 437 --------KELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGF---RLVDKWP 485
                   ++    +   L++         H   ++ +  ++    +      R+    P
Sbjct: 148 RHEVMCTLEDTIRVAASLLKQ--GGKANFVHRPERLLD--IIDIMRKYRLEPKRIQFVHP 203

Query: 486 SKNSAS 491
             +  +
Sbjct: 204 RSDREA 209

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220

 Score = 44.1 bits (104), Expect = 4e-05
 Identities = 32/196 (16%), Positives = 63/196 (32%), Gaps = 37/196 (18%)

Query: 33  WRDKYEREAKKYWDLFYKRHQDRFFKDRHYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFP 92
           +   ++  A  Y D F +    ++ +   + +       + +    VLE G G GN    
Sbjct: 5   FNGLFDEWAHTY-DSFVQGEDIQYKEVFAHYEDILEDVVNKSFGN-VLEFGVGTGNLTNK 62

Query: 93  LIAAYPDVFVYACDFSPR---------AVNLVMTHKDFTETR--------VSTFVCDLIS 135
           L+ A     VY  + S                +T  DF            VST+    ++
Sbjct: 63  LLLAGRT--VYGIEPSREMRMIAKEKLPKEFSITEGDFLSFEVPTSIDTIVSTYAFHHLT 120

Query: 136 DD--------LSRQISP------SSIDIVTMERLTGKDQKISENFY--VRGDGTRAFYFS 179
           DD         S+ ++       +       +      +   +  +  +  D    +Y  
Sbjct: 121 DDEKNVAIAKYSQLLNKGGKIVFADTIFADQDAYDKTVEAAKQRGFHQLANDLQTEYYTR 180

Query: 180 NDFLTSLFKENGFDVE 195
              + ++F+ NGF V 
Sbjct: 181 IPVMQTIFENNGFHVT 196

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} Length = 375

 Score = 44.5 bits (105), Expect = 5e-05
 Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 1/60 (1%)

Query: 323 MAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADL-VVATDGDSIALDLLAQNVTAN 381
            A    ++       ++++LGCG G I   +   +    VV  D   +A+     NV  N
Sbjct: 210 GARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETN 269

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* Length = 263

 Score = 43.3 bits (102), Expect = 8e-05
 Identities = 15/73 (20%), Positives = 29/73 (39%), Gaps = 4/73 (5%)

Query: 37  YEREAKKYWDLFYKRHQDRFFKDRHYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAA 96
           Y  E  + +DL ++     + ++   L     R+   A    +L+V CG G  +  L  +
Sbjct: 14  YSGEIAELYDLVHQGKGKDYHREAADLAALVRRHSPKAAS--LLDVACGTGMHLRHLADS 71

Query: 97  YPDVFVYACDFSP 109
           +    V   + S 
Sbjct: 72  FGT--VEGLELSA 82

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 Length = 200

 Score = 42.3 bits (99), Expect = 1e-04
 Identities = 13/64 (20%), Positives = 26/64 (40%), Gaps = 2/64 (3%)

Query: 318 ESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQN 377
            +A+ +  +       + G+ V++ G G G +        A+ V A D D  A++   +N
Sbjct: 36  TAAYFLIEIYNDG--NIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRN 93

Query: 378 VTAN 381
               
Sbjct: 94  CGGV 97

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} Length = 243

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 23/107 (21%), Positives = 34/107 (31%), Gaps = 16/107 (14%)

Query: 37  YEREAKKYWDLFYKRHQDRFFKDRHYLDKEWGRYFSGAGRKD--VLEVGCGAGNTIFPLI 94
           YE+ A  Y         D   +D  Y   EW  +          + ++GCG G     L 
Sbjct: 4   YEQFAYVY---------DELMQDVPY--PEWVAWVLEQVEPGKRIADIGCGTGTATLLLA 52

Query: 95  AAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQ 141
             Y    V   D S   + +       T   V  +V D+   +L   
Sbjct: 53  DHYE---VTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRELELPEP 96

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219

 Score = 42.1 bits (99), Expect = 2e-04
 Identities = 15/82 (18%), Positives = 28/82 (34%), Gaps = 5/82 (6%)

Query: 34  RDKYEREAKKYWDLFYKRHQDRFFKDRHYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPL 93
           + K++++  K  D          F   + +  E      G      +++G G G      
Sbjct: 6   KKKFDKKGAKNMDEIS----KTLFAPIYPIIAENIINRFGITAGTCIDIGSGPGALSI-A 60

Query: 94  IAAYPDVFVYACDFSPRAVNLV 115
           +A   D  + A DFS     + 
Sbjct: 61  LAKQSDFSIRALDFSKHMNEIA 82

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 Length = 246

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 18/118 (15%), Positives = 43/118 (36%), Gaps = 11/118 (9%)

Query: 35  DKYEREAKKYWDLFYKRHQDRFFKDRHYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLI 94
           + Y + A   +D   +   D + K   ++ ++             L++ CG GN    L 
Sbjct: 1   NCYNKFAH-IYDKLIRADVD-YKKWSDFIIEKCVENNLVFDD--YLDLACGTGNLTENLC 56

Query: 95  AAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM 152
             + +   +A D S   ++           +      D+ + +++R+      D++T 
Sbjct: 57  PKFKN--TWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRK-----FDLITC 107

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} Length = 239

 Score = 41.7 bits (98), Expect = 2e-04
 Identities = 14/75 (18%), Positives = 24/75 (32%), Gaps = 4/75 (5%)

Query: 35  DKYEREAKKYWDLFYKRHQDRFFKDRHYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLI 94
             YE +    +DLFY      +  +   +          A    +L+V CG G  +    
Sbjct: 2   HMYEVDHADVYDLFYLGRGKDYAAEASDIADLVRSRTPEASS--LLDVACGTGTHLEHFT 59

Query: 95  AAYPDVFVYACDFSP 109
             + D      + S 
Sbjct: 60  KEFGD--TAGLELSE 72

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* Length = 293

 Score = 42.3 bits (99), Expect = 2e-04
 Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 7/78 (8%)

Query: 34  RDKY-EREAKKYWDLFYKRHQDRFFKDRHYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFP 92
            D+Y + EA + W L+    + R  + + +L     ++    G   VL+V CG G     
Sbjct: 19  PDQYADGEAARVWQLYIGDTRSRTAEYKAWLLGLLRQH----GCHRVLDVACGTGVDSIM 74

Query: 93  LIAAYPDVFVYACDFSPR 110
           L+       V + D S +
Sbjct: 75  LVEEGFS--VTSVDASDK 90

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Length = 218

 Score = 41.4 bits (97), Expect = 2e-04
 Identities = 18/81 (22%), Positives = 22/81 (27%), Gaps = 9/81 (11%)

Query: 34  RDKYEREAKKYWDLFYKRHQDRFFKDRHYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPL 93
              Y   A +Y   F                    R  +G  R DVLE+  G G     L
Sbjct: 12  LSYYRARASEYDATFVPYMDS-------AAPAALERLRAGNIRGDVLELASGTGYWTRHL 64

Query: 94  IAAYPDVFVYACDFSPRAVNL 114
                 V   A D S   +  
Sbjct: 65  SGLADRVT--ALDGSAEMIAE 83

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* Length = 225

 Score = 41.4 bits (97), Expect = 3e-04
 Identities = 28/198 (14%), Positives = 52/198 (26%), Gaps = 54/198 (27%)

Query: 336 GKKVLELGCGCGGI-CSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKR 394
           G  +L++G     +   +V  G     +A +          +NV A+             
Sbjct: 16  GAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAH------------- 62

Query: 395 LEWGNRDHIEAIKEENNEGFEVILGTD-VSYI------PEAILPLFATAKELTASSNKSL 447
              G ++ I+        G      TD VS I         I  +               
Sbjct: 63  ---GLKEKIQVRL---ANGLAAFEETDQVSVITIAGMGGRLIARILEEGLG--------- 107

Query: 448 REDQQPAFILCHIFRQVDEPSMLSAATQCGFRLVDKW---------------PSKNSASP 492
           +       IL        E  +       GF++V +                  +   S 
Sbjct: 108 KLANVERLILQ---PNNREDDLRIWLQDHGFQIVAESILEEAGKFYEILVVEAGQMKLSA 164

Query: 493 SESIISSWFSENGHEVYL 510
           S+     + S+    V++
Sbjct: 165 SDVRFGPFLSKEVSPVFV 182

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234

 Score = 41.7 bits (98), Expect = 3e-04
 Identities = 14/77 (18%), Positives = 26/77 (33%), Gaps = 6/77 (7%)

Query: 34  RDKYEREAKKYWDLFYKRHQDRFFKDRHYLDKEWGRYFSGAGRKD-VLEVGCGAGNTIFP 92
           + K++  + KY +      + +F               S       +L++G G G     
Sbjct: 7   KRKFDAVSGKYDE-----QRRKFIPCFDDFYGVSVSIASVDTENPDILDLGAGTGLLSAF 61

Query: 93  LIAAYPDVFVYACDFSP 109
           L+  YP+      D S 
Sbjct: 62  LMEKYPEATFTLVDMSE 78

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} Length = 244

 Score = 41.8 bits (98), Expect = 3e-04
 Identities = 19/151 (12%), Positives = 44/151 (29%), Gaps = 25/151 (16%)

Query: 333 IVAGKKVLELGCGCGGI-CSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLI 391
           I   +++ ++G     + C  V   +A   +A +          + V ++     L + I
Sbjct: 19  ITKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSS----GLTEQI 74

Query: 392 TKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQ 451
             R   G    +  I++++     VI G         I  +               +   
Sbjct: 75  DVRKGNG----LAVIEKKDAIDTIVIAGM----GGTLIRTILEEGAA---------KLAG 117

Query: 452 QPAFILCHIFRQVDEPSMLSAATQCGFRLVD 482
               IL      +    +   + Q  + +  
Sbjct: 118 VTKLILQ---PNIAAWQLREWSEQNNWLITS 145

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* Length = 381

 Score = 41.9 bits (98), Expect = 3e-04
 Identities = 22/96 (22%), Positives = 38/96 (39%), Gaps = 7/96 (7%)

Query: 287 IEVNLRDRSFKIEVLSKEYQHTCRSTGLMLWESAHLMAAVLAR-NPTIVAGKKVLELGCG 345
               +    +    L   +             S  L+ A+  R  P  V G++VL+LG G
Sbjct: 189 FSARILGAEYTFHHLPGVFSAGKVDPA-----SLLLLEALQERLGPEGVRGRQVLDLGAG 243

Query: 346 CGGICSMVAAGSADLVVATDGDSIALDLLAQNVTAN 381
            G +   +A   A+ VV  + D  ++  L + + AN
Sbjct: 244 YGALTLPLARMGAE-VVGVEDDLASVLSLQKGLEAN 278

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* Length = 336

 Score = 41.7 bits (98), Expect = 4e-04
 Identities = 23/151 (15%), Positives = 52/151 (34%), Gaps = 29/151 (19%)

Query: 333 IVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLIT 392
           +     V+++  G G     +A  +A  + A D +  A++LL +N+  N           
Sbjct: 193 VSLNDVVVDMFAGVGPF--SIACKNAKKIYAIDINPHAIELLKKNIKLN----------- 239

Query: 393 KRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQ 452
                     I  I    ++  EV +  +       I+ L   A +    +   + E   
Sbjct: 240 -----KLEHKIIPI---LSDVREVDVKGNR-----VIMNLPKFAHKFIDKALDIVEEG-- 284

Query: 453 PAFILCHIFRQVDEPSMLSAATQCGFRLVDK 483
              I  +   +  + ++     +C   +++K
Sbjct: 285 -GVIHYYTIGKDFDKAIKLFEKKCDCEVLEK 314

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Length = 227

 Score = 40.9 bits (96), Expect = 4e-04
 Identities = 17/79 (21%), Positives = 27/79 (34%), Gaps = 5/79 (6%)

Query: 34  RDKYEREAKKYWDLFYKRHQDRFFKDRHYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPL 93
            D + + A+ + D    RH       R   D+       G   + VL++GCG G  +  L
Sbjct: 14  LDSWHQNAQAWIDAV--RHGAIES-RRQVTDQAILLAILGRQPERVLDLGCGEGWLLRAL 70

Query: 94  IAAYPDVFVYACDFSPRAV 112
                +      D     V
Sbjct: 71  ADRGIEAV--GVDGDRTLV 87

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 Length = 269

 Score = 41.4 bits (97), Expect = 4e-04
 Identities = 11/38 (28%), Positives = 17/38 (44%)

Query: 77  KDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNL 114
             VL++GCG G        A P++  +  D S  A+  
Sbjct: 87  TAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKA 124

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209

 Score = 40.7 bits (95), Expect = 4e-04
 Identities = 24/178 (13%), Positives = 45/178 (25%), Gaps = 39/178 (21%)

Query: 77  KDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCD---- 132
           K VL+ G G       +         Y  + S   +            +++    D    
Sbjct: 25  KTVLDCGAGGDLPPLSI-FVEDGYKTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKL 83

Query: 133 ------------------LISDDLSRQIS-------PSSI----DIVTMERLTGKDQKIS 163
                             +  +D+   I        P  +     + T +    K +KI 
Sbjct: 84  PFKDESMSFVYSYGTIFHMRKNDVKEAIDEIKRVLKPGGLACINFLTTKDERYNKGEKIG 143

Query: 164 ENFYV---RGDGTRAFYFSNDFLTSLFKENGFDVEELGLCCKQVENRARELVMNRRWV 218
           E  ++   RG+     Y S +     FK     V        +  N   ++       
Sbjct: 144 EGEFLQLERGEKVIHSYVSLEEADKYFK--DMKVLFKEDRVVERINDGLKIKQGYVDY 199

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Length = 243

 Score = 40.9 bits (96), Expect = 4e-04
 Identities = 11/32 (34%), Positives = 16/32 (50%)

Query: 334 VAGKKVLELGCGCGGICSMVAAGSADLVVATD 365
           V G ++++LGCG G  C       A  V+  D
Sbjct: 42  VGGLRIVDLGCGFGWFCRWAHEHGASYVLGLD 73

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253

 Score = 41.1 bits (96), Expect = 5e-04
 Identities = 14/39 (35%), Positives = 17/39 (43%)

Query: 327 LARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATD 365
           L +       K VL+LGCG G  C   A   A  V+  D
Sbjct: 36  LKKMLPDFNQKTVLDLGCGFGWHCIYAAEHGAKKVLGID 74

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} Length = 410

 Score = 40.9 bits (95), Expect = 7e-04
 Identities = 15/99 (15%), Positives = 29/99 (29%), Gaps = 10/99 (10%)

Query: 319 SAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNV 378
           S  + ++  +R   I  G KV++L  G G    +     A   +  + +         N+
Sbjct: 79  SGAVTSSYKSRF--IREGTKVVDLTGGLGID-FIALMSKASQGIYIERNDETAVAARHNI 135

Query: 379 TANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVI 417
                         K +     D  E +        + I
Sbjct: 136 PL-------LLNEGKDVNILTGDFKEYLPLIKTFHPDYI 167

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 Length = 219

 Score = 40.2 bits (94), Expect = 7e-04
 Identities = 14/81 (17%), Positives = 27/81 (33%), Gaps = 14/81 (17%)

Query: 34  RDKYEREAKKYWDLFYKRHQDRFFKDRHYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPL 93
              +ER   +Y + ++  H+  +  +   +           GR   +E+G G G    PL
Sbjct: 14  WHIFERFVNEY-ERWFLVHRFAYLSELQAVKC-----LLPEGR--GVEIGVGTGRFAVPL 65

Query: 94  IAAYPDVFVYACDFSPRAVNL 114
                       + S R   +
Sbjct: 66  KI------KIGVEPSERMAEI 80

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Length = 211

 Score = 39.8 bits (93), Expect = 8e-04
 Identities = 22/85 (25%), Positives = 35/85 (41%), Gaps = 6/85 (7%)

Query: 30  SPFWRDKYEREAKKYWDLFYKRHQDRFFKDRHYLDKEWGRYFSGAGRKDVLEVGCGAGNT 89
            P     ++ +  +++      + +R       L K  G   +GA    +LE+GCGAG  
Sbjct: 2   EPDMTQAFDDDTLRFYRGNATAYAERQ-PRSATLTKFLGELPAGA---KILELGCGAGYQ 57

Query: 90  IFPLIAAYPDVFVYACDFSPRAVNL 114
              ++AA  DV   A D SP     
Sbjct: 58  AEAMLAAGFDVD--ATDGSPELAAE 80

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* Length = 225

 Score = 40.2 bits (93), Expect = 9e-04
 Identities = 9/53 (16%), Positives = 16/53 (30%), Gaps = 1/53 (1%)

Query: 66  EWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTH 118
           E         R   +++G G G  I+ L     + F    D     +  +   
Sbjct: 16  ELTEIIGQFDR-VHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKK 67

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	523
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	99.84
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	99.79
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	99.65
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	99.63
3lpm_A	259	Putative methyltransferase; structural genomics, p	99.59
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.59
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	99.58
3lcc_A	235	Putative methyl chloride transferase; halide methy	99.58
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	99.58
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	99.57
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	99.56
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	99.56
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.56
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	99.56
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	99.55
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	99.55
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	99.54
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	99.54
1xxl_A	239	YCGJ protein; structural genomics, protein structu	99.54
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	99.54
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	99.53
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	99.53
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	99.53
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	99.52
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	99.52
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	99.52
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	99.51
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	99.51
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	99.51
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	99.51
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	99.51
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	99.51
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	99.51
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	99.51
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	99.5
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	99.5
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	99.5
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	99.49
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	99.49
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	99.49
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	99.49
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	99.49
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	99.48
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	99.48
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	99.48
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	99.48
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.47
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	99.47
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	99.47
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	99.47
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.47
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	99.47
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	99.47
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	99.47
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	99.47
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	99.47
2p7i_A	250	Hypothetical protein; putative methyltransferase,	99.46
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	99.46
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	99.46
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	99.46
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	99.46
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	99.46
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	99.46
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	99.45
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	99.45
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	99.45
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	99.45
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	99.45
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	99.44
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	99.44
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	99.44
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	99.44
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	99.44
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	99.44
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	99.43
3lcc_A	235	Putative methyl chloride transferase; halide methy	99.43
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	99.43
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	99.43
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	99.43
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	99.42
1xxl_A	239	YCGJ protein; structural genomics, protein structu	99.42
2p7i_A	250	Hypothetical protein; putative methyltransferase,	99.42
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	99.42
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	99.42
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	99.42
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	99.41
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	99.41
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	99.41
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	99.41
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	99.41
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	99.41
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	99.4
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	99.4
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	99.4
3ege_A	261	Putative methyltransferase from antibiotic biosyn	99.4
3i9f_A	170	Putative type 11 methyltransferase; structural gen	99.4
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	99.4
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	99.4
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	99.39
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	99.39
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	99.39
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	99.39
3ocj_A	305	Putative exported protein; structural genomics, PS	99.39
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	99.39
2frn_A	278	Hypothetical protein PH0793; structural genomics,	99.39
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	99.39
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	99.38
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	99.38
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	99.38
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	99.38
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	99.37
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	99.37
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	99.37
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	99.37
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	99.37
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	99.37
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	99.37
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	99.37
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	99.37
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	99.37
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	99.37
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	99.37
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	99.37
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	99.37
3ocj_A	305	Putative exported protein; structural genomics, PS	99.36
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	99.36
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	99.36
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	99.36
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.35
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	99.35
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	99.35
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	99.35
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	99.35
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	99.35
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	99.35
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	99.34
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	99.34
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	99.34
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	99.34
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	99.34
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	99.34
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	99.34
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	99.34
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	99.34
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	99.33
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	99.33
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	99.33
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	99.33
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	99.33
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	99.33
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	99.33
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	99.33
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	99.33
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	99.33
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	99.33
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	99.32
2esr_A	177	Methyltransferase; structural genomics, hypothetic	99.32
3ege_A	261	Putative methyltransferase from antibiotic biosyn	99.32
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	99.32
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	99.32
2b3t_A	276	Protein methyltransferase HEMK; translation termin	99.32
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	99.32
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	99.32
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.32
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	99.31
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	99.31
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	99.31
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	99.31
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	99.31
3cc8_A	230	Putative methyltransferase; structural genomics, j	99.31
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	99.31
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	99.31
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	99.31
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	99.31
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	99.31
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	99.31
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	99.3
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	99.3
3cc8_A	230	Putative methyltransferase; structural genomics, j	99.3
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	99.3
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	99.29
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	99.29
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	99.29
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	99.29
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	99.29
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	99.29
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	99.29
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	99.28
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	99.28
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	99.28
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	99.28
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	99.28
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	99.28
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	99.28
3lpm_A	259	Putative methyltransferase; structural genomics, p	99.28
3k6r_A	278	Putative transferase PH0793; structural genomics,	99.27
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	99.27
3i9f_A	170	Putative type 11 methyltransferase; structural gen	99.27
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	99.27
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	99.27
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	99.27
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	99.27
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	99.27
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	99.27
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	99.26
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	99.26
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	99.26
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	99.26
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	99.26
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	99.26
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	99.25
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	99.25
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	99.25
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	99.25
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	99.25
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	99.25
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	99.25
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	99.25
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	99.25
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	99.25
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	99.25
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	99.24
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	99.24
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	99.23
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	99.23
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	99.23
2b3t_A	276	Protein methyltransferase HEMK; translation termin	99.23
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	99.22
2frn_A	278	Hypothetical protein PH0793; structural genomics,	99.22
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	99.22
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	99.22
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	99.22
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	99.21
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	99.21
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	99.21
1ws6_A	171	Methyltransferase; structural genomics, riken stru	99.21
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	99.21
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	99.21
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	99.21
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	99.21
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	99.21
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	99.21
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	99.2
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	99.2
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	99.2
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	99.2
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	99.2
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	99.19
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.19
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	99.19
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	99.19
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	99.19
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	99.19
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	99.18
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	99.18
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	99.18
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	99.18
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	99.17
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	99.17
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	99.17
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	99.17
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	99.17
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	99.17
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	99.16
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	99.16
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	99.16
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	99.15
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	99.15
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.15
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	99.15
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	99.15
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	99.15
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	99.15
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	99.15
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	99.14
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	99.14
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	99.14
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	99.14
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	99.14
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	99.14
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	99.14
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	99.13
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	99.13
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	99.12
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	99.12
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	99.12
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	99.12
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	99.12
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	99.12
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	99.12
2h00_A	254	Methyltransferase 10 domain containing protein; st	99.11
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	99.11
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	99.11
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	99.11
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	99.11
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	99.11
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	99.1
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	99.1
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	99.1
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	99.1
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	99.1
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	99.09
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	99.09
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	99.09
2qm3_A	373	Predicted methyltransferase; putative methyltransf	99.09
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	99.09
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	99.09
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	99.09
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	99.08
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.08
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	99.08
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	99.08
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	99.08
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	99.08
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	99.08
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	99.08
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	99.08
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	99.08
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	99.07
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	99.07
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	99.07
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	99.07
2b25_A	336	Hypothetical protein; structural genomics, methyl	99.07
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	99.06
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	99.06
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	99.05
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	99.05
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	99.05
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	99.05
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	99.05
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	99.05
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	99.04
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	99.04
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	99.04
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	99.04
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	99.04
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	99.03
2b25_A	336	Hypothetical protein; structural genomics, methyl	99.03
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	99.03
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	99.03
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	99.03
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	99.02
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	99.02
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	99.02
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	99.01
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	99.01
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	99.01
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	99.01
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	99.0
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	99.0
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	99.0
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	99.0
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	99.0
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	98.99
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	98.99
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	98.99
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	98.99
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	98.99
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	98.98
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	98.98
2esr_A	177	Methyltransferase; structural genomics, hypothetic	98.98
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	98.98
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	98.98
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	98.98
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	98.97
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	98.97
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	98.97
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	98.97
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	98.97
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	98.96
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	98.96
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	98.96
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	98.96
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	98.96
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	98.96
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	98.95
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	98.95
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	98.95
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	98.95
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	98.95
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	98.95
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	98.95
3k6r_A	278	Putative transferase PH0793; structural genomics,	98.95
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	98.94
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	98.94
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	98.94
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	98.94
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	98.94
2pt6_A	321	Spermidine synthase; transferase, structural genom	98.93
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	98.93
2qm3_A	373	Predicted methyltransferase; putative methyltransf	98.93
2h00_A	254	Methyltransferase 10 domain containing protein; st	98.93
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	98.93
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	98.92
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	98.92
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	98.92
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	98.92
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	98.91
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	98.91
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	98.91
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	98.91
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	98.89
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	98.89
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	98.89
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	98.89
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	98.88
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	98.88
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	98.88
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	98.88
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	98.88
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	98.88
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	98.88
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	98.88
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	98.87
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	98.87
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	98.87
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	98.87
2i7c_A	283	Spermidine synthase; transferase, structural genom	98.86
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	98.86
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	98.86
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	98.86
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	98.86
1ws6_A	171	Methyltransferase; structural genomics, riken stru	98.86
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	98.86
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	98.85
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	98.84
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	98.84
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	98.84
3sso_A	419	Methyltransferase; macrolide, natural product, ros	98.83
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	98.83
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	98.83
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	98.83
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	98.82
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	98.82
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	98.82
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	98.82
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	98.82
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	98.82
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	98.8
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	98.8
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	98.8
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	98.8
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	98.8
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	98.79
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	98.79
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	98.79
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	98.78
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	98.78
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	98.78
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	98.77
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	98.77
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	98.77
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	98.76
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	98.76
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	98.76
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	98.76
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	98.76
2o07_A	304	Spermidine synthase; structural genomics, structur	98.76
2o07_A	304	Spermidine synthase; structural genomics, structur	98.75
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	98.75
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	98.75
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	98.75
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	98.75
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	98.74
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	98.72
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	98.72
2pt6_A	321	Spermidine synthase; transferase, structural genom	98.72
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	98.71
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	98.71
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	98.71
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	98.71
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	98.71
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	98.71
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	98.71
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	98.7
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	98.7
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	98.7
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	98.69
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	98.69
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	98.69
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	98.69
2i7c_A	283	Spermidine synthase; transferase, structural genom	98.68
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	98.68
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	98.67
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	98.67
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	98.67
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	98.66
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	98.66
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	98.65
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	98.65
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	98.65
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	98.64
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	98.64
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	98.64
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	98.63
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	98.63
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	98.62
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	98.62
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	98.6
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	98.59

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=99.84  E-value=3.4e-20  Score=180.90  Aligned_cols=183  Identities=21%  Similarity=0.306  Sum_probs=125.9

Q ss_pred             CCcccccchhHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcC-ChHHHHHHHHHHHhcCCCCC-C
Q 009871          310 RSTGLMLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDG-DSIALDLLAQNVTANLKPPF-L  387 (523)
Q Consensus       310 ~~~G~~~W~~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~-~~~~l~~~~~n~~~n~~~~~-~  387 (523)
                      ..+|+.+|+++..|++++..+....++++|||||||+|.++..++..++.+|+++|+ ++.+++.+++|+..|..... .
T Consensus        54 ~~~g~~~~~~~~~l~~~l~~~~~~~~~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~  133 (281)
T 3bzb_A           54 PLWTSHVWSGARALADTLCWQPELIAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTANSCSS  133 (281)
T ss_dssp             --------CHHHHHHHHHHHCGGGTTTCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHTTCC-----
T ss_pred             CCCCceeecHHHHHHHHHHhcchhcCCCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHHhhhhhccc
Confidence            678999999999999999988766788999999999998888888877669999999 89999999999966533211 1


Q ss_pred             -----CceEEEeeecCCCCcchhhhh-hcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCC---C--CcEEE
Q 009871          388 -----AKLITKRLEWGNRDHIEAIKE-ENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLRED---Q--QPAFI  456 (523)
Q Consensus       388 -----~~v~~~~ldw~~~~~~~~~~~-~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~---~--~g~~~  456 (523)
                           .++.+..++|++...  .+.. +...+||+|+++|++|+...+..+++++.++|         +   |  +|.++
T Consensus       134 ~~~~~~~v~~~~~~~~~~~~--~~~~~~~~~~fD~Ii~~dvl~~~~~~~~ll~~l~~~L---------k~~~p~~gG~l~  202 (281)
T 3bzb_A          134 ETVKRASPKVVPYRWGDSPD--SLQRCTGLQRFQVVLLADLLSFHQAHDALLRSVKMLL---------ALPANDPTAVAL  202 (281)
T ss_dssp             -----CCCEEEECCTTSCTH--HHHHHHSCSSBSEEEEESCCSCGGGHHHHHHHHHHHB---------CCTTTCTTCEEE
T ss_pred             ccCCCCCeEEEEecCCCccH--HHHhhccCCCCCEEEEeCcccChHHHHHHHHHHHHHh---------cccCCCCCCEEE
Confidence                 368888899997421  1111 13568999999999999999999999999999         5   5  99888


Q ss_pred             EEEeecCC----ChhHHHHHHHHcC-CEEEEEcCCCCCCCCcchhhcccccCCCCccccC
Q 009871          457 LCHIFRQV----DEPSMLSAATQCG-FRLVDKWPSKNSASPSESIISSWFSENGHEVYLP  511 (523)
Q Consensus       457 l~~~~r~~----~~~~~~~~~~~~g-f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  511 (523)
                      ++...++.    ....|++.+++.| |++..+.....        ...+|+....++.++
T Consensus       203 v~~~~~~~~~~~~~~~~~~~l~~~G~f~v~~~~~~~~--------~~~~f~~~~~~~~~r  254 (281)
T 3bzb_A          203 VTFTHHRPHLAERDLAFFRLVNADGALIAEPWLSPLQ--------MDPMFPDDPGDVCIR  254 (281)
T ss_dssp             EEECC--------CTHHHHHHHHSTTEEEEEEECCC------------------------
T ss_pred             EEEEeeecccchhHHHHHHHHHhcCCEEEEEeccccc--------cccccccCCcchhcc
Confidence            77666542    2457889999999 99999866321        123566666666553

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=99.79  E-value=4.3e-17  Score=177.38  Aligned_cols=169  Identities=18%  Similarity=0.187  Sum_probs=114.9

Q ss_pred             EEEEEcCceEEEEEecccccccCCCcccccchhHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcC
Q 009871          287 IEVNLRDRSFKIEVLSKEYQHTCRSTGLMLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDG  366 (523)
Q Consensus       287 ~~~~~~~~~~~i~~~~~~~~~~~~~~G~~~W~~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~  366 (523)
                      ..+..+|..+.+...  .    .-.||...  .......++...   .+|++|||+|||||+++..+++.++.+|+++|+
T Consensus       502 ~~v~E~g~~~~v~~~--~----~~~tG~f~--d~r~~r~~l~~~---~~g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~  570 (703)
T 3v97_A          502 LEVTEYNAHLWVNLT--D----YLDTGLFL--DHRIARRMLGQM---SKGKDFLNLFSYTGSATVHAGLGGARSTTTVDM  570 (703)
T ss_dssp             EEEEETTEEEEECSS--S----SSSCSCCG--GGHHHHHHHHHH---CTTCEEEEESCTTCHHHHHHHHTTCSEEEEEES
T ss_pred             EEEEECCEEEEEecc--c----cccCCCcc--cHHHHHHHHHHh---cCCCcEEEeeechhHHHHHHHHCCCCEEEEEeC
Confidence            456667766665421  1    12455322  122223333332   378899999999999999888888889999999


Q ss_pred             ChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCccEEEEccccCC-----------CCChHHHHHH
Q 009871          367 DSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYI-----------PEAILPLFAT  435 (523)
Q Consensus       367 ~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~fD~Ii~~d~~y~-----------~~~~~~l~~~  435 (523)
                      |+.+++.+++|++.|++..  .++.+...|..+     .+ ....++||+|++....+.           ...+..++..
T Consensus       571 s~~al~~a~~N~~~ngl~~--~~v~~i~~D~~~-----~l-~~~~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~~~ll~~  642 (703)
T 3v97_A          571 SRTYLEWAERNLRLNGLTG--RAHRLIQADCLA-----WL-REANEQFDLIFIDPPTFSNSKRMEDAFDVQRDHLALMKD  642 (703)
T ss_dssp             CHHHHHHHHHHHHHTTCCS--TTEEEEESCHHH-----HH-HHCCCCEEEEEECCCSBC-------CCBHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCCc--cceEEEecCHHH-----HH-HhcCCCccEEEECCccccCCccchhHHHHHHHHHHHHHH
Confidence            9999999999999998752  356665544322     11 223468999998654432           1246678888


Q ss_pred             HHHHhhccCCCCCCCCCcEEEEEEeecCCChhHHHHHHHHcCCEEEEEcC
Q 009871          436 AKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLVDKWP  485 (523)
Q Consensus       436 l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~~~~~~~~gf~~~~~~~  485 (523)
                      +.++|         +|||.++++...+.....  .+.+.+.|+++..+..
T Consensus       643 a~~~L---------kpgG~L~~s~~~~~~~~~--~~~l~~~g~~~~~i~~  681 (703)
T 3v97_A          643 LKRLL---------RAGGTIMFSNNKRGFRMD--LDGLAKLGLKAQEITQ  681 (703)
T ss_dssp             HHHHE---------EEEEEEEEEECCTTCCCC--HHHHHHTTEEEEECTT
T ss_pred             HHHhc---------CCCcEEEEEECCcccccC--HHHHHHcCCceeeeee
Confidence            89999         679999998877654442  4556678988776655

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=99.65  E-value=4.3e-16  Score=150.33  Aligned_cols=161  Identities=14%  Similarity=0.137  Sum_probs=111.7

Q ss_pred             HhhHHHHHHHHhcccccccc--hhhhHHHHhhhh--cCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHH
Q 009871           40 EAKKYWDLFYKRHQDRFFKD--RHYLDKEWGRYF--SGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLV  115 (523)
Q Consensus        40 ~~~~~Wd~~y~~~~~~f~~~--~~~l~~~~~~~~--~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a  115 (523)
                      +...||+.||+.+...++++  ++|+.+.+.+++  ...++.+|||||||+|.++..++..+. .+|+|+|+|+.|++.|
T Consensus        16 ~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~vLDiGCG~G~~~~~~~~~~~-~~v~g~D~s~~~l~~a   94 (263)
T 2a14_A           16 LPRDYLATYYSFDGSPSPEAEMLKFNLECLHKTFGPGGLQGDTLIDIGSGPTIYQVLAACDSF-QDITLSDFTDRNREEL   94 (263)
T ss_dssp             CHHHHHHHHCCCCCSCCHHHHHHHHHHHHHHHHHSTTSCCEEEEEESSCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHH
T ss_pred             CHHHHHHHhcCCCcccchhhHHHHHHHHHHHHHhcCCCCCCceEEEeCCCccHHHHHHHHhhh-cceeeccccHHHHHHH
Confidence            35689999999877776665  788988888776  335678999999999998877666631 2699999999999999


Q ss_pred             HhccccCC------------------------------CcEE-EEEeeccCCccCCCCCCCceeEEEE------------
Q 009871          116 MTHKDFTE------------------------------TRVS-TFVCDLISDDLSRQISPSSIDIVTM------------  152 (523)
Q Consensus       116 ~~~~~~~~------------------------------~~v~-~~~~d~~~~~~~~~~~~~~fD~V~~------------  152 (523)
                      +++.....                              .++. ++++|+.+.+...+...++||+|++            
T Consensus        95 ~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~  174 (263)
T 2a14_A           95 EKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLD  174 (263)
T ss_dssp             HHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHH
T ss_pred             HHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHHhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHH
Confidence            87643211                              1243 8899998742111123579999999            


Q ss_pred             ---------ccccccceeeecc------eEEecCCeEE-EeeCHHHHHHHHHhCCCcEEEEEeEe
Q 009871          153 ---------ERLTGKDQKISEN------FYVRGDGTRA-FYFSNDFLTSLFKENGFDVEELGLCC  201 (523)
Q Consensus       153 ---------~~~~~~~~~~~~~------~~~~~~g~~~-~~~~~~~l~~ll~~~Gf~~~~~~~~~  201 (523)
                               .+++++++.+.-.      .+..+++.+. ++++.+++.++|+++||.++++....
T Consensus       175 ~~~~~l~~i~r~LKPGG~li~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~l~~aGF~i~~~~~~~  239 (263)
T 2a14_A          175 AYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKREFSCVALEKGEVEQAVLDAGFDIEQLLHSP  239 (263)
T ss_dssp             HHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEECCCCCHHHHHHHHHHTTEEEEEEEEEC
T ss_pred             HHHHHHHHHHHHcCCCcEEEEEEeecCccceeCCeEeeccccCHHHHHHHHHHCCCEEEEEeecc
Confidence                     2445555554321      1111211111 23599999999999999998876653

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=99.63  E-value=1.7e-15  Score=144.86  Aligned_cols=152  Identities=13%  Similarity=0.185  Sum_probs=101.0

Q ss_pred             HhhHHHHHHHHhcccccccc--hhhhHHHHhhhhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHh
Q 009871           40 EAKKYWDLFYKRHQDRFFKD--RHYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMT  117 (523)
Q Consensus        40 ~~~~~Wd~~y~~~~~~f~~~--~~~l~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~  117 (523)
                      ....||+..|+.....|...  ...+...+..+....++.+|||+|||+|..+..|+++  +++|+|||+|+.||+.|++
T Consensus        31 ~~~~~Wd~~y~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vLD~GCG~G~~~~~La~~--G~~V~gvD~S~~~i~~a~~  108 (252)
T 2gb4_A           31 LTLEDWKEKWVTRHISFHQEQGHQLLKKHLDTFLKGQSGLRVFFPLCGKAIEMKWFADR--GHTVVGVEISEIGIREFFA  108 (252)
T ss_dssp             CCHHHHHHHHHHTCCTTCCTTCCHHHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHT--TCEEEEECSCHHHHHHHHH
T ss_pred             CCHHHHHHHHhcCCCCcccCCCCHHHHHHHHHhccCCCCCeEEEeCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHH
Confidence            34578999888765444321  1223333343333346789999999999999999998  6689999999999999987


Q ss_pred             cccc------------------CCCcEEEEEeeccCCccCCCCCC-CceeEEEE---cccccccee---eec-ceEEecC
Q 009871          118 HKDF------------------TETRVSTFVCDLISDDLSRQISP-SSIDIVTM---ERLTGKDQK---ISE-NFYVRGD  171 (523)
Q Consensus       118 ~~~~------------------~~~~v~~~~~d~~~~~~~~~~~~-~~fD~V~~---~~~~~~~~~---~~~-~~~~~~~  171 (523)
                      +...                  ...+++++++|+.++    ++++ ++||+|++   ...+....+   +.. ...++++
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l----~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpG  184 (252)
T 2gb4_A          109 EQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDL----PRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKE  184 (252)
T ss_dssp             HTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTG----GGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEE
T ss_pred             hcccccccccccccccccccccCCCceEEEECccccC----CcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCC
Confidence            5421                  236799999999876    4443 79999997   100010000   000 0134555


Q ss_pred             CeEE---------------EeeCHHHHHHHHHhCCCcEEEEE
Q 009871          172 GTRA---------------FYFSNDFLTSLFKENGFDVEELG  198 (523)
Q Consensus       172 g~~~---------------~~~~~~~l~~ll~~~Gf~~~~~~  198 (523)
                      |.++               +.++.+++.++|.. +|+++...
T Consensus       185 G~l~l~~~~~~~~~~~g~~~~~~~~el~~~l~~-~f~v~~~~  225 (252)
T 2gb4_A          185 FQYLVAVLSYDPTKHAGPPFYVPSAELKRLFGT-KCSMQCLE  225 (252)
T ss_dssp             EEEEEEEEECCTTSCCCSSCCCCHHHHHHHHTT-TEEEEEEE
T ss_pred             eEEEEEEEecCCccCCCCCCCCCHHHHHHHhhC-CeEEEEEe
Confidence            5542               12588999999986 59887765

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=99.59  E-value=1.9e-14  Score=138.48  Aligned_cols=161  Identities=11%  Similarity=0.054  Sum_probs=119.7

Q ss_pred             cCceEEEEEecccccccCCCcccccchhHHHHHHHHhcCCCCC-CCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHH
Q 009871          292 RDRSFKIEVLSKEYQHTCRSTGLMLWESAHLMAAVLARNPTIV-AGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIA  370 (523)
Q Consensus       292 ~~~~~~i~~~~~~~~~~~~~~G~~~W~~a~~la~~l~~~~~~~-~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~  370 (523)
                      ....++|.+...         |......+.+|+.++.    .. ++.+|||+|||+|.++..++..+..+|+++|+++.+
T Consensus        18 ~~~~~~i~q~~~---------~~~~~~d~~ll~~~~~----~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~   84 (259)
T 3lpm_A           18 LAENLRIIQSPS---------VFSFSIDAVLLAKFSY----LPIRKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERL   84 (259)
T ss_dssp             TTTTEEEEEBTT---------TBCCCHHHHHHHHHCC----CCSSCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHH
T ss_pred             cCCCEEEEeCCC---------CccCcHHHHHHHHHhc----CCCCCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHH
Confidence            344566665433         3444455778888762    33 678999999999999998888877799999999999


Q ss_pred             HHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCccEEEEccccCCC--------------------CChH
Q 009871          371 LDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIP--------------------EAIL  430 (523)
Q Consensus       371 l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~--------------------~~~~  430 (523)
                      ++.+++|+..|+..   .++.+...|+.+..     ..+..++||+|+++...+..                    ..+.
T Consensus        85 ~~~a~~n~~~~~~~---~~v~~~~~D~~~~~-----~~~~~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~  156 (259)
T 3lpm_A           85 ADMAKRSVAYNQLE---DQIEIIEYDLKKIT-----DLIPKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLE  156 (259)
T ss_dssp             HHHHHHHHHHTTCT---TTEEEECSCGGGGG-----GTSCTTCEEEEEECCCC-----------------------HHHH
T ss_pred             HHHHHHHHHHCCCc---ccEEEEECcHHHhh-----hhhccCCccEEEECCCCCCCccccCCCCchHHHhhhccccCCHH
Confidence            99999999999875   46777766654321     11335799999998766544                    2356


Q ss_pred             HHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhHHHHHHHHcCCEEEEEc
Q 009871          431 PLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLVDKW  484 (523)
Q Consensus       431 ~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~~~~~~~~gf~~~~~~  484 (523)
                      .+++.+.++|         +|+|.++++..  ......+...++++||.+.++.
T Consensus       157 ~~l~~~~~~L---------kpgG~l~~~~~--~~~~~~~~~~l~~~~~~~~~~~  199 (259)
T 3lpm_A          157 DTIRVAASLL---------KQGGKANFVHR--PERLLDIIDIMRKYRLEPKRIQ  199 (259)
T ss_dssp             HHHHHHHHHE---------EEEEEEEEEEC--TTTHHHHHHHHHHTTEEEEEEE
T ss_pred             HHHHHHHHHc---------cCCcEEEEEEc--HHHHHHHHHHHHHCCCceEEEE
Confidence            7999999999         67999999753  4456678899999999988763

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.59  E-value=4.4e-15  Score=142.68  Aligned_cols=73  Identities=21%  Similarity=0.302  Sum_probs=62.5

Q ss_pred             CCCCeEEEECCCccccHHHHHhhC--CCCEEEEEeCCHHHHHHHHhcccc--CCCcEEEEEeeccCCccCCCCCCCceeE
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAY--PDVFVYACDFSPRAVNLVMTHKDF--TETRVSTFVCDLISDDLSRQISPSSIDI  149 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~--~~~~v~gvD~S~~~l~~a~~~~~~--~~~~v~~~~~d~~~~~~~~~~~~~~fD~  149 (523)
                      .++.+|||||||+|..+..|+++.  ++++|+|||+|+.||+.|+++...  ...+++++++|+.++    ++  +.||+
T Consensus        69 ~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~----~~--~~~d~  142 (261)
T 4gek_A           69 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDI----AI--ENASM  142 (261)
T ss_dssp             CTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTC----CC--CSEEE
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccc----cc--ccccc
Confidence            578899999999999999999884  578999999999999999997643  235899999999876    33  46999


Q ss_pred             EEE
Q 009871          150 VTM  152 (523)
Q Consensus       150 V~~  152 (523)
                      |++
T Consensus       143 v~~  145 (261)
T 4gek_A          143 VVL  145 (261)
T ss_dssp             EEE
T ss_pred             cee
Confidence            999

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=99.58  E-value=6e-15  Score=139.30  Aligned_cols=152  Identities=17%  Similarity=0.241  Sum_probs=94.1

Q ss_pred             hHHHHHHHHhcccccccchhhhHHHHhhhhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhcccc
Q 009871           42 KKYWDLFYKRHQDRFFKDRHYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDF  121 (523)
Q Consensus        42 ~~~Wd~~y~~~~~~f~~~~~~l~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~  121 (523)
                      ..||+.++.........-...+    ...+  +++.+|||+|||+|..+..+++.  +.+|+|+|+|+.|++.|+++...
T Consensus         3 ~~yw~~~~~~~~~~~~~~~~~~----~~~~--~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~   74 (235)
T 3sm3_A            3 ESYWEKVSGKNIPSSLDLYPII----HNYL--QEDDEILDIGCGSGKISLELASK--GYSVTGIDINSEAIRLAETAARS   74 (235)
T ss_dssp             ---------------CCCCTTH----HHHC--CTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTTC
T ss_pred             hhHHHHHhhccCCCHHHHHHHH----HHhC--CCCCeEEEECCCCCHHHHHHHhC--CCeEEEEECCHHHHHHHHHHHHh
Confidence            4688887765322111111111    1222  46789999999999999999988  66899999999999999997643


Q ss_pred             CC------CcEEEEEeeccCCccCCCCCCCceeEEEE--------------------ccccccceeeecceEEe------
Q 009871          122 TE------TRVSTFVCDLISDDLSRQISPSSIDIVTM--------------------ERLTGKDQKISENFYVR------  169 (523)
Q Consensus       122 ~~------~~v~~~~~d~~~~~~~~~~~~~~fD~V~~--------------------~~~~~~~~~~~~~~~~~------  169 (523)
                      ..      .++++.++|+..+    ++++++||+|++                    .+.+++++.+.-..+..      
T Consensus        75 ~~~~~~~~~~~~~~~~d~~~~----~~~~~~~D~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~  150 (235)
T 3sm3_A           75 PGLNQKTGGKAEFKVENASSL----SFHDSSFDFAVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQNWHLKL  150 (235)
T ss_dssp             CSCCSSSSCEEEEEECCTTSC----CSCTTCEEEEEEESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCTTSHH
T ss_pred             cCCccccCcceEEEEeccccc----CCCCCceeEEEEcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECCcchhHHH
Confidence            32      3689999999877    667889999999                    12223333322100000      


Q ss_pred             -------------cC-------------CeEEEeeCHHHHHHHHHhCCCcEEEEEeEeeeee
Q 009871          170 -------------GD-------------GTRAFYFSNDFLTSLFKENGFDVEELGLCCKQVE  205 (523)
Q Consensus       170 -------------~~-------------g~~~~~~~~~~l~~ll~~~Gf~~~~~~~~~~~~~  205 (523)
                                   ..             ....++++.+++.++|+++||+++.+........
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aGf~~~~~~~~~~~~~  212 (235)
T 3sm3_A          151 YRKRYLHDFPITKEEGSFLARDPETGETEFIAHHFTEKELVFLLTDCRFEIDYFRVKELETR  212 (235)
T ss_dssp             HHHHHHHHHHHHCSTTEEEEECTTTCCEEEEEECBCHHHHHHHHHTTTEEEEEEEEEEEECT
T ss_pred             HHHHhhhhccchhhhcceEecccccCCcceeeEeCCHHHHHHHHHHcCCEEEEEEecceeec
Confidence                         00             1123467999999999999999998876544333

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=99.58  E-value=3.4e-15  Score=141.44  Aligned_cols=163  Identities=12%  Similarity=0.117  Sum_probs=109.9

Q ss_pred             hhHHHHHHHHhcccccccc--hhhhHHHHhhhhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhc
Q 009871           41 AKKYWDLFYKRHQDRFFKD--RHYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTH  118 (523)
Q Consensus        41 ~~~~Wd~~y~~~~~~f~~~--~~~l~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~  118 (523)
                      ...+|+..|......|...  ...+...+. ... .++.+|||||||+|..+..+++.  +.+|+|+|+|+.|++.|+++
T Consensus        32 ~~~~w~~~~~~~~~~~~~~~~~~~l~~~~~-~~~-~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~  107 (235)
T 3lcc_A           32 EEGGWEKCWEEEITPWDQGRATPLIVHLVD-TSS-LPLGRALVPGCGGGHDVVAMASP--ERFVVGLDISESALAKANET  107 (235)
T ss_dssp             HHHHHHHHHHTTCCTTCCSSCCHHHHHHHH-TTC-SCCEEEEEETCTTCHHHHHHCBT--TEEEEEECSCHHHHHHHHHH
T ss_pred             CHHHHHHHHhcCCCCcccCCCCHHHHHHHH-hcC-CCCCCEEEeCCCCCHHHHHHHhC--CCeEEEEECCHHHHHHHHHH
Confidence            4578999988765444321  112222222 122 23469999999999999999875  67899999999999999997


Q ss_pred             ccc--CCCcEEEEEeeccCCccCCCCCCCceeEEEEccc---ccc--cee-eec-ceEEecCCeEEE-------------
Q 009871          119 KDF--TETRVSTFVCDLISDDLSRQISPSSIDIVTMERL---TGK--DQK-ISE-NFYVRGDGTRAF-------------  176 (523)
Q Consensus       119 ~~~--~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~~~---~~~--~~~-~~~-~~~~~~~g~~~~-------------  176 (523)
                      ...  ...+++++++|+.+.    + ++++||+|++...   ...  ... +.. .-.++++|.++.             
T Consensus       108 ~~~~~~~~~v~~~~~d~~~~----~-~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~  182 (235)
T 3lcc_A          108 YGSSPKAEYFSFVKEDVFTW----R-PTELFDLIFDYVFFCAIEPEMRPAWAKSMYELLKPDGELITLMYPITDHVGGPP  182 (235)
T ss_dssp             HTTSGGGGGEEEECCCTTTC----C-CSSCEEEEEEESSTTTSCGGGHHHHHHHHHHHEEEEEEEEEEECCCSCCCSCSS
T ss_pred             hhccCCCcceEEEECchhcC----C-CCCCeeEEEEChhhhcCCHHHHHHHHHHHHHHCCCCcEEEEEEecccccCCCCC
Confidence            653  235799999999875    2 4569999998111   010  000 000 013455555442             


Q ss_pred             -eeCHHHHHHHHHhCCCcEEEEEeEeeeeeecccCcc
Q 009871          177 -YFSNDFLTSLFKENGFDVEELGLCCKQVENRARELV  212 (523)
Q Consensus       177 -~~~~~~l~~ll~~~Gf~~~~~~~~~~~~~~~~~~~~  212 (523)
                       .++.+++.++|+++||+++.+.........+.....
T Consensus       183 ~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~g~e~  219 (235)
T 3lcc_A          183 YKVDVSTFEEVLVPIGFKAVSVEENPHAIPTRKGKEK  219 (235)
T ss_dssp             CCCCHHHHHHHHGGGTEEEEEEEECTTCCTTTTTSCE
T ss_pred             ccCCHHHHHHHHHHcCCeEEEEEecCCccccccCHHH
Confidence             358999999999999999999887776666655433

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=99.58  E-value=3.9e-14  Score=137.16  Aligned_cols=151  Identities=9%  Similarity=0.049  Sum_probs=119.5

Q ss_pred             cchhHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEee
Q 009871          316 LWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRL  395 (523)
Q Consensus       316 ~W~~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l  395 (523)
                      ..++...+.+.+.......++.+|||||||+|.++..++.....+|+++|+|+.+++.+++++..+++.   .++.+...
T Consensus        42 ~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~---~~~~~~~~  118 (273)
T 3bus_A           42 VDDATDRLTDEMIALLDVRSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLA---NRVTFSYA  118 (273)
T ss_dssp             HHHHHHHHHHHHHHHSCCCTTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHHHHHHHTTCT---TTEEEEEC
T ss_pred             HHHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHhcCCC---cceEEEEC
Confidence            344555666777666666688999999999998888888766679999999999999999999887764   46777777


Q ss_pred             ecCCCCcchhhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecC------------
Q 009871          396 EWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ------------  463 (523)
Q Consensus       396 dw~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~------------  463 (523)
                      |+.+.       ++++++||+|++.+++++......+++.+.++|         +|||.+++......            
T Consensus       119 d~~~~-------~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L---------~pgG~l~i~~~~~~~~~~~~~~~~~~  182 (273)
T 3bus_A          119 DAMDL-------PFEDASFDAVWALESLHHMPDRGRALREMARVL---------RPGGTVAIADFVLLAPVEGAKKEAVD  182 (273)
T ss_dssp             CTTSC-------CSCTTCEEEEEEESCTTTSSCHHHHHHHHHTTE---------EEEEEEEEEEEEESSCCCHHHHHHHH
T ss_pred             ccccC-------CCCCCCccEEEEechhhhCCCHHHHHHHHHHHc---------CCCeEEEEEEeeccCCCChhHHHHHH
Confidence            66543       234568999999999999999999999999999         67999988764421            


Q ss_pred             -----------CChhHHHHHHHHcCCEEEEEcC
Q 009871          464 -----------VDEPSMLSAATQCGFRLVDKWP  485 (523)
Q Consensus       464 -----------~~~~~~~~~~~~~gf~~~~~~~  485 (523)
                                 .+...+.+.++++||++.++..
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~  215 (273)
T 3bus_A          183 AFRAGGGVLSLGGIDEYESDVRQAELVVTSTVD  215 (273)
T ss_dssp             HHHHHHTCCCCCCHHHHHHHHHHTTCEEEEEEE
T ss_pred             HHHhhcCccCCCCHHHHHHHHHHcCCeEEEEEE
Confidence                       2235567788899999987754

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=99.57  E-value=4.6e-15  Score=136.99  Aligned_cols=142  Identities=11%  Similarity=-0.014  Sum_probs=102.4

Q ss_pred             CCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEEE--
Q 009871           75 GRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM--  152 (523)
Q Consensus        75 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~--  152 (523)
                      ++ +|||||||+|.++..+++.  +.+|+|+|+|+.|++.|+++......++.+.++|+.++    ++++++||+|++  
T Consensus        30 ~~-~vLdiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~----~~~~~~fD~v~~~~  102 (202)
T 2kw5_A           30 QG-KILCLAEGEGRNACFLASL--GYEVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADF----DIVADAWEGIVSIF  102 (202)
T ss_dssp             SS-EEEECCCSCTHHHHHHHTT--TCEEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTB----SCCTTTCSEEEEEC
T ss_pred             CC-CEEEECCCCCHhHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhc----CCCcCCccEEEEEh
Confidence            44 9999999999999999987  56899999999999999987654445799999999876    566789999998  


Q ss_pred             ---------------ccccccceeeecceEEecC-----C---eEEEeeCHHHHHHHHHhCCCcEEEEEeEeeeeeeccc
Q 009871          153 ---------------ERLTGKDQKISENFYVRGD-----G---TRAFYFSNDFLTSLFKENGFDVEELGLCCKQVENRAR  209 (523)
Q Consensus       153 ---------------~~~~~~~~~~~~~~~~~~~-----g---~~~~~~~~~~l~~ll~~~Gf~~~~~~~~~~~~~~~~~  209 (523)
                                     .+.+++++.+.-..+...+     +   ...++++.+++.++|+  ||+++.+....... ....
T Consensus       103 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~--Gf~v~~~~~~~~~~-~~g~  179 (202)
T 2kw5_A          103 CHLPSSLRQQLYPKVYQGLKPGGVFILEGFAPEQLQYNTGGPKDLDLLPKLETLQSELP--SLNWLIANNLERNL-DEGA  179 (202)
T ss_dssp             CCCCHHHHHHHHHHHHTTCCSSEEEEEEEECTTTGGGTSCCSSSGGGCCCHHHHHHHCS--SSCEEEEEEEEEEC-SCSS
T ss_pred             hcCCHHHHHHHHHHHHHhcCCCcEEEEEEeccccccCCCCCCCcceeecCHHHHHHHhc--CceEEEEEEEEeec-CCCC
Confidence                           3334455443321111100     0   1123579999999998  99999888766653 2333


Q ss_pred             CccceeEEEEEEEEecC
Q 009871          210 ELVMNRRWVQAVFCSSG  226 (523)
Q Consensus       210 ~~~~~r~~~~~~~~~~~  226 (523)
                      .....+.|++..-+|..
T Consensus       180 ~~~~~~~~i~~~~~~~~  196 (202)
T 2kw5_A          180 YHQGKAALIQLLGQKLE  196 (202)
T ss_dssp             SSCCEEEEEEEEECCCS
T ss_pred             CcccHHHHHHHHHHhhh
Confidence            33456888888766654

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=99.56  E-value=4.3e-14  Score=136.53  Aligned_cols=134  Identities=13%  Similarity=0.149  Sum_probs=109.6

Q ss_pred             CCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcC
Q 009871          332 TIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENN  411 (523)
Q Consensus       332 ~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~  411 (523)
                      ...++.+|||||||+|.++..++..+..+|+++|+|+.+++.+++++..+++.   .++.+...|+.+.       +++.
T Consensus        43 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~---~~v~~~~~d~~~~-------~~~~  112 (267)
T 3kkz_A           43 NLTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQ---NRVTGIVGSMDDL-------PFRN  112 (267)
T ss_dssp             CCCTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHTTCT---TTEEEEECCTTSC-------CCCT
T ss_pred             cCCCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCC---cCcEEEEcChhhC-------CCCC
Confidence            35678899999999999988888886669999999999999999999988775   5688888777543       2335


Q ss_pred             CCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecC-------------------CChhHHHHH
Q 009871          412 EGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ-------------------VDEPSMLSA  472 (523)
Q Consensus       412 ~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~-------------------~~~~~~~~~  472 (523)
                      ++||+|++..++++. ....+++.+.++|         +|||.+++......                   .+...+.+.
T Consensus       113 ~~fD~i~~~~~~~~~-~~~~~l~~~~~~L---------kpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (267)
T 3kkz_A          113 EELDLIWSEGAIYNI-GFERGLNEWRKYL---------KKGGYLAVSECSWFTDERPAEINDFWMDAYPEIDTIPNQVAK  182 (267)
T ss_dssp             TCEEEEEESSCGGGT-CHHHHHHHHGGGE---------EEEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCEEHHHHHHH
T ss_pred             CCEEEEEEcCCceec-CHHHHHHHHHHHc---------CCCCEEEEEEeeecCCCChHHHHHHHHHhCCCCCCHHHHHHH
Confidence            789999999999988 7899999999999         67999998765421                   123456788


Q ss_pred             HHHcCCEEEEEcC
Q 009871          473 ATQCGFRLVDKWP  485 (523)
Q Consensus       473 ~~~~gf~~~~~~~  485 (523)
                      ++++||++.++..
T Consensus       183 l~~aGf~~v~~~~  195 (267)
T 3kkz_A          183 IHKAGYLPVATFI  195 (267)
T ss_dssp             HHHTTEEEEEEEE
T ss_pred             HHHCCCEEEEEEE
Confidence            8999999988754

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=99.56  E-value=1.8e-14  Score=138.12  Aligned_cols=141  Identities=14%  Similarity=0.137  Sum_probs=111.3

Q ss_pred             HHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcc
Q 009871          324 AAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHI  403 (523)
Q Consensus       324 a~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~  403 (523)
                      .+.+.......++.+|||||||+|.++..++.....+|+++|+++.+++.+++++..+++.   .++.+...|+.+..  
T Consensus        25 ~~~l~~~~~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~---~~v~~~~~d~~~~~--   99 (256)
T 1nkv_A           25 YATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVS---ERVHFIHNDAAGYV--   99 (256)
T ss_dssp             HHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCT---TTEEEEESCCTTCC--
T ss_pred             HHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCC---cceEEEECChHhCC--
Confidence            3344443445678899999999998888888776668999999999999999999987764   46778777765431  


Q ss_pred             hhhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec--------------------C
Q 009871          404 EAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFR--------------------Q  463 (523)
Q Consensus       404 ~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r--------------------~  463 (523)
                           . +++||+|++..++++......+++.+.++|         +|||.+++.....                    .
T Consensus       100 -----~-~~~fD~V~~~~~~~~~~~~~~~l~~~~r~L---------kpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (256)
T 1nkv_A          100 -----A-NEKCDVAACVGATWIAGGFAGAEELLAQSL---------KPGGIMLIGEPYWRQLPATEEIAQACGVSSTSDF  164 (256)
T ss_dssp             -----C-SSCEEEEEEESCGGGTSSSHHHHHHHTTSE---------EEEEEEEEEEEEETTCCSSHHHHHTTTCSCGGGS
T ss_pred             -----c-CCCCCEEEECCChHhcCCHHHHHHHHHHHc---------CCCeEEEEecCcccCCCChHHHHHHHhccccccc
Confidence                 2 468999999999999888999999999999         6799999876432                    1


Q ss_pred             CChhHHHHHHHHcCCEEEEEc
Q 009871          464 VDEPSMLSAATQCGFRLVDKW  484 (523)
Q Consensus       464 ~~~~~~~~~~~~~gf~~~~~~  484 (523)
                      .+...+.+.++++||++.++.
T Consensus       165 ~~~~~~~~~l~~aGf~~~~~~  185 (256)
T 1nkv_A          165 LTLPGLVGAFDDLGYDVVEMV  185 (256)
T ss_dssp             CCHHHHHHHHHTTTBCCCEEE
T ss_pred             CCHHHHHHHHHHCCCeeEEEE
Confidence            233567788899999987663

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.56  E-value=8.2e-14  Score=133.57  Aligned_cols=135  Identities=12%  Similarity=0.135  Sum_probs=110.1

Q ss_pred             CCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhc
Q 009871          331 PTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEEN  410 (523)
Q Consensus       331 ~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~  410 (523)
                      ....++.+|||||||+|.++..++..++.+|+++|+++.+++.+++++..+++.   .++.+...|+.+.       +++
T Consensus        42 ~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~---~~~~~~~~d~~~~-------~~~  111 (257)
T 3f4k_A           42 NELTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCA---DRVKGITGSMDNL-------PFQ  111 (257)
T ss_dssp             CCCCTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTTCT---TTEEEEECCTTSC-------SSC
T ss_pred             hcCCCCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCCC---CceEEEECChhhC-------CCC
Confidence            345578899999999999998888887669999999999999999999998875   4678877777443       234


Q ss_pred             CCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecC-------------------CChhHHHH
Q 009871          411 NEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ-------------------VDEPSMLS  471 (523)
Q Consensus       411 ~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~-------------------~~~~~~~~  471 (523)
                      +++||+|++..++++. ....+++.+.++|         +|||.+++......                   .+...+.+
T Consensus       112 ~~~fD~v~~~~~l~~~-~~~~~l~~~~~~L---------~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (257)
T 3f4k_A          112 NEELDLIWSEGAIYNI-GFERGMNEWSKYL---------KKGGFIAVSEASWFTSERPAEIEDFWMDAYPEISVIPTCID  181 (257)
T ss_dssp             TTCEEEEEEESCSCCC-CHHHHHHHHHTTE---------EEEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCCBHHHHHH
T ss_pred             CCCEEEEEecChHhhc-CHHHHHHHHHHHc---------CCCcEEEEEEeeccCCCChHHHHHHHHHhCCCCCCHHHHHH
Confidence            5799999999999998 6899999999999         67999998864311                   12346678


Q ss_pred             HHHHcCCEEEEEcC
Q 009871          472 AATQCGFRLVDKWP  485 (523)
Q Consensus       472 ~~~~~gf~~~~~~~  485 (523)
                      .++++||++.....
T Consensus       182 ~l~~aGf~~v~~~~  195 (257)
T 3f4k_A          182 KMERAGYTPTAHFI  195 (257)
T ss_dssp             HHHHTTEEEEEEEE
T ss_pred             HHHHCCCeEEEEEE
Confidence            88999999988754

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=99.56  E-value=3.8e-14  Score=135.69  Aligned_cols=142  Identities=15%  Similarity=0.167  Sum_probs=111.5

Q ss_pred             HhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhh
Q 009871          327 LARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAI  406 (523)
Q Consensus       327 l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~  406 (523)
                      +.......++.+|||||||+|.++..++..+..+|+++|+++.+++.+++++.       ..++.+...|..+.      
T Consensus        36 l~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~-------~~~~~~~~~d~~~~------  102 (253)
T 3g5l_A           36 LKKMLPDFNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTT-------SPVVCYEQKAIEDI------  102 (253)
T ss_dssp             HHTTCCCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHCC-------CTTEEEEECCGGGC------
T ss_pred             HHHhhhccCCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHhhc-------cCCeEEEEcchhhC------
Confidence            33444445789999999999999888888887799999999999999998765       14566666665432      


Q ss_pred             hhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec------------------------
Q 009871          407 KEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFR------------------------  462 (523)
Q Consensus       407 ~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r------------------------  462 (523)
                       +++.++||+|+++.++++......+++.+.++|         +|||.++++....                        
T Consensus       103 -~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L---------kpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (253)
T 3g5l_A          103 -AIEPDAYNVVLSSLALHYIASFDDICKKVYINL---------KSSGSFIFSVEHPVFTADGRQDWYTDETGNKLHWPVD  172 (253)
T ss_dssp             -CCCTTCEEEEEEESCGGGCSCHHHHHHHHHHHE---------EEEEEEEEEEECHHHHSSSSCSCEECSSCCEEEEEEC
T ss_pred             -CCCCCCeEEEEEchhhhhhhhHHHHHHHHHHHc---------CCCcEEEEEeCCCccccCccccceeccCCceEEEEec
Confidence             234579999999999999999999999999999         6799998873220                        


Q ss_pred             --------------------CCChhHHHHHHHHcCCEEEEEcCCCCCCC
Q 009871          463 --------------------QVDEPSMLSAATQCGFRLVDKWPSKNSAS  491 (523)
Q Consensus       463 --------------------~~~~~~~~~~~~~~gf~~~~~~~~~~~~~  491 (523)
                                          ..+..++.+.++++||++.++....++..
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~l~~aGF~~~~~~e~~~~~~  221 (253)
T 3g5l_A          173 RYFNESMRTSHFLGEDVQKYHRTVTTYIQTLLKNGFQINSVIEPEPAPE  221 (253)
T ss_dssp             CTTCCCEEEEEETTEEEEEECCCHHHHHHHHHHTTEEEEEEECCCCCGG
T ss_pred             cccccceEEEeeccccCccEecCHHHHHHHHHHcCCeeeeeecCCCchh
Confidence                                01556788999999999999987644443

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=99.55  E-value=3.2e-14  Score=134.44  Aligned_cols=74  Identities=19%  Similarity=0.285  Sum_probs=65.5

Q ss_pred             CCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871           73 GAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM  152 (523)
Q Consensus        73 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~  152 (523)
                      ..++.+|||||||+|..+..+++.+|+.+|+|+|+|+.|++.|+++..... +++++++|+.++    +++ ++||+|++
T Consensus        42 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~d~~~~----~~~-~~fD~v~~  115 (234)
T 3dtn_A           42 DTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNL-KVKYIEADYSKY----DFE-EKYDMVVS  115 (234)
T ss_dssp             SCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCT-TEEEEESCTTTC----CCC-SCEEEEEE
T ss_pred             CCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCC-CEEEEeCchhcc----CCC-CCceEEEE
Confidence            356789999999999999999999988999999999999999999865443 899999999876    444 79999999

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=99.55  E-value=1.6e-14  Score=138.40  Aligned_cols=77  Identities=19%  Similarity=0.231  Sum_probs=66.4

Q ss_pred             hhhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCcee
Q 009871           69 RYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSID  148 (523)
Q Consensus        69 ~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD  148 (523)
                      +.++..++.+|||||||+|.++..+++.++. +|+|+|+|+.|++.|+++..  ..++++.++|+.++    ++++++||
T Consensus        38 ~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~--~~~~~~~~~d~~~~----~~~~~~fD  110 (253)
T 3g5l_A           38 KMLPDFNQKTVLDLGCGFGWHCIYAAEHGAK-KVLGIDLSERMLTEAKRKTT--SPVVCYEQKAIEDI----AIEPDAYN  110 (253)
T ss_dssp             TTCCCCTTCEEEEETCTTCHHHHHHHHTTCS-EEEEEESCHHHHHHHHHHCC--CTTEEEEECCGGGC----CCCTTCEE
T ss_pred             HhhhccCCCEEEEECCCCCHHHHHHHHcCCC-EEEEEECCHHHHHHHHHhhc--cCCeEEEEcchhhC----CCCCCCeE
Confidence            3445457889999999999999999998543 79999999999999999765  46899999999877    66789999


Q ss_pred             EEEE
Q 009871          149 IVTM  152 (523)
Q Consensus       149 ~V~~  152 (523)
                      +|++
T Consensus       111 ~v~~  114 (253)
T 3g5l_A          111 VVLS  114 (253)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9999

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=99.54  E-value=4.1e-14  Score=136.24  Aligned_cols=148  Identities=17%  Similarity=0.222  Sum_probs=116.4

Q ss_pred             cchhHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEee
Q 009871          316 LWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRL  395 (523)
Q Consensus       316 ~W~~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l  395 (523)
                      .++....+.+.+.......++.+|||+|||+|.++..++.....+|+++|+|+.+++.+++++..+      .++.+...
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~------~~~~~~~~  109 (266)
T 3ujc_A           36 ISSGGLEATKKILSDIELNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGN------NKIIFEAN  109 (266)
T ss_dssp             CSTTHHHHHHHHTTTCCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHTCCSC------TTEEEEEC
T ss_pred             cccchHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhhcC------CCeEEEEC
Confidence            344555566777776666788999999999998888888874568999999999999998876543      45677766


Q ss_pred             ecCCCCcchhhhhhcCCCccEEEEccccCCC--CChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecC----------
Q 009871          396 EWGNRDHIEAIKEENNEGFEVILGTDVSYIP--EAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ----------  463 (523)
Q Consensus       396 dw~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~--~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~----------  463 (523)
                      |+.+.       ++++++||+|++..++++.  .....+++.+.++|         +|||.+++......          
T Consensus       110 d~~~~-------~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L---------~pgG~l~~~~~~~~~~~~~~~~~~  173 (266)
T 3ujc_A          110 DILTK-------EFPENNFDLIYSRDAILALSLENKNKLFQKCYKWL---------KPTGTLLITDYCATEKENWDDEFK  173 (266)
T ss_dssp             CTTTC-------CCCTTCEEEEEEESCGGGSCHHHHHHHHHHHHHHE---------EEEEEEEEEEEEESCGGGCCHHHH
T ss_pred             ccccC-------CCCCCcEEEEeHHHHHHhcChHHHHHHHHHHHHHc---------CCCCEEEEEEeccCCcccchHHHH
Confidence            66543       2345799999999999998  88999999999999         67999998765422          


Q ss_pred             ----------CChhHHHHHHHHcCCEEEEEcC
Q 009871          464 ----------VDEPSMLSAATQCGFRLVDKWP  485 (523)
Q Consensus       464 ----------~~~~~~~~~~~~~gf~~~~~~~  485 (523)
                                .+...+.+.++++||++.++..
T Consensus       174 ~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~  205 (266)
T 3ujc_A          174 EYVKQRKYTLITVEEYADILTACNFKNVVSKD  205 (266)
T ss_dssp             HHHHHHTCCCCCHHHHHHHHHHTTCEEEEEEE
T ss_pred             HHHhcCCCCCCCHHHHHHHHHHcCCeEEEEEe
Confidence                      2445678888999999887754

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=99.54  E-value=8.9e-15  Score=139.10  Aligned_cols=115  Identities=17%  Similarity=0.175  Sum_probs=86.9

Q ss_pred             CCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC-CCcEEEEEeeccCCccCCCCCCCceeEEEEc
Q 009871           75 GRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT-ETRVSTFVCDLISDDLSRQISPSSIDIVTME  153 (523)
Q Consensus        75 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~-~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~  153 (523)
                      ++.+|||||||+|..+..+++.+ ..+|+|+|+|+.|++.|+++.... ..+++++++|+..+    ++++++||+|++.
T Consensus        79 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~----~~~~~~fD~v~~~  153 (241)
T 2ex4_A           79 GTSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDF----TPEPDSYDVIWIQ  153 (241)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTT-CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGC----CCCSSCEEEEEEE
T ss_pred             CCCEEEEECCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhc----CCCCCCEEEEEEc
Confidence            57899999999999999988886 568999999999999999976433 35689999999876    5567799999991


Q ss_pred             ------------cccccceeeecceEEecCCeEEE------------------eeCHHHHHHHHHhCCCcEEEEEe
Q 009871          154 ------------RLTGKDQKISENFYVRGDGTRAF------------------YFSNDFLTSLFKENGFDVEELGL  199 (523)
Q Consensus       154 ------------~~~~~~~~~~~~~~~~~~g~~~~------------------~~~~~~l~~ll~~~Gf~~~~~~~  199 (523)
                                  .++....+     .++++|.+++                  .++.+++.++++++||+++++..
T Consensus       154 ~~l~~~~~~~~~~~l~~~~~-----~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~  224 (241)
T 2ex4_A          154 WVIGHLTDQHLAEFLRRCKG-----SLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAEER  224 (241)
T ss_dssp             SCGGGSCHHHHHHHHHHHHH-----HEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEEEE
T ss_pred             chhhhCCHHHHHHHHHHHHH-----hcCCCeEEEEEEccCCCcceecccCCcccCCHHHHHHHHHHcCCeEEEeee
Confidence                        11111111     2334443332                  34899999999999999887754

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=99.54  E-value=1.4e-13  Score=130.59  Aligned_cols=146  Identities=11%  Similarity=0.079  Sum_probs=114.4

Q ss_pred             ccchhHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEe
Q 009871          315 MLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKR  394 (523)
Q Consensus       315 ~~W~~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~  394 (523)
                      ..|+++..+.+.+.    ..++.+|||+|||+|.++..++..+. +|+++|+++.+++.+++++..++..    ++.+..
T Consensus         5 ~~~~~~~~~~~~~~----~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~----~v~~~~   75 (239)
T 1xxl_A            5 HHHHSLGLMIKTAE----CRAEHRVLDIGAGAGHTALAFSPYVQ-ECIGVDATKEMVEVASSFAQEKGVE----NVRFQQ   75 (239)
T ss_dssp             -CHHHHHHHHHHHT----CCTTCEEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHHTCC----SEEEEE
T ss_pred             ccCCCcchHHHHhC----cCCCCEEEEEccCcCHHHHHHHHhCC-EEEEEECCHHHHHHHHHHHHHcCCC----CeEEEe
Confidence            35777777777763    34678999999999988888887764 8999999999999999999887653    467766


Q ss_pred             eecCCCCcchhhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec------------
Q 009871          395 LEWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFR------------  462 (523)
Q Consensus       395 ldw~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r------------  462 (523)
                      .|+.+.       ++.+++||+|+++.++++......+++.+.++|         +|||.+++.....            
T Consensus        76 ~d~~~~-------~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L---------kpgG~l~~~~~~~~~~~~~~~~~~~  139 (239)
T 1xxl_A           76 GTAESL-------PFPDDSFDIITCRYAAHHFSDVRKAVREVARVL---------KQDGRFLLVDHYAPEDPVLDEFVNH  139 (239)
T ss_dssp             CBTTBC-------CSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHE---------EEEEEEEEEEECBCSSHHHHHHHHH
T ss_pred             cccccC-------CCCCCcEEEEEECCchhhccCHHHHHHHHHHHc---------CCCcEEEEEEcCCCCChhHHHHHHH
Confidence            665432       234578999999999999899999999999999         6799998865432            


Q ss_pred             -----------CCChhHHHHHHHHcCCEEEEEcC
Q 009871          463 -----------QVDEPSMLSAATQCGFRLVDKWP  485 (523)
Q Consensus       463 -----------~~~~~~~~~~~~~~gf~~~~~~~  485 (523)
                                 ..+...+.+.++++||++..+..
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~ll~~aGf~~~~~~~  173 (239)
T 1xxl_A          140 LNRLRDPSHVRESSLSEWQAMFSANQLAYQDIQK  173 (239)
T ss_dssp             HHHHHCTTCCCCCBHHHHHHHHHHTTEEEEEEEE
T ss_pred             HHHhccccccCCCCHHHHHHHHHHCCCcEEEEEe
Confidence                       12345677888899999877643

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=99.54  E-value=1.1e-13  Score=136.96  Aligned_cols=141  Identities=9%  Similarity=0.059  Sum_probs=112.2

Q ss_pred             HHHhcCCC-CCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcc
Q 009871          325 AVLARNPT-IVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHI  403 (523)
Q Consensus       325 ~~l~~~~~-~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~  403 (523)
                      +.+..... ..++.+|||+|||+|.++..++.....+|+++|+++.+++.+++|+..+++.   .++.+...|..+.   
T Consensus       106 ~~l~~~l~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~---~~v~~~~~d~~~~---  179 (312)
T 3vc1_A          106 EFLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRARELRID---DHVRSRVCNMLDT---  179 (312)
T ss_dssp             HHHHTTSCCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCT---TTEEEEECCTTSC---
T ss_pred             HHHHHHhccCCCCCEEEEecCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCC---CceEEEECChhcC---
Confidence            44555544 6678999999999999888888874468999999999999999999998775   4677777766543   


Q ss_pred             hhhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCC-------------------
Q 009871          404 EAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQV-------------------  464 (523)
Q Consensus       404 ~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~-------------------  464 (523)
                          ++.+++||+|++.+++++.. ...+++.+.++|         +|||.+++.......                   
T Consensus       180 ----~~~~~~fD~V~~~~~l~~~~-~~~~l~~~~~~L---------kpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (312)
T 3vc1_A          180 ----PFDKGAVTASWNNESTMYVD-LHDLFSEHSRFL---------KVGGRYVTITGCWNPRYGQPSKWVSQINAHFECN  245 (312)
T ss_dssp             ----CCCTTCEEEEEEESCGGGSC-HHHHHHHHHHHE---------EEEEEEEEEEEEECTTTCSCCHHHHHHHHHHTCC
T ss_pred             ----CCCCCCEeEEEECCchhhCC-HHHHHHHHHHHc---------CCCcEEEEEEccccccccchhHHHHHHHhhhcCC
Confidence                23457999999999998884 999999999999         679999887654321                   


Q ss_pred             --ChhHHHHHHHHcCCEEEEEcC
Q 009871          465 --DEPSMLSAATQCGFRLVDKWP  485 (523)
Q Consensus       465 --~~~~~~~~~~~~gf~~~~~~~  485 (523)
                        +...+.+.++++||++.++..
T Consensus       246 ~~s~~~~~~~l~~aGf~~~~~~~  268 (312)
T 3vc1_A          246 IHSRREYLRAMADNRLVPHTIVD  268 (312)
T ss_dssp             CCBHHHHHHHHHTTTEEEEEEEE
T ss_pred             CCCHHHHHHHHHHCCCEEEEEEe
Confidence              235677888999999887744

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=99.53  E-value=2.6e-13  Score=132.43  Aligned_cols=146  Identities=16%  Similarity=0.140  Sum_probs=114.2

Q ss_pred             hhHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeec
Q 009871          318 ESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEW  397 (523)
Q Consensus       318 ~~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw  397 (523)
                      ++...+.+.+.......++.+|||||||+|.++..++...+.+|+++|+|+.+++.+++++...+..   .++.+...|+
T Consensus        47 ~a~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~~~~---~~~~~~~~d~  123 (287)
T 1kpg_A           47 EAQIAKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENL---RSKRVLLAGW  123 (287)
T ss_dssp             HHHHHHHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCC---SCEEEEESCG
T ss_pred             HHHHHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCC---CCeEEEECCh
Confidence            4445566677776666788999999999998888888553459999999999999999999876654   4567666555


Q ss_pred             CCCCcchhhhhhcCCCccEEEEccccCCC--CChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecC------------
Q 009871          398 GNRDHIEAIKEENNEGFEVILGTDVSYIP--EAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ------------  463 (523)
Q Consensus       398 ~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~--~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~------------  463 (523)
                      .+         ++ ++||+|++..++++.  +....+++.+.++|         +|||.+++......            
T Consensus       124 ~~---------~~-~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L---------kpgG~l~~~~~~~~~~~~~~~~~~~~  184 (287)
T 1kpg_A          124 EQ---------FD-EPVDRIVSIGAFEHFGHERYDAFFSLAHRLL---------PADGVMLLHTITGLHPKEIHERGLPM  184 (287)
T ss_dssp             GG---------CC-CCCSEEEEESCGGGTCTTTHHHHHHHHHHHS---------CTTCEEEEEEEEECCHHHHTTTTCSC
T ss_pred             hh---------CC-CCeeEEEEeCchhhcChHHHHHHHHHHHHhc---------CCCCEEEEEEecCCCccccccccccc
Confidence            32         22 689999999999886  78999999999999         77999998765432            


Q ss_pred             ---------------------CChhHHHHHHHHcCCEEEEEcC
Q 009871          464 ---------------------VDEPSMLSAATQCGFRLVDKWP  485 (523)
Q Consensus       464 ---------------------~~~~~~~~~~~~~gf~~~~~~~  485 (523)
                                           .+...+.+.++++||++.++..
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~aGf~~~~~~~  227 (287)
T 1kpg_A          185 SFTFARFLKFIVTEIFPGGRLPSIPMVQECASANGFTVTRVQS  227 (287)
T ss_dssp             HHHHHHHHHHHHHHTSTTCCCCCHHHHHHHHHTTTCEEEEEEE
T ss_pred             cccccchhhhHHheeCCCCCCCCHHHHHHHHHhCCcEEEEEEe
Confidence                                 1345667778899999988754

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=99.53  E-value=2e-14  Score=134.10  Aligned_cols=143  Identities=13%  Similarity=0.115  Sum_probs=110.0

Q ss_pred             HHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCc
Q 009871          323 MAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDH  402 (523)
Q Consensus       323 la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~  402 (523)
                      +++.+.......++ +|||+|||+|.++..++.....+|+++|+++.+++.+++++..++..   .++.+...|..+.  
T Consensus        32 ~~~~~~~~~~~~~~-~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~---~~~~~~~~d~~~~--  105 (219)
T 3dlc_A           32 IAENIINRFGITAG-TCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLN---DRIQIVQGDVHNI--  105 (219)
T ss_dssp             HHHHHHHHHCCCEE-EEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHHHHHTTCT---TTEEEEECBTTBC--
T ss_pred             HHHHHHHhcCCCCC-EEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHhcccc---CceEEEEcCHHHC--
Confidence            44444433333344 99999999998888888875568999999999999999999988764   4677777766543  


Q ss_pred             chhhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec--------------------
Q 009871          403 IEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFR--------------------  462 (523)
Q Consensus       403 ~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r--------------------  462 (523)
                           ++++++||+|+++.++++......+++.+.++|         +|||.++++....                    
T Consensus       106 -----~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L---------~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (219)
T 3dlc_A          106 -----PIEDNYADLIVSRGSVFFWEDVATAFREIYRIL---------KSGGKTYIGGGFGNKELRDSISAEMIRKNPDWK  171 (219)
T ss_dssp             -----SSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHE---------EEEEEEEEEECCSSHHHHHHHHHHHHHHCTTHH
T ss_pred             -----CCCcccccEEEECchHhhccCHHHHHHHHHHhC---------CCCCEEEEEeccCcHHHHHHHHHHHHHhHHHHH
Confidence                 234578999999999999999999999999999         6799999874321                    


Q ss_pred             --------CCChhHHHHHHHHcCCEEEEEcC
Q 009871          463 --------QVDEPSMLSAATQCGFRLVDKWP  485 (523)
Q Consensus       463 --------~~~~~~~~~~~~~~gf~~~~~~~  485 (523)
                              ..+...+.+.++++||+..++..
T Consensus       172 ~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~  202 (219)
T 3dlc_A          172 EFNRKNISQENVERFQNVLDEIGISSYEIIL  202 (219)
T ss_dssp             HHHHHHSSHHHHHHHHHHHHHHTCSSEEEEE
T ss_pred             hhhhhccccCCHHHHHHHHHHcCCCeEEEEe
Confidence                    11224567788999999877754

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=99.53  E-value=1.2e-13  Score=135.62  Aligned_cols=135  Identities=12%  Similarity=0.145  Sum_probs=108.7

Q ss_pred             CCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcC
Q 009871          332 TIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENN  411 (523)
Q Consensus       332 ~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~  411 (523)
                      ...++.+|||+|||+|.++..++.....+|+++|+++.+++.+++++...+..   .++.+...|+.+.       ++++
T Consensus        79 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~---~~~~~~~~d~~~~-------~~~~  148 (297)
T 2o57_A           79 VLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLA---DNITVKYGSFLEI-------PCED  148 (297)
T ss_dssp             CCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCT---TTEEEEECCTTSC-------SSCT
T ss_pred             CCCCCCEEEEeCCCCCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcCCC---cceEEEEcCcccC-------CCCC
Confidence            45578899999999998888888773458999999999999999999887764   4677777766543       2345


Q ss_pred             CCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecC--------------------CChhHHHH
Q 009871          412 EGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ--------------------VDEPSMLS  471 (523)
Q Consensus       412 ~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~--------------------~~~~~~~~  471 (523)
                      ++||+|++.+++++......+++.+.++|         +|||.+++......                    .+...+.+
T Consensus       149 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~L---------kpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (297)
T 2o57_A          149 NSYDFIWSQDAFLHSPDKLKVFQECARVL---------KPRGVMAITDPMKEDGIDKSSIQPILDRIKLHDMGSLGLYRS  219 (297)
T ss_dssp             TCEEEEEEESCGGGCSCHHHHHHHHHHHE---------EEEEEEEEEEEEECTTCCGGGGHHHHHHHTCSSCCCHHHHHH
T ss_pred             CCEeEEEecchhhhcCCHHHHHHHHHHHc---------CCCeEEEEEEeccCCCCchHHHHHHHHHhcCCCCCCHHHHHH
Confidence            78999999999999888999999999999         67999998765421                    13345667


Q ss_pred             HHHHcCCEEEEEcC
Q 009871          472 AATQCGFRLVDKWP  485 (523)
Q Consensus       472 ~~~~~gf~~~~~~~  485 (523)
                      .++++||++.++..
T Consensus       220 ~l~~aGf~~~~~~~  233 (297)
T 2o57_A          220 LAKECGLVTLRTFS  233 (297)
T ss_dssp             HHHHTTEEEEEEEE
T ss_pred             HHHHCCCeEEEEEE
Confidence            88899999988754

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=99.52  E-value=8.7e-14  Score=130.02  Aligned_cols=133  Identities=13%  Similarity=0.037  Sum_probs=108.9

Q ss_pred             CCCCCeEEEECCCccHHHHHHHhcC--CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhc
Q 009871          333 IVAGKKVLELGCGCGGICSMVAAGS--ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEEN  410 (523)
Q Consensus       333 ~~~~~~VLElG~G~G~l~~~~a~~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~  410 (523)
                      ..++.+|||+|||+|.++..++..+  ..+|+++|+++.+++.+++++..++..    ++.+...|..+.       ++.
T Consensus        35 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~----~~~~~~~d~~~~-------~~~  103 (219)
T 3dh0_A           35 LKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLK----NVEVLKSEENKI-------PLP  103 (219)
T ss_dssp             CCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCT----TEEEEECBTTBC-------SSC
T ss_pred             CCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCC----cEEEEecccccC-------CCC
Confidence            3467899999999998888888875  358999999999999999999887763    577776666443       234


Q ss_pred             CCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec-----------CCChhHHHHHHHHcCCE
Q 009871          411 NEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFR-----------QVDEPSMLSAATQCGFR  479 (523)
Q Consensus       411 ~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r-----------~~~~~~~~~~~~~~gf~  479 (523)
                      .++||+|+++.++++......+++.+.++|         +|||.+++.....           ..+...+.+.++++||+
T Consensus       104 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L---------kpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~  174 (219)
T 3dh0_A          104 DNTVDFIFMAFTFHELSEPLKFLEELKRVA---------KPFAYLAIIDWKKEERDKGPPPEEVYSEWEVGLILEDAGIR  174 (219)
T ss_dssp             SSCEEEEEEESCGGGCSSHHHHHHHHHHHE---------EEEEEEEEEEECSSCCSSSCCGGGSCCHHHHHHHHHHTTCE
T ss_pred             CCCeeEEEeehhhhhcCCHHHHHHHHHHHh---------CCCeEEEEEEecccccccCCchhcccCHHHHHHHHHHCCCE
Confidence            568999999999999999999999999999         6799999876442           23457788999999999


Q ss_pred             EEEEcC
Q 009871          480 LVDKWP  485 (523)
Q Consensus       480 ~~~~~~  485 (523)
                      +.++..
T Consensus       175 ~~~~~~  180 (219)
T 3dh0_A          175 VGRVVE  180 (219)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            988755

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=99.52  E-value=3e-14  Score=132.84  Aligned_cols=129  Identities=16%  Similarity=0.196  Sum_probs=92.0

Q ss_pred             HHHhhhhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC--CCcEEEEEeeccCCccCCCC
Q 009871           65 KEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISDDLSRQI  142 (523)
Q Consensus        65 ~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~~~~~~  142 (523)
                      ..+.+.+...++ +|||||||+|.++..+++. ++.+|+|+|+|+.|++.|+++....  ..+++++++|+.++    ++
T Consensus        34 ~~~~~~~~~~~~-~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~----~~  107 (219)
T 3dlc_A           34 ENIINRFGITAG-TCIDIGSGPGALSIALAKQ-SDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNI----PI  107 (219)
T ss_dssp             HHHHHHHCCCEE-EEEEETCTTSHHHHHHHHH-SEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBC----SS
T ss_pred             HHHHHhcCCCCC-EEEEECCCCCHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHC----CC
Confidence            333344443344 9999999999999999988 6788999999999999999976433  35799999999987    67


Q ss_pred             CCCceeEEEEcc---ccccce-eeec-ceEEecCCeEEE---------------------------------eeCHHHHH
Q 009871          143 SPSSIDIVTMER---LTGKDQ-KISE-NFYVRGDGTRAF---------------------------------YFSNDFLT  184 (523)
Q Consensus       143 ~~~~fD~V~~~~---~~~~~~-~~~~-~~~~~~~g~~~~---------------------------------~~~~~~l~  184 (523)
                      ++++||+|++..   ...... .+.. ...++++|.+++                                 +++.+++.
T Consensus       108 ~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (219)
T 3dlc_A          108 EDNYADLIVSRGSVFFWEDVATAFREIYRILKSGGKTYIGGGFGNKELRDSISAEMIRKNPDWKEFNRKNISQENVERFQ  187 (219)
T ss_dssp             CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEECCSSHHHHHHHHHHHHHHCTTHHHHHHHHSSHHHHHHHH
T ss_pred             CcccccEEEECchHhhccCHHHHHHHHHHhCCCCCEEEEEeccCcHHHHHHHHHHHHHhHHHHHhhhhhccccCCHHHHH
Confidence            789999999911   100000 0000 113555665543                                 13568899


Q ss_pred             HHHHhCCCcEEEEEe
Q 009871          185 SLFKENGFDVEELGL  199 (523)
Q Consensus       185 ~ll~~~Gf~~~~~~~  199 (523)
                      ++|+++||+.+++..
T Consensus       188 ~~l~~aGf~~v~~~~  202 (219)
T 3dlc_A          188 NVLDEIGISSYEIIL  202 (219)
T ss_dssp             HHHHHHTCSSEEEEE
T ss_pred             HHHHHcCCCeEEEEe
Confidence            999999999877653

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=99.52  E-value=3.5e-14  Score=137.79  Aligned_cols=86  Identities=23%  Similarity=0.290  Sum_probs=71.2

Q ss_pred             hHHHHhhhhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC-CCcEEEEEeeccCCccCCC
Q 009871           63 LDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT-ETRVSTFVCDLISDDLSRQ  141 (523)
Q Consensus        63 l~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~-~~~v~~~~~d~~~~~~~~~  141 (523)
                      +...+.......++.+|||||||+|..+..+++.+|+.+|+|+|+|+.|++.|+++.... ..+++++++|+..+    +
T Consensus        25 l~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~----~  100 (276)
T 3mgg_A           25 LEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSL----P  100 (276)
T ss_dssp             HHHHHHTTCCCCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGC----C
T ss_pred             HHHHHhhcccCCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccC----C
Confidence            333333333346788999999999999999999988899999999999999999976433 35799999999977    6


Q ss_pred             CCCCceeEEEE
Q 009871          142 ISPSSIDIVTM  152 (523)
Q Consensus       142 ~~~~~fD~V~~  152 (523)
                      +++++||+|++
T Consensus       101 ~~~~~fD~v~~  111 (276)
T 3mgg_A          101 FEDSSFDHIFV  111 (276)
T ss_dssp             SCTTCEEEEEE
T ss_pred             CCCCCeeEEEE
Confidence            77899999999

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=99.51  E-value=3.1e-13  Score=132.93  Aligned_cols=143  Identities=13%  Similarity=0.105  Sum_probs=112.3

Q ss_pred             HHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCC
Q 009871          321 HLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNR  400 (523)
Q Consensus       321 ~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~  400 (523)
                      ....+.+.......++.+|||||||+|.++..++...+.+|+++|+|+.+++.+++++..+++.   .++.+...|+.+ 
T Consensus        58 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~---~~v~~~~~d~~~-  133 (302)
T 3hem_A           58 YAKRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSP---RRKEVRIQGWEE-  133 (302)
T ss_dssp             HHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHSCCS---SCEEEEECCGGG-
T ss_pred             HHHHHHHHHHcCCCCcCEEEEeeccCcHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCC---CceEEEECCHHH-
Confidence            3344555555566688999999999999998888883478999999999999999999988765   467777666532 


Q ss_pred             CcchhhhhhcCCCccEEEEccccCCC---------CChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecC--------
Q 009871          401 DHIEAIKEENNEGFEVILGTDVSYIP---------EAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ--------  463 (523)
Q Consensus       401 ~~~~~~~~~~~~~fD~Ii~~d~~y~~---------~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~--------  463 (523)
                              + +++||+|++..++++.         +....+++.+.++|         +|||.+++......        
T Consensus       134 --------~-~~~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~L---------kpgG~l~i~~~~~~~~~~~~~~  195 (302)
T 3hem_A          134 --------F-DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLT---------PDDGRMLLHTITIPDKEEAQEL  195 (302)
T ss_dssp             --------C-CCCCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSS---------CTTCEEEEEEEECCCHHHHHHH
T ss_pred             --------c-CCCccEEEEcchHHhcCccccccchhHHHHHHHHHHHhc---------CCCcEEEEEEEeccCccchhhc
Confidence                    2 4699999999998876         34589999999999         78999998776422        


Q ss_pred             -------------------------CChhHHHHHHHHcCCEEEEEcC
Q 009871          464 -------------------------VDEPSMLSAATQCGFRLVDKWP  485 (523)
Q Consensus       464 -------------------------~~~~~~~~~~~~~gf~~~~~~~  485 (523)
                                               .+...+.+.+++.||++.++..
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~p~~~~~s~~~~~~~l~~aGf~~~~~~~  242 (302)
T 3hem_A          196 GLTSPMSLLRFIKFILTEIFPGGRLPRISQVDYYSSNAGWKVERYHR  242 (302)
T ss_dssp             TCCCCHHHHHHHHHHHHHTCTTCCCCCHHHHHHHHHHHTCEEEEEEE
T ss_pred             cccccccccchHHHHHHhcCCCCCCCCHHHHHHHHHhCCcEEEEEEe
Confidence                                     1234577788899999988855

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=99.51  E-value=7.4e-14  Score=132.58  Aligned_cols=120  Identities=19%  Similarity=0.209  Sum_probs=88.5

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEEEc
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTME  153 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~  153 (523)
                      +++.+|||||||+|.++..+++.  +.+|+|+|+|+.|++.|+++.  ...+++++++|+.++    ++++++||+|++.
T Consensus        52 ~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~--~~~~~~~~~~d~~~~----~~~~~~fD~v~~~  123 (242)
T 3l8d_A           52 KKEAEVLDVGCGDGYGTYKLSRT--GYKAVGVDISEVMIQKGKERG--EGPDLSFIKGDLSSL----PFENEQFEAIMAI  123 (242)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHTTT--CBTTEEEEECBTTBC----SSCTTCEEEEEEE
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhc--ccCCceEEEcchhcC----CCCCCCccEEEEc
Confidence            36789999999999999999988  668999999999999999875  236799999999977    6778999999991


Q ss_pred             ccc---ccc-eeeec-ceEEecCCeEEE-------------------------eeCHHHHHHHHHhCCCcEEEEEeEe
Q 009871          154 RLT---GKD-QKISE-NFYVRGDGTRAF-------------------------YFSNDFLTSLFKENGFDVEELGLCC  201 (523)
Q Consensus       154 ~~~---~~~-~~~~~-~~~~~~~g~~~~-------------------------~~~~~~l~~ll~~~Gf~~~~~~~~~  201 (523)
                      ..+   ... ..+.. .-.++++|.+++                         +++.+++.++++++||++++.....
T Consensus       124 ~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~  201 (242)
T 3l8d_A          124 NSLEWTEEPLRALNEIKRVLKSDGYACIAILGPTAKPRENSYPRLYGKDVVCNTMMPWEFEQLVKEQGFKVVDGIGVY  201 (242)
T ss_dssp             SCTTSSSCHHHHHHHHHHHEEEEEEEEEEEECTTCGGGGGGGGGGGTCCCSSCCCCHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             ChHhhccCHHHHHHHHHHHhCCCeEEEEEEcCCcchhhhhhhhhhccccccccCCCHHHHHHHHHHcCCEEEEeeccc
Confidence            100   000 00000 012344443332                         2688999999999999998776443

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=99.51  E-value=8.5e-14  Score=131.21  Aligned_cols=131  Identities=17%  Similarity=0.114  Sum_probs=100.4

Q ss_pred             CCCCeEEEECCC-ccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCC
Q 009871          334 VAGKKVLELGCG-CGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNE  412 (523)
Q Consensus       334 ~~~~~VLElG~G-~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~  412 (523)
                      .++.+|||+||| +|.++..++.....+|+++|+++.+++.+++|+..++.     ++.+...|+....      .+.++
T Consensus        54 ~~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-----~v~~~~~d~~~~~------~~~~~  122 (230)
T 3evz_A           54 RGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNS-----NVRLVKSNGGIIK------GVVEG  122 (230)
T ss_dssp             CSSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTTC-----CCEEEECSSCSST------TTCCS
T ss_pred             CCCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHhCC-----CcEEEeCCchhhh------hcccC
Confidence            478899999999 99888888877567899999999999999999999875     4566666653221      23357


Q ss_pred             CccEEEEccccCCCCC-------------------hHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhHHHHHH
Q 009871          413 GFEVILGTDVSYIPEA-------------------ILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAA  473 (523)
Q Consensus       413 ~fD~Ii~~d~~y~~~~-------------------~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~~~~~  473 (523)
                      +||+|+++...+....                   +..+++.+.++|         +|||.+++....+......+.+.+
T Consensus       123 ~fD~I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L---------kpgG~l~~~~~~~~~~~~~~~~~l  193 (230)
T 3evz_A          123 TFDVIFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHL---------NPGGKVALYLPDKEKLLNVIKERG  193 (230)
T ss_dssp             CEEEEEECCCCC---------------CCSSSCHHHHHHHHHHGGGE---------EEEEEEEEEEESCHHHHHHHHHHH
T ss_pred             ceeEEEECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHh---------CCCeEEEEEecccHhHHHHHHHHH
Confidence            8999998755543221                   477888899999         679999987765544456788899


Q ss_pred             HHcCCEEEEEc
Q 009871          474 TQCGFRLVDKW  484 (523)
Q Consensus       474 ~~~gf~~~~~~  484 (523)
                      ++.||.+..+.
T Consensus       194 ~~~g~~~~~~~  204 (230)
T 3evz_A          194 IKLGYSVKDIK  204 (230)
T ss_dssp             HHTTCEEEEEE
T ss_pred             HHcCCceEEEE
Confidence            99999988763

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=99.51  E-value=1.3e-13  Score=128.08  Aligned_cols=137  Identities=16%  Similarity=0.102  Sum_probs=97.4

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEEE-
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM-  152 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~-  152 (523)
                      .++.+|||||||+|.++..+++.  +.+|+|+|+|+.|++.|+++.     ++.+.++|+..+    + ++++||+|++ 
T Consensus        42 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~-----~~~~~~~d~~~~----~-~~~~fD~v~~~  109 (211)
T 3e23_A           42 PAGAKILELGCGAGYQAEAMLAA--GFDVDATDGSPELAAEASRRL-----GRPVRTMLFHQL----D-AIDAYDAVWAH  109 (211)
T ss_dssp             CTTCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHH-----TSCCEECCGGGC----C-CCSCEEEEEEC
T ss_pred             CCCCcEEEECCCCCHHHHHHHHc--CCeEEEECCCHHHHHHHHHhc-----CCceEEeeeccC----C-CCCcEEEEEec
Confidence            45789999999999999999988  568999999999999999875     467888999876    4 5789999999 


Q ss_pred             ------------------ccccccceeeecceE------EecCCeEEEeeCHHHHHHHHHhCC-CcEEEEEeEeeeeeec
Q 009871          153 ------------------ERLTGKDQKISENFY------VRGDGTRAFYFSNDFLTSLFKENG-FDVEELGLCCKQVENR  207 (523)
Q Consensus       153 ------------------~~~~~~~~~~~~~~~------~~~~g~~~~~~~~~~l~~ll~~~G-f~~~~~~~~~~~~~~~  207 (523)
                                        .+.+++++.+.-...      ....+....+++.+++.++++++| |+++.+.........+
T Consensus       110 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~f~~~~~~~~~~~~~~~  189 (211)
T 3e23_A          110 ACLLHVPRDELADVLKLIWRALKPGGLFYASYKSGEGEGRDKLARYYNYPSEEWLRARYAEAGTWASVAVESSEGKGFDQ  189 (211)
T ss_dssp             SCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCSSCEECTTSCEECCCCHHHHHHHHHHHCCCSEEEEEEEEEECTTS
T ss_pred             CchhhcCHHHHHHHHHHHHHhcCCCcEEEEEEcCCCcccccccchhccCCCHHHHHHHHHhCCCcEEEEEEeccCCCCCC
Confidence                              122233333221100      001122334579999999999999 9998876554332221


Q ss_pred             ccCccceeEEEEEEEEecCC
Q 009871          208 ARELVMNRRWVQAVFCSSGG  227 (523)
Q Consensus       208 ~~~~~~~r~~~~~~~~~~~~  227 (523)
                           -...|+.....++..
T Consensus       190 -----~~~~wl~~~~~~~~~  204 (211)
T 3e23_A          190 -----ELAQFLHVSVRKPEL  204 (211)
T ss_dssp             -----CEEEEEEEEEECCCC
T ss_pred             -----CCceEEEEEEecCcc
Confidence                 136788777777654

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=99.51  E-value=1.9e-13  Score=131.36  Aligned_cols=131  Identities=15%  Similarity=0.100  Sum_probs=104.0

Q ss_pred             CCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCC
Q 009871          334 VAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG  413 (523)
Q Consensus       334 ~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~  413 (523)
                      .++.+|||||||+|.++..++..++ +|+++|+|+.|++.+++++..++..    ++.+...|..+.       ++++++
T Consensus        36 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~----~v~~~~~d~~~l-------~~~~~~  103 (260)
T 1vl5_A           36 KGNEEVLDVATGGGHVANAFAPFVK-KVVAFDLTEDILKVARAFIEGNGHQ----QVEYVQGDAEQM-------PFTDER  103 (260)
T ss_dssp             CSCCEEEEETCTTCHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHTTCC----SEEEEECCC-CC-------CSCTTC
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHhcCCC----ceEEEEecHHhC-------CCCCCC
Confidence            4678999999999988888888764 8999999999999999999887653    466666555432       234579


Q ss_pred             ccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec-----------------------CCChhHHH
Q 009871          414 FEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFR-----------------------QVDEPSML  470 (523)
Q Consensus       414 fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r-----------------------~~~~~~~~  470 (523)
                      ||+|+++.++++..+...+++.+.++|         +|||.+++.....                       ..+...+.
T Consensus       104 fD~V~~~~~l~~~~d~~~~l~~~~r~L---------kpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (260)
T 1vl5_A          104 FHIVTCRIAAHHFPNPASFVSEAYRVL---------KKGGQLLLVDNSAPENDAFDVFYNYVEKERDYSHHRAWKKSDWL  174 (260)
T ss_dssp             EEEEEEESCGGGCSCHHHHHHHHHHHE---------EEEEEEEEEEEEBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHH
T ss_pred             EEEEEEhhhhHhcCCHHHHHHHHHHHc---------CCCCEEEEEEcCCCCCHHHHHHHHHHHHhcCccccCCCCHHHHH
Confidence            999999999999999999999999999         6799998864331                       12335677


Q ss_pred             HHHHHcCCEEEEEcC
Q 009871          471 SAATQCGFRLVDKWP  485 (523)
Q Consensus       471 ~~~~~~gf~~~~~~~  485 (523)
                      +.+++.||++..+..
T Consensus       175 ~~l~~aGf~~~~~~~  189 (260)
T 1vl5_A          175 KMLEEAGFELEELHC  189 (260)
T ss_dssp             HHHHHHTCEEEEEEE
T ss_pred             HHHHHCCCeEEEEEE
Confidence            888899999877643

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=99.51  E-value=1.8e-14  Score=133.32  Aligned_cols=122  Identities=14%  Similarity=0.092  Sum_probs=85.8

Q ss_pred             cCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhcccc-------------CCCcEEEEEeeccCCcc
Q 009871           72 SGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDF-------------TETRVSTFVCDLISDDL  138 (523)
Q Consensus        72 ~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~-------------~~~~v~~~~~d~~~~~~  138 (523)
                      ...++.+|||+|||+|..+..|+++  +++|+|||+|+.||+.|+++...             ...+++++++|+.++  
T Consensus        19 ~~~~~~~vLD~GCG~G~~~~~la~~--g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l--   94 (203)
T 1pjz_A           19 NVVPGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFAL--   94 (203)
T ss_dssp             CCCTTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSS--
T ss_pred             ccCCCCEEEEeCCCCcHhHHHHHHC--CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccC--
Confidence            3357789999999999999999998  56899999999999999987532             236799999999977  


Q ss_pred             CCCCCC-CceeEEEE-------------------ccccccceeeecceEEec---CCeEEEeeCHHHHHHHHHhCCCcEE
Q 009871          139 SRQISP-SSIDIVTM-------------------ERLTGKDQKISENFYVRG---DGTRAFYFSNDFLTSLFKENGFDVE  195 (523)
Q Consensus       139 ~~~~~~-~~fD~V~~-------------------~~~~~~~~~~~~~~~~~~---~g~~~~~~~~~~l~~ll~~~Gf~~~  195 (523)
                        ++++ ++||+|++                   .+.+++++.+.-.....+   .+...+.++.+++.+++.+ ||++.
T Consensus        95 --~~~~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~~~~~~~~~~~~~~~~~~~~el~~~~~~-gf~i~  171 (203)
T 1pjz_A           95 --TARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYDQALLEGPPFSVPQTWLHRVMSG-NWEVT  171 (203)
T ss_dssp             --THHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCSSSSSSCCCCCCHHHHHHTSCS-SEEEE
T ss_pred             --CcccCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCccccCCCCCCCCHHHHHHHhcC-CcEEE
Confidence              4544 78999997                   222344443110000000   0011123588999999988 99876


Q ss_pred             EEEeE
Q 009871          196 ELGLC  200 (523)
Q Consensus       196 ~~~~~  200 (523)
                      .+...
T Consensus       172 ~~~~~  176 (203)
T 1pjz_A          172 KVGGQ  176 (203)
T ss_dssp             EEEES
T ss_pred             Eeccc
Confidence            66543

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=99.51  E-value=6.7e-14  Score=130.80  Aligned_cols=126  Identities=18%  Similarity=0.134  Sum_probs=93.3

Q ss_pred             hhcCCCCCeEEEECCCccccHHHHHhhC-CCCEEEEEeCCHHHHHHHHhccccC-CCcEEEEEeeccCCccCCCCCCCce
Q 009871           70 YFSGAGRKDVLEVGCGAGNTIFPLIAAY-PDVFVYACDFSPRAVNLVMTHKDFT-ETRVSTFVCDLISDDLSRQISPSSI  147 (523)
Q Consensus        70 ~~~~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~v~gvD~S~~~l~~a~~~~~~~-~~~v~~~~~d~~~~~~~~~~~~~~f  147 (523)
                      .+...++.+|||+|||+|.++..+++.+ |..+|+|+|+|+.|++.|+++.... ..++++.++|+.++    ++++++|
T Consensus        32 ~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~----~~~~~~f  107 (219)
T 3dh0_A           32 EFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKI----PLPDNTV  107 (219)
T ss_dssp             HHTCCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBC----SSCSSCE
T ss_pred             HhCCCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccC----CCCCCCe
Confidence            3444678899999999999999999985 7789999999999999999976432 24799999999877    5678899


Q ss_pred             eEEEEccc---ccc-ceeeec-ceEEecCCeEEE----------------eeCHHHHHHHHHhCCCcEEEEEe
Q 009871          148 DIVTMERL---TGK-DQKISE-NFYVRGDGTRAF----------------YFSNDFLTSLFKENGFDVEELGL  199 (523)
Q Consensus       148 D~V~~~~~---~~~-~~~~~~-~~~~~~~g~~~~----------------~~~~~~l~~ll~~~Gf~~~~~~~  199 (523)
                      |+|++...   ... ...+.. ...++++|.+++                +++.+++.++++++||++++...
T Consensus       108 D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~  180 (219)
T 3dh0_A          108 DFIFMAFTFHELSEPLKFLEELKRVAKPFAYLAIIDWKKEERDKGPPPEEVYSEWEVGLILEDAGIRVGRVVE  180 (219)
T ss_dssp             EEEEEESCGGGCSSHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSCCGGGSCCHHHHHHHHHHTTCEEEEEEE
T ss_pred             eEEEeehhhhhcCCHHHHHHHHHHHhCCCeEEEEEEecccccccCCchhcccCHHHHHHHHHHCCCEEEEEEe
Confidence            99999111   000 000000 113555555543                34789999999999999887654

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=99.51  E-value=4.9e-14  Score=135.74  Aligned_cols=68  Identities=16%  Similarity=0.233  Sum_probs=59.5

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM  152 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~  152 (523)
                      +++.+|||||||+|.++..+++.+  .+|+|+|+|+.|++.|+++.    .+++++++|+.++    ++ +++||+|++
T Consensus        49 ~~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~~~~a~~~~----~~~~~~~~d~~~~----~~-~~~fD~v~~  116 (263)
T 3pfg_A           49 PKAASLLDVACGTGMHLRHLADSF--GTVEGLELSADMLAIARRRN----PDAVLHHGDMRDF----SL-GRRFSAVTC  116 (263)
T ss_dssp             TTCCEEEEETCTTSHHHHHHTTTS--SEEEEEESCHHHHHHHHHHC----TTSEEEECCTTTC----CC-SCCEEEEEE
T ss_pred             CCCCcEEEeCCcCCHHHHHHHHcC--CeEEEEECCHHHHHHHHhhC----CCCEEEECChHHC----Cc-cCCcCEEEE
Confidence            356899999999999999999884  57999999999999999875    3689999999876    44 679999998

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=99.50  E-value=2.4e-13  Score=130.90  Aligned_cols=128  Identities=12%  Similarity=0.151  Sum_probs=93.1

Q ss_pred             HHHhhhhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCC
Q 009871           65 KEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISP  144 (523)
Q Consensus        65 ~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  144 (523)
                      ..+.+.+...++.+|||||||+|..+..+++.+ +++|+|+|+|+.|++.|+++.... .+++++++|+.++    ++++
T Consensus        45 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~-~~~~~~~~d~~~~----~~~~  118 (266)
T 3ujc_A           45 KKILSDIELNENSKVLDIGSGLGGGCMYINEKY-GAHTHGIDICSNIVNMANERVSGN-NKIIFEANDILTK----EFPE  118 (266)
T ss_dssp             HHHTTTCCCCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHTCCSC-TTEEEEECCTTTC----CCCT
T ss_pred             HHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEECccccC----CCCC
Confidence            333444555678899999999999999999986 678999999999999999987544 7899999999987    6778


Q ss_pred             CceeEEEEccccccc------eeeec-ceEEecCCeEEE-------------------------eeCHHHHHHHHHhCCC
Q 009871          145 SSIDIVTMERLTGKD------QKISE-NFYVRGDGTRAF-------------------------YFSNDFLTSLFKENGF  192 (523)
Q Consensus       145 ~~fD~V~~~~~~~~~------~~~~~-~~~~~~~g~~~~-------------------------~~~~~~l~~ll~~~Gf  192 (523)
                      ++||+|++...+...      ..+.. ...++++|.+++                         +++.+++.++++++||
T Consensus       119 ~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf  198 (266)
T 3ujc_A          119 NNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCATEKENWDDEFKEYVKQRKYTLITVEEYADILTACNF  198 (266)
T ss_dssp             TCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEESCGGGCCHHHHHHHHHHTCCCCCHHHHHHHHHHTTC
T ss_pred             CcEEEEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEeccCCcccchHHHHHHHhcCCCCCCCHHHHHHHHHHcCC
Confidence            999999991100000      00000 012344443322                         3578999999999999


Q ss_pred             cEEEEE
Q 009871          193 DVEELG  198 (523)
Q Consensus       193 ~~~~~~  198 (523)
                      +++.+.
T Consensus       199 ~~~~~~  204 (266)
T 3ujc_A          199 KNVVSK  204 (266)
T ss_dssp             EEEEEE
T ss_pred             eEEEEE
Confidence            987664

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=99.50  E-value=3.2e-13  Score=131.67  Aligned_cols=142  Identities=15%  Similarity=0.074  Sum_probs=110.7

Q ss_pred             HHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCc
Q 009871          323 MAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDH  402 (523)
Q Consensus       323 la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~  402 (523)
                      +.+++...+  .++.+|||||||+|.++..++..+ .+|+++|+++.+++.+++++..++..   .++.+...|+.+.. 
T Consensus        58 l~~~l~~~~--~~~~~vLDiGcG~G~~~~~l~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~---~~v~~~~~d~~~~~-  130 (285)
T 4htf_A           58 LDRVLAEMG--PQKLRVLDAGGGEGQTAIKMAERG-HQVILCDLSAQMIDRAKQAAEAKGVS---DNMQFIHCAAQDVA-  130 (285)
T ss_dssp             HHHHHHHTC--SSCCEEEEETCTTCHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHC-CCG---GGEEEEESCGGGTG-
T ss_pred             HHHHHHhcC--CCCCEEEEeCCcchHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcCCC---cceEEEEcCHHHhh-
Confidence            334444433  246799999999998888888874 58999999999999999999887664   46777766664431 


Q ss_pred             chhhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee---------------------
Q 009871          403 IEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIF---------------------  461 (523)
Q Consensus       403 ~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~---------------------  461 (523)
                           .+.+++||+|++..++++......+++.+.++|         +|||.+++....                     
T Consensus       131 -----~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L---------kpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (285)
T 4htf_A          131 -----SHLETPVDLILFHAVLEWVADPRSVLQTLWSVL---------RPGGVLSLMFYNAHGLLMHNMVAGNFDYVQAGM  196 (285)
T ss_dssp             -----GGCSSCEEEEEEESCGGGCSCHHHHHHHHHHTE---------EEEEEEEEEEEBHHHHHHHHHHTTCHHHHHTTC
T ss_pred             -----hhcCCCceEEEECchhhcccCHHHHHHHHHHHc---------CCCeEEEEEEeCCchHHHHHHHhcCHHHHhhhc
Confidence                 234679999999999999999999999999999         679999987642                     


Q ss_pred             -----------cCCChhHHHHHHHHcCCEEEEEcC
Q 009871          462 -----------RQVDEPSMLSAATQCGFRLVDKWP  485 (523)
Q Consensus       462 -----------r~~~~~~~~~~~~~~gf~~~~~~~  485 (523)
                                 +..+..++.+.++++||++.++..
T Consensus       197 ~~~~~~~~~~~~~~~~~~l~~~l~~aGf~v~~~~~  231 (285)
T 4htf_A          197 PKKKKRTLSPDYPRDPTQVYLWLEEAGWQIMGKTG  231 (285)
T ss_dssp             CCC----CCCSCCBCHHHHHHHHHHTTCEEEEEEE
T ss_pred             cccccccCCCCCCCCHHHHHHHHHHCCCceeeeee
Confidence                       122346788889999999987754

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=99.50  E-value=7.5e-14  Score=137.18  Aligned_cols=76  Identities=17%  Similarity=0.186  Sum_probs=63.3

Q ss_pred             hhhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCC----CcEEEEEeeccCCccCCCCCC
Q 009871           69 RYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE----TRVSTFVCDLISDDLSRQISP  144 (523)
Q Consensus        69 ~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~----~~v~~~~~d~~~~~~~~~~~~  144 (523)
                      +.+. ..+.+|||||||+|.++..+++.  +.+|+|+|+|+.|++.|+++....+    .+++++++|+.++    ++ +
T Consensus        77 ~~~~-~~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~----~~-~  148 (299)
T 3g2m_A           77 TRTG-PVSGPVLELAAGMGRLTFPFLDL--GWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAF----AL-D  148 (299)
T ss_dssp             HHHC-CCCSCEEEETCTTTTTHHHHHTT--TCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBC----CC-S
T ss_pred             HhhC-CCCCcEEEEeccCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcC----Cc-C
Confidence            3444 34459999999999999999988  5679999999999999999875544    6799999999976    44 6


Q ss_pred             CceeEEEE
Q 009871          145 SSIDIVTM  152 (523)
Q Consensus       145 ~~fD~V~~  152 (523)
                      ++||+|++
T Consensus       149 ~~fD~v~~  156 (299)
T 3g2m_A          149 KRFGTVVI  156 (299)
T ss_dssp             CCEEEEEE
T ss_pred             CCcCEEEE
Confidence            78999986

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=99.49  E-value=2e-13  Score=127.60  Aligned_cols=134  Identities=16%  Similarity=0.196  Sum_probs=100.0

Q ss_pred             CCCCeEEEECCCccHHHHHHHhcCC-CEEEEEcCChHHHHHHHHHHHhcCCCC-CCCceEEEeeecCCCCcchhhhhhcC
Q 009871          334 VAGKKVLELGCGCGGICSMVAAGSA-DLVVATDGDSIALDLLAQNVTANLKPP-FLAKLITKRLEWGNRDHIEAIKEENN  411 (523)
Q Consensus       334 ~~~~~VLElG~G~G~l~~~~a~~~~-~~V~~~D~~~~~l~~~~~n~~~n~~~~-~~~~v~~~~ldw~~~~~~~~~~~~~~  411 (523)
                      .++.+|||||||+|.++..++..++ .+|+++|+|+.+++.+++++..++... ...++.+...|+...       +...
T Consensus        28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~-------~~~~  100 (219)
T 3jwg_A           28 VNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYR-------DKRF  100 (219)
T ss_dssp             TTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSC-------CGGG
T ss_pred             cCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCccccc-------cccc
Confidence            4678999999999998888888765 699999999999999999988776531 011577776666332       1234


Q ss_pred             CCccEEEEccccCCCC--ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecC--------------------CChhHH
Q 009871          412 EGFEVILGTDVSYIPE--AILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ--------------------VDEPSM  469 (523)
Q Consensus       412 ~~fD~Ii~~d~~y~~~--~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~--------------------~~~~~~  469 (523)
                      ++||+|++++++++..  ....+++.+.++|         +|||.++.+.....                    .+..++
T Consensus       101 ~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~L---------kpgG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  171 (219)
T 3jwg_A          101 SGYDAATVIEVIEHLDENRLQAFEKVLFEFT---------RPQTVIVSTPNKEYNFHYGNLFEGNLRHRDHRFEWTRKEF  171 (219)
T ss_dssp             TTCSEEEEESCGGGCCHHHHHHHHHHHHTTT---------CCSEEEEEEEBGGGGGCCCCT-----GGGCCTTSBCHHHH
T ss_pred             CCCCEEEEHHHHHhCCHHHHHHHHHHHHHhh---------CCCEEEEEccchhhhhhhcccCcccccccCceeeecHHHH
Confidence            6899999999998876  3478999999999         67886665543311                    133445


Q ss_pred             H----HHHHHcCCEEEEE
Q 009871          470 L----SAATQCGFRLVDK  483 (523)
Q Consensus       470 ~----~~~~~~gf~~~~~  483 (523)
                      .    ..++++||++...
T Consensus       172 ~~~~~~l~~~~Gf~v~~~  189 (219)
T 3jwg_A          172 QTWAVKVAEKYGYSVRFL  189 (219)
T ss_dssp             HHHHHHHHHHHTEEEEEE
T ss_pred             HHHHHHHHHHCCcEEEEE
Confidence            5    6778899998766

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=99.49  E-value=4.5e-13  Score=129.93  Aligned_cols=146  Identities=16%  Similarity=0.152  Sum_probs=114.8

Q ss_pred             HHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcC-CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecC
Q 009871          320 AHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWG  398 (523)
Q Consensus       320 a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~  398 (523)
                      ...+.+++.......++.+|||||||+|.++..++..+ ..+|+++|+++.+++.+++++..++..    ++.+...|..
T Consensus        22 ~~~l~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~----~~~~~~~d~~   97 (276)
T 3mgg_A           22 AETLEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIK----NVKFLQANIF   97 (276)
T ss_dssp             -CHHHHHHHTTCCCCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCC----SEEEEECCGG
T ss_pred             HHHHHHHHhhcccCCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC----CcEEEEcccc
Confidence            44567777776666788999999999999888888875 469999999999999999999987763    4666665554


Q ss_pred             CCCcchhhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec----------------
Q 009871          399 NRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFR----------------  462 (523)
Q Consensus       399 ~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r----------------  462 (523)
                      +.       ++++++||+|+++.++++......+++.+.++|         +|||.+++.....                
T Consensus        98 ~~-------~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L---------~pgG~l~~~~~~~~~~~~~~~~~~~~~~~  161 (276)
T 3mgg_A           98 SL-------PFEDSSFDHIFVCFVLEHLQSPEEALKSLKKVL---------KPGGTITVIEGDHGSCYFHPEGKKAIEAW  161 (276)
T ss_dssp             GC-------CSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHE---------EEEEEEEEEEECGGGCEEESCCHHHHHHH
T ss_pred             cC-------CCCCCCeeEEEEechhhhcCCHHHHHHHHHHHc---------CCCcEEEEEEcCCCCceECCCcHHHHHHH
Confidence            32       234579999999999999999999999999999         6799998865321                


Q ss_pred             -------------CCChhHHHHHHHHcCCEEEEEcC
Q 009871          463 -------------QVDEPSMLSAATQCGFRLVDKWP  485 (523)
Q Consensus       463 -------------~~~~~~~~~~~~~~gf~~~~~~~  485 (523)
                                   ......+...++++||++.++..
T Consensus       162 ~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~v~~~~  197 (276)
T 3mgg_A          162 NCLIRVQAYMKGNSLVGRQIYPLLQESGFEKIRVEP  197 (276)
T ss_dssp             HHHHHHHHHTTCCTTGGGGHHHHHHHTTCEEEEEEE
T ss_pred             HHHHHHHHhcCCCcchHHHHHHHHHHCCCCeEEEee
Confidence                         01124567788999999887753

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=99.49  E-value=1.4e-13  Score=129.93  Aligned_cols=135  Identities=15%  Similarity=0.110  Sum_probs=106.1

Q ss_pred             CCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCC-CCceEEEeeecCCCCcchhhhhhcCCC
Q 009871          335 AGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPF-LAKLITKRLEWGNRDHIEAIKEENNEG  413 (523)
Q Consensus       335 ~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~-~~~v~~~~ldw~~~~~~~~~~~~~~~~  413 (523)
                      ++.+|||+|||+|.++..++..+ .+|+++|+++.+++.+++++..++.... ..++.+...+..+.       ++..++
T Consensus        30 ~~~~vLdiG~G~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~-------~~~~~~  101 (235)
T 3sm3_A           30 EDDEILDIGCGSGKISLELASKG-YSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSL-------SFHDSS  101 (235)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSC-------CSCTTC
T ss_pred             CCCeEEEECCCCCHHHHHHHhCC-CeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEeccccc-------CCCCCc
Confidence            67899999999998888888884 4899999999999999999887665321 13456665555432       234578


Q ss_pred             ccEEEEccccCCCCChH---HHHHHHHHHhhccCCCCCCCCCcEEEEEEee-----------------------------
Q 009871          414 FEVILGTDVSYIPEAIL---PLFATAKELTASSNKSLREDQQPAFILCHIF-----------------------------  461 (523)
Q Consensus       414 fD~Ii~~d~~y~~~~~~---~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~-----------------------------  461 (523)
                      ||+|+++.++++.....   .+++.+.++|         +|||.++++...                             
T Consensus       102 ~D~v~~~~~l~~~~~~~~~~~~l~~~~~~L---------~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (235)
T 3sm3_A          102 FDFAVMQAFLTSVPDPKERSRIIKEVFRVL---------KPGAYLYLVEFGQNWHLKLYRKRYLHDFPITKEEGSFLARD  172 (235)
T ss_dssp             EEEEEEESCGGGCCCHHHHHHHHHHHHHHE---------EEEEEEEEEEEBCCTTSHHHHHHHHHHHHHHCSTTEEEEEC
T ss_pred             eeEEEEcchhhcCCCHHHHHHHHHHHHHHc---------CCCeEEEEEECCcchhHHHHHHHhhhhccchhhhcceEecc
Confidence            99999999999887777   8999999999         679999887442                             


Q ss_pred             ----------cCCChhHHHHHHHHcCCEEEEEcCC
Q 009871          462 ----------RQVDEPSMLSAATQCGFRLVDKWPS  486 (523)
Q Consensus       462 ----------r~~~~~~~~~~~~~~gf~~~~~~~~  486 (523)
                                +..+.+++.+.++++||++..+...
T Consensus       173 ~~~~~~~~~~~~~~~~~l~~ll~~aGf~~~~~~~~  207 (235)
T 3sm3_A          173 PETGETEFIAHHFTEKELVFLLTDCRFEIDYFRVK  207 (235)
T ss_dssp             TTTCCEEEEEECBCHHHHHHHHHTTTEEEEEEEEE
T ss_pred             cccCCcceeeEeCCHHHHHHHHHHcCCEEEEEEec
Confidence                      2345677889999999999988654

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=99.49  E-value=1.9e-13  Score=131.90  Aligned_cols=121  Identities=16%  Similarity=0.205  Sum_probs=88.2

Q ss_pred             CCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC--CCcEEEEEeeccCCccCCCCCCCceeEE
Q 009871           73 GAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISDDLSRQISPSSIDIV  150 (523)
Q Consensus        73 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~~~~~~~~~~fD~V  150 (523)
                      ..++.+|||||||+|..+..+++. ++++|+|+|+|+.|++.|+++....  ..+++++++|+.++    ++++++||+|
T Consensus        44 ~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~~~~~~fD~i  118 (267)
T 3kkz_A           44 LTEKSLIADIGCGTGGQTMVLAGH-VTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDL----PFRNEELDLI  118 (267)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHTT-CSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSC----CCCTTCEEEE
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhC----CCCCCCEEEE
Confidence            467889999999999999999988 5679999999999999999976433  25699999999877    6678899999


Q ss_pred             EEcccc---ccceeeec-ceEEecCCeEEE------------------------eeCHHHHHHHHHhCCCcEEEEE
Q 009871          151 TMERLT---GKDQKISE-NFYVRGDGTRAF------------------------YFSNDFLTSLFKENGFDVEELG  198 (523)
Q Consensus       151 ~~~~~~---~~~~~~~~-~~~~~~~g~~~~------------------------~~~~~~l~~ll~~~Gf~~~~~~  198 (523)
                      ++...+   .....+.. ...++++|.+++                        +++.+++.++++++||+++.+.
T Consensus       119 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~  194 (267)
T 3kkz_A          119 WSEGAIYNIGFERGLNEWRKYLKKGGYLAVSECSWFTDERPAEINDFWMDAYPEIDTIPNQVAKIHKAGYLPVATF  194 (267)
T ss_dssp             EESSCGGGTCHHHHHHHHGGGEEEEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCEEHHHHHHHHHHTTEEEEEEE
T ss_pred             EEcCCceecCHHHHHHHHHHHcCCCCEEEEEEeeecCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHCCCEEEEEE
Confidence            991100   00000000 013344444332                        2378899999999999987663

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=99.49  E-value=1.4e-13  Score=130.73  Aligned_cols=131  Identities=13%  Similarity=-0.006  Sum_probs=102.8

Q ss_pred             CCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCc
Q 009871          335 AGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGF  414 (523)
Q Consensus       335 ~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~f  414 (523)
                      ++.+|||||||+|.++..+++.+..+|+++|+++.+++.+++++..++.    .++.+...|+.+.       +...++|
T Consensus        79 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~----~~~~~~~~d~~~~-------~~~~~~f  147 (241)
T 2ex4_A           79 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGK----RVRNYFCCGLQDF-------TPEPDSY  147 (241)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGG----GEEEEEECCGGGC-------CCCSSCE
T ss_pred             CCCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHhhhcCC----ceEEEEEcChhhc-------CCCCCCE
Confidence            5789999999999888888887767999999999999999998876531    3466666555432       1234589


Q ss_pred             cEEEEccccCCCCC--hHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecC-------------CChhHHHHHHHHcCCE
Q 009871          415 EVILGTDVSYIPEA--ILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ-------------VDEPSMLSAATQCGFR  479 (523)
Q Consensus       415 D~Ii~~d~~y~~~~--~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~-------------~~~~~~~~~~~~~gf~  479 (523)
                      |+|++..++++...  ...+++.+.++|         +|||.++++.....             .+...+.+.++++||+
T Consensus       148 D~v~~~~~l~~~~~~~~~~~l~~~~~~L---------kpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~  218 (241)
T 2ex4_A          148 DVIWIQWVIGHLTDQHLAEFLRRCKGSL---------RPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLS  218 (241)
T ss_dssp             EEEEEESCGGGSCHHHHHHHHHHHHHHE---------EEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCC
T ss_pred             EEEEEcchhhhCCHHHHHHHHHHHHHhc---------CCCeEEEEEEccCCCcceecccCCcccCCHHHHHHHHHHcCCe
Confidence            99999999888765  558999999999         67999998654321             1456788999999999


Q ss_pred             EEEEcC
Q 009871          480 LVDKWP  485 (523)
Q Consensus       480 ~~~~~~  485 (523)
                      +.+...
T Consensus       219 ~~~~~~  224 (241)
T 2ex4_A          219 LLAEER  224 (241)
T ss_dssp             EEEEEE
T ss_pred             EEEeee
Confidence            988865

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=99.48  E-value=2.1e-13  Score=131.23  Aligned_cols=160  Identities=11%  Similarity=0.199  Sum_probs=103.6

Q ss_pred             hhHHHHHHHHhcccccccch--hhhHHHHhhhh--cCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHH
Q 009871           41 AKKYWDLFYKRHQDRFFKDR--HYLDKEWGRYF--SGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVM  116 (523)
Q Consensus        41 ~~~~Wd~~y~~~~~~f~~~~--~~l~~~~~~~~--~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~  116 (523)
                      ...||+.||..+...+..++  .+..+.+..++  +..++.+|||||||+|.++..+++.++ .+|+|+|+|+.|++.|+
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~   96 (265)
T 2i62_A           18 PRDYLEKYYSFGSRHCAENEILRHLLKNLFKIFCLGAVKGELLIDIGSGPTIYQLLSACESF-TEIIVSDYTDQNLWELQ   96 (265)
T ss_dssp             HHHHHHHHHCCCSSCHHHHHHHHHHHHHHHHHHHSSSCCEEEEEEESCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHH
T ss_pred             HHHHHHHHhCcCCcchhHHHHHHhhHHHHHHHhcccccCCCEEEEECCCccHHHHHHhhccc-CeEEEecCCHHHHHHHH
Confidence            45799999987654443211  11222222333  224568999999999999999888754 47999999999999999


Q ss_pred             hccccCCC------------------------------cE-EEEEeeccCCccCCCCCCCceeEEEE-------------
Q 009871          117 THKDFTET------------------------------RV-STFVCDLISDDLSRQISPSSIDIVTM-------------  152 (523)
Q Consensus       117 ~~~~~~~~------------------------------~v-~~~~~d~~~~~~~~~~~~~~fD~V~~-------------  152 (523)
                      ++......                              ++ .+.++|+.+.....+...++||+|++             
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~  176 (265)
T 2i62_A           97 KWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLRRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPA  176 (265)
T ss_dssp             HHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHH
T ss_pred             HHHhcCCccccchhhhhhhhcccccccchHHHHHHhhhhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHH
Confidence            87643211                              27 89999998753211122389999999             


Q ss_pred             --------ccccccceeeec------ceEEecCCe-EEEeeCHHHHHHHHHhCCCcEEEEEeEe
Q 009871          153 --------ERLTGKDQKISE------NFYVRGDGT-RAFYFSNDFLTSLFKENGFDVEELGLCC  201 (523)
Q Consensus       153 --------~~~~~~~~~~~~------~~~~~~~g~-~~~~~~~~~l~~ll~~~Gf~~~~~~~~~  201 (523)
                              .+++++++.+.-      .++..+++. ..+.++.+++.++|+++||.++.+....
T Consensus       177 ~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~  240 (265)
T 2i62_A          177 YRTALRNLGSLLKPGGFLVMVDALKSSYYMIGEQKFSSLPLGWETVRDAVEEAGYTIEQFEVIS  240 (265)
T ss_dssp             HHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEECCCCCHHHHHHHHHHTTCEEEEEEEEC
T ss_pred             HHHHHHHHHhhCCCCcEEEEEecCCCceEEcCCccccccccCHHHHHHHHHHCCCEEEEEEEec
Confidence                    223344443321      112222222 1224588999999999999998877654

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.48  E-value=1.5e-13  Score=126.90  Aligned_cols=116  Identities=16%  Similarity=0.121  Sum_probs=86.1

Q ss_pred             CCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEEE---
Q 009871           76 RKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM---  152 (523)
Q Consensus        76 ~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~---  152 (523)
                      +.+|||||||+|.++..+++.  +.+|+|+|+|+.|++.|+++.    .+++++++|+.++    ++++++||+|++   
T Consensus        42 ~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~----~~~~~~~~d~~~~----~~~~~~fD~v~~~~~  111 (203)
T 3h2b_A           42 DGVILDVGSGTGRWTGHLASL--GHQIEGLEPATRLVELARQTH----PSVTFHHGTITDL----SDSPKRWAGLLAWYS  111 (203)
T ss_dssp             CSCEEEETCTTCHHHHHHHHT--TCCEEEECCCHHHHHHHHHHC----TTSEEECCCGGGG----GGSCCCEEEEEEESS
T ss_pred             CCeEEEecCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHhC----CCCeEEeCccccc----ccCCCCeEEEEehhh
Confidence            789999999999999999988  557999999999999999874    4689999999876    567899999999   


Q ss_pred             ----------------ccccccceeeecceEEecC-------CeEEEeeCHHHHHHHHHhCCCcEEEEEeEe
Q 009871          153 ----------------ERLTGKDQKISENFYVRGD-------GTRAFYFSNDFLTSLFKENGFDVEELGLCC  201 (523)
Q Consensus       153 ----------------~~~~~~~~~~~~~~~~~~~-------g~~~~~~~~~~l~~ll~~~Gf~~~~~~~~~  201 (523)
                                      .+.+++++.+.-.......       ....++++.+++.++|+++||+++.+....
T Consensus       112 l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~  183 (203)
T 3h2b_A          112 LIHMGPGELPDALVALRMAVEDGGGLLMSFFSGPSLEPMYHPVATAYRWPLPELAQALETAGFQVTSSHWDP  183 (203)
T ss_dssp             STTCCTTTHHHHHHHHHHTEEEEEEEEEEEECCSSCEEECCSSSCEEECCHHHHHHHHHHTTEEEEEEEECT
T ss_pred             HhcCCHHHHHHHHHHHHHHcCCCcEEEEEEccCCchhhhhchhhhhccCCHHHHHHHHHHCCCcEEEEEecC
Confidence                            1222333322211000000       111235689999999999999998876543

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=99.48  E-value=1.3e-13  Score=132.05  Aligned_cols=145  Identities=21%  Similarity=0.183  Sum_probs=109.2

Q ss_pred             cccccchhHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceE
Q 009871          312 TGLMLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLI  391 (523)
Q Consensus       312 ~G~~~W~~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~  391 (523)
                      .|.-.++++..+.+++....  .++.+|||+|||+|.++..+++.++ +|+++|+++.+++.+++|+..|+..     +.
T Consensus        99 fgtg~~~tt~~~~~~l~~~~--~~~~~VLDiGcG~G~l~~~la~~g~-~v~gvDi~~~~v~~a~~n~~~~~~~-----v~  170 (254)
T 2nxc_A           99 FGTGHHETTRLALKALARHL--RPGDKVLDLGTGSGVLAIAAEKLGG-KALGVDIDPMVLPQAEANAKRNGVR-----PR  170 (254)
T ss_dssp             ---CCSHHHHHHHHHHHHHC--CTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCGGGHHHHHHHHHHTTCC-----CE
T ss_pred             ccCCCCHHHHHHHHHHHHhc--CCCCEEEEecCCCcHHHHHHHHhCC-eEEEEECCHHHHHHHHHHHHHcCCc-----EE
Confidence            34445677777777776542  4788999999999988888888777 9999999999999999999998763     45


Q ss_pred             EEeeecCCCCcchhhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhHHHH
Q 009871          392 TKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLS  471 (523)
Q Consensus       392 ~~~ldw~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~~~  471 (523)
                      +...++.+        .++.++||+|+++-+.   +.+..+++.+.++|         +|||.++++.... ...+.+.+
T Consensus       171 ~~~~d~~~--------~~~~~~fD~Vv~n~~~---~~~~~~l~~~~~~L---------kpgG~lils~~~~-~~~~~v~~  229 (254)
T 2nxc_A          171 FLEGSLEA--------ALPFGPFDLLVANLYA---ELHAALAPRYREAL---------VPGGRALLTGILK-DRAPLVRE  229 (254)
T ss_dssp             EEESCHHH--------HGGGCCEEEEEEECCH---HHHHHHHHHHHHHE---------EEEEEEEEEEEEG-GGHHHHHH
T ss_pred             EEECChhh--------cCcCCCCCEEEECCcH---HHHHHHHHHHHHHc---------CCCCEEEEEeecc-CCHHHHHH
Confidence            54433321        1234689999987322   34678899999999         6799999976653 34567888


Q ss_pred             HHHHcCCEEEEEcC
Q 009871          472 AATQCGFRLVDKWP  485 (523)
Q Consensus       472 ~~~~~gf~~~~~~~  485 (523)
                      .+++.||++.++..
T Consensus       230 ~l~~~Gf~~~~~~~  243 (254)
T 2nxc_A          230 AMAGAGFRPLEEAA  243 (254)
T ss_dssp             HHHHTTCEEEEEEE
T ss_pred             HHHHCCCEEEEEec
Confidence            89999999988754

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=99.48  E-value=8.5e-14  Score=133.18  Aligned_cols=123  Identities=15%  Similarity=0.185  Sum_probs=88.8

Q ss_pred             hcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEE
Q 009871           71 FSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIV  150 (523)
Q Consensus        71 ~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V  150 (523)
                      +...++.+|||||||+|.++..+++.+ ..+|+|+|+|+.|++.|+++.... .+++++++|+..+    ++++++||+|
T Consensus        89 l~~~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~-~~~~~~~~d~~~~----~~~~~~fD~v  162 (254)
T 1xtp_A           89 LPGHGTSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAKRELAGM-PVGKFILASMETA----TLPPNTYDLI  162 (254)
T ss_dssp             STTCCCSEEEEETCTTTHHHHHTHHHH-CSEEEEEESCHHHHHHHHHHTTTS-SEEEEEESCGGGC----CCCSSCEEEE
T ss_pred             hcccCCCEEEEECCCcCHHHHHHHHhh-cCEEEEEeCCHHHHHHHHHHhccC-CceEEEEccHHHC----CCCCCCeEEE
Confidence            344578899999999999999998885 457999999999999999976433 6799999999877    5677899999


Q ss_pred             EE-------------------ccccccceeeecceEE-ecCC------eEEEeeCHHHHHHHHHhCCCcEEEEEe
Q 009871          151 TM-------------------ERLTGKDQKISENFYV-RGDG------TRAFYFSNDFLTSLFKENGFDVEELGL  199 (523)
Q Consensus       151 ~~-------------------~~~~~~~~~~~~~~~~-~~~g------~~~~~~~~~~l~~ll~~~Gf~~~~~~~  199 (523)
                      ++                   .+.+++++.+.-.... ...+      ...++++.+++.++|+++||+++++..
T Consensus       163 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~  237 (254)
T 1xtp_A          163 VIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVKEAF  237 (254)
T ss_dssp             EEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEEEEEE
T ss_pred             EEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccceecccCCcccCCHHHHHHHHHHCCCEEEEeee
Confidence            99                   1222333332210000 0000      011245889999999999999887654

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.47  E-value=5.9e-13  Score=127.80  Aligned_cols=107  Identities=16%  Similarity=0.175  Sum_probs=85.1

Q ss_pred             CCCCeEEEECCCccHHHHHHHhcC---CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhc
Q 009871          334 VAGKKVLELGCGCGGICSMVAAGS---ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEEN  410 (523)
Q Consensus       334 ~~~~~VLElG~G~G~l~~~~a~~~---~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~  410 (523)
                      .+|.+|||||||+|.++..++...   ..+|+++|+|+.||+.|++++...+..   .++.+...|..+         ++
T Consensus        69 ~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~---~~v~~~~~D~~~---------~~  136 (261)
T 4gek_A           69 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAP---TPVDVIEGDIRD---------IA  136 (261)
T ss_dssp             CTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCS---SCEEEEESCTTT---------CC
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccC---ceEEEeeccccc---------cc
Confidence            478899999999998888888763   348999999999999999999876654   467776655433         23


Q ss_pred             CCCccEEEEccccCCCC--ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee
Q 009871          411 NEGFEVILGTDVSYIPE--AILPLFATAKELTASSNKSLREDQQPAFILCHIF  461 (523)
Q Consensus       411 ~~~fD~Ii~~d~~y~~~--~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~  461 (523)
                      .++||+|+++.++++..  ....+++.+.++|         +|||.++++...
T Consensus       137 ~~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~L---------kpGG~lii~e~~  180 (261)
T 4gek_A          137 IENASMVVLNFTLQFLEPSERQALLDKIYQGL---------NPGGALVLSEKF  180 (261)
T ss_dssp             CCSEEEEEEESCGGGSCHHHHHHHHHHHHHHE---------EEEEEEEEEEEB
T ss_pred             ccccccceeeeeeeecCchhHhHHHHHHHHHc---------CCCcEEEEEecc
Confidence            45799999998887754  3457899999999         779999987654

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=99.47  E-value=2.8e-13  Score=126.49  Aligned_cols=134  Identities=10%  Similarity=0.165  Sum_probs=100.2

Q ss_pred             CCCCeEEEECCCccHHHHHHHhcCC-CEEEEEcCChHHHHHHHHHHHhcCCCC-CCCceEEEeeecCCCCcchhhhhhcC
Q 009871          334 VAGKKVLELGCGCGGICSMVAAGSA-DLVVATDGDSIALDLLAQNVTANLKPP-FLAKLITKRLEWGNRDHIEAIKEENN  411 (523)
Q Consensus       334 ~~~~~VLElG~G~G~l~~~~a~~~~-~~V~~~D~~~~~l~~~~~n~~~n~~~~-~~~~v~~~~ldw~~~~~~~~~~~~~~  411 (523)
                      .++.+|||||||+|.++..++..++ .+|+++|+|+.+++.+++|+..++... ...++.+...|....       +...
T Consensus        28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~-------~~~~  100 (217)
T 3jwh_A           28 SNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQ-------DKRF  100 (217)
T ss_dssp             TTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSC-------CGGG
T ss_pred             cCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccc-------cccC
Confidence            3677999999999999888888754 699999999999999999988766531 012577776665332       1224


Q ss_pred             CCccEEEEccccCCCC--ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecC--------------------CChhHH
Q 009871          412 EGFEVILGTDVSYIPE--AILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ--------------------VDEPSM  469 (523)
Q Consensus       412 ~~fD~Ii~~d~~y~~~--~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~--------------------~~~~~~  469 (523)
                      ++||+|+++.++++..  ....+++.+.++|         +|||.+++......                    .+..++
T Consensus       101 ~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L---------kpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  171 (217)
T 3jwh_A          101 HGYDAATVIEVIEHLDLSRLGAFERVLFEFA---------QPKIVIVTTPNIEYNVKFANLPAGKLRHKDHRFEWTRSQF  171 (217)
T ss_dssp             CSCSEEEEESCGGGCCHHHHHHHHHHHHTTT---------CCSEEEEEEEBHHHHHHTC-----------CCSCBCHHHH
T ss_pred             CCcCEEeeHHHHHcCCHHHHHHHHHHHHHHc---------CCCEEEEEccCcccchhhcccccccccccccccccCHHHH
Confidence            6899999999999876  4488999999999         67997766543210                    134455


Q ss_pred             H----HHHHHcCCEEEEE
Q 009871          470 L----SAATQCGFRLVDK  483 (523)
Q Consensus       470 ~----~~~~~~gf~~~~~  483 (523)
                      .    +.++++||++...
T Consensus       172 ~~~~~~~~~~~Gf~v~~~  189 (217)
T 3jwh_A          172 QNWANKITERFAYNVQFQ  189 (217)
T ss_dssp             HHHHHHHHHHSSEEEEEC
T ss_pred             HHHHHHHHHHcCceEEEE
Confidence            5    7778999998655

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=99.47  E-value=2.2e-13  Score=126.01  Aligned_cols=143  Identities=17%  Similarity=0.157  Sum_probs=110.7

Q ss_pred             ccchhHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEe
Q 009871          315 MLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKR  394 (523)
Q Consensus       315 ~~W~~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~  394 (523)
                      ..++.+..+.+++....  .++.+|||+|||+|.++..++..+..+|+++|+++.+++.+++|+..++..    .+.+..
T Consensus        42 ~~~~~~~~~~~~l~~~~--~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~----~v~~~~  115 (205)
T 3grz_A           42 GNHQTTQLAMLGIERAM--VKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALNGIY----DIALQK  115 (205)
T ss_dssp             CCHHHHHHHHHHHHHHC--SSCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCC----CCEEEE
T ss_pred             CCCccHHHHHHHHHHhc--cCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC----ceEEEe
Confidence            35677777777776543  367899999999998888888877779999999999999999999988764    266766


Q ss_pred             eecCCCCcchhhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhHHHHHHH
Q 009871          395 LEWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAAT  474 (523)
Q Consensus       395 ldw~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~~~~~~  474 (523)
                      .|+.+.         .+++||+|+++.++.   .+..+++.+.++|         +|+|.++++.... .....+.+.++
T Consensus       116 ~d~~~~---------~~~~fD~i~~~~~~~---~~~~~l~~~~~~L---------~~gG~l~~~~~~~-~~~~~~~~~~~  173 (205)
T 3grz_A          116 TSLLAD---------VDGKFDLIVANILAE---ILLDLIPQLDSHL---------NEDGQVIFSGIDY-LQLPKIEQALA  173 (205)
T ss_dssp             SSTTTT---------CCSCEEEEEEESCHH---HHHHHGGGSGGGE---------EEEEEEEEEEEEG-GGHHHHHHHHH
T ss_pred             cccccc---------CCCCceEEEECCcHH---HHHHHHHHHHHhc---------CCCCEEEEEecCc-ccHHHHHHHHH
Confidence            666432         246899999985442   3567778888888         6799999875553 24567888899


Q ss_pred             HcCCEEEEEcC
Q 009871          475 QCGFRLVDKWP  485 (523)
Q Consensus       475 ~~gf~~~~~~~  485 (523)
                      +.||++.++..
T Consensus       174 ~~Gf~~~~~~~  184 (205)
T 3grz_A          174 ENSFQIDLKMR  184 (205)
T ss_dssp             HTTEEEEEEEE
T ss_pred             HcCCceEEeec
Confidence            99999988754

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=99.47  E-value=3.4e-13  Score=125.69  Aligned_cols=70  Identities=27%  Similarity=0.139  Sum_probs=60.6

Q ss_pred             CCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871           73 GAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM  152 (523)
Q Consensus        73 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~  152 (523)
                      ..++.+|||||||+|.++..+++.  +.+|+|+|+|+.|++.|++.   ...+++++++|+.++     +++++||+|++
T Consensus        44 ~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~---~~~~~~~~~~d~~~~-----~~~~~~D~v~~  113 (218)
T 3ou2_A           44 GNIRGDVLELASGTGYWTRHLSGL--ADRVTALDGSAEMIAEAGRH---GLDNVEFRQQDLFDW-----TPDRQWDAVFF  113 (218)
T ss_dssp             TTSCSEEEEESCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHGGG---CCTTEEEEECCTTSC-----CCSSCEEEEEE
T ss_pred             CCCCCeEEEECCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHhc---CCCCeEEEecccccC-----CCCCceeEEEE
Confidence            356679999999999999999998  66899999999999999983   226799999999865     45789999999

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.47  E-value=3.2e-13  Score=129.43  Aligned_cols=121  Identities=14%  Similarity=0.210  Sum_probs=88.2

Q ss_pred             cCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC--CCcEEEEEeeccCCccCCCCCCCceeE
Q 009871           72 SGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISDDLSRQISPSSIDI  149 (523)
Q Consensus        72 ~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~~~~~~~~~~fD~  149 (523)
                      ...++.+|||||||+|..+..+++.++. +|+|+|+|+.|++.|+++....  ..+++++++|+.++    ++++++||+
T Consensus        43 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~----~~~~~~fD~  117 (257)
T 3f4k_A           43 ELTDDAKIADIGCGTGGQTLFLADYVKG-QITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNL----PFQNEELDL  117 (257)
T ss_dssp             CCCTTCEEEEETCTTSHHHHHHHHHCCS-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSC----SSCTTCEEE
T ss_pred             cCCCCCeEEEeCCCCCHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhC----CCCCCCEEE
Confidence            3456789999999999999999999764 8999999999999999976433  24599999999877    677899999


Q ss_pred             EEEccc---cccceeeec-ceEEecCCeEEE------------------------eeCHHHHHHHHHhCCCcEEEE
Q 009871          150 VTMERL---TGKDQKISE-NFYVRGDGTRAF------------------------YFSNDFLTSLFKENGFDVEEL  197 (523)
Q Consensus       150 V~~~~~---~~~~~~~~~-~~~~~~~g~~~~------------------------~~~~~~l~~ll~~~Gf~~~~~  197 (523)
                      |++...   ......+.. ...++++|.+++                        +++.+++.++++++||+++..
T Consensus       118 v~~~~~l~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~  193 (257)
T 3f4k_A          118 IWSEGAIYNIGFERGMNEWSKYLKKGGFIAVSEASWFTSERPAEIEDFWMDAYPEISVIPTCIDKMERAGYTPTAH  193 (257)
T ss_dssp             EEEESCSCCCCHHHHHHHHHTTEEEEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCCBHHHHHHHHHHTTEEEEEE
T ss_pred             EEecChHhhcCHHHHHHHHHHHcCCCcEEEEEEeeccCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHCCCeEEEE
Confidence            999110   000000000 013445554432                        236789999999999998764

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=99.47  E-value=2.4e-13  Score=124.82  Aligned_cols=146  Identities=16%  Similarity=0.169  Sum_probs=95.3

Q ss_pred             hhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC-CCcEEEEEeeccCCccCCCCCCCcee
Q 009871           70 YFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT-ETRVSTFVCDLISDDLSRQISPSSID  148 (523)
Q Consensus        70 ~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~-~~~v~~~~~d~~~~~~~~~~~~~~fD  148 (523)
                      .+...++.+|||+|||+|..+..+++.  +.+|+|+|+|+.|++.|+++.... ..++++.++|+.++    ++ +++||
T Consensus        27 ~~~~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~----~~-~~~~D   99 (199)
T 2xvm_A           27 AVKVVKPGKTLDLGCGNGRNSLYLAAN--GYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNL----TF-DRQYD   99 (199)
T ss_dssp             HTTTSCSCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGC----CC-CCCEE
T ss_pred             HhhccCCCeEEEEcCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhC----CC-CCCce
Confidence            344456789999999999999999988  668999999999999999876432 24799999999876    45 78999


Q ss_pred             EEEEc---cccccc--e-eeec-ceEEecCCeEE-----------------EeeCHHHHHHHHHhCCCcEEEEEeEeeee
Q 009871          149 IVTME---RLTGKD--Q-KISE-NFYVRGDGTRA-----------------FYFSNDFLTSLFKENGFDVEELGLCCKQV  204 (523)
Q Consensus       149 ~V~~~---~~~~~~--~-~~~~-~~~~~~~g~~~-----------------~~~~~~~l~~ll~~~Gf~~~~~~~~~~~~  204 (523)
                      +|++.   ......  . .+.. ...++++|.++                 +.++.+++.++|++  |+++.........
T Consensus       100 ~v~~~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--f~~~~~~~~~~~~  177 (199)
T 2xvm_A          100 FILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYEG--WERVKYNEDVGEL  177 (199)
T ss_dssp             EEEEESCGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCCSCCSCCBCTTHHHHHTTT--SEEEEEECCEEEE
T ss_pred             EEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEeeccCCcCCCCCCCCccCHHHHHHHhcC--CeEEEecccceEE
Confidence            99991   110100  0 0000 01234444432                 24588999999985  9988776543333


Q ss_pred             eec-ccCccceeEEEEEEEEe
Q 009871          205 ENR-ARELVMNRRWVQAVFCS  224 (523)
Q Consensus       205 ~~~-~~~~~~~r~~~~~~~~~  224 (523)
                      ... ..+......|.....+|
T Consensus       178 ~~~~~~g~~~~~~~~~~~arK  198 (199)
T 2xvm_A          178 HRTDANGNRIKLRFATMLARK  198 (199)
T ss_dssp             EEECTTSCEEEEEEEEEEEEC
T ss_pred             EeecCCCCeeeEEEEEEEEec
Confidence            222 22333334455555554

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=99.47  E-value=8.9e-13  Score=133.29  Aligned_cols=174  Identities=14%  Similarity=0.136  Sum_probs=124.1

Q ss_pred             CceEEEEEEcCceEEEEEecccccccCCCcccccchhHHHHHHHHhcCC--CCCCCCeEEEECCCccHHHHHHHhcCCCE
Q 009871          283 DNEMIEVNLRDRSFKIEVLSKEYQHTCRSTGLMLWESAHLMAAVLARNP--TIVAGKKVLELGCGCGGICSMVAAGSADL  360 (523)
Q Consensus       283 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~G~~~W~~a~~la~~l~~~~--~~~~~~~VLElG~G~G~l~~~~a~~~~~~  360 (523)
                      .+....+.+.+..+++...++.+...      .+.+++..+.+.+....  ...++.+|||+|||+|.++..++..+ .+
T Consensus       185 ~w~~~~~~~~g~~~~~~~~pgvFs~~------~~d~~t~~ll~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~la~~g-~~  257 (381)
T 3dmg_A          185 LWRAFSARILGAEYTFHHLPGVFSAG------KVDPASLLLLEALQERLGPEGVRGRQVLDLGAGYGALTLPLARMG-AE  257 (381)
T ss_dssp             CCEEEEEEETTEEEEEEECTTCTTTT------SCCHHHHHHHHHHHHHHCTTTTTTCEEEEETCTTSTTHHHHHHTT-CE
T ss_pred             ccceeeEEecCceEEEEeCCCceeCC------CCCHHHHHHHHHHHHhhcccCCCCCEEEEEeeeCCHHHHHHHHcC-CE
Confidence            34667788888889998777665322      23456666666665432  23477899999999999988888885 48


Q ss_pred             EEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCccEEEEccccCC-----CCChHHHHHH
Q 009871          361 VVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYI-----PEAILPLFAT  435 (523)
Q Consensus       361 V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~fD~Ii~~d~~y~-----~~~~~~l~~~  435 (523)
                      |+++|+|+.+++.+++|+..|+..     +.+...|+.+..       ...++||+|+++.++++     .+....+++.
T Consensus       258 V~gvDis~~al~~A~~n~~~~~~~-----v~~~~~D~~~~~-------~~~~~fD~Ii~npp~~~~~~~~~~~~~~~l~~  325 (381)
T 3dmg_A          258 VVGVEDDLASVLSLQKGLEANALK-----AQALHSDVDEAL-------TEEARFDIIVTNPPFHVGGAVILDVAQAFVNV  325 (381)
T ss_dssp             EEEEESBHHHHHHHHHHHHHTTCC-----CEEEECSTTTTS-------CTTCCEEEEEECCCCCTTCSSCCHHHHHHHHH
T ss_pred             EEEEECCHHHHHHHHHHHHHcCCC-----eEEEEcchhhcc-------ccCCCeEEEEECCchhhcccccHHHHHHHHHH
Confidence            999999999999999999998763     455555554321       12368999999888776     4567789999


Q ss_pred             HHHHhhccCCCCCCCCCcEEEEEEeecCCChhHHHHH-H------HHcCCEEEEEcC
Q 009871          436 AKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSA-A------TQCGFRLVDKWP  485 (523)
Q Consensus       436 l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~~~~-~------~~~gf~~~~~~~  485 (523)
                      +.++|         +|||.++++.... ......++. .      ++.||++.+...
T Consensus       326 ~~~~L---------kpGG~l~iv~n~~-l~~~~~l~~~f~~v~~l~~~gF~Vl~a~~  372 (381)
T 3dmg_A          326 AAARL---------RPGGVFFLVSNPF-LKYEPLLEEKFGAFQTLKVAEYKVLFAEK  372 (381)
T ss_dssp             HHHHE---------EEEEEEEEEECTT-SCHHHHHHHHHSCCEEEEESSSEEEEEEC
T ss_pred             HHHhc---------CcCcEEEEEEcCC-CChHHHHHHhhccEEEEeCCCEEEEEEEE
Confidence            99999         6799999876543 233222222 1      456777776655

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=99.47  E-value=2.8e-13  Score=132.90  Aligned_cols=123  Identities=15%  Similarity=0.079  Sum_probs=89.1

Q ss_pred             cCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC--CCcEEEEEeeccCCccCCCCCCCceeE
Q 009871           72 SGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISDDLSRQISPSSIDI  149 (523)
Q Consensus        72 ~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~~~~~~~~~~fD~  149 (523)
                      ...++.+|||||||+|..+..+++.+ +++|+|+|+|+.|++.|+++....  ..++++.++|+.++    ++++++||+
T Consensus        79 ~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~----~~~~~~fD~  153 (297)
T 2o57_A           79 VLQRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEI----PCEDNSYDF  153 (297)
T ss_dssp             CCCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSC----SSCTTCEEE
T ss_pred             CCCCCCEEEEeCCCCCHHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccC----CCCCCCEeE
Confidence            44678899999999999999999875 468999999999999999876432  35799999999987    677899999


Q ss_pred             EEE-----------------ccccccceeeecceEEecCCe-------------EEEeeCHHHHHHHHHhCCCcEEEEEe
Q 009871          150 VTM-----------------ERLTGKDQKISENFYVRGDGT-------------RAFYFSNDFLTSLFKENGFDVEELGL  199 (523)
Q Consensus       150 V~~-----------------~~~~~~~~~~~~~~~~~~~g~-------------~~~~~~~~~l~~ll~~~Gf~~~~~~~  199 (523)
                      |++                 .+.+++++.+.-......+..             ...+.+.+++.++++++||+++.+..
T Consensus       154 v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~  233 (297)
T 2o57_A          154 IWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDPMKEDGIDKSSIQPILDRIKLHDMGSLGLYRSLAKECGLVTLRTFS  233 (297)
T ss_dssp             EEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEECTTCCGGGGHHHHHHHTCSSCCCHHHHHHHHHHTTEEEEEEEE
T ss_pred             EEecchhhhcCCHHHHHHHHHHHcCCCeEEEEEEeccCCCCchHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCeEEEEEE
Confidence            999                 222333333221111111100             00123788999999999999877654

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=99.47  E-value=7.4e-13  Score=131.24  Aligned_cols=145  Identities=11%  Similarity=0.084  Sum_probs=111.7

Q ss_pred             hHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecC
Q 009871          319 SAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWG  398 (523)
Q Consensus       319 ~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~  398 (523)
                      +...+.+.+.......++.+|||+|||+|.++..++.....+|+++|+|+.+++.+++++..++..   .++.+...|+.
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~---~~v~~~~~d~~  150 (318)
T 2fk8_A           74 AQYAKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTN---RSRQVLLQGWE  150 (318)
T ss_dssp             HHHHHHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCS---SCEEEEESCGG
T ss_pred             HHHHHHHHHHHhcCCCCcCEEEEEcccchHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCC---CceEEEECChH
Confidence            344556666666666788999999999998888888773348999999999999999999887664   45666655543


Q ss_pred             CCCcchhhhhhcCCCccEEEEccccCCC--CChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCC------------
Q 009871          399 NRDHIEAIKEENNEGFEVILGTDVSYIP--EAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQV------------  464 (523)
Q Consensus       399 ~~~~~~~~~~~~~~~fD~Ii~~d~~y~~--~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~------------  464 (523)
                      +         + +++||+|++..++++.  +....+++.+.++|         +|||.+++.......            
T Consensus       151 ~---------~-~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L---------kpgG~l~~~~~~~~~~~~~~~~~~~~~  211 (318)
T 2fk8_A          151 D---------F-AEPVDRIVSIEAFEHFGHENYDDFFKRCFNIM---------PADGRMTVQSSVSYHPYEMAARGKKLS  211 (318)
T ss_dssp             G---------C-CCCCSEEEEESCGGGTCGGGHHHHHHHHHHHS---------CTTCEEEEEEEECCCHHHHHTTCHHHH
T ss_pred             H---------C-CCCcCEEEEeChHHhcCHHHHHHHHHHHHHhc---------CCCcEEEEEEeccCCchhhhhcccccc
Confidence            2         1 2689999999999886  68899999999999         779999987655321            


Q ss_pred             ---------------------ChhHHHHHHHHcCCEEEEEcC
Q 009871          465 ---------------------DEPSMLSAATQCGFRLVDKWP  485 (523)
Q Consensus       465 ---------------------~~~~~~~~~~~~gf~~~~~~~  485 (523)
                                           +...+.+.+++.||++.++..
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~aGf~~~~~~~  253 (318)
T 2fk8_A          212 FETARFIKFIVTEIFPGGRLPSTEMMVEHGEKAGFTVPEPLS  253 (318)
T ss_dssp             HHHHHHHHHHHHHTSTTCCCCCHHHHHHHHHHTTCBCCCCEE
T ss_pred             ccccchhhHHHHhcCCCCcCCCHHHHHHHHHhCCCEEEEEEe
Confidence                                 234566778889998876543

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.47  E-value=7.2e-13  Score=122.23  Aligned_cols=125  Identities=10%  Similarity=0.113  Sum_probs=100.2

Q ss_pred             CCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCcc
Q 009871          336 GKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFE  415 (523)
Q Consensus       336 ~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~fD  415 (523)
                      +.+|||+|||+|.++..++..+. +|+++|+++.+++.++++.         .++.+...|+.+.       ++.+++||
T Consensus        42 ~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~---------~~~~~~~~d~~~~-------~~~~~~fD  104 (203)
T 3h2b_A           42 DGVILDVGSGTGRWTGHLASLGH-QIEGLEPATRLVELARQTH---------PSVTFHHGTITDL-------SDSPKRWA  104 (203)
T ss_dssp             CSCEEEETCTTCHHHHHHHHTTC-CEEEECCCHHHHHHHHHHC---------TTSEEECCCGGGG-------GGSCCCEE
T ss_pred             CCeEEEecCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHhC---------CCCeEEeCccccc-------ccCCCCeE
Confidence            67999999999988888888854 7999999999999998872         2455555544321       24467999


Q ss_pred             EEEEccccCCCC--ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecC--------------CChhHHHHHHHHcCCE
Q 009871          416 VILGTDVSYIPE--AILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ--------------VDEPSMLSAATQCGFR  479 (523)
Q Consensus       416 ~Ii~~d~~y~~~--~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~--------------~~~~~~~~~~~~~gf~  479 (523)
                      +|++..++++..  ....+++.+.++|         +|||.+++......              .+...+.+.++++||+
T Consensus       105 ~v~~~~~l~~~~~~~~~~~l~~~~~~L---------~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~  175 (203)
T 3h2b_A          105 GLLAWYSLIHMGPGELPDALVALRMAV---------EDGGGLLMSFFSGPSLEPMYHPVATAYRWPLPELAQALETAGFQ  175 (203)
T ss_dssp             EEEEESSSTTCCTTTHHHHHHHHHHTE---------EEEEEEEEEEECCSSCEEECCSSSCEEECCHHHHHHHHHHTTEE
T ss_pred             EEEehhhHhcCCHHHHHHHHHHHHHHc---------CCCcEEEEEEccCCchhhhhchhhhhccCCHHHHHHHHHHCCCc
Confidence            999999998864  8999999999999         67999998775432              3467788999999999


Q ss_pred             EEEEcCC
Q 009871          480 LVDKWPS  486 (523)
Q Consensus       480 ~~~~~~~  486 (523)
                      +.++...
T Consensus       176 ~~~~~~~  182 (203)
T 3h2b_A          176 VTSSHWD  182 (203)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEec
Confidence            9988653

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=99.46  E-value=1.8e-13  Score=130.29  Aligned_cols=112  Identities=13%  Similarity=0.102  Sum_probs=85.6

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEEE-
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM-  152 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~-  152 (523)
                      .++.+|||||||+|.++..+++.++  +|+|+|+|+.|++.|+++...   +++++++|+.++     +++++||+|++ 
T Consensus        41 ~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~~---~v~~~~~d~~~~-----~~~~~fD~v~~~  110 (250)
T 2p7i_A           41 FRPGNLLELGSFKGDFTSRLQEHFN--DITCVEASEEAISHAQGRLKD---GITYIHSRFEDA-----QLPRRYDNIVLT  110 (250)
T ss_dssp             CCSSCEEEESCTTSHHHHHHTTTCS--CEEEEESCHHHHHHHHHHSCS---CEEEEESCGGGC-----CCSSCEEEEEEE
T ss_pred             cCCCcEEEECCCCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhhhC---CeEEEEccHHHc-----CcCCcccEEEEh
Confidence            4567899999999999999998865  599999999999999987642   799999999865     35789999999 


Q ss_pred             ----------------c-cccccceeeecceEEecCC---------------------------eEEEeeCHHHHHHHHH
Q 009871          153 ----------------E-RLTGKDQKISENFYVRGDG---------------------------TRAFYFSNDFLTSLFK  188 (523)
Q Consensus       153 ----------------~-~~~~~~~~~~~~~~~~~~g---------------------------~~~~~~~~~~l~~ll~  188 (523)
                                      . +.+++++.+.-   ..++.                           ....+++.+++.++++
T Consensus       111 ~~l~~~~~~~~~l~~~~~~~LkpgG~l~i---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  187 (250)
T 2p7i_A          111 HVLEHIDDPVALLKRINDDWLAEGGRLFL---VCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDAS  187 (250)
T ss_dssp             SCGGGCSSHHHHHHHHHHTTEEEEEEEEE---EEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHH
T ss_pred             hHHHhhcCHHHHHHHHHHHhcCCCCEEEE---EcCChHHHHHHHHHHcCccccchhcccccccccccccCCHHHHHHHHH
Confidence                            3 45455544331   11110                           0112468999999999


Q ss_pred             hCCCcEEEEE
Q 009871          189 ENGFDVEELG  198 (523)
Q Consensus       189 ~~Gf~~~~~~  198 (523)
                      ++||+++++.
T Consensus       188 ~~Gf~~~~~~  197 (250)
T 2p7i_A          188 RAGLQVTYRS  197 (250)
T ss_dssp             HTTCEEEEEE
T ss_pred             HCCCeEEEEe
Confidence            9999987764

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=99.46  E-value=1.4e-13  Score=125.75  Aligned_cols=112  Identities=14%  Similarity=0.153  Sum_probs=88.3

Q ss_pred             CCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCC
Q 009871          334 VAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG  413 (523)
Q Consensus       334 ~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~  413 (523)
                      .++.+|||+|||+|.++..+++.+..+|+++|+|+.+++.+++|+..++.    .++.+...|+.+.     ...+...+
T Consensus        43 ~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~----~~v~~~~~d~~~~-----~~~~~~~~  113 (189)
T 3p9n_A           43 LTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEALGL----SGATLRRGAVAAV-----VAAGTTSP  113 (189)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHHHTC----SCEEEEESCHHHH-----HHHCCSSC
T ss_pred             CCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCC----CceEEEEccHHHH-----HhhccCCC
Confidence            47889999999999888878888878999999999999999999999876    3566666554321     11233579


Q ss_pred             ccEEEEccccCCC-CChHHHHHHHHH--HhhccCCCCCCCCCcEEEEEEeecC
Q 009871          414 FEVILGTDVSYIP-EAILPLFATAKE--LTASSNKSLREDQQPAFILCHIFRQ  463 (523)
Q Consensus       414 fD~Ii~~d~~y~~-~~~~~l~~~l~~--ll~~~~~~~~~~~~g~~~l~~~~r~  463 (523)
                      ||+|+++.+.+.. +....++..+.+  +|         +|+|.+++.+..+.
T Consensus       114 fD~i~~~~p~~~~~~~~~~~l~~~~~~~~L---------~pgG~l~~~~~~~~  157 (189)
T 3p9n_A          114 VDLVLADPPYNVDSADVDAILAALGTNGWT---------REGTVAVVERATTC  157 (189)
T ss_dssp             CSEEEECCCTTSCHHHHHHHHHHHHHSSSC---------CTTCEEEEEEETTS
T ss_pred             ccEEEECCCCCcchhhHHHHHHHHHhcCcc---------CCCeEEEEEecCCC
Confidence            9999997664443 678889999988  89         78999999877643

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=99.46  E-value=1.4e-12  Score=118.82  Aligned_cols=164  Identities=16%  Similarity=0.206  Sum_probs=114.2

Q ss_pred             CCceEEEEEEcCceEEEEEecccccccCCCcccccchhHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEE
Q 009871          282 EDNEMIEVNLRDRSFKIEVLSKEYQHTCRSTGLMLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLV  361 (523)
Q Consensus       282 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~G~~~W~~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V  361 (523)
                      .....+...+.+..+.+......+...      .....+..+.+.+    ...++.+|||+|||+|.++..++.. ..+|
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~~----~~~~~~~vLdiG~G~G~~~~~~~~~-~~~v   77 (194)
T 1dus_A            9 SDVKIVEDILRGKKLKFKTDSGVFSYG------KVDKGTKILVENV----VVDKDDDILDLGCGYGVIGIALADE-VKST   77 (194)
T ss_dssp             CCEEEEEEEETTEEEEEEEETTSTTTT------SCCHHHHHHHHHC----CCCTTCEEEEETCTTSHHHHHHGGG-SSEE
T ss_pred             ccccEEeeecCCCceEEEeCCCcCCcc------ccchHHHHHHHHc----ccCCCCeEEEeCCCCCHHHHHHHHc-CCeE
Confidence            445666677788888776544333210      0112333344433    3347789999999999888888877 6789


Q ss_pred             EEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCccEEEEccccCC-CCChHHHHHHHHHHh
Q 009871          362 VATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYI-PEAILPLFATAKELT  440 (523)
Q Consensus       362 ~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~fD~Ii~~d~~y~-~~~~~~l~~~l~~ll  440 (523)
                      +++|+++.+++.+++|+..++...  .++.+...|+.+.        ...++||+|+++.++++ ......+++.+.++|
T Consensus        78 ~~~D~~~~~~~~a~~~~~~~~~~~--~~~~~~~~d~~~~--------~~~~~~D~v~~~~~~~~~~~~~~~~l~~~~~~L  147 (194)
T 1dus_A           78 TMADINRRAIKLAKENIKLNNLDN--YDIRVVHSDLYEN--------VKDRKYNKIITNPPIRAGKEVLHRIIEEGKELL  147 (194)
T ss_dssp             EEEESCHHHHHHHHHHHHHTTCTT--SCEEEEECSTTTT--------CTTSCEEEEEECCCSTTCHHHHHHHHHHHHHHE
T ss_pred             EEEECCHHHHHHHHHHHHHcCCCc--cceEEEECchhcc--------cccCCceEEEECCCcccchhHHHHHHHHHHHHc
Confidence            999999999999999999876631  1477777766543        12468999999876655 356788999999999


Q ss_pred             hccCCCCCCCCCcEEEEEEeecCCChhHHHHHHHHc
Q 009871          441 ASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQC  476 (523)
Q Consensus       441 ~~~~~~~~~~~~g~~~l~~~~r~~~~~~~~~~~~~~  476 (523)
                               +|+|.+++....+. ....+.+.+++.
T Consensus       148 ---------~~gG~l~~~~~~~~-~~~~~~~~l~~~  173 (194)
T 1dus_A          148 ---------KDNGEIWVVIQTKQ-GAKSLAKYMKDV  173 (194)
T ss_dssp             ---------EEEEEEEEEEESTH-HHHHHHHHHHHH
T ss_pred             ---------CCCCEEEEEECCCC-ChHHHHHHHHHH
Confidence                     67999998876642 233466666665

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=99.46  E-value=4.7e-13  Score=128.64  Aligned_cols=125  Identities=18%  Similarity=0.170  Sum_probs=90.3

Q ss_pred             hhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC-CCcEEEEEeeccCCccCCCCCCCcee
Q 009871           70 YFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT-ETRVSTFVCDLISDDLSRQISPSSID  148 (523)
Q Consensus        70 ~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~-~~~v~~~~~d~~~~~~~~~~~~~~fD  148 (523)
                      .+...++.+|||||||+|.++..+++.++  +|+|+|+|+.|++.|+++.... ..++.+.++|+.++    ++++++||
T Consensus        32 ~l~~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l----~~~~~~fD  105 (260)
T 1vl5_A           32 IAALKGNEEVLDVATGGGHVANAFAPFVK--KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQM----PFTDERFH  105 (260)
T ss_dssp             HHTCCSCCEEEEETCTTCHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CC----CSCTTCEE
T ss_pred             HhCCCCCCEEEEEeCCCCHHHHHHHHhCC--EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhC----CCCCCCEE
Confidence            34446788999999999999999998864  7999999999999999876433 25799999999987    67789999


Q ss_pred             EEEE-----------------ccccccceeeecceEEecC----------------CeEEEeeCHHHHHHHHHhCCCcEE
Q 009871          149 IVTM-----------------ERLTGKDQKISENFYVRGD----------------GTRAFYFSNDFLTSLFKENGFDVE  195 (523)
Q Consensus       149 ~V~~-----------------~~~~~~~~~~~~~~~~~~~----------------g~~~~~~~~~~l~~ll~~~Gf~~~  195 (523)
                      +|++                 .+.+++++.+.-.....++                .....+++.+++.++|+++||.++
T Consensus       106 ~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~  185 (260)
T 1vl5_A          106 IVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSAPENDAFDVFYNYVEKERDYSHHRAWKKSDWLKMLEEAGFELE  185 (260)
T ss_dssp             EEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHHTCEEE
T ss_pred             EEEEhhhhHhcCCHHHHHHHHHHHcCCCCEEEEEEcCCCCCHHHHHHHHHHHHhcCccccCCCCHHHHHHHHHHCCCeEE
Confidence            9999                 2333444433211111111                011223578899999999999987


Q ss_pred             EEEeE
Q 009871          196 ELGLC  200 (523)
Q Consensus       196 ~~~~~  200 (523)
                      .+...
T Consensus       186 ~~~~~  190 (260)
T 1vl5_A          186 ELHCF  190 (260)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            76554

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=99.46  E-value=1e-12  Score=128.32  Aligned_cols=158  Identities=11%  Similarity=0.117  Sum_probs=96.8

Q ss_pred             HHHHHHHHhcccccc-c--chhhhHHHHhhhhcC--CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHh
Q 009871           43 KYWDLFYKRHQDRFF-K--DRHYLDKEWGRYFSG--AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMT  117 (523)
Q Consensus        43 ~~Wd~~y~~~~~~f~-~--~~~~l~~~~~~~~~~--~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~  117 (523)
                      .||+.+|........ .  ...+....+.+.+..  .++.+|||||||+|..+..++. .++.+|+|+|+|+.|++.|++
T Consensus        34 ~y~~~~y~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~vLDiGcG~G~~~~l~~~-~~~~~v~gvD~s~~~l~~a~~  112 (289)
T 2g72_A           34 AYLRNNYAPPRGDLCNPNGVGPWKLRCLAQTFATGEVSGRTLIDIGSGPTVYQLLSAC-SHFEDITMTDFLEVNRQELGR  112 (289)
T ss_dssp             HHHHHHHSTTTTCCSSTTSHHHHHHHHHHHHHHTSCSCCSEEEEETCTTCCGGGTTGG-GGCSEEEEECSCHHHHHHHHH
T ss_pred             HHHHHHhcCcccchhhhhHHHHHHHHHHHHHhCCCCCCCCeEEEECCCcChHHHHhhc-cCCCeEEEeCCCHHHHHHHHH
Confidence            567777765332211 0  122333444444422  3678999999999995543333 335689999999999999988


Q ss_pred             ccccCC-------------------------------CcEEEEEeeccC-CccCC-CCCCCceeEEEE------------
Q 009871          118 HKDFTE-------------------------------TRVSTFVCDLIS-DDLSR-QISPSSIDIVTM------------  152 (523)
Q Consensus       118 ~~~~~~-------------------------------~~v~~~~~d~~~-~~~~~-~~~~~~fD~V~~------------  152 (523)
                      +.....                               ..+.++++|+.+ +.++. .+++++||+|++            
T Consensus       113 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~  192 (289)
T 2g72_A          113 WLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLA  192 (289)
T ss_dssp             HHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHH
T ss_pred             HHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHhhhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHH
Confidence            542110                               015677889886 42211 245678999999            


Q ss_pred             ---------ccccccceeeec------ceEEecCCeE-EEeeCHHHHHHHHHhCCCcEEEEEeEe
Q 009871          153 ---------ERLTGKDQKISE------NFYVRGDGTR-AFYFSNDFLTSLFKENGFDVEELGLCC  201 (523)
Q Consensus       153 ---------~~~~~~~~~~~~------~~~~~~~g~~-~~~~~~~~l~~ll~~~Gf~~~~~~~~~  201 (523)
                               .+++++++.+.-      .++..+++.. ..+++.+++.++|+++||.++.+....
T Consensus       193 ~~~~~l~~~~r~LkpGG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~  257 (289)
T 2g72_A          193 SFQRALDHITTLLRPGGHLLLIGALEESWYLAGEARLTVVPVSEEEVREALVRSGYKVRDLRTYI  257 (289)
T ss_dssp             HHHHHHHHHHTTEEEEEEEEEEEEESCCEEEETTEEEECCCCCHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             HHHHHHHHHHHhcCCCCEEEEEEecCcceEEcCCeeeeeccCCHHHHHHHHHHcCCeEEEeeEee
Confidence                     233445544331      1122222222 235699999999999999998876554

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=99.46  E-value=4.5e-13  Score=127.14  Aligned_cols=130  Identities=18%  Similarity=0.255  Sum_probs=102.4

Q ss_pred             CCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCC
Q 009871          334 VAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG  413 (523)
Q Consensus       334 ~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~  413 (523)
                      .++.+|||||||+|.++..++..+..+|+++|+++.+++.++++...       .++.+...|..+.       +++.++
T Consensus        42 ~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~-------~~~~~~~~d~~~~-------~~~~~~  107 (243)
T 3bkw_A           42 VGGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPD-------TGITYERADLDKL-------HLPQDS  107 (243)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCS-------SSEEEEECCGGGC-------CCCTTC
T ss_pred             cCCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHHHHHHHhccc-------CCceEEEcChhhc-------cCCCCC
Confidence            46789999999999888888888665999999999999999876543       2456665554432       133568


Q ss_pred             ccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec-----------------------C-------
Q 009871          414 FEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFR-----------------------Q-------  463 (523)
Q Consensus       414 fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r-----------------------~-------  463 (523)
                      ||+|+++.++++......+++.+.++|         +|||.+++.....                       .       
T Consensus       108 fD~v~~~~~l~~~~~~~~~l~~~~~~L---------~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (243)
T 3bkw_A          108 FDLAYSSLALHYVEDVARLFRTVHQAL---------SPGGHFVFSTEHPIYMAPARPGWAIDAEGRRTWPIDRYLVEGPR  178 (243)
T ss_dssp             EEEEEEESCGGGCSCHHHHHHHHHHHE---------EEEEEEEEEEECHHHHCCSSCSCEECTTSCEEEEECCTTCCEEE
T ss_pred             ceEEEEeccccccchHHHHHHHHHHhc---------CcCcEEEEEeCCcccccCcCcceeecCCCceEEeecccccccce
Confidence            999999999999889999999999999         6799998865320                       0       


Q ss_pred             -------------CChhHHHHHHHHcCCEEEEEcCC
Q 009871          464 -------------VDEPSMLSAATQCGFRLVDKWPS  486 (523)
Q Consensus       464 -------------~~~~~~~~~~~~~gf~~~~~~~~  486 (523)
                                   .+..++.+.++++||++.++...
T Consensus       179 ~~~~~~~~~~~~~~t~~~~~~~l~~aGF~~~~~~~~  214 (243)
T 3bkw_A          179 KTDWLAKGVVKHHRTVGTTLNALIRSGFAIEHVEEF  214 (243)
T ss_dssp             CTTHHHHSCCEEECCHHHHHHHHHHTTCEEEEEEEC
T ss_pred             eeeeccCceEEEeccHHHHHHHHHHcCCEeeeeccC
Confidence                         13466788899999999988664

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=99.46  E-value=7.3e-14  Score=136.24  Aligned_cols=120  Identities=14%  Similarity=0.190  Sum_probs=87.1

Q ss_pred             CCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCC--CcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871           75 GRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQISPSSIDIVTM  152 (523)
Q Consensus        75 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~V~~  152 (523)
                      ++.+|||||||+|.++..+++.  +.+|+|+|+|+.|++.|+++....+  .+++++++|+.++.   ++++++||+|++
T Consensus        68 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~~~~~fD~v~~  142 (285)
T 4htf_A           68 QKLRVLDAGGGEGQTAIKMAER--GHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVA---SHLETPVDLILF  142 (285)
T ss_dssp             SCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTG---GGCSSCEEEEEE
T ss_pred             CCCEEEEeCCcchHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhh---hhcCCCceEEEE
Confidence            4679999999999999999988  6789999999999999999764332  57999999998762   256789999999


Q ss_pred             -----------------ccccccceeeecceEEe-------------------------cCCeEEEeeCHHHHHHHHHhC
Q 009871          153 -----------------ERLTGKDQKISENFYVR-------------------------GDGTRAFYFSNDFLTSLFKEN  190 (523)
Q Consensus       153 -----------------~~~~~~~~~~~~~~~~~-------------------------~~g~~~~~~~~~~l~~ll~~~  190 (523)
                                       .+++++++.+.-.....                         .......+++.+++.++++++
T Consensus       143 ~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~a  222 (285)
T 4htf_A          143 HAVLEWVADPRSVLQTLWSVLRPGGVLSLMFYNAHGLLMHNMVAGNFDYVQAGMPKKKKRTLSPDYPRDPTQVYLWLEEA  222 (285)
T ss_dssp             ESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEEBHHHHHHHHHHTTCHHHHHTTCCCC----CCCSCCBCHHHHHHHHHHT
T ss_pred             CchhhcccCHHHHHHHHHHHcCCCeEEEEEEeCCchHHHHHHHhcCHHHHhhhccccccccCCCCCCCCHHHHHHHHHHC
Confidence                             22333443332110000                         000011346889999999999


Q ss_pred             CCcEEEEEe
Q 009871          191 GFDVEELGL  199 (523)
Q Consensus       191 Gf~~~~~~~  199 (523)
                      ||+++++..
T Consensus       223 Gf~v~~~~~  231 (285)
T 4htf_A          223 GWQIMGKTG  231 (285)
T ss_dssp             TCEEEEEEE
T ss_pred             CCceeeeee
Confidence            999876653

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=99.45  E-value=2.2e-13  Score=130.44  Aligned_cols=124  Identities=16%  Similarity=0.173  Sum_probs=88.6

Q ss_pred             hhhhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCC--CcEEEEEeeccCCccCCCCCCC
Q 009871           68 GRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQISPS  145 (523)
Q Consensus        68 ~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~  145 (523)
                      ...+...++.+|||||||+|..+..+++.. +.+|+|+|+|+.|++.|+++....+  .++++.++|+.++    ++ ++
T Consensus        29 ~~~~~~~~~~~VLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~----~~-~~  102 (256)
T 1nkv_A           29 GRVLRMKPGTRILDLGSGSGEMLCTWARDH-GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGY----VA-NE  102 (256)
T ss_dssp             HHHTCCCTTCEEEEETCTTCHHHHHHHHHT-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTC----CC-SS
T ss_pred             HHhcCCCCCCEEEEECCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhC----Cc-CC
Confidence            344455678899999999999999999886 6689999999999999998764332  4799999999876    45 78


Q ss_pred             ceeEEEE---c-cccccceeeec-ceEEecCCeEEE-------------------------eeCHHHHHHHHHhCCCcEE
Q 009871          146 SIDIVTM---E-RLTGKDQKISE-NFYVRGDGTRAF-------------------------YFSNDFLTSLFKENGFDVE  195 (523)
Q Consensus       146 ~fD~V~~---~-~~~~~~~~~~~-~~~~~~~g~~~~-------------------------~~~~~~l~~ll~~~Gf~~~  195 (523)
                      +||+|++   . .+......+.. ...++++|.+++                         +++.+++.++++++||.++
T Consensus       103 ~fD~V~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~  182 (256)
T 1nkv_A          103 KCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQACGVSSTSDFLTLPGLVGAFDDLGYDVV  182 (256)
T ss_dssp             CEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEEEETTCCSSHHHHHTTTCSCGGGSCCHHHHHHHHHTTTBCCC
T ss_pred             CCCEEEECCChHhcCCHHHHHHHHHHHcCCCeEEEEecCcccCCCChHHHHHHHhcccccccCCHHHHHHHHHHCCCeeE
Confidence            9999998   0 01000000000 013444444332                         3467899999999999976


Q ss_pred             EE
Q 009871          196 EL  197 (523)
Q Consensus       196 ~~  197 (523)
                      .+
T Consensus       183 ~~  184 (256)
T 1nkv_A          183 EM  184 (256)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=99.45  E-value=1.4e-12  Score=131.83  Aligned_cols=149  Identities=15%  Similarity=0.131  Sum_probs=105.7

Q ss_pred             eEEEEEEcCceEEEEEecccccccCCCcccccchhHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcC-CCEEEE
Q 009871          285 EMIEVNLRDRSFKIEVLSKEYQHTCRSTGLMLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGS-ADLVVA  363 (523)
Q Consensus       285 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~G~~~W~~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~-~~~V~~  363 (523)
                      ....+.+.+..+++...++.+....      +..++    +++.......++.+|||+|||+|.++..++..+ ..+|++
T Consensus       182 ~~~~~~~~~~~~~~~~~pg~Fs~~~------~d~~~----~~ll~~l~~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~g  251 (375)
T 4dcm_A          182 QTVSWKLEGTDWTIHNHANVFSRTG------LDIGA----RFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVF  251 (375)
T ss_dssp             SCEEEEETTTTEEEEECTTCTTCSS------CCHHH----HHHHHTCCCSCCSEEEEETCTTCHHHHHHHHHCTTCEEEE
T ss_pred             CceEEEecCCceEEEeCCCcccCCc------ccHHH----HHHHHhCcccCCCeEEEEeCcchHHHHHHHHHCCCCEEEE
Confidence            3456778888899987776654322      22333    334444444456899999999999999998886 569999


Q ss_pred             EcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCccEEEEccccCCC-----CChHHHHHHHHH
Q 009871          364 TDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIP-----EAILPLFATAKE  438 (523)
Q Consensus       364 ~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~-----~~~~~l~~~l~~  438 (523)
                      +|+|+.+++.+++|+..|++.. ..++.+...|..+        .+++++||+|+++.+++..     .....+++.+.+
T Consensus       252 vD~s~~al~~Ar~n~~~ngl~~-~~~v~~~~~D~~~--------~~~~~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~  322 (375)
T 4dcm_A          252 VDESPMAVASSRLNVETNMPEA-LDRCEFMINNALS--------GVEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARR  322 (375)
T ss_dssp             EESCHHHHHHHHHHHHHHCGGG-GGGEEEEECSTTT--------TCCTTCEEEEEECCCC-------CCHHHHHHHHHHH
T ss_pred             EECcHHHHHHHHHHHHHcCCCc-CceEEEEechhhc--------cCCCCCeeEEEECCCcccCcccCHHHHHHHHHHHHH
Confidence            9999999999999999988641 1235555444433        2345689999999887642     233478999999


Q ss_pred             HhhccCCCCCCCCCcEEEEEEee
Q 009871          439 LTASSNKSLREDQQPAFILCHIF  461 (523)
Q Consensus       439 ll~~~~~~~~~~~~g~~~l~~~~  461 (523)
                      +|         +|||.++++...
T Consensus       323 ~L---------kpgG~l~iv~n~  336 (375)
T 4dcm_A          323 CL---------KINGELYIVANR  336 (375)
T ss_dssp             HE---------EEEEEEEEEEET
T ss_pred             hC---------CCCcEEEEEEEC
Confidence            99         679999987644

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=99.45  E-value=1.9e-12  Score=119.63  Aligned_cols=125  Identities=6%  Similarity=0.059  Sum_probs=98.3

Q ss_pred             CCCCCCeEEEECCCccHHHHHHHhcC-CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhc
Q 009871          332 TIVAGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEEN  410 (523)
Q Consensus       332 ~~~~~~~VLElG~G~G~l~~~~a~~~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~  410 (523)
                      ...++.+|||+|||+|.++..++..+ ..+|+++|+++.+++.+++|+..++.    .++.+...|+.+.  ..     .
T Consensus        37 ~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~----~~v~~~~~d~~~~--~~-----~  105 (204)
T 3e05_A           37 RLQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVA----RNVTLVEAFAPEG--LD-----D  105 (204)
T ss_dssp             TCCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTC----TTEEEEECCTTTT--CT-----T
T ss_pred             CCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC----CcEEEEeCChhhh--hh-----c
Confidence            44578899999999999988888886 46999999999999999999998876    3566666665432  11     1


Q ss_pred             CCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhHHHHHHHHcCCEE
Q 009871          411 NEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRL  480 (523)
Q Consensus       411 ~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~~~~~~~~gf~~  480 (523)
                      ..+||+|++..+.+   ....+++.+.++|         +|||.+++..... .....+.+.+++.||.+
T Consensus       106 ~~~~D~i~~~~~~~---~~~~~l~~~~~~L---------kpgG~l~~~~~~~-~~~~~~~~~l~~~g~~~  162 (204)
T 3e05_A          106 LPDPDRVFIGGSGG---MLEEIIDAVDRRL---------KSEGVIVLNAVTL-DTLTKAVEFLEDHGYMV  162 (204)
T ss_dssp             SCCCSEEEESCCTT---CHHHHHHHHHHHC---------CTTCEEEEEECBH-HHHHHHHHHHHHTTCEE
T ss_pred             CCCCCEEEECCCCc---CHHHHHHHHHHhc---------CCCeEEEEEeccc-ccHHHHHHHHHHCCCce
Confidence            25799999986654   7889999999999         7799999876542 23456788889999854

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=99.45  E-value=5e-13  Score=127.79  Aligned_cols=135  Identities=8%  Similarity=0.004  Sum_probs=105.1

Q ss_pred             cCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhh
Q 009871          329 RNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKE  408 (523)
Q Consensus       329 ~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~  408 (523)
                      ......++.+|||||||+|.++..++..+..+|+++|+++.+++.+++++..+      .++.+...|+.+.       +
T Consensus        87 ~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~------~~~~~~~~d~~~~-------~  153 (254)
T 1xtp_A           87 ASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGM------PVGKFILASMETA-------T  153 (254)
T ss_dssp             HTSTTCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTS------SEEEEEESCGGGC-------C
T ss_pred             HhhcccCCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHHHHHHHhccC------CceEEEEccHHHC-------C
Confidence            33344578899999999998888888877678999999999999999887543      3566666655432       2


Q ss_pred             hcCCCccEEEEccccCCC--CChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec--------------CCChhHHHHH
Q 009871          409 ENNEGFEVILGTDVSYIP--EAILPLFATAKELTASSNKSLREDQQPAFILCHIFR--------------QVDEPSMLSA  472 (523)
Q Consensus       409 ~~~~~fD~Ii~~d~~y~~--~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r--------------~~~~~~~~~~  472 (523)
                      +++++||+|++..++++.  .....+++.+.++|         +|||.+++.....              ..+...+.+.
T Consensus       154 ~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L---------kpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (254)
T 1xtp_A          154 LPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQAL---------TPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRL  224 (254)
T ss_dssp             CCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHE---------EEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHH
T ss_pred             CCCCCeEEEEEcchhhhCCHHHHHHHHHHHHHhc---------CCCeEEEEEecCCCcccceecccCCcccCCHHHHHHH
Confidence            345689999999999887  55889999999999         6799999876421              1234678888


Q ss_pred             HHHcCCEEEEEcC
Q 009871          473 ATQCGFRLVDKWP  485 (523)
Q Consensus       473 ~~~~gf~~~~~~~  485 (523)
                      ++++||++.++..
T Consensus       225 l~~aGf~~~~~~~  237 (254)
T 1xtp_A          225 FNESGVRVVKEAF  237 (254)
T ss_dssp             HHHHTCCEEEEEE
T ss_pred             HHHCCCEEEEeee
Confidence            9999999988765

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=99.45  E-value=1.4e-12  Score=120.74  Aligned_cols=145  Identities=14%  Similarity=0.122  Sum_probs=99.8

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEEE-
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM-  152 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~-  152 (523)
                      .++.+|||+|||+|..+..++.. ++.+|+|+|+|+.|++.|+++......++++.++|+.++    ++++++||+|++ 
T Consensus        22 ~~~~~vLDiGcG~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~----~~~~~~fD~v~~~   96 (209)
T 2p8j_A           22 NLDKTVLDCGAGGDLPPLSIFVE-DGYKTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKL----PFKDESMSFVYSY   96 (209)
T ss_dssp             SSCSEEEEESCCSSSCTHHHHHH-TTCEEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSC----CSCTTCEEEEEEC
T ss_pred             CCCCEEEEECCCCCHHHHHHHHh-CCCEEEEEECCHHHHHHHHHHHHhcCCceEEEECchhhC----CCCCCceeEEEEc
Confidence            46789999999999985544433 367899999999999999987654446789999999877    667889999998 


Q ss_pred             ------------------ccccccceeeecceEEe---------------------cCCeEEEeeCHHHHHHHHHhCCCc
Q 009871          153 ------------------ERLTGKDQKISENFYVR---------------------GDGTRAFYFSNDFLTSLFKENGFD  193 (523)
Q Consensus       153 ------------------~~~~~~~~~~~~~~~~~---------------------~~g~~~~~~~~~~l~~ll~~~Gf~  193 (523)
                                        .+.+++++.+.-..+..                     ..+....+++.+++.++|...||.
T Consensus        97 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~  176 (209)
T 2p8j_A           97 GTIFHMRKNDVKEAIDEIKRVLKPGGLACINFLTTKDERYNKGEKIGEGEFLQLERGEKVIHSYVSLEEADKYFKDMKVL  176 (209)
T ss_dssp             SCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEETTSTTTTCSEEEETTEEEECC-CCCEEEEEECHHHHHHTTTTSEEE
T ss_pred             ChHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEecccchhccchhhhccccceeccCCCceeEEecCHHHHHHHHhhcCce
Confidence                              22233343332111111                     111233577999999999999987


Q ss_pred             EEEEEeEeeeeeecccCccceeEEEEEEEEecCC
Q 009871          194 VEELGLCCKQVENRARELVMNRRWVQAVFCSSGG  227 (523)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~  227 (523)
                      ..+.....    ...++..+.+.|....+.+..+
T Consensus       177 ~~~~~~~~----~~~~g~~~~~~f~~~~~~~~~~  206 (209)
T 2p8j_A          177 FKEDRVVE----RINDGLKIKQGYVDYIAEKFSK  206 (209)
T ss_dssp             EEEEEEEE----EEETTEEEEEEEEEEEEECCCC
T ss_pred             eeeeeeee----hhhcCCcccceeeeeehhhhhh
Confidence            76543221    1244555567888877777643

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=99.44  E-value=1.6e-12  Score=120.22  Aligned_cols=128  Identities=9%  Similarity=0.045  Sum_probs=98.4

Q ss_pred             CCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcC
Q 009871          332 TIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENN  411 (523)
Q Consensus       332 ~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~  411 (523)
                      ...++.+|||||||+|.++..++.. ..+|+++|+++.+++.+++|++.++..   .++.+...|..+.  +.     ..
T Consensus        52 ~~~~~~~vLDlGcG~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~~~~~~g~~---~~v~~~~~d~~~~--~~-----~~  120 (204)
T 3njr_A           52 APRRGELLWDIGGGSGSVSVEWCLA-GGRAITIEPRADRIENIQKNIDTYGLS---PRMRAVQGTAPAA--LA-----DL  120 (204)
T ss_dssp             CCCTTCEEEEETCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCT---TTEEEEESCTTGG--GT-----TS
T ss_pred             CCCCCCEEEEecCCCCHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCC---CCEEEEeCchhhh--cc-----cC
Confidence            3457889999999999888888888 678999999999999999999998774   3566665554321  11     12


Q ss_pred             CCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhHHHHHHHHcCCEEEEEcC
Q 009871          412 EGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLVDKWP  485 (523)
Q Consensus       412 ~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~~~~~~~~gf~~~~~~~  485 (523)
                      ..||+|++...+    ... +++.+.++|         +|||.+++.... ..+...+.+.+++.|+++..+..
T Consensus       121 ~~~D~v~~~~~~----~~~-~l~~~~~~L---------kpgG~lv~~~~~-~~~~~~~~~~l~~~g~~i~~i~~  179 (204)
T 3njr_A          121 PLPEAVFIGGGG----SQA-LYDRLWEWL---------APGTRIVANAVT-LESETLLTQLHARHGGQLLRIDI  179 (204)
T ss_dssp             CCCSEEEECSCC----CHH-HHHHHHHHS---------CTTCEEEEEECS-HHHHHHHHHHHHHHCSEEEEEEE
T ss_pred             CCCCEEEECCcc----cHH-HHHHHHHhc---------CCCcEEEEEecC-cccHHHHHHHHHhCCCcEEEEEe
Confidence            479999987533    455 999999999         779999987654 23345678888999999888643

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=99.44  E-value=8e-13  Score=125.38  Aligned_cols=136  Identities=15%  Similarity=0.125  Sum_probs=105.5

Q ss_pred             HHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCc
Q 009871          323 MAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDH  402 (523)
Q Consensus       323 la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~  402 (523)
                      +.+++....  .++.+|||||||+|.++..++..+ .+|+++|+++.+++.++++..       ..++.+...|..+.  
T Consensus        43 ~~~~l~~~~--~~~~~vLDiG~G~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~-------~~~~~~~~~d~~~~--  110 (242)
T 3l8d_A           43 IIPFFEQYV--KKEAEVLDVGCGDGYGTYKLSRTG-YKAVGVDISEVMIQKGKERGE-------GPDLSFIKGDLSSL--  110 (242)
T ss_dssp             HHHHHHHHS--CTTCEEEEETCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHTTTC-------BTTEEEEECBTTBC--
T ss_pred             HHHHHHHHc--CCCCeEEEEcCCCCHHHHHHHHcC-CeEEEEECCHHHHHHHHhhcc-------cCCceEEEcchhcC--
Confidence            344444433  267899999999998888888875 489999999999999987641       14567776666543  


Q ss_pred             chhhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecC-------------------
Q 009871          403 IEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ-------------------  463 (523)
Q Consensus       403 ~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~-------------------  463 (523)
                           ++++++||+|++..++++......+++.+.++|         +|||.+++......                   
T Consensus       111 -----~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L---------~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~  176 (242)
T 3l8d_A          111 -----PFENEQFEAIMAINSLEWTEEPLRALNEIKRVL---------KSDGYACIAILGPTAKPRENSYPRLYGKDVVCN  176 (242)
T ss_dssp             -----SSCTTCEEEEEEESCTTSSSCHHHHHHHHHHHE---------EEEEEEEEEEECTTCGGGGGGGGGGGTCCCSSC
T ss_pred             -----CCCCCCccEEEEcChHhhccCHHHHHHHHHHHh---------CCCeEEEEEEcCCcchhhhhhhhhhcccccccc
Confidence                 234579999999999999999999999999999         67999998874321                   


Q ss_pred             -CChhHHHHHHHHcCCEEEEEc
Q 009871          464 -VDEPSMLSAATQCGFRLVDKW  484 (523)
Q Consensus       464 -~~~~~~~~~~~~~gf~~~~~~  484 (523)
                       .+...+.+.++++||++.+..
T Consensus       177 ~~~~~~~~~~l~~~Gf~~~~~~  198 (242)
T 3l8d_A          177 TMMPWEFEQLVKEQGFKVVDGI  198 (242)
T ss_dssp             CCCHHHHHHHHHHTTEEEEEEE
T ss_pred             CCCHHHHHHHHHHcCCEEEEee
Confidence             233567888999999998864

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=99.44  E-value=1.3e-12  Score=123.87  Aligned_cols=79  Identities=16%  Similarity=0.162  Sum_probs=65.8

Q ss_pred             HhhhhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCc
Q 009871           67 WGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSS  146 (523)
Q Consensus        67 ~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  146 (523)
                      +..+++..++.+|||||||+|..+..+++... .+|+|+|+|+.|++.|+++...  .++++.++|+..+    ++++++
T Consensus        35 l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~--~~~~~~~~d~~~~----~~~~~~  107 (243)
T 3bkw_A           35 LRAMLPEVGGLRIVDLGCGFGWFCRWAHEHGA-SYVLGLDLSEKMLARARAAGPD--TGITYERADLDKL----HLPQDS  107 (243)
T ss_dssp             HHHHSCCCTTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHTSCS--SSEEEEECCGGGC----CCCTTC
T ss_pred             HHHhccccCCCEEEEEcCcCCHHHHHHHHCCC-CeEEEEcCCHHHHHHHHHhccc--CCceEEEcChhhc----cCCCCC
Confidence            34455556788999999999999999998832 2899999999999999987643  4699999999876    566889


Q ss_pred             eeEEEE
Q 009871          147 IDIVTM  152 (523)
Q Consensus       147 fD~V~~  152 (523)
                      ||+|++
T Consensus       108 fD~v~~  113 (243)
T 3bkw_A          108 FDLAYS  113 (243)
T ss_dssp             EEEEEE
T ss_pred             ceEEEE
Confidence            999999

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=99.44  E-value=2.5e-13  Score=126.57  Aligned_cols=129  Identities=14%  Similarity=0.195  Sum_probs=92.4

Q ss_pred             HhhhhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCC-CcEEEEEeeccCCccCCCCCCC
Q 009871           67 WGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQISPS  145 (523)
Q Consensus        67 ~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~  145 (523)
                      |.+.++ .++.+|||||||+|.++..+++.+|+.+|+|+|+|+.|++.|+++....+ .++.++++|+.++  +..++++
T Consensus        34 ~~~~f~-~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~  110 (214)
T 1yzh_A           34 WRDLFG-NDNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDL--TDYFEDG  110 (214)
T ss_dssp             HHHHHT-SCCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCG--GGTSCTT
T ss_pred             HHHHcC-CCCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHH--HhhcCCC
Confidence            333444 46789999999999999999999988999999999999999999764332 5899999999864  2226678


Q ss_pred             ceeEEEEc---ccccc---------ceeeec-ceEEecCCeEEEee----CHHHHHHHHHhCCCcEEEEE
Q 009871          146 SIDIVTME---RLTGK---------DQKISE-NFYVRGDGTRAFYF----SNDFLTSLFKENGFDVEELG  198 (523)
Q Consensus       146 ~fD~V~~~---~~~~~---------~~~~~~-~~~~~~~g~~~~~~----~~~~l~~ll~~~Gf~~~~~~  198 (523)
                      +||+|++.   ...+.         ...+.. ...++++|.+.+..    ..+++.+++.++||..+.+.
T Consensus       111 ~~D~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~  180 (214)
T 1yzh_A          111 EIDRLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNRGLFEYSLVSFSQYGMKLNGVW  180 (214)
T ss_dssp             CCSEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHHTCEEEEEE
T ss_pred             CCCEEEEECCCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHCCCeeeecc
Confidence            99999991   11000         000000 12578888877644    23566788888999876553

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=99.44  E-value=1.1e-12  Score=122.77  Aligned_cols=124  Identities=11%  Similarity=0.091  Sum_probs=86.4

Q ss_pred             hhhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCcee
Q 009871           69 RYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSID  148 (523)
Q Consensus        69 ~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD  148 (523)
                      +.+....+.+|||||||+|.++..+++.  +.+|+|+|+|+.|++.|+++     .++.+.++|+.++......++++||
T Consensus        46 ~~~~~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~-----~~~~~~~~~~~~~~~~~~~~~~~fD  118 (227)
T 3e8s_A           46 LAILGRQPERVLDLGCGEGWLLRALADR--GIEAVGVDGDRTLVDAARAA-----GAGEVHLASYAQLAEAKVPVGKDYD  118 (227)
T ss_dssp             HHHHHTCCSEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHT-----CSSCEEECCHHHHHTTCSCCCCCEE
T ss_pred             HHhhcCCCCEEEEeCCCCCHHHHHHHHC--CCEEEEEcCCHHHHHHHHHh-----cccccchhhHHhhcccccccCCCcc
Confidence            3333356799999999999999999988  66899999999999999987     3467888887754221123345699


Q ss_pred             EEEE----------------ccccccceeeecceE--------------Ee------c---CCeEEEeeCHHHHHHHHHh
Q 009871          149 IVTM----------------ERLTGKDQKISENFY--------------VR------G---DGTRAFYFSNDFLTSLFKE  189 (523)
Q Consensus       149 ~V~~----------------~~~~~~~~~~~~~~~--------------~~------~---~g~~~~~~~~~~l~~ll~~  189 (523)
                      +|++                .+.+++++.+.-...              ..      .   .+...++++.+++.++|++
T Consensus       119 ~v~~~~~l~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  198 (227)
T 3e8s_A          119 LICANFALLHQDIIELLSAMRTLLVPGGALVIQTLHPWSVADGDYQDGWREESFAGFAGDWQPMPWYFRTLASWLNALDM  198 (227)
T ss_dssp             EEEEESCCCSSCCHHHHHHHHHTEEEEEEEEEEECCTTTTCTTCCSCEEEEECCTTSSSCCCCEEEEECCHHHHHHHHHH
T ss_pred             EEEECchhhhhhHHHHHHHHHHHhCCCeEEEEEecCccccCccccccccchhhhhccccCcccceEEEecHHHHHHHHHH
Confidence            9999                223333333321000              00      0   1234456699999999999


Q ss_pred             CCCcEEEEEe
Q 009871          190 NGFDVEELGL  199 (523)
Q Consensus       190 ~Gf~~~~~~~  199 (523)
                      +||+++++..
T Consensus       199 aGf~~~~~~~  208 (227)
T 3e8s_A          199 AGLRLVSLQE  208 (227)
T ss_dssp             TTEEEEEEEC
T ss_pred             cCCeEEEEec
Confidence            9999987754

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=99.44  E-value=2.4e-13  Score=136.20  Aligned_cols=111  Identities=15%  Similarity=0.126  Sum_probs=89.9

Q ss_pred             HHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcch
Q 009871          325 AVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIE  404 (523)
Q Consensus       325 ~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~  404 (523)
                      +.|.++...++|++|||||||+|.++.++|+.|+.+|+++|.|+ +++.|+++++.|++.   .+|.+...+..+.+   
T Consensus        73 ~Ai~~~~~~~~~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~-~~~~a~~~~~~n~~~---~~i~~i~~~~~~~~---  145 (376)
T 4hc4_A           73 LGILRNWAALRGKTVLDVGAGTGILSIFCAQAGARRVYAVEASA-IWQQAREVVRFNGLE---DRVHVLPGPVETVE---  145 (376)
T ss_dssp             HHHHTTHHHHTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-THHHHHHHHHHTTCT---TTEEEEESCTTTCC---
T ss_pred             HHHHhCHHhcCCCEEEEeCCCccHHHHHHHHhCCCEEEEEeChH-HHHHHHHHHHHcCCC---ceEEEEeeeeeeec---
Confidence            45666666789999999999999888888888999999999986 889999999999986   67887766654431   


Q ss_pred             hhhhhcCCCccEEEE---ccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEE
Q 009871          405 AIKEENNEGFEVILG---TDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFI  456 (523)
Q Consensus       405 ~~~~~~~~~fD~Ii~---~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~  456 (523)
                          + +++||+||+   ...+.+...++.++....++|         +|+|.++
T Consensus       146 ----l-pe~~DvivsE~~~~~l~~e~~l~~~l~a~~r~L---------kp~G~~i  186 (376)
T 4hc4_A          146 ----L-PEQVDAIVSEWMGYGLLHESMLSSVLHARTKWL---------KEGGLLL  186 (376)
T ss_dssp             ----C-SSCEEEEECCCCBTTBTTTCSHHHHHHHHHHHE---------EEEEEEE
T ss_pred             ----C-CccccEEEeecccccccccchhhhHHHHHHhhC---------CCCceEC
Confidence                2 468999998   345666788999999999999         5576655

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=99.43  E-value=5.6e-13  Score=126.15  Aligned_cols=68  Identities=12%  Similarity=0.187  Sum_probs=59.2

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM  152 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~  152 (523)
                      .++.+|||||||+|.++..+++.++  +|+|+|+|+.|++.|+++.    .+++++++|+.++    ++ +++||+|+|
T Consensus        39 ~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~~D~s~~~~~~a~~~~----~~~~~~~~d~~~~----~~-~~~~D~v~~  106 (239)
T 3bxo_A           39 PEASSLLDVACGTGTHLEHFTKEFG--DTAGLELSEDMLTHARKRL----PDATLHQGDMRDF----RL-GRKFSAVVS  106 (239)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHHS--EEEEEESCHHHHHHHHHHC----TTCEEEECCTTTC----CC-SSCEEEEEE
T ss_pred             CCCCeEEEecccCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhC----CCCEEEECCHHHc----cc-CCCCcEEEE
Confidence            4678999999999999999999864  7999999999999999874    4589999999876    44 678999995

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=99.43  E-value=1.5e-12  Score=123.05  Aligned_cols=142  Identities=18%  Similarity=0.131  Sum_probs=108.0

Q ss_pred             HHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCC
Q 009871          322 LMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRD  401 (523)
Q Consensus       322 ~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~  401 (523)
                      .+.+++....  .++.+|||+|||+|.++..++..+ .+|+++|+++.+++.+++++..++..   .++.+...|+.+..
T Consensus        55 ~l~~~~~~~~--~~~~~vLDiGcG~G~~~~~l~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~---~~v~~~~~d~~~~~  128 (235)
T 3lcc_A           55 LIVHLVDTSS--LPLGRALVPGCGGGHDVVAMASPE-RFVVGLDISESALAKANETYGSSPKA---EYFSFVKEDVFTWR  128 (235)
T ss_dssp             HHHHHHHTTC--SCCEEEEEETCTTCHHHHHHCBTT-EEEEEECSCHHHHHHHHHHHTTSGGG---GGEEEECCCTTTCC
T ss_pred             HHHHHHHhcC--CCCCCEEEeCCCCCHHHHHHHhCC-CeEEEEECCHHHHHHHHHHhhccCCC---cceEEEECchhcCC
Confidence            4555554432  244599999999998887776654 57999999999999999998764332   46777777766531


Q ss_pred             cchhhhhhcCCCccEEEEccccCCCC--ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec---------CCChhHHH
Q 009871          402 HIEAIKEENNEGFEVILGTDVSYIPE--AILPLFATAKELTASSNKSLREDQQPAFILCHIFR---------QVDEPSML  470 (523)
Q Consensus       402 ~~~~~~~~~~~~fD~Ii~~d~~y~~~--~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r---------~~~~~~~~  470 (523)
                              +..+||+|+++.++++..  ....+++.+.++|         +|||.+++.....         ..+...+.
T Consensus       129 --------~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L---------kpgG~l~~~~~~~~~~~~~~~~~~~~~~~~  191 (235)
T 3lcc_A          129 --------PTELFDLIFDYVFFCAIEPEMRPAWAKSMYELL---------KPDGELITLMYPITDHVGGPPYKVDVSTFE  191 (235)
T ss_dssp             --------CSSCEEEEEEESSTTTSCGGGHHHHHHHHHHHE---------EEEEEEEEEECCCSCCCSCSSCCCCHHHHH
T ss_pred             --------CCCCeeEEEEChhhhcCCHHHHHHHHHHHHHHC---------CCCcEEEEEEecccccCCCCCccCCHHHHH
Confidence                    245899999999998866  8899999999999         6799988765432         13456788


Q ss_pred             HHHHHcCCEEEEEcCC
Q 009871          471 SAATQCGFRLVDKWPS  486 (523)
Q Consensus       471 ~~~~~~gf~~~~~~~~  486 (523)
                      +.++++||++.++...
T Consensus       192 ~~l~~~Gf~~~~~~~~  207 (235)
T 3lcc_A          192 EVLVPIGFKAVSVEEN  207 (235)
T ss_dssp             HHHGGGTEEEEEEEEC
T ss_pred             HHHHHcCCeEEEEEec
Confidence            8899999999887553

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=99.43  E-value=9.9e-13  Score=122.12  Aligned_cols=133  Identities=16%  Similarity=0.160  Sum_probs=101.5

Q ss_pred             HHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCC
Q 009871          322 LMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRD  401 (523)
Q Consensus       322 ~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~  401 (523)
                      .+..++...   .++.+|||||||+|.++..++..+ .+|+++|+++.+++.+++++.          +.+...+..+. 
T Consensus        33 ~~~~~~~~~---~~~~~vLDiGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~----------~~~~~~d~~~~-   97 (211)
T 3e23_A           33 TLTKFLGEL---PAGAKILELGCGAGYQAEAMLAAG-FDVDATDGSPELAAEASRRLG----------RPVRTMLFHQL-   97 (211)
T ss_dssp             HHHHHHTTS---CTTCEEEESSCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHT----------SCCEECCGGGC-
T ss_pred             HHHHHHHhc---CCCCcEEEECCCCCHHHHHHHHcC-CeEEEECCCHHHHHHHHHhcC----------CceEEeeeccC-
Confidence            344554332   367899999999998888888875 489999999999999998871          12222232221 


Q ss_pred             cchhhhhhcCCCccEEEEccccCCCC--ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecC-------------CCh
Q 009871          402 HIEAIKEENNEGFEVILGTDVSYIPE--AILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ-------------VDE  466 (523)
Q Consensus       402 ~~~~~~~~~~~~fD~Ii~~d~~y~~~--~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~-------------~~~  466 (523)
                            + ..++||+|+++.++++..  ....+++.+.++|         +|||.++++.....             .+.
T Consensus        98 ------~-~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L---------kpgG~l~~~~~~~~~~~~~~~~~~~~~~~~  161 (211)
T 3e23_A           98 ------D-AIDAYDAVWAHACLLHVPRDELADVLKLIWRAL---------KPGGLFYASYKSGEGEGRDKLARYYNYPSE  161 (211)
T ss_dssp             ------C-CCSCEEEEEECSCGGGSCHHHHHHHHHHHHHHE---------EEEEEEEEEEECCSSCEECTTSCEECCCCH
T ss_pred             ------C-CCCcEEEEEecCchhhcCHHHHHHHHHHHHHhc---------CCCcEEEEEEcCCCcccccccchhccCCCH
Confidence                  1 357899999999998876  7889999999999         67999998865532             355


Q ss_pred             hHHHHHHHHcC-CEEEEEcC
Q 009871          467 PSMLSAATQCG-FRLVDKWP  485 (523)
Q Consensus       467 ~~~~~~~~~~g-f~~~~~~~  485 (523)
                      ..+.+.++++| |++.++..
T Consensus       162 ~~~~~~l~~aG~f~~~~~~~  181 (211)
T 3e23_A          162 EWLRARYAEAGTWASVAVES  181 (211)
T ss_dssp             HHHHHHHHHHCCCSEEEEEE
T ss_pred             HHHHHHHHhCCCcEEEEEEe
Confidence            67889999999 99988754

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=99.43  E-value=1.2e-13  Score=133.09  Aligned_cols=141  Identities=11%  Similarity=0.039  Sum_probs=100.8

Q ss_pred             CCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCC-------------------------C
Q 009871          333 IVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPF-------------------------L  387 (523)
Q Consensus       333 ~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~-------------------------~  387 (523)
                      ..++.+|||||||+|.++.++++.++.+|+++|+|+.|++.|++++..+.....                         .
T Consensus        53 ~~~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~  132 (263)
T 2a14_A           53 GLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLR  132 (263)
T ss_dssp             SCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred             CCCCceEEEeCCCccHHHHHHHHhhhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHH
Confidence            457889999999999777777777777899999999999999998876532100                         0


Q ss_pred             CceE-EEeeecCCCCcchhhhhhcCCCccEEEEccccCC-C---CChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec
Q 009871          388 AKLI-TKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYI-P---EAILPLFATAKELTASSNKSLREDQQPAFILCHIFR  462 (523)
Q Consensus       388 ~~v~-~~~ldw~~~~~~~~~~~~~~~~fD~Ii~~d~~y~-~---~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r  462 (523)
                      ..+. +...|..+...+   .+...++||+|+++-++++ .   +.+..+++.+.++|         +|||.++++....
T Consensus       133 ~~i~~~~~~D~~~~~~~---~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~L---------KPGG~li~~~~~~  200 (263)
T 2a14_A          133 AAVKRVLKCDVHLGNPL---APAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLL---------KPGGHLVTTVTLR  200 (263)
T ss_dssp             HHEEEEEECCTTSSSTT---TTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTE---------EEEEEEEEEEESS
T ss_pred             hhhheEEeccccCCCCC---CccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHc---------CCCcEEEEEEeec
Confidence            1122 444444432111   1112458999999988865 2   34567888888999         7799999986322


Q ss_pred             --------------CCChhHHHHHHHHcCCEEEEEcC
Q 009871          463 --------------QVDEPSMLSAATQCGFRLVDKWP  485 (523)
Q Consensus       463 --------------~~~~~~~~~~~~~~gf~~~~~~~  485 (523)
                                    ..+.+.+.+.++++||++.++..
T Consensus       201 ~~~~~~g~~~~~~~~~~~~~l~~~l~~aGF~i~~~~~  237 (263)
T 2a14_A          201 LPSYMVGKREFSCVALEKGEVEQAVLDAGFDIEQLLH  237 (263)
T ss_dssp             CCEEEETTEEEECCCCCHHHHHHHHHHTTEEEEEEEE
T ss_pred             CccceeCCeEeeccccCHHHHHHHHHHCCCEEEEEee
Confidence                          13566788999999999988865

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.43  E-value=1e-12  Score=125.58  Aligned_cols=103  Identities=17%  Similarity=0.339  Sum_probs=72.8

Q ss_pred             hHHHHHHHHhcccccccchhhhHHHHhhhhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhcccc
Q 009871           42 KKYWDLFYKRHQDRFFKDRHYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDF  121 (523)
Q Consensus        42 ~~~Wd~~y~~~~~~f~~~~~~l~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~  121 (523)
                      ..||+.+|............++...+.. ....++.+|||+|||+|..+..+++.  +.+|+|+|+|+.|++.|+++...
T Consensus         9 a~~yd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~   85 (252)
T 1wzn_A            9 AEYYDTIYRRRIERVKAEIDFVEEIFKE-DAKREVRRVLDLACGTGIPTLELAER--GYEVVGLDLHEEMLRVARRKAKE   85 (252)
T ss_dssp             GGGHHHHTHHHHHTHHHHHHHHHHHHHH-TCSSCCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcchhhhHHHHHHHHHHHHH-hcccCCCEEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHh
Confidence            4566666554221111112233322222 22246789999999999999999987  56899999999999999998754


Q ss_pred             CCCcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871          122 TETRVSTFVCDLISDDLSRQISPSSIDIVTM  152 (523)
Q Consensus       122 ~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~  152 (523)
                      .+.++.++++|+.++    ++ +++||+|++
T Consensus        86 ~~~~v~~~~~d~~~~----~~-~~~fD~v~~  111 (252)
T 1wzn_A           86 RNLKIEFLQGDVLEI----AF-KNEFDAVTM  111 (252)
T ss_dssp             TTCCCEEEESCGGGC----CC-CSCEEEEEE
T ss_pred             cCCceEEEECChhhc----cc-CCCccEEEE
Confidence            455799999999876    33 368999996

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=99.42  E-value=3.7e-13  Score=125.81  Aligned_cols=111  Identities=25%  Similarity=0.331  Sum_probs=85.4

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEEEc
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTME  153 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~  153 (523)
                      .++.+|||||||+|.++..+++.  +.+|+|+|+|+.|++.|+++..   .+++++++|+.++    +++ ++||+|++.
T Consensus        44 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~---~~~~~~~~d~~~~----~~~-~~fD~v~~~  113 (220)
T 3hnr_A           44 KSFGNVLEFGVGTGNLTNKLLLA--GRTVYGIEPSREMRMIAKEKLP---KEFSITEGDFLSF----EVP-TSIDTIVST  113 (220)
T ss_dssp             TCCSEEEEECCTTSHHHHHHHHT--TCEEEEECSCHHHHHHHHHHSC---TTCCEESCCSSSC----CCC-SCCSEEEEE
T ss_pred             cCCCeEEEeCCCCCHHHHHHHhC--CCeEEEEeCCHHHHHHHHHhCC---CceEEEeCChhhc----CCC-CCeEEEEEC
Confidence            57889999999999999999988  6789999999999999998764   5789999999876    555 899999990


Q ss_pred             ----c--------ccccceeeecceEEecCCeEEE----------------------------------eeCHHHHHHHH
Q 009871          154 ----R--------LTGKDQKISENFYVRGDGTRAF----------------------------------YFSNDFLTSLF  187 (523)
Q Consensus       154 ----~--------~~~~~~~~~~~~~~~~~g~~~~----------------------------------~~~~~~l~~ll  187 (523)
                          .        ++....+     .++++|.++.                                  +++.+++.++|
T Consensus       114 ~~l~~~~~~~~~~~l~~~~~-----~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  188 (220)
T 3hnr_A          114 YAFHHLTDDEKNVAIAKYSQ-----LLNKGGKIVFADTIFADQDAYDKTVEAAKQRGFHQLANDLQTEYYTRIPVMQTIF  188 (220)
T ss_dssp             SCGGGSCHHHHHHHHHHHHH-----HSCTTCEEEEEEECBSSHHHHHHHHHHHHHTTCHHHHHHHHHSCCCBHHHHHHHH
T ss_pred             cchhcCChHHHHHHHHHHHH-----hcCCCCEEEEEeccccChHHHHHHHHHHHhCCCccchhhcchhhcCCHHHHHHHH
Confidence                0        1111111     3444554432                                  34779999999


Q ss_pred             HhCCCcEEEEEe
Q 009871          188 KENGFDVEELGL  199 (523)
Q Consensus       188 ~~~Gf~~~~~~~  199 (523)
                      +++||+++....
T Consensus       189 ~~aGf~v~~~~~  200 (220)
T 3hnr_A          189 ENNGFHVTFTRL  200 (220)
T ss_dssp             HHTTEEEEEEEC
T ss_pred             HHCCCEEEEeec
Confidence            999998766643

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=99.42  E-value=1.2e-12  Score=124.20  Aligned_cols=126  Identities=17%  Similarity=0.124  Sum_probs=91.5

Q ss_pred             hhhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC-CCcEEEEEeeccCCccCCCCCCCce
Q 009871           69 RYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT-ETRVSTFVCDLISDDLSRQISPSSI  147 (523)
Q Consensus        69 ~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~-~~~v~~~~~d~~~~~~~~~~~~~~f  147 (523)
                      +.+...++.+|||||||+|..+..+++.+  .+|+|+|+|+.|++.|+++.... ..++++.++|+..+    ++++++|
T Consensus        15 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~----~~~~~~f   88 (239)
T 1xxl_A           15 KTAECRAEHRVLDIGAGAGHTALAFSPYV--QECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESL----PFPDDSF   88 (239)
T ss_dssp             HHHTCCTTCEEEEESCTTSHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBC----CSCTTCE
T ss_pred             HHhCcCCCCEEEEEccCcCHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccC----CCCCCcE
Confidence            34555788999999999999999999885  47999999999999999876432 25799999999877    6778999


Q ss_pred             eEEEE-----------------ccccccceeeecceEEec----------------CCeEEEeeCHHHHHHHHHhCCCcE
Q 009871          148 DIVTM-----------------ERLTGKDQKISENFYVRG----------------DGTRAFYFSNDFLTSLFKENGFDV  194 (523)
Q Consensus       148 D~V~~-----------------~~~~~~~~~~~~~~~~~~----------------~g~~~~~~~~~~l~~ll~~~Gf~~  194 (523)
                      |+|++                 .+.+++++.+.-.....+                ++....+++.+++.++|+++||.+
T Consensus        89 D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~  168 (239)
T 1xxl_A           89 DIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYAPEDPVLDEFVNHLNRLRDPSHVRESSLSEWQAMFSANQLAY  168 (239)
T ss_dssp             EEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHTTEEE
T ss_pred             EEEEECCchhhccCHHHHHHHHHHHcCCCcEEEEEEcCCCCChhHHHHHHHHHHhccccccCCCCHHHHHHHHHHCCCcE
Confidence            99999                 223334433321100010                111123458899999999999998


Q ss_pred             EEEEeE
Q 009871          195 EELGLC  200 (523)
Q Consensus       195 ~~~~~~  200 (523)
                      +.+...
T Consensus       169 ~~~~~~  174 (239)
T 1xxl_A          169 QDIQKW  174 (239)
T ss_dssp             EEEEEE
T ss_pred             EEEEee
Confidence            766543

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=99.42  E-value=9.5e-13  Score=125.16  Aligned_cols=125  Identities=11%  Similarity=0.100  Sum_probs=99.4

Q ss_pred             CCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCC
Q 009871          334 VAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG  413 (523)
Q Consensus       334 ~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~  413 (523)
                      .++.+|||||||+|.++..++..+. +|+++|+|+.+++.++++...        ++.+...|..+.        .++++
T Consensus        41 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~--------~v~~~~~d~~~~--------~~~~~  103 (250)
T 2p7i_A           41 FRPGNLLELGSFKGDFTSRLQEHFN-DITCVEASEEAISHAQGRLKD--------GITYIHSRFEDA--------QLPRR  103 (250)
T ss_dssp             CCSSCEEEESCTTSHHHHHHTTTCS-CEEEEESCHHHHHHHHHHSCS--------CEEEEESCGGGC--------CCSSC
T ss_pred             cCCCcEEEECCCCCHHHHHHHHhCC-cEEEEeCCHHHHHHHHHhhhC--------CeEEEEccHHHc--------CcCCc
Confidence            3677999999999988888887765 799999999999999886432        455555444322        23568


Q ss_pred             ccEEEEccccCCCCChHHHHHHHH-HHhhccCCCCCCCCCcEEEEEEeecC-----------------------------
Q 009871          414 FEVILGTDVSYIPEAILPLFATAK-ELTASSNKSLREDQQPAFILCHIFRQ-----------------------------  463 (523)
Q Consensus       414 fD~Ii~~d~~y~~~~~~~l~~~l~-~ll~~~~~~~~~~~~g~~~l~~~~r~-----------------------------  463 (523)
                      ||+|++..++++..+...+++.+. ++|         +|||.+++....+.                             
T Consensus       104 fD~v~~~~~l~~~~~~~~~l~~~~~~~L---------kpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (250)
T 2p7i_A          104 YDNIVLTHVLEHIDDPVALLKRINDDWL---------AEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHR  174 (250)
T ss_dssp             EEEEEEESCGGGCSSHHHHHHHHHHTTE---------EEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTTCC
T ss_pred             ccEEEEhhHHHhhcCHHHHHHHHHHHhc---------CCCCEEEEEcCChHHHHHHHHHHcCccccchhccccccccccc
Confidence            999999999999989999999999 999         67999998774321                             


Q ss_pred             --CChhHHHHHHHHcCCEEEEEc
Q 009871          464 --VDEPSMLSAATQCGFRLVDKW  484 (523)
Q Consensus       464 --~~~~~~~~~~~~~gf~~~~~~  484 (523)
                        .+...+.+.++++||++.++.
T Consensus       175 ~~~~~~~~~~~l~~~Gf~~~~~~  197 (250)
T 2p7i_A          175 CTYALDTLERDASRAGLQVTYRS  197 (250)
T ss_dssp             CCCCHHHHHHHHHHTTCEEEEEE
T ss_pred             ccCCHHHHHHHHHHCCCeEEEEe
Confidence              244577888999999998874

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=99.42  E-value=1.6e-12  Score=125.74  Aligned_cols=126  Identities=21%  Similarity=0.140  Sum_probs=92.8

Q ss_pred             hhhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC--CCcEEEEEeeccCCccCCCCCCCc
Q 009871           69 RYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISDDLSRQISPSS  146 (523)
Q Consensus        69 ~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~~~~~~~~~~  146 (523)
                      +.++..++.+|||||||+|..+..+++.. +++|+|+|+|+.|++.|+++....  ..++++.++|+.++    ++++++
T Consensus        55 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~----~~~~~~  129 (273)
T 3bus_A           55 ALLDVRSGDRVLDVGCGIGKPAVRLATAR-DVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDL----PFEDAS  129 (273)
T ss_dssp             HHSCCCTTCEEEEESCTTSHHHHHHHHHS-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSC----CSCTTC
T ss_pred             HhcCCCCCCEEEEeCCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccC----CCCCCC
Confidence            34455678899999999999999999876 678999999999999999876432  24799999999877    677889


Q ss_pred             eeEEEE-----------------ccccccceeeecceEEecCCe----------------EEEeeCHHHHHHHHHhCCCc
Q 009871          147 IDIVTM-----------------ERLTGKDQKISENFYVRGDGT----------------RAFYFSNDFLTSLFKENGFD  193 (523)
Q Consensus       147 fD~V~~-----------------~~~~~~~~~~~~~~~~~~~g~----------------~~~~~~~~~l~~ll~~~Gf~  193 (523)
                      ||+|++                 .+++++++.+.-......+..                ...+++.+++.++++++||+
T Consensus       130 fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~  209 (273)
T 3bus_A          130 FDAVWALESLHHMPDRGRALREMARVLRPGGTVAIADFVLLAPVEGAKKEAVDAFRAGGGVLSLGGIDEYESDVRQAELV  209 (273)
T ss_dssp             EEEEEEESCTTTSSCHHHHHHHHHTTEEEEEEEEEEEEEESSCCCHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHTTCE
T ss_pred             ccEEEEechhhhCCCHHHHHHHHHHHcCCCeEEEEEEeeccCCCChhHHHHHHHHHhhcCccCCCCHHHHHHHHHHcCCe
Confidence            999998                 333444444332111111100                11235789999999999999


Q ss_pred             EEEEEe
Q 009871          194 VEELGL  199 (523)
Q Consensus       194 ~~~~~~  199 (523)
                      ++.+..
T Consensus       210 ~~~~~~  215 (273)
T 3bus_A          210 VTSTVD  215 (273)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            876654

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=99.42  E-value=1.3e-12  Score=123.99  Aligned_cols=125  Identities=14%  Similarity=0.106  Sum_probs=87.2

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCC-CcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQISPSSIDIVTM  152 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~V~~  152 (523)
                      .++.+|||||||+|..+..++...++.+|+|+|+|+.|++.|+++....+ .+++++++|+.++.++ +..+++||+|++
T Consensus        69 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~~~~~fD~V~~  147 (240)
T 1xdz_A           69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQR-KDVRESYDIVTA  147 (240)
T ss_dssp             GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTC-TTTTTCEEEEEE
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhccc-ccccCCccEEEE
Confidence            36789999999999999999987778899999999999999999764332 4699999999865211 011578999999


Q ss_pred             ccccccceeeec-ceEEecCCeEEEee---C---HHHHHHHHHhCCCcEEEEEe
Q 009871          153 ERLTGKDQKISE-NFYVRGDGTRAFYF---S---NDFLTSLFKENGFDVEELGL  199 (523)
Q Consensus       153 ~~~~~~~~~~~~-~~~~~~~g~~~~~~---~---~~~l~~ll~~~Gf~~~~~~~  199 (523)
                      ..+......+.. ...++++|.++++.   .   .+++.+.+++.||.+..+..
T Consensus       148 ~~~~~~~~~l~~~~~~LkpgG~l~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~  201 (240)
T 1xdz_A          148 RAVARLSVLSELCLPLVKKNGLFVALKAASAEEELNAGKKAITTLGGELENIHS  201 (240)
T ss_dssp             ECCSCHHHHHHHHGGGEEEEEEEEEEECC-CHHHHHHHHHHHHHTTEEEEEEEE
T ss_pred             eccCCHHHHHHHHHHhcCCCCEEEEEeCCCchHHHHHHHHHHHHcCCeEeEEEE
Confidence            222110000000 11567777776543   2   23467778899998876643

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=99.42  E-value=1.6e-12  Score=127.28  Aligned_cols=74  Identities=18%  Similarity=0.223  Sum_probs=62.4

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCC--CcEEEEEeeccCCccCCCC-CCCceeEE
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQI-SPSSIDIV  150 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~-~~~~fD~V  150 (523)
                      .++.+|||||||+|..+..+++.. ..+|+|+|+|+.|++.|+++.....  .++.++++|+.+.    ++ ++++||+|
T Consensus        63 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~~~~~~~fD~v  137 (298)
T 1ri5_A           63 KRGDSVLDLGCGKGGDLLKYERAG-IGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGR----HMDLGKEFDVI  137 (298)
T ss_dssp             CTTCEEEEETCTTTTTHHHHHHHT-CSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTS----CCCCSSCEEEE
T ss_pred             CCCCeEEEECCCCCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCcccc----ccCCCCCcCEE
Confidence            567899999999999999988773 4589999999999999999764332  4689999999876    45 57899999


Q ss_pred             EE
Q 009871          151 TM  152 (523)
Q Consensus       151 ~~  152 (523)
                      ++
T Consensus       138 ~~  139 (298)
T 1ri5_A          138 SS  139 (298)
T ss_dssp             EE
T ss_pred             EE
Confidence            98

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=99.41  E-value=2.5e-12  Score=121.35  Aligned_cols=131  Identities=16%  Similarity=0.218  Sum_probs=101.2

Q ss_pred             CCCCCeEEEECCCccHHHHHHHhcC-CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcC
Q 009871          333 IVAGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENN  411 (523)
Q Consensus       333 ~~~~~~VLElG~G~G~l~~~~a~~~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~  411 (523)
                      ..++.+|||+|||+|.++..++... ..+|+++|+|+.+++.+++++..++      ++.+...|..+..       . .
T Consensus        42 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~------~~~~~~~d~~~~~-------~-~  107 (234)
T 3dtn_A           42 DTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNL------KVKYIEADYSKYD-------F-E  107 (234)
T ss_dssp             SCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCT------TEEEEESCTTTCC-------C-C
T ss_pred             CCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCC------CEEEEeCchhccC-------C-C
Confidence            4577899999999999888888875 5689999999999999998865432      5677666655431       1 2


Q ss_pred             CCccEEEEccccCCCCChH--HHHHHHHHHhhccCCCCCCCCCcEEEEEEeecC--------------------------
Q 009871          412 EGFEVILGTDVSYIPEAIL--PLFATAKELTASSNKSLREDQQPAFILCHIFRQ--------------------------  463 (523)
Q Consensus       412 ~~fD~Ii~~d~~y~~~~~~--~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~--------------------------  463 (523)
                      ++||+|+++.++++.....  .+++.+.++|         +|||.++++.....                          
T Consensus       108 ~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L---------kpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (234)
T 3dtn_A          108 EKYDMVVSALSIHHLEDEDKKELYKRSYSIL---------KESGIFINADLVHGETAFIENLNKTIWRQYVENSGLTEEE  178 (234)
T ss_dssp             SCEEEEEEESCGGGSCHHHHHHHHHHHHHHE---------EEEEEEEEEEECBCSSHHHHHHHHHHHHHHHHTSSCCHHH
T ss_pred             CCceEEEEeCccccCCHHHHHHHHHHHHHhc---------CCCcEEEEEEecCCCChhhhhHHHHHHHHHHHhcCCCHHH
Confidence            6899999999998876444  5999999999         67999998764321                          


Q ss_pred             -------------CChhHHHHHHHHcCCEEEEEcCC
Q 009871          464 -------------VDEPSMLSAATQCGFRLVDKWPS  486 (523)
Q Consensus       464 -------------~~~~~~~~~~~~~gf~~~~~~~~  486 (523)
                                   .+.+++.+.++++||+..+++..
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~~~~  214 (234)
T 3dtn_A          179 IAAGYERSKLDKDIEMNQQLNWLKEAGFRDVSCIYK  214 (234)
T ss_dssp             HHTTC----CCCCCBHHHHHHHHHHTTCEEEEEEEE
T ss_pred             HHHHHHhcccccccCHHHHHHHHHHcCCCceeeeee
Confidence                         12245566889999999888653

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=99.41  E-value=7.7e-13  Score=122.87  Aligned_cols=124  Identities=14%  Similarity=0.066  Sum_probs=97.0

Q ss_pred             CCCeEEEECCCccHHHHHHHhcC-CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCC-
Q 009871          335 AGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNE-  412 (523)
Q Consensus       335 ~~~~VLElG~G~G~l~~~~a~~~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~-  412 (523)
                      ++.+|||+|||+|.++..++..+ ..+|+++|+++.+++.|++|++.|++.   .++.+...|+.+.        +++. 
T Consensus        15 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~---~~i~~~~~d~l~~--------l~~~~   83 (225)
T 3kr9_A           15 QGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLK---EKIQVRLANGLAA--------FEETD   83 (225)
T ss_dssp             TTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCT---TTEEEEECSGGGG--------CCGGG
T ss_pred             CCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC---ceEEEEECchhhh--------cccCc
Confidence            67899999999999999999887 458999999999999999999999986   5688877665332        2222 


Q ss_pred             CccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhHHHHHHHHcCCEEEEE
Q 009871          413 GFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLVDK  483 (523)
Q Consensus       413 ~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~~~~~~~~gf~~~~~  483 (523)
                      +||+|+.+.+.  ...+..++......|         ++++.++++..   ...+.+.+.+.++||.+.+.
T Consensus        84 ~~D~IviaG~G--g~~i~~Il~~~~~~L---------~~~~~lVlq~~---~~~~~vr~~L~~~Gf~i~~e  140 (225)
T 3kr9_A           84 QVSVITIAGMG--GRLIARILEEGLGKL---------ANVERLILQPN---NREDDLRIWLQDHGFQIVAE  140 (225)
T ss_dssp             CCCEEEEEEEC--HHHHHHHHHHTGGGC---------TTCCEEEEEES---SCHHHHHHHHHHTTEEEEEE
T ss_pred             CCCEEEEcCCC--hHHHHHHHHHHHHHh---------CCCCEEEEECC---CCHHHHHHHHHHCCCEEEEE
Confidence            69988865432  234667777777777         56889888765   36778889999999998765

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=99.41  E-value=1.3e-12  Score=122.71  Aligned_cols=112  Identities=14%  Similarity=0.182  Sum_probs=89.3

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeecc-CCccCCCCC-CCceeEEE
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLI-SDDLSRQIS-PSSIDIVT  151 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~-~~~~~~~~~-~~~fD~V~  151 (523)
                      .++.+|||||||+|.++..+++.  +.+|+|+|+|+.|++.|+++.    .+++++++|+. .+    +++ +++||+|+
T Consensus        47 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~----~~~~~~~~d~~~~~----~~~~~~~fD~v~  116 (226)
T 3m33_A           47 TPQTRVLEAGCGHGPDAARFGPQ--AARWAAYDFSPELLKLARANA----PHADVYEWNGKGEL----PAGLGAPFGLIV  116 (226)
T ss_dssp             CTTCEEEEESCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHC----TTSEEEECCSCSSC----CTTCCCCEEEEE
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHhC----CCceEEEcchhhcc----CCcCCCCEEEEE
Confidence            46789999999999999999998  678999999999999999872    57899999994 44    566 78999999


Q ss_pred             E----ccccccceeeecceEEecCCeEEE---eeCHHHHHHHHHhCCCcEEEEEeE
Q 009871          152 M----ERLTGKDQKISENFYVRGDGTRAF---YFSNDFLTSLFKENGFDVEELGLC  200 (523)
Q Consensus       152 ~----~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~l~~ll~~~Gf~~~~~~~~  200 (523)
                      +    ..++....+     .++++|.++.   +.+.+++.+.+.++||....+...
T Consensus       117 ~~~~~~~~l~~~~~-----~LkpgG~l~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~  167 (226)
T 3m33_A          117 SRRGPTSVILRLPE-----LAAPDAHFLYVGPRLNVPEVPERLAAVGWDIVAEDHV  167 (226)
T ss_dssp             EESCCSGGGGGHHH-----HEEEEEEEEEEESSSCCTHHHHHHHHTTCEEEEEEEE
T ss_pred             eCCCHHHHHHHHHH-----HcCCCcEEEEeCCcCCHHHHHHHHHHCCCeEEEEEee
Confidence            9    233333333     5677777653   237789999999999998776543

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=99.41  E-value=6.4e-13  Score=129.14  Aligned_cols=121  Identities=16%  Similarity=0.227  Sum_probs=87.3

Q ss_pred             hhhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCcee
Q 009871           69 RYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSID  148 (523)
Q Consensus        69 ~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD  148 (523)
                      +.+...++.+|||||||+|..+..+++  ++.+|+|+|+|+.|++.|+++.    .++.+.++|+..+    ++ +++||
T Consensus        51 ~~l~~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~----~~~~~~~~d~~~~----~~-~~~fD  119 (279)
T 3ccf_A           51 QLLNPQPGEFILDLGCGTGQLTEKIAQ--SGAEVLGTDNAATMIEKARQNY----PHLHFDVADARNF----RV-DKPLD  119 (279)
T ss_dssp             HHHCCCTTCEEEEETCTTSHHHHHHHH--TTCEEEEEESCHHHHHHHHHHC----TTSCEEECCTTTC----CC-SSCEE
T ss_pred             HHhCCCCCCEEEEecCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHhhC----CCCEEEECChhhC----Cc-CCCcC
Confidence            334446788999999999999999998  4788999999999999999875    5688999999876    44 57899


Q ss_pred             EEEE-----------------ccccccceeeecceEEecC----------------------CeEEEeeCHHHHHHHHHh
Q 009871          149 IVTM-----------------ERLTGKDQKISENFYVRGD----------------------GTRAFYFSNDFLTSLFKE  189 (523)
Q Consensus       149 ~V~~-----------------~~~~~~~~~~~~~~~~~~~----------------------g~~~~~~~~~~l~~ll~~  189 (523)
                      +|++                 .+.+++++.+.-.......                      ....++++.+++.++|++
T Consensus       120 ~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  199 (279)
T 3ccf_A          120 AVFSNAMLHWVKEPEAAIASIHQALKSGGRFVAEFGGKGNIKYILEALYNALETLGIHNPQALNPWYFPSIGEYVNILEK  199 (279)
T ss_dssp             EEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECTTTTHHHHHHHHHHHHHHTCCCGGGGCCCCCCCHHHHHHHHHH
T ss_pred             EEEEcchhhhCcCHHHHHHHHHHhcCCCcEEEEEecCCcchHHHHHHHHHHHHhcCCccccCcCceeCCCHHHHHHHHHH
Confidence            9999                 2333444433211100000                      001134578899999999


Q ss_pred             CCCcEEEEEeE
Q 009871          190 NGFDVEELGLC  200 (523)
Q Consensus       190 ~Gf~~~~~~~~  200 (523)
                      +||+++.+...
T Consensus       200 aGf~~~~~~~~  210 (279)
T 3ccf_A          200 QGFDVTYAALF  210 (279)
T ss_dssp             HTEEEEEEEEE
T ss_pred             cCCEEEEEEEe
Confidence            99998776544

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=99.41  E-value=2.2e-12  Score=116.10  Aligned_cols=129  Identities=11%  Similarity=0.024  Sum_probs=96.5

Q ss_pred             CCCCCCeEEEECCCccHHHHHHHhcC-CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhc
Q 009871          332 TIVAGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEEN  410 (523)
Q Consensus       332 ~~~~~~~VLElG~G~G~l~~~~a~~~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~  410 (523)
                      ...++.+|||+|||+|.++..++... ..+|+++|+++.+++.+++|+..++..   .++ +...+..+  .+    +..
T Consensus        22 ~~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~---~~~-~~~~d~~~--~~----~~~   91 (178)
T 3hm2_A           22 APKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVS---DRI-AVQQGAPR--AF----DDV   91 (178)
T ss_dssp             CCCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCT---TSE-EEECCTTG--GG----GGC
T ss_pred             cccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCC---CCE-EEecchHh--hh----hcc
Confidence            34577899999999998888888874 568999999999999999999987764   245 43333221  11    111


Q ss_pred             CCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhHHHHHHHHcCCEEEEEc
Q 009871          411 NEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLVDKW  484 (523)
Q Consensus       411 ~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~~~~~~~~gf~~~~~~  484 (523)
                      .++||+|+++.++++    ..+++.+.++|         +|||.+++..... .....+.+.+++.|+++.++.
T Consensus        92 ~~~~D~i~~~~~~~~----~~~l~~~~~~L---------~~gG~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  151 (178)
T 3hm2_A           92 PDNPDVIFIGGGLTA----PGVFAAAWKRL---------PVGGRLVANAVTV-ESEQMLWALRKQFGGTISSFA  151 (178)
T ss_dssp             CSCCSEEEECC-TTC----TTHHHHHHHTC---------CTTCEEEEEECSH-HHHHHHHHHHHHHCCEEEEEE
T ss_pred             CCCCCEEEECCcccH----HHHHHHHHHhc---------CCCCEEEEEeecc-ccHHHHHHHHHHcCCeeEEEE
Confidence            268999999987776    77899999999         7799999876542 234467788888999887763

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=99.41  E-value=4.8e-13  Score=128.70  Aligned_cols=141  Identities=11%  Similarity=0.030  Sum_probs=103.7

Q ss_pred             CCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCC--------------C-----------C
Q 009871          333 IVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPP--------------F-----------L  387 (523)
Q Consensus       333 ~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~--------------~-----------~  387 (523)
                      ..++.+|||||||+|.++..++..+..+|+++|+|+.+++.+++++..+....              .           .
T Consensus        54 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  133 (265)
T 2i62_A           54 AVKGELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLR  133 (265)
T ss_dssp             SCCEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHH
T ss_pred             ccCCCEEEEECCCccHHHHHHhhcccCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhh
Confidence            35788999999999988888887776689999999999999999876542100              0           0


Q ss_pred             Cce-EEEeeecCCCCcchhhhhhcCCCccEEEEccccC----CCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee-
Q 009871          388 AKL-ITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSY----IPEAILPLFATAKELTASSNKSLREDQQPAFILCHIF-  461 (523)
Q Consensus       388 ~~v-~~~~ldw~~~~~~~~~~~~~~~~fD~Ii~~d~~y----~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~-  461 (523)
                      .++ .+...|..+.....   +...++||+|+++.+++    +......+++.+.++|         +|||.+++.... 
T Consensus       134 ~~v~~~~~~d~~~~~~~~---~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~L---------kpgG~li~~~~~~  201 (265)
T 2i62_A          134 RAIKQVLKCDVTQSQPLG---GVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLL---------KPGGFLVMVDALK  201 (265)
T ss_dssp             HHEEEEEECCTTSSSTTT---TCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTE---------EEEEEEEEEEESS
T ss_pred             hhheeEEEeeeccCCCCC---ccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhC---------CCCcEEEEEecCC
Confidence            125 66666655432110   11226899999999988    5557888999999999         679999887532 


Q ss_pred             -------------cCCChhHHHHHHHHcCCEEEEEcC
Q 009871          462 -------------RQVDEPSMLSAATQCGFRLVDKWP  485 (523)
Q Consensus       462 -------------r~~~~~~~~~~~~~~gf~~~~~~~  485 (523)
                                   +..+.+.+.+.++++||++.++..
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~  238 (265)
T 2i62_A          202 SSYYMIGEQKFSSLPLGWETVRDAVEEAGYTIEQFEV  238 (265)
T ss_dssp             CCEEEETTEEEECCCCCHHHHHHHHHHTTCEEEEEEE
T ss_pred             CceEEcCCccccccccCHHHHHHHHHHCCCEEEEEEE
Confidence                         234556788999999999988754

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=99.40  E-value=1.1e-12  Score=122.06  Aligned_cols=125  Identities=11%  Similarity=0.085  Sum_probs=97.4

Q ss_pred             CCCeEEEECCCccHHHHHHHhcC-CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcC-C
Q 009871          335 AGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENN-E  412 (523)
Q Consensus       335 ~~~~VLElG~G~G~l~~~~a~~~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~-~  412 (523)
                      ++.+|||+|||+|.++..++..+ +.+|+++|+++.+++.|++|++.|++.   .++.+...|+.+.        +.+ .
T Consensus        21 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~---~~I~~~~gD~l~~--------~~~~~   89 (230)
T 3lec_A           21 KGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLT---SKIDVRLANGLSA--------FEEAD   89 (230)
T ss_dssp             TTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCT---TTEEEEECSGGGG--------CCGGG
T ss_pred             CCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC---CcEEEEECchhhc--------ccccc
Confidence            67899999999999999999887 458999999999999999999999986   5788877665432        112 3


Q ss_pred             CccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhHHHHHHHHcCCEEEEEc
Q 009871          413 GFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLVDKW  484 (523)
Q Consensus       413 ~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~~~~~~~~gf~~~~~~  484 (523)
                      +||+|+.+-+.-  +.+..++......|         +++|.++++..   ...+.+.+.+.++||.+.+..
T Consensus        90 ~~D~IviaGmGg--~lI~~IL~~~~~~l---------~~~~~lIlqp~---~~~~~lr~~L~~~Gf~i~~E~  147 (230)
T 3lec_A           90 NIDTITICGMGG--RLIADILNNDIDKL---------QHVKTLVLQPN---NREDDLRKWLAANDFEIVAED  147 (230)
T ss_dssp             CCCEEEEEEECH--HHHHHHHHHTGGGG---------TTCCEEEEEES---SCHHHHHHHHHHTTEEEEEEE
T ss_pred             ccCEEEEeCCch--HHHHHHHHHHHHHh---------CcCCEEEEECC---CChHHHHHHHHHCCCEEEEEE
Confidence            799987553322  44666777776677         56889998874   357788999999999987753

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=99.40  E-value=7.5e-13  Score=130.87  Aligned_cols=123  Identities=11%  Similarity=0.170  Sum_probs=89.7

Q ss_pred             CCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCC--CcEEEEEeeccCCccCCCCCCCceeEE
Q 009871           73 GAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQISPSSIDIV  150 (523)
Q Consensus        73 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~V  150 (523)
                      ..++.+|||||||+|.++..+++++ +++|+|+|+|+.|++.|+++....+  .+++++++|+.++    ++++++||+|
T Consensus       115 ~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~~~~~~fD~V  189 (312)
T 3vc1_A          115 AGPDDTLVDAGCGRGGSMVMAHRRF-GSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDT----PFDKGAVTAS  189 (312)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSC----CCCTTCEEEE
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcC----CCCCCCEeEE
Confidence            4568899999999999999999885 5789999999999999999765432  4799999999877    6778999999


Q ss_pred             EEcc---ccccceeeec-ceEEecCCeEEE--------------------------eeCHHHHHHHHHhCCCcEEEEEeE
Q 009871          151 TMER---LTGKDQKISE-NFYVRGDGTRAF--------------------------YFSNDFLTSLFKENGFDVEELGLC  200 (523)
Q Consensus       151 ~~~~---~~~~~~~~~~-~~~~~~~g~~~~--------------------------~~~~~~l~~ll~~~Gf~~~~~~~~  200 (523)
                      ++..   .......+.. ...++++|.+++                          +++.+++.++++++||+++.+...
T Consensus       190 ~~~~~l~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~aGf~~~~~~~~  269 (312)
T 3vc1_A          190 WNNESTMYVDLHDLFSEHSRFLKVGGRYVTITGCWNPRYGQPSKWVSQINAHFECNIHSRREYLRAMADNRLVPHTIVDL  269 (312)
T ss_dssp             EEESCGGGSCHHHHHHHHHHHEEEEEEEEEEEEEECTTTCSCCHHHHHHHHHHTCCCCBHHHHHHHHHTTTEEEEEEEEC
T ss_pred             EECCchhhCCHHHHHHHHHHHcCCCcEEEEEEccccccccchhHHHHHHHhhhcCCCCCHHHHHHHHHHCCCEEEEEEeC
Confidence            9910   0000000000 012334443321                          247899999999999998877644

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=99.40  E-value=4.1e-12  Score=118.66  Aligned_cols=125  Identities=13%  Similarity=0.108  Sum_probs=97.0

Q ss_pred             CCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCc
Q 009871          335 AGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGF  414 (523)
Q Consensus       335 ~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~f  414 (523)
                      ++.+|||+|||+|.++..++..+ .+|+++|+++.+++.+++++.        .++.+...|..+.       +.. ++|
T Consensus        45 ~~~~vLDiGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~--------~~~~~~~~d~~~~-------~~~-~~f  107 (220)
T 3hnr_A           45 SFGNVLEFGVGTGNLTNKLLLAG-RTVYGIEPSREMRMIAKEKLP--------KEFSITEGDFLSF-------EVP-TSI  107 (220)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHTT-CEEEEECSCHHHHHHHHHHSC--------TTCCEESCCSSSC-------CCC-SCC
T ss_pred             CCCeEEEeCCCCCHHHHHHHhCC-CeEEEEeCCHHHHHHHHHhCC--------CceEEEeCChhhc-------CCC-CCe
Confidence            67899999999998888888874 589999999999999988754        2344554444432       122 689


Q ss_pred             cEEEEccccCCCCChHH--HHHHHHHHhhccCCCCCCCCCcEEEEEEeecC-----------------------------
Q 009871          415 EVILGTDVSYIPEAILP--LFATAKELTASSNKSLREDQQPAFILCHIFRQ-----------------------------  463 (523)
Q Consensus       415 D~Ii~~d~~y~~~~~~~--l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~-----------------------------  463 (523)
                      |+|+++.++++......  +++.+.++|         +|||.+++......                             
T Consensus       108 D~v~~~~~l~~~~~~~~~~~l~~~~~~L---------kpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (220)
T 3hnr_A          108 DTIVSTYAFHHLTDDEKNVAIAKYSQLL---------NKGGKIVFADTIFADQDAYDKTVEAAKQRGFHQLANDLQTEYY  178 (220)
T ss_dssp             SEEEEESCGGGSCHHHHHHHHHHHHHHS---------CTTCEEEEEEECBSSHHHHHHHHHHHHHTTCHHHHHHHHHSCC
T ss_pred             EEEEECcchhcCChHHHHHHHHHHHHhc---------CCCCEEEEEeccccChHHHHHHHHHHHhCCCccchhhcchhhc
Confidence            99999999998877766  999999999         77999999864321                             


Q ss_pred             CChhHHHHHHHHcCCEEEEEcC
Q 009871          464 VDEPSMLSAATQCGFRLVDKWP  485 (523)
Q Consensus       464 ~~~~~~~~~~~~~gf~~~~~~~  485 (523)
                      .+.+.+.+.++++||++..+..
T Consensus       179 ~~~~~~~~~l~~aGf~v~~~~~  200 (220)
T 3hnr_A          179 TRIPVMQTIFENNGFHVTFTRL  200 (220)
T ss_dssp             CBHHHHHHHHHHTTEEEEEEEC
T ss_pred             CCHHHHHHHHHHCCCEEEEeec
Confidence            1335677888999999887754

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=99.40  E-value=3.4e-13  Score=129.80  Aligned_cols=79  Identities=19%  Similarity=0.194  Sum_probs=66.6

Q ss_pred             hHHHHhhhhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCC
Q 009871           63 LDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQI  142 (523)
Q Consensus        63 l~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~  142 (523)
                      +...+.+.++..++.+|||||||+|..+..+++  ++.+|+|+|+|+.|++.|+++.     +++++++|+.++    ++
T Consensus        22 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~-----~~~~~~~d~~~~----~~   90 (261)
T 3ege_A           22 IVNAIINLLNLPKGSVIADIGAGTGGYSVALAN--QGLFVYAVEPSIVMRQQAVVHP-----QVEWFTGYAENL----AL   90 (261)
T ss_dssp             HHHHHHHHHCCCTTCEEEEETCTTSHHHHHHHT--TTCEEEEECSCHHHHHSSCCCT-----TEEEECCCTTSC----CS
T ss_pred             HHHHHHHHhCCCCCCEEEEEcCcccHHHHHHHh--CCCEEEEEeCCHHHHHHHHhcc-----CCEEEECchhhC----CC
Confidence            334444555556789999999999999999997  4788999999999999887764     799999999877    67


Q ss_pred             CCCceeEEEE
Q 009871          143 SPSSIDIVTM  152 (523)
Q Consensus       143 ~~~~fD~V~~  152 (523)
                      ++++||+|++
T Consensus        91 ~~~~fD~v~~  100 (261)
T 3ege_A           91 PDKSVDGVIS  100 (261)
T ss_dssp             CTTCBSEEEE
T ss_pred             CCCCEeEEEE
Confidence            7899999999

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=99.40  E-value=2e-12  Score=115.63  Aligned_cols=122  Identities=16%  Similarity=0.216  Sum_probs=97.2

Q ss_pred             CCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCC
Q 009871          334 VAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG  413 (523)
Q Consensus       334 ~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~  413 (523)
                      .++.+|||+|||+|.++..++..+. +|+++|+++.+++.++++  .       .++.+...|          .++..++
T Consensus        16 ~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~--~-------~~v~~~~~d----------~~~~~~~   75 (170)
T 3i9f_A           16 GKKGVIVDYGCGNGFYCKYLLEFAT-KLYCIDINVIALKEVKEK--F-------DSVITLSDP----------KEIPDNS   75 (170)
T ss_dssp             SCCEEEEEETCTTCTTHHHHHTTEE-EEEEECSCHHHHHHHHHH--C-------TTSEEESSG----------GGSCTTC
T ss_pred             CCCCeEEEECCCCCHHHHHHHhhcC-eEEEEeCCHHHHHHHHHh--C-------CCcEEEeCC----------CCCCCCc
Confidence            4677999999999988888888875 999999999999999887  1       345555444          1334678


Q ss_pred             ccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecC-----------CChhHHHHHHHHcCCEEEE
Q 009871          414 FEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ-----------VDEPSMLSAATQCGFRLVD  482 (523)
Q Consensus       414 fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~-----------~~~~~~~~~~~~~gf~~~~  482 (523)
                      ||+|+++.++++......+++.+.++|         +|+|.+++....+.           .+..++.+.++  ||++.+
T Consensus        76 ~D~v~~~~~l~~~~~~~~~l~~~~~~L---------~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--Gf~~~~  144 (170)
T 3i9f_A           76 VDFILFANSFHDMDDKQHVISEVKRIL---------KDDGRVIIIDWRKENTGIGPPLSIRMDEKDYMGWFS--NFVVEK  144 (170)
T ss_dssp             EEEEEEESCSTTCSCHHHHHHHHHHHE---------EEEEEEEEEEECSSCCSSSSCGGGCCCHHHHHHHTT--TEEEEE
T ss_pred             eEEEEEccchhcccCHHHHHHHHHHhc---------CCCCEEEEEEcCccccccCchHhhhcCHHHHHHHHh--CcEEEE
Confidence            999999999999999999999999999         67999998865432           23445666666  999988


Q ss_pred             EcCC
Q 009871          483 KWPS  486 (523)
Q Consensus       483 ~~~~  486 (523)
                      ....
T Consensus       145 ~~~~  148 (170)
T 3i9f_A          145 RFNP  148 (170)
T ss_dssp             EECS
T ss_pred             ccCC
Confidence            8763

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=99.40  E-value=3.9e-12  Score=123.16  Aligned_cols=138  Identities=14%  Similarity=0.132  Sum_probs=105.9

Q ss_pred             CCCCCCeEEEECCCccHHHHHHHhc-CC-CEEEEEcCChH------HHHHHHHHHHhcCCCCCCCceEEEeee-cCCCCc
Q 009871          332 TIVAGKKVLELGCGCGGICSMVAAG-SA-DLVVATDGDSI------ALDLLAQNVTANLKPPFLAKLITKRLE-WGNRDH  402 (523)
Q Consensus       332 ~~~~~~~VLElG~G~G~l~~~~a~~-~~-~~V~~~D~~~~------~l~~~~~n~~~n~~~~~~~~v~~~~ld-w~~~~~  402 (523)
                      ...++.+|||||||+|.++..++.. ++ .+|+++|+|+.      +++.+++++..++..   .++.+...| +... .
T Consensus        40 ~~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~---~~v~~~~~d~~~~~-~  115 (275)
T 3bkx_A           40 QVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLG---DRLTVHFNTNLSDD-L  115 (275)
T ss_dssp             TCCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTG---GGEEEECSCCTTTC-C
T ss_pred             CCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCC---CceEEEECChhhhc-c
Confidence            4457889999999999988888887 44 69999999997      999999999887653   467776665 3221 1


Q ss_pred             chhhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec--------------------
Q 009871          403 IEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFR--------------------  462 (523)
Q Consensus       403 ~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r--------------------  462 (523)
                          .+++.++||+|++..++++......+++.+..++         +|||.+++.....                    
T Consensus       116 ----~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~l~---------~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (275)
T 3bkx_A          116 ----GPIADQHFDRVVLAHSLWYFASANALALLFKNMA---------AVCDHVDVAEWSMQPTALDQIGHLQAAMIQGLL  182 (275)
T ss_dssp             ----GGGTTCCCSEEEEESCGGGSSCHHHHHHHHHHHT---------TTCSEEEEEEECSSCSSGGGHHHHHHHHHHHHH
T ss_pred             ----CCCCCCCEEEEEEccchhhCCCHHHHHHHHHHHh---------CCCCEEEEEEecCCCCchhhhhHHHHHHHHHHH
Confidence                1344679999999999999888888888888888         5699998865321                    


Q ss_pred             -------------CCChhHHHHHHHHcCCEEEEEcCC
Q 009871          463 -------------QVDEPSMLSAATQCGFRLVDKWPS  486 (523)
Q Consensus       463 -------------~~~~~~~~~~~~~~gf~~~~~~~~  486 (523)
                                   ..+...+.+.++++||++.++...
T Consensus       183 ~~~~~~~~~~~~~~~s~~~l~~~l~~aGf~~~~~~~~  219 (275)
T 3bkx_A          183 YAIAPSDVANIRTLITPDTLAQIAHDNTWTYTAGTIV  219 (275)
T ss_dssp             HHHSCCTTCSCCCCCCHHHHHHHHHHHTCEEEECCCB
T ss_pred             hhccccccccccccCCHHHHHHHHHHCCCeeEEEEEe
Confidence                         123346777888999999887654

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=99.40  E-value=2.6e-12  Score=123.35  Aligned_cols=120  Identities=15%  Similarity=0.158  Sum_probs=87.9

Q ss_pred             CCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871           73 GAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM  152 (523)
Q Consensus        73 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~  152 (523)
                      ..++.+|||||||+|..+..+++.  +.+|+|+|+|+.|++.|+++......++++.++|+.++    ++++++||+|++
T Consensus        37 ~~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~----~~~~~~fD~v~~  110 (263)
T 2yqz_A           37 KGEEPVFLELGVGTGRIALPLIAR--GYRYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAI----PLPDESVHGVIV  110 (263)
T ss_dssp             SSSCCEEEEETCTTSTTHHHHHTT--TCEEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTSC----CSCTTCEEEEEE
T ss_pred             CCCCCEEEEeCCcCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHhhccCCceEEEEcccccC----CCCCCCeeEEEE
Confidence            356789999999999999999987  57899999999999999998633457899999999876    677889999999


Q ss_pred             -----------------ccccccceeeecceEEecC-Ce---------------------EEEeeCHHHHHHHHHhCCCc
Q 009871          153 -----------------ERLTGKDQKISENFYVRGD-GT---------------------RAFYFSNDFLTSLFKENGFD  193 (523)
Q Consensus       153 -----------------~~~~~~~~~~~~~~~~~~~-g~---------------------~~~~~~~~~l~~ll~~~Gf~  193 (523)
                                       .+.+++++.+.-. +..++ ..                     ...+++.+++.++|+++||.
T Consensus       111 ~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~  189 (263)
T 2yqz_A          111 VHLWHLVPDWPKVLAEAIRVLKPGGALLEG-WDQAEASPEWTLQERWRAFAAEEGFPVERGLHAKRLKEVEEALRRLGLK  189 (263)
T ss_dssp             ESCGGGCTTHHHHHHHHHHHEEEEEEEEEE-EEEECCCHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHHHHHHTTCC
T ss_pred             CCchhhcCCHHHHHHHHHHHCCCCcEEEEE-ecCCCccHHHHHHHHHHHHHHHhCCCcccccccCCHHHHHHHHHHcCCC
Confidence                             2333444443211 11110 00                     01234677889999999999


Q ss_pred             EEEEEe
Q 009871          194 VEELGL  199 (523)
Q Consensus       194 ~~~~~~  199 (523)
                      ++.+..
T Consensus       190 ~~~~~~  195 (263)
T 2yqz_A          190 PRTREV  195 (263)
T ss_dssp             CEEEEE
T ss_pred             cceEEE
Confidence            766543

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.39  E-value=3e-13  Score=128.12  Aligned_cols=118  Identities=12%  Similarity=0.080  Sum_probs=89.1

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEEE-
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM-  152 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~-  152 (523)
                      .++.+|||||||+|..+..+++..+ .+|+|||+|+.|++.|+++......++.++.+|+...  ..++++++||.|+. 
T Consensus        59 ~~G~rVLdiG~G~G~~~~~~~~~~~-~~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~--~~~~~~~~FD~i~~D  135 (236)
T 3orh_A           59 SKGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDV--APTLPDGHFDGILYD  135 (236)
T ss_dssp             TTCEEEEEECCTTSHHHHHHTTSCE-EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHH--GGGSCTTCEEEEEEC
T ss_pred             cCCCeEEEECCCccHHHHHHHHhCC-cEEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhh--cccccccCCceEEEe
Confidence            5788999999999999999988764 5799999999999999998877777899999988643  22467889999986 


Q ss_pred             --------------ccccccceeeecceEEecCCeEEEee------------------CHHHHHHHHHhCCCcEEEEEe
Q 009871          153 --------------ERLTGKDQKISENFYVRGDGTRAFYF------------------SNDFLTSLFKENGFDVEELGL  199 (523)
Q Consensus       153 --------------~~~~~~~~~~~~~~~~~~~g~~~~~~------------------~~~~l~~ll~~~Gf~~~~~~~  199 (523)
                                    ..++....+     +++|+|.+.|+.                  ..+.+...|.++||+...+..
T Consensus       136 ~~~~~~~~~~~~~~~~~~~e~~r-----vLkPGG~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~eaGF~~~~i~~  209 (236)
T 3orh_A          136 TYPLSEETWHTHQFNFIKNHAFR-----LLKPGGVLTYCNLTSWGELMKSKYSDITIMFEETQVPALLEAGFRRENIRT  209 (236)
T ss_dssp             CCCCBGGGTTTHHHHHHHHTHHH-----HEEEEEEEEECCHHHHHHHTTTTCSCHHHHHHHHTHHHHHHHTCCGGGEEE
T ss_pred             eeecccchhhhcchhhhhhhhhh-----eeCCCCEEEEEecCCchhhhhhhhhhhhhhhHHHHHHHHHHcCCeEEEEEE
Confidence                          111222333     688999887742                  133455667789998655543

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=99.39  E-value=5e-13  Score=124.46  Aligned_cols=128  Identities=16%  Similarity=0.241  Sum_probs=90.6

Q ss_pred             HhhhhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC-CCcEEEEEeeccCCccCCCCCCC
Q 009871           67 WGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT-ETRVSTFVCDLISDDLSRQISPS  145 (523)
Q Consensus        67 ~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~-~~~v~~~~~d~~~~~~~~~~~~~  145 (523)
                      |.+.++ .++.+|||||||+|.++..+++.+|+.+|+|||+|+.|++.|+++.... ..++.++++|+.++  +..++++
T Consensus        31 ~~~~f~-~~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l--~~~~~~~  107 (213)
T 2fca_A           31 WNTVFG-NDNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTL--TDVFEPG  107 (213)
T ss_dssp             HHHHHT-SCCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGH--HHHCCTT
T ss_pred             HHHHcC-CCCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHH--HhhcCcC
Confidence            333444 4678999999999999999999999999999999999999999876433 35799999999864  2125678


Q ss_pred             ceeEEEE---ccccccc---ee------eec-ceEEecCCeEEEeeC----HHHHHHHHHhCCCcEEEE
Q 009871          146 SIDIVTM---ERLTGKD---QK------ISE-NFYVRGDGTRAFYFS----NDFLTSLFKENGFDVEEL  197 (523)
Q Consensus       146 ~fD~V~~---~~~~~~~---~~------~~~-~~~~~~~g~~~~~~~----~~~l~~ll~~~Gf~~~~~  197 (523)
                      +||.|++   ..+....   .+      +.. ...++++|.+.+...    .+++.+.+.+.||.....
T Consensus       108 ~~d~v~~~~~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~g~~~~~~  176 (213)
T 2fca_A          108 EVKRVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNRGLFEYSLKSFSEYGLLLTYV  176 (213)
T ss_dssp             SCCEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCHHHHHHHHHHHHHHTCEEEEE
T ss_pred             CcCEEEEECCCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHCCCccccc
Confidence            9999987   1110100   00      000 125788888876441    345677788889876543

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=99.39  E-value=1.6e-12  Score=124.88  Aligned_cols=148  Identities=14%  Similarity=0.081  Sum_probs=106.9

Q ss_pred             hhHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcC-CCEEEEEcCChHHHHHHHHHHHh---cCCCCCCCceEEE
Q 009871          318 ESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTA---NLKPPFLAKLITK  393 (523)
Q Consensus       318 ~~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~-~~~V~~~D~~~~~l~~~~~n~~~---n~~~~~~~~v~~~  393 (523)
                      ..+.+|+.|+.    ..++.+|||||||+|.++..++.+. ..+|+++|+++.+++.+++|+..   |+..   .++.+.
T Consensus        23 ~D~~lL~~~~~----~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~---~~v~~~   95 (260)
T 2ozv_A           23 MDAMLLASLVA----DDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFS---ARIEVL   95 (260)
T ss_dssp             CHHHHHHHTCC----CCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTG---GGEEEE
T ss_pred             cHHHHHHHHhc----ccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCc---ceEEEE
Confidence            45677777653    3367799999999999998888886 45899999999999999999988   7664   467887


Q ss_pred             eeecCCCCcchhhhhhcCCCccEEEEccccCCC------------------CChHHHHHHHHHHhhccCCCCCCCCCcEE
Q 009871          394 RLEWGNRDHIEAIKEENNEGFEVILGTDVSYIP------------------EAILPLFATAKELTASSNKSLREDQQPAF  455 (523)
Q Consensus       394 ~ldw~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~------------------~~~~~l~~~l~~ll~~~~~~~~~~~~g~~  455 (523)
                      ..|+.+.........+...+||+|+++...+..                  ..+..+++.+.++|         +|+|.+
T Consensus        96 ~~D~~~~~~~~~~~~~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~L---------kpgG~l  166 (260)
T 2ozv_A           96 EADVTLRAKARVEAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIM---------VSGGQL  166 (260)
T ss_dssp             ECCTTCCHHHHHHTTCCTTCEEEEEECCCC---------------------CCHHHHHHHHHHHE---------EEEEEE
T ss_pred             eCCHHHHhhhhhhhccCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHc---------CCCCEE
Confidence            777765410000001345689999998555433                  24788999999999         679999


Q ss_pred             EEEEeecCCChhHHHHHHHHcCCEEEEEc
Q 009871          456 ILCHIFRQVDEPSMLSAATQCGFRLVDKW  484 (523)
Q Consensus       456 ~l~~~~r~~~~~~~~~~~~~~gf~~~~~~  484 (523)
                      ++.....  ...++++.+++. |...++.
T Consensus       167 ~~~~~~~--~~~~~~~~l~~~-~~~~~i~  192 (260)
T 2ozv_A          167 SLISRPQ--SVAEIIAACGSR-FGGLEIT  192 (260)
T ss_dssp             EEEECGG--GHHHHHHHHTTT-EEEEEEE
T ss_pred             EEEEcHH--HHHHHHHHHHhc-CCceEEE
Confidence            9876543  345677877765 7766553

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=99.39  E-value=1.3e-12  Score=127.35  Aligned_cols=76  Identities=13%  Similarity=0.099  Sum_probs=66.3

Q ss_pred             cCCCCCeEEEECCCccccHHHHHhhCC-CCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEE
Q 009871           72 SGAGRKDVLEVGCGAGNTIFPLIAAYP-DVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIV  150 (523)
Q Consensus        72 ~~~~~~~iLDiGcG~G~~~~~l~~~~~-~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V  150 (523)
                      ...++.+|||||||+|..+..+++.+| +.+|+|+|+|+.|++.|+++....+.++++.++|+.+.    ++ +++||+|
T Consensus        19 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~----~~-~~~fD~v   93 (284)
T 3gu3_A           19 KITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEI----EL-NDKYDIA   93 (284)
T ss_dssp             CCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTC----CC-SSCEEEE
T ss_pred             ccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchhhc----Cc-CCCeeEE
Confidence            445788999999999999999999987 48999999999999999998765556899999999976    44 4689999


Q ss_pred             EE
Q 009871          151 TM  152 (523)
Q Consensus       151 ~~  152 (523)
                      ++
T Consensus        94 ~~   95 (284)
T 3gu3_A           94 IC   95 (284)
T ss_dssp             EE
T ss_pred             EE
Confidence            99

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=99.39  E-value=3.5e-13  Score=132.83  Aligned_cols=74  Identities=19%  Similarity=0.195  Sum_probs=63.9

Q ss_pred             CCCCeEEEECCCccccHHHHH-hhCCCCEEEEEeCCHHHHHHHHhccccCC--CcEEEEEeeccCCccCCCCCCCceeEE
Q 009871           74 AGRKDVLEVGCGAGNTIFPLI-AAYPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQISPSSIDIV  150 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~-~~~~~~~v~gvD~S~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~V  150 (523)
                      .++.+|||||||+|..+..++ ...++.+|+|+|+|+.|++.|+++....+  .+++++++|+.++    +++ ++||+|
T Consensus       117 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~~~-~~fD~v  191 (305)
T 3ocj_A          117 RPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKL----DTR-EGYDLL  191 (305)
T ss_dssp             CTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGC----CCC-SCEEEE
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcC----Ccc-CCeEEE
Confidence            578899999999999999986 45778899999999999999999875432  4599999999977    555 899999


Q ss_pred             EE
Q 009871          151 TM  152 (523)
Q Consensus       151 ~~  152 (523)
                      ++
T Consensus       192 ~~  193 (305)
T 3ocj_A          192 TS  193 (305)
T ss_dssp             EC
T ss_pred             EE
Confidence            99

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=99.39  E-value=1.7e-12  Score=127.16  Aligned_cols=108  Identities=17%  Similarity=0.121  Sum_probs=86.4

Q ss_pred             CCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhh-cCC
Q 009871          334 VAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEE-NNE  412 (523)
Q Consensus       334 ~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~-~~~  412 (523)
                      .++.+|||||||+|.++..++..+..+|+++|+++.+++.+++++..++..   .++.+...|..+.       ++ .++
T Consensus        63 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~---~~v~~~~~d~~~~-------~~~~~~  132 (298)
T 1ri5_A           63 KRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRR---FKVFFRAQDSYGR-------HMDLGK  132 (298)
T ss_dssp             CTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCS---SEEEEEESCTTTS-------CCCCSS
T ss_pred             CCCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCC---ccEEEEECCcccc-------ccCCCC
Confidence            367899999999998888887777669999999999999999998876553   4567776666543       12 356


Q ss_pred             CccEEEEccccCC----CCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEe
Q 009871          413 GFEVILGTDVSYI----PEAILPLFATAKELTASSNKSLREDQQPAFILCHI  460 (523)
Q Consensus       413 ~fD~Ii~~d~~y~----~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~  460 (523)
                      +||+|++..++++    ......+++.+.++|         +|||.+++...
T Consensus       133 ~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~L---------kpgG~l~~~~~  175 (298)
T 1ri5_A          133 EFDVISSQFSFHYAFSTSESLDIAQRNIARHL---------RPGGYFIMTVP  175 (298)
T ss_dssp             CEEEEEEESCGGGGGSSHHHHHHHHHHHHHTE---------EEEEEEEEEEE
T ss_pred             CcCEEEECchhhhhcCCHHHHHHHHHHHHHhc---------CCCCEEEEEEC
Confidence            8999999998865    456788999999999         67999987754

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=99.39  E-value=3.3e-12  Score=123.92  Aligned_cols=125  Identities=12%  Similarity=0.137  Sum_probs=98.6

Q ss_pred             CCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCc
Q 009871          335 AGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGF  414 (523)
Q Consensus       335 ~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~f  414 (523)
                      ++.+|||+|||+|.++..++..++.+|+++|+|+.+++.+++|+..|++.   .++.+...|..+..        ...+|
T Consensus       125 ~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~n~~~n~~~---~~v~~~~~D~~~~~--------~~~~f  193 (278)
T 2frn_A          125 PDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVE---DRMSAYNMDNRDFP--------GENIA  193 (278)
T ss_dssp             TTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCT---TTEEEECSCTTTCC--------CCSCE
T ss_pred             CCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcCCC---ceEEEEECCHHHhc--------ccCCc
Confidence            58899999999999999999888778999999999999999999999885   45677666554431        14689


Q ss_pred             cEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecC-----CChhHHHHHHHHcCCEEEEE
Q 009871          415 EVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ-----VDEPSMLSAATQCGFRLVDK  483 (523)
Q Consensus       415 D~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~-----~~~~~~~~~~~~~gf~~~~~  483 (523)
                      |+|++...    .....++..+.++|         +|||.++++.....     .....+.+.+++.||++..+
T Consensus       194 D~Vi~~~p----~~~~~~l~~~~~~L---------kpgG~l~~~~~~~~~~~~~~~~~~i~~~~~~~G~~~~~~  254 (278)
T 2frn_A          194 DRILMGYV----VRTHEFIPKALSIA---------KDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDVEKL  254 (278)
T ss_dssp             EEEEECCC----SSGGGGHHHHHHHE---------EEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEEEEE
T ss_pred             cEEEECCc----hhHHHHHHHHHHHC---------CCCeEEEEEEeeccccccccHHHHHHHHHHHcCCeeEEe
Confidence            99998532    34467889999999         67999988766531     22356778888999998773

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=99.39  E-value=1.7e-12  Score=123.27  Aligned_cols=71  Identities=20%  Similarity=0.208  Sum_probs=61.5

Q ss_pred             CCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871           75 GRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM  152 (523)
Q Consensus        75 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~  152 (523)
                      ++.+|||||||+|.++..+++.  +.+|+|+|+|+.|++.|+++......++++.++|+.++    +++ ++||+|++
T Consensus        37 ~~~~vLdiG~G~G~~~~~l~~~--~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~----~~~-~~fD~v~~  107 (246)
T 1y8c_A           37 VFDDYLDLACGTGNLTENLCPK--FKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNL----NIN-RKFDLITC  107 (246)
T ss_dssp             CTTEEEEETCTTSTTHHHHGGG--SSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGC----CCS-CCEEEEEE
T ss_pred             CCCeEEEeCCCCCHHHHHHHHC--CCcEEEEECCHHHHHHHHHHHhhcCCCeEEEecccccC----Ccc-CCceEEEE
Confidence            6789999999999999999988  56799999999999999987654444789999999876    444 78999998

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=99.38  E-value=1.5e-12  Score=118.51  Aligned_cols=134  Identities=12%  Similarity=0.132  Sum_probs=100.1

Q ss_pred             HHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcch
Q 009871          325 AVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIE  404 (523)
Q Consensus       325 ~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~  404 (523)
                      .++.......++.+|||+|||+|.++..++..+ .+|+++|+++.+++.+++|+..++..   .++.+...|+.+     
T Consensus        23 ~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~-~~v~~~D~~~~~~~~a~~~~~~~~~~---~~~~~~~~d~~~-----   93 (192)
T 1l3i_A           23 CLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRV-RRVYAIDRNPEAISTTEMNLQRHGLG---DNVTLMEGDAPE-----   93 (192)
T ss_dssp             HHHHHHHCCCTTCEEEEESCTTSHHHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCC---TTEEEEESCHHH-----
T ss_pred             HHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhc-CEEEEEECCHHHHHHHHHHHHHcCCC---cceEEEecCHHH-----
Confidence            333333344578899999999998888888877 79999999999999999999988763   356665554432     


Q ss_pred             hhhhhcC-CCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhHHHHHHHHcCCEEEEE
Q 009871          405 AIKEENN-EGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLVDK  483 (523)
Q Consensus       405 ~~~~~~~-~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~~~~~~~~gf~~~~~  483 (523)
                         .++. .+||+|++..++   ..+..+++.+.++|         +|+|.+++..... .....+.+.+++.||.+..+
T Consensus        94 ---~~~~~~~~D~v~~~~~~---~~~~~~l~~~~~~l---------~~gG~l~~~~~~~-~~~~~~~~~l~~~g~~~~~~  157 (192)
T 1l3i_A           94 ---ALCKIPDIDIAVVGGSG---GELQEILRIIKDKL---------KPGGRIIVTAILL-ETKFEAMECLRDLGFDVNIT  157 (192)
T ss_dssp             ---HHTTSCCEEEEEESCCT---TCHHHHHHHHHHTE---------EEEEEEEEEECBH-HHHHHHHHHHHHTTCCCEEE
T ss_pred             ---hcccCCCCCEEEECCch---HHHHHHHHHHHHhc---------CCCcEEEEEecCc-chHHHHHHHHHHCCCceEEE
Confidence               1122 489999998654   35789999999999         6799998876542 23456788889999966543

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=99.38  E-value=1.1e-12  Score=133.48  Aligned_cols=124  Identities=19%  Similarity=0.228  Sum_probs=92.1

Q ss_pred             CCCCeEEEECCCccccHHHHHhhC-CCCEEEEEeCCHHHHHHHHhcccc---------CCCcEEEEEeeccCCcc--CCC
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAY-PDVFVYACDFSPRAVNLVMTHKDF---------TETRVSTFVCDLISDDL--SRQ  141 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~-~~~~v~gvD~S~~~l~~a~~~~~~---------~~~~v~~~~~d~~~~~~--~~~  141 (523)
                      .++.+|||||||+|..+..+++.. ++.+|+|+|+|+.|++.|+++...         ...+++++++|+.++..  +.+
T Consensus        82 ~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~  161 (383)
T 4fsd_A           82 LEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEG  161 (383)
T ss_dssp             GTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCC
T ss_pred             CCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCC
Confidence            467899999999999999999884 778999999999999999997532         22689999999986421  114


Q ss_pred             CCCCceeEEEEcc----------ccccceeeecceEEecCCeEEEe--------------------------eCHHHHHH
Q 009871          142 ISPSSIDIVTMER----------LTGKDQKISENFYVRGDGTRAFY--------------------------FSNDFLTS  185 (523)
Q Consensus       142 ~~~~~fD~V~~~~----------~~~~~~~~~~~~~~~~~g~~~~~--------------------------~~~~~l~~  185 (523)
                      +++++||+|++..          ++....+     .++++|.+++.                          ++.+++.+
T Consensus       162 ~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r-----~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (383)
T 4fsd_A          162 VPDSSVDIVISNCVCNLSTNKLALFKEIHR-----VLRDGGELYFSDVYADRRLSEAAQQDPILYGECLGGALYLEDFRR  236 (383)
T ss_dssp             CCTTCEEEEEEESCGGGCSCHHHHHHHHHH-----HEEEEEEEEEEEEEESSCCCHHHHHCHHHHHTTCTTCCBHHHHHH
T ss_pred             CCCCCEEEEEEccchhcCCCHHHHHHHHHH-----HcCCCCEEEEEEeccccccCHhHhhhHHHhhcccccCCCHHHHHH
Confidence            6788999999911          1111111     45566655431                          46699999


Q ss_pred             HHHhCCCcEEEEEeEee
Q 009871          186 LFKENGFDVEELGLCCK  202 (523)
Q Consensus       186 ll~~~Gf~~~~~~~~~~  202 (523)
                      +|+++||..+++.....
T Consensus       237 ll~~aGF~~v~~~~~~~  253 (383)
T 4fsd_A          237 LVAEAGFRDVRLVSVGP  253 (383)
T ss_dssp             HHHHTTCCCEEEEEEEE
T ss_pred             HHHHCCCceEEEEeccc
Confidence            99999999877655443

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=99.38  E-value=3.6e-12  Score=120.83  Aligned_cols=127  Identities=13%  Similarity=0.139  Sum_probs=96.7

Q ss_pred             CCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCC
Q 009871          333 IVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNE  412 (523)
Q Consensus       333 ~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~  412 (523)
                      ..++.+|||||||+|.++..++..+. +|+++|+|+.+++.++++            +.+...|.     ...+.+++++
T Consensus        39 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~------------~~~~~~d~-----~~~~~~~~~~  100 (240)
T 3dli_A           39 FKGCRRVLDIGCGRGEFLELCKEEGI-ESIGVDINEDMIKFCEGK------------FNVVKSDA-----IEYLKSLPDK  100 (240)
T ss_dssp             TTTCSCEEEETCTTTHHHHHHHHHTC-CEEEECSCHHHHHHHHTT------------SEEECSCH-----HHHHHTSCTT
T ss_pred             hcCCCeEEEEeCCCCHHHHHHHhCCC-cEEEEECCHHHHHHHHhh------------cceeeccH-----HHHhhhcCCC
Confidence            34678999999999998888888755 699999999999998865            23322221     1111244567


Q ss_pred             CccEEEEccccCCCC--ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec-----------------CCChhHHHHHH
Q 009871          413 GFEVILGTDVSYIPE--AILPLFATAKELTASSNKSLREDQQPAFILCHIFR-----------------QVDEPSMLSAA  473 (523)
Q Consensus       413 ~fD~Ii~~d~~y~~~--~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r-----------------~~~~~~~~~~~  473 (523)
                      +||+|++..++++..  .+..+++.+.++|         +|||.+++.....                 ..+...+.+.+
T Consensus       101 ~fD~i~~~~~l~~~~~~~~~~~l~~~~~~L---------kpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l  171 (240)
T 3dli_A          101 YLDGVMISHFVEHLDPERLFELLSLCYSKM---------KYSSYIVIESPNPTSLYSLINFYIDPTHKKPVHPETLKFIL  171 (240)
T ss_dssp             CBSEEEEESCGGGSCGGGHHHHHHHHHHHB---------CTTCCEEEEEECTTSHHHHHHHTTSTTCCSCCCHHHHHHHH
T ss_pred             CeeEEEECCchhhCCcHHHHHHHHHHHHHc---------CCCcEEEEEeCCcchhHHHHHHhcCccccccCCHHHHHHHH
Confidence            999999999998877  6699999999999         7799998876542                 12345678889


Q ss_pred             HHcCCEEEEEcCC
Q 009871          474 TQCGFRLVDKWPS  486 (523)
Q Consensus       474 ~~~gf~~~~~~~~  486 (523)
                      +++||++.++...
T Consensus       172 ~~aGf~~~~~~~~  184 (240)
T 3dli_A          172 EYLGFRDVKIEFF  184 (240)
T ss_dssp             HHHTCEEEEEEEE
T ss_pred             HHCCCeEEEEEEe
Confidence            9999999887543

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=99.38  E-value=1.7e-12  Score=121.81  Aligned_cols=123  Identities=7%  Similarity=0.048  Sum_probs=95.4

Q ss_pred             CCCeEEEECCCccHHHHHHHhcCC-CEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCC-
Q 009871          335 AGKKVLELGCGCGGICSMVAAGSA-DLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNE-  412 (523)
Q Consensus       335 ~~~~VLElG~G~G~l~~~~a~~~~-~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~-  412 (523)
                      ++.+|||+|||+|.++..++..+. .+|+++|+++.+++.|++|++.|++.   .++.+...|+.+.        +.+. 
T Consensus        21 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~---~~I~v~~gD~l~~--------~~~~~   89 (244)
T 3gnl_A           21 KNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLT---EQIDVRKGNGLAV--------IEKKD   89 (244)
T ss_dssp             SSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCT---TTEEEEECSGGGG--------CCGGG
T ss_pred             CCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC---ceEEEEecchhhc--------cCccc
Confidence            678999999999999999998874 48999999999999999999999985   5677776655432        1222 


Q ss_pred             CccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhHHHHHHHHcCCEEEE
Q 009871          413 GFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLVD  482 (523)
Q Consensus       413 ~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~~~~~~~~gf~~~~  482 (523)
                      +||+|+.+-+.-  +.+..++......|         ++++.++++..   ...+.+.+.+.+.||.+.+
T Consensus        90 ~~D~IviagmGg--~lI~~IL~~~~~~L---------~~~~~lIlq~~---~~~~~lr~~L~~~Gf~i~~  145 (244)
T 3gnl_A           90 AIDTIVIAGMGG--TLIRTILEEGAAKL---------AGVTKLILQPN---IAAWQLREWSEQNNWLITS  145 (244)
T ss_dssp             CCCEEEEEEECH--HHHHHHHHHTGGGG---------TTCCEEEEEES---SCHHHHHHHHHHHTEEEEE
T ss_pred             cccEEEEeCCch--HHHHHHHHHHHHHh---------CCCCEEEEEcC---CChHHHHHHHHHCCCEEEE
Confidence            599988653222  44666777777777         56889888864   3677889999999999854

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=99.37  E-value=4.7e-13  Score=128.06  Aligned_cols=68  Identities=26%  Similarity=0.449  Sum_probs=60.6

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM  152 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~  152 (523)
                      +.+.+|||||||+|..+..|++.+  .+|+|+|+|+.|++.|+++     .++++.++|++++    ++++++||+|++
T Consensus        38 ~~~~~vLDvGcGtG~~~~~l~~~~--~~v~gvD~s~~ml~~a~~~-----~~v~~~~~~~e~~----~~~~~sfD~v~~  105 (257)
T 4hg2_A           38 PARGDALDCGCGSGQASLGLAEFF--ERVHAVDPGEAQIRQALRH-----PRVTYAVAPAEDT----GLPPASVDVAIA  105 (257)
T ss_dssp             SCSSEEEEESCTTTTTHHHHHTTC--SEEEEEESCHHHHHTCCCC-----TTEEEEECCTTCC----CCCSSCEEEEEE
T ss_pred             CCCCCEEEEcCCCCHHHHHHHHhC--CEEEEEeCcHHhhhhhhhc-----CCceeehhhhhhh----cccCCcccEEEE
Confidence            356789999999999999999885  5699999999999988764     5799999999988    788999999999

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=99.37  E-value=1.4e-12  Score=127.61  Aligned_cols=112  Identities=15%  Similarity=0.243  Sum_probs=84.6

Q ss_pred             CCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCC
Q 009871          334 VAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG  413 (523)
Q Consensus       334 ~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~  413 (523)
                      .++.+|||||||+|.++..++..+. +|+++|+|+.|++.+++|+..........++.+...++.+..  ..+  +..++
T Consensus        56 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~--~~~~~  130 (293)
T 3thr_A           56 HGCHRVLDVACGTGVDSIMLVEEGF-SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLD--KDV--PAGDG  130 (293)
T ss_dssp             TTCCEEEETTCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHH--HHS--CCTTC
T ss_pred             cCCCEEEEecCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCc--ccc--ccCCC
Confidence            3678999999999988888888865 899999999999999998865443322234455554443210  000  34579


Q ss_pred             ccEEEEc-cccCCCCC-------hHHHHHHHHHHhhccCCCCCCCCCcEEEEEE
Q 009871          414 FEVILGT-DVSYIPEA-------ILPLFATAKELTASSNKSLREDQQPAFILCH  459 (523)
Q Consensus       414 fD~Ii~~-d~~y~~~~-------~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~  459 (523)
                      ||+|++. .++.+...       ...+++.+.++|         +|||.+++..
T Consensus       131 fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~L---------kpgG~l~~~~  175 (293)
T 3thr_A          131 FDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMV---------RPGGLLVIDH  175 (293)
T ss_dssp             EEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTE---------EEEEEEEEEE
T ss_pred             eEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHc---------CCCeEEEEEe
Confidence            9999998 89888777       999999999999         6788888754

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=99.37  E-value=6.1e-12  Score=114.17  Aligned_cols=131  Identities=15%  Similarity=0.065  Sum_probs=88.0

Q ss_pred             CCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCC
Q 009871          334 VAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG  413 (523)
Q Consensus       334 ~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~  413 (523)
                      .++.+|||+|||+|.++..++.. +.+|+++|+|+.|++.|++|+..++.    .++.+...+.      ..+..+.+++
T Consensus        21 ~~~~~vLDiGcG~G~~~~~la~~-~~~v~~vD~s~~~l~~a~~~~~~~~~----~~v~~~~~~~------~~l~~~~~~~   89 (185)
T 3mti_A           21 DDESIVVDATMGNGNDTAFLAGL-SKKVYAFDVQEQALGKTSQRLSDLGI----ENTELILDGH------ENLDHYVREP   89 (185)
T ss_dssp             CTTCEEEESCCTTSHHHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHHTC----CCEEEEESCG------GGGGGTCCSC
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCC----CcEEEEeCcH------HHHHhhccCC
Confidence            47889999999999988888888 67899999999999999999998876    3455544222      1222234678


Q ss_pred             ccEEEEccccCCC----------CChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCC---h-hHH---HHHHHHc
Q 009871          414 FEVILGTDVSYIP----------EAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVD---E-PSM---LSAATQC  476 (523)
Q Consensus       414 fD~Ii~~d~~y~~----------~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~---~-~~~---~~~~~~~  476 (523)
                      ||+|+++- .|.+          .....+++.+.++|         +|||.++++.......   + ..+   +..+...
T Consensus        90 fD~v~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~L---------kpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~~~  159 (185)
T 3mti_A           90 IRAAIFNL-GYLPSADKSVITKPHTTLEAIEKILDRL---------EVGGRLAIMIYYGHDGGDMEKDAVLEYVIGLDQR  159 (185)
T ss_dssp             EEEEEEEE-C-----------CHHHHHHHHHHHHHHE---------EEEEEEEEEEC------CHHHHHHHHHHHHSCTT
T ss_pred             cCEEEEeC-CCCCCcchhcccChhhHHHHHHHHHHhc---------CCCcEEEEEEeCCCCCCHHHHHHHHHHHHhCCCc
Confidence            99998762 2221          33456778888999         6799998765542221   1 222   3333346


Q ss_pred             CCEEEEEcC
Q 009871          477 GFRLVDKWP  485 (523)
Q Consensus       477 gf~~~~~~~  485 (523)
                      +|.+.....
T Consensus       160 ~~~~~~~~~  168 (185)
T 3mti_A          160 VFTAMLYQP  168 (185)
T ss_dssp             TEEEEEEEE
T ss_pred             eEEEEEehh
Confidence            688776644

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=99.37  E-value=1e-12  Score=122.76  Aligned_cols=75  Identities=23%  Similarity=0.317  Sum_probs=64.4

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCC------CcEEEEEeeccCCccCCCCCCCce
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE------TRVSTFVCDLISDDLSRQISPSSI  147 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~------~~v~~~~~d~~~~~~~~~~~~~~f  147 (523)
                      .++.+|||||||+|.++..+++.++..+|+|+|+|+.|++.|+++.....      .+++++++|+...    ++++++|
T Consensus        28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~----~~~~~~f  103 (219)
T 3jwg_A           28 VNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYR----DKRFSGY  103 (219)
T ss_dssp             TTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSC----CGGGTTC
T ss_pred             cCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCccccc----ccccCCC
Confidence            56789999999999999999998877899999999999999998764321      2799999999766    5567899


Q ss_pred             eEEEE
Q 009871          148 DIVTM  152 (523)
Q Consensus       148 D~V~~  152 (523)
                      |+|++
T Consensus       104 D~V~~  108 (219)
T 3jwg_A          104 DAATV  108 (219)
T ss_dssp             SEEEE
T ss_pred             CEEEE
Confidence            99999

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=99.37  E-value=4.4e-12  Score=114.49  Aligned_cols=133  Identities=14%  Similarity=0.155  Sum_probs=98.5

Q ss_pred             HHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCc
Q 009871          323 MAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDH  402 (523)
Q Consensus       323 la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~  402 (523)
                      +..++.......++.+|||+|||+|.++..++. ...+|+++|+++.+++.+++|+..++.    .++.+...|+.+   
T Consensus        23 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~----~~~~~~~~d~~~---   94 (183)
T 2yxd_A           23 IRAVSIGKLNLNKDDVVVDVGCGSGGMTVEIAK-RCKFVYAIDYLDGAIEVTKQNLAKFNI----KNCQIIKGRAED---   94 (183)
T ss_dssp             HHHHHHHHHCCCTTCEEEEESCCCSHHHHHHHT-TSSEEEEEECSHHHHHHHHHHHHHTTC----CSEEEEESCHHH---
T ss_pred             HHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHHcCC----CcEEEEECCccc---
Confidence            333443333445788999999999988888877 667999999999999999999998876    346666655532   


Q ss_pred             chhhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhHHHHHHHHcCCEEEE
Q 009871          403 IEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLVD  482 (523)
Q Consensus       403 ~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~~~~~~~~gf~~~~  482 (523)
                           .++.++||+|+++.+    .....+++.+.++           |+|.+++.... ......+.+.++++||.++.
T Consensus        95 -----~~~~~~~D~i~~~~~----~~~~~~l~~~~~~-----------~gG~l~~~~~~-~~~~~~~~~~l~~~g~~~~~  153 (183)
T 2yxd_A           95 -----VLDKLEFNKAFIGGT----KNIEKIIEILDKK-----------KINHIVANTIV-LENAAKIINEFESRGYNVDA  153 (183)
T ss_dssp             -----HGGGCCCSEEEECSC----SCHHHHHHHHHHT-----------TCCEEEEEESC-HHHHHHHHHHHHHTTCEEEE
T ss_pred             -----cccCCCCcEEEECCc----ccHHHHHHHHhhC-----------CCCEEEEEecc-cccHHHHHHHHHHcCCeEEE
Confidence                 123368999999977    6677777776655           28888887644 22345688899999998877


Q ss_pred             Ec
Q 009871          483 KW  484 (523)
Q Consensus       483 ~~  484 (523)
                      +.
T Consensus       154 ~~  155 (183)
T 2yxd_A          154 VN  155 (183)
T ss_dssp             EE
T ss_pred             EE
Confidence            63

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=99.37  E-value=4.8e-13  Score=126.97  Aligned_cols=116  Identities=16%  Similarity=0.192  Sum_probs=82.6

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEEE-
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM-  152 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~-  152 (523)
                      .++.+|||||||+|.++..+++.  +.+|+|+|+|+.|++.|+++       ++++++|+.+.  ..++++++||+|++ 
T Consensus        40 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~-------~~~~~~d~~~~--~~~~~~~~fD~i~~~  108 (240)
T 3dli_A           40 KGCRRVLDIGCGRGEFLELCKEE--GIESIGVDINEDMIKFCEGK-------FNVVKSDAIEY--LKSLPDKYLDGVMIS  108 (240)
T ss_dssp             TTCSCEEEETCTTTHHHHHHHHH--TCCEEEECSCHHHHHHHHTT-------SEEECSCHHHH--HHTSCTTCBSEEEEE
T ss_pred             cCCCeEEEEeCCCCHHHHHHHhC--CCcEEEEECCHHHHHHHHhh-------cceeeccHHHH--hhhcCCCCeeEEEEC
Confidence            46789999999999999999988  55699999999999999986       67888888652  11467899999999 


Q ss_pred             ---cccccc--ceeeec-ceEEecCCeEE----------------------EeeCHHHHHHHHHhCCCcEEEEEeE
Q 009871          153 ---ERLTGK--DQKISE-NFYVRGDGTRA----------------------FYFSNDFLTSLFKENGFDVEELGLC  200 (523)
Q Consensus       153 ---~~~~~~--~~~~~~-~~~~~~~g~~~----------------------~~~~~~~l~~ll~~~Gf~~~~~~~~  200 (523)
                         ..+..+  ...+.. ...++++|.++                      .+++.+++.++++++||+++.+...
T Consensus       109 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~  184 (240)
T 3dli_A          109 HFVEHLDPERLFELLSLCYSKMKYSSYIVIESPNPTSLYSLINFYIDPTHKKPVHPETLKFILEYLGFRDVKIEFF  184 (240)
T ss_dssp             SCGGGSCGGGHHHHHHHHHHHBCTTCCEEEEEECTTSHHHHHHHTTSTTCCSCCCHHHHHHHHHHHTCEEEEEEEE
T ss_pred             CchhhCCcHHHHHHHHHHHHHcCCCcEEEEEeCCcchhHHHHHHhcCccccccCCHHHHHHHHHHCCCeEEEEEEe
Confidence               111000  000000 11344554443                      2458899999999999998766543

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=99.37  E-value=2.6e-12  Score=119.32  Aligned_cols=104  Identities=19%  Similarity=0.264  Sum_probs=80.9

Q ss_pred             hhHHHHHHHHhccc----ccccchhhhHHHHhhhhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHH
Q 009871           41 AKKYWDLFYKRHQD----RFFKDRHYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVM  116 (523)
Q Consensus        41 ~~~~Wd~~y~~~~~----~f~~~~~~l~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~  116 (523)
                      ..+||+.+|.....    .++.....+...+...+  .++.+|||+|||+|.++..+++.++. +|+|+|+|+.|++.|+
T Consensus         6 ~~~~W~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~vLdiGcG~G~~~~~l~~~~~~-~v~~~D~s~~~~~~a~   82 (215)
T 2pxx_A            6 EVEYWDQRYQGAADSAPYDWFGDFSSFRALLEPEL--RPEDRILVLGCGNSALSYELFLGGFP-NVTSVDYSSVVVAAMQ   82 (215)
T ss_dssp             CHHHHHHHTTTTTTSCCCCTTCCHHHHHHHHGGGC--CTTCCEEEETCTTCSHHHHHHHTTCC-CEEEEESCHHHHHHHH
T ss_pred             chhHHHHHhccCCCCCCcccccCHHHHHHHHHHhc--CCCCeEEEECCCCcHHHHHHHHcCCC-cEEEEeCCHHHHHHHH
Confidence            35799999987652    34444444444444443  46789999999999999999988543 6999999999999999


Q ss_pred             hccccCCCcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871          117 THKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM  152 (523)
Q Consensus       117 ~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~  152 (523)
                      ++... ..++++.++|+.++    ++++++||+|++
T Consensus        83 ~~~~~-~~~i~~~~~d~~~~----~~~~~~fD~v~~  113 (215)
T 2pxx_A           83 ACYAH-VPQLRWETMDVRKL----DFPSASFDVVLE  113 (215)
T ss_dssp             HHTTT-CTTCEEEECCTTSC----CSCSSCEEEEEE
T ss_pred             Hhccc-CCCcEEEEcchhcC----CCCCCcccEEEE
Confidence            97643 35789999999876    567789999998

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=99.37  E-value=2.5e-12  Score=119.92  Aligned_cols=75  Identities=20%  Similarity=0.260  Sum_probs=64.3

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCC------CcEEEEEeeccCCccCCCCCCCce
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE------TRVSTFVCDLISDDLSRQISPSSI  147 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~------~~v~~~~~d~~~~~~~~~~~~~~f  147 (523)
                      .++.+|||||||+|.++..+++.++..+|+|+|+|+.|++.|+++.....      .++++.++|+...    +.++++|
T Consensus        28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~----~~~~~~f  103 (217)
T 3jwh_A           28 SNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQ----DKRFHGY  103 (217)
T ss_dssp             TTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSC----CGGGCSC
T ss_pred             cCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccc----cccCCCc
Confidence            56789999999999999999998877899999999999999999764322      2799999999765    4556899


Q ss_pred             eEEEE
Q 009871          148 DIVTM  152 (523)
Q Consensus       148 D~V~~  152 (523)
                      |+|++
T Consensus       104 D~v~~  108 (217)
T 3jwh_A          104 DAATV  108 (217)
T ss_dssp             SEEEE
T ss_pred             CEEee
Confidence            99999

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=99.37  E-value=4.8e-12  Score=116.85  Aligned_cols=115  Identities=9%  Similarity=0.115  Sum_probs=87.7

Q ss_pred             hhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC-CCcEEEEEeeccCCccCCCCCCCcee
Q 009871           70 YFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT-ETRVSTFVCDLISDDLSRQISPSSID  148 (523)
Q Consensus        70 ~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~-~~~v~~~~~d~~~~~~~~~~~~~~fD  148 (523)
                      .+...++.+|||+|||+|..+..+++.+|..+|+|+|+|+.|++.|+++.... ..+++++++|+.+.    ....++||
T Consensus        35 ~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~----~~~~~~~D  110 (204)
T 3e05_A           35 KLRLQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEG----LDDLPDPD  110 (204)
T ss_dssp             HTTCCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTT----CTTSCCCS
T ss_pred             HcCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhh----hhcCCCCC
Confidence            34446788999999999999999999988899999999999999999976432 26799999999654    22236799


Q ss_pred             EEEEcc-------ccccceeeecceEEecCCeEEEee----CHHHHHHHHHhCCCc
Q 009871          149 IVTMER-------LTGKDQKISENFYVRGDGTRAFYF----SNDFLTSLFKENGFD  193 (523)
Q Consensus       149 ~V~~~~-------~~~~~~~~~~~~~~~~~g~~~~~~----~~~~l~~ll~~~Gf~  193 (523)
                      +|++..       ++....+     .++++|.+++..    +.+++.+.++++||.
T Consensus       111 ~i~~~~~~~~~~~~l~~~~~-----~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~  161 (204)
T 3e05_A          111 RVFIGGSGGMLEEIIDAVDR-----RLKSEGVIVLNAVTLDTLTKAVEFLEDHGYM  161 (204)
T ss_dssp             EEEESCCTTCHHHHHHHHHH-----HCCTTCEEEEEECBHHHHHHHHHHHHHTTCE
T ss_pred             EEEECCCCcCHHHHHHHHHH-----hcCCCeEEEEEecccccHHHHHHHHHHCCCc
Confidence            999921       1112222     577888877642    456788999999993

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=99.37  E-value=1.1e-11  Score=120.72  Aligned_cols=116  Identities=9%  Similarity=0.015  Sum_probs=91.8

Q ss_pred             HHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcC--CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCC
Q 009871          324 AAVLARNPTIVAGKKVLELGCGCGGICSMVAAGS--ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRD  401 (523)
Q Consensus       324 a~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~  401 (523)
                      ...+.......++.+|||+|||+|.++..++...  ..+|+++|+|+.+++.+++++..++.     ++.+...|..+. 
T Consensus        11 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-----~v~~~~~d~~~~-   84 (284)
T 3gu3_A           11 SFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY-----DSEFLEGDATEI-   84 (284)
T ss_dssp             HHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSS-----EEEEEESCTTTC-
T ss_pred             HHHHHHHhccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCC-----ceEEEEcchhhc-
Confidence            3333333455678899999999998888888773  36899999999999999999876432     566766665542 


Q ss_pred             cchhhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee
Q 009871          402 HIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIF  461 (523)
Q Consensus       402 ~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~  461 (523)
                            ++ +++||+|++..++++......+++.+.++|         +|||.+++....
T Consensus        85 ------~~-~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L---------kpgG~l~~~~~~  128 (284)
T 3gu3_A           85 ------EL-NDKYDIAICHAFLLHMTTPETMLQKMIHSV---------KKGGKIICFEPH  128 (284)
T ss_dssp             ------CC-SSCEEEEEEESCGGGCSSHHHHHHHHHHTE---------EEEEEEEEEECC
T ss_pred             ------Cc-CCCeeEEEECChhhcCCCHHHHHHHHHHHc---------CCCCEEEEEecc
Confidence                  12 358999999999999999999999999999         679999987654

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=99.37  E-value=4.5e-12  Score=128.86  Aligned_cols=139  Identities=16%  Similarity=0.215  Sum_probs=106.2

Q ss_pred             CCCCCeEEEECCCccHHHHHHHhc--CCCEEEEEcCChHHHHHHHHHHHhc-----C-CCCCCCceEEEeeecCCCCcch
Q 009871          333 IVAGKKVLELGCGCGGICSMVAAG--SADLVVATDGDSIALDLLAQNVTAN-----L-KPPFLAKLITKRLEWGNRDHIE  404 (523)
Q Consensus       333 ~~~~~~VLElG~G~G~l~~~~a~~--~~~~V~~~D~~~~~l~~~~~n~~~n-----~-~~~~~~~v~~~~ldw~~~~~~~  404 (523)
                      ..++.+|||||||+|.++..++..  ...+|+++|+++.+++.+++|+..+     + ..  ..++.+...|+.+.....
T Consensus        81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~--~~~v~~~~~d~~~l~~~~  158 (383)
T 4fsd_A           81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPS--RSNVRFLKGFIENLATAE  158 (383)
T ss_dssp             GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTT--CCCEEEEESCTTCGGGCB
T ss_pred             CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccC--CCceEEEEccHHHhhhcc
Confidence            457889999999999888888876  2459999999999999999998765     2 21  146777777665421110


Q ss_pred             hhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecC---------------------
Q 009871          405 AIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ---------------------  463 (523)
Q Consensus       405 ~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~---------------------  463 (523)
                      . .++++++||+|+++.++++......+++.+.++|         +|||.+++......                     
T Consensus       159 ~-~~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~L---------kpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (383)
T 4fsd_A          159 P-EGVPDSSVDIVISNCVCNLSTNKLALFKEIHRVL---------RDGGELYFSDVYADRRLSEAAQQDPILYGECLGGA  228 (383)
T ss_dssp             S-CCCCTTCEEEEEEESCGGGCSCHHHHHHHHHHHE---------EEEEEEEEEEEEESSCCCHHHHHCHHHHHTTCTTC
T ss_pred             c-CCCCCCCEEEEEEccchhcCCCHHHHHHHHHHHc---------CCCCEEEEEEeccccccCHhHhhhHHHhhcccccC
Confidence            0 0234679999999999999889999999999999         67999998764432                     


Q ss_pred             CChhHHHHHHHHcCCEEEEE
Q 009871          464 VDEPSMLSAATQCGFRLVDK  483 (523)
Q Consensus       464 ~~~~~~~~~~~~~gf~~~~~  483 (523)
                      .....+.+.++++||+..++
T Consensus       229 ~~~~~~~~ll~~aGF~~v~~  248 (383)
T 4fsd_A          229 LYLEDFRRLVAEAGFRDVRL  248 (383)
T ss_dssp             CBHHHHHHHHHHTTCCCEEE
T ss_pred             CCHHHHHHHHHHCCCceEEE
Confidence            23367888899999986654

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=99.37  E-value=4.9e-12  Score=115.96  Aligned_cols=128  Identities=21%  Similarity=0.201  Sum_probs=97.2

Q ss_pred             CCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCC
Q 009871          334 VAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG  413 (523)
Q Consensus       334 ~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~  413 (523)
                      .++.+|||+|||+|.++..++..+ .+|+++|+++.+++.+++++..++..    ++.+...|+.+.       ++ +++
T Consensus        31 ~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~----~~~~~~~d~~~~-------~~-~~~   97 (199)
T 2xvm_A           31 VKPGKTLDLGCGNGRNSLYLAANG-YDVDAWDKNAMSIANVERIKSIENLD----NLHTRVVDLNNL-------TF-DRQ   97 (199)
T ss_dssp             SCSCEEEEETCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHHTCT----TEEEEECCGGGC-------CC-CCC
T ss_pred             cCCCeEEEEcCCCCHHHHHHHHCC-CeEEEEECCHHHHHHHHHHHHhCCCC----CcEEEEcchhhC-------CC-CCC
Confidence            467799999999998888888874 58999999999999999999887652    466666655432       12 468


Q ss_pred             ccEEEEccccCCCC--ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec------------CCChhHHHHHHHHcCCE
Q 009871          414 FEVILGTDVSYIPE--AILPLFATAKELTASSNKSLREDQQPAFILCHIFR------------QVDEPSMLSAATQCGFR  479 (523)
Q Consensus       414 fD~Ii~~d~~y~~~--~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r------------~~~~~~~~~~~~~~gf~  479 (523)
                      ||+|+++.++++..  ....+++.+.++|         +|||.+++.....            ..+.+++.+.+.+  |+
T Consensus        98 ~D~v~~~~~l~~~~~~~~~~~l~~~~~~L---------~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--f~  166 (199)
T 2xvm_A           98 YDFILSTVVLMFLEAKTIPGLIANMQRCT---------KPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYEG--WE  166 (199)
T ss_dssp             EEEEEEESCGGGSCGGGHHHHHHHHHHTE---------EEEEEEEEEEEBCCSSSCCCSCCSCCBCTTHHHHHTTT--SE
T ss_pred             ceEEEEcchhhhCCHHHHHHHHHHHHHhc---------CCCeEEEEEEeeccCCcCCCCCCCCccCHHHHHHHhcC--Ce
Confidence            99999999988765  7899999999999         6799977654321            1234455555544  88


Q ss_pred             EEEEcC
Q 009871          480 LVDKWP  485 (523)
Q Consensus       480 ~~~~~~  485 (523)
                      +.+...
T Consensus       167 ~~~~~~  172 (199)
T 2xvm_A          167 RVKYNE  172 (199)
T ss_dssp             EEEEEC
T ss_pred             EEEecc
Confidence            877654

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=99.37  E-value=5.4e-12  Score=121.16  Aligned_cols=116  Identities=18%  Similarity=0.145  Sum_probs=90.2

Q ss_pred             HHHHHhc-CCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCC
Q 009871          323 MAAVLAR-NPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRD  401 (523)
Q Consensus       323 la~~l~~-~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~  401 (523)
                      +.+.+.. .....++.+|||+|||+|.++..++..+ .+|+++|+|+.+++.+++++ .+.    ..++.+...|+.+. 
T Consensus        26 ~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~-~~~----~~~~~~~~~d~~~~-   98 (263)
T 2yqz_A           26 IATAMASAVHPKGEEPVFLELGVGTGRIALPLIARG-YRYIALDADAAMLEVFRQKI-AGV----DRKVQVVQADARAI-   98 (263)
T ss_dssp             HHHHHHHHCCCSSSCCEEEEETCTTSTTHHHHHTTT-CEEEEEESCHHHHHHHHHHT-TTS----CTTEEEEESCTTSC-
T ss_pred             HHHHHHHhhcCCCCCCEEEEeCCcCCHHHHHHHHCC-CEEEEEECCHHHHHHHHHHh-hcc----CCceEEEEcccccC-
Confidence            4444432 2334578899999999998888888774 58999999999999999887 222    24577777666442 


Q ss_pred             cchhhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEe
Q 009871          402 HIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHI  460 (523)
Q Consensus       402 ~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~  460 (523)
                            ++++++||+|+++.++++..+...+++.+.++|         +|||.+++...
T Consensus        99 ------~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L---------~pgG~l~~~~~  142 (263)
T 2yqz_A           99 ------PLPDESVHGVIVVHLWHLVPDWPKVLAEAIRVL---------KPGGALLEGWD  142 (263)
T ss_dssp             ------CSCTTCEEEEEEESCGGGCTTHHHHHHHHHHHE---------EEEEEEEEEEE
T ss_pred             ------CCCCCCeeEEEECCchhhcCCHHHHHHHHHHHC---------CCCcEEEEEec
Confidence                  234568999999999999888999999999999         67999988743

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=99.37  E-value=3.9e-12  Score=121.94  Aligned_cols=75  Identities=15%  Similarity=0.140  Sum_probs=64.8

Q ss_pred             hhhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCcee
Q 009871           69 RYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSID  148 (523)
Q Consensus        69 ~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD  148 (523)
                      +.+...++.+|||||||+|..+..+++.+|+.+|+|+|+|+.|++.|+++.    .++++.++|+.++    + ++++||
T Consensus        27 ~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~----~~~~~~~~d~~~~----~-~~~~fD   97 (259)
T 2p35_A           27 AQVPLERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRL----PNTNFGKADLATW----K-PAQKAD   97 (259)
T ss_dssp             TTCCCSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHS----TTSEEEECCTTTC----C-CSSCEE
T ss_pred             HhcCCCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC----CCcEEEECChhhc----C-ccCCcC
Confidence            334446778999999999999999999977788999999999999999873    5689999999876    4 578999


Q ss_pred             EEEE
Q 009871          149 IVTM  152 (523)
Q Consensus       149 ~V~~  152 (523)
                      +|++
T Consensus        98 ~v~~  101 (259)
T 2p35_A           98 LLYA  101 (259)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9999

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=99.36  E-value=2.5e-12  Score=126.67  Aligned_cols=132  Identities=13%  Similarity=0.114  Sum_probs=103.7

Q ss_pred             CCCCeEEEECCCccHHHHHHH-h-cCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcC
Q 009871          334 VAGKKVLELGCGCGGICSMVA-A-GSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENN  411 (523)
Q Consensus       334 ~~~~~VLElG~G~G~l~~~~a-~-~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~  411 (523)
                      .++.+|||||||+|..+..++ + ....+|+++|+++.+++.+++|+..++..   .++.+...|+.+.       ++. 
T Consensus       117 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~---~~v~~~~~d~~~~-------~~~-  185 (305)
T 3ocj_A          117 RPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALA---GQITLHRQDAWKL-------DTR-  185 (305)
T ss_dssp             CTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTG---GGEEEEECCGGGC-------CCC-
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCC---CceEEEECchhcC-------Ccc-
Confidence            477899999999997777774 2 34569999999999999999999887664   4677777666543       122 


Q ss_pred             CCccEEEEccccCCCCChHH---HHHHHHHHhhccCCCCCCCCCcEEEEEEeecC-------------------------
Q 009871          412 EGFEVILGTDVSYIPEAILP---LFATAKELTASSNKSLREDQQPAFILCHIFRQ-------------------------  463 (523)
Q Consensus       412 ~~fD~Ii~~d~~y~~~~~~~---l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~-------------------------  463 (523)
                      ++||+|+++.++++......   +++.+.++|         +|||.++++...+.                         
T Consensus       186 ~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L---------kpgG~l~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~  256 (305)
T 3ocj_A          186 EGYDLLTSNGLNIYEPDDARVTELYRRFWQAL---------KPGGALVTSFLTPPPALSPDSPWDMQAIDPHDLQLQQLV  256 (305)
T ss_dssp             SCEEEEECCSSGGGCCCHHHHHHHHHHHHHHE---------EEEEEEEEECCCCCTTTCTTCCCCGGGSCHHHHHHHHHH
T ss_pred             CCeEEEEECChhhhcCCHHHHHHHHHHHHHhc---------CCCeEEEEEecCCCCcccccccceeeccccchhhhhhhH
Confidence            68999999998887665554   799999999         67999998773321                         


Q ss_pred             ------------CChhHHHHHHHHcCCEEEEEcC
Q 009871          464 ------------VDEPSMLSAATQCGFRLVDKWP  485 (523)
Q Consensus       464 ------------~~~~~~~~~~~~~gf~~~~~~~  485 (523)
                                  .+..++.+.++++||++.++..
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~  290 (305)
T 3ocj_A          257 FTRLIQPRWNALRTHAQTRAQLEEAGFTDLRFED  290 (305)
T ss_dssp             HHHTTCCSCCCCCCHHHHHHHHHHTTCEEEEEEC
T ss_pred             HHHHHhhhhhccCCHHHHHHHHHHCCCEEEEEEc
Confidence                        2456778889999999988875

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=99.36  E-value=1.1e-11  Score=115.39  Aligned_cols=132  Identities=14%  Similarity=0.066  Sum_probs=98.3

Q ss_pred             CCCeEEEECCCccHHHHHHHhcC-CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCC
Q 009871          335 AGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG  413 (523)
Q Consensus       335 ~~~~VLElG~G~G~l~~~~a~~~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~  413 (523)
                      ++.+|||||||+|.++..++... ..+|+++|+++.+++.|++|+..+++    .++.+...|+.+.   ..  .+++++
T Consensus        41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~----~~v~~~~~d~~~~---~~--~~~~~~  111 (214)
T 1yzh_A           41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGV----PNIKLLWVDGSDL---TD--YFEDGE  111 (214)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC----SSEEEEECCSSCG---GG--TSCTTC
T ss_pred             CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCC----CCEEEEeCCHHHH---Hh--hcCCCC
Confidence            56799999999999888888875 45899999999999999999998876    3577776666532   10  134568


Q ss_pred             ccEEEEccccCCCC--------ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhHHHHHHHHcCCEEEEEcC
Q 009871          414 FEVILGTDVSYIPE--------AILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLVDKWP  485 (523)
Q Consensus       414 fD~Ii~~d~~y~~~--------~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~~~~~~~~gf~~~~~~~  485 (523)
                      ||+|+++...-+..        ....+++.+.++|         +|||.+++...... ....+.+.+.+.||++..+..
T Consensus       112 ~D~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L---------kpgG~l~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~  181 (214)
T 1yzh_A          112 IDRLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRIL---------PENGEIHFKTDNRG-LFEYSLVSFSQYGMKLNGVWL  181 (214)
T ss_dssp             CSEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHS---------CTTCEEEEEESCHH-HHHHHHHHHHHHTCEEEEEES
T ss_pred             CCEEEEECCCCccccchhhhccCCHHHHHHHHHHc---------CCCcEEEEEeCCHH-HHHHHHHHHHHCCCeeeeccc
Confidence            99999884332211        3467999999999         77999988764321 123566778889999988754

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.36  E-value=2.2e-12  Score=120.54  Aligned_cols=110  Identities=20%  Similarity=0.245  Sum_probs=79.2

Q ss_pred             CCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEEE---
Q 009871           76 RKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM---  152 (523)
Q Consensus        76 ~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~---  152 (523)
                      +.+|||||||+|..+..+++.      +|+|+|+.|++.|+++      ++++.++|+..+    ++++++||+|++   
T Consensus        48 ~~~vLDiG~G~G~~~~~l~~~------~~vD~s~~~~~~a~~~------~~~~~~~d~~~~----~~~~~~fD~v~~~~~  111 (219)
T 1vlm_A           48 EGRGVEIGVGTGRFAVPLKIK------IGVEPSERMAEIARKR------GVFVLKGTAENL----PLKDESFDFALMVTT  111 (219)
T ss_dssp             SSCEEEETCTTSTTHHHHTCC------EEEESCHHHHHHHHHT------TCEEEECBTTBC----CSCTTCEEEEEEESC
T ss_pred             CCcEEEeCCCCCHHHHHHHHH------hccCCCHHHHHHHHhc------CCEEEEcccccC----CCCCCCeeEEEEcch
Confidence            789999999999999888654      9999999999999986      478999999876    567789999999   


Q ss_pred             --------------ccccccceeeecceEEec-----------CC----eEEEeeCHHHHHHHHHhCCCcEEEEEeEe
Q 009871          153 --------------ERLTGKDQKISENFYVRG-----------DG----TRAFYFSNDFLTSLFKENGFDVEELGLCC  201 (523)
Q Consensus       153 --------------~~~~~~~~~~~~~~~~~~-----------~g----~~~~~~~~~~l~~ll~~~Gf~~~~~~~~~  201 (523)
                                    .+.+++++.+.-......           .+    ....+++.+++.++|+++||+++++....
T Consensus       112 l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~~~  189 (219)
T 1vlm_A          112 ICFVDDPERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVVQTL  189 (219)
T ss_dssp             GGGSSCHHHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEEEEEC
T ss_pred             HhhccCHHHHHHHHHHHcCCCcEEEEEEeCCccHHHHHHHHHhcCcchhcccccCCHHHHHHHHHHCCCeEEEEeccc
Confidence                          122233332221000000           00    01123589999999999999988776543

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.36  E-value=2.4e-12  Score=120.69  Aligned_cols=72  Identities=24%  Similarity=0.234  Sum_probs=63.3

Q ss_pred             CCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871           75 GRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM  152 (523)
Q Consensus        75 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~  152 (523)
                      ++.+|||+|||+|..+..+++.++  +|+|+|+|+.|++.|+++......+++++++|+.++    ++++++||+|++
T Consensus        38 ~~~~vLDlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~----~~~~~~~D~v~~  109 (227)
T 1ve3_A           38 KRGKVLDLACGVGGFSFLLEDYGF--EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKL----SFEDKTFDYVIF  109 (227)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSC----CSCTTCEEEEEE
T ss_pred             CCCeEEEEeccCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcCCCceEEECchhcC----CCCCCcEEEEEE
Confidence            478999999999999999998865  799999999999999998654457899999999876    566789999998

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=99.35  E-value=6.5e-12  Score=117.28  Aligned_cols=153  Identities=15%  Similarity=0.170  Sum_probs=107.6

Q ss_pred             cccccchhHH-HHHHHHhc---CCCCCCCCeEEEECCCccHHHHHHHhc-CC-CEEEEEcCChHHHHHHHHHHHhcCCCC
Q 009871          312 TGLMLWESAH-LMAAVLAR---NPTIVAGKKVLELGCGCGGICSMVAAG-SA-DLVVATDGDSIALDLLAQNVTANLKPP  385 (523)
Q Consensus       312 ~G~~~W~~a~-~la~~l~~---~~~~~~~~~VLElG~G~G~l~~~~a~~-~~-~~V~~~D~~~~~l~~~~~n~~~n~~~~  385 (523)
                      ...+.|+--. .||..+..   +..+.+|.+|||||||+|..+..+|.. |+ .+|+++|+++.|++.+++++...    
T Consensus        50 ~e~r~w~p~rsklaa~i~~gl~~l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~----  125 (233)
T 4df3_A           50 EEYREWNAYRSKLAAALLKGLIELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDR----  125 (233)
T ss_dssp             EEEEECCTTTCHHHHHHHTTCSCCCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTC----
T ss_pred             ceeeeECCCchHHHHHHHhchhhcCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhh----
Confidence            3577886544 35555543   445679999999999999888888876 44 49999999999999998876542    


Q ss_pred             CCCceEEEeeecCCCCcchhhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCC
Q 009871          386 FLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVD  465 (523)
Q Consensus       386 ~~~~v~~~~ldw~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~  465 (523)
                        .++.....+-.+.+..    .....++|+|++ |+ .++.....++..+.++|         +|||.++++...|..+
T Consensus       126 --~ni~~V~~d~~~p~~~----~~~~~~vDvVf~-d~-~~~~~~~~~l~~~~r~L---------KpGG~lvI~ik~r~~d  188 (233)
T 4df3_A          126 --RNIFPILGDARFPEKY----RHLVEGVDGLYA-DV-AQPEQAAIVVRNARFFL---------RDGGYMLMAIKARSID  188 (233)
T ss_dssp             --TTEEEEESCTTCGGGG----TTTCCCEEEEEE-CC-CCTTHHHHHHHHHHHHE---------EEEEEEEEEEECCHHH
T ss_pred             --cCeeEEEEeccCcccc----ccccceEEEEEE-ec-cCChhHHHHHHHHHHhc---------cCCCEEEEEEecccCC
Confidence              3444444444433211    233568999986 43 45566778999999999         6799999987665422


Q ss_pred             h--------hHHHHHHHHcCCEEEEEcC
Q 009871          466 E--------PSMLSAATQCGFRLVDKWP  485 (523)
Q Consensus       466 ~--------~~~~~~~~~~gf~~~~~~~  485 (523)
                      .        ....+.+++.||++.+...
T Consensus       189 ~~~p~~~~~~~ev~~L~~~GF~l~e~i~  216 (233)
T 4df3_A          189 VTTEPSEVYKREIKTLMDGGLEIKDVVH  216 (233)
T ss_dssp             HHTCCCHHHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCCChHHHHHHHHHHHHHCCCEEEEEEc
Confidence            1        2235567789999987654

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=99.35  E-value=1.3e-12  Score=127.82  Aligned_cols=120  Identities=17%  Similarity=0.230  Sum_probs=87.0

Q ss_pred             CCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCC-------------------------------
Q 009871           75 GRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE-------------------------------  123 (523)
Q Consensus        75 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~-------------------------------  123 (523)
                      ++.+|||||||+|..+..+++.+++.+|+|||+|+.|++.|+++.....                               
T Consensus        46 ~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (292)
T 3g07_A           46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSC  125 (292)
T ss_dssp             TTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC-----------------------------------
T ss_pred             CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccccc
Confidence            5789999999999999999999888899999999999999998753211                               


Q ss_pred             ----------------------------CcEEEEEeeccCCcc-CCCCCCCceeEEEEccc----------------ccc
Q 009871          124 ----------------------------TRVSTFVCDLISDDL-SRQISPSSIDIVTMERL----------------TGK  158 (523)
Q Consensus       124 ----------------------------~~v~~~~~d~~~~~~-~~~~~~~~fD~V~~~~~----------------~~~  158 (523)
                                                  .+++|.++|+..... ..++.+++||+|+|...                ++.
T Consensus       126 ~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~~  205 (292)
T 3g07_A          126 FPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFRR  205 (292)
T ss_dssp             ----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHHH
T ss_pred             ccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHHH
Confidence                                        479999999975420 00245789999999111                111


Q ss_pred             ceeeecceEEecCCeEEE-------------------------eeCHHHHHHHHHh--CCCcEEEEEe
Q 009871          159 DQKISENFYVRGDGTRAF-------------------------YFSNDFLTSLFKE--NGFDVEELGL  199 (523)
Q Consensus       159 ~~~~~~~~~~~~~g~~~~-------------------------~~~~~~l~~ll~~--~Gf~~~~~~~  199 (523)
                      ..+     .++++|.++.                         .+.++++..+|.+  +||..+++..
T Consensus       206 ~~~-----~LkpGG~lil~~~~~~~y~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~~~~GF~~~~~~~  268 (292)
T 3g07_A          206 IYR-----HLRPGGILVLEPQPWSSYGKRKTLTETIYKNYYRIQLKPEQFSSYLTSPDVGFSSYELVA  268 (292)
T ss_dssp             HHH-----HEEEEEEEEEECCCHHHHHTTTTSCHHHHHHHHHCCCCGGGHHHHHTSTTTCCCEEEEC-
T ss_pred             HHH-----HhCCCcEEEEecCCchhhhhhhcccHHHHhhhhcEEEcHHHHHHHHHhcCCCceEEEEec
Confidence            111     4566666654                         1346778889988  9998876644

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=99.35  E-value=6.2e-12  Score=115.77  Aligned_cols=126  Identities=17%  Similarity=0.096  Sum_probs=93.8

Q ss_pred             CCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCc
Q 009871          335 AGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGF  414 (523)
Q Consensus       335 ~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~f  414 (523)
                      ++ +|||+|||+|.++..++..+ .+|+++|+++.+++.+++++..++.     ++.+...|..+.       ++++++|
T Consensus        30 ~~-~vLdiGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~-----~~~~~~~d~~~~-------~~~~~~f   95 (202)
T 2kw5_A           30 QG-KILCLAEGEGRNACFLASLG-YEVTAVDQSSVGLAKAKQLAQEKGV-----KITTVQSNLADF-------DIVADAW   95 (202)
T ss_dssp             SS-EEEECCCSCTHHHHHHHTTT-CEEEEECSSHHHHHHHHHHHHHHTC-----CEEEECCBTTTB-------SCCTTTC
T ss_pred             CC-CEEEECCCCCHhHHHHHhCC-CeEEEEECCHHHHHHHHHHHHhcCC-----ceEEEEcChhhc-------CCCcCCc
Confidence            55 99999999998888888775 4899999999999999999887643     355655555432       2335689


Q ss_pred             cEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec---------------CCChhHHHHHHHHcCCE
Q 009871          415 EVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFR---------------QVDEPSMLSAATQCGFR  479 (523)
Q Consensus       415 D~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r---------------~~~~~~~~~~~~~~gf~  479 (523)
                      |+|+++.+.+.......+++.+.++|         +|||.+++.....               ..+..++.+.++  ||+
T Consensus        96 D~v~~~~~~~~~~~~~~~l~~~~~~L---------~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~--Gf~  164 (202)
T 2kw5_A           96 EGIVSIFCHLPSSLRQQLYPKVYQGL---------KPGGVFILEGFAPEQLQYNTGGPKDLDLLPKLETLQSELP--SLN  164 (202)
T ss_dssp             SEEEEECCCCCHHHHHHHHHHHHTTC---------CSSEEEEEEEECTTTGGGTSCCSSSGGGCCCHHHHHHHCS--SSC
T ss_pred             cEEEEEhhcCCHHHHHHHHHHHHHhc---------CCCcEEEEEEeccccccCCCCCCCcceeecCHHHHHHHhc--Cce
Confidence            99999755444456788899999999         7799999886432               223445566665  999


Q ss_pred             EEEEcC
Q 009871          480 LVDKWP  485 (523)
Q Consensus       480 ~~~~~~  485 (523)
                      +..+..
T Consensus       165 v~~~~~  170 (202)
T 2kw5_A          165 WLIANN  170 (202)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            987644

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=99.35  E-value=5.3e-12  Score=121.40  Aligned_cols=108  Identities=10%  Similarity=0.051  Sum_probs=81.5

Q ss_pred             HHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCC
Q 009871          322 LMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRD  401 (523)
Q Consensus       322 ~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~  401 (523)
                      .+.+.+....  .++.+|||||||+|.++..++..+ .+|+++|+|+.+++.+++++.         ++.+...|..+. 
T Consensus        39 ~~~~~l~~~~--~~~~~vLDiGcG~G~~~~~l~~~~-~~v~gvD~s~~~~~~a~~~~~---------~~~~~~~d~~~~-  105 (263)
T 3pfg_A           39 DLAALVRRHS--PKAASLLDVACGTGMHLRHLADSF-GTVEGLELSADMLAIARRRNP---------DAVLHHGDMRDF-  105 (263)
T ss_dssp             HHHHHHHHHC--TTCCEEEEETCTTSHHHHHHTTTS-SEEEEEESCHHHHHHHHHHCT---------TSEEEECCTTTC-
T ss_pred             HHHHHHHhhC--CCCCcEEEeCCcCCHHHHHHHHcC-CeEEEEECCHHHHHHHHhhCC---------CCEEEECChHHC-
Confidence            3445554432  256899999999998888888775 489999999999999988743         355666555442 


Q ss_pred             cchhhhhhcCCCccEEEEcc-ccCCC---CChHHHHHHHHHHhhccCCCCCCCCCcEEEEE
Q 009871          402 HIEAIKEENNEGFEVILGTD-VSYIP---EAILPLFATAKELTASSNKSLREDQQPAFILC  458 (523)
Q Consensus       402 ~~~~~~~~~~~~fD~Ii~~d-~~y~~---~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~  458 (523)
                            ++ +++||+|+++. ++.+.   +....+++.+.++|         +|||.+++.
T Consensus       106 ------~~-~~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L---------~pgG~l~i~  150 (263)
T 3pfg_A          106 ------SL-GRRFSAVTCMFSSIGHLAGQAELDAALERFAAHV---------LPDGVVVVE  150 (263)
T ss_dssp             ------CC-SCCEEEEEECTTGGGGSCHHHHHHHHHHHHHHTE---------EEEEEEEEC
T ss_pred             ------Cc-cCCcCEEEEcCchhhhcCCHHHHHHHHHHHHHhc---------CCCcEEEEE
Confidence                  11 46899999996 88775   46778899999999         668888874

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.35  E-value=6.5e-12  Score=114.51  Aligned_cols=125  Identities=19%  Similarity=0.250  Sum_probs=98.2

Q ss_pred             CCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCc
Q 009871          335 AGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGF  414 (523)
Q Consensus       335 ~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~f  414 (523)
                      ++.+|||+|||+|.++..++..+ .+|+++|+++.+++.+++++.         ++.+...|..+.       +++.++|
T Consensus        46 ~~~~vLdiG~G~G~~~~~l~~~~-~~v~~~D~~~~~~~~a~~~~~---------~~~~~~~d~~~~-------~~~~~~~  108 (195)
T 3cgg_A           46 RGAKILDAGCGQGRIGGYLSKQG-HDVLGTDLDPILIDYAKQDFP---------EARWVVGDLSVD-------QISETDF  108 (195)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHTT-CEEEEEESCHHHHHHHHHHCT---------TSEEEECCTTTS-------CCCCCCE
T ss_pred             CCCeEEEECCCCCHHHHHHHHCC-CcEEEEcCCHHHHHHHHHhCC---------CCcEEEcccccC-------CCCCCce
Confidence            67899999999998888888774 589999999999999988752         245555555432       1235689


Q ss_pred             cEEEEc-cccCCC--CChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecC-CChhHHHHHHHHcCCEEEEEcC
Q 009871          415 EVILGT-DVSYIP--EAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ-VDEPSMLSAATQCGFRLVDKWP  485 (523)
Q Consensus       415 D~Ii~~-d~~y~~--~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~-~~~~~~~~~~~~~gf~~~~~~~  485 (523)
                      |+|+++ +++++.  +....+++.+.++|         +|+|.+++...... .+...+.+.+++.||++.+...
T Consensus       109 D~i~~~~~~~~~~~~~~~~~~l~~~~~~l---------~~~G~l~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~  174 (195)
T 3cgg_A          109 DLIVSAGNVMGFLAEDGREPALANIHRAL---------GADGRAVIGFGAGRGWVFGDFLEVAERVGLELENAFE  174 (195)
T ss_dssp             EEEEECCCCGGGSCHHHHHHHHHHHHHHE---------EEEEEEEEEEETTSSCCHHHHHHHHHHHTEEEEEEES
T ss_pred             eEEEECCcHHhhcChHHHHHHHHHHHHHh---------CCCCEEEEEeCCCCCcCHHHHHHHHHHcCCEEeeeec
Confidence            999998 676654  45688999999999         67999988776543 4567888999999999998865

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=99.35  E-value=8.8e-12  Score=116.01  Aligned_cols=125  Identities=10%  Similarity=0.065  Sum_probs=97.0

Q ss_pred             CCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCC
Q 009871          333 IVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNE  412 (523)
Q Consensus       333 ~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~  412 (523)
                      ..++.+|||||||+|.++..++..+ .+|+++|+++.+++.+++    ++.    .++.+...|..+.        ...+
T Consensus        44 ~~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~~D~s~~~~~~a~~----~~~----~~~~~~~~d~~~~--------~~~~  106 (218)
T 3ou2_A           44 GNIRGDVLELASGTGYWTRHLSGLA-DRVTALDGSAEMIAEAGR----HGL----DNVEFRQQDLFDW--------TPDR  106 (218)
T ss_dssp             TTSCSEEEEESCTTSHHHHHHHHHS-SEEEEEESCHHHHHHHGG----GCC----TTEEEEECCTTSC--------CCSS
T ss_pred             CCCCCeEEEECCCCCHHHHHHHhcC-CeEEEEeCCHHHHHHHHh----cCC----CCeEEEecccccC--------CCCC
Confidence            3467799999999998888888884 589999999999999987    222    3567766665432        2357


Q ss_pred             CccEEEEccccCCCCC--hHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec----------------------------
Q 009871          413 GFEVILGTDVSYIPEA--ILPLFATAKELTASSNKSLREDQQPAFILCHIFR----------------------------  462 (523)
Q Consensus       413 ~fD~Ii~~d~~y~~~~--~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r----------------------------  462 (523)
                      +||+|+++.++++...  ...+++.+.++|         +|||.+++....+                            
T Consensus       107 ~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L---------~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (218)
T 3ou2_A          107 QWDAVFFAHWLAHVPDDRFEAFWESVRSAV---------APGGVVEFVDVTDHERRLEQQDDSEPEVAVRRTLQDGRSFR  177 (218)
T ss_dssp             CEEEEEEESCGGGSCHHHHHHHHHHHHHHE---------EEEEEEEEEEECCCC------------CEEEEECTTSCEEE
T ss_pred             ceeEEEEechhhcCCHHHHHHHHHHHHHHc---------CCCeEEEEEeCCCCccccchhhhcccccceeeecCCcchhh
Confidence            9999999999988766  489999999999         6799998875432                            


Q ss_pred             ----CCChhHHHHHHHHcCCEEEEE
Q 009871          463 ----QVDEPSMLSAATQCGFRLVDK  483 (523)
Q Consensus       463 ----~~~~~~~~~~~~~~gf~~~~~  483 (523)
                          ..+..++.+.++++||++...
T Consensus       178 ~~~~~~~~~~~~~~l~~aGf~v~~~  202 (218)
T 3ou2_A          178 IVKVFRSPAELTERLTALGWSCSVD  202 (218)
T ss_dssp             EECCCCCHHHHHHHHHHTTEEEEEE
T ss_pred             HhhcCCCHHHHHHHHHHCCCEEEee
Confidence                124457888899999996554

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=99.35  E-value=6.2e-12  Score=116.18  Aligned_cols=126  Identities=10%  Similarity=0.030  Sum_probs=90.5

Q ss_pred             hhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCC-C-cEEEEEeeccCCccCCCCCCCce
Q 009871           70 YFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE-T-RVSTFVCDLISDDLSRQISPSSI  147 (523)
Q Consensus        70 ~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~-~-~v~~~~~d~~~~~~~~~~~~~~f  147 (523)
                      .+...++.+|||+|||+|.++..+++.  +.+|+|+|+|+.|++.|+++....+ . +++++++|+.+.    .....+|
T Consensus        50 ~l~~~~~~~vLDlGcG~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~----~~~~~~~  123 (204)
T 3njr_A           50 ALAPRRGELLWDIGGGSGSVSVEWCLA--GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAA----LADLPLP  123 (204)
T ss_dssp             HHCCCTTCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGG----GTTSCCC
T ss_pred             hcCCCCCCEEEEecCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhh----cccCCCC
Confidence            344567889999999999999999988  7789999999999999999864332 3 799999999862    1123579


Q ss_pred             eEEEEccccccceeeec-ceEEecCCeEEEee----CHHHHHHHHHhCCCcEEEEEeEee
Q 009871          148 DIVTMERLTGKDQKISE-NFYVRGDGTRAFYF----SNDFLTSLFKENGFDVEELGLCCK  202 (523)
Q Consensus       148 D~V~~~~~~~~~~~~~~-~~~~~~~g~~~~~~----~~~~l~~ll~~~Gf~~~~~~~~~~  202 (523)
                      |+|++..-.... .+.. ...++++|.+++..    +..++.+.+++.|+++..+.....
T Consensus       124 D~v~~~~~~~~~-~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~g~~i~~i~~~~~  182 (204)
T 3njr_A          124 EAVFIGGGGSQA-LYDRLWEWLAPGTRIVANAVTLESETLLTQLHARHGGQLLRIDIAQA  182 (204)
T ss_dssp             SEEEECSCCCHH-HHHHHHHHSCTTCEEEEEECSHHHHHHHHHHHHHHCSEEEEEEEEEE
T ss_pred             CEEEECCcccHH-HHHHHHHhcCCCcEEEEEecCcccHHHHHHHHHhCCCcEEEEEeecc
Confidence            999982111111 1111 11578888887643    345678888999998877765443

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=99.34  E-value=1.9e-12  Score=123.40  Aligned_cols=121  Identities=14%  Similarity=0.097  Sum_probs=88.9

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCC-CcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQISPSSIDIVTM  152 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~V~~  152 (523)
                      .++.+|||||||+|..+..++..+|+.+|+|+|+|+.|++.|+++....+ .+++++++|+.+.... +..+++||+|++
T Consensus        79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~-~~~~~~fD~I~s  157 (249)
T 3g89_A           79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLARE-AGHREAYARAVA  157 (249)
T ss_dssp             CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTS-TTTTTCEEEEEE
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcc-cccCCCceEEEE
Confidence            46789999999999999999999889999999999999999999875432 4699999999865211 122478999999


Q ss_pred             ccc------cccceeeecceEEecCCeEEEee---CHHH---HHHHHHhCCCcEEEEEeE
Q 009871          153 ERL------TGKDQKISENFYVRGDGTRAFYF---SNDF---LTSLFKENGFDVEELGLC  200 (523)
Q Consensus       153 ~~~------~~~~~~~~~~~~~~~~g~~~~~~---~~~~---l~~ll~~~Gf~~~~~~~~  200 (523)
                      ..+      .....+     +++++|.++++.   ..++   +...++..||.+.++...
T Consensus       158 ~a~~~~~~ll~~~~~-----~LkpgG~l~~~~g~~~~~e~~~~~~~l~~~G~~~~~~~~~  212 (249)
T 3g89_A          158 RAVAPLCVLSELLLP-----FLEVGGAAVAMKGPRVEEELAPLPPALERLGGRLGEVLAL  212 (249)
T ss_dssp             ESSCCHHHHHHHHGG-----GEEEEEEEEEEECSCCHHHHTTHHHHHHHHTEEEEEEEEE
T ss_pred             CCcCCHHHHHHHHHH-----HcCCCeEEEEEeCCCcHHHHHHHHHHHHHcCCeEEEEEEe
Confidence            222      111112     567778776643   2344   566777889998776543

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=99.34  E-value=8.3e-12  Score=118.43  Aligned_cols=138  Identities=15%  Similarity=0.118  Sum_probs=103.5

Q ss_pred             HHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCc
Q 009871          323 MAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDH  402 (523)
Q Consensus       323 la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~  402 (523)
                      +.+++....  .++.+|||+|||+|.++..++..+ .+|+++|+++.+++.+++++..++.     ++.+...|..+.  
T Consensus        27 ~~~~l~~~~--~~~~~vLdiG~G~G~~~~~l~~~~-~~~~~~D~s~~~~~~a~~~~~~~~~-----~~~~~~~d~~~~--   96 (246)
T 1y8c_A           27 IIEKCVENN--LVFDDYLDLACGTGNLTENLCPKF-KNTWAVDLSQEMLSEAENKFRSQGL-----KPRLACQDISNL--   96 (246)
T ss_dssp             HHHHHHTTT--CCTTEEEEETCTTSTTHHHHGGGS-SEEEEECSCHHHHHHHHHHHHHTTC-----CCEEECCCGGGC--
T ss_pred             HHHHHHHhC--CCCCeEEEeCCCCCHHHHHHHHCC-CcEEEEECCHHHHHHHHHHHhhcCC-----CeEEEecccccC--
Confidence            445554331  367899999999998888888775 5799999999999999999887543     345554444322  


Q ss_pred             chhhhhhcCCCccEEEEcc-ccCCC---CChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEe------------------
Q 009871          403 IEAIKEENNEGFEVILGTD-VSYIP---EAILPLFATAKELTASSNKSLREDQQPAFILCHI------------------  460 (523)
Q Consensus       403 ~~~~~~~~~~~fD~Ii~~d-~~y~~---~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~------------------  460 (523)
                           ++ +++||+|+++. ++++.   +....+++.+.++|         +|||.+++...                  
T Consensus        97 -----~~-~~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L---------~pgG~l~~~~~~~~~~~~~~~~~~~~~~~  161 (246)
T 1y8c_A           97 -----NI-NRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHL---------KEGGVFIFDINSYYKLSQVLGNNDFNYDD  161 (246)
T ss_dssp             -----CC-SCCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTE---------EEEEEEEEEEECHHHHHTTTTTCCEEEEE
T ss_pred             -----Cc-cCCceEEEEcCccccccCCHHHHHHHHHHHHHhc---------CCCcEEEEEecCHHHHHhhcCcceEEecC
Confidence                 12 26899999996 88876   67788899999999         66888887322                  


Q ss_pred             --------------------------------------ecCCChhHHHHHHHHcCCEEEEEcC
Q 009871          461 --------------------------------------FRQVDEPSMLSAATQCGFRLVDKWP  485 (523)
Q Consensus       461 --------------------------------------~r~~~~~~~~~~~~~~gf~~~~~~~  485 (523)
                                                            .|..+.+++.+.++++||++.+++.
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aGf~~~~~~~  224 (246)
T 1y8c_A          162 DEVFYYWENQFEDDLVSMYISFFVRDGEFYKRFDEEHEERAYKEEDIEKYLKHGQLNILDKVD  224 (246)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEEEEECSSSEEEEEEEEEEECCCHHHHHHHHHHTTEEEEEEEE
T ss_pred             CcEEEEEecccCCceEEEEEEEEEecCCcccccEEEEEEEcCCHHHHHHHHHHCCCeEEEEEc
Confidence                                                  1223667888999999999998865

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=99.34  E-value=3.8e-12  Score=121.29  Aligned_cols=132  Identities=13%  Similarity=0.017  Sum_probs=97.3

Q ss_pred             CCCCCeEEEECCCccHHHHHHHhc-CCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcC
Q 009871          333 IVAGKKVLELGCGCGGICSMVAAG-SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENN  411 (523)
Q Consensus       333 ~~~~~~VLElG~G~G~l~~~~a~~-~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~  411 (523)
                      ..++.+|||||||+|.++..++.. ...+|+++|+++.+++.+++|+..+++.    ++.+...++.+...    .....
T Consensus        78 ~~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~----~v~~~~~d~~~~~~----~~~~~  149 (249)
T 3g89_A           78 WQGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLK----GARALWGRAEVLAR----EAGHR  149 (249)
T ss_dssp             CCSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCS----SEEEEECCHHHHTT----STTTT
T ss_pred             cCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCC----ceEEEECcHHHhhc----ccccC
Confidence            346789999999999888888876 4569999999999999999999998774    36666555432100    00113


Q ss_pred             CCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCC-hhHHHHHHHHcCCEEEEEcC
Q 009871          412 EGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVD-EPSMLSAATQCGFRLVDKWP  485 (523)
Q Consensus       412 ~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~-~~~~~~~~~~~gf~~~~~~~  485 (523)
                      ++||+|++..+    ..+..+++.+.++|         +|||.+++........ ...+...+++.||++.++..
T Consensus       150 ~~fD~I~s~a~----~~~~~ll~~~~~~L---------kpgG~l~~~~g~~~~~e~~~~~~~l~~~G~~~~~~~~  211 (249)
T 3g89_A          150 EAYARAVARAV----APLCVLSELLLPFL---------EVGGAAVAMKGPRVEEELAPLPPALERLGGRLGEVLA  211 (249)
T ss_dssp             TCEEEEEEESS----CCHHHHHHHHGGGE---------EEEEEEEEEECSCCHHHHTTHHHHHHHHTEEEEEEEE
T ss_pred             CCceEEEECCc----CCHHHHHHHHHHHc---------CCCeEEEEEeCCCcHHHHHHHHHHHHHcCCeEEEEEE
Confidence            68999999743    46788999999999         6799988765432211 23566778889999988754

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=99.34  E-value=2.2e-12  Score=126.18  Aligned_cols=142  Identities=18%  Similarity=0.234  Sum_probs=101.2

Q ss_pred             CCCCCeEEEECCCccHHHHHHHhc-CCCEEEEEcCChHHHHHHHHHHHhcCCCC--------------------------
Q 009871          333 IVAGKKVLELGCGCGGICSMVAAG-SADLVVATDGDSIALDLLAQNVTANLKPP--------------------------  385 (523)
Q Consensus       333 ~~~~~~VLElG~G~G~l~~~~a~~-~~~~V~~~D~~~~~l~~~~~n~~~n~~~~--------------------------  385 (523)
                      .+++++|||||||+|.++..++.. ++.+|+++|+|+.|++.|++|+..+....                          
T Consensus        44 ~~~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (292)
T 3g07_A           44 WFRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKR  123 (292)
T ss_dssp             GTTTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC---------------------------------
T ss_pred             hcCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccc
Confidence            357899999999999988888887 46799999999999999999877654210                          


Q ss_pred             ----------------------------CCCceEEEeeecCCCCcchhhhhhcCCCccEEEEccccCCC------CChHH
Q 009871          386 ----------------------------FLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIP------EAILP  431 (523)
Q Consensus       386 ----------------------------~~~~v~~~~ldw~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~------~~~~~  431 (523)
                                                  ...++.+...|+.....  .+.++..++||+|++..++.+.      +....
T Consensus       124 ~~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~--~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~  201 (292)
T 3g07_A          124 SCFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRD--DLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKR  201 (292)
T ss_dssp             ------------------CCSSTTCCSSTTTTEEEEECCCCCSSH--HHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHH
T ss_pred             ccccchhhhccCccccccccccccccccccccceEEecccccCcc--ccccccCCCcCEEEEChHHHHhhhcCCHHHHHH
Confidence                                        01468888888865421  1122346799999999987443      37888


Q ss_pred             HHHHHHHHhhccCCCCCCCCCcEEEEEEee-------cC-------------CChhHHHHHHHH--cCCEEEEEcC
Q 009871          432 LFATAKELTASSNKSLREDQQPAFILCHIF-------RQ-------------VDEPSMLSAATQ--CGFRLVDKWP  485 (523)
Q Consensus       432 l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~-------r~-------------~~~~~~~~~~~~--~gf~~~~~~~  485 (523)
                      +++.+.++|         +|||.+++....       +.             ...+.|.+.+.+  .||+..++..
T Consensus       202 ~l~~~~~~L---------kpGG~lil~~~~~~~y~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~~~~GF~~~~~~~  268 (292)
T 3g07_A          202 MFRRIYRHL---------RPGGILVLEPQPWSSYGKRKTLTETIYKNYYRIQLKPEQFSSYLTSPDVGFSSYELVA  268 (292)
T ss_dssp             HHHHHHHHE---------EEEEEEEEECCCHHHHHTTTTSCHHHHHHHHHCCCCGGGHHHHHTSTTTCCCEEEEC-
T ss_pred             HHHHHHHHh---------CCCcEEEEecCCchhhhhhhcccHHHHhhhhcEEEcHHHHHHHHHhcCCCceEEEEec
Confidence            999999999         679999986432       11             123456677777  8998877655

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=99.34  E-value=3.4e-11  Score=122.15  Aligned_cols=138  Identities=14%  Similarity=0.067  Sum_probs=97.1

Q ss_pred             CCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCC
Q 009871          334 VAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG  413 (523)
Q Consensus       334 ~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~  413 (523)
                      .++++|||+|||+|.++..+|+.++.+|+++|+|+.+++.|++|++.|++..  .++.+...|..+.  +..+ .....+
T Consensus       211 ~~~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~N~~~n~~~~--~~v~~~~~D~~~~--l~~~-~~~~~~  285 (385)
T 2b78_A          211 AAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDM--ANHQLVVMDVFDY--FKYA-RRHHLT  285 (385)
T ss_dssp             TBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCC--TTEEEEESCHHHH--HHHH-HHTTCC
T ss_pred             cCCCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCc--cceEEEECCHHHH--HHHH-HHhCCC
Confidence            3678999999999999998888787899999999999999999999998751  1566665544321  1111 112458


Q ss_pred             ccEEEEccccCC-----C----CChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhHHHHH----HHHcCCEE
Q 009871          414 FEVILGTDVSYI-----P----EAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSA----ATQCGFRL  480 (523)
Q Consensus       414 fD~Ii~~d~~y~-----~----~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~~~~----~~~~gf~~  480 (523)
                      ||+|++....+.     .    ..+..+++.+.++|         +|+|.++++...+....+.|.+.    +.+.|.++
T Consensus       286 fD~Ii~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L---------~pgG~l~~~~~~~~~~~~~~~~~i~~~~~~~g~~~  356 (385)
T 2b78_A          286 YDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEIL---------SENGLIIASTNAANMTVSQFKKQIEKGFGKQKHTY  356 (385)
T ss_dssp             EEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTE---------EEEEEEEEEECCTTSCHHHHHHHHHHHHTTCCCEE
T ss_pred             ccEEEECCCCCCCChhhHHHHHHHHHHHHHHHHHhc---------CCCcEEEEEeCCCcCCHHHHHHHHHHHHHHcCCcE
Confidence            999998544432     1    12344666667888         67999999988877766655544    45678875


Q ss_pred             EEEcC
Q 009871          481 VDKWP  485 (523)
Q Consensus       481 ~~~~~  485 (523)
                      .....
T Consensus       357 ~~~~~  361 (385)
T 2b78_A          357 LDLQQ  361 (385)
T ss_dssp             EEEEC
T ss_pred             EEeCC
Confidence            55444

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=99.34  E-value=1.4e-12  Score=123.98  Aligned_cols=75  Identities=19%  Similarity=0.246  Sum_probs=60.3

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCC-CceeEEEE
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISP-SSIDIVTM  152 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~-~~fD~V~~  152 (523)
                      .++.+|||||||+|.++..+++.++  +|+|+|+|+.|++.|+++..  ..+++++++|+.++....++.+ ..||+|++
T Consensus        55 ~~~~~vLD~GcG~G~~~~~la~~~~--~v~gvD~s~~~~~~a~~~~~--~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~  130 (245)
T 3ggd_A           55 NPELPLIDFACGNGTQTKFLSQFFP--RVIGLDVSKSALEIAAKENT--AANISYRLLDGLVPEQAAQIHSEIGDANIYM  130 (245)
T ss_dssp             CTTSCEEEETCTTSHHHHHHHHHSS--CEEEEESCHHHHHHHHHHSC--CTTEEEEECCTTCHHHHHHHHHHHCSCEEEE
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHhCC--CEEEEECCHHHHHHHHHhCc--ccCceEEECcccccccccccccccCccEEEE
Confidence            5678999999999999999999976  59999999999999999763  3579999999987532211211 24999999

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=99.34  E-value=5.9e-12  Score=113.29  Aligned_cols=123  Identities=12%  Similarity=0.162  Sum_probs=89.6

Q ss_pred             hhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCC--CcEEEEEeeccCCccCCCCCCCce
Q 009871           70 YFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQISPSSI  147 (523)
Q Consensus        70 ~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~f  147 (523)
                      .+...++.+|||+|||+|.++..+++.+|+.+|+|+|+|+.|++.|+++....+  .++ ++++|+.+ .+  +..+++|
T Consensus        20 ~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~-~~--~~~~~~~   95 (178)
T 3hm2_A           20 ALAPKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPR-AF--DDVPDNP   95 (178)
T ss_dssp             HHCCCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTG-GG--GGCCSCC
T ss_pred             HhcccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHh-hh--hccCCCC
Confidence            344467789999999999999999999888999999999999999998764332  368 88888754 22  2223789


Q ss_pred             eEEEEcc------ccccceeeecceEEecCCeEEEee----CHHHHHHHHHhCCCcEEEEEeEe
Q 009871          148 DIVTMER------LTGKDQKISENFYVRGDGTRAFYF----SNDFLTSLFKENGFDVEELGLCC  201 (523)
Q Consensus       148 D~V~~~~------~~~~~~~~~~~~~~~~~g~~~~~~----~~~~l~~ll~~~Gf~~~~~~~~~  201 (523)
                      |+|++..      ++....+     .++++|.+++..    +...+..++++.|++...+....
T Consensus        96 D~i~~~~~~~~~~~l~~~~~-----~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (178)
T 3hm2_A           96 DVIFIGGGLTAPGVFAAAWK-----RLPVGGRLVANAVTVESEQMLWALRKQFGGTISSFAISH  154 (178)
T ss_dssp             SEEEECC-TTCTTHHHHHHH-----TCCTTCEEEEEECSHHHHHHHHHHHHHHCCEEEEEEEEE
T ss_pred             CEEEECCcccHHHHHHHHHH-----hcCCCCEEEEEeeccccHHHHHHHHHHcCCeeEEEEeec
Confidence            9999921      1122222     578888877632    45567888888998877665543

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=99.34  E-value=3.5e-12  Score=121.03  Aligned_cols=131  Identities=12%  Similarity=0.053  Sum_probs=95.4

Q ss_pred             CCCCeEEEECCCccHHHHHHHhc-CCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCC
Q 009871          334 VAGKKVLELGCGCGGICSMVAAG-SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNE  412 (523)
Q Consensus       334 ~~~~~VLElG~G~G~l~~~~a~~-~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~  412 (523)
                      .++.+|||+|||+|.++..++.. ...+|+++|+|+.|++.+++|+..++..    ++.+...|..+...    .....+
T Consensus        69 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~----~v~~~~~d~~~~~~----~~~~~~  140 (240)
T 1xdz_A           69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLE----NTTFCHDRAETFGQ----RKDVRE  140 (240)
T ss_dssp             GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCS----SEEEEESCHHHHTT----CTTTTT
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC----CEEEEeccHHHhcc----cccccC
Confidence            36789999999999888877754 4568999999999999999999988763    36666554422100    000146


Q ss_pred             CccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCC-hhHHHHHHHHcCCEEEEEcC
Q 009871          413 GFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVD-EPSMLSAATQCGFRLVDKWP  485 (523)
Q Consensus       413 ~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~-~~~~~~~~~~~gf~~~~~~~  485 (523)
                      +||+|++..+    ..+..+++.+.++|         +|||.+++....+... ...+.+.+++.||++.++..
T Consensus       141 ~fD~V~~~~~----~~~~~~l~~~~~~L---------kpgG~l~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~  201 (240)
T 1xdz_A          141 SYDIVTARAV----ARLSVLSELCLPLV---------KKNGLFVALKAASAEEELNAGKKAITTLGGELENIHS  201 (240)
T ss_dssp             CEEEEEEECC----SCHHHHHHHHGGGE---------EEEEEEEEEECC-CHHHHHHHHHHHHHTTEEEEEEEE
T ss_pred             CccEEEEecc----CCHHHHHHHHHHhc---------CCCCEEEEEeCCCchHHHHHHHHHHHHcCCeEeEEEE
Confidence            8999998763    56889999999999         6799998865432211 23466778899999877643

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.34  E-value=1.7e-12  Score=122.87  Aligned_cols=118  Identities=11%  Similarity=0.026  Sum_probs=84.2

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEEEc
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTME  153 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~  153 (523)
                      .++.+|||||||+|.++..+++..+ .+|+|+|+|+.|++.|+++....+.+++++++|+.++  ..++++++||+|++.
T Consensus        59 ~~~~~vLDiGcGtG~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~--~~~~~~~~fD~V~~d  135 (236)
T 1zx0_A           59 SKGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDV--APTLPDGHFDGILYD  135 (236)
T ss_dssp             TTCEEEEEECCTTSHHHHHHHTSCE-EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHH--GGGSCTTCEEEEEEC
T ss_pred             CCCCeEEEEeccCCHHHHHHHhcCC-CeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHh--hcccCCCceEEEEEC
Confidence            5678999999999999999976543 4799999999999999998765557899999999754  124667899999981


Q ss_pred             ccc---ccce-----e-eec-ceEEecCCeEEEee------------------CHHHHHHHHHhCCCcE
Q 009871          154 RLT---GKDQ-----K-ISE-NFYVRGDGTRAFYF------------------SNDFLTSLFKENGFDV  194 (523)
Q Consensus       154 ~~~---~~~~-----~-~~~-~~~~~~~g~~~~~~------------------~~~~l~~ll~~~Gf~~  194 (523)
                      .+.   ....     . +.. ...++++|.+.+.-                  ..+.....+.++||..
T Consensus       136 ~~~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~  204 (236)
T 1zx0_A          136 TYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLTSWGELMKSKYSDITIMFEETQVPALLEAGFRR  204 (236)
T ss_dssp             CCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHHHHHHHTTTTCSCHHHHHHHHTHHHHHHTTCCG
T ss_pred             CcccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEecCcHHHhhchhhhhhhhhccHHHHHHHHHCCCCC
Confidence            110   0000     0 111 12688899887531                  0134556788899985

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=99.33  E-value=5.8e-12  Score=117.89  Aligned_cols=128  Identities=20%  Similarity=0.254  Sum_probs=95.5

Q ss_pred             CCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCc
Q 009871          335 AGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGF  414 (523)
Q Consensus       335 ~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~f  414 (523)
                      ++.+|||+|||+|.++..++..+ .+|+++|+++.+++.++++   .       .+.+...+..+.   .........+|
T Consensus        52 ~~~~vLdiG~G~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~---~-------~~~~~~~~~~~~---~~~~~~~~~~f  117 (227)
T 3e8s_A           52 QPERVLDLGCGEGWLLRALADRG-IEAVGVDGDRTLVDAARAA---G-------AGEVHLASYAQL---AEAKVPVGKDY  117 (227)
T ss_dssp             CCSEEEEETCTTCHHHHHHHTTT-CEEEEEESCHHHHHHHHHT---C-------SSCEEECCHHHH---HTTCSCCCCCE
T ss_pred             CCCEEEEeCCCCCHHHHHHHHCC-CEEEEEcCCHHHHHHHHHh---c-------ccccchhhHHhh---cccccccCCCc
Confidence            45899999999998888888875 4899999999999999876   1       122332222211   00001123469


Q ss_pred             cEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec------------------------------CC
Q 009871          415 EVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFR------------------------------QV  464 (523)
Q Consensus       415 D~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r------------------------------~~  464 (523)
                      |+|+++.+++ ......+++.+.++|         +|||.+++.....                              ..
T Consensus       118 D~v~~~~~l~-~~~~~~~l~~~~~~L---------~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (227)
T 3e8s_A          118 DLICANFALL-HQDIIELLSAMRTLL---------VPGGALVIQTLHPWSVADGDYQDGWREESFAGFAGDWQPMPWYFR  187 (227)
T ss_dssp             EEEEEESCCC-SSCCHHHHHHHHHTE---------EEEEEEEEEECCTTTTCTTCCSCEEEEECCTTSSSCCCCEEEEEC
T ss_pred             cEEEECchhh-hhhHHHHHHHHHHHh---------CCCeEEEEEecCccccCccccccccchhhhhccccCcccceEEEe
Confidence            9999999999 788999999999999         6799999876421                              12


Q ss_pred             ChhHHHHHHHHcCCEEEEEcCC
Q 009871          465 DEPSMLSAATQCGFRLVDKWPS  486 (523)
Q Consensus       465 ~~~~~~~~~~~~gf~~~~~~~~  486 (523)
                      +..++.+.++++||++.++...
T Consensus       188 ~~~~~~~~l~~aGf~~~~~~~~  209 (227)
T 3e8s_A          188 TLASWLNALDMAGLRLVSLQEP  209 (227)
T ss_dssp             CHHHHHHHHHHTTEEEEEEECC
T ss_pred             cHHHHHHHHHHcCCeEEEEecC
Confidence            4577889999999999998764

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=99.33  E-value=3.5e-12  Score=120.18  Aligned_cols=124  Identities=14%  Similarity=0.249  Sum_probs=86.8

Q ss_pred             hcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEE
Q 009871           71 FSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIV  150 (523)
Q Consensus        71 ~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V  150 (523)
                      +...++.+|||+|||+|.++..+++..+..+|+|+|+|+.|++.|++++... .++.++++|+.......+++ ++||+|
T Consensus        70 ~~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~-~~v~~~~~d~~~~~~~~~~~-~~~D~v  147 (230)
T 1fbn_A           70 MPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER-ENIIPILGDANKPQEYANIV-EKVDVI  147 (230)
T ss_dssp             CCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC-TTEEEEECCTTCGGGGTTTS-CCEEEE
T ss_pred             cCCCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcC-CCeEEEECCCCCcccccccC-ccEEEE
Confidence            3345678999999999999999999976678999999999999999886544 78999999998611001444 789999


Q ss_pred             EEccccccc--ee-eec-ceEEecCCeEEEee--------------CHHHHHHHHHhCCCcEEEEE
Q 009871          151 TMERLTGKD--QK-ISE-NFYVRGDGTRAFYF--------------SNDFLTSLFKENGFDVEELG  198 (523)
Q Consensus       151 ~~~~~~~~~--~~-~~~-~~~~~~~g~~~~~~--------------~~~~l~~ll~~~Gf~~~~~~  198 (523)
                      +.. +..+.  .. +.. ...++++|.++..+              ..+++. +|.++||+.++..
T Consensus       148 ~~~-~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~l~-~l~~~Gf~~~~~~  211 (230)
T 1fbn_A          148 YED-VAQPNQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKE-ILEAGGFKIVDEV  211 (230)
T ss_dssp             EEC-CCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHH-HHHHHTEEEEEEE
T ss_pred             EEe-cCChhHHHHHHHHHHHhCCCCcEEEEEEecCCCCCCCCHHHhhHHHHH-HHHHCCCEEEEEE
Confidence            861 10110  00 111 11567777665521              126677 8889999876654

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=99.33  E-value=4.6e-12  Score=127.05  Aligned_cols=115  Identities=17%  Similarity=0.200  Sum_probs=92.8

Q ss_pred             HHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCc
Q 009871          323 MAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDH  402 (523)
Q Consensus       323 la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~  402 (523)
                      ..+.+..+....++++|||||||+|.++..++..++.+|+++|+|+ +++.|++++..|+..   .++.+...++.+.  
T Consensus        54 ~~~~i~~~~~~~~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s~-~l~~a~~~~~~~~~~---~~v~~~~~d~~~~--  127 (349)
T 3q7e_A           54 YRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSS-ISDYAVKIVKANKLD---HVVTIIKGKVEEV--  127 (349)
T ss_dssp             HHHHHHTCHHHHTTCEEEEESCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHTTCT---TTEEEEESCTTTC--
T ss_pred             HHHHHHhccccCCCCEEEEEeccchHHHHHHHHCCCCEEEEECcHH-HHHHHHHHHHHcCCC---CcEEEEECcHHHc--
Confidence            3455555555678899999999999998888888877999999995 999999999999875   5688887777654  


Q ss_pred             chhhhhhcCCCccEEEEcccc---CCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEE
Q 009871          403 IEAIKEENNEGFEVILGTDVS---YIPEAILPLFATAKELTASSNKSLREDQQPAFIL  457 (523)
Q Consensus       403 ~~~~~~~~~~~fD~Ii~~d~~---y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l  457 (523)
                           +++.++||+|++..+.   .+...+..+++.+.++|         +|||.++.
T Consensus       128 -----~~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~L---------kpgG~li~  171 (349)
T 3q7e_A          128 -----ELPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWL---------APDGLIFP  171 (349)
T ss_dssp             -----CCSSSCEEEEEECCCBBTBTBTCCHHHHHHHHHHHE---------EEEEEEES
T ss_pred             -----cCCCCceEEEEEccccccccCchhHHHHHHHHHHhC---------CCCCEEcc
Confidence                 2335799999997653   44678999999999999         67898864

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=99.33  E-value=2.4e-12  Score=118.94  Aligned_cols=146  Identities=10%  Similarity=-0.015  Sum_probs=97.6

Q ss_pred             HHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCC--------CCCCceEEE
Q 009871          322 LMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKP--------PFLAKLITK  393 (523)
Q Consensus       322 ~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~--------~~~~~v~~~  393 (523)
                      .|.+++... ...++.+|||+|||+|..+..++..|. +|+++|+|+.|++.|+++...+...        ....++.+.
T Consensus        10 ~l~~~~~~l-~~~~~~~vLD~GCG~G~~~~~la~~g~-~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~   87 (203)
T 1pjz_A           10 DLQQYWSSL-NVVPGARVLVPLCGKSQDMSWLSGQGY-HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIW   87 (203)
T ss_dssp             HHHHHHHHH-CCCTTCEEEETTTCCSHHHHHHHHHCC-EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEE
T ss_pred             HHHHHHHhc-ccCCCCEEEEeCCCCcHhHHHHHHCCC-eEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEE
Confidence            445555432 234778999999999998888888864 8999999999999998875431000        001356666


Q ss_pred             eeecCCCCcchhhhhhcC-CCccEEEEccccCCCC--ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec--------
Q 009871          394 RLEWGNRDHIEAIKEENN-EGFEVILGTDVSYIPE--AILPLFATAKELTASSNKSLREDQQPAFILCHIFR--------  462 (523)
Q Consensus       394 ~ldw~~~~~~~~~~~~~~-~~fD~Ii~~d~~y~~~--~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r--------  462 (523)
                      ..|..+..       ... ++||+|++..++++..  ....+++.+.++|         +|||.+++.....        
T Consensus        88 ~~d~~~l~-------~~~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~L---------kpgG~~~l~~~~~~~~~~~~~  151 (203)
T 1pjz_A           88 CGDFFALT-------ARDIGHCAAFYDRAAMIALPADMRERYVQHLEALM---------PQACSGLLITLEYDQALLEGP  151 (203)
T ss_dssp             EECCSSST-------HHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHS---------CSEEEEEEEEESSCSSSSSSC
T ss_pred             ECccccCC-------cccCCCEEEEEECcchhhCCHHHHHHHHHHHHHHc---------CCCcEEEEEEEecCccccCCC
Confidence            66654431       111 5899999987776543  4556899999999         7799844433221        


Q ss_pred             --CCChhHHHHHHHHcCCEEEEEcCC
Q 009871          463 --QVDEPSMLSAATQCGFRLVDKWPS  486 (523)
Q Consensus       463 --~~~~~~~~~~~~~~gf~~~~~~~~  486 (523)
                        ..+.+++.+.+.+ ||++..+...
T Consensus       152 ~~~~~~~el~~~~~~-gf~i~~~~~~  176 (203)
T 1pjz_A          152 PFSVPQTWLHRVMSG-NWEVTKVGGQ  176 (203)
T ss_dssp             CCCCCHHHHHHTSCS-SEEEEEEEES
T ss_pred             CCCCCHHHHHHHhcC-CcEEEEeccc
Confidence              1234556666666 9998877553

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.33  E-value=3.1e-12  Score=116.66  Aligned_cols=117  Identities=19%  Similarity=0.235  Sum_probs=89.0

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEEEc
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTME  153 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~  153 (523)
                      .++.+|||+|||+|..+..+++.  +.+|+|+|+|+.|++.|+++.    .++.+.++|+.+.    ++++++||+|++.
T Consensus        45 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~~~~~~~~a~~~~----~~~~~~~~d~~~~----~~~~~~~D~i~~~  114 (195)
T 3cgg_A           45 PRGAKILDAGCGQGRIGGYLSKQ--GHDVLGTDLDPILIDYAKQDF----PEARWVVGDLSVD----QISETDFDLIVSA  114 (195)
T ss_dssp             CTTCEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHC----TTSEEEECCTTTS----CCCCCCEEEEEEC
T ss_pred             cCCCeEEEECCCCCHHHHHHHHC--CCcEEEEcCCHHHHHHHHHhC----CCCcEEEcccccC----CCCCCceeEEEEC
Confidence            47789999999999999999988  568999999999999999875    3588999999876    5667899999983


Q ss_pred             -cccccc-----e-eeec-ceEEecCCeEEEe------eCHHHHHHHHHhCCCcEEEEEeE
Q 009871          154 -RLTGKD-----Q-KISE-NFYVRGDGTRAFY------FSNDFLTSLFKENGFDVEELGLC  200 (523)
Q Consensus       154 -~~~~~~-----~-~~~~-~~~~~~~g~~~~~------~~~~~l~~ll~~~Gf~~~~~~~~  200 (523)
                       .+....     . .+.. ...++++|..++.      ++.+++.++++++||.++.+...
T Consensus       115 ~~~~~~~~~~~~~~~l~~~~~~l~~~G~l~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~  175 (195)
T 3cgg_A          115 GNVMGFLAEDGREPALANIHRALGADGRAVIGFGAGRGWVFGDFLEVAERVGLELENAFES  175 (195)
T ss_dssp             CCCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEETTSSCCHHHHHHHHHHHTEEEEEEESS
T ss_pred             CcHHhhcChHHHHHHHHHHHHHhCCCCEEEEEeCCCCCcCHHHHHHHHHHcCCEEeeeecc
Confidence             221110     0 0000 1246777776652      47899999999999998776543

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=99.33  E-value=8e-11  Score=119.26  Aligned_cols=167  Identities=20%  Similarity=0.192  Sum_probs=107.3

Q ss_pred             EEEEEEcCceEEEEEecccccccCCCcccccchhHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEc
Q 009871          286 MIEVNLRDRSFKIEVLSKEYQHTCRSTGLMLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATD  365 (523)
Q Consensus       286 ~~~~~~~~~~~~i~~~~~~~~~~~~~~G~~~W~~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D  365 (523)
                      ...+..+|..+.+....      .-.||.. |+ ......++....  .+|++|||+|||+|.++..++..++. |+++|
T Consensus       175 ~~~v~E~g~~f~vd~~~------~~~tG~f-~d-qr~~r~~l~~~~--~~g~~VLDlg~GtG~~sl~~a~~ga~-V~avD  243 (393)
T 4dmg_A          175 VLEVEEDGLRFPIPLAL------AQKTGYY-LD-QRENRRLFEAMV--RPGERVLDVYSYVGGFALRAARKGAY-ALAVD  243 (393)
T ss_dssp             EEEEEETTEEEEEETTT------CCTTSSC-GG-GHHHHHHHHTTC--CTTCEEEEESCTTTHHHHHHHHTTCE-EEEEE
T ss_pred             cEEEEECCEEEEEechh------ccccCcC-CC-HHHHHHHHHHHh--cCCCeEEEcccchhHHHHHHHHcCCe-EEEEE
Confidence            44566677777765321      1244432 22 222234444332  25899999999999999998888766 99999


Q ss_pred             CChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCccEEEEccccCCC---------CChHHHHHHH
Q 009871          366 GDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIP---------EAILPLFATA  436 (523)
Q Consensus       366 ~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~---------~~~~~l~~~l  436 (523)
                      +|+.+++.+++|++.|++.   .+  +...|.     ...+..+ .+.||+|++....+..         ..+..++..+
T Consensus       244 is~~al~~a~~n~~~ng~~---~~--~~~~D~-----~~~l~~~-~~~fD~Ii~dpP~f~~~~~~~~~~~~~~~~ll~~a  312 (393)
T 4dmg_A          244 KDLEALGVLDQAALRLGLR---VD--IRHGEA-----LPTLRGL-EGPFHHVLLDPPTLVKRPEELPAMKRHLVDLVREA  312 (393)
T ss_dssp             SCHHHHHHHHHHHHHHTCC---CE--EEESCH-----HHHHHTC-CCCEEEEEECCCCCCSSGGGHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCC---Cc--EEEccH-----HHHHHHh-cCCCCEEEECCCcCCCCHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999875   22  222221     1111122 3349999986443332         2345777788


Q ss_pred             HHHhhccCCCCCCCCCcEEEEEEeecCCChhHHH----HHHHHcCCEEEEE
Q 009871          437 KELTASSNKSLREDQQPAFILCHIFRQVDEPSML----SAATQCGFRLVDK  483 (523)
Q Consensus       437 ~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~~----~~~~~~gf~~~~~  483 (523)
                      .++|         +|||.++++......+.+.|.    +.+.+.|..+..+
T Consensus       313 ~~~L---------kpGG~Lv~~s~s~~~~~~~f~~~v~~a~~~~g~~~~i~  354 (393)
T 4dmg_A          313 LRLL---------AEEGFLWLSSCSYHLRLEDLLEVARRAAADLGRRLRVH  354 (393)
T ss_dssp             HHTE---------EEEEEEEEEECCTTSCHHHHHHHHHHHHHHHTCCEEEE
T ss_pred             HHhc---------CCCCEEEEEECCCCCCHHHHHHHHHHHHHHhCCeEEEE
Confidence            8888         679999988877666665544    3445566555444

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=99.33  E-value=4.4e-12  Score=123.18  Aligned_cols=124  Identities=15%  Similarity=0.186  Sum_probs=96.0

Q ss_pred             CCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCC
Q 009871          334 VAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG  413 (523)
Q Consensus       334 ~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~  413 (523)
                      .++.+|||||||+|.++..++.. ..+|+++|+|+.|++.++++.         .++.+...|..+.       ++ +++
T Consensus        56 ~~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~~---------~~~~~~~~d~~~~-------~~-~~~  117 (279)
T 3ccf_A           56 QPGEFILDLGCGTGQLTEKIAQS-GAEVLGTDNAATMIEKARQNY---------PHLHFDVADARNF-------RV-DKP  117 (279)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHC---------TTSCEEECCTTTC-------CC-SSC
T ss_pred             CCCCEEEEecCCCCHHHHHHHhC-CCeEEEEECCHHHHHHHHhhC---------CCCEEEECChhhC-------Cc-CCC
Confidence            46789999999999888888774 458999999999999998764         1344555554432       12 468


Q ss_pred             ccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecC-----------------------------C
Q 009871          414 FEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ-----------------------------V  464 (523)
Q Consensus       414 fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~-----------------------------~  464 (523)
                      ||+|+++.++++..+...+++.+.++|         +|||.+++......                             .
T Consensus       118 fD~v~~~~~l~~~~d~~~~l~~~~~~L---------kpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (279)
T 3ccf_A          118 LDAVFSNAMLHWVKEPEAAIASIHQAL---------KSGGRFVAEFGGKGNIKYILEALYNALETLGIHNPQALNPWYFP  188 (279)
T ss_dssp             EEEEEEESCGGGCSCHHHHHHHHHHHE---------EEEEEEEEEEECTTTTHHHHHHHHHHHHHHTCCCGGGGCCCCCC
T ss_pred             cCEEEEcchhhhCcCHHHHHHHHHHhc---------CCCcEEEEEecCCcchHHHHHHHHHHHHhcCCccccCcCceeCC
Confidence            999999999999889999999999999         67999988765421                             1


Q ss_pred             ChhHHHHHHHHcCCEEEEEc
Q 009871          465 DEPSMLSAATQCGFRLVDKW  484 (523)
Q Consensus       465 ~~~~~~~~~~~~gf~~~~~~  484 (523)
                      +...+.+.+++.||++..+.
T Consensus       189 ~~~~~~~~l~~aGf~~~~~~  208 (279)
T 3ccf_A          189 SIGEYVNILEKQGFDVTYAA  208 (279)
T ss_dssp             CHHHHHHHHHHHTEEEEEEE
T ss_pred             CHHHHHHHHHHcCCEEEEEE
Confidence            23456777889999987764

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=99.33  E-value=6.4e-12  Score=125.49  Aligned_cols=114  Identities=17%  Similarity=0.202  Sum_probs=90.6

Q ss_pred             HHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCc
Q 009871          323 MAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDH  402 (523)
Q Consensus       323 la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~  402 (523)
                      ..+.+.......++++|||||||+|.++..+++.++.+|+++|+++ +++.+++|+..|+..   .++.+...|..+.  
T Consensus        52 ~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~-~~~~a~~~~~~~~~~---~~i~~~~~d~~~~--  125 (340)
T 2fyt_A           52 YRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSE-ILYQAMDIIRLNKLE---DTITLIKGKIEEV--  125 (340)
T ss_dssp             HHHHHHHCGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESST-HHHHHHHHHHHTTCT---TTEEEEESCTTTS--
T ss_pred             HHHHHHhhhhhcCCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHH-HHHHHHHHHHHcCCC---CcEEEEEeeHHHh--
Confidence            4456666656678899999999999888888888777999999997 999999999998874   4677776665543  


Q ss_pred             chhhhhhcCCCccEEEEccc---cCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEE
Q 009871          403 IEAIKEENNEGFEVILGTDV---SYIPEAILPLFATAKELTASSNKSLREDQQPAFI  456 (523)
Q Consensus       403 ~~~~~~~~~~~fD~Ii~~d~---~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~  456 (523)
                           +++.++||+|++..+   +.+...+..++..+.++|         +|||.++
T Consensus       126 -----~~~~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~L---------kpgG~li  168 (340)
T 2fyt_A          126 -----HLPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYL---------AKGGSVY  168 (340)
T ss_dssp             -----CCSCSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHE---------EEEEEEE
T ss_pred             -----cCCCCcEEEEEEcCchhhccCHHHHHHHHHHHHhhc---------CCCcEEE
Confidence                 233468999999874   444567788999999999         6789887

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=99.33  E-value=2.4e-12  Score=116.87  Aligned_cols=113  Identities=17%  Similarity=0.312  Sum_probs=86.4

Q ss_pred             CCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCC
Q 009871          334 VAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG  413 (523)
Q Consensus       334 ~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~  413 (523)
                      .++.+|||+|||+|.++..+++.+..+|+++|+++.+++.+++|+..+++.   .++.+...|+.+.  ...+ +....+
T Consensus        43 ~~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~---~~~~~~~~d~~~~--~~~~-~~~~~~  116 (187)
T 2fhp_A           43 FDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEP---EKFEVRKMDANRA--LEQF-YEEKLQ  116 (187)
T ss_dssp             CSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCG---GGEEEEESCHHHH--HHHH-HHTTCC
T ss_pred             cCCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCC---cceEEEECcHHHH--HHHH-HhcCCC
Confidence            478899999999998888788777779999999999999999999998763   4577766655431  1100 112568


Q ss_pred             ccEEEEccccCCCCChHHHHHHH--HHHhhccCCCCCCCCCcEEEEEEeec
Q 009871          414 FEVILGTDVSYIPEAILPLFATA--KELTASSNKSLREDQQPAFILCHIFR  462 (523)
Q Consensus       414 fD~Ii~~d~~y~~~~~~~l~~~l--~~ll~~~~~~~~~~~~g~~~l~~~~r  462 (523)
                      ||+|+++.+ |........++.+  .++|         +|+|.++++....
T Consensus       117 fD~i~~~~~-~~~~~~~~~~~~l~~~~~L---------~~gG~l~~~~~~~  157 (187)
T 2fhp_A          117 FDLVLLDPP-YAKQEIVSQLEKMLERQLL---------TNEAVIVCETDKT  157 (187)
T ss_dssp             EEEEEECCC-GGGCCHHHHHHHHHHTTCE---------EEEEEEEEEEETT
T ss_pred             CCEEEECCC-CCchhHHHHHHHHHHhccc---------CCCCEEEEEeCCc
Confidence            999998766 6666778888888  6667         6799999887664

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.33  E-value=8.3e-12  Score=117.03  Aligned_cols=118  Identities=15%  Similarity=0.204  Sum_probs=91.4

Q ss_pred             HHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCC
Q 009871          320 AHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGN  399 (523)
Q Consensus       320 a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~  399 (523)
                      ...+.+.+.....  ++.+|||||||+|.++..++..+. +|+++|+++.+++.+++++..++     .++.+...|..+
T Consensus        25 ~~~~~~~l~~~~~--~~~~vLDlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~-----~~~~~~~~d~~~   96 (227)
T 1ve3_A           25 IETLEPLLMKYMK--KRGKVLDLACGVGGFSFLLEDYGF-EVVGVDISEDMIRKAREYAKSRE-----SNVEFIVGDARK   96 (227)
T ss_dssp             HHHHHHHHHHSCC--SCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT-----CCCEEEECCTTS
T ss_pred             HHHHHHHHHHhcC--CCCeEEEEeccCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcC-----CCceEEECchhc
Confidence            3445556655443  478999999999988888888766 89999999999999999998765     245666666544


Q ss_pred             CCcchhhhhhcCCCccEEEEccc--cCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee
Q 009871          400 RDHIEAIKEENNEGFEVILGTDV--SYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIF  461 (523)
Q Consensus       400 ~~~~~~~~~~~~~~fD~Ii~~d~--~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~  461 (523)
                      .       ++++++||+|+++++  +++......+++.+.++|         +|||.+++....
T Consensus        97 ~-------~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L---------~~gG~l~~~~~~  144 (227)
T 1ve3_A           97 L-------SFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVL---------KPSGKFIMYFTD  144 (227)
T ss_dssp             C-------CSCTTCEEEEEEESCGGGCCHHHHHHHHHHHHHHE---------EEEEEEEEEEEC
T ss_pred             C-------CCCCCcEEEEEEcCchHhCCHHHHHHHHHHHHHHc---------CCCcEEEEEecC
Confidence            2       123468999999999  666667889999999999         679999887654

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=99.33  E-value=2.4e-12  Score=122.06  Aligned_cols=70  Identities=21%  Similarity=0.368  Sum_probs=60.1

Q ss_pred             CCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871           75 GRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM  152 (523)
Q Consensus        75 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~  152 (523)
                      ++.+|||+|||+|.++..+++.   .+|+|+|+|+.|++.|+++......++++.++|+.++    +++ ++||+|++
T Consensus        33 ~~~~vLdiG~G~G~~~~~l~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~----~~~-~~fD~v~~  102 (243)
T 3d2l_A           33 PGKRIADIGCGTGTATLLLADH---YEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMREL----ELP-EPVDAITI  102 (243)
T ss_dssp             TTCEEEEESCTTCHHHHHHTTT---SEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGGC----CCS-SCEEEEEE
T ss_pred             CCCeEEEecCCCCHHHHHHhhC---CeEEEEECCHHHHHHHHHhhhhcCCceEEEEcChhhc----CCC-CCcCEEEE
Confidence            4689999999999999998877   6799999999999999998654446789999999876    444 78999997

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=99.32  E-value=1.9e-11  Score=109.38  Aligned_cols=133  Identities=18%  Similarity=0.066  Sum_probs=93.5

Q ss_pred             chhHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeee
Q 009871          317 WESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLE  396 (523)
Q Consensus       317 W~~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ld  396 (523)
                      .+.+..|.+++....  .++.+|||+|||+|.++..++..+  +|+++|+|+.|++.      .       .++.+...|
T Consensus         7 ~~~~~~l~~~l~~~~--~~~~~vLD~GcG~G~~~~~l~~~~--~v~gvD~s~~~~~~------~-------~~~~~~~~d   69 (170)
T 3q87_B            7 GEDTYTLMDALEREG--LEMKIVLDLGTSTGVITEQLRKRN--TVVSTDLNIRALES------H-------RGGNLVRAD   69 (170)
T ss_dssp             CHHHHHHHHHHHHHT--CCSCEEEEETCTTCHHHHHHTTTS--EEEEEESCHHHHHT------C-------SSSCEEECS
T ss_pred             CccHHHHHHHHHhhc--CCCCeEEEeccCccHHHHHHHhcC--cEEEEECCHHHHhc------c-------cCCeEEECC
Confidence            345556666664421  356799999999998888888877  99999999999987      1       345565555


Q ss_pred             cCCCCcchhhhhhcCCCccEEEEccccCCCCCh---------HHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChh
Q 009871          397 WGNRDHIEAIKEENNEGFEVILGTDVSYIPEAI---------LPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEP  467 (523)
Q Consensus       397 w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~---------~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~  467 (523)
                      +.+.        +.+++||+|+++.+++.....         ..+++.+.+.+          |+|.+++.... .....
T Consensus        70 ~~~~--------~~~~~fD~i~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----------pgG~l~~~~~~-~~~~~  130 (170)
T 3q87_B           70 LLCS--------INQESVDVVVFNPPYVPDTDDPIIGGGYLGREVIDRFVDAV----------TVGMLYLLVIE-ANRPK  130 (170)
T ss_dssp             TTTT--------BCGGGCSEEEECCCCBTTCCCTTTBCCGGGCHHHHHHHHHC----------CSSEEEEEEEG-GGCHH
T ss_pred             hhhh--------cccCCCCEEEECCCCccCCccccccCCcchHHHHHHHHhhC----------CCCEEEEEEec-CCCHH
Confidence            5432        223689999998766643322         44555555555          48888887654 34556


Q ss_pred             HHHHHHHHcCCEEEEEcC
Q 009871          468 SMLSAATQCGFRLVDKWP  485 (523)
Q Consensus       468 ~~~~~~~~~gf~~~~~~~  485 (523)
                      .+.+.+++.||+...+..
T Consensus       131 ~l~~~l~~~gf~~~~~~~  148 (170)
T 3q87_B          131 EVLARLEERGYGTRILKV  148 (170)
T ss_dssp             HHHHHHHHTTCEEEEEEE
T ss_pred             HHHHHHHHCCCcEEEEEe
Confidence            788899999999988765

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=99.32  E-value=1.1e-12  Score=118.14  Aligned_cols=111  Identities=15%  Similarity=0.210  Sum_probs=83.3

Q ss_pred             CCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCC
Q 009871          333 IVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNE  412 (523)
Q Consensus       333 ~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~  412 (523)
                      ..++.+|||+|||+|.++..++..+..+|+++|+++.+++.+++|+..++..   .++.+...|+.+.      .+....
T Consensus        29 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~---~~~~~~~~d~~~~------~~~~~~   99 (177)
T 2esr_A           29 YFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAE---NRFTLLKMEAERA------IDCLTG   99 (177)
T ss_dssp             CCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCG---GGEEEECSCHHHH------HHHBCS
T ss_pred             hcCCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCC---CceEEEECcHHHh------HHhhcC
Confidence            3477899999999998888888887679999999999999999999988764   3566665544321      122245


Q ss_pred             CccEEEEccccCCCCChHHHHHHHH--HHhhccCCCCCCCCCcEEEEEEeec
Q 009871          413 GFEVILGTDVSYIPEAILPLFATAK--ELTASSNKSLREDQQPAFILCHIFR  462 (523)
Q Consensus       413 ~fD~Ii~~d~~y~~~~~~~l~~~l~--~ll~~~~~~~~~~~~g~~~l~~~~r  462 (523)
                      +||+|+++.+ |.......+++.+.  ++|         +|||.+++....+
T Consensus       100 ~fD~i~~~~~-~~~~~~~~~~~~l~~~~~L---------~~gG~l~~~~~~~  141 (177)
T 2esr_A          100 RFDLVFLDPP-YAKETIVATIEALAAKNLL---------SEQVMVVCETDKT  141 (177)
T ss_dssp             CEEEEEECCS-SHHHHHHHHHHHHHHTTCE---------EEEEEEEEEEETT
T ss_pred             CCCEEEECCC-CCcchHHHHHHHHHhCCCc---------CCCcEEEEEECCc
Confidence            7999998654 44345666777776  677         6799999887664

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=99.32  E-value=4.7e-12  Score=121.71  Aligned_cols=135  Identities=10%  Similarity=0.068  Sum_probs=98.2

Q ss_pred             HHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCc
Q 009871          323 MAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDH  402 (523)
Q Consensus       323 la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~  402 (523)
                      +++.+.......++.+|||||||+|.++..++..+ .+|+++|+|+.+++.++.+.          ++.+...|+.+.  
T Consensus        22 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~gvD~s~~~~~~a~~~~----------~~~~~~~d~~~~--   88 (261)
T 3ege_A           22 IVNAIINLLNLPKGSVIADIGAGTGGYSVALANQG-LFVYAVEPSIVMRQQAVVHP----------QVEWFTGYAENL--   88 (261)
T ss_dssp             HHHHHHHHHCCCTTCEEEEETCTTSHHHHHHHTTT-CEEEEECSCHHHHHSSCCCT----------TEEEECCCTTSC--
T ss_pred             HHHHHHHHhCCCCCCEEEEEcCcccHHHHHHHhCC-CEEEEEeCCHHHHHHHHhcc----------CCEEEECchhhC--
Confidence            34444443334578899999999998888888754 58999999999988776432          456666655432  


Q ss_pred             chhhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecC-------------------
Q 009871          403 IEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ-------------------  463 (523)
Q Consensus       403 ~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~-------------------  463 (523)
                           ++++++||+|++..++++......+++.+.++|         + ||.+++......                   
T Consensus        89 -----~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L---------k-gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (261)
T 3ege_A           89 -----ALPDKSVDGVISILAIHHFSHLEKSFQEMQRII---------R-DGTIVLLTFDIRLAQRIWLYDYFPFLWEDAL  153 (261)
T ss_dssp             -----CSCTTCBSEEEEESCGGGCSSHHHHHHHHHHHB---------C-SSCEEEEEECGGGCCCCGGGGTCHHHHHHHH
T ss_pred             -----CCCCCCEeEEEEcchHhhccCHHHHHHHHHHHh---------C-CcEEEEEEcCCchhHHHHHHHHHHHHhhhhh
Confidence                 234579999999999999999999999999999         7 886665544311                   


Q ss_pred             --C-ChhHHHHHHHHcCCEEEEEcCC
Q 009871          464 --V-DEPSMLSAATQCGFRLVDKWPS  486 (523)
Q Consensus       464 --~-~~~~~~~~~~~~gf~~~~~~~~  486 (523)
                        . ....+. .++++||....+...
T Consensus       154 ~~~~~~~~~~-~l~~aGF~~v~~~~~  178 (261)
T 3ege_A          154 RFLPLDEQIN-LLQENTKRRVEAIPF  178 (261)
T ss_dssp             TSCCHHHHHH-HHHHHHCSEEEEEEC
T ss_pred             hhCCCHHHHH-HHHHcCCCceeEEEe
Confidence              1 112345 888999987776443

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=99.32  E-value=9.6e-12  Score=119.16  Aligned_cols=108  Identities=11%  Similarity=0.154  Sum_probs=85.4

Q ss_pred             HhcCCCCCCCCeEEEECCCccHHHHHHHhcC-CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchh
Q 009871          327 LARNPTIVAGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEA  405 (523)
Q Consensus       327 l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~  405 (523)
                      +.......++.+|||||||+|.++..++... ..+|+++|+++.+++.++++.         .++.+...|..+.     
T Consensus        25 l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~---------~~~~~~~~d~~~~-----   90 (259)
T 2p35_A           25 LLAQVPLERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRL---------PNTNFGKADLATW-----   90 (259)
T ss_dssp             HHTTCCCSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHS---------TTSEEEECCTTTC-----
T ss_pred             HHHhcCCCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC---------CCcEEEECChhhc-----
Confidence            3343344577899999999998888888773 457999999999999998871         3456666555432     


Q ss_pred             hhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEe
Q 009871          406 IKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHI  460 (523)
Q Consensus       406 ~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~  460 (523)
                        + .+++||+|+++.++++......+++.+.++|         +|||.+++...
T Consensus        91 --~-~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L---------~pgG~l~~~~~  133 (259)
T 2p35_A           91 --K-PAQKADLLYANAVFQWVPDHLAVLSQLMDQL---------ESGGVLAVQMP  133 (259)
T ss_dssp             --C-CSSCEEEEEEESCGGGSTTHHHHHHHHGGGE---------EEEEEEEEEEE
T ss_pred             --C-ccCCcCEEEEeCchhhCCCHHHHHHHHHHhc---------CCCeEEEEEeC
Confidence              1 2568999999999999989999999999999         67999988754

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=99.32  E-value=1.9e-12  Score=121.52  Aligned_cols=76  Identities=13%  Similarity=0.183  Sum_probs=59.5

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCC-HHHHHHH---HhccccC-CCcEEEEEeeccCCccCCCCCCCcee
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFS-PRAVNLV---MTHKDFT-ETRVSTFVCDLISDDLSRQISPSSID  148 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S-~~~l~~a---~~~~~~~-~~~v~~~~~d~~~~~~~~~~~~~~fD  148 (523)
                      .++.+|||||||+|.++..++++.++.+|+|||+| +.|++.|   +++.... ..++.+.++|+..+  +..+ .+.+|
T Consensus        23 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l--~~~~-~d~v~   99 (225)
T 3p2e_A           23 QFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESL--PFEL-KNIAD   99 (225)
T ss_dssp             TCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBC--CGGG-TTCEE
T ss_pred             CCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHh--hhhc-cCeEE
Confidence            56789999999999999999988888999999999 7788777   7665433 35799999999866  2111 25677


Q ss_pred             EEEE
Q 009871          149 IVTM  152 (523)
Q Consensus       149 ~V~~  152 (523)
                      .|++
T Consensus       100 ~i~~  103 (225)
T 3p2e_A          100 SISI  103 (225)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            7665

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=99.32  E-value=5.6e-12  Score=122.24  Aligned_cols=144  Identities=15%  Similarity=0.173  Sum_probs=102.5

Q ss_pred             hhHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhc-CCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeee
Q 009871          318 ESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAG-SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLE  396 (523)
Q Consensus       318 ~~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~-~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ld  396 (523)
                      +.+..+.+.+..... .++.+|||+|||+|.++..++.. ...+|+++|+|+.+++.+++|+..++..    ++.+...|
T Consensus        93 ~~te~l~~~~l~~~~-~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~----~v~~~~~d  167 (276)
T 2b3t_A           93 PDTECLVEQALARLP-EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIK----NIHILQSD  167 (276)
T ss_dssp             TTHHHHHHHHHHHSC-SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCC----SEEEECCS
T ss_pred             chHHHHHHHHHHhcc-cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC----ceEEEEcc
Confidence            334445555544322 46779999999999988888865 4569999999999999999999988763    47777666


Q ss_pred             cCCCCcchhhhhhcCCCccEEEEccccCCC-------------------------CChHHHHHHHHHHhhccCCCCCCCC
Q 009871          397 WGNRDHIEAIKEENNEGFEVILGTDVSYIP-------------------------EAILPLFATAKELTASSNKSLREDQ  451 (523)
Q Consensus       397 w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~-------------------------~~~~~l~~~l~~ll~~~~~~~~~~~  451 (523)
                      +.+.        +..++||+|+++......                         ..+..+++.+.++|         +|
T Consensus       168 ~~~~--------~~~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~L---------kp  230 (276)
T 2b3t_A          168 WFSA--------LAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNAL---------VS  230 (276)
T ss_dssp             TTGG--------GTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGE---------EE
T ss_pred             hhhh--------cccCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhc---------CC
Confidence            6432        224689999997433221                         23466778888888         67


Q ss_pred             CcEEEEEEeecCCChhHHHHHHHHcCCEEEEEcC
Q 009871          452 QPAFILCHIFRQVDEPSMLSAATQCGFRLVDKWP  485 (523)
Q Consensus       452 ~g~~~l~~~~r~~~~~~~~~~~~~~gf~~~~~~~  485 (523)
                      ||.+++....  .....+.+.+++.||+..+++.
T Consensus       231 gG~l~~~~~~--~~~~~~~~~l~~~Gf~~v~~~~  262 (276)
T 2b3t_A          231 GGFLLLEHGW--QQGEAVRQAFILAGYHDVETCR  262 (276)
T ss_dssp             EEEEEEECCS--SCHHHHHHHHHHTTCTTCCEEE
T ss_pred             CCEEEEEECc--hHHHHHHHHHHHCCCcEEEEEe
Confidence            9999886533  3455678888899997655443

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=99.32  E-value=2.5e-12  Score=118.68  Aligned_cols=108  Identities=6%  Similarity=0.003  Sum_probs=83.9

Q ss_pred             CCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCc
Q 009871          335 AGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGF  414 (523)
Q Consensus       335 ~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~f  414 (523)
                      ++.+|||+|||+|.++..+++.++.+|+++|+|+.|++.+++|+..++.    .++.+...|+.+      ..+....+|
T Consensus        54 ~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~~~~~~~----~~v~~~~~D~~~------~~~~~~~~f  123 (202)
T 2fpo_A           54 VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKA----GNARVVNSNAMS------FLAQKGTPH  123 (202)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTC----CSEEEECSCHHH------HHSSCCCCE
T ss_pred             CCCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHcCC----CcEEEEECCHHH------HHhhcCCCC
Confidence            6789999999999888877888777999999999999999999999876    346665544322      111234689


Q ss_pred             cEEEEccccCCCCChHHHHHHHHH--HhhccCCCCCCCCCcEEEEEEeec
Q 009871          415 EVILGTDVSYIPEAILPLFATAKE--LTASSNKSLREDQQPAFILCHIFR  462 (523)
Q Consensus       415 D~Ii~~d~~y~~~~~~~l~~~l~~--ll~~~~~~~~~~~~g~~~l~~~~r  462 (523)
                      |+|++... |.......+++.+.+  +|         +|+|.+++.....
T Consensus       124 D~V~~~~p-~~~~~~~~~l~~l~~~~~L---------~pgG~l~i~~~~~  163 (202)
T 2fpo_A          124 NIVFVDPP-FRRGLLEETINLLEDNGWL---------ADEALIYVESEVE  163 (202)
T ss_dssp             EEEEECCS-SSTTTHHHHHHHHHHTTCE---------EEEEEEEEEEEGG
T ss_pred             CEEEECCC-CCCCcHHHHHHHHHhcCcc---------CCCcEEEEEECCC
Confidence            99998655 777778888888876  37         6799998877664

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=99.32  E-value=4.6e-12  Score=121.14  Aligned_cols=111  Identities=13%  Similarity=0.092  Sum_probs=83.4

Q ss_pred             HHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCc
Q 009871          323 MAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDH  402 (523)
Q Consensus       323 la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~  402 (523)
                      |.++|....  ..+.+|||||||+|.++..++..+ .+|+++|+|+.|++.|++          ..++.+...+..+.  
T Consensus        29 l~~~l~~~~--~~~~~vLDvGcGtG~~~~~l~~~~-~~v~gvD~s~~ml~~a~~----------~~~v~~~~~~~e~~--   93 (257)
T 4hg2_A           29 LFRWLGEVA--PARGDALDCGCGSGQASLGLAEFF-ERVHAVDPGEAQIRQALR----------HPRVTYAVAPAEDT--   93 (257)
T ss_dssp             HHHHHHHHS--SCSSEEEEESCTTTTTHHHHHTTC-SEEEEEESCHHHHHTCCC----------CTTEEEEECCTTCC--
T ss_pred             HHHHHHHhc--CCCCCEEEEcCCCCHHHHHHHHhC-CEEEEEeCcHHhhhhhhh----------cCCceeehhhhhhh--
Confidence            345665543  245699999999998888888776 589999999999987653          13566665554332  


Q ss_pred             chhhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecC
Q 009871          403 IEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ  463 (523)
Q Consensus       403 ~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~  463 (523)
                           ++++++||+|+++.++++.+ .+.+++.+.++|         +|||.+.+......
T Consensus        94 -----~~~~~sfD~v~~~~~~h~~~-~~~~~~e~~rvL---------kpgG~l~~~~~~~~  139 (257)
T 4hg2_A           94 -----GLPPASVDVAIAAQAMHWFD-LDRFWAELRRVA---------RPGAVFAAVTYGLT  139 (257)
T ss_dssp             -----CCCSSCEEEEEECSCCTTCC-HHHHHHHHHHHE---------EEEEEEEEEEECCC
T ss_pred             -----cccCCcccEEEEeeehhHhh-HHHHHHHHHHHc---------CCCCEEEEEECCCC
Confidence                 35578999999999997764 889999999999         67998876554433

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=99.32  E-value=6e-12  Score=117.52  Aligned_cols=120  Identities=13%  Similarity=0.210  Sum_probs=88.7

Q ss_pred             hcCCCCCeEEEECCCccccHHHHHhh-CCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeE
Q 009871           71 FSGAGRKDVLEVGCGAGNTIFPLIAA-YPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDI  149 (523)
Q Consensus        71 ~~~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~  149 (523)
                      +...++.+|||+|||+|.++..+++. +|..+|+|+|+|+.|++.+++++.. ..++..+.+|....... ++..+++|+
T Consensus        73 l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~-~~ni~~V~~d~~~p~~~-~~~~~~vDv  150 (233)
T 4df3_A           73 LPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRD-RRNIFPILGDARFPEKY-RHLVEGVDG  150 (233)
T ss_dssp             CCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTT-CTTEEEEESCTTCGGGG-TTTCCCEEE
T ss_pred             cCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHh-hcCeeEEEEeccCcccc-ccccceEEE
Confidence            45578999999999999999999998 7889999999999999999987643 36789999998764322 456789999


Q ss_pred             EEE-cc-------ccccceeeecceEEecCCeEEEee-------------CHHHHHHHHHhCCCcEEEE
Q 009871          150 VTM-ER-------LTGKDQKISENFYVRGDGTRAFYF-------------SNDFLTSLFKENGFDVEEL  197 (523)
Q Consensus       150 V~~-~~-------~~~~~~~~~~~~~~~~~g~~~~~~-------------~~~~l~~ll~~~Gf~~~~~  197 (523)
                      |++ ..       ++....     .+++++|.++...             ..++..+.|+++||++++.
T Consensus       151 Vf~d~~~~~~~~~~l~~~~-----r~LKpGG~lvI~ik~r~~d~~~p~~~~~~~ev~~L~~~GF~l~e~  214 (233)
T 4df3_A          151 LYADVAQPEQAAIVVRNAR-----FFLRDGGYMLMAIKARSIDVTTEPSEVYKREIKTLMDGGLEIKDV  214 (233)
T ss_dssp             EEECCCCTTHHHHHHHHHH-----HHEEEEEEEEEEEECCHHHHHTCCCHHHHHHHHHHHHTTCCEEEE
T ss_pred             EEEeccCChhHHHHHHHHH-----HhccCCCEEEEEEecccCCCCCChHHHHHHHHHHHHHCCCEEEEE
Confidence            998 11       111111     2577777765421             1234466778899998665

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=99.31  E-value=5.1e-12  Score=116.87  Aligned_cols=117  Identities=15%  Similarity=0.161  Sum_probs=85.7

Q ss_pred             CCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCC-CcEEEEEeeccCCccCCCCCCCceeEEEEc
Q 009871           75 GRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQISPSSIDIVTME  153 (523)
Q Consensus        75 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~  153 (523)
                      ++.+|||+|||+|..+..+++..|+.+|+|+|+|+.|++.|+++....+ .++++.++|+.+.    + ++++||+|++.
T Consensus        65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~----~-~~~~~D~i~~~  139 (207)
T 1jsx_A           65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEF----P-SEPPFDGVISR  139 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTS----C-CCSCEEEEECS
T ss_pred             CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhC----C-ccCCcCEEEEe
Confidence            4789999999999999999998888999999999999999998764332 3599999999865    2 35789999982


Q ss_pred             cccccceeeec-ceEEecCCeEEEe---eCHHHHHHHHHhCCCcEEEEE
Q 009871          154 RLTGKDQKISE-NFYVRGDGTRAFY---FSNDFLTSLFKENGFDVEELG  198 (523)
Q Consensus       154 ~~~~~~~~~~~-~~~~~~~g~~~~~---~~~~~l~~ll~~~Gf~~~~~~  198 (523)
                      .+......+.. .-.++++|.+++.   ...+++.+++.  ||..+++.
T Consensus       140 ~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~--g~~~~~~~  186 (207)
T 1jsx_A          140 AFASLNDMVSWCHHLPGEQGRFYALKGQMPEDEIALLPE--EYQVESVV  186 (207)
T ss_dssp             CSSSHHHHHHHHTTSEEEEEEEEEEESSCCHHHHHTSCT--TEEEEEEE
T ss_pred             ccCCHHHHHHHHHHhcCCCcEEEEEeCCCchHHHHHHhc--CCceeeee
Confidence            22110000000 1156777877664   46778888776  89876643

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=99.31  E-value=3.7e-12  Score=118.50  Aligned_cols=119  Identities=13%  Similarity=0.123  Sum_probs=87.5

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCC--CcEEEEEeeccCCccCCCCCCCceeEEE
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQISPSSIDIVT  151 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~V~  151 (523)
                      +++.+|||||||+|.++..+++.+|..+|+|+|+++.+++.|+++...++  .++++.++|..+.    ..+++.||+|+
T Consensus        20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~----~~~~~~~D~Iv   95 (230)
T 3lec_A           20 PKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSA----FEEADNIDTIT   95 (230)
T ss_dssp             CTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGG----CCGGGCCCEEE
T ss_pred             CCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhc----cccccccCEEE
Confidence            35789999999999999999999887889999999999999999875443  5799999999764    22334799987


Q ss_pred             E--------ccccccceeeecceEEecCCeEEE--eeCHHHHHHHHHhCCCcEEEEEeEe
Q 009871          152 M--------ERLTGKDQKISENFYVRGDGTRAF--YFSNDFLTSLFKENGFDVEELGLCC  201 (523)
Q Consensus       152 ~--------~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~l~~ll~~~Gf~~~~~~~~~  201 (523)
                      .        .+++..+..     .+++.|.++.  ....+.+++.|.+.||.+++...+.
T Consensus        96 iaGmGg~lI~~IL~~~~~-----~l~~~~~lIlqp~~~~~~lr~~L~~~Gf~i~~E~lv~  150 (230)
T 3lec_A           96 ICGMGGRLIADILNNDID-----KLQHVKTLVLQPNNREDDLRKWLAANDFEIVAEDILT  150 (230)
T ss_dssp             EEEECHHHHHHHHHHTGG-----GGTTCCEEEEEESSCHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             EeCCchHHHHHHHHHHHH-----HhCcCCEEEEECCCChHHHHHHHHHCCCEEEEEEEEE
Confidence            6        222222221     1223333322  1258899999999999988766543

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=99.31  E-value=3.3e-12  Score=117.15  Aligned_cols=151  Identities=13%  Similarity=0.062  Sum_probs=101.2

Q ss_pred             CCCCeEEEECCCccHHHHHHHhc--CCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcC
Q 009871          334 VAGKKVLELGCGCGGICSMVAAG--SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENN  411 (523)
Q Consensus       334 ~~~~~VLElG~G~G~l~~~~a~~--~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~  411 (523)
                      .++.+|||+|||+|.++..++..  ...+|+++|+++.+++.+++|+..++..   .++.+...|..+.      ....+
T Consensus        21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~---~~v~~~~~d~~~~------~~~~~   91 (197)
T 3eey_A           21 KEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLI---DRVTLIKDGHQNM------DKYID   91 (197)
T ss_dssp             CTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCG---GGEEEECSCGGGG------GGTCC
T ss_pred             CCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC---CCeEEEECCHHHH------hhhcc
Confidence            46789999999999888888887  3459999999999999999999998763   4567766554322      12335


Q ss_pred             CCccEEEEccccCCC---------CChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCC----hhHH---HHHHHH
Q 009871          412 EGFEVILGTDVSYIP---------EAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVD----EPSM---LSAATQ  475 (523)
Q Consensus       412 ~~fD~Ii~~d~~y~~---------~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~----~~~~---~~~~~~  475 (523)
                      ++||+|+++..++..         .....+++.+.++|         +|||.++++.......    ...+   +..+..
T Consensus        92 ~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L---------k~gG~l~~~~~~~~~~~~~~~~~~~~~~~~l~~  162 (197)
T 3eey_A           92 CPVKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELL---------VTGGIITVVIYYGGDTGFEEKEKVLEFLKGVDQ  162 (197)
T ss_dssp             SCEEEEEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHE---------EEEEEEEEEECCBTTTBSHHHHHHHHHHTTSCT
T ss_pred             CCceEEEEcCCcccCcccccccCcccHHHHHHHHHHhC---------cCCCEEEEEEccCCCCcHHHHHHHHHHHHhCCC
Confidence            789999987544221         13356899999999         6799998876432211    1122   222344


Q ss_pred             cCCEEEEEcCCCCCCCCcchhhccccc
Q 009871          476 CGFRLVDKWPSKNSASPSESIISSWFS  502 (523)
Q Consensus       476 ~gf~~~~~~~~~~~~~~~~~~~~~~~~  502 (523)
                      .+|.+......+....+...++..+.+
T Consensus       163 ~~~~v~~~~~~~~~~~pp~~~~~~~~~  189 (197)
T 3eey_A          163 KKFIVQRTDFINQANCPPILVCIEKIS  189 (197)
T ss_dssp             TTEEEEEEEETTCCSCCCEEEEEEECC
T ss_pred             CcEEEEEEEeccCccCCCeEEEEEEcc
Confidence            678887775544444444444444433

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=99.31  E-value=5.1e-12  Score=117.67  Aligned_cols=122  Identities=14%  Similarity=0.088  Sum_probs=92.8

Q ss_pred             cchhHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEee
Q 009871          316 LWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRL  395 (523)
Q Consensus       316 ~W~~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l  395 (523)
                      .|-....+..++.......++.+|||+|||+|.++..++..+ .+|+++|+++.+++.+++++..+      .++.+...
T Consensus        32 ~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~~~------~~~~~~~~  104 (216)
T 3ofk_A           32 NPFERERHTQLLRLSLSSGAVSNGLEIGCAAGAFTEKLAPHC-KRLTVIDVMPRAIGRACQRTKRW------SHISWAAT  104 (216)
T ss_dssp             CHHHHHHHHHHHHHHTTTSSEEEEEEECCTTSHHHHHHGGGE-EEEEEEESCHHHHHHHHHHTTTC------SSEEEEEC
T ss_pred             CHhHHHHHHHHHHHHcccCCCCcEEEEcCCCCHHHHHHHHcC-CEEEEEECCHHHHHHHHHhcccC------CCeEEEEc
Confidence            344444455555544444577899999999998888888876 48999999999999999887653      35677776


Q ss_pred             ecCCCCcchhhhhhcCCCccEEEEccccCCCCCh---HHHHHHHHHHhhccCCCCCCCCCcEEEEEEee
Q 009871          396 EWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAI---LPLFATAKELTASSNKSLREDQQPAFILCHIF  461 (523)
Q Consensus       396 dw~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~---~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~  461 (523)
                      |..+..        +.++||+|+++.++++....   ..+++.+.++|         +|||.++++...
T Consensus       105 d~~~~~--------~~~~fD~v~~~~~l~~~~~~~~~~~~l~~~~~~L---------~pgG~l~~~~~~  156 (216)
T 3ofk_A          105 DILQFS--------TAELFDLIVVAEVLYYLEDMTQMRTAIDNMVKML---------APGGHLVFGSAR  156 (216)
T ss_dssp             CTTTCC--------CSCCEEEEEEESCGGGSSSHHHHHHHHHHHHHTE---------EEEEEEEEEEEC
T ss_pred             chhhCC--------CCCCccEEEEccHHHhCCCHHHHHHHHHHHHHHc---------CCCCEEEEEecC
Confidence            665432        25689999999999987766   46688999999         679999987643

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=99.31  E-value=1.3e-11  Score=114.01  Aligned_cols=113  Identities=17%  Similarity=0.194  Sum_probs=87.1

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCC-CcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQISPSSIDIVTM  152 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~V~~  152 (523)
                      .++.+|||+|||+|.++..+++. +..+|+|+|+|+.|++.|+++..... .++++.++|+.+.      .+++||+|++
T Consensus        59 ~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~------~~~~fD~i~~  131 (205)
T 3grz_A           59 VKPLTVADVGTGSGILAIAAHKL-GAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLAD------VDGKFDLIVA  131 (205)
T ss_dssp             SSCCEEEEETCTTSHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTT------CCSCEEEEEE
T ss_pred             cCCCEEEEECCCCCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEecccccc------CCCCceEEEE
Confidence            46789999999999999998875 45689999999999999999765333 3489999999743      3579999999


Q ss_pred             -------ccccccceeeecceEEecCCeEEEe----eCHHHHHHHHHhCCCcEEEEE
Q 009871          153 -------ERLTGKDQKISENFYVRGDGTRAFY----FSNDFLTSLFKENGFDVEELG  198 (523)
Q Consensus       153 -------~~~~~~~~~~~~~~~~~~~g~~~~~----~~~~~l~~ll~~~Gf~~~~~~  198 (523)
                             ..++....+     .++++|.+++.    .+.+++.++++++||+++.+.
T Consensus       132 ~~~~~~~~~~l~~~~~-----~L~~gG~l~~~~~~~~~~~~~~~~~~~~Gf~~~~~~  183 (205)
T 3grz_A          132 NILAEILLDLIPQLDS-----HLNEDGQVIFSGIDYLQLPKIEQALAENSFQIDLKM  183 (205)
T ss_dssp             ESCHHHHHHHGGGSGG-----GEEEEEEEEEEEEEGGGHHHHHHHHHHTTEEEEEEE
T ss_pred             CCcHHHHHHHHHHHHH-----hcCCCCEEEEEecCcccHHHHHHHHHHcCCceEEee
Confidence                   222233333     56777877652    367889999999999987654

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=99.31  E-value=7.1e-12  Score=117.56  Aligned_cols=121  Identities=15%  Similarity=0.227  Sum_probs=85.8

Q ss_pred             hhhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCcee
Q 009871           69 RYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSID  148 (523)
Q Consensus        69 ~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD  148 (523)
                      +.++ .++.+|||+|||+|..+..+++.  +.+|+|+|+|+.|++.|+++.      .++.++|+.+...  ++++++||
T Consensus        27 ~~~~-~~~~~vLdiG~G~G~~~~~l~~~--~~~~~~~D~~~~~~~~~~~~~------~~~~~~d~~~~~~--~~~~~~fD   95 (230)
T 3cc8_A           27 KHIK-KEWKEVLDIGCSSGALGAAIKEN--GTRVSGIEAFPEAAEQAKEKL------DHVVLGDIETMDM--PYEEEQFD   95 (230)
T ss_dssp             TTCC-TTCSEEEEETCTTSHHHHHHHTT--TCEEEEEESSHHHHHHHHTTS------SEEEESCTTTCCC--CSCTTCEE
T ss_pred             HHhc-cCCCcEEEeCCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHhC------CcEEEcchhhcCC--CCCCCccC
Confidence            3444 57789999999999999999988  478999999999999999864      2688899875322  56778999


Q ss_pred             EEEE-----------------ccccccceeeecceEE-----------------ecC----CeEEEeeCHHHHHHHHHhC
Q 009871          149 IVTM-----------------ERLTGKDQKISENFYV-----------------RGD----GTRAFYFSNDFLTSLFKEN  190 (523)
Q Consensus       149 ~V~~-----------------~~~~~~~~~~~~~~~~-----------------~~~----g~~~~~~~~~~l~~ll~~~  190 (523)
                      +|++                 .+.+++++.+.-....                 ...    .....+++.+++.++++++
T Consensus        96 ~v~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  175 (230)
T 3cc8_A           96 CVIFGDVLEHLFDPWAVIEKVKPYIKQNGVILASIPNVSHISVLAPLLAGNWTYTEYGLLDKTHIRFFTFNEMLRMFLKA  175 (230)
T ss_dssp             EEEEESCGGGSSCHHHHHHHTGGGEEEEEEEEEEEECTTSHHHHHHHHTTCCCCBSSSTTBTTCCCCCCHHHHHHHHHHT
T ss_pred             EEEECChhhhcCCHHHHHHHHHHHcCCCCEEEEEeCCcchHHHHHHHhcCCceeccCCCCCcceEEEecHHHHHHHHHHc
Confidence            9999                 2223333332210000                 000    0112346899999999999


Q ss_pred             CCcEEEEEeE
Q 009871          191 GFDVEELGLC  200 (523)
Q Consensus       191 Gf~~~~~~~~  200 (523)
                      ||+++.+...
T Consensus       176 Gf~~~~~~~~  185 (230)
T 3cc8_A          176 GYSISKVDRV  185 (230)
T ss_dssp             TEEEEEEEEE
T ss_pred             CCeEEEEEec
Confidence            9998777553

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=99.31  E-value=2.1e-11  Score=120.98  Aligned_cols=170  Identities=15%  Similarity=0.079  Sum_probs=109.1

Q ss_pred             EEEEEEcCceEEEEEecccccccCCCcccccchhH--HHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEE
Q 009871          286 MIEVNLRDRSFKIEVLSKEYQHTCRSTGLMLWESA--HLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVA  363 (523)
Q Consensus       286 ~~~~~~~~~~~~i~~~~~~~~~~~~~~G~~~W~~a--~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~  363 (523)
                      ...+..+|..+.+.....      ..+|...-...  ..+++++..   ..++.+|||||||+|.++..++..++ +|++
T Consensus       111 ~~~i~e~g~~f~v~~~~~------~~tg~f~dq~~~~~~l~~~~~~---~~~~~~VLDlgcGtG~~sl~la~~ga-~V~~  180 (332)
T 2igt_A          111 TWPLSLLGVEFLGRFTAF------RHVGVFPEQIVHWEWLKNAVET---ADRPLKVLNLFGYTGVASLVAAAAGA-EVTH  180 (332)
T ss_dssp             EEEEEETTEEEEEECCSS------SCCSCCGGGHHHHHHHHHHHHH---SSSCCEEEEETCTTCHHHHHHHHTTC-EEEE
T ss_pred             ceEEEECCEEEEEecCcc------ccceechHHHHHHHHHHHHHHh---cCCCCcEEEcccccCHHHHHHHHcCC-EEEE
Confidence            445666787777763221      12343321111  124455432   13567999999999999988888876 9999


Q ss_pred             EcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhh--cCCCccEEEEccccCCC----------CChHH
Q 009871          364 TDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEE--NNEGFEVILGTDVSYIP----------EAILP  431 (523)
Q Consensus       364 ~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~--~~~~fD~Ii~~d~~y~~----------~~~~~  431 (523)
                      +|+|+.+++.+++|+..|++..  .++.+...|..+.     +...  ...+||+|++....|..          ..+..
T Consensus       181 VD~s~~al~~a~~n~~~~gl~~--~~v~~i~~D~~~~-----l~~~~~~~~~fD~Ii~dPP~~~~~~~~~~~~~~~~~~~  253 (332)
T 2igt_A          181 VDASKKAIGWAKENQVLAGLEQ--APIRWICEDAMKF-----IQREERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPL  253 (332)
T ss_dssp             ECSCHHHHHHHHHHHHHHTCTT--SCEEEECSCHHHH-----HHHHHHHTCCBSEEEECCCSEEECTTCCEEEHHHHHHH
T ss_pred             EECCHHHHHHHHHHHHHcCCCc--cceEEEECcHHHH-----HHHHHhcCCCceEEEECCccccCCchHHHHHHHHHHHH
Confidence            9999999999999999998742  1366654443221     1111  14689999996543332          23567


Q ss_pred             HHHHHHHHhhccCCCCCCCCCcEEEEEEeec-CCChhHHHHHHH----HcCCEEE
Q 009871          432 LFATAKELTASSNKSLREDQQPAFILCHIFR-QVDEPSMLSAAT----QCGFRLV  481 (523)
Q Consensus       432 l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r-~~~~~~~~~~~~----~~gf~~~  481 (523)
                      +++.+.++|         +|+|.+++..... ..+...|.+.++    +.|+++.
T Consensus       254 ll~~~~~~L---------kpgG~lli~~~~~~~~~~~~~~~~l~~a~~~~g~~v~  299 (332)
T 2igt_A          254 MLDICREIL---------SPKALGLVLTAYSIRASFYSMHELMRETMRGAGGVVA  299 (332)
T ss_dssp             HHHHHHHTB---------CTTCCEEEEEECCTTSCHHHHHHHHHHHTTTSCSEEE
T ss_pred             HHHHHHHhc---------CcCcEEEEEECCCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence            888888999         6799866655443 334445554444    6788876

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=99.31  E-value=5.6e-12  Score=117.68  Aligned_cols=125  Identities=12%  Similarity=0.129  Sum_probs=85.8

Q ss_pred             CCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHH----Hhcccc-CCCcEEEEEeeccCCccCCCCCCCce
Q 009871           73 GAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLV----MTHKDF-TETRVSTFVCDLISDDLSRQISPSSI  147 (523)
Q Consensus        73 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a----~~~~~~-~~~~v~~~~~d~~~~~~~~~~~~~~f  147 (523)
                      ..++.+|||||||+|.++..+++.+|+.+|+|+|+|+.|++.+    +++... ...+++++++|+.++    ++++++ 
T Consensus        25 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l----~~~~~~-   99 (218)
T 3mq2_A           25 SQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERL----PPLSGV-   99 (218)
T ss_dssp             TTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTC----CSCCCE-
T ss_pred             ccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhC----CCCCCC-
Confidence            4678899999999999999999999899999999999998863    322222 235899999999987    556666 


Q ss_pred             eEEEE-c--------cccccceeeec-ceEEecCCeEEEee------------------C----HHHHHHHHHhCCCcEE
Q 009871          148 DIVTM-E--------RLTGKDQKISE-NFYVRGDGTRAFYF------------------S----NDFLTSLFKENGFDVE  195 (523)
Q Consensus       148 D~V~~-~--------~~~~~~~~~~~-~~~~~~~g~~~~~~------------------~----~~~l~~ll~~~Gf~~~  195 (523)
                      |.|++ .        .+......+.. ...++++|.+++.+                  +    .+++..++.++||++.
T Consensus       100 d~v~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~i~  179 (218)
T 3mq2_A          100 GELHVLMPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLVALNLHAWRPSVPEVGEHPEPTPDSADEWLAPRYAEAGWKLA  179 (218)
T ss_dssp             EEEEEESCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEEEEEGGGBTTBCGGGTTCCCCCHHHHHHHHHHHHHHTTEEEE
T ss_pred             CEEEEEccchhhhhhhhccHHHHHHHHHHHcCCCcEEEEEeccccccccccccccCCccchHHHHHHHHHHHHHcCCCce
Confidence            76664 1        00000111100 11466677665421                  1    3457889999999998


Q ss_pred             EEEeEee
Q 009871          196 ELGLCCK  202 (523)
Q Consensus       196 ~~~~~~~  202 (523)
                      ++.....
T Consensus       180 ~~~~~~~  186 (218)
T 3mq2_A          180 DCRYLEP  186 (218)
T ss_dssp             EEEEECH
T ss_pred             eeeccch
Confidence            8876543

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=99.31  E-value=2.7e-12  Score=125.34  Aligned_cols=142  Identities=11%  Similarity=0.068  Sum_probs=95.9

Q ss_pred             CCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCC-----------C---------------
Q 009871          334 VAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPF-----------L---------------  387 (523)
Q Consensus       334 ~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~-----------~---------------  387 (523)
                      .++.+|||||||+|.+..+++.....+|+++|+|+.|++.+++++..+.....           .               
T Consensus        70 ~~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  149 (289)
T 2g72_A           70 VSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA  149 (289)
T ss_dssp             SCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred             CCCCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHh
Confidence            37789999999999744444444556999999999999999887653211000           0               


Q ss_pred             CceEEEeeecCCCCcchhhhhhcCCCccEEEEccccCC----CCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee--
Q 009871          388 AKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYI----PEAILPLFATAKELTASSNKSLREDQQPAFILCHIF--  461 (523)
Q Consensus       388 ~~v~~~~ldw~~~~~~~~~~~~~~~~fD~Ii~~d~~y~----~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~--  461 (523)
                      ..+.+...|..+...+.. ..+++++||+|+++.++++    ......+++.+.++|         +|||.+++....  
T Consensus       150 ~~~~~~~~D~~~~~~~~~-~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~L---------kpGG~l~~~~~~~~  219 (289)
T 2g72_A          150 RVKRVLPIDVHQPQPLGA-GSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLL---------RPGGHLLLIGALEE  219 (289)
T ss_dssp             HEEEEECCCTTSSSTTCS-SCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTE---------EEEEEEEEEEEESC
T ss_pred             hhceEEecccCCCCCccc-cccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhc---------CCCCEEEEEEecCc
Confidence            012333334333111100 0123457999999999887    446889999999999         679999986422  


Q ss_pred             ------------cCCChhHHHHHHHHcCCEEEEEcC
Q 009871          462 ------------RQVDEPSMLSAATQCGFRLVDKWP  485 (523)
Q Consensus       462 ------------r~~~~~~~~~~~~~~gf~~~~~~~  485 (523)
                                  +..+...+.+.++++||++..+..
T Consensus       220 ~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~  255 (289)
T 2g72_A          220 SWYLAGEARLTVVPVSEEEVREALVRSGYKVRDLRT  255 (289)
T ss_dssp             CEEEETTEEEECCCCCHHHHHHHHHHTTEEEEEEEE
T ss_pred             ceEEcCCeeeeeccCCHHHHHHHHHHcCCeEEEeeE
Confidence                        234567788999999999988754

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=99.31  E-value=4e-12  Score=117.18  Aligned_cols=112  Identities=11%  Similarity=0.029  Sum_probs=84.0

Q ss_pred             CCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCC-
Q 009871          335 AGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG-  413 (523)
Q Consensus       335 ~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~-  413 (523)
                      ++.+|||+|||+|.++..+++.++.+|+++|+|+.|++.+++|+..++...  .++.+...|..+.     +..+..++ 
T Consensus        53 ~~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~--~~v~~~~~d~~~~-----~~~~~~~~~  125 (201)
T 2ift_A           53 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSS--EQAEVINQSSLDF-----LKQPQNQPH  125 (201)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCT--TTEEEECSCHHHH-----TTSCCSSCC
T ss_pred             CCCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHHhCCCc--cceEEEECCHHHH-----HHhhccCCC
Confidence            678999999999988888788877899999999999999999999987620  2456554443211     01112457 


Q ss_pred             ccEEEEccccCCCCChHHHHHHH--HHHhhccCCCCCCCCCcEEEEEEeecC
Q 009871          414 FEVILGTDVSYIPEAILPLFATA--KELTASSNKSLREDQQPAFILCHIFRQ  463 (523)
Q Consensus       414 fD~Ii~~d~~y~~~~~~~l~~~l--~~ll~~~~~~~~~~~~g~~~l~~~~r~  463 (523)
                      ||+|+++.+ |.......+++.+  .++|         +|||.++++...+.
T Consensus       126 fD~I~~~~~-~~~~~~~~~l~~~~~~~~L---------kpgG~l~i~~~~~~  167 (201)
T 2ift_A          126 FDVVFLDPP-FHFNLAEQAISLLCENNWL---------KPNALIYVETEKDK  167 (201)
T ss_dssp             EEEEEECCC-SSSCHHHHHHHHHHHTTCE---------EEEEEEEEEEESSS
T ss_pred             CCEEEECCC-CCCccHHHHHHHHHhcCcc---------CCCcEEEEEECCCC
Confidence            999999766 6667778888888  4468         67999998877654

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=99.31  E-value=8.1e-12  Score=121.73  Aligned_cols=118  Identities=19%  Similarity=0.294  Sum_probs=85.1

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEEEc
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTME  153 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~  153 (523)
                      .++.+|||+|||+|.++..+++.  +.+|+|+|+|+.|++.|+++....+.+++++++|+.+.    ++ +++||+|++.
T Consensus       119 ~~~~~vLD~GcG~G~~~~~l~~~--g~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~----~~-~~~fD~i~~~  191 (286)
T 3m70_A          119 ISPCKVLDLGCGQGRNSLYLSLL--GYDVTSWDHNENSIAFLNETKEKENLNISTALYDINAA----NI-QENYDFIVST  191 (286)
T ss_dssp             SCSCEEEEESCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGC----CC-CSCEEEEEEC
T ss_pred             cCCCcEEEECCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHcCCceEEEEeccccc----cc-cCCccEEEEc
Confidence            46889999999999999999988  56899999999999999998755445899999999876    33 7899999991


Q ss_pred             c---ccccce--eeec--ceEEecCCeEE-----------------EeeCHHHHHHHHHhCCCcEEEEEeE
Q 009871          154 R---LTGKDQ--KISE--NFYVRGDGTRA-----------------FYFSNDFLTSLFKENGFDVEELGLC  200 (523)
Q Consensus       154 ~---~~~~~~--~~~~--~~~~~~~g~~~-----------------~~~~~~~l~~ll~~~Gf~~~~~~~~  200 (523)
                      .   ......  .+..  ...++++|.++                 +.++.+++.+++.  +|+++.....
T Consensus       192 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~  260 (286)
T 3m70_A          192 VVFMFLNRERVPSIIKNMKEHTNVGGYNLIVAAMSTDDVPCPLPFSFTFAENELKEYYK--DWEFLEYNEN  260 (286)
T ss_dssp             SSGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCSSCCSCCBCTTHHHHHTT--TSEEEEEECC
T ss_pred             cchhhCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCCCCCCCCccccCCHHHHHHHhc--CCEEEEEEcc
Confidence            1   100000  0000  01345555432                 2457889999997  4888776543

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=99.31  E-value=8.4e-12  Score=126.38  Aligned_cols=119  Identities=18%  Similarity=0.142  Sum_probs=95.3

Q ss_pred             HHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCC
Q 009871          321 HLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNR  400 (523)
Q Consensus       321 ~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~  400 (523)
                      ..+.+++..+....++++|||||||+|.++..++..++.+|+++|++ .|++.+++++..|+..   .++.+...|..+.
T Consensus        49 ~~~~~~i~~~~~~~~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~a~~~~~~~~~~---~~v~~~~~d~~~~  124 (376)
T 3r0q_C           49 DAYFNAVFQNKHHFEGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMADHARALVKANNLD---HIVEVIEGSVEDI  124 (376)
T ss_dssp             HHHHHHHHTTTTTTTTCEEEEESCTTTHHHHHHHHTTCSEEEEEESS-TTHHHHHHHHHHTTCT---TTEEEEESCGGGC
T ss_pred             HHHHHHHHhccccCCCCEEEEeccCcCHHHHHHHhcCCCEEEEEccH-HHHHHHHHHHHHcCCC---CeEEEEECchhhc
Confidence            34566777777778899999999999998888888887799999999 9999999999999876   5677777666443


Q ss_pred             CcchhhhhhcCCCccEEEEccccCC---CCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEe
Q 009871          401 DHIEAIKEENNEGFEVILGTDVSYI---PEAILPLFATAKELTASSNKSLREDQQPAFILCHI  460 (523)
Q Consensus       401 ~~~~~~~~~~~~~fD~Ii~~d~~y~---~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~  460 (523)
                      .       + +++||+|++..+.|.   ...+..+++.+.++|         +|||.+++...
T Consensus       125 ~-------~-~~~~D~Iv~~~~~~~l~~e~~~~~~l~~~~~~L---------kpgG~li~~~~  170 (376)
T 3r0q_C          125 S-------L-PEKVDVIISEWMGYFLLRESMFDSVISARDRWL---------KPTGVMYPSHA  170 (376)
T ss_dssp             C-------C-SSCEEEEEECCCBTTBTTTCTHHHHHHHHHHHE---------EEEEEEESSEE
T ss_pred             C-------c-CCcceEEEEcChhhcccchHHHHHHHHHHHhhC---------CCCeEEEEecC
Confidence            1       2 268999999765555   366888999999999         67998876433

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=99.30  E-value=5.2e-12  Score=118.90  Aligned_cols=121  Identities=14%  Similarity=0.151  Sum_probs=88.7

Q ss_pred             CCCCeEEEECCC-ccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871           74 AGRKDVLEVGCG-AGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM  152 (523)
Q Consensus        74 ~~~~~iLDiGcG-~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~  152 (523)
                      .++.+|||+||| +|.++..+++.. +.+|+|+|+|+.|++.|+++....+.+++++++|+....   ++++++||+|++
T Consensus        54 ~~~~~vLDlG~G~~G~~~~~la~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~---~~~~~~fD~I~~  129 (230)
T 3evz_A           54 RGGEVALEIGTGHTAMMALMAEKFF-NCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIK---GVVEGTFDVIFS  129 (230)
T ss_dssp             CSSCEEEEECCTTTCHHHHHHHHHH-CCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSST---TTCCSCEEEEEE
T ss_pred             CCCCEEEEcCCCHHHHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhhh---hcccCceeEEEE
Confidence            578899999999 999999999885 578999999999999999987655458999999975331   455689999998


Q ss_pred             c-cccccc---------------------ee-eec-ceEEecCCeEEEee-----CHHHHHHHHHhCCCcEEEEE
Q 009871          153 E-RLTGKD---------------------QK-ISE-NFYVRGDGTRAFYF-----SNDFLTSLFKENGFDVEELG  198 (523)
Q Consensus       153 ~-~~~~~~---------------------~~-~~~-~~~~~~~g~~~~~~-----~~~~l~~ll~~~Gf~~~~~~  198 (523)
                      . .+....                     .. +.. ...++++|.+++..     ..+++.+++++.||.+..+.
T Consensus       130 npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~l~~~g~~~~~~~  204 (230)
T 3evz_A          130 APPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDKEKLLNVIKERGIKLGYSVKDIK  204 (230)
T ss_dssp             CCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecccHhHHHHHHHHHHHcCCceEEEE
Confidence            1 110000                     00 000 12578888887643     35678899999999776553

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=99.30  E-value=1.3e-11  Score=117.64  Aligned_cols=146  Identities=10%  Similarity=-0.051  Sum_probs=96.4

Q ss_pred             HHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHh----------cCCC---CCCC
Q 009871          322 LMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTA----------NLKP---PFLA  388 (523)
Q Consensus       322 ~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~----------n~~~---~~~~  388 (523)
                      .+.+++.......++.+|||+|||+|..+..++..|. +|+++|+|+.|++.|+++...          ++..   ....
T Consensus        55 ~l~~~~~~~~~~~~~~~vLD~GCG~G~~~~~La~~G~-~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (252)
T 2gb4_A           55 LLKKHLDTFLKGQSGLRVFFPLCGKAIEMKWFADRGH-TVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSG  133 (252)
T ss_dssp             HHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHTTC-EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTS
T ss_pred             HHHHHHHHhccCCCCCeEEEeCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHhcccccccccccccccccccccCCC
Confidence            3455554322223678999999999999888888865 899999999999999765421          0000   0113


Q ss_pred             ceEEEeeecCCCCcchhhhhhc-CCCccEEEEccccCCC--CChHHHHHHHHHHhhccCCCCCCCCCcEEEEE-Eeec--
Q 009871          389 KLITKRLEWGNRDHIEAIKEEN-NEGFEVILGTDVSYIP--EAILPLFATAKELTASSNKSLREDQQPAFILC-HIFR--  462 (523)
Q Consensus       389 ~v~~~~ldw~~~~~~~~~~~~~-~~~fD~Ii~~d~~y~~--~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~-~~~r--  462 (523)
                      ++.+...|..+.       +.. .++||+|++..++.+.  +....+++.+.++|         +|||.+++. ....  
T Consensus       134 ~i~~~~~D~~~l-------~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~L---------kpGG~l~l~~~~~~~~  197 (252)
T 2gb4_A          134 SISLYCCSIFDL-------PRANIGKFDRIWDRGALVAINPGDHDRYADIILSLL---------RKEFQYLVAVLSYDPT  197 (252)
T ss_dssp             SEEEEESCTTTG-------GGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTE---------EEEEEEEEEEEECCTT
T ss_pred             ceEEEECccccC-------CcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHc---------CCCeEEEEEEEecCCc
Confidence            566666554432       112 2689999988776553  34667899999999         679998643 3211  


Q ss_pred             -------CCChhHHHHHHHHcCCEEEEEcC
Q 009871          463 -------QVDEPSMLSAATQCGFRLVDKWP  485 (523)
Q Consensus       463 -------~~~~~~~~~~~~~~gf~~~~~~~  485 (523)
                             ..+.+++.+.+.. +|++.....
T Consensus       198 ~~~g~~~~~~~~el~~~l~~-~f~v~~~~~  226 (252)
T 2gb4_A          198 KHAGPPFYVPSAELKRLFGT-KCSMQCLEE  226 (252)
T ss_dssp             SCCCSSCCCCHHHHHHHHTT-TEEEEEEEE
T ss_pred             cCCCCCCCCCHHHHHHHhhC-CeEEEEEec
Confidence                   1344566666665 599877653

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=99.30  E-value=1.4e-11  Score=115.47  Aligned_cols=127  Identities=15%  Similarity=0.128  Sum_probs=98.4

Q ss_pred             CCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCC
Q 009871          334 VAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG  413 (523)
Q Consensus       334 ~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~  413 (523)
                      .++.+|||+|||+|.++..++..+ .+|+++|+++.+++.++.+..           .+...|..+..     .++.+++
T Consensus        31 ~~~~~vLdiG~G~G~~~~~l~~~~-~~~~~~D~~~~~~~~~~~~~~-----------~~~~~d~~~~~-----~~~~~~~   93 (230)
T 3cc8_A           31 KEWKEVLDIGCSSGALGAAIKENG-TRVSGIEAFPEAAEQAKEKLD-----------HVVLGDIETMD-----MPYEEEQ   93 (230)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHTTT-CEEEEEESSHHHHHHHHTTSS-----------EEEESCTTTCC-----CCSCTTC
T ss_pred             cCCCcEEEeCCCCCHHHHHHHhcC-CeEEEEeCCHHHHHHHHHhCC-----------cEEEcchhhcC-----CCCCCCc
Confidence            467899999999998888888884 799999999999998876431           33334433211     1234568


Q ss_pred             ccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee----------------------------cCCC
Q 009871          414 FEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIF----------------------------RQVD  465 (523)
Q Consensus       414 fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~----------------------------r~~~  465 (523)
                      ||+|++++++++......+++.+.++|         +|||.++++...                            +..+
T Consensus        94 fD~v~~~~~l~~~~~~~~~l~~~~~~L---------~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (230)
T 3cc8_A           94 FDCVIFGDVLEHLFDPWAVIEKVKPYI---------KQNGVILASIPNVSHISVLAPLLAGNWTYTEYGLLDKTHIRFFT  164 (230)
T ss_dssp             EEEEEEESCGGGSSCHHHHHHHTGGGE---------EEEEEEEEEEECTTSHHHHHHHHTTCCCCBSSSTTBTTCCCCCC
T ss_pred             cCEEEECChhhhcCCHHHHHHHHHHHc---------CCCCEEEEEeCCcchHHHHHHHhcCCceeccCCCCCcceEEEec
Confidence            999999999999888999999999999         679999987643                            1124


Q ss_pred             hhHHHHHHHHcCCEEEEEcCC
Q 009871          466 EPSMLSAATQCGFRLVDKWPS  486 (523)
Q Consensus       466 ~~~~~~~~~~~gf~~~~~~~~  486 (523)
                      ...+.+.++++||++..+...
T Consensus       165 ~~~~~~~l~~~Gf~~~~~~~~  185 (230)
T 3cc8_A          165 FNEMLRMFLKAGYSISKVDRV  185 (230)
T ss_dssp             HHHHHHHHHHTTEEEEEEEEE
T ss_pred             HHHHHHHHHHcCCeEEEEEec
Confidence            567888899999999887654

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=99.30  E-value=1.9e-11  Score=119.96  Aligned_cols=110  Identities=9%  Similarity=0.099  Sum_probs=86.7

Q ss_pred             CCCeEEEECCCccHHHHHHHh--cCCCEEEEEcCChHHHHHHHHHHHhc-CCCCCCCceEEEeeecCCCCcchhhhhhcC
Q 009871          335 AGKKVLELGCGCGGICSMVAA--GSADLVVATDGDSIALDLLAQNVTAN-LKPPFLAKLITKRLEWGNRDHIEAIKEENN  411 (523)
Q Consensus       335 ~~~~VLElG~G~G~l~~~~a~--~~~~~V~~~D~~~~~l~~~~~n~~~n-~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~  411 (523)
                      ++.+|||||||+|.++..++.  ....+|+++|+|+.+++.+++++..+ +.   ..++.+...|+.+..... ...+..
T Consensus        36 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~---~~~v~~~~~d~~~~~~~~-~~~~~~  111 (299)
T 3g5t_A           36 ERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDT---YKNVSFKISSSDDFKFLG-ADSVDK  111 (299)
T ss_dssp             CCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-C---CTTEEEEECCTTCCGGGC-TTTTTS
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCC---CCceEEEEcCHHhCCccc-cccccC
Confidence            678999999999988888886  34679999999999999999999886 22   256788877776532110 001112


Q ss_pred             CCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEE
Q 009871          412 EGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILC  458 (523)
Q Consensus       412 ~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~  458 (523)
                      ++||+|+++.++++. ....+++.+.++|         +|||.+++.
T Consensus       112 ~~fD~V~~~~~l~~~-~~~~~l~~~~~~L---------kpgG~l~i~  148 (299)
T 3g5t_A          112 QKIDMITAVECAHWF-DFEKFQRSAYANL---------RKDGTIAIW  148 (299)
T ss_dssp             SCEEEEEEESCGGGS-CHHHHHHHHHHHE---------EEEEEEEEE
T ss_pred             CCeeEEeHhhHHHHh-CHHHHHHHHHHhc---------CCCcEEEEE
Confidence            699999999999999 9999999999999         679998773

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=99.29  E-value=3.3e-11  Score=113.43  Aligned_cols=137  Identities=20%  Similarity=0.168  Sum_probs=93.7

Q ss_pred             hcCCCCCCCCeEEEECCCccHHHHHHHhc-CCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhh
Q 009871          328 ARNPTIVAGKKVLELGCGCGGICSMVAAG-SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAI  406 (523)
Q Consensus       328 ~~~~~~~~~~~VLElG~G~G~l~~~~a~~-~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~  406 (523)
                      .....+.++.+|||||||+|.++..++.. +..+|+++|+++.+++.+++|+..+      .++.+...|..+...   .
T Consensus        67 l~~~~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~------~~v~~~~~d~~~~~~---~  137 (230)
T 1fbn_A           67 LKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER------ENIIPILGDANKPQE---Y  137 (230)
T ss_dssp             CCCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC------TTEEEEECCTTCGGG---G
T ss_pred             ccccCCCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcC------CCeEEEECCCCCccc---c
Confidence            33444557889999999999988888887 4469999999999999999987654      345665555443110   0


Q ss_pred             hhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCCh--------hHHHHHHHHcCC
Q 009871          407 KEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDE--------PSMLSAATQCGF  478 (523)
Q Consensus       407 ~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~--------~~~~~~~~~~gf  478 (523)
                      .++. .+||+|+. ++ ..+.....+++.+.++|         +|||.++++...+....        ..-+..+++.||
T Consensus       138 ~~~~-~~~D~v~~-~~-~~~~~~~~~l~~~~~~L---------kpgG~l~i~~~~~~~~~~~~~~~~~~~~l~~l~~~Gf  205 (230)
T 1fbn_A          138 ANIV-EKVDVIYE-DV-AQPNQAEILIKNAKWFL---------KKGGYGMIAIKARSIDVTKDPKEIFKEQKEILEAGGF  205 (230)
T ss_dssp             TTTS-CCEEEEEE-CC-CSTTHHHHHHHHHHHHE---------EEEEEEEEEEEGGGTCSSSCHHHHHHHHHHHHHHHTE
T ss_pred             cccC-ccEEEEEE-ec-CChhHHHHHHHHHHHhC---------CCCcEEEEEEecCCCCCCCCHHHhhHHHHHHHHHCCC
Confidence            1222 68999993 22 22333477899999999         67999998743322111        122336788899


Q ss_pred             EEEEEcC
Q 009871          479 RLVDKWP  485 (523)
Q Consensus       479 ~~~~~~~  485 (523)
                      ++.+...
T Consensus       206 ~~~~~~~  212 (230)
T 1fbn_A          206 KIVDEVD  212 (230)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEc
Confidence            9887754

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=99.29  E-value=2.2e-11  Score=115.37  Aligned_cols=99  Identities=17%  Similarity=0.213  Sum_probs=76.5

Q ss_pred             CCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCc
Q 009871          335 AGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGF  414 (523)
Q Consensus       335 ~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~f  414 (523)
                      ++.+|||+|||+|.++..++..  .+|+++|+++.+++.+++++..++.     ++.+...|..+.       ++ +.+|
T Consensus        33 ~~~~vLdiG~G~G~~~~~l~~~--~~v~~vD~s~~~~~~a~~~~~~~~~-----~~~~~~~d~~~~-------~~-~~~f   97 (243)
T 3d2l_A           33 PGKRIADIGCGTGTATLLLADH--YEVTGVDLSEEMLEIAQEKAMETNR-----HVDFWVQDMREL-------EL-PEPV   97 (243)
T ss_dssp             TTCEEEEESCTTCHHHHHHTTT--SEEEEEESCHHHHHHHHHHHHHTTC-----CCEEEECCGGGC-------CC-SSCE
T ss_pred             CCCeEEEecCCCCHHHHHHhhC--CeEEEEECCHHHHHHHHHhhhhcCC-----ceEEEEcChhhc-------CC-CCCc
Confidence            5689999999999887777766  6899999999999999999887542     355555554332       12 3689


Q ss_pred             cEEEEc-cccCCC---CChHHHHHHHHHHhhccCCCCCCCCCcEEEE
Q 009871          415 EVILGT-DVSYIP---EAILPLFATAKELTASSNKSLREDQQPAFIL  457 (523)
Q Consensus       415 D~Ii~~-d~~y~~---~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l  457 (523)
                      |+|++. +++.+.   .....+++.+.++|         +|||.+++
T Consensus        98 D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L---------~pgG~l~~  135 (243)
T 3d2l_A           98 DAITILCDSLNYLQTEADVKQTFDSAARLL---------TDGGKLLF  135 (243)
T ss_dssp             EEEEECTTGGGGCCSHHHHHHHHHHHHHHE---------EEEEEEEE
T ss_pred             CEEEEeCCchhhcCCHHHHHHHHHHHHHhc---------CCCeEEEE
Confidence            999987 477665   56678889999999         56888876

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=99.29  E-value=3.8e-12  Score=118.82  Aligned_cols=120  Identities=12%  Similarity=0.171  Sum_probs=83.9

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC-CCcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT-ETRVSTFVCDLISDDLSRQISPSSIDIVTM  152 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~-~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~  152 (523)
                      .++.+|||||||+|.++..+++.+|+..|+|||+|+.|++.|+++.... ..++.++++|+.+. ++..+++++||.|++
T Consensus        33 ~~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~-l~~~~~~~~~d~v~~  111 (218)
T 3dxy_A           33 REAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEV-LHKMIPDNSLRMVQL  111 (218)
T ss_dssp             SCCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHH-HHHHSCTTCEEEEEE
T ss_pred             CCCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHH-HHHHcCCCChheEEE
Confidence            4678999999999999999999999999999999999999999876433 35799999998752 111256889999998


Q ss_pred             c---cccccce---------eeec-ceEEecCCeEEEeeC----HHHHHHHHHhC-CCcE
Q 009871          153 E---RLTGKDQ---------KISE-NFYVRGDGTRAFYFS----NDFLTSLFKEN-GFDV  194 (523)
Q Consensus       153 ~---~~~~~~~---------~~~~-~~~~~~~g~~~~~~~----~~~l~~ll~~~-Gf~~  194 (523)
                      .   .+.+...         .+.. ...++++|.+.+...    .+++.+.+... +|..
T Consensus       112 ~~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td~~~~~~~~~~~~~~~~~~~~  171 (218)
T 3dxy_A          112 FFPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATDWEPYAEHMLEVMSSIDGYKN  171 (218)
T ss_dssp             ESCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHHTSTTEEE
T ss_pred             eCCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHhCCCccc
Confidence            1   1111100         0111 125888888776443    34455556543 4543

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=99.29  E-value=4.8e-12  Score=118.68  Aligned_cols=117  Identities=7%  Similarity=0.048  Sum_probs=85.5

Q ss_pred             CCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCC--CcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871           75 GRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQISPSSIDIVTM  152 (523)
Q Consensus        75 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~V~~  152 (523)
                      ++.+|||||||+|.++..+++.+|..+|+|+|+++.+++.|+++...++  .++++.++|..+.    ..++.+||+|++
T Consensus        21 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~----~~~~~~~D~Ivi   96 (244)
T 3gnl_A           21 KNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAV----IEKKDAIDTIVI   96 (244)
T ss_dssp             SSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGG----CCGGGCCCEEEE
T ss_pred             CCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhc----cCccccccEEEE
Confidence            5689999999999999999999877789999999999999999875443  4699999999764    222336999886


Q ss_pred             --------ccccccceeeecceEEecCCeEEEe--eCHHHHHHHHHhCCCcEEEEEeE
Q 009871          153 --------ERLTGKDQKISENFYVRGDGTRAFY--FSNDFLTSLFKENGFDVEELGLC  200 (523)
Q Consensus       153 --------~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~l~~ll~~~Gf~~~~~~~~  200 (523)
                              .+++.....     .+++.+.++.-  ...+.+++.|.+.||.+++...+
T Consensus        97 agmGg~lI~~IL~~~~~-----~L~~~~~lIlq~~~~~~~lr~~L~~~Gf~i~~E~lv  149 (244)
T 3gnl_A           97 AGMGGTLIRTILEEGAA-----KLAGVTKLILQPNIAAWQLREWSEQNNWLITSEAIL  149 (244)
T ss_dssp             EEECHHHHHHHHHHTGG-----GGTTCCEEEEEESSCHHHHHHHHHHHTEEEEEEEEE
T ss_pred             eCCchHHHHHHHHHHHH-----HhCCCCEEEEEcCCChHHHHHHHHHCCCEEEEEEEE
Confidence                    222222211     12223333221  25788999999999998766544

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=99.29  E-value=7.5e-12  Score=116.22  Aligned_cols=116  Identities=9%  Similarity=0.122  Sum_probs=86.3

Q ss_pred             CCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCC--CcEEEEEeeccCCccCCCCCCC-ceeEEE
Q 009871           75 GRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQISPS-SIDIVT  151 (523)
Q Consensus        75 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~-~fD~V~  151 (523)
                      ++.+|||||||+|.++..+++.+|..+|+|+|+++.+++.|+++...++  .++++.++|..+     +++++ .||+|+
T Consensus        15 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~-----~l~~~~~~D~Iv   89 (225)
T 3kr9_A           15 QGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLA-----AFEETDQVSVIT   89 (225)
T ss_dssp             TTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGG-----GCCGGGCCCEEE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhh-----hcccCcCCCEEE
Confidence            5689999999999999999999888899999999999999999876443  479999999864     23333 699888


Q ss_pred             E--------ccccccceeeecceEEecCCeEEEe--eCHHHHHHHHHhCCCcEEEEEeE
Q 009871          152 M--------ERLTGKDQKISENFYVRGDGTRAFY--FSNDFLTSLFKENGFDVEELGLC  200 (523)
Q Consensus       152 ~--------~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~l~~ll~~~Gf~~~~~~~~  200 (523)
                      .        .+++.....     .++++|.++.-  ...+.+++.|.+.||.+++...+
T Consensus        90 iaG~Gg~~i~~Il~~~~~-----~L~~~~~lVlq~~~~~~~vr~~L~~~Gf~i~~e~lv  143 (225)
T 3kr9_A           90 IAGMGGRLIARILEEGLG-----KLANVERLILQPNNREDDLRIWLQDHGFQIVAESIL  143 (225)
T ss_dssp             EEEECHHHHHHHHHHTGG-----GCTTCCEEEEEESSCHHHHHHHHHHTTEEEEEEEEE
T ss_pred             EcCCChHHHHHHHHHHHH-----HhCCCCEEEEECCCCHHHHHHHHHHCCCEEEEEEEE
Confidence            6        122222211     23344444332  26788999999999998776544

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=99.29  E-value=1.2e-11  Score=118.44  Aligned_cols=134  Identities=12%  Similarity=0.040  Sum_probs=102.5

Q ss_pred             HhcCCCCCCCCeEEEECCCccHHHHHHHhc-C-CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcch
Q 009871          327 LARNPTIVAGKKVLELGCGCGGICSMVAAG-S-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIE  404 (523)
Q Consensus       327 l~~~~~~~~~~~VLElG~G~G~l~~~~a~~-~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~  404 (523)
                      +.......++.+|||+|||+|.++..++.. + ..+|+++|+++.+++.|++|+..++..   .++.+...|+.+.    
T Consensus        85 i~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~---~~v~~~~~d~~~~----  157 (255)
T 3mb5_A           85 IVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFD---DRVTIKLKDIYEG----  157 (255)
T ss_dssp             HHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCT---TTEEEECSCGGGC----
T ss_pred             HHHhhCCCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCC---CceEEEECchhhc----
Confidence            333334567889999999999998888887 5 569999999999999999999998764   4577776665432    


Q ss_pred             hhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhHHHHHHHHcC--CEEEE
Q 009871          405 AIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCG--FRLVD  482 (523)
Q Consensus       405 ~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~~~~~~~~g--f~~~~  482 (523)
                          ++..+||+|++.     ......+++.+.++|         +|+|.+++..... .....+.+.+++.|  |...+
T Consensus       158 ----~~~~~~D~v~~~-----~~~~~~~l~~~~~~L---------~~gG~l~~~~~~~-~~~~~~~~~l~~~g~~f~~~~  218 (255)
T 3mb5_A          158 ----IEEENVDHVILD-----LPQPERVVEHAAKAL---------KPGGFFVAYTPCS-NQVMRLHEKLREFKDYFMKPR  218 (255)
T ss_dssp             ----CCCCSEEEEEEC-----SSCGGGGHHHHHHHE---------EEEEEEEEEESSH-HHHHHHHHHHHHTGGGBSCCE
T ss_pred             ----cCCCCcCEEEEC-----CCCHHHHHHHHHHHc---------CCCCEEEEEECCH-HHHHHHHHHHHHcCCCccccE
Confidence                335689999984     345677899999999         6799988765432 23346778888999  98887


Q ss_pred             EcCC
Q 009871          483 KWPS  486 (523)
Q Consensus       483 ~~~~  486 (523)
                      +++.
T Consensus       219 ~~e~  222 (255)
T 3mb5_A          219 TINV  222 (255)
T ss_dssp             EECC
T ss_pred             EEEE
Confidence            7763

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=99.29  E-value=1.9e-11  Score=119.04  Aligned_cols=126  Identities=17%  Similarity=0.196  Sum_probs=94.6

Q ss_pred             CCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCc
Q 009871          335 AGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGF  414 (523)
Q Consensus       335 ~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~f  414 (523)
                      ++.+|||+|||+|.++..++..+. +|+++|+|+.+++.+++++..++.     ++.+...|..+..       . .++|
T Consensus       120 ~~~~vLD~GcG~G~~~~~l~~~g~-~v~~vD~s~~~~~~a~~~~~~~~~-----~~~~~~~d~~~~~-------~-~~~f  185 (286)
T 3m70_A          120 SPCKVLDLGCGQGRNSLYLSLLGY-DVTSWDHNENSIAFLNETKEKENL-----NISTALYDINAAN-------I-QENY  185 (286)
T ss_dssp             CSCEEEEESCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC-----CEEEEECCGGGCC-------C-CSCE
T ss_pred             CCCcEEEECCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHcCC-----ceEEEEecccccc-------c-cCCc
Confidence            678999999999998888888865 899999999999999999998764     4566655554321       1 5689


Q ss_pred             cEEEEccccCCC--CChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec------------CCChhHHHHHHHHcCCEE
Q 009871          415 EVILGTDVSYIP--EAILPLFATAKELTASSNKSLREDQQPAFILCHIFR------------QVDEPSMLSAATQCGFRL  480 (523)
Q Consensus       415 D~Ii~~d~~y~~--~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r------------~~~~~~~~~~~~~~gf~~  480 (523)
                      |+|+++.++++.  .....+++.+.++|         +|||.+++.....            ..+..++.+.+.  +|++
T Consensus       186 D~i~~~~~~~~~~~~~~~~~l~~~~~~L---------kpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~  254 (286)
T 3m70_A          186 DFIVSTVVFMFLNRERVPSIIKNMKEHT---------NVGGYNLIVAAMSTDDVPCPLPFSFTFAENELKEYYK--DWEF  254 (286)
T ss_dssp             EEEEECSSGGGSCGGGHHHHHHHHHHTE---------EEEEEEEEEEEBCCSSSCCSSCCSCCBCTTHHHHHTT--TSEE
T ss_pred             cEEEEccchhhCCHHHHHHHHHHHHHhc---------CCCcEEEEEEecCCCCCCCCCCccccCCHHHHHHHhc--CCEE
Confidence            999999999864  55779999999999         6799977655432            122334444443  3887


Q ss_pred             EEEcC
Q 009871          481 VDKWP  485 (523)
Q Consensus       481 ~~~~~  485 (523)
                      ....+
T Consensus       255 ~~~~~  259 (286)
T 3m70_A          255 LEYNE  259 (286)
T ss_dssp             EEEEC
T ss_pred             EEEEc
Confidence            76644

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=99.28  E-value=4.4e-12  Score=117.38  Aligned_cols=107  Identities=10%  Similarity=0.011  Sum_probs=82.3

Q ss_pred             CCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCC
Q 009871          334 VAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG  413 (523)
Q Consensus       334 ~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~  413 (523)
                      .++.+|||+|||+|.+...+++....+|+++|+|+.+++.+++++..++.     ++.+...|..+.       ++++++
T Consensus        22 ~~~~~vLDiGcG~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-----~~~~~~~d~~~~-------~~~~~~   89 (209)
T 2p8j_A           22 NLDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENNF-----KLNISKGDIRKL-------PFKDES   89 (209)
T ss_dssp             SSCSEEEEESCCSSSCTHHHHHHTTCEEEEEECCHHHHHHHHHHHHHHTC-----CCCEEECCTTSC-------CSCTTC
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCC-----ceEEEECchhhC-------CCCCCc
Confidence            36789999999999764444444445899999999999999999887552     344555554432       233568


Q ss_pred             ccEEEEccccCCC--CChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee
Q 009871          414 FEVILGTDVSYIP--EAILPLFATAKELTASSNKSLREDQQPAFILCHIF  461 (523)
Q Consensus       414 fD~Ii~~d~~y~~--~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~  461 (523)
                      ||+|++..++++.  +....+++.+.++|         +|||.+++....
T Consensus        90 fD~v~~~~~l~~~~~~~~~~~l~~~~~~L---------kpgG~l~~~~~~  130 (209)
T 2p8j_A           90 MSFVYSYGTIFHMRKNDVKEAIDEIKRVL---------KPGGLACINFLT  130 (209)
T ss_dssp             EEEEEECSCGGGSCHHHHHHHHHHHHHHE---------EEEEEEEEEEEE
T ss_pred             eeEEEEcChHHhCCHHHHHHHHHHHHHHc---------CCCcEEEEEEec
Confidence            9999999998886  67889999999999         679999887654

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=99.28  E-value=6.6e-12  Score=122.80  Aligned_cols=123  Identities=19%  Similarity=0.220  Sum_probs=78.4

Q ss_pred             CCCCeEEEECCCccccHH----HHHhhCCCCEE--EEEeCCHHHHHHHHhcccc--CCCcEEE--EEeeccCCc--cCCC
Q 009871           74 AGRKDVLEVGCGAGNTIF----PLIAAYPDVFV--YACDFSPRAVNLVMTHKDF--TETRVST--FVCDLISDD--LSRQ  141 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~----~l~~~~~~~~v--~gvD~S~~~l~~a~~~~~~--~~~~v~~--~~~d~~~~~--~~~~  141 (523)
                      .++.+|||||||+|.++.    .++.+++++.|  +|+|+|+.|++.|+++...  ...++++  .++++..+.  +..+
T Consensus        51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  130 (292)
T 2aot_A           51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEK  130 (292)
T ss_dssp             CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTT
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhccc
Confidence            456799999999997654    34445567754  9999999999999987542  2234554  444444220  0012


Q ss_pred             CCCCceeEEEE-----------------ccccccceeeecceEEecCC----------------eEEEeeCHHHHHHHHH
Q 009871          142 ISPSSIDIVTM-----------------ERLTGKDQKISENFYVRGDG----------------TRAFYFSNDFLTSLFK  188 (523)
Q Consensus       142 ~~~~~fD~V~~-----------------~~~~~~~~~~~~~~~~~~~g----------------~~~~~~~~~~l~~ll~  188 (523)
                      +++++||+|++                 .+++++++.+.-... .+++                ....+++.+++.++|+
T Consensus       131 ~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  209 (292)
T 2aot_A          131 KELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVV-SGSSGWDKLWKKYGSRFPQDDLCQYITSDDLTQMLD  209 (292)
T ss_dssp             TCCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEE-CTTSHHHHHHHHHGGGSCCCTTCCCCCHHHHHHHHH
T ss_pred             cCCCceeEEEEeeeeeecCCHHHHHHHHHHHcCCCcEEEEEEe-cCCccHHHHHHHHHHhccCCCcccCCCHHHHHHHHH
Confidence            56789999999                 344455555432110 0110                0123468899999999


Q ss_pred             hCCCcEEEE
Q 009871          189 ENGFDVEEL  197 (523)
Q Consensus       189 ~~Gf~~~~~  197 (523)
                      ++||.++..
T Consensus       210 ~aGf~~~~~  218 (292)
T 2aot_A          210 NLGLKYECY  218 (292)
T ss_dssp             HHTCCEEEE
T ss_pred             HCCCceEEE
Confidence            999987643

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=99.28  E-value=4.7e-12  Score=122.55  Aligned_cols=127  Identities=15%  Similarity=0.175  Sum_probs=89.3

Q ss_pred             hcCCCCCeEEEECCCccccHHHHHhh-CCCCEEEEEeCCHH------HHHHHHhccccCC--CcEEEEEee-ccCCccCC
Q 009871           71 FSGAGRKDVLEVGCGAGNTIFPLIAA-YPDVFVYACDFSPR------AVNLVMTHKDFTE--TRVSTFVCD-LISDDLSR  140 (523)
Q Consensus        71 ~~~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~v~gvD~S~~------~l~~a~~~~~~~~--~~v~~~~~d-~~~~~~~~  140 (523)
                      +...++.+|||||||+|.++..++++ .|+.+|+|+|+|+.      |++.|+++....+  .++++.++| .....+  
T Consensus        39 ~~~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--  116 (275)
T 3bkx_A           39 WQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSDDLG--  116 (275)
T ss_dssp             HTCCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTTTCCG--
T ss_pred             cCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhhhccC--
Confidence            34467889999999999999999998 46689999999997      9999998764332  579999998 332222  


Q ss_pred             CCCCCceeEEEE-----------------ccccccceeeecceEEec--------------------------CCeEEEe
Q 009871          141 QISPSSIDIVTM-----------------ERLTGKDQKISENFYVRG--------------------------DGTRAFY  177 (523)
Q Consensus       141 ~~~~~~fD~V~~-----------------~~~~~~~~~~~~~~~~~~--------------------------~g~~~~~  177 (523)
                      ++++++||+|++                 .++.++++.+.-.....+                          .+....+
T Consensus       117 ~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~l~~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (275)
T 3bkx_A          117 PIADQHFDRVVLAHSLWYFASANALALLFKNMAAVCDHVDVAEWSMQPTALDQIGHLQAAMIQGLLYAIAPSDVANIRTL  196 (275)
T ss_dssp             GGTTCCCSEEEEESCGGGSSCHHHHHHHHHHHTTTCSEEEEEEECSSCSSGGGHHHHHHHHHHHHHHHHSCCTTCSCCCC
T ss_pred             CCCCCCEEEEEEccchhhCCCHHHHHHHHHHHhCCCCEEEEEEecCCCCchhhhhHHHHHHHHHHHhhcccccccccccc
Confidence            567889999999                 222232433321101000                          1112235


Q ss_pred             eCHHHHHHHHHhCCCcEEEEEe
Q 009871          178 FSNDFLTSLFKENGFDVEELGL  199 (523)
Q Consensus       178 ~~~~~l~~ll~~~Gf~~~~~~~  199 (523)
                      ++.+++.++++++||+++.+..
T Consensus       197 ~s~~~l~~~l~~aGf~~~~~~~  218 (275)
T 3bkx_A          197 ITPDTLAQIAHDNTWTYTAGTI  218 (275)
T ss_dssp             CCHHHHHHHHHHHTCEEEECCC
T ss_pred             CCHHHHHHHHHHCCCeeEEEEE
Confidence            6899999999999999876643

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=99.28  E-value=7.1e-11  Score=120.54  Aligned_cols=135  Identities=20%  Similarity=0.157  Sum_probs=98.2

Q ss_pred             CCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCC-CCCCCceEEEeeecCCCCcchhhhhhcCCC
Q 009871          335 AGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLK-PPFLAKLITKRLEWGNRDHIEAIKEENNEG  413 (523)
Q Consensus       335 ~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~-~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~  413 (523)
                      ++.+|||+|||+|.++..++..++.+|+++|+++.+++.+++|+..|++ .   .++.+...|..+.  ...+ .....+
T Consensus       220 ~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n~~~ngl~~---~~v~~~~~D~~~~--~~~~-~~~~~~  293 (396)
T 3c0k_A          220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDL---SKAEFVRDDVFKL--LRTY-RDRGEK  293 (396)
T ss_dssp             TTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCG---GGEEEEESCHHHH--HHHH-HHTTCC
T ss_pred             CCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCc---cceEEEECCHHHH--HHHH-HhcCCC
Confidence            6789999999999999999888878999999999999999999999987 4   2566665544321  1110 011458


Q ss_pred             ccEEEEccccCCC---------CChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhHHH----HHHHHcCCEE
Q 009871          414 FEVILGTDVSYIP---------EAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSML----SAATQCGFRL  480 (523)
Q Consensus       414 fD~Ii~~d~~y~~---------~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~~----~~~~~~gf~~  480 (523)
                      ||+|++....+..         .....++..+.++|         +|+|.++++........+.+.    +.+.+.|+.+
T Consensus       294 fD~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~L---------kpgG~l~~~~~~~~~~~~~~~~~i~~~~~~~g~~~  364 (396)
T 3c0k_A          294 FDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLL---------NEGGILLTFSCSGLMTSDLFQKIIADAAIDAGRDV  364 (396)
T ss_dssp             EEEEEECCSSTTTCSSSSSCCCTHHHHHHHHHHHTE---------EEEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCE
T ss_pred             CCEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhc---------CCCcEEEEEeCCCcCCHHHHHHHHHHHHHHcCCeE
Confidence            9999986443322         45678888888899         679999998877666644333    3556778666


Q ss_pred             EEEc
Q 009871          481 VDKW  484 (523)
Q Consensus       481 ~~~~  484 (523)
                      ..+.
T Consensus       365 ~~i~  368 (396)
T 3c0k_A          365 QFIE  368 (396)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            5543

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=99.28  E-value=1.8e-11  Score=114.89  Aligned_cols=119  Identities=18%  Similarity=0.206  Sum_probs=92.8

Q ss_pred             CCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhc-CC
Q 009871          334 VAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEEN-NE  412 (523)
Q Consensus       334 ~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~-~~  412 (523)
                      .++.+|||+|||+|.++..++..+ .+|+++|+++.+++.+++|  .       .++.+...|+.+..      ++. ++
T Consensus        47 ~~~~~vLDiGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~--~-------~~~~~~~~d~~~~~------~~~~~~  110 (226)
T 3m33_A           47 TPQTRVLEAGCGHGPDAARFGPQA-ARWAAYDFSPELLKLARAN--A-------PHADVYEWNGKGEL------PAGLGA  110 (226)
T ss_dssp             CTTCEEEEESCTTSHHHHHHGGGS-SEEEEEESCHHHHHHHHHH--C-------TTSEEEECCSCSSC------CTTCCC
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHcC-CEEEEEECCHHHHHHHHHh--C-------CCceEEEcchhhcc------CCcCCC
Confidence            367899999999998888888875 5899999999999999987  1       34677777764321      233 56


Q ss_pred             CccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhHHHHHHHHcCCEEEEEcC
Q 009871          413 GFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLVDKWP  485 (523)
Q Consensus       413 ~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~~~~~~~~gf~~~~~~~  485 (523)
                      +||+|+++      .....+++.+.++|         +|||.++.  .........+.+.+.+.||....+..
T Consensus       111 ~fD~v~~~------~~~~~~l~~~~~~L---------kpgG~l~~--~~~~~~~~~~~~~l~~~Gf~~~~~~~  166 (226)
T 3m33_A          111 PFGLIVSR------RGPTSVILRLPELA---------APDAHFLY--VGPRLNVPEVPERLAAVGWDIVAEDH  166 (226)
T ss_dssp             CEEEEEEE------SCCSGGGGGHHHHE---------EEEEEEEE--EESSSCCTHHHHHHHHTTCEEEEEEE
T ss_pred             CEEEEEeC------CCHHHHHHHHHHHc---------CCCcEEEE--eCCcCCHHHHHHHHHHCCCeEEEEEe
Confidence            89999998      46778899999999         67999883  33344556788999999999877643

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=99.28  E-value=1.3e-11  Score=119.60  Aligned_cols=133  Identities=10%  Similarity=0.122  Sum_probs=99.5

Q ss_pred             HHhcCCCCCCCCeEEEECCCccHHHHHHHhc-C-CCEEEEEcCChHHHHHHHHHHHhc-CCCCCCCceEEEeeecCCCCc
Q 009871          326 VLARNPTIVAGKKVLELGCGCGGICSMVAAG-S-ADLVVATDGDSIALDLLAQNVTAN-LKPPFLAKLITKRLEWGNRDH  402 (523)
Q Consensus       326 ~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~-~-~~~V~~~D~~~~~l~~~~~n~~~n-~~~~~~~~v~~~~ldw~~~~~  402 (523)
                      ++.......++.+|||+|||+|.++..++.. + ..+|+++|+++.+++.+++|+..+ +.    .++.+...|+.+.  
T Consensus       101 ~~~~~~~~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~----~~v~~~~~d~~~~--  174 (275)
T 1yb2_A          101 YIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDI----GNVRTSRSDIADF--  174 (275)
T ss_dssp             -----CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCC----TTEEEECSCTTTC--
T ss_pred             HHHHHcCCCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCC----CcEEEEECchhcc--
Confidence            4444445567889999999999988888876 3 469999999999999999999887 63    4577766665542  


Q ss_pred             chhhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhHHHHHHHHcCCEEEE
Q 009871          403 IEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLVD  482 (523)
Q Consensus       403 ~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~~~~~~~~gf~~~~  482 (523)
                            +++++||+|++     +......+++.+.++|         +|||.+++...... ....+.+.+++.||...+
T Consensus       175 ------~~~~~fD~Vi~-----~~~~~~~~l~~~~~~L---------kpgG~l~i~~~~~~-~~~~~~~~l~~~Gf~~~~  233 (275)
T 1yb2_A          175 ------ISDQMYDAVIA-----DIPDPWNHVQKIASMM---------KPGSVATFYLPNFD-QSEKTVLSLSASGMHHLE  233 (275)
T ss_dssp             ------CCSCCEEEEEE-----CCSCGGGSHHHHHHTE---------EEEEEEEEEESSHH-HHHHHHHHSGGGTEEEEE
T ss_pred             ------CcCCCccEEEE-----cCcCHHHHHHHHHHHc---------CCCCEEEEEeCCHH-HHHHHHHHHHHCCCeEEE
Confidence                  23468999998     3345678999999999         67999988775421 234567777889999888


Q ss_pred             EcC
Q 009871          483 KWP  485 (523)
Q Consensus       483 ~~~  485 (523)
                      ++.
T Consensus       234 ~~~  236 (275)
T 1yb2_A          234 TVE  236 (275)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            765

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=99.28  E-value=3.5e-11  Score=114.31  Aligned_cols=124  Identities=15%  Similarity=0.056  Sum_probs=91.3

Q ss_pred             cchhHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEee
Q 009871          316 LWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRL  395 (523)
Q Consensus       316 ~W~~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l  395 (523)
                      .|..+......+..+  ..++.+|||||||+|.++..++..+. +|+++|+|+.+++.+++++..       .++.+...
T Consensus        39 ~~~~~~~~~~~~~~~--~~~~~~vLD~GcG~G~~~~~la~~~~-~v~gvD~s~~~~~~a~~~~~~-------~~~~~~~~  108 (245)
T 3ggd_A           39 VERAVVVDLPRFELL--FNPELPLIDFACGNGTQTKFLSQFFP-RVIGLDVSKSALEIAAKENTA-------ANISYRLL  108 (245)
T ss_dssp             GGGTHHHHHHHHTTT--SCTTSCEEEETCTTSHHHHHHHHHSS-CEEEEESCHHHHHHHHHHSCC-------TTEEEEEC
T ss_pred             hHHHHHHHHHHHhhc--cCCCCeEEEEcCCCCHHHHHHHHhCC-CEEEEECCHHHHHHHHHhCcc-------cCceEEEC
Confidence            344444444444433  45778999999999999988888876 799999999999999987621       35677766


Q ss_pred             ecCCCCcchhhhhhc-CCCccEEEEccccCCCC--ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee
Q 009871          396 EWGNRDHIEAIKEEN-NEGFEVILGTDVSYIPE--AILPLFATAKELTASSNKSLREDQQPAFILCHIF  461 (523)
Q Consensus       396 dw~~~~~~~~~~~~~-~~~fD~Ii~~d~~y~~~--~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~  461 (523)
                      |..+.....   .+. ...||+|+++.++++..  ....+++.+.++|         +|||.++++...
T Consensus       109 d~~~~~~~~---~~~~~~~~d~v~~~~~~~~~~~~~~~~~l~~~~~~L---------kpgG~l~i~~~~  165 (245)
T 3ggd_A          109 DGLVPEQAA---QIHSEIGDANIYMRTGFHHIPVEKRELLGQSLRILL---------GKQGAMYLIELG  165 (245)
T ss_dssp             CTTCHHHHH---HHHHHHCSCEEEEESSSTTSCGGGHHHHHHHHHHHH---------TTTCEEEEEEEC
T ss_pred             ccccccccc---ccccccCccEEEEcchhhcCCHHHHHHHHHHHHHHc---------CCCCEEEEEeCC
Confidence            665432111   111 12599999999999877  7899999999999         779998877653

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=99.28  E-value=1.4e-11  Score=118.31  Aligned_cols=128  Identities=10%  Similarity=0.141  Sum_probs=93.3

Q ss_pred             hcCC-CCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCC--CcEEEEEeeccCCccCCCCCCCce
Q 009871           71 FSGA-GRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQISPSSI  147 (523)
Q Consensus        71 ~~~~-~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~f  147 (523)
                      +... ++.+|||+|||+|..+..++++++. +|+|+|+++.|++.|+++....+  .+++++++|+.+.  +..+++++|
T Consensus        44 ~~~~~~~~~vLDlG~G~G~~~~~la~~~~~-~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~--~~~~~~~~f  120 (259)
T 3lpm_A           44 SYLPIRKGKIIDLCSGNGIIPLLLSTRTKA-KIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKI--TDLIPKERA  120 (259)
T ss_dssp             CCCCSSCCEEEETTCTTTHHHHHHHTTCCC-EEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGG--GGTSCTTCE
T ss_pred             hcCCCCCCEEEEcCCchhHHHHHHHHhcCC-cEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHh--hhhhccCCc
Confidence            3445 6889999999999999999998654 89999999999999999875433  4699999999865  222457899


Q ss_pred             eEEEE-cccccc---ce-------------------ee-ec-ceEEecCCeEEEee---CHHHHHHHHHhCCCcEEEEEe
Q 009871          148 DIVTM-ERLTGK---DQ-------------------KI-SE-NFYVRGDGTRAFYF---SNDFLTSLFKENGFDVEELGL  199 (523)
Q Consensus       148 D~V~~-~~~~~~---~~-------------------~~-~~-~~~~~~~g~~~~~~---~~~~l~~ll~~~Gf~~~~~~~  199 (523)
                      |+|++ ..+...   +.                   .+ .. ...++++|.+++.+   ...++...+.+.||....+..
T Consensus       121 D~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~  200 (259)
T 3lpm_A          121 DIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHRPERLLDIIDIMRKYRLEPKRIQF  200 (259)
T ss_dssp             EEEEECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEECTTTHHHHHHHHHHTTEEEEEEEE
T ss_pred             cEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEcHHHHHHHHHHHHHCCCceEEEEE
Confidence            99999 111111   00                   00 00 12578889887754   567788889999999877655


Q ss_pred             Ee
Q 009871          200 CC  201 (523)
Q Consensus       200 ~~  201 (523)
                      +.
T Consensus       201 v~  202 (259)
T 3lpm_A          201 VH  202 (259)
T ss_dssp             EE
T ss_pred             ee
Confidence            43

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=99.27  E-value=2.9e-11  Score=116.22  Aligned_cols=127  Identities=12%  Similarity=0.121  Sum_probs=93.9

Q ss_pred             CCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCC
Q 009871          334 VAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG  413 (523)
Q Consensus       334 ~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~  413 (523)
                      .+|.+|||+|||+|.+++.+|+.++.+|+++|+||.+++.+++|++.|++.   +++.+...|-.+.        .....
T Consensus       124 ~~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~N~~~N~v~---~~v~~~~~D~~~~--------~~~~~  192 (278)
T 3k6r_A          124 KPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVE---DRMSAYNMDNRDF--------PGENI  192 (278)
T ss_dssp             CTTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCT---TTEEEECSCTTTC--------CCCSC
T ss_pred             CCCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCCC---CcEEEEeCcHHHh--------ccccC
Confidence            368899999999999999999988889999999999999999999999986   5677766554432        12458


Q ss_pred             ccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecC---C--ChhHHHHHHHHcCCEEEEEc
Q 009871          414 FEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ---V--DEPSMLSAATQCGFRLVDKW  484 (523)
Q Consensus       414 fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~---~--~~~~~~~~~~~~gf~~~~~~  484 (523)
                      ||.|+.+...+    ...++..+.++|         ++||.+.+-.....   .  ..+.+.+.+++.|+++..+.
T Consensus       193 ~D~Vi~~~p~~----~~~~l~~a~~~l---------k~gG~ih~~~~~~e~~~~~~~~e~i~~~~~~~g~~v~~~~  255 (278)
T 3k6r_A          193 ADRILMGYVVR----THEFIPKALSIA---------KDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDVEKLN  255 (278)
T ss_dssp             EEEEEECCCSS----GGGGHHHHHHHE---------EEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEEEEEE
T ss_pred             CCEEEECCCCc----HHHHHHHHHHHc---------CCCCEEEEEeeecccccchhHHHHHHHHHHHcCCcEEEEE
Confidence            99999875433    345667777888         56887754322211   1  12345566788999886553

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=99.27  E-value=3.9e-12  Score=124.36  Aligned_cols=103  Identities=18%  Similarity=0.272  Sum_probs=74.9

Q ss_pred             HhhHHHHHHHHhcccccccchhhhHHHHhhhhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhcc
Q 009871           40 EAKKYWDLFYKRHQDRFFKDRHYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHK  119 (523)
Q Consensus        40 ~~~~~Wd~~y~~~~~~f~~~~~~l~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~  119 (523)
                      ...++|+.++.....++..-+.++    ...+...++.+|||||||+|..+..+++.  +.+|+|+|+|+.|++.|+++.
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~l----~~~l~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~   99 (293)
T 3thr_A           26 EAARVWQLYIGDTRSRTAEYKAWL----LGLLRQHGCHRVLDVACGTGVDSIMLVEE--GFSVTSVDASDKMLKYALKER   99 (293)
T ss_dssp             HHHHHHHHHHTCCSCBCHHHHHHH----HHHHHHTTCCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHhcCcchHHHHHHHH----HHHhcccCCCEEEEecCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHhh
Confidence            445789888855433332222233    33333356789999999999999999998  458999999999999998864


Q ss_pred             cc-----CCCcEEEEEeeccCCccCCC---CCCCceeEEEE
Q 009871          120 DF-----TETRVSTFVCDLISDDLSRQ---ISPSSIDIVTM  152 (523)
Q Consensus       120 ~~-----~~~~v~~~~~d~~~~~~~~~---~~~~~fD~V~~  152 (523)
                      ..     ...++.+.++|+..+    +   +++++||+|+|
T Consensus       100 ~~~~~~~~~~~~~~~~~d~~~~----~~~~~~~~~fD~V~~  136 (293)
T 3thr_A          100 WNRRKEPAFDKWVIEEANWLTL----DKDVPAGDGFDAVIC  136 (293)
T ss_dssp             HHTTTSHHHHTCEEEECCGGGH----HHHSCCTTCEEEEEE
T ss_pred             hhcccccccceeeEeecChhhC----ccccccCCCeEEEEE
Confidence            21     124678899998865    4   56789999997

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=99.27  E-value=3.2e-12  Score=114.27  Aligned_cols=113  Identities=21%  Similarity=0.215  Sum_probs=81.3

Q ss_pred             cCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEE
Q 009871           72 SGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVT  151 (523)
Q Consensus        72 ~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~  151 (523)
                      ...++.+|||+|||+|..+..+++.+  .+|+|+|+|+.|++.|+++    ..++++.++|   .    ++++++||+|+
T Consensus        14 ~~~~~~~vLDiG~G~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~----~~~v~~~~~d---~----~~~~~~~D~v~   80 (170)
T 3i9f_A           14 FEGKKGVIVDYGCGNGFYCKYLLEFA--TKLYCIDINVIALKEVKEK----FDSVITLSDP---K----EIPDNSVDFIL   80 (170)
T ss_dssp             HSSCCEEEEEETCTTCTTHHHHHTTE--EEEEEECSCHHHHHHHHHH----CTTSEEESSG---G----GSCTTCEEEEE
T ss_pred             CcCCCCeEEEECCCCCHHHHHHHhhc--CeEEEEeCCHHHHHHHHHh----CCCcEEEeCC---C----CCCCCceEEEE
Confidence            34577899999999999999999886  3799999999999999987    2578899888   3    56788999999


Q ss_pred             Eccccccc---e-eeec-ceEEecCCeEEE----------------eeCHHHHHHHHHhCCCcEEEEEe
Q 009871          152 MERLTGKD---Q-KISE-NFYVRGDGTRAF----------------YFSNDFLTSLFKENGFDVEELGL  199 (523)
Q Consensus       152 ~~~~~~~~---~-~~~~-~~~~~~~g~~~~----------------~~~~~~l~~ll~~~Gf~~~~~~~  199 (523)
                      +...+...   . .+.. ...++++|.+++                .++.+++.++++  ||++++...
T Consensus        81 ~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--Gf~~~~~~~  147 (170)
T 3i9f_A           81 FANSFHDMDDKQHVISEVKRILKDDGRVIIIDWRKENTGIGPPLSIRMDEKDYMGWFS--NFVVEKRFN  147 (170)
T ss_dssp             EESCSTTCSCHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSSCGGGCCCHHHHHHHTT--TEEEEEEEC
T ss_pred             EccchhcccCHHHHHHHHHHhcCCCCEEEEEEcCccccccCchHhhhcCHHHHHHHHh--CcEEEEccC
Confidence            91110000   0 0000 013445554433                358899999998  999877643

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=99.27  E-value=7.6e-12  Score=116.47  Aligned_cols=75  Identities=20%  Similarity=0.274  Sum_probs=64.1

Q ss_pred             hhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeE
Q 009871           70 YFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDI  149 (523)
Q Consensus        70 ~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~  149 (523)
                      .+...++.+|||||||+|.++..+++.+  .+|+|+|+|+.|++.|+++.... .+++++++|+.+.    + ++++||+
T Consensus        46 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~~-~~~~~~~~d~~~~----~-~~~~fD~  117 (216)
T 3ofk_A           46 SLSSGAVSNGLEIGCAAGAFTEKLAPHC--KRLTVIDVMPRAIGRACQRTKRW-SHISWAATDILQF----S-TAELFDL  117 (216)
T ss_dssp             HTTTSSEEEEEEECCTTSHHHHHHGGGE--EEEEEEESCHHHHHHHHHHTTTC-SSEEEEECCTTTC----C-CSCCEEE
T ss_pred             HcccCCCCcEEEEcCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHhcccC-CCeEEEEcchhhC----C-CCCCccE
Confidence            4444667899999999999999999884  57999999999999999986543 4799999999876    3 5789999


Q ss_pred             EEE
Q 009871          150 VTM  152 (523)
Q Consensus       150 V~~  152 (523)
                      |++
T Consensus       118 v~~  120 (216)
T 3ofk_A          118 IVV  120 (216)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            999

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=99.27  E-value=3.4e-12  Score=125.32  Aligned_cols=75  Identities=21%  Similarity=0.297  Sum_probs=65.6

Q ss_pred             CCCCeEEEECCCccccHHHHHhhC-CCCEEEEEeCCHHHHHHHHhccccC---CCcEEEEEeeccCCccCCCCCC-----
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAY-PDVFVYACDFSPRAVNLVMTHKDFT---ETRVSTFVCDLISDDLSRQISP-----  144 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~-~~~~v~gvD~S~~~l~~a~~~~~~~---~~~v~~~~~d~~~~~~~~~~~~-----  144 (523)
                      .++.+|||||||+|..+..+++.+ ++.+|+|+|+|+.|++.|+++....   ..+++++++|+.++    ++++     
T Consensus        35 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~----~~~~~~~~~  110 (299)
T 3g5t_A           35 GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDF----KFLGADSVD  110 (299)
T ss_dssp             SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCC----GGGCTTTTT
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhC----Ccccccccc
Confidence            478899999999999999999875 7889999999999999999976543   57899999999987    4444     


Q ss_pred             -CceeEEEE
Q 009871          145 -SSIDIVTM  152 (523)
Q Consensus       145 -~~fD~V~~  152 (523)
                       ++||+|++
T Consensus       111 ~~~fD~V~~  119 (299)
T 3g5t_A          111 KQKIDMITA  119 (299)
T ss_dssp             SSCEEEEEE
T ss_pred             CCCeeEEeH
Confidence             89999999

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=99.27  E-value=1.4e-11  Score=120.84  Aligned_cols=78  Identities=13%  Similarity=0.148  Sum_probs=58.6

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCC-------cEEEEEeeccCC----ccCCCC
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTET-------RVSTFVCDLISD----DLSRQI  142 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~-------~v~~~~~d~~~~----~~~~~~  142 (523)
                      +++.+|||||||+|..+..+++.. ..+|+|+|+|+.||+.|+++......       +++|.+.|+...    +++.++
T Consensus        47 ~~~~~VLDlGCG~G~~l~~~~~~~-~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~  125 (302)
T 2vdw_A           47 SNKRKVLAIDFGNGADLEKYFYGE-IALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVF  125 (302)
T ss_dssp             CSCCEEEETTCTTTTTHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTC
T ss_pred             CCCCeEEEEecCCcHhHHHHHhcC-CCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhccc
Confidence            357899999999999877766653 46899999999999999997643222       367888888432    122245


Q ss_pred             CCCceeEEEE
Q 009871          143 SPSSIDIVTM  152 (523)
Q Consensus       143 ~~~~fD~V~~  152 (523)
                      ++++||+|+|
T Consensus       126 ~~~~FD~V~~  135 (302)
T 2vdw_A          126 YFGKFNIIDW  135 (302)
T ss_dssp             CSSCEEEEEE
T ss_pred             cCCCeeEEEE
Confidence            6789999998

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=99.27  E-value=3.2e-11  Score=115.00  Aligned_cols=113  Identities=14%  Similarity=0.031  Sum_probs=82.7

Q ss_pred             HHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCc-c
Q 009871          325 AVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDH-I  403 (523)
Q Consensus       325 ~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~-~  403 (523)
                      +.+.......++.+|||||||+|.++..++.++ .+|+++|+|+.|++.+++|+..+       .   ...+|.+... .
T Consensus        35 ~~il~~l~l~~g~~VLDlGcGtG~~a~~La~~g-~~V~gvD~S~~ml~~Ar~~~~~~-------~---v~~~~~~~~~~~  103 (261)
T 3iv6_A           35 ENDIFLENIVPGSTVAVIGASTRFLIEKALERG-ASVTVFDFSQRMCDDLAEALADR-------C---VTIDLLDITAEI  103 (261)
T ss_dssp             HHHHHTTTCCTTCEEEEECTTCHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHTSSS-------C---CEEEECCTTSCC
T ss_pred             HHHHHhcCCCCcCEEEEEeCcchHHHHHHHhcC-CEEEEEECCHHHHHHHHHHHHhc-------c---ceeeeeeccccc
Confidence            444444455688999999999999888888876 48999999999999999987654       1   2234443321 0


Q ss_pred             hhhhhhcCCCccEEEEccccCC--CCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee
Q 009871          404 EAIKEENNEGFEVILGTDVSYI--PEAILPLFATAKELTASSNKSLREDQQPAFILCHIF  461 (523)
Q Consensus       404 ~~~~~~~~~~fD~Ii~~d~~y~--~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~  461 (523)
                      .   ....++||+|+++.++++  .+....+++.+.++|          |||.++++...
T Consensus       104 ~---~~~~~~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL----------PGG~l~lS~~~  150 (261)
T 3iv6_A          104 P---KELAGHFDFVLNDRLINRFTTEEARRACLGMLSLV----------GSGTVRASVKL  150 (261)
T ss_dssp             C---GGGTTCCSEEEEESCGGGSCHHHHHHHHHHHHHHH----------TTSEEEEEEEB
T ss_pred             c---cccCCCccEEEEhhhhHhCCHHHHHHHHHHHHHhC----------cCcEEEEEecc
Confidence            0   011468999999988865  345677888888888          58999988765

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=99.27  E-value=1e-10  Score=107.97  Aligned_cols=126  Identities=17%  Similarity=0.142  Sum_probs=89.9

Q ss_pred             CCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCC
Q 009871          333 IVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNE  412 (523)
Q Consensus       333 ~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~  412 (523)
                      ..++.+|||+|||+|.++..++..+..+|+++|+++.+++.+++|+..++.     ++.+...|+.+         + +.
T Consensus        47 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-----~~~~~~~d~~~---------~-~~  111 (207)
T 1wy7_A           47 DIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKG-----KFKVFIGDVSE---------F-NS  111 (207)
T ss_dssp             SSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTT-----SEEEEESCGGG---------C-CC
T ss_pred             CCCcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCC-----CEEEEECchHH---------c-CC
Confidence            347889999999999998888888777899999999999999999988764     35555544432         1 24


Q ss_pred             CccEEEEccccCCC--CChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhHHHHHHHHcCCEEEEEcC
Q 009871          413 GFEVILGTDVSYIP--EAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLVDKWP  485 (523)
Q Consensus       413 ~fD~Ii~~d~~y~~--~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~~~~~~~~gf~~~~~~~  485 (523)
                      +||+|+++...+..  .....+++.+.+++           ++.++++... ......+.+.+.+.||++..+..
T Consensus       112 ~~D~v~~~~p~~~~~~~~~~~~l~~~~~~l-----------~~~~~~~~~~-~~~~~~~~~~l~~~g~~~~~~~~  174 (207)
T 1wy7_A          112 RVDIVIMNPPFGSQRKHADRPFLLKAFEIS-----------DVVYSIHLAK-PEVRRFIEKFSWEHGFVVTHRLT  174 (207)
T ss_dssp             CCSEEEECCCCSSSSTTTTHHHHHHHHHHC-----------SEEEEEEECC-HHHHHHHHHHHHHTTEEEEEEEE
T ss_pred             CCCEEEEcCCCccccCCchHHHHHHHHHhc-----------CcEEEEEeCC-cCCHHHHHHHHHHCCCeEEEEEE
Confidence            89999997665443  34456677777666           5555554211 22234456777889999877644

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=99.27  E-value=1.2e-12  Score=121.41  Aligned_cols=144  Identities=16%  Similarity=0.057  Sum_probs=80.4

Q ss_pred             HHHHHHHhcC-CCCCCCCeEEEECCCccHHHHHHHhcCC-CEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecC
Q 009871          321 HLMAAVLARN-PTIVAGKKVLELGCGCGGICSMVAAGSA-DLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWG  398 (523)
Q Consensus       321 ~~la~~l~~~-~~~~~~~~VLElG~G~G~l~~~~a~~~~-~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~  398 (523)
                      ..+.+++... ....++.+|||+|||+|.++..++..++ .+|+++|+++.+++.+++|+..++.     ++.+...|+.
T Consensus        15 ~~~~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-----~~~~~~~d~~   89 (215)
T 4dzr_A           15 EVLVEEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGA-----VVDWAAADGI   89 (215)
T ss_dssp             HHHHHHHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC------------------------CCHHHHH
T ss_pred             HHHHHHHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCC-----ceEEEEcchH
Confidence            3344444432 2224778999999999998888888864 4899999999999999999887654     2333333332


Q ss_pred             CCCcchhhhh--hcCCCccEEEEccccCCCCCh--------------------------HHHHHHHHHHhhccCCCCCCC
Q 009871          399 NRDHIEAIKE--ENNEGFEVILGTDVSYIPEAI--------------------------LPLFATAKELTASSNKSLRED  450 (523)
Q Consensus       399 ~~~~~~~~~~--~~~~~fD~Ii~~d~~y~~~~~--------------------------~~l~~~l~~ll~~~~~~~~~~  450 (523)
                      +     .+..  ...++||+|+++...+.....                          ..+++.+.++|         +
T Consensus        90 ~-----~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L---------k  155 (215)
T 4dzr_A           90 E-----WLIERAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVL---------A  155 (215)
T ss_dssp             H-----HHHHHHHTTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGB---------C
T ss_pred             h-----hhhhhhhccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHh---------c
Confidence            2     1111  123799999997665443322                          56677777788         6


Q ss_pred             CCcE-EEEEEeecCCChhHHHHHHH--HcCCEEEEEcC
Q 009871          451 QQPA-FILCHIFRQVDEPSMLSAAT--QCGFRLVDKWP  485 (523)
Q Consensus       451 ~~g~-~~l~~~~r~~~~~~~~~~~~--~~gf~~~~~~~  485 (523)
                      |||. +++...  ......+.+.++  +.||....++.
T Consensus       156 pgG~l~~~~~~--~~~~~~~~~~l~~~~~gf~~~~~~~  191 (215)
T 4dzr_A          156 RGRAGVFLEVG--HNQADEVARLFAPWRERGFRVRKVK  191 (215)
T ss_dssp             SSSEEEEEECT--TSCHHHHHHHTGGGGGGTEECCEEE
T ss_pred             CCCeEEEEEEC--CccHHHHHHHHHHhhcCCceEEEEE
Confidence            7999 555433  334556778888  89998766655

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=99.26  E-value=1.2e-11  Score=121.48  Aligned_cols=75  Identities=19%  Similarity=0.176  Sum_probs=63.3

Q ss_pred             hhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC--CCcEEEEEeeccCCccCCCCCCCce
Q 009871           70 YFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISDDLSRQISPSSI  147 (523)
Q Consensus        70 ~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~~~~~~~~~~f  147 (523)
                      .+...++.+|||||||+|.++..+++.++ ++|+|+|+|+.|++.|+++....  ..++++.++|+.++       +++|
T Consensus        67 ~~~~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-------~~~f  138 (302)
T 3hem_A           67 KLNLEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF-------DEPV  138 (302)
T ss_dssp             TTCCCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC-------CCCC
T ss_pred             HcCCCCcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc-------CCCc
Confidence            34446788999999999999999999864 78999999999999999976433  24799999999743       6789


Q ss_pred             eEEEE
Q 009871          148 DIVTM  152 (523)
Q Consensus       148 D~V~~  152 (523)
                      |+|++
T Consensus       139 D~v~~  143 (302)
T 3hem_A          139 DRIVS  143 (302)
T ss_dssp             SEEEE
T ss_pred             cEEEE
Confidence            99999

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=99.26  E-value=2.3e-11  Score=118.59  Aligned_cols=75  Identities=20%  Similarity=0.247  Sum_probs=62.0

Q ss_pred             hhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC--CCcEEEEEeeccCCccCCCCCCCce
Q 009871           70 YFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISDDLSRQISPSSI  147 (523)
Q Consensus        70 ~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~~~~~~~~~~f  147 (523)
                      .+...++.+|||||||+|..+..+++.. +++|+|+|+|+.|++.|+++....  ..++++.++|+.++    +   ++|
T Consensus        59 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~----~---~~f  130 (287)
T 1kpg_A           59 KLGLQPGMTLLDVGCGWGATMMRAVEKY-DVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQF----D---EPV  130 (287)
T ss_dssp             TTTCCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGC----C---CCC
T ss_pred             HcCCCCcCEEEEECCcccHHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhC----C---CCe
Confidence            3444678899999999999999999664 458999999999999999876432  25799999999754    2   789


Q ss_pred             eEEEE
Q 009871          148 DIVTM  152 (523)
Q Consensus       148 D~V~~  152 (523)
                      |+|++
T Consensus       131 D~v~~  135 (287)
T 1kpg_A          131 DRIVS  135 (287)
T ss_dssp             SEEEE
T ss_pred             eEEEE
Confidence            99999

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=99.26  E-value=2.8e-11  Score=118.64  Aligned_cols=137  Identities=15%  Similarity=0.070  Sum_probs=89.3

Q ss_pred             cchhHHHHHHHHhcCC-CCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCC--ceEE
Q 009871          316 LWESAHLMAAVLARNP-TIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLA--KLIT  392 (523)
Q Consensus       316 ~W~~a~~la~~l~~~~-~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~--~v~~  392 (523)
                      .|-.+.++..++.... ...++.+|||||||+|.....+++.+..+|+|+|+|+.||+.|+++....+......  .+.+
T Consensus        28 n~vks~li~~~~~~~~~~~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f  107 (302)
T 2vdw_A           28 NYVKTLLISMYCSKTFLDDSNKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDY  107 (302)
T ss_dssp             HHHHHHHHHHHTCTTTSSCCSCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEE
T ss_pred             HHHHHHHHHHHHhhhhhccCCCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhccccccccccccch
Confidence            4655656665553311 112578999999999965655666666789999999999999998876543210000  1334


Q ss_pred             EeeecCCCCcchhhh-hhcCCCccEEEEccccCC---CCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee
Q 009871          393 KRLEWGNRDHIEAIK-EENNEGFEVILGTDVSYI---PEAILPLFATAKELTASSNKSLREDQQPAFILCHIF  461 (523)
Q Consensus       393 ~~ldw~~~~~~~~~~-~~~~~~fD~Ii~~d~~y~---~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~  461 (523)
                      ...+.........+. .+++++||+|++..++++   .+....+++.+.++|         +|||.++++...
T Consensus       108 ~~~d~~~d~~~~~l~~~~~~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~L---------kpGG~~i~~~~~  171 (302)
T 2vdw_A          108 IQETIRSDTFVSSVREVFYFGKFNIIDWQFAIHYSFHPRHYATVMNNLSELT---------ASGGKVLITTMD  171 (302)
T ss_dssp             EECCTTSSSHHHHHHTTCCSSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHE---------EEEEEEEEEEEC
T ss_pred             hhhhcccchhhhhhhccccCCCeeEEEECchHHHhCCHHHHHHHHHHHHHHc---------CCCCEEEEEeCC
Confidence            333332211101121 234579999999887743   356789999999999         779999887653

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=99.26  E-value=6.8e-11  Score=109.92  Aligned_cols=132  Identities=11%  Similarity=-0.010  Sum_probs=94.6

Q ss_pred             CCCeEEEECCCccHHHHHHHhcC-CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCC
Q 009871          335 AGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG  413 (523)
Q Consensus       335 ~~~~VLElG~G~G~l~~~~a~~~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~  413 (523)
                      .+.+|||||||+|.++..+++.. ..+|+++|+++.+++.|++|+..++.    .++.+...|..+   +..  .+++++
T Consensus        38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~----~nv~~~~~d~~~---l~~--~~~~~~  108 (213)
T 2fca_A           38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEA----QNVKLLNIDADT---LTD--VFEPGE  108 (213)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCC----SSEEEECCCGGG---HHH--HCCTTS
T ss_pred             CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCC----CCEEEEeCCHHH---HHh--hcCcCC
Confidence            56799999999999888888874 45899999999999999999998765    346666555432   111  144678


Q ss_pred             ccEEEEccccCCCC--------ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhHHHHHHHHcCCEEEEEcC
Q 009871          414 FEVILGTDVSYIPE--------AILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLVDKWP  485 (523)
Q Consensus       414 fD~Ii~~d~~y~~~--------~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~~~~~~~~gf~~~~~~~  485 (523)
                      ||.|+..-..-+..        ....+++.+.++|         +|||.+++...... ......+.+.+.||....+..
T Consensus       109 ~d~v~~~~~~p~~~~~~~~~rl~~~~~l~~~~~~L---------kpgG~l~~~td~~~-~~~~~~~~~~~~g~~~~~~~~  178 (213)
T 2fca_A          109 VKRVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVM---------GKGGSIHFKTDNRG-LFEYSLKSFSEYGLLLTYVSL  178 (213)
T ss_dssp             CCEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHH---------TTSCEEEEEESCHH-HHHHHHHHHHHHTCEEEEEES
T ss_pred             cCEEEEECCCCCcCccccccccCcHHHHHHHHHHc---------CCCCEEEEEeCCHH-HHHHHHHHHHHCCCccccccc
Confidence            99998752211111        1478999999999         78999998763321 112456777788998876643

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=99.26  E-value=1e-10  Score=118.20  Aligned_cols=132  Identities=10%  Similarity=0.058  Sum_probs=105.2

Q ss_pred             CCCCCCeEEEECCCccHHHHHHHhcCC-CEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhc
Q 009871          332 TIVAGKKVLELGCGCGGICSMVAAGSA-DLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEEN  410 (523)
Q Consensus       332 ~~~~~~~VLElG~G~G~l~~~~a~~~~-~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~  410 (523)
                      ...++.+|||+|||+|.++..+++..+ .+++++|+ +.+++.+++++...++.   .++.+...|..+.        ++
T Consensus       199 ~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~l~---~~v~~~~~d~~~~--------~p  266 (369)
T 3gwz_A          199 DFSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRGLA---DRCEILPGDFFET--------IP  266 (369)
T ss_dssp             CCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCT---TTEEEEECCTTTC--------CC
T ss_pred             CCccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcCcC---CceEEeccCCCCC--------CC
Confidence            344678999999999998888888753 48999999 99999999999887664   5788888777622        22


Q ss_pred             CCCccEEEEccccCCCCChH--HHHHHHHHHhhccCCCCCCCCCcEEEEEEeecC----------------------CCh
Q 009871          411 NEGFEVILGTDVSYIPEAIL--PLFATAKELTASSNKSLREDQQPAFILCHIFRQ----------------------VDE  466 (523)
Q Consensus       411 ~~~fD~Ii~~d~~y~~~~~~--~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~----------------------~~~  466 (523)
                       ..||+|++..++++.....  .+++.+.++|         +|||.+++......                      .+.
T Consensus       267 -~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L---------~pgG~l~i~e~~~~~~~~~~~~~~d~~~~~~~~g~~~t~  336 (369)
T 3gwz_A          267 -DGADVYLIKHVLHDWDDDDVVRILRRIATAM---------KPDSRLLVIDNLIDERPAASTLFVDLLLLVLVGGAERSE  336 (369)
T ss_dssp             -SSCSEEEEESCGGGSCHHHHHHHHHHHHTTC---------CTTCEEEEEEEBCCSSCCHHHHHHHHHHHHHHSCCCBCH
T ss_pred             -CCceEEEhhhhhccCCHHHHHHHHHHHHHHc---------CCCCEEEEEEeccCCCCCCchhHhhHHHHhhcCCccCCH
Confidence             2799999999998766544  7999999999         77999998765432                      234


Q ss_pred             hHHHHHHHHcCCEEEEEcC
Q 009871          467 PSMLSAATQCGFRLVDKWP  485 (523)
Q Consensus       467 ~~~~~~~~~~gf~~~~~~~  485 (523)
                      .++.+.++++||++.+++.
T Consensus       337 ~e~~~ll~~aGf~~~~~~~  355 (369)
T 3gwz_A          337 SEFAALLEKSGLRVERSLP  355 (369)
T ss_dssp             HHHHHHHHTTTEEEEEEEE
T ss_pred             HHHHHHHHHCCCeEEEEEE
Confidence            5677888999999999976

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=99.26  E-value=5.7e-11  Score=110.05  Aligned_cols=108  Identities=16%  Similarity=0.109  Sum_probs=82.7

Q ss_pred             HHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcch
Q 009871          325 AVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIE  404 (523)
Q Consensus       325 ~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~  404 (523)
                      +++.....  ++.+|||+|||+|.++..+   +..+|+++|+++.+++.++++.         ..+.+...|..+.    
T Consensus        28 ~~l~~~~~--~~~~vLdiG~G~G~~~~~l---~~~~v~~vD~s~~~~~~a~~~~---------~~~~~~~~d~~~~----   89 (211)
T 2gs9_A           28 RALKGLLP--PGESLLEVGAGTGYWLRRL---PYPQKVGVEPSEAMLAVGRRRA---------PEATWVRAWGEAL----   89 (211)
T ss_dssp             HHHHTTCC--CCSEEEEETCTTCHHHHHC---CCSEEEEECCCHHHHHHHHHHC---------TTSEEECCCTTSC----
T ss_pred             HHHHHhcC--CCCeEEEECCCCCHhHHhC---CCCeEEEEeCCHHHHHHHHHhC---------CCcEEEEcccccC----
Confidence            44444432  7889999999999766555   4448999999999999998875         1344544444332    


Q ss_pred             hhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec
Q 009871          405 AIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFR  462 (523)
Q Consensus       405 ~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r  462 (523)
                         ++++++||+|++..++++......+++.+.++|         +|||.++++...+
T Consensus        90 ---~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L---------~pgG~l~i~~~~~  135 (211)
T 2gs9_A           90 ---PFPGESFDVVLLFTTLEFVEDVERVLLEARRVL---------RPGGALVVGVLEA  135 (211)
T ss_dssp             ---CSCSSCEEEEEEESCTTTCSCHHHHHHHHHHHE---------EEEEEEEEEEECT
T ss_pred             ---CCCCCcEEEEEEcChhhhcCCHHHHHHHHHHHc---------CCCCEEEEEecCC
Confidence               234568999999999999989999999999999         6799999887653

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.25  E-value=3.7e-11  Score=112.19  Aligned_cols=118  Identities=11%  Similarity=0.147  Sum_probs=92.9

Q ss_pred             CCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCcc
Q 009871          336 GKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFE  415 (523)
Q Consensus       336 ~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~fD  415 (523)
                      +.+|||+|||+|.++..++..     +++|+++.+++.++++           .+.+...+..+.       ++..++||
T Consensus        48 ~~~vLDiG~G~G~~~~~l~~~-----~~vD~s~~~~~~a~~~-----------~~~~~~~d~~~~-------~~~~~~fD  104 (219)
T 1vlm_A           48 EGRGVEIGVGTGRFAVPLKIK-----IGVEPSERMAEIARKR-----------GVFVLKGTAENL-------PLKDESFD  104 (219)
T ss_dssp             SSCEEEETCTTSTTHHHHTCC-----EEEESCHHHHHHHHHT-----------TCEEEECBTTBC-------CSCTTCEE
T ss_pred             CCcEEEeCCCCCHHHHHHHHH-----hccCCCHHHHHHHHhc-----------CCEEEEcccccC-------CCCCCCee
Confidence            789999999999877766554     9999999999999876           234444444322       23356899


Q ss_pred             EEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecC----------------------CChhHHHHHH
Q 009871          416 VILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ----------------------VDEPSMLSAA  473 (523)
Q Consensus       416 ~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~----------------------~~~~~~~~~~  473 (523)
                      +|++..++++......+++.+.++|         +|||.++++...+.                      .+...+.+.+
T Consensus       105 ~v~~~~~l~~~~~~~~~l~~~~~~L---------~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l  175 (219)
T 1vlm_A          105 FALMVTTICFVDDPERALKEAYRIL---------KKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLM  175 (219)
T ss_dssp             EEEEESCGGGSSCHHHHHHHHHHHE---------EEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHH
T ss_pred             EEEEcchHhhccCHHHHHHHHHHHc---------CCCcEEEEEEeCCccHHHHHHHHHhcCcchhcccccCCHHHHHHHH
Confidence            9999999999889999999999999         67999998765421                      2456788889


Q ss_pred             HHcCCEEEEEcC
Q 009871          474 TQCGFRLVDKWP  485 (523)
Q Consensus       474 ~~~gf~~~~~~~  485 (523)
                      +++||++.++..
T Consensus       176 ~~~Gf~~~~~~~  187 (219)
T 1vlm_A          176 RKAGFEEFKVVQ  187 (219)
T ss_dssp             HHTTCEEEEEEE
T ss_pred             HHCCCeEEEEec
Confidence            999999988754

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=99.25  E-value=3.6e-11  Score=116.55  Aligned_cols=130  Identities=14%  Similarity=0.178  Sum_probs=99.5

Q ss_pred             CCCCCCCeEEEECCCccHHHHHHHhc-C-CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhh
Q 009871          331 PTIVAGKKVLELGCGCGGICSMVAAG-S-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKE  408 (523)
Q Consensus       331 ~~~~~~~~VLElG~G~G~l~~~~a~~-~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~  408 (523)
                      ....++.+|||+|||+|.++..++.. + ..+|+++|+++.+++.+++|+..++..   .++.+...|+.+.        
T Consensus       108 ~~~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~---~~v~~~~~d~~~~--------  176 (277)
T 1o54_A          108 LDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLI---ERVTIKVRDISEG--------  176 (277)
T ss_dssp             TTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCG---GGEEEECCCGGGC--------
T ss_pred             hCCCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCC---CCEEEEECCHHHc--------
Confidence            34567889999999999988888887 5 469999999999999999999987653   3566665555332        


Q ss_pred             hcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhHHHHHHHHcCCEEEEEcCC
Q 009871          409 ENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLVDKWPS  486 (523)
Q Consensus       409 ~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~~~~~~~~gf~~~~~~~~  486 (523)
                      ++.++||+|++.     ......+++.+.++|         +|+|.+++..... .....+.+.+++.||...+++..
T Consensus       177 ~~~~~~D~V~~~-----~~~~~~~l~~~~~~L---------~pgG~l~~~~~~~-~~~~~~~~~l~~~gf~~~~~~~~  239 (277)
T 1o54_A          177 FDEKDVDALFLD-----VPDPWNYIDKCWEAL---------KGGGRFATVCPTT-NQVQETLKKLQELPFIRIEVWES  239 (277)
T ss_dssp             CSCCSEEEEEEC-----CSCGGGTHHHHHHHE---------EEEEEEEEEESSH-HHHHHHHHHHHHSSEEEEEEECC
T ss_pred             ccCCccCEEEEC-----CcCHHHHHHHHHHHc---------CCCCEEEEEeCCH-HHHHHHHHHHHHCCCceeEEEEE
Confidence            234589999983     345668899999999         6799988876532 12346777888899998888763

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=99.25  E-value=1.2e-12  Score=121.64  Aligned_cols=119  Identities=16%  Similarity=0.123  Sum_probs=72.7

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCC-----Ccee
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISP-----SSID  148 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~-----~~fD  148 (523)
                      .++.+|||+|||+|..+..+++.+++.+|+|+|+|+.|++.|+++....+.+++++++|+.+     ++++     ++||
T Consensus        29 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~-----~~~~~~~~~~~fD  103 (215)
T 4dzr_A           29 PSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGAVVDWAAADGIE-----WLIERAERGRPWH  103 (215)
T ss_dssp             CTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC-------------------CCHHHHHH-----HHHHHHHTTCCBS
T ss_pred             CCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCCceEEEEcchHh-----hhhhhhhccCccc
Confidence            57789999999999999999999888899999999999999999875443378888888875     2333     8999


Q ss_pred             EEEE-cccc---------ccc-------------------eee-ec-ceEEecCCe-EEEe---eCHHHHHHHHH--hCC
Q 009871          149 IVTM-ERLT---------GKD-------------------QKI-SE-NFYVRGDGT-RAFY---FSNDFLTSLFK--ENG  191 (523)
Q Consensus       149 ~V~~-~~~~---------~~~-------------------~~~-~~-~~~~~~~g~-~~~~---~~~~~l~~ll~--~~G  191 (523)
                      +|++ ..+.         ...                   ..+ .. ...++++|. .++.   ...+++.+++.  +.|
T Consensus       104 ~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~~~g  183 (215)
T 4dzr_A          104 AIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVGHNQADEVARLFAPWRER  183 (215)
T ss_dssp             EEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECTTSCHHHHHHHTGGGGGG
T ss_pred             EEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEECCccHHHHHHHHHHhhcC
Confidence            9999 1110         000                   000 00 125788998 5442   36788999999  999


Q ss_pred             CcEEEE
Q 009871          192 FDVEEL  197 (523)
Q Consensus       192 f~~~~~  197 (523)
                      |..+++
T Consensus       184 f~~~~~  189 (215)
T 4dzr_A          184 GFRVRK  189 (215)
T ss_dssp             TEECCE
T ss_pred             CceEEE
Confidence            976543

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=99.25  E-value=9.1e-12  Score=117.61  Aligned_cols=117  Identities=13%  Similarity=0.277  Sum_probs=80.3

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccc-------cCCCcEEEEEeeccCCccCCCCCCCc
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKD-------FTETRVSTFVCDLISDDLSRQISPSS  146 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~-------~~~~~v~~~~~d~~~~~~~~~~~~~~  146 (523)
                      .++.+|||||||+|.++..|++.+|+..|+|||+|+.|++.|+++..       ....+++++++|+.+. ++..+++++
T Consensus        45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~-l~~~~~~~~  123 (235)
T 3ckk_A           45 QAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKH-LPNFFYKGQ  123 (235)
T ss_dssp             -CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTC-HHHHCCTTC
T ss_pred             CCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHh-hhhhCCCcC
Confidence            45678999999999999999999998999999999999999987542       2236899999999751 111256889


Q ss_pred             eeEEEE---cccccc---ce------eeec-ceEEecCCeEEEeeC----HHHHHHHHHhCC
Q 009871          147 IDIVTM---ERLTGK---DQ------KISE-NFYVRGDGTRAFYFS----NDFLTSLFKENG  191 (523)
Q Consensus       147 fD~V~~---~~~~~~---~~------~~~~-~~~~~~~g~~~~~~~----~~~l~~ll~~~G  191 (523)
                      ||.|++   ....+.   ..      .+.. ...++++|.+.+...    .+.+.+.+.+.|
T Consensus       124 ~D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td~~~~~~~~~~~l~~~~  185 (235)
T 3ckk_A          124 LTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITDVLELHDWMCTHFEEHP  185 (235)
T ss_dssp             EEEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHHTST
T ss_pred             eeEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeCCHHHHHHHHHHHHHCC
Confidence            999987   111000   00      0000 125788888776443    244566666665

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=99.25  E-value=1.2e-10  Score=116.05  Aligned_cols=132  Identities=11%  Similarity=0.026  Sum_probs=105.4

Q ss_pred             CCCCCeEEEECCCccHHHHHHHhcC-CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcC
Q 009871          333 IVAGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENN  411 (523)
Q Consensus       333 ~~~~~~VLElG~G~G~l~~~~a~~~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~  411 (523)
                      ..+..+|||+|||+|.++..+++.. ..+++++|+ +.+++.+++++...++.   .++.+...|..+.        ++ 
T Consensus       167 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~---~~v~~~~~d~~~~--------~p-  233 (332)
T 3i53_A          167 WAALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTGLS---GRAQVVVGSFFDP--------LP-  233 (332)
T ss_dssp             CGGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCT---TTEEEEECCTTSC--------CC-
T ss_pred             CCCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcCcC---cCeEEecCCCCCC--------CC-
Confidence            3456799999999998888888764 448999999 99999999999887664   5788888776522        22 


Q ss_pred             CCccEEEEccccCCCCC--hHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecC--------------------CChhHH
Q 009871          412 EGFEVILGTDVSYIPEA--ILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ--------------------VDEPSM  469 (523)
Q Consensus       412 ~~fD~Ii~~d~~y~~~~--~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~--------------------~~~~~~  469 (523)
                      .+||+|++..++++...  ...+++.+.++|         +|||.+++......                    .+..++
T Consensus       234 ~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L---------~pgG~l~i~e~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~  304 (332)
T 3i53_A          234 AGAGGYVLSAVLHDWDDLSAVAILRRCAEAA---------GSGGVVLVIEAVAGDEHAGTGMDLRMLTYFGGKERSLAEL  304 (332)
T ss_dssp             CSCSEEEEESCGGGSCHHHHHHHHHHHHHHH---------TTTCEEEEEECCCC---CCHHHHHHHHHHHSCCCCCHHHH
T ss_pred             CCCcEEEEehhhccCCHHHHHHHHHHHHHhc---------CCCCEEEEEeecCCCCCccHHHHHHHHhhCCCCCCCHHHH
Confidence            28999999999987665  588999999999         77999998765321                    234567


Q ss_pred             HHHHHHcCCEEEEEcCC
Q 009871          470 LSAATQCGFRLVDKWPS  486 (523)
Q Consensus       470 ~~~~~~~gf~~~~~~~~  486 (523)
                      .+.++++||++.+++..
T Consensus       305 ~~ll~~aGf~~~~~~~~  321 (332)
T 3i53_A          305 GELAAQAGLAVRAAHPI  321 (332)
T ss_dssp             HHHHHHTTEEEEEEEEC
T ss_pred             HHHHHHCCCEEEEEEEC
Confidence            78889999999999864

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=99.25  E-value=4e-11  Score=117.24  Aligned_cols=133  Identities=11%  Similarity=0.142  Sum_probs=94.4

Q ss_pred             CCCCeEEEECCCccHHHHH----HHhcC-CCEE--EEEcCChHHHHHHHHHHHhc-CCCCCCCceEEEeeecCCCCcchh
Q 009871          334 VAGKKVLELGCGCGGICSM----VAAGS-ADLV--VATDGDSIALDLLAQNVTAN-LKPPFLAKLITKRLEWGNRDHIEA  405 (523)
Q Consensus       334 ~~~~~VLElG~G~G~l~~~----~a~~~-~~~V--~~~D~~~~~l~~~~~n~~~n-~~~~~~~~v~~~~ldw~~~~~~~~  405 (523)
                      .++.+|||||||+|.++..    ++..+ ...|  +++|.|+.|++.+++++... +.    ..+.+   .|...+ ...
T Consensus        51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~----~~v~~---~~~~~~-~~~  122 (292)
T 2aot_A           51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNL----ENVKF---AWHKET-SSE  122 (292)
T ss_dssp             CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSC----TTEEE---EEECSC-HHH
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCC----CcceE---EEEecc-hhh
Confidence            3567999999999965542    23332 3344  99999999999999987653 22    23333   333322 112


Q ss_pred             hh-----hhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec------------------
Q 009871          406 IK-----EENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFR------------------  462 (523)
Q Consensus       406 ~~-----~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r------------------  462 (523)
                      +.     ++.+++||+|+++.++++..+...+++.+.++|         +|||.++++...+                  
T Consensus       123 ~~~~~~~~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~L---------kpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~  193 (292)
T 2aot_A          123 YQSRMLEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLL---------GTNAKMLIIVVSGSSGWDKLWKKYGSRFPQD  193 (292)
T ss_dssp             HHHHHHTTTCCCCEEEEEEESCGGGCSCHHHHHHHHHHTE---------EEEEEEEEEEECTTSHHHHHHHHHGGGSCCC
T ss_pred             hhhhhccccCCCceeEEEEeeeeeecCCHHHHHHHHHHHc---------CCCcEEEEEEecCCccHHHHHHHHHHhccCC
Confidence            21     134678999999999999999999999999999         6799998875332                  


Q ss_pred             ----CCChhHHHHHHHHcCCEEEEE
Q 009871          463 ----QVDEPSMLSAATQCGFRLVDK  483 (523)
Q Consensus       463 ----~~~~~~~~~~~~~~gf~~~~~  483 (523)
                          ..+..++.+.++++||++...
T Consensus       194 ~~~~~~~~~~~~~~l~~aGf~~~~~  218 (292)
T 2aot_A          194 DLCQYITSDDLTQMLDNLGLKYECY  218 (292)
T ss_dssp             TTCCCCCHHHHHHHHHHHTCCEEEE
T ss_pred             CcccCCCHHHHHHHHHHCCCceEEE
Confidence                123456778889999998774

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=99.25  E-value=2.7e-11  Score=114.41  Aligned_cols=108  Identities=9%  Similarity=0.070  Sum_probs=79.2

Q ss_pred             HHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCC
Q 009871          322 LMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRD  401 (523)
Q Consensus       322 ~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~  401 (523)
                      .+.+++....  .++.+|||+|||+|.++..++..+. +|+++|+|+.+++.++++.         .++.+...|..+. 
T Consensus        29 ~~~~~l~~~~--~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~s~~~~~~a~~~~---------~~~~~~~~d~~~~-   95 (239)
T 3bxo_A           29 DIADLVRSRT--PEASSLLDVACGTGTHLEHFTKEFG-DTAGLELSEDMLTHARKRL---------PDATLHQGDMRDF-   95 (239)
T ss_dssp             HHHHHHHHHC--TTCCEEEEETCTTSHHHHHHHHHHS-EEEEEESCHHHHHHHHHHC---------TTCEEEECCTTTC-
T ss_pred             HHHHHHHHhc--CCCCeEEEecccCCHHHHHHHHhCC-cEEEEeCCHHHHHHHHHhC---------CCCEEEECCHHHc-
Confidence            4555555443  3678999999999988888888765 8999999999999998763         2345555555432 


Q ss_pred             cchhhhhhcCCCccEEEE-ccccCCC---CChHHHHHHHHHHhhccCCCCCCCCCcEEEEE
Q 009871          402 HIEAIKEENNEGFEVILG-TDVSYIP---EAILPLFATAKELTASSNKSLREDQQPAFILC  458 (523)
Q Consensus       402 ~~~~~~~~~~~~fD~Ii~-~d~~y~~---~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~  458 (523)
                            +. +++||+|++ .+++.+.   +....+++.+.++|         +|||.+++.
T Consensus        96 ------~~-~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L---------~pgG~l~~~  140 (239)
T 3bxo_A           96 ------RL-GRKFSAVVSMFSSVGYLKTTEELGAAVASFAEHL---------EPGGVVVVE  140 (239)
T ss_dssp             ------CC-SSCEEEEEECTTGGGGCCSHHHHHHHHHHHHHTE---------EEEEEEEEC
T ss_pred             ------cc-CCCCcEEEEcCchHhhcCCHHHHHHHHHHHHHhc---------CCCeEEEEE
Confidence                  12 468999995 5577665   45678889999999         557777664

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.25  E-value=7e-12  Score=118.61  Aligned_cols=146  Identities=19%  Similarity=0.243  Sum_probs=100.0

Q ss_pred             cccchhHH--HHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceE
Q 009871          314 LMLWESAH--LMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLI  391 (523)
Q Consensus       314 ~~~W~~a~--~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~  391 (523)
                      +..|+..+  .+++.+.     .+|.+|||||||+|..+..+++..+.+|+++|+++.+++.|+++...++.     .+.
T Consensus        42 m~~we~~~m~~~a~~~~-----~~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~~~~~~~~~-----~~~  111 (236)
T 3orh_A           42 MERWETPYMHALAAAAS-----SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTH-----KVI  111 (236)
T ss_dssp             EEGGGHHHHHHHHHHHT-----TTCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHHHHGGGCSS-----EEE
T ss_pred             HHHHHHHHHHHHHHhhc-----cCCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHHHHHhhCCC-----ceE
Confidence            45687654  3455442     37889999999999888888777777999999999999999998876543     455


Q ss_pred             EEeeecCCCCcchhhhhhcCCCccEEEEc-----cccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec----
Q 009871          392 TKRLEWGNRDHIEAIKEENNEGFEVILGT-----DVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFR----  462 (523)
Q Consensus       392 ~~~ldw~~~~~~~~~~~~~~~~fD~Ii~~-----d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r----  462 (523)
                      +...+|.+.     ...++..+||.|+.-     ....+......+++.+.++|         +|||+++++....    
T Consensus       112 ~~~~~a~~~-----~~~~~~~~FD~i~~D~~~~~~~~~~~~~~~~~~~e~~rvL---------kPGG~l~f~~~~~~~~~  177 (236)
T 3orh_A          112 PLKGLWEDV-----APTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLL---------KPGGVLTYCNLTSWGEL  177 (236)
T ss_dssp             EEESCHHHH-----GGGSCTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHE---------EEEEEEEECCHHHHHHH
T ss_pred             EEeehHHhh-----cccccccCCceEEEeeeecccchhhhcchhhhhhhhhhee---------CCCCEEEEEecCCchhh
Confidence            555555321     123456789999752     22334456778899999999         7799998865321    


Q ss_pred             -C--CC------hhHHHHHHHHcCCEEEEE
Q 009871          463 -Q--VD------EPSMLSAATQCGFRLVDK  483 (523)
Q Consensus       463 -~--~~------~~~~~~~~~~~gf~~~~~  483 (523)
                       .  ..      .......+.++||+++.+
T Consensus       178 ~~~~~~~~~~~~~~~~~~~L~eaGF~~~~i  207 (236)
T 3orh_A          178 MKSKYSDITIMFEETQVPALLEAGFRRENI  207 (236)
T ss_dssp             TTTTCSCHHHHHHHHTHHHHHHHTCCGGGE
T ss_pred             hhhhhhhhhhhhHHHHHHHHHHcCCeEEEE
Confidence             0  11      112344567889986443

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=99.25  E-value=2e-11  Score=121.33  Aligned_cols=112  Identities=16%  Similarity=0.211  Sum_probs=86.7

Q ss_pred             HHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcch
Q 009871          325 AVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIE  404 (523)
Q Consensus       325 ~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~  404 (523)
                      +.+.......++++|||||||+|.++..+++.++.+|+++|++ .+++.+++++..|+..   .++.+...|..+.    
T Consensus        28 ~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s-~~~~~a~~~~~~~~~~---~~i~~~~~d~~~~----   99 (328)
T 1g6q_1           28 NAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMS-SIIEMAKELVELNGFS---DKITLLRGKLEDV----   99 (328)
T ss_dssp             HHHHHHHHHHTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESS-THHHHHHHHHHHTTCT---TTEEEEESCTTTS----
T ss_pred             HHHHhhHhhcCCCEEEEecCccHHHHHHHHHCCCCEEEEEChH-HHHHHHHHHHHHcCCC---CCEEEEECchhhc----
Confidence            3333333345788999999999988888888877799999999 5999999999998875   5677776665443    


Q ss_pred             hhhhhcCCCccEEEEccccC---CCCChHHHHHHHHHHhhccCCCCCCCCCcEEE
Q 009871          405 AIKEENNEGFEVILGTDVSY---IPEAILPLFATAKELTASSNKSLREDQQPAFI  456 (523)
Q Consensus       405 ~~~~~~~~~fD~Ii~~d~~y---~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~  456 (523)
                         +++.++||+|++..+.|   +...+..++..+.++|         +|||.++
T Consensus       100 ---~~~~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~L---------kpgG~li  142 (328)
T 1g6q_1          100 ---HLPFPKVDIIISEWMGYFLLYESMMDTVLYARDHYL---------VEGGLIF  142 (328)
T ss_dssp             ---CCSSSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHE---------EEEEEEE
T ss_pred             ---cCCCCcccEEEEeCchhhcccHHHHHHHHHHHHhhc---------CCCeEEE
Confidence               12346899999975433   4667889999999999         6788887

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=99.25  E-value=9.1e-11  Score=118.86  Aligned_cols=133  Identities=12%  Similarity=0.070  Sum_probs=103.7

Q ss_pred             CCCCCCeEEEECCCccHHHHHHHhcC-CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhc
Q 009871          332 TIVAGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEEN  410 (523)
Q Consensus       332 ~~~~~~~VLElG~G~G~l~~~~a~~~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~  410 (523)
                      ...++.+|||+|||+|.++..++... ..+++++|+ +.+++.+++++..+++.   .++.+...|+.+.        + 
T Consensus       179 ~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~---~~v~~~~~d~~~~--------~-  245 (374)
T 1qzz_A          179 DWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLA---DRVTVAEGDFFKP--------L-  245 (374)
T ss_dssp             CCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCT---TTEEEEECCTTSC--------C-
T ss_pred             CCCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcCCC---CceEEEeCCCCCc--------C-
Confidence            34467899999999998888888875 358999999 99999999999887764   4688877776532        1 


Q ss_pred             CCCccEEEEccccCCCCCh--HHHHHHHHHHhhccCCCCCCCCCcEEEEEEe--ec-----------------------C
Q 009871          411 NEGFEVILGTDVSYIPEAI--LPLFATAKELTASSNKSLREDQQPAFILCHI--FR-----------------------Q  463 (523)
Q Consensus       411 ~~~fD~Ii~~d~~y~~~~~--~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~--~r-----------------------~  463 (523)
                      +..||+|+++.++++....  ..+++.+.++|         +|||.+++...  ..                       .
T Consensus       246 ~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L---------~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (374)
T 1qzz_A          246 PVTADVVLLSFVLLNWSDEDALTILRGCVRAL---------EPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRV  316 (374)
T ss_dssp             SCCEEEEEEESCGGGSCHHHHHHHHHHHHHHE---------EEEEEEEEEECCH-------HHHHHHHHHHHHHHHSCCC
T ss_pred             CCCCCEEEEeccccCCCHHHHHHHHHHHHHhc---------CCCcEEEEEechhhcCCCCCcchhhhcchHHHHhCCCcC
Confidence            2359999999999876544  48999999999         67999888765  21                       1


Q ss_pred             CChhHHHHHHHHcCCEEEEEcCC
Q 009871          464 VDEPSMLSAATQCGFRLVDKWPS  486 (523)
Q Consensus       464 ~~~~~~~~~~~~~gf~~~~~~~~  486 (523)
                      .+..++.+.++++||++.+++..
T Consensus       317 ~~~~~~~~ll~~aGf~~~~~~~~  339 (374)
T 1qzz_A          317 RTRDEVVDLAGSAGLALASERTS  339 (374)
T ss_dssp             CCHHHHHHHHHTTTEEEEEEEEE
T ss_pred             CCHHHHHHHHHHCCCceEEEEEC
Confidence            24456777889999999888764

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=99.25  E-value=3.2e-11  Score=118.26  Aligned_cols=107  Identities=14%  Similarity=0.089  Sum_probs=80.7

Q ss_pred             CCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCc
Q 009871          335 AGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGF  414 (523)
Q Consensus       335 ~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~f  414 (523)
                      ++.+|||||||+|.++..++..+ .+|+++|+|+.+++.+++++..++... ..++.+...|..+.       ++ +++|
T Consensus        82 ~~~~vLDlGcG~G~~~~~l~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~-~~~v~~~~~d~~~~-------~~-~~~f  151 (299)
T 3g2m_A           82 VSGPVLELAAGMGRLTFPFLDLG-WEVTALELSTSVLAAFRKRLAEAPADV-RDRCTLVQGDMSAF-------AL-DKRF  151 (299)
T ss_dssp             CCSCEEEETCTTTTTHHHHHTTT-CCEEEEESCHHHHHHHHHHHHTSCHHH-HTTEEEEECBTTBC-------CC-SCCE
T ss_pred             CCCcEEEEeccCCHHHHHHHHcC-CeEEEEECCHHHHHHHHHHHhhccccc-ccceEEEeCchhcC-------Cc-CCCc
Confidence            34499999999998888888885 579999999999999999988754210 03567777766543       11 4689


Q ss_pred             cEEEEc-cccCCCC--ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEe
Q 009871          415 EVILGT-DVSYIPE--AILPLFATAKELTASSNKSLREDQQPAFILCHI  460 (523)
Q Consensus       415 D~Ii~~-d~~y~~~--~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~  460 (523)
                      |+|+++ .++++..  ....+++.+.++|         +|||.+++...
T Consensus       152 D~v~~~~~~~~~~~~~~~~~~l~~~~~~L---------~pgG~l~~~~~  191 (299)
T 3g2m_A          152 GTVVISSGSINELDEADRRGLYASVREHL---------EPGGKFLLSLA  191 (299)
T ss_dssp             EEEEECHHHHTTSCHHHHHHHHHHHHHHE---------EEEEEEEEEEE
T ss_pred             CEEEECCcccccCCHHHHHHHHHHHHHHc---------CCCcEEEEEee
Confidence            999865 5555443  4689999999999         67898888653

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=99.24  E-value=3.3e-11  Score=115.37  Aligned_cols=129  Identities=17%  Similarity=0.145  Sum_probs=99.2

Q ss_pred             CCCCCCCeEEEECCCccHHHHHHHhc-C-CCEEEEEcCChHHHHHHHHHHHhc-CCCCCCCceEEEeeecCCCCcchhhh
Q 009871          331 PTIVAGKKVLELGCGCGGICSMVAAG-S-ADLVVATDGDSIALDLLAQNVTAN-LKPPFLAKLITKRLEWGNRDHIEAIK  407 (523)
Q Consensus       331 ~~~~~~~~VLElG~G~G~l~~~~a~~-~-~~~V~~~D~~~~~l~~~~~n~~~n-~~~~~~~~v~~~~ldw~~~~~~~~~~  407 (523)
                      ....++.+|||+|||+|.++..++.. + ..+|+++|+++.+++.+++|+..+ +.    .++.+...|+.+.       
T Consensus        92 ~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~----~~v~~~~~d~~~~-------  160 (258)
T 2pwy_A           92 LDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQV----ENVRFHLGKLEEA-------  160 (258)
T ss_dssp             TTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCC----CCEEEEESCGGGC-------
T ss_pred             cCCCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCC----CCEEEEECchhhc-------
Confidence            34567889999999999888888887 5 469999999999999999999887 62    4567766665432       


Q ss_pred             hhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhHHHHHHHHcCCEEEEEcC
Q 009871          408 EENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLVDKWP  485 (523)
Q Consensus       408 ~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~~~~~~~~gf~~~~~~~  485 (523)
                      +++.++||+|++.     ......+++.+.++|         +|+|.+++..... .....+.+.+++.||...++++
T Consensus       161 ~~~~~~~D~v~~~-----~~~~~~~l~~~~~~L---------~~gG~l~~~~~~~-~~~~~~~~~l~~~gf~~~~~~~  223 (258)
T 2pwy_A          161 ELEEAAYDGVALD-----LMEPWKVLEKAALAL---------KPDRFLVAYLPNI-TQVLELVRAAEAHPFRLERVLE  223 (258)
T ss_dssp             CCCTTCEEEEEEE-----SSCGGGGHHHHHHHE---------EEEEEEEEEESCH-HHHHHHHHHHTTTTEEEEEEEE
T ss_pred             CCCCCCcCEEEEC-----CcCHHHHHHHHHHhC---------CCCCEEEEEeCCH-HHHHHHHHHHHHCCCceEEEEE
Confidence            1334689999983     345668899999999         6799988876542 2234677778889999887765

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=99.24  E-value=6.9e-11  Score=113.09  Aligned_cols=121  Identities=17%  Similarity=0.122  Sum_probs=91.7

Q ss_pred             hhcCCCCCeEEEECCCccccHHHHHhh-CCCCEEEEEeCCHHHHHHHHhccccC--CCcEEEEEeeccCCccCCCCCCCc
Q 009871           70 YFSGAGRKDVLEVGCGAGNTIFPLIAA-YPDVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISDDLSRQISPSS  146 (523)
Q Consensus        70 ~~~~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~v~gvD~S~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~~~~~~~~~~  146 (523)
                      .+...++.+|||+|||+|.++..+++. .|+.+|+|+|+|+.+++.|+++....  ..++++.++|+.+.    ++++++
T Consensus        91 ~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~----~~~~~~  166 (258)
T 2pwy_A           91 LLDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEA----ELEEAA  166 (258)
T ss_dssp             HTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGC----CCCTTC
T ss_pred             HcCCCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhc----CCCCCC
Confidence            344467889999999999999999998 77889999999999999999976432  36799999999876    466789


Q ss_pred             eeEEEE-----ccccccceeeecceEEecCCeEEEee----CHHHHHHHHHhCCCcEEEEEe
Q 009871          147 IDIVTM-----ERLTGKDQKISENFYVRGDGTRAFYF----SNDFLTSLFKENGFDVEELGL  199 (523)
Q Consensus       147 fD~V~~-----~~~~~~~~~~~~~~~~~~~g~~~~~~----~~~~l~~ll~~~Gf~~~~~~~  199 (523)
                      ||+|++     ..++....+     .++++|.++...    ...++.+.+++.||..++...
T Consensus       167 ~D~v~~~~~~~~~~l~~~~~-----~L~~gG~l~~~~~~~~~~~~~~~~l~~~gf~~~~~~~  223 (258)
T 2pwy_A          167 YDGVALDLMEPWKVLEKAAL-----ALKPDRFLVAYLPNITQVLELVRAAEAHPFRLERVLE  223 (258)
T ss_dssp             EEEEEEESSCGGGGHHHHHH-----HEEEEEEEEEEESCHHHHHHHHHHHTTTTEEEEEEEE
T ss_pred             cCEEEECCcCHHHHHHHHHH-----hCCCCCEEEEEeCCHHHHHHHHHHHHHCCCceEEEEE
Confidence            999998     122222222     577788776644    234566777889998766543

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=99.23  E-value=3.5e-11  Score=116.04  Aligned_cols=145  Identities=16%  Similarity=0.089  Sum_probs=98.2

Q ss_pred             hhHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeec
Q 009871          318 ESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEW  397 (523)
Q Consensus       318 ~~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw  397 (523)
                      .++..|...|.......++++|||||||||.++..+++.++.+|+++|+++.||+.+.++   +      .++...  .-
T Consensus        68 rg~~Kl~~~l~~~~~~~~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~r~---~------~rv~~~--~~  136 (291)
T 3hp7_A           68 RGGLKLEKALAVFNLSVEDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKLRQ---D------DRVRSM--EQ  136 (291)
T ss_dssp             TTHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHHHT---C------TTEEEE--CS
T ss_pred             chHHHHHHHHHhcCCCccccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHHHh---C------ccccee--cc
Confidence            456677777776655557899999999999999888888888999999999999875432   1      122111  00


Q ss_pred             CCCCcchhhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec-----C---------
Q 009871          398 GNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFR-----Q---------  463 (523)
Q Consensus       398 ~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r-----~---------  463 (523)
                      .+...+. ...++..+||+|++ |+.+.  .+..++..+.++|         +|||.+++...+.     .         
T Consensus       137 ~ni~~l~-~~~l~~~~fD~v~~-d~sf~--sl~~vL~e~~rvL---------kpGG~lv~lvkPqfe~~~~~~~~~G~vr  203 (291)
T 3hp7_A          137 YNFRYAE-PVDFTEGLPSFASI-DVSFI--SLNLILPALAKIL---------VDGGQVVALVKPQFEAGREQIGKNGIVR  203 (291)
T ss_dssp             CCGGGCC-GGGCTTCCCSEEEE-CCSSS--CGGGTHHHHHHHS---------CTTCEEEEEECGGGTSCGGGCC-CCCCC
T ss_pred             cCceecc-hhhCCCCCCCEEEE-EeeHh--hHHHHHHHHHHHc---------CcCCEEEEEECcccccChhhcCCCCccC
Confidence            1100110 01233345999997 44443  5789999999999         7799998872220     0         


Q ss_pred             ------CChhHHHHHHHHcCCEEEEEcCC
Q 009871          464 ------VDEPSMLSAATQCGFRLVDKWPS  486 (523)
Q Consensus       464 ------~~~~~~~~~~~~~gf~~~~~~~~  486 (523)
                            .....+.+.+.+.||.+..+..+
T Consensus       204 d~~~~~~~~~~v~~~~~~~Gf~v~~~~~s  232 (291)
T 3hp7_A          204 ESSIHEKVLETVTAFAVDYGFSVKGLDFS  232 (291)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTEEEEEEEEC
T ss_pred             CHHHHHHHHHHHHHHHHHCCCEEEEEEEC
Confidence                  01234667788999999988764

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=99.23  E-value=5.5e-11  Score=112.14  Aligned_cols=135  Identities=16%  Similarity=0.126  Sum_probs=94.4

Q ss_pred             CCCCCCCCeEEEECCCccHHHHHHHhc-C-CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhh
Q 009871          330 NPTIVAGKKVLELGCGCGGICSMVAAG-S-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIK  407 (523)
Q Consensus       330 ~~~~~~~~~VLElG~G~G~l~~~~a~~-~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~  407 (523)
                      ...+.++.+|||+|||+|.++..++.. + ..+|+++|+++.+++.+.+++..+      .++.+...|..+...+    
T Consensus        72 ~~~~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~------~~v~~~~~d~~~~~~~----  141 (233)
T 2ipx_A           72 QIHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR------TNIIPVIEDARHPHKY----  141 (233)
T ss_dssp             CCCCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC------TTEEEECSCTTCGGGG----
T ss_pred             eecCCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc------CCeEEEEcccCChhhh----
Confidence            334557889999999999998888887 3 469999999999999888888875      3456655555432111    


Q ss_pred             hhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecC----CChhHH----HHHHHHcCCE
Q 009871          408 EENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ----VDEPSM----LSAATQCGFR  479 (523)
Q Consensus       408 ~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~----~~~~~~----~~~~~~~gf~  479 (523)
                      +...++||+|++. +. .+.....++..+.++|         +|||.+++....+.    .....+    .+.+++.||+
T Consensus       142 ~~~~~~~D~V~~~-~~-~~~~~~~~~~~~~~~L---------kpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~  210 (233)
T 2ipx_A          142 RMLIAMVDVIFAD-VA-QPDQTRIVALNAHTFL---------RNGGHFVISIKANCIDSTASAEAVFASEVKKMQQENMK  210 (233)
T ss_dssp             GGGCCCEEEEEEC-CC-CTTHHHHHHHHHHHHE---------EEEEEEEEEEEHHHHCSSSCHHHHHHHHHHTTGGGTEE
T ss_pred             cccCCcEEEEEEc-CC-CccHHHHHHHHHHHHc---------CCCeEEEEEEcccccccCCCHHHHHHHHHHHHHHCCCc
Confidence            2235689999984 33 3444456688899999         67999998665421    111111    4666789999


Q ss_pred             EEEEcC
Q 009871          480 LVDKWP  485 (523)
Q Consensus       480 ~~~~~~  485 (523)
                      +.++..
T Consensus       211 ~~~~~~  216 (233)
T 2ipx_A          211 PQEQLT  216 (233)
T ss_dssp             EEEEEE
T ss_pred             eEEEEe
Confidence            988644

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.23  E-value=5e-12  Score=119.58  Aligned_cols=127  Identities=20%  Similarity=0.192  Sum_probs=89.2

Q ss_pred             CCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCc
Q 009871          335 AGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGF  414 (523)
Q Consensus       335 ~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~f  414 (523)
                      ++.+|||||||+|.++..++..+..+|+++|+|+.|++.|++++..++     .++.+...|+.+.     +.++.+++|
T Consensus        60 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-----~~v~~~~~d~~~~-----~~~~~~~~f  129 (236)
T 1zx0_A           60 KGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT-----HKVIPLKGLWEDV-----APTLPDGHF  129 (236)
T ss_dssp             TCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCS-----SEEEEEESCHHHH-----GGGSCTTCE
T ss_pred             CCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHHHHHhcC-----CCeEEEecCHHHh-----hcccCCCce
Confidence            677999999999988888877666699999999999999999887654     3466655554321     113456799


Q ss_pred             cEEEE-ccccC----CCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecC--------CC-----hhHHHHHHHHc
Q 009871          415 EVILG-TDVSY----IPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ--------VD-----EPSMLSAATQC  476 (523)
Q Consensus       415 D~Ii~-~d~~y----~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~--------~~-----~~~~~~~~~~~  476 (523)
                      |+|++ ...+.    +......+++.+.++|         +|||.++++.....        ..     .......+.+.
T Consensus       130 D~V~~d~~~~~~~~~~~~~~~~~l~~~~r~L---------kpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a  200 (236)
T 1zx0_A          130 DGILYDTYPLSEETWHTHQFNFIKNHAFRLL---------KPGGVLTYCNLTSWGELMKSKYSDITIMFEETQVPALLEA  200 (236)
T ss_dssp             EEEEECCCCCBGGGTTTHHHHHHHHTHHHHE---------EEEEEEEECCHHHHHHHTTTTCSCHHHHHHHHTHHHHHHT
T ss_pred             EEEEECCcccchhhhhhhhHHHHHHHHHHhc---------CCCeEEEEEecCcHHHhhchhhhhhhhhccHHHHHHHHHC
Confidence            99999 33321    1223446789999999         67999987654311        00     12345667889


Q ss_pred             CCEE
Q 009871          477 GFRL  480 (523)
Q Consensus       477 gf~~  480 (523)
                      ||+.
T Consensus       201 GF~~  204 (236)
T 1zx0_A          201 GFRR  204 (236)
T ss_dssp             TCCG
T ss_pred             CCCC
Confidence            9984

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=99.23  E-value=1.4e-11  Score=119.37  Aligned_cols=119  Identities=18%  Similarity=0.253  Sum_probs=89.1

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCC-CcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQISPSSIDIVTM  152 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~V~~  152 (523)
                      .++.+|||+|||+|..+..+++..|+.+|+|+|+|+.|++.|+++....+ .+++++++|+.+.     +++++||+|++
T Consensus       108 ~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~-----~~~~~fD~Iv~  182 (276)
T 2b3t_A          108 EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSA-----LAGQQFAMIVS  182 (276)
T ss_dssp             SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGG-----GTTCCEEEEEE
T ss_pred             cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhh-----cccCCccEEEE
Confidence            46779999999999999999988888999999999999999999864332 4799999998753     34678999999


Q ss_pred             c-ccc--------------ccc-------------eeeec--ceEEecCCeEEE---eeCHHHHHHHHHhCCCcEEEE
Q 009871          153 E-RLT--------------GKD-------------QKISE--NFYVRGDGTRAF---YFSNDFLTSLFKENGFDVEEL  197 (523)
Q Consensus       153 ~-~~~--------------~~~-------------~~~~~--~~~~~~~g~~~~---~~~~~~l~~ll~~~Gf~~~~~  197 (523)
                      . .+.              .+.             ..+..  ..+++++|.+++   +.+.+++.++++++||..+.+
T Consensus       183 npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~~~Gf~~v~~  260 (276)
T 2b3t_A          183 NPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGWQQGEAVRQAFILAGYHDVET  260 (276)
T ss_dssp             CCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCSSCHHHHHHHHHHTTCTTCCE
T ss_pred             CCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECchHHHHHHHHHHHCCCcEEEE
Confidence            2 110              000             00000  125778888776   347789999999999986443

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=99.22  E-value=1.6e-10  Score=116.32  Aligned_cols=131  Identities=11%  Similarity=0.105  Sum_probs=104.2

Q ss_pred             CCCCCeEEEECCCccHHHHHHHhcC-CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcC
Q 009871          333 IVAGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENN  411 (523)
Q Consensus       333 ~~~~~~VLElG~G~G~l~~~~a~~~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~  411 (523)
                      ..++.+|||+|||+|.++..++... ..+|+++|+ +.+++.+++++..++..   .++.+...|..+. .        .
T Consensus       188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~---~~v~~~~~d~~~~-~--------~  254 (359)
T 1x19_A          188 LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVA---DRMRGIAVDIYKE-S--------Y  254 (359)
T ss_dssp             CTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCT---TTEEEEECCTTTS-C--------C
T ss_pred             CCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcCCC---CCEEEEeCccccC-C--------C
Confidence            4567899999999999888888875 358999999 99999999999987764   4688877776543 1        1


Q ss_pred             CCccEEEEccccCCCCC--hHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec----------------------C----
Q 009871          412 EGFEVILGTDVSYIPEA--ILPLFATAKELTASSNKSLREDQQPAFILCHIFR----------------------Q----  463 (523)
Q Consensus       412 ~~fD~Ii~~d~~y~~~~--~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r----------------------~----  463 (523)
                      ..+|+|+++.++++...  ...+++.+.++|         +|||.+++.....                      .    
T Consensus       255 ~~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L---------~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  325 (359)
T 1x19_A          255 PEADAVLFCRILYSANEQLSTIMCKKAFDAM---------RSGGRLLILDMVIDDPENPNFDYLSHYILGAGMPFSVLGF  325 (359)
T ss_dssp             CCCSEEEEESCGGGSCHHHHHHHHHHHHTTC---------CTTCEEEEEEECCCCTTSCCHHHHHHHGGGGGSSCCCCCC
T ss_pred             CCCCEEEEechhccCCHHHHHHHHHHHHHhc---------CCCCEEEEEecccCCCCCchHHHHHHHHHhcCCCCcccCC
Confidence            24599999999987665  788999999999         7799998776221                      1    


Q ss_pred             CChhHHHHHHHHcCCEEEEEcC
Q 009871          464 VDEPSMLSAATQCGFRLVDKWP  485 (523)
Q Consensus       464 ~~~~~~~~~~~~~gf~~~~~~~  485 (523)
                      .+..++.+.++++||++.+++.
T Consensus       326 ~t~~e~~~ll~~aGf~~v~~~~  347 (359)
T 1x19_A          326 KEQARYKEILESLGYKDVTMVR  347 (359)
T ss_dssp             CCGGGHHHHHHHHTCEEEEEEE
T ss_pred             CCHHHHHHHHHHCCCceEEEEe
Confidence            3556788889999999988876

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=99.22  E-value=1.4e-10  Score=112.42  Aligned_cols=113  Identities=18%  Similarity=0.217  Sum_probs=86.2

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCC--CcEEEEEeeccCCccCCCCCCCceeEEE
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQISPSSIDIVT  151 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~V~  151 (523)
                      .++.+|||+|||+|.++..+++.++. +|+|+|+|+.|++.|+++...++  .+++++++|+.+.    +. +++||+|+
T Consensus       124 ~~~~~VLDlgcG~G~~~~~la~~~~~-~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~----~~-~~~fD~Vi  197 (278)
T 2frn_A          124 KPDELVVDMFAGIGHLSLPIAVYGKA-KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDF----PG-ENIADRIL  197 (278)
T ss_dssp             CTTCEEEETTCTTTTTHHHHHHHTCC-EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTC----CC-CSCEEEEE
T ss_pred             CCCCEEEEecccCCHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHh----cc-cCCccEEE
Confidence            45889999999999999999998654 79999999999999999875432  4599999999876    22 67899999


Q ss_pred             Ec------cccccceeeecceEEecCCeEEEee----------CHHHHHHHHHhCCCcEEEE
Q 009871          152 ME------RLTGKDQKISENFYVRGDGTRAFYF----------SNDFLTSLFKENGFDVEEL  197 (523)
Q Consensus       152 ~~------~~~~~~~~~~~~~~~~~~g~~~~~~----------~~~~l~~ll~~~Gf~~~~~  197 (523)
                      +.      .++....+     .++++|.+.+..          ..+++.+.++++||....+
T Consensus       198 ~~~p~~~~~~l~~~~~-----~LkpgG~l~~~~~~~~~~~~~~~~~~i~~~~~~~G~~~~~~  254 (278)
T 2frn_A          198 MGYVVRTHEFIPKALS-----IAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDVEKL  254 (278)
T ss_dssp             ECCCSSGGGGHHHHHH-----HEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEEEEE
T ss_pred             ECCchhHHHHHHHHHH-----HCCCCeEEEEEEeeccccccccHHHHHHHHHHHcCCeeEEe
Confidence            91      22222222     567777766521          3477899999999987553

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=99.22  E-value=3.4e-11  Score=111.69  Aligned_cols=123  Identities=15%  Similarity=0.271  Sum_probs=80.9

Q ss_pred             cCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEE
Q 009871           72 SGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVT  151 (523)
Q Consensus        72 ~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~  151 (523)
                      ...++.+|||+|||+|..+..+++..++.+|+|+|+|+.|++.+.+.++.. .++.++++|+.......+++ ++||+|+
T Consensus        54 ~~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~-~~v~~~~~d~~~~~~~~~~~-~~fD~V~  131 (210)
T 1nt2_A           54 KLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER-NNIIPLLFDASKPWKYSGIV-EKVDLIY  131 (210)
T ss_dssp             CCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC-SSEEEECSCTTCGGGTTTTC-CCEEEEE
T ss_pred             CCCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcC-CCeEEEEcCCCCchhhcccc-cceeEEE
Confidence            345778999999999999999998866678999999999876555443222 46888888887531101333 7899999


Q ss_pred             Eccccccce--e-eec-ceEEecCCeEEEee---------CHHHHH----HHHHhCCCcEEEEE
Q 009871          152 MERLTGKDQ--K-ISE-NFYVRGDGTRAFYF---------SNDFLT----SLFKENGFDVEELG  198 (523)
Q Consensus       152 ~~~~~~~~~--~-~~~-~~~~~~~g~~~~~~---------~~~~l~----~ll~~~Gf~~~~~~  198 (523)
                      +.-. .+..  . +.. ...++++|.+++..         +.+++.    +.++++ |.+++..
T Consensus       132 ~~~~-~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~-f~~~~~~  193 (210)
T 1nt2_A          132 QDIA-QKNQIEILKANAEFFLKEKGEVVIMVKARSIDSTAEPEEVFKSVLKEMEGD-FKIVKHG  193 (210)
T ss_dssp             ECCC-STTHHHHHHHHHHHHEEEEEEEEEEEEHHHHCTTSCHHHHHHHHHHHHHTT-SEEEEEE
T ss_pred             Eecc-ChhHHHHHHHHHHHHhCCCCEEEEEEecCCccccCCHHHHHHHHHHHHHhh-cEEeeee
Confidence            9211 1110  0 111 12688888887642         334442    237878 9877654

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=99.22  E-value=2.7e-11  Score=119.98  Aligned_cols=75  Identities=15%  Similarity=0.166  Sum_probs=62.6

Q ss_pred             hhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCC--CcEEEEEeeccCCccCCCCCCCce
Q 009871           70 YFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQISPSSI  147 (523)
Q Consensus        70 ~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~f  147 (523)
                      .+...++.+|||||||+|..+..+++.+ +++|+|+|+|+.|++.|+++....+  .++++.++|+.++    +   ++|
T Consensus        85 ~~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~---~~f  156 (318)
T 2fk8_A           85 KLDLKPGMTLLDIGCGWGTTMRRAVERF-DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF----A---EPV  156 (318)
T ss_dssp             TSCCCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGC----C---CCC
T ss_pred             hcCCCCcCEEEEEcccchHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHC----C---CCc
Confidence            3444678899999999999999999885 5689999999999999998764332  5699999999755    2   789


Q ss_pred             eEEEE
Q 009871          148 DIVTM  152 (523)
Q Consensus       148 D~V~~  152 (523)
                      |+|++
T Consensus       157 D~v~~  161 (318)
T 2fk8_A          157 DRIVS  161 (318)
T ss_dssp             SEEEE
T ss_pred             CEEEE
Confidence            99999

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.22  E-value=1.1e-11  Score=118.91  Aligned_cols=67  Identities=15%  Similarity=0.107  Sum_probs=58.7

Q ss_pred             CCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871           75 GRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM  152 (523)
Q Consensus        75 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~  152 (523)
                      ++.+|||||||+|.++..+++.  +.+|+|+|+|+.|++.|+++..   .  .+.++|+.++    ++++++||+|++
T Consensus        54 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~---~--~~~~~d~~~~----~~~~~~fD~v~~  120 (260)
T 2avn_A           54 NPCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREKGV---K--NVVEAKAEDL----PFPSGAFEAVLA  120 (260)
T ss_dssp             SCCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHTC---S--CEEECCTTSC----CSCTTCEEEEEE
T ss_pred             CCCeEEEeCCCcCHHHHHHHHc--CCeEEEEeCCHHHHHHHHhhcC---C--CEEECcHHHC----CCCCCCEEEEEE
Confidence            6789999999999999999987  5689999999999999998754   1  2889999877    567889999999

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=99.21  E-value=4.9e-11  Score=119.51  Aligned_cols=115  Identities=18%  Similarity=0.256  Sum_probs=89.2

Q ss_pred             HHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCc
Q 009871          323 MAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDH  402 (523)
Q Consensus       323 la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~  402 (523)
                      ..+.+.......++.+|||||||+|.++..+++.++.+|+++|+++ +++.+++++..|+..   .++.+...|+.+.. 
T Consensus        38 y~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~l~---~~v~~~~~d~~~~~-  112 (348)
T 2y1w_A           38 YQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLT---DRIVVIPGKVEEVS-  112 (348)
T ss_dssp             HHHHHHHTGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHTTCT---TTEEEEESCTTTCC-
T ss_pred             HHHHHHhccccCCcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHH-HHHHHHHHHHHcCCC---CcEEEEEcchhhCC-
Confidence            3445555555568899999999999988888888777999999996 889999999998875   46777777665431 


Q ss_pred             chhhhhhcCCCccEEEEccccCC--CCChHHHHHHHHHHhhccCCCCCCCCCcEEEEE
Q 009871          403 IEAIKEENNEGFEVILGTDVSYI--PEAILPLFATAKELTASSNKSLREDQQPAFILC  458 (523)
Q Consensus       403 ~~~~~~~~~~~fD~Ii~~d~~y~--~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~  458 (523)
                            + +++||+|++..+.++  .+.....+..+.++|         +|+|.++++
T Consensus       113 ------~-~~~~D~Ivs~~~~~~~~~~~~~~~l~~~~~~L---------kpgG~li~~  154 (348)
T 2y1w_A          113 ------L-PEQVDIIISEPMGYMLFNERMLESYLHAKKYL---------KPSGNMFPT  154 (348)
T ss_dssp             ------C-SSCEEEEEECCCBTTBTTTSHHHHHHHGGGGE---------EEEEEEESC
T ss_pred             ------C-CCceeEEEEeCchhcCChHHHHHHHHHHHhhc---------CCCeEEEEe
Confidence                  1 358999999888765  345667777788899         679998854

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=99.21  E-value=1.4e-11  Score=117.79  Aligned_cols=113  Identities=13%  Similarity=0.137  Sum_probs=85.8

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEEEc
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTME  153 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~  153 (523)
                      .++.+|||+|||+|.++..+++.++  +|+|+|+|+.|++.|+++...++..+++.++|+.+.     +++++||+|++.
T Consensus       119 ~~~~~VLDiGcG~G~l~~~la~~g~--~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~~-----~~~~~fD~Vv~n  191 (254)
T 2nxc_A          119 RPGDKVLDLGTGSGVLAIAAEKLGG--KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAA-----LPFGPFDLLVAN  191 (254)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHTTC--EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHH-----GGGCCEEEEEEE
T ss_pred             CCCCEEEEecCCCcHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhhc-----CcCCCCCEEEEC
Confidence            4678999999999999999988754  899999999999999998754433388899888752     346789999991


Q ss_pred             -------cccccceeeecceEEecCCeEEE----eeCHHHHHHHHHhCCCcEEEEE
Q 009871          154 -------RLTGKDQKISENFYVRGDGTRAF----YFSNDFLTSLFKENGFDVEELG  198 (523)
Q Consensus       154 -------~~~~~~~~~~~~~~~~~~g~~~~----~~~~~~l~~ll~~~Gf~~~~~~  198 (523)
                             .+.....+     .++++|.++.    ..+.+++.++++++||.++++.
T Consensus       192 ~~~~~~~~~l~~~~~-----~LkpgG~lils~~~~~~~~~v~~~l~~~Gf~~~~~~  242 (254)
T 2nxc_A          192 LYAELHAALAPRYRE-----ALVPGGRALLTGILKDRAPLVREAMAGAGFRPLEEA  242 (254)
T ss_dssp             CCHHHHHHHHHHHHH-----HEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEE
T ss_pred             CcHHHHHHHHHHHHH-----HcCCCCEEEEEeeccCCHHHHHHHHHHCCCEEEEEe
Confidence                   11122222     4667776654    2367899999999999987664

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=99.21  E-value=6.4e-11  Score=121.80  Aligned_cols=142  Identities=13%  Similarity=0.159  Sum_probs=104.7

Q ss_pred             HHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCC
Q 009871          321 HLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNR  400 (523)
Q Consensus       321 ~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~  400 (523)
                      ..+++.+.......++.+|||+|||+|.++..++..+. +|+++|+|+.+++.++++    +..       .....+.. 
T Consensus        93 ~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~g~-~v~gvD~s~~~~~~a~~~----~~~-------~~~~~~~~-  159 (416)
T 4e2x_A           93 AMLARDFLATELTGPDPFIVEIGCNDGIMLRTIQEAGV-RHLGFEPSSGVAAKAREK----GIR-------VRTDFFEK-  159 (416)
T ss_dssp             HHHHHHHHHTTTCSSSCEEEEETCTTTTTHHHHHHTTC-EEEEECCCHHHHHHHHTT----TCC-------EECSCCSH-
T ss_pred             HHHHHHHHHHhCCCCCCEEEEecCCCCHHHHHHHHcCC-cEEEECCCHHHHHHHHHc----CCC-------cceeeech-
Confidence            34566666665566788999999999988888888765 899999999999998865    221       11101110 


Q ss_pred             CcchhhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee------------------c
Q 009871          401 DHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIF------------------R  462 (523)
Q Consensus       401 ~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~------------------r  462 (523)
                      .....+ ++.+++||+|++..++++..+...+++.+.++|         +|||.+++....                  +
T Consensus       160 ~~~~~l-~~~~~~fD~I~~~~vl~h~~d~~~~l~~~~r~L---------kpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~  229 (416)
T 4e2x_A          160 ATADDV-RRTEGPANVIYAANTLCHIPYVQSVLEGVDALL---------APDGVFVFEDPYLGDIVAKTSFDQIFDEHFF  229 (416)
T ss_dssp             HHHHHH-HHHHCCEEEEEEESCGGGCTTHHHHHHHHHHHE---------EEEEEEEEEEECHHHHHHHTCGGGCSTTCCE
T ss_pred             hhHhhc-ccCCCCEEEEEECChHHhcCCHHHHHHHHHHHc---------CCCeEEEEEeCChHHhhhhcchhhhhhhhhh
Confidence            111111 234579999999999999999999999999999         679999987543                  1


Q ss_pred             CCChhHHHHHHHHcCCEEEEEcC
Q 009871          463 QVDEPSMLSAATQCGFRLVDKWP  485 (523)
Q Consensus       463 ~~~~~~~~~~~~~~gf~~~~~~~  485 (523)
                      ..+...+...++++||++.++..
T Consensus       230 ~~s~~~l~~ll~~aGf~~~~~~~  252 (416)
T 4e2x_A          230 LFSATSVQGMAQRCGFELVDVQR  252 (416)
T ss_dssp             ECCHHHHHHHHHHTTEEEEEEEE
T ss_pred             cCCHHHHHHHHHHcCCEEEEEEE
Confidence            12345788889999999988765

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=99.21  E-value=3.8e-11  Score=107.10  Aligned_cols=108  Identities=19%  Similarity=0.151  Sum_probs=80.8

Q ss_pred             CCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCc
Q 009871          335 AGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGF  414 (523)
Q Consensus       335 ~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~f  414 (523)
                      ++.+|||+|||+|.++..+++.++. |+++|+|+.+++.+++|+..++.     ++.+...|+.+.  .... .....+|
T Consensus        41 ~~~~vLD~GcG~G~~~~~l~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~-----~~~~~~~d~~~~--~~~~-~~~~~~~  111 (171)
T 1ws6_A           41 RRGRFLDPFAGSGAVGLEAASEGWE-AVLVEKDPEAVRLLKENVRRTGL-----GARVVALPVEVF--LPEA-KAQGERF  111 (171)
T ss_dssp             TCCEEEEETCSSCHHHHHHHHTTCE-EEEECCCHHHHHHHHHHHHHHTC-----CCEEECSCHHHH--HHHH-HHTTCCE
T ss_pred             CCCeEEEeCCCcCHHHHHHHHCCCe-EEEEeCCHHHHHHHHHHHHHcCC-----ceEEEeccHHHH--HHhh-hccCCce
Confidence            6789999999999888888888765 99999999999999999998765     345554444321  1110 1113489


Q ss_pred             cEEEEccccCCCCChHHHHHHHH--HHhhccCCCCCCCCCcEEEEEEeec
Q 009871          415 EVILGTDVSYIPEAILPLFATAK--ELTASSNKSLREDQQPAFILCHIFR  462 (523)
Q Consensus       415 D~Ii~~d~~y~~~~~~~l~~~l~--~ll~~~~~~~~~~~~g~~~l~~~~r  462 (523)
                      |+|+++.+..  ...+.+++.+.  ++|         +|+|.++++...+
T Consensus       112 D~i~~~~~~~--~~~~~~~~~~~~~~~L---------~~gG~~~~~~~~~  150 (171)
T 1ws6_A          112 TVAFMAPPYA--MDLAALFGELLASGLV---------EAGGLYVLQHPKD  150 (171)
T ss_dssp             EEEEECCCTT--SCTTHHHHHHHHHTCE---------EEEEEEEEEEETT
T ss_pred             EEEEECCCCc--hhHHHHHHHHHhhccc---------CCCcEEEEEeCCc
Confidence            9999976644  67778888888  788         6799998887654

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=99.21  E-value=2.2e-10  Score=106.14  Aligned_cols=132  Identities=15%  Similarity=0.155  Sum_probs=87.9

Q ss_pred             CCCCCeEEEECCCccHHHHHHHhcC-CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcC
Q 009871          333 IVAGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENN  411 (523)
Q Consensus       333 ~~~~~~VLElG~G~G~l~~~~a~~~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~  411 (523)
                      ..++.+|||||||+|.++..++... ..+|+++|+|+.|++.+.+++...      .++.+...|...   .....++ .
T Consensus        55 ~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~------~~v~~~~~d~~~---~~~~~~~-~  124 (210)
T 1nt2_A           55 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER------NNIIPLLFDASK---PWKYSGI-V  124 (210)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC------SSEEEECSCTTC---GGGTTTT-C
T ss_pred             CCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcC------CCeEEEEcCCCC---chhhccc-c
Confidence            4578899999999998888888764 358999999999988777665542      234443333222   1110122 3


Q ss_pred             CCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecC----CChhHHH----HHHHHcCCEEEEE
Q 009871          412 EGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ----VDEPSML----SAATQCGFRLVDK  483 (523)
Q Consensus       412 ~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~----~~~~~~~----~~~~~~gf~~~~~  483 (523)
                      ++||+|+++ + ..+.....+++.+.++|         +|||.++++...+.    ...++++    +.+++. |++.+.
T Consensus       125 ~~fD~V~~~-~-~~~~~~~~~l~~~~r~L---------kpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~-f~~~~~  192 (210)
T 1nt2_A          125 EKVDLIYQD-I-AQKNQIEILKANAEFFL---------KEKGEVVIMVKARSIDSTAEPEEVFKSVLKEMEGD-FKIVKH  192 (210)
T ss_dssp             CCEEEEEEC-C-CSTTHHHHHHHHHHHHE---------EEEEEEEEEEEHHHHCTTSCHHHHHHHHHHHHHTT-SEEEEE
T ss_pred             cceeEEEEe-c-cChhHHHHHHHHHHHHh---------CCCCEEEEEEecCCccccCCHHHHHHHHHHHHHhh-cEEeee
Confidence            689999986 2 23333445689999999         67999999864432    2233433    336777 999888


Q ss_pred             cCC
Q 009871          484 WPS  486 (523)
Q Consensus       484 ~~~  486 (523)
                      ...
T Consensus       193 ~~~  195 (210)
T 1nt2_A          193 GSL  195 (210)
T ss_dssp             EEC
T ss_pred             ecC
Confidence            653

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=99.21  E-value=1.3e-10  Score=111.77  Aligned_cols=106  Identities=10%  Similarity=0.049  Sum_probs=81.7

Q ss_pred             CCCCCCCeEEEECCCccHHHHHHHh-cCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhh
Q 009871          331 PTIVAGKKVLELGCGCGGICSMVAA-GSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEE  409 (523)
Q Consensus       331 ~~~~~~~~VLElG~G~G~l~~~~a~-~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~  409 (523)
                      ..+.++.+|||||||+|.++..+++ ....+|+++|+|++|++.|++|+...+.    .++.+...|-.+         +
T Consensus       118 a~l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl----~~v~~v~gDa~~---------l  184 (298)
T 3fpf_A          118 GRFRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGV----DGVNVITGDETV---------I  184 (298)
T ss_dssp             TTCCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTC----CSEEEEESCGGG---------G
T ss_pred             cCCCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCC----CCeEEEECchhh---------C
Confidence            3456899999999999877655444 3556899999999999999999988765    356665443221         2


Q ss_pred             cCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee
Q 009871          410 NNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIF  461 (523)
Q Consensus       410 ~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~  461 (523)
                      ++++||+|+.+..   ......+++.+.+.|         +|||++++....
T Consensus       185 ~d~~FDvV~~~a~---~~d~~~~l~el~r~L---------kPGG~Lvv~~~~  224 (298)
T 3fpf_A          185 DGLEFDVLMVAAL---AEPKRRVFRNIHRYV---------DTETRIIYRTYT  224 (298)
T ss_dssp             GGCCCSEEEECTT---CSCHHHHHHHHHHHC---------CTTCEEEEEECC
T ss_pred             CCCCcCEEEECCC---ccCHHHHHHHHHHHc---------CCCcEEEEEcCc
Confidence            3578999998644   467889999999999         789999987643

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=99.21  E-value=9.8e-11  Score=116.72  Aligned_cols=132  Identities=13%  Similarity=0.068  Sum_probs=103.8

Q ss_pred             CCCCeEEEECCCccHHHHHHHhcC-CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCC
Q 009871          334 VAGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNE  412 (523)
Q Consensus       334 ~~~~~VLElG~G~G~l~~~~a~~~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~  412 (523)
                      .++.+|||+|||+|.++..++... ..+|+++|++ .+++.+++++..+++.   .++.+...|+.+.       ++ +.
T Consensus       164 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~~~---~~v~~~~~d~~~~-------~~-~~  231 (335)
T 2r3s_A          164 IEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQGVA---SRYHTIAGSAFEV-------DY-GN  231 (335)
T ss_dssp             CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHTCG---GGEEEEESCTTTS-------CC-CS
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcCCC---cceEEEecccccC-------CC-CC
Confidence            467899999999998888888774 4589999999 9999999999887664   4688887776543       11 23


Q ss_pred             CccEEEEccccCCC--CChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecC-------------------------CC
Q 009871          413 GFEVILGTDVSYIP--EAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ-------------------------VD  465 (523)
Q Consensus       413 ~fD~Ii~~d~~y~~--~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~-------------------------~~  465 (523)
                      .||+|++..++++.  +....+++.+.++|         +|||.+++......                         .+
T Consensus       232 ~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L---------~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t  302 (335)
T 2r3s_A          232 DYDLVLLPNFLHHFDVATCEQLLRKIKTAL---------AVEGKVIVFDFIPNSDRITPPDAAAFSLVMLATTPNGDAYT  302 (335)
T ss_dssp             CEEEEEEESCGGGSCHHHHHHHHHHHHHHE---------EEEEEEEEEECCCCTTSSCSHHHHHHHHHHHHHSSSCCCCC
T ss_pred             CCcEEEEcchhccCCHHHHHHHHHHHHHhC---------CCCcEEEEEeecCCCCcCCchHHHHHHHHHHeeCCCCCcCC
Confidence            59999999999886  45579999999999         67998888765422                         12


Q ss_pred             hhHHHHHHHHcCCEEEEEcCC
Q 009871          466 EPSMLSAATQCGFRLVDKWPS  486 (523)
Q Consensus       466 ~~~~~~~~~~~gf~~~~~~~~  486 (523)
                      ..++.+.++++||+..++...
T Consensus       303 ~~~~~~ll~~aGf~~~~~~~~  323 (335)
T 2r3s_A          303 FAEYESMFSNAGFSHSQLHSL  323 (335)
T ss_dssp             HHHHHHHHHHTTCSEEEEECC
T ss_pred             HHHHHHHHHHCCCCeeeEEEC
Confidence            456777888999999988763

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=99.21  E-value=6.4e-12  Score=111.99  Aligned_cols=106  Identities=11%  Similarity=0.079  Sum_probs=78.4

Q ss_pred             CCCeEEEECCCccHHHHHHHhcC-CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCC
Q 009871          335 AGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG  413 (523)
Q Consensus       335 ~~~~VLElG~G~G~l~~~~a~~~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~  413 (523)
                      +..+|||||||+|.++..++... ..+|+++|+|+.|++.+++|+..++..   .++.+.  |     ...   ..++++
T Consensus        49 ~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~---~~v~~~--d-----~~~---~~~~~~  115 (200)
T 3fzg_A           49 HVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTT---IKYRFL--N-----KES---DVYKGT  115 (200)
T ss_dssp             CCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCS---SEEEEE--C-----CHH---HHTTSE
T ss_pred             CCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCC---ccEEEe--c-----ccc---cCCCCC
Confidence            46799999999998888887762 339999999999999999999998875   345552  1     111   234678


Q ss_pred             ccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecC
Q 009871          414 FEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ  463 (523)
Q Consensus       414 fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~  463 (523)
                      ||+|++..+++.-+..+..+..+.+.|         +|+|.| +++..|.
T Consensus       116 ~DvVLa~k~LHlL~~~~~al~~v~~~L---------~pggvf-ISfptks  155 (200)
T 3fzg_A          116 YDVVFLLKMLPVLKQQDVNILDFLQLF---------HTQNFV-ISFPIKS  155 (200)
T ss_dssp             EEEEEEETCHHHHHHTTCCHHHHHHTC---------EEEEEE-EEEECCC
T ss_pred             cChhhHhhHHHhhhhhHHHHHHHHHHh---------CCCCEE-EEeChHH
Confidence            999999999887665556666788888         446554 5555443

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=99.21  E-value=3.5e-10  Score=114.73  Aligned_cols=170  Identities=18%  Similarity=0.181  Sum_probs=109.4

Q ss_pred             eEEEEEEcCceEEEEEecccccccCCCcccccchhHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEE
Q 009871          285 EMIEVNLRDRSFKIEVLSKEYQHTCRSTGLMLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVAT  364 (523)
Q Consensus       285 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~G~~~W~~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~  364 (523)
                      +.+.+..+|..+.+....      .-.+|... +. .....++...    ++.+|||+|||+|.++..++.. +.+|+++
T Consensus       171 ~~~~~~e~g~~f~i~~~~------~~~~g~f~-~~-~~~~~~~~~~----~~~~VLDlg~G~G~~~~~la~~-~~~v~~v  237 (382)
T 1wxx_A          171 ERVQVQEGRVRYLVDLRA------GQKTGAYL-DQ-RENRLYMERF----RGERALDVFSYAGGFALHLALG-FREVVAV  237 (382)
T ss_dssp             SEEEEEETTEEEEEECST------TSCCCCCG-GG-HHHHHHGGGC----CEEEEEEETCTTTHHHHHHHHH-EEEEEEE
T ss_pred             ceEEEEECCEEEEEEchh------cccCcccc-ch-HHHHHHHHhc----CCCeEEEeeeccCHHHHHHHHh-CCEEEEE
Confidence            355566677666666322      12344322 11 1122333322    6789999999999999888887 6789999


Q ss_pred             cCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCccEEEEccccCCC---------CChHHHHHH
Q 009871          365 DGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIP---------EAILPLFAT  435 (523)
Q Consensus       365 D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~---------~~~~~l~~~  435 (523)
                      |+++.+++.+++|+..|++.    .+.+...|..+.  ...+ .....+||+|++....+..         .....++..
T Consensus       238 D~s~~~~~~a~~n~~~n~~~----~~~~~~~d~~~~--~~~~-~~~~~~fD~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~  310 (382)
T 1wxx_A          238 DSSAEALRRAEENARLNGLG----NVRVLEANAFDL--LRRL-EKEGERFDLVVLDPPAFAKGKKDVERAYRAYKEVNLR  310 (382)
T ss_dssp             ESCHHHHHHHHHHHHHTTCT----TEEEEESCHHHH--HHHH-HHTTCCEEEEEECCCCSCCSTTSHHHHHHHHHHHHHH
T ss_pred             ECCHHHHHHHHHHHHHcCCC----CceEEECCHHHH--HHHH-HhcCCCeeEEEECCCCCCCChhHHHHHHHHHHHHHHH
Confidence            99999999999999999874    255555443221  1100 0114689999985433332         235667788


Q ss_pred             HHHHhhccCCCCCCCCCcEEEEEEeecCCChhHHH----HHHHHcCCEEEEE
Q 009871          436 AKELTASSNKSLREDQQPAFILCHIFRQVDEPSML----SAATQCGFRLVDK  483 (523)
Q Consensus       436 l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~~----~~~~~~gf~~~~~  483 (523)
                      +.++|         +|||.++++........+.+.    +.+.+.|..+..+
T Consensus       311 ~~~~L---------kpgG~l~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~i  353 (382)
T 1wxx_A          311 AIKLL---------KEGGILATASCSHHMTEPLFYAMVAEAAQDAHRLLRVV  353 (382)
T ss_dssp             HHHTE---------EEEEEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             HHHhc---------CCCCEEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence            88888         679999998877666654443    3455677555444

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=99.21  E-value=8e-11  Score=109.81  Aligned_cols=128  Identities=12%  Similarity=0.092  Sum_probs=88.8

Q ss_pred             CCCeEEEECCCccHHHHHHHhcCC-CEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhh-hhcCC
Q 009871          335 AGKKVLELGCGCGGICSMVAAGSA-DLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIK-EENNE  412 (523)
Q Consensus       335 ~~~~VLElG~G~G~l~~~~a~~~~-~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~-~~~~~  412 (523)
                      .+.+|||||||+|.++..+|+..+ ..|+++|+++.+++.+++|+..+++.    ++.+...|..+     .+. .++++
T Consensus        34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~----nv~~~~~Da~~-----~l~~~~~~~  104 (218)
T 3dxy_A           34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLS----NLRVMCHDAVE-----VLHKMIPDN  104 (218)
T ss_dssp             CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCS----SEEEECSCHHH-----HHHHHSCTT
T ss_pred             CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCC----cEEEEECCHHH-----HHHHHcCCC
Confidence            567999999999998888888754 58999999999999999999987763    46655433211     111 14567


Q ss_pred             CccEEEEc--cccCCCCCh------HHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhHHHHHHHH-cCCEEE
Q 009871          413 GFEVILGT--DVSYIPEAI------LPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQ-CGFRLV  481 (523)
Q Consensus       413 ~fD~Ii~~--d~~y~~~~~------~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~~~~~~~-~gf~~~  481 (523)
                      +||.|++.  |........      +.+++.+.++|         +|||.+++....... ...+.+.+.. .+|+..
T Consensus       105 ~~d~v~~~~~~p~~~~~~~~rr~~~~~~l~~~~r~L---------kpGG~l~i~td~~~~-~~~~~~~~~~~~~~~~~  172 (218)
T 3dxy_A          105 SLRMVQLFFPDPWHKARHNKRRIVQVPFAELVKSKL---------QLGGVFHMATDWEPY-AEHMLEVMSSIDGYKNL  172 (218)
T ss_dssp             CEEEEEEESCCCCCSGGGGGGSSCSHHHHHHHHHHE---------EEEEEEEEEESCHHH-HHHHHHHHHTSTTEEEC
T ss_pred             ChheEEEeCCCCccchhhhhhhhhhHHHHHHHHHHc---------CCCcEEEEEeCCHHH-HHHHHHHHHhCCCcccc
Confidence            99999987  443332222      35999999999         679999998754321 1234444444 356543

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.20  E-value=2.5e-10  Score=108.86  Aligned_cols=102  Identities=20%  Similarity=0.153  Sum_probs=76.4

Q ss_pred             CCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCC
Q 009871          334 VAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG  413 (523)
Q Consensus       334 ~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~  413 (523)
                      .++.+|||+|||+|.++..++..+ .+|+++|+|+.+++.+++++..++.     ++.+...|+.+.       +. +.+
T Consensus        40 ~~~~~vLDlGcG~G~~~~~l~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~-----~v~~~~~d~~~~-------~~-~~~  105 (252)
T 1wzn_A           40 REVRRVLDLACGTGIPTLELAERG-YEVVGLDLHEEMLRVARRKAKERNL-----KIEFLQGDVLEI-------AF-KNE  105 (252)
T ss_dssp             SCCCEEEEETCTTCHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTC-----CCEEEESCGGGC-------CC-CSC
T ss_pred             cCCCEEEEeCCCCCHHHHHHHHCC-CeEEEEECCHHHHHHHHHHHHhcCC-----ceEEEECChhhc-------cc-CCC
Confidence            467899999999998888888875 4899999999999999999987653     355555555432       11 358


Q ss_pred             ccEEEEc-ccc-C-CCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEE
Q 009871          414 FEVILGT-DVS-Y-IPEAILPLFATAKELTASSNKSLREDQQPAFILC  458 (523)
Q Consensus       414 fD~Ii~~-d~~-y-~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~  458 (523)
                      ||+|++. ..+ | ..+....+++.+.++|         +|||.+++.
T Consensus       106 fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L---------~pgG~li~~  144 (252)
T 1wzn_A          106 FDAVTMFFSTIMYFDEEDLRKLFSKVAEAL---------KPGGVFITD  144 (252)
T ss_dssp             EEEEEECSSGGGGSCHHHHHHHHHHHHHHE---------EEEEEEEEE
T ss_pred             ccEEEEcCCchhcCCHHHHHHHHHHHHHHc---------CCCeEEEEe
Confidence            9999975 222 2 2346788999999999         567777654

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=99.20  E-value=3.9e-11  Score=116.21  Aligned_cols=119  Identities=18%  Similarity=0.122  Sum_probs=90.2

Q ss_pred             hcCCCCCeEEEECCCccccHHHHHhh-CCCCEEEEEeCCHHHHHHHHhccccC--CCcEEEEEeeccCCccCCCCCCCce
Q 009871           71 FSGAGRKDVLEVGCGAGNTIFPLIAA-YPDVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISDDLSRQISPSSI  147 (523)
Q Consensus        71 ~~~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~v~gvD~S~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~~~~~~~~~~f  147 (523)
                      +...++.+|||+|||+|..+..+++. +|+.+|+|+|+|+.+++.|+++....  ..++++.++|+.+     ++++++|
T Consensus       106 ~~~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~-----~~~~~~f  180 (275)
T 1yb2_A          106 CGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIAD-----FISDQMY  180 (275)
T ss_dssp             CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTT-----CCCSCCE
T ss_pred             cCCCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhc-----cCcCCCc
Confidence            34467889999999999999999998 77889999999999999999986543  3579999999975     3456789


Q ss_pred             eEEEE-----ccccccceeeecceEEecCCeEEEee----CHHHHHHHHHhCCCcEEEEEe
Q 009871          148 DIVTM-----ERLTGKDQKISENFYVRGDGTRAFYF----SNDFLTSLFKENGFDVEELGL  199 (523)
Q Consensus       148 D~V~~-----~~~~~~~~~~~~~~~~~~~g~~~~~~----~~~~l~~ll~~~Gf~~~~~~~  199 (523)
                      |+|++     ..++....+     .++++|.+++..    ..+++.+.++++||..++...
T Consensus       181 D~Vi~~~~~~~~~l~~~~~-----~LkpgG~l~i~~~~~~~~~~~~~~l~~~Gf~~~~~~~  236 (275)
T 1yb2_A          181 DAVIADIPDPWNHVQKIAS-----MMKPGSVATFYLPNFDQSEKTVLSLSASGMHHLETVE  236 (275)
T ss_dssp             EEEEECCSCGGGSHHHHHH-----TEEEEEEEEEEESSHHHHHHHHHHSGGGTEEEEEEEE
T ss_pred             cEEEEcCcCHHHHHHHHHH-----HcCCCCEEEEEeCCHHHHHHHHHHHHHCCCeEEEEEE
Confidence            99999     122222222     577888776643    235677778889998776643

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=99.20  E-value=3.5e-11  Score=115.82  Aligned_cols=77  Identities=12%  Similarity=-0.001  Sum_probs=64.1

Q ss_pred             hhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC-CCcEEEEEeeccCCccCCCCCCCcee
Q 009871           70 YFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT-ETRVSTFVCDLISDDLSRQISPSSID  148 (523)
Q Consensus        70 ~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~-~~~v~~~~~d~~~~~~~~~~~~~~fD  148 (523)
                      ++...++.+|||||||+|..+..++.+.++++|+|+|+|++|++.|+++.... ..+++++++|+.++      ++++||
T Consensus       117 la~l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l------~d~~FD  190 (298)
T 3fpf_A          117 LGRFRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVI------DGLEFD  190 (298)
T ss_dssp             HTTCCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGG------GGCCCS
T ss_pred             HcCCCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhC------CCCCcC
Confidence            45667899999999999988766666666899999999999999999976432 26899999999864      368899


Q ss_pred             EEEE
Q 009871          149 IVTM  152 (523)
Q Consensus       149 ~V~~  152 (523)
                      +|++
T Consensus       191 vV~~  194 (298)
T 3fpf_A          191 VLMV  194 (298)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9998

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=99.20  E-value=1.2e-10  Score=117.41  Aligned_cols=132  Identities=10%  Similarity=0.036  Sum_probs=102.7

Q ss_pred             CCCCCeEEEECCCccHHHHHHHhcCC-CEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcC
Q 009871          333 IVAGKKVLELGCGCGGICSMVAAGSA-DLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENN  411 (523)
Q Consensus       333 ~~~~~~VLElG~G~G~l~~~~a~~~~-~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~  411 (523)
                      ..++.+|||+|||+|.++..++..++ .+++++|+ +.+++.+++|+..+++.   .++.+...|+.+.        + +
T Consensus       181 ~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~---~~v~~~~~d~~~~--------~-~  247 (360)
T 1tw3_A          181 WTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLS---DRVDVVEGDFFEP--------L-P  247 (360)
T ss_dssp             CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCT---TTEEEEECCTTSC--------C-S
T ss_pred             CccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcCCC---CceEEEeCCCCCC--------C-C
Confidence            44678999999999988888888753 48999999 99999999999987764   4688887777542        1 2


Q ss_pred             CCccEEEEccccCCCCCh--HHHHHHHHHHhhccCCCCCCCCCcEEEEEEee-cC-----------------------CC
Q 009871          412 EGFEVILGTDVSYIPEAI--LPLFATAKELTASSNKSLREDQQPAFILCHIF-RQ-----------------------VD  465 (523)
Q Consensus       412 ~~fD~Ii~~d~~y~~~~~--~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~-r~-----------------------~~  465 (523)
                      ..||+|+++.++++....  ..+++.+.++|         +|||.+++.... ..                       .+
T Consensus       248 ~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L---------~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t  318 (360)
T 1tw3_A          248 RKADAIILSFVLLNWPDHDAVRILTRCAEAL---------EPGGRILIHERDDLHENSFNEQFTELDLRMLVFLGGALRT  318 (360)
T ss_dssp             SCEEEEEEESCGGGSCHHHHHHHHHHHHHTE---------EEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCCCCB
T ss_pred             CCccEEEEcccccCCCHHHHHHHHHHHHHhc---------CCCcEEEEEEEeccCCCCCcchhhhccHHHhhhcCCcCCC
Confidence            359999999999775544  58999999999         679999887544 10                       13


Q ss_pred             hhHHHHHHHHcCCEEEEEcCC
Q 009871          466 EPSMLSAATQCGFRLVDKWPS  486 (523)
Q Consensus       466 ~~~~~~~~~~~gf~~~~~~~~  486 (523)
                      .+++.+.++++||++.+++..
T Consensus       319 ~~e~~~ll~~aGf~~~~~~~~  339 (360)
T 1tw3_A          319 REKWDGLAASAGLVVEEVRQL  339 (360)
T ss_dssp             HHHHHHHHHHTTEEEEEEEEE
T ss_pred             HHHHHHHHHHCCCeEEEEEeC
Confidence            345677888999999988763

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=99.20  E-value=1.4e-10  Score=116.91  Aligned_cols=133  Identities=9%  Similarity=0.160  Sum_probs=102.4

Q ss_pred             CCCeEEEECCCccHHHHHHHhcC-CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCC
Q 009871          335 AGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG  413 (523)
Q Consensus       335 ~~~~VLElG~G~G~l~~~~a~~~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~  413 (523)
                      ...+|||||||+|.++..+++.. ..+|+++|+ +.+++.+++++...+..   .++.+...|..+...     ++ +.+
T Consensus       179 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~---~~v~~~~~d~~~~~~-----~~-p~~  248 (363)
T 3dp7_A          179 HPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLSGS---ERIHGHGANLLDRDV-----PF-PTG  248 (363)
T ss_dssp             CCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCTTG---GGEEEEECCCCSSSC-----CC-CCC
T ss_pred             CCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcCcc---cceEEEEccccccCC-----CC-CCC
Confidence            55799999999998888888864 448999999 99999999998876553   578888877665310     12 258


Q ss_pred             ccEEEEccccCCCC--ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecC----------------------------
Q 009871          414 FEVILGTDVSYIPE--AILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ----------------------------  463 (523)
Q Consensus       414 fD~Ii~~d~~y~~~--~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~----------------------------  463 (523)
                      ||+|++..++++..  ....+++.+.+.|         +|||.+++......                            
T Consensus       249 ~D~v~~~~vlh~~~~~~~~~~l~~~~~~L---------~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (363)
T 3dp7_A          249 FDAVWMSQFLDCFSEEEVISILTRVAQSI---------GKDSKVYIMETLWDRQRYETASYCLTQISLYFTAMANGNSKM  319 (363)
T ss_dssp             CSEEEEESCSTTSCHHHHHHHHHHHHHHC---------CTTCEEEEEECCTTSCSSHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             cCEEEEechhhhCCHHHHHHHHHHHHHhc---------CCCcEEEEEeeccCCccccchhhHHHHhhhhHHhhhCCCCcc
Confidence            99999999998654  3467899999999         77999988664321                            


Q ss_pred             CChhHHHHHHHHcCCEEEEEcCC
Q 009871          464 VDEPSMLSAATQCGFRLVDKWPS  486 (523)
Q Consensus       464 ~~~~~~~~~~~~~gf~~~~~~~~  486 (523)
                      .+..++.+.++++||++.+++..
T Consensus       320 ~t~~e~~~ll~~AGf~~v~~~~~  342 (363)
T 3dp7_A          320 FHSDDLIRCIENAGLEVEEIQDN  342 (363)
T ss_dssp             CCHHHHHHHHHTTTEEESCCCCC
T ss_pred             cCHHHHHHHHHHcCCeEEEEEeC
Confidence            13456777888899999888753

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=99.19  E-value=6.8e-11  Score=106.59  Aligned_cols=123  Identities=14%  Similarity=0.150  Sum_probs=87.0

Q ss_pred             hhhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCC-CcEEEEEeeccCCccCCCCCCCce
Q 009871           69 RYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQISPSSI  147 (523)
Q Consensus        69 ~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~f  147 (523)
                      +.+...++.+|||+|||+|.++..+++  ++.+|+|+|+|+.|++.|+++....+ .+++++++|+.+     ++++++|
T Consensus        29 ~~~~~~~~~~vLdiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~-----~~~~~~~  101 (183)
T 2yxd_A           29 GKLNLNKDDVVVDVGCGSGGMTVEIAK--RCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAED-----VLDKLEF  101 (183)
T ss_dssp             HHHCCCTTCEEEEESCCCSHHHHHHHT--TSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHH-----HGGGCCC
T ss_pred             HHcCCCCCCEEEEeCCCCCHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccc-----cccCCCC
Confidence            344446778999999999999999988  57889999999999999999764332 579999999875     2345789


Q ss_pred             eEEEEcccccccee-eecceEEecCCeEEEee----CHHHHHHHHHhCCCcEEEEEeE
Q 009871          148 DIVTMERLTGKDQK-ISENFYVRGDGTRAFYF----SNDFLTSLFKENGFDVEELGLC  200 (523)
Q Consensus       148 D~V~~~~~~~~~~~-~~~~~~~~~~g~~~~~~----~~~~l~~ll~~~Gf~~~~~~~~  200 (523)
                      |+|++... ..... +....-. ++|.+++..    ...++.+.++++||.+..+...
T Consensus       102 D~i~~~~~-~~~~~~l~~~~~~-~gG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~  157 (183)
T 2yxd_A          102 NKAFIGGT-KNIEKIIEILDKK-KINHIVANTIVLENAAKIINEFESRGYNVDAVNVF  157 (183)
T ss_dssp             SEEEECSC-SCHHHHHHHHHHT-TCCEEEEEESCHHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred             cEEEECCc-ccHHHHHHHHhhC-CCCEEEEEecccccHHHHHHHHHHcCCeEEEEEee
Confidence            99998322 11111 1000011 677776543    3556888999999876655433

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=99.19  E-value=3.9e-10  Score=105.47  Aligned_cols=142  Identities=15%  Similarity=0.116  Sum_probs=91.0

Q ss_pred             HHHHHhcC---CCCCCCCeEEEECCCccHHHHHHHhc-C-CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeec
Q 009871          323 MAAVLARN---PTIVAGKKVLELGCGCGGICSMVAAG-S-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEW  397 (523)
Q Consensus       323 la~~l~~~---~~~~~~~~VLElG~G~G~l~~~~a~~-~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw  397 (523)
                      ++..+...   ..+.+|.+|||||||+|..+..++.. + ..+|+++|+++.|++.+...+...      .++.+...|-
T Consensus        61 la~~ll~~l~~~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r------~nv~~i~~Da  134 (232)
T 3id6_C           61 LAGAILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRR------PNIFPLLADA  134 (232)
T ss_dssp             HHHHHHTTCSCCSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHC------TTEEEEECCT
T ss_pred             HHHHHHhhhhhcCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc------CCeEEEEccc
Confidence            45555443   33668999999999999988888876 3 459999999999986665544432      2455554443


Q ss_pred             CCCCcchhhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCC--------ChhHH
Q 009871          398 GNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQV--------DEPSM  469 (523)
Q Consensus       398 ~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~--------~~~~~  469 (523)
                      .....   ...+ .++||+|++. +.. +.....+...+.++|         +|||.++++...+..        .....
T Consensus       135 ~~~~~---~~~~-~~~~D~I~~d-~a~-~~~~~il~~~~~~~L---------kpGG~lvisik~~~~d~t~~~~e~~~~~  199 (232)
T 3id6_C          135 RFPQS---YKSV-VENVDVLYVD-IAQ-PDQTDIAIYNAKFFL---------KVNGDMLLVIKARSIDVTKDPKEIYKTE  199 (232)
T ss_dssp             TCGGG---TTTT-CCCEEEEEEC-CCC-TTHHHHHHHHHHHHE---------EEEEEEEEEEC-------CCSSSSTTHH
T ss_pred             ccchh---hhcc-ccceEEEEec-CCC-hhHHHHHHHHHHHhC---------CCCeEEEEEEccCCcccCCCHHHHHHHH
Confidence            32211   1111 3589999985 322 333444556677799         679999987543321        11345


Q ss_pred             HHHHHHcCCEEEEEcC
Q 009871          470 LSAATQCGFRLVDKWP  485 (523)
Q Consensus       470 ~~~~~~~gf~~~~~~~  485 (523)
                      ...++++||++.+...
T Consensus       200 ~~~L~~~gf~~~~~~~  215 (232)
T 3id6_C          200 VEKLENSNFETIQIIN  215 (232)
T ss_dssp             HHHHHHTTEEEEEEEE
T ss_pred             HHHHHHCCCEEEEEec
Confidence            6777788999988765

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=99.19  E-value=1.8e-11  Score=115.55  Aligned_cols=121  Identities=17%  Similarity=0.224  Sum_probs=83.3

Q ss_pred             CCCCCeEEEECCCccccHHHHHhhC-CCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEE
Q 009871           73 GAGRKDVLEVGCGAGNTIFPLIAAY-PDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVT  151 (523)
Q Consensus        73 ~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~  151 (523)
                      ..++.+|||+|||+|.++..+++.. ++.+|+|+|+|+.|++.+.+++... .+++++++|+.+... .++.+++||+|+
T Consensus        75 ~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~-~~v~~~~~d~~~~~~-~~~~~~~~D~V~  152 (233)
T 2ipx_A           75 IKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR-TNIIPVIEDARHPHK-YRMLIAMVDVIF  152 (233)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC-TTEEEECSCTTCGGG-GGGGCCCEEEEE
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc-CCeEEEEcccCChhh-hcccCCcEEEEE
Confidence            3567899999999999999999984 6789999999998877766655333 679999999986320 134567999999


Q ss_pred             Ecccccccee---ee-cceEEecCCeEEEeeCH--------------HHHHHHHHhCCCcEEEE
Q 009871          152 MERLTGKDQK---IS-ENFYVRGDGTRAFYFSN--------------DFLTSLFKENGFDVEEL  197 (523)
Q Consensus       152 ~~~~~~~~~~---~~-~~~~~~~~g~~~~~~~~--------------~~l~~ll~~~Gf~~~~~  197 (523)
                      +.-. .....   +. -...++++|.++.....              .+ .++|+++||++++.
T Consensus       153 ~~~~-~~~~~~~~~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~-~~~l~~~Gf~~~~~  214 (233)
T 2ipx_A          153 ADVA-QPDQTRIVALNAHTFLRNGGHFVISIKANCIDSTASAEAVFASE-VKKMQQENMKPQEQ  214 (233)
T ss_dssp             ECCC-CTTHHHHHHHHHHHHEEEEEEEEEEEEHHHHCSSSCHHHHHHHH-HHTTGGGTEEEEEE
T ss_pred             EcCC-CccHHHHHHHHHHHHcCCCeEEEEEEcccccccCCCHHHHHHHH-HHHHHHCCCceEEE
Confidence            9111 11100   11 11257777776653221              12 57788899998764

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=99.19  E-value=1.1e-10  Score=117.93  Aligned_cols=122  Identities=14%  Similarity=0.183  Sum_probs=88.2

Q ss_pred             hcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC--CCcEEEEEeeccCCccCCCCCCCcee
Q 009871           71 FSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISDDLSRQISPSSID  148 (523)
Q Consensus        71 ~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~~~~~~~~~~fD  148 (523)
                      ++..+..+|||||||+|..+..+++.+|+.+++++|+ +.+++.|+++....  ..++++..+|+. .    +++. .||
T Consensus       198 ~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~-~----~~p~-~~D  270 (369)
T 3gwz_A          198 YDFSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFF-E----TIPD-GAD  270 (369)
T ss_dssp             SCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTT-T----CCCS-SCS
T ss_pred             CCCccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCC-C----CCCC-Cce
Confidence            3445678999999999999999999999999999999 99999999875432  367999999997 3    4455 799


Q ss_pred             EEEE-------------------ccccccceeeecceEEecCCeE---------------EEeeCHHHHHHHHHhCCCcE
Q 009871          149 IVTM-------------------ERLTGKDQKISENFYVRGDGTR---------------AFYFSNDFLTSLFKENGFDV  194 (523)
Q Consensus       149 ~V~~-------------------~~~~~~~~~~~~~~~~~~~g~~---------------~~~~~~~~l~~ll~~~Gf~~  194 (523)
                      +|++                   .+.+++++++.-.....++...               -..++.+++.++|+++||++
T Consensus       271 ~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~  350 (369)
T 3gwz_A          271 VYLIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVIDNLIDERPAASTLFVDLLLLVLVGGAERSESEFAALLEKSGLRV  350 (369)
T ss_dssp             EEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEEBCCSSCCHHHHHHHHHHHHHHSCCCBCHHHHHHHHHTTTEEE
T ss_pred             EEEhhhhhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhHhhHHHHhhcCCccCCHHHHHHHHHHCCCeE
Confidence            9999                   2223333333211111111100               01257899999999999999


Q ss_pred             EEEEe
Q 009871          195 EELGL  199 (523)
Q Consensus       195 ~~~~~  199 (523)
                      +++..
T Consensus       351 ~~~~~  355 (369)
T 3gwz_A          351 ERSLP  355 (369)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            87743

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=99.19  E-value=8.7e-11  Score=108.76  Aligned_cols=104  Identities=13%  Similarity=0.014  Sum_probs=81.0

Q ss_pred             CCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhc
Q 009871          331 PTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEEN  410 (523)
Q Consensus       331 ~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~  410 (523)
                      ....++.+|||+|||+|.++..++.. ..+|+++|+++.+++.+++|+..++..    ++.+...|+.+..       ..
T Consensus        73 l~~~~~~~vLdiG~G~G~~~~~la~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~----~v~~~~~d~~~~~-------~~  140 (210)
T 3lbf_A           73 LELTPQSRVLEIGTGSGYQTAILAHL-VQHVCSVERIKGLQWQARRRLKNLDLH----NVSTRHGDGWQGW-------QA  140 (210)
T ss_dssp             TTCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEEESCHHHHHHHHHHHHHTTCC----SEEEEESCGGGCC-------GG
T ss_pred             cCCCCCCEEEEEcCCCCHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHHcCCC----ceEEEECCcccCC-------cc
Confidence            34457889999999999888888887 568999999999999999999987653    4677766654421       12


Q ss_pred             CCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee
Q 009871          411 NEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIF  461 (523)
Q Consensus       411 ~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~  461 (523)
                      .++||+|+++.++.+...      .+.++|         +|||.+++....
T Consensus       141 ~~~~D~i~~~~~~~~~~~------~~~~~L---------~pgG~lv~~~~~  176 (210)
T 3lbf_A          141 RAPFDAIIVTAAPPEIPT------ALMTQL---------DEGGILVLPVGE  176 (210)
T ss_dssp             GCCEEEEEESSBCSSCCT------HHHHTE---------EEEEEEEEEECS
T ss_pred             CCCccEEEEccchhhhhH------HHHHhc---------ccCcEEEEEEcC
Confidence            468999999877765432      577888         679999887755

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=99.19  E-value=2.7e-11  Score=122.26  Aligned_cols=75  Identities=19%  Similarity=0.291  Sum_probs=63.3

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCC--CcEEEEEeeccCCccCCCCCCCceeEEE
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQISPSSIDIVT  151 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~V~  151 (523)
                      ....+|||||||+|..+..+++++|+.+|+++|+ +.|++.|+++....+  .+++++.+|+.+..+  |++ ++||+|+
T Consensus       178 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--~~p-~~~D~v~  253 (363)
T 3dp7_A          178 HHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDV--PFP-TGFDAVW  253 (363)
T ss_dssp             GCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSC--CCC-CCCSEEE
T ss_pred             cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccccCC--CCC-CCcCEEE
Confidence            4668999999999999999999999999999999 999999999764332  579999999986421  233 6899999


Q ss_pred             E
Q 009871          152 M  152 (523)
Q Consensus       152 ~  152 (523)
                      +
T Consensus       254 ~  254 (363)
T 3dp7_A          254 M  254 (363)
T ss_dssp             E
T ss_pred             E
Confidence            9

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=99.18  E-value=4.6e-11  Score=114.22  Aligned_cols=119  Identities=19%  Similarity=0.214  Sum_probs=91.5

Q ss_pred             hhcCCCCCeEEEECCCccccHHHHHhh-CCCCEEEEEeCCHHHHHHHHhccccC--CCcEEEEEeeccCCccCCCCCCCc
Q 009871           70 YFSGAGRKDVLEVGCGAGNTIFPLIAA-YPDVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISDDLSRQISPSS  146 (523)
Q Consensus        70 ~~~~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~v~gvD~S~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~~~~~~~~~~  146 (523)
                      .+...++.+|||+|||+|.++..+++. +|+.+|+|+|+|+.+++.|+++....  ..++++.++|+.+     ++++++
T Consensus        88 ~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-----~~~~~~  162 (255)
T 3mb5_A           88 YAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYE-----GIEEEN  162 (255)
T ss_dssp             HTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGG-----CCCCCS
T ss_pred             hhCCCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhh-----ccCCCC
Confidence            445567889999999999999999999 88899999999999999999986432  2459999999984     356788


Q ss_pred             eeEEEE-----ccccccceeeecceEEecCCeEEEee----CHHHHHHHHHhCC--CcEEEEE
Q 009871          147 IDIVTM-----ERLTGKDQKISENFYVRGDGTRAFYF----SNDFLTSLFKENG--FDVEELG  198 (523)
Q Consensus       147 fD~V~~-----~~~~~~~~~~~~~~~~~~~g~~~~~~----~~~~l~~ll~~~G--f~~~~~~  198 (523)
                      ||+|++     ..++....+     .++++|.++.+.    ..+++.+.+++.|  |..+++.
T Consensus       163 ~D~v~~~~~~~~~~l~~~~~-----~L~~gG~l~~~~~~~~~~~~~~~~l~~~g~~f~~~~~~  220 (255)
T 3mb5_A          163 VDHVILDLPQPERVVEHAAK-----ALKPGGFFVAYTPCSNQVMRLHEKLREFKDYFMKPRTI  220 (255)
T ss_dssp             EEEEEECSSCGGGGHHHHHH-----HEEEEEEEEEEESSHHHHHHHHHHHHHTGGGBSCCEEE
T ss_pred             cCEEEECCCCHHHHHHHHHH-----HcCCCCEEEEEECCHHHHHHHHHHHHHcCCCccccEEE
Confidence            999999     112222222     577888877643    3456788889999  9866553

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=99.18  E-value=1.5e-11  Score=116.52  Aligned_cols=72  Identities=18%  Similarity=0.257  Sum_probs=62.5

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCC--CcEEEEEeeccCCccCCCCCCCceeEEE
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQISPSSIDIVT  151 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~V~  151 (523)
                      .++.+|||+|||+|..+..+++.  +.+|+|+|+|+.|++.|+++....+  .+++++++|+.+.    + ++++||+|+
T Consensus        77 ~~~~~vLD~gcG~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~----~-~~~~~D~v~  149 (241)
T 3gdh_A           77 FKCDVVVDAFCGVGGNTIQFALT--GMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLL----A-SFLKADVVF  149 (241)
T ss_dssp             SCCSEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHH----G-GGCCCSEEE
T ss_pred             cCCCEEEECccccCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHh----c-ccCCCCEEE
Confidence            36889999999999999999988  4789999999999999999875444  4799999999865    2 467999999


Q ss_pred             E
Q 009871          152 M  152 (523)
Q Consensus       152 ~  152 (523)
                      +
T Consensus       150 ~  150 (241)
T 3gdh_A          150 L  150 (241)
T ss_dssp             E
T ss_pred             E
Confidence            9

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=99.18  E-value=2.2e-11  Score=114.67  Aligned_cols=145  Identities=18%  Similarity=0.160  Sum_probs=94.6

Q ss_pred             hhHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeec
Q 009871          318 ESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEW  397 (523)
Q Consensus       318 ~~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw  397 (523)
                      .++..|.+.|.......++++|||||||+|.++..+++.++.+|+++|+|+.|++.++++.......   ...   ...+
T Consensus        20 rg~~kL~~~L~~~~~~~~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~~a~~~~~~~~~~---~~~---~~~~   93 (232)
T 3opn_A           20 RGGLKLEKALKEFHLEINGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAWKIRSDERVVVM---EQF---NFRN   93 (232)
T ss_dssp             TTHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCCHHHHTCTTEEEE---CSC---CGGG
T ss_pred             CcHHHHHHHHHHcCCCCCCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHHHHHHhCcccccc---ccc---eEEE
Confidence            4455677777666555578899999999999998898888779999999999999877643221100   000   0011


Q ss_pred             CCCCcchhhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec---------------
Q 009871          398 GNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFR---------------  462 (523)
Q Consensus       398 ~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r---------------  462 (523)
                      ...+      .+....||.+.. |+++..  +..+++.+.++|         +|||.+++.....               
T Consensus        94 ~~~~------~~~~~~~d~~~~-D~v~~~--l~~~l~~i~rvL---------kpgG~lv~~~~p~~e~~~~~~~~~G~~~  155 (232)
T 3opn_A           94 AVLA------DFEQGRPSFTSI-DVSFIS--LDLILPPLYEIL---------EKNGEVAALIKPQFEAGREQVGKNGIIR  155 (232)
T ss_dssp             CCGG------GCCSCCCSEEEE-CCSSSC--GGGTHHHHHHHS---------CTTCEEEEEECHHHHSCHHHHC-CCCCC
T ss_pred             eCHh------HcCcCCCCEEEE-EEEhhh--HHHHHHHHHHhc---------cCCCEEEEEECcccccCHHHhCcCCeec
Confidence            1101      111223566543 444432  488999999999         7899998863210               


Q ss_pred             -----CCChhHHHHHHHHcCCEEEEEcCC
Q 009871          463 -----QVDEPSMLSAATQCGFRLVDKWPS  486 (523)
Q Consensus       463 -----~~~~~~~~~~~~~~gf~~~~~~~~  486 (523)
                           ......+.+.+++.||++..+...
T Consensus       156 d~~~~~~~~~~l~~~l~~aGf~v~~~~~~  184 (232)
T 3opn_A          156 DPKVHQMTIEKVLKTATQLGFSVKGLTFS  184 (232)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTEEEEEEEEC
T ss_pred             CcchhHHHHHHHHHHHHHCCCEEEEEEEc
Confidence                 012245677888999999888654

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=99.18  E-value=1.7e-10  Score=114.92  Aligned_cols=128  Identities=11%  Similarity=0.095  Sum_probs=100.1

Q ss_pred             CeEEEECCCccHHHHHHHhcC-CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCcc
Q 009871          337 KKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFE  415 (523)
Q Consensus       337 ~~VLElG~G~G~l~~~~a~~~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~fD  415 (523)
                      .+|||+|||+|.++..++... ..+++++|+ +.+++.+++++..+++.   .++.+...|+.+.        + +.+||
T Consensus       169 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~---~~v~~~~~d~~~~--------~-~~~~D  235 (334)
T 2ip2_A          169 RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLAG---ERVSLVGGDMLQE--------V-PSNGD  235 (334)
T ss_dssp             CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHHT---TSEEEEESCTTTC--------C-CSSCS
T ss_pred             CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCCC---CcEEEecCCCCCC--------C-CCCCC
Confidence            899999999998888888774 458999999 99999999998776543   4678877766542        1 35799


Q ss_pred             EEEEccccCCCCC--hHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecC-----------------------CChhHHH
Q 009871          416 VILGTDVSYIPEA--ILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ-----------------------VDEPSML  470 (523)
Q Consensus       416 ~Ii~~d~~y~~~~--~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~-----------------------~~~~~~~  470 (523)
                      +|++..++++...  ...+++.+.++|         +|||.+++......                       .+..++.
T Consensus       236 ~v~~~~vl~~~~~~~~~~~l~~~~~~L---------~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~  306 (334)
T 2ip2_A          236 IYLLSRIIGDLDEAASLRLLGNCREAM---------AGDGRVVVIERTISASEPSPMSVLWDVHLFMACAGRHRTTEEVV  306 (334)
T ss_dssp             EEEEESCGGGCCHHHHHHHHHHHHHHS---------CTTCEEEEEECCBCSSSCCHHHHHHHHHHHHHHSCCCCBHHHHH
T ss_pred             EEEEchhccCCCHHHHHHHHHHHHHhc---------CCCCEEEEEEeccCCCCCcchhHHhhhHhHhhCCCcCCCHHHHH
Confidence            9999999976544  348999999999         77999998854321                       1345667


Q ss_pred             HHHHHcCCEEEEEcCC
Q 009871          471 SAATQCGFRLVDKWPS  486 (523)
Q Consensus       471 ~~~~~~gf~~~~~~~~  486 (523)
                      +.+++.||++.+++..
T Consensus       307 ~ll~~aGf~~~~~~~~  322 (334)
T 2ip2_A          307 DLLGRGGFAVERIVDL  322 (334)
T ss_dssp             HHHHHTTEEEEEEEEE
T ss_pred             HHHHHCCCceeEEEEC
Confidence            7888999999988763

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=99.17  E-value=1.7e-11  Score=126.13  Aligned_cols=120  Identities=12%  Similarity=0.079  Sum_probs=80.6

Q ss_pred             hhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeE
Q 009871           70 YFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDI  149 (523)
Q Consensus        70 ~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~  149 (523)
                      .+...++.+|||||||+|.++..+++.  +.+|+|+|+|+.|++.|+++... .....+...+...+    ++++++||+
T Consensus       102 ~~~~~~~~~VLDiGcG~G~~~~~l~~~--g~~v~gvD~s~~~~~~a~~~~~~-~~~~~~~~~~~~~l----~~~~~~fD~  174 (416)
T 4e2x_A          102 TELTGPDPFIVEIGCNDGIMLRTIQEA--GVRHLGFEPSSGVAAKAREKGIR-VRTDFFEKATADDV----RRTEGPANV  174 (416)
T ss_dssp             TTTCSSSCEEEEETCTTTTTHHHHHHT--TCEEEEECCCHHHHHHHHTTTCC-EECSCCSHHHHHHH----HHHHCCEEE
T ss_pred             HhCCCCCCEEEEecCCCCHHHHHHHHc--CCcEEEECCCHHHHHHHHHcCCC-cceeeechhhHhhc----ccCCCCEEE
Confidence            344457889999999999999999987  55799999999999999987210 00001222333333    455789999


Q ss_pred             EEE-----------------ccccccceeeecceEEecC--------------CeEEEeeCHHHHHHHHHhCCCcEEEEE
Q 009871          150 VTM-----------------ERLTGKDQKISENFYVRGD--------------GTRAFYFSNDFLTSLFKENGFDVEELG  198 (523)
Q Consensus       150 V~~-----------------~~~~~~~~~~~~~~~~~~~--------------g~~~~~~~~~~l~~ll~~~Gf~~~~~~  198 (523)
                      |++                 .+.+++++.+.   +..+.              .....+++.+++.++++++||+++.+.
T Consensus       175 I~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~---i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~aGf~~~~~~  251 (416)
T 4e2x_A          175 IYAANTLCHIPYVQSVLEGVDALLAPDGVFV---FEDPYLGDIVAKTSFDQIFDEHFFLFSATSVQGMAQRCGFELVDVQ  251 (416)
T ss_dssp             EEEESCGGGCTTHHHHHHHHHHHEEEEEEEE---EEEECHHHHHHHTCGGGCSTTCCEECCHHHHHHHHHHTTEEEEEEE
T ss_pred             EEECChHHhcCCHHHHHHHHHHHcCCCeEEE---EEeCChHHhhhhcchhhhhhhhhhcCCHHHHHHHHHHcCCEEEEEE
Confidence            999                 23334443332   11110              112235689999999999999988775


Q ss_pred             e
Q 009871          199 L  199 (523)
Q Consensus       199 ~  199 (523)
                      .
T Consensus       252 ~  252 (416)
T 4e2x_A          252 R  252 (416)
T ss_dssp             E
T ss_pred             E
Confidence            4

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=99.17  E-value=1.3e-10  Score=111.48  Aligned_cols=129  Identities=12%  Similarity=0.146  Sum_probs=88.6

Q ss_pred             hhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhcccc---CC--CcEEEEEeeccCCcc---CCC
Q 009871           70 YFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDF---TE--TRVSTFVCDLISDDL---SRQ  141 (523)
Q Consensus        70 ~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~---~~--~~v~~~~~d~~~~~~---~~~  141 (523)
                      +++..++.+|||+|||+|.++..+++++|+.+|+|+|+++.|++.|+++...   .+  .+++++++|+.+...   ..+
T Consensus        31 ~~~~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~  110 (260)
T 2ozv_A           31 LVADDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAG  110 (260)
T ss_dssp             TCCCCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTT
T ss_pred             HhcccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhc
Confidence            3344567899999999999999999998888999999999999999998754   33  359999999986410   012


Q ss_pred             CCCCceeEEEEc-cccccce-----------------eeec-----ceEEecCCeEEEeeCH---HHHHHHHHhCCCcEE
Q 009871          142 ISPSSIDIVTME-RLTGKDQ-----------------KISE-----NFYVRGDGTRAFYFSN---DFLTSLFKENGFDVE  195 (523)
Q Consensus       142 ~~~~~fD~V~~~-~~~~~~~-----------------~~~~-----~~~~~~~g~~~~~~~~---~~l~~ll~~~Gf~~~  195 (523)
                      +++++||+|++. .+.....                 .+..     ...++++|.+.+.+..   .++.+.+++. |...
T Consensus       111 ~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~~~-~~~~  189 (260)
T 2ozv_A          111 LPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISRPQSVAEIIAACGSR-FGGL  189 (260)
T ss_dssp             CCTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEECGGGHHHHHHHHTTT-EEEE
T ss_pred             cCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEcHHHHHHHHHHHHhc-CCce
Confidence            457899999992 2211100                 0000     1257888988776543   4566666653 6655


Q ss_pred             EEEe
Q 009871          196 ELGL  199 (523)
Q Consensus       196 ~~~~  199 (523)
                      .+..
T Consensus       190 ~i~~  193 (260)
T 2ozv_A          190 EITL  193 (260)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            5443

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=99.17  E-value=1.1e-10  Score=104.44  Aligned_cols=107  Identities=20%  Similarity=0.230  Sum_probs=79.5

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEEE-
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM-  152 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~-  152 (523)
                      .++.+|||+|||+|.++..+++.+   +|+|+|+|+.|++.        ..+++++++|+.+     ++++++||+|++ 
T Consensus        22 ~~~~~vLD~GcG~G~~~~~l~~~~---~v~gvD~s~~~~~~--------~~~~~~~~~d~~~-----~~~~~~fD~i~~n   85 (170)
T 3q87_B           22 LEMKIVLDLGTSTGVITEQLRKRN---TVVSTDLNIRALES--------HRGGNLVRADLLC-----SINQESVDVVVFN   85 (170)
T ss_dssp             CCSCEEEEETCTTCHHHHHHTTTS---EEEEEESCHHHHHT--------CSSSCEEECSTTT-----TBCGGGCSEEEEC
T ss_pred             CCCCeEEEeccCccHHHHHHHhcC---cEEEEECCHHHHhc--------ccCCeEEECChhh-----hcccCCCCEEEEC
Confidence            456799999999999999999885   79999999999988        2468899999975     345589999999 


Q ss_pred             ccccc---c--------c----eeeecceEEecCCeEEEe----eCHHHHHHHHHhCCCcEEEEEe
Q 009871          153 ERLTG---K--------D----QKISENFYVRGDGTRAFY----FSNDFLTSLFKENGFDVEELGL  199 (523)
Q Consensus       153 ~~~~~---~--------~----~~~~~~~~~~~~g~~~~~----~~~~~l~~ll~~~Gf~~~~~~~  199 (523)
                      ..+..   .        .    ..+..  .+ ++|.+.+.    ...+++.++++++||....+..
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l-pgG~l~~~~~~~~~~~~l~~~l~~~gf~~~~~~~  148 (170)
T 3q87_B           86 PPYVPDTDDPIIGGGYLGREVIDRFVD--AV-TVGMLYLLVIEANRPKEVLARLEERGYGTRILKV  148 (170)
T ss_dssp             CCCBTTCCCTTTBCCGGGCHHHHHHHH--HC-CSSEEEEEEEGGGCHHHHHHHHHHTTCEEEEEEE
T ss_pred             CCCccCCccccccCCcchHHHHHHHHh--hC-CCCEEEEEEecCCCHHHHHHHHHHCCCcEEEEEe
Confidence            11110   0        0    11111  12 77877653    3678999999999999766543

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=99.17  E-value=2.1e-10  Score=102.57  Aligned_cols=141  Identities=11%  Similarity=0.119  Sum_probs=96.7

Q ss_pred             hHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhc-CC-CEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeee
Q 009871          319 SAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAG-SA-DLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLE  396 (523)
Q Consensus       319 ~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~-~~-~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ld  396 (523)
                      +...+.+++.......++.+|||+|||+|.++..++.. ++ .+|+++|+++ +++.              .++.+...|
T Consensus         6 ~~~~l~~~~~~~~~~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~--------------~~~~~~~~d   70 (180)
T 1ej0_A            6 AWFKLDEIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI--------------VGVDFLQGD   70 (180)
T ss_dssp             HHHHHHHHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC--------------TTEEEEESC
T ss_pred             HHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc--------------CcEEEEEcc
Confidence            34445565555444557889999999999888888887 44 6999999998 6532              345666665


Q ss_pred             cCCCCcchhhhh-hcCCCccEEEEccccCCCCCh-----------HHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCC
Q 009871          397 WGNRDHIEAIKE-ENNEGFEVILGTDVSYIPEAI-----------LPLFATAKELTASSNKSLREDQQPAFILCHIFRQV  464 (523)
Q Consensus       397 w~~~~~~~~~~~-~~~~~fD~Ii~~d~~y~~~~~-----------~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~  464 (523)
                      +.+......+.. +++++||+|+++.+++.....           ..+++.+.++|         +|+|.+++.... ..
T Consensus        71 ~~~~~~~~~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L---------~~gG~l~~~~~~-~~  140 (180)
T 1ej0_A           71 FRDELVMKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVL---------APGGSFVVKVFQ-GE  140 (180)
T ss_dssp             TTSHHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHE---------EEEEEEEEEEES-ST
T ss_pred             cccchhhhhhhccCCCCceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHc---------CCCcEEEEEEec-CC
Confidence            544211111111 445789999998887766555           78899999999         679999886654 34


Q ss_pred             ChhHHHHHHHHcCCEEEEEcC
Q 009871          465 DEPSMLSAATQCGFRLVDKWP  485 (523)
Q Consensus       465 ~~~~~~~~~~~~gf~~~~~~~  485 (523)
                      ....+.+.+.+. |....+..
T Consensus       141 ~~~~~~~~~~~~-~~~~~~~~  160 (180)
T 1ej0_A          141 GFDEYLREIRSL-FTKVKVRK  160 (180)
T ss_dssp             THHHHHHHHHHH-EEEEEEEC
T ss_pred             cHHHHHHHHHHh-hhhEEeec
Confidence            455677777775 77666654

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=99.17  E-value=1.5e-10  Score=115.31  Aligned_cols=119  Identities=13%  Similarity=0.213  Sum_probs=84.9

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC--CCcEEEEEeeccCCccCCCCCCCceeEEE
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISDDLSRQISPSSIDIVT  151 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~~~~~~~~~~fD~V~  151 (523)
                      .++.+|||||||+|..+..+++.+|+.+|+|+|+| .|++.|+++....  ..+++++++|+.+.    +++++ ||+|+
T Consensus       164 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~~~~~-~D~v~  237 (335)
T 2r3s_A          164 IEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFEV----DYGND-YDLVL  237 (335)
T ss_dssp             CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTS----CCCSC-EEEEE
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccccC----CCCCC-CcEEE
Confidence            56789999999999999999999988999999999 9999999875332  24699999999865    34444 99999


Q ss_pred             E-------------------ccccccceeeecceEEecCC-e-----------------EEEeeCHHHHHHHHHhCCCcE
Q 009871          152 M-------------------ERLTGKDQKISENFYVRGDG-T-----------------RAFYFSNDFLTSLFKENGFDV  194 (523)
Q Consensus       152 ~-------------------~~~~~~~~~~~~~~~~~~~g-~-----------------~~~~~~~~~l~~ll~~~Gf~~  194 (523)
                      +                   .+.+++++.+.-.....++. .                 ....++.+++.++++++||..
T Consensus       238 ~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~ll~~aGf~~  317 (335)
T 2r3s_A          238 LPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDFIPNSDRITPPDAAAFSLVMLATTPNGDAYTFAEYESMFSNAGFSH  317 (335)
T ss_dssp             EESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCCCTTSSCSHHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHTTCSE
T ss_pred             EcchhccCCHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCcCCchHHHHHHHHHHeeCCCCCcCCHHHHHHHHHHCCCCe
Confidence            9                   11122333221100001100 0                 012347899999999999998


Q ss_pred             EEEE
Q 009871          195 EELG  198 (523)
Q Consensus       195 ~~~~  198 (523)
                      +++.
T Consensus       318 ~~~~  321 (335)
T 2r3s_A          318 SQLH  321 (335)
T ss_dssp             EEEE
T ss_pred             eeEE
Confidence            8764

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=99.17  E-value=2.3e-10  Score=114.90  Aligned_cols=133  Identities=13%  Similarity=0.092  Sum_probs=103.2

Q ss_pred             CCCC-CCeEEEECCCccHHHHHHHhcC-CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhh
Q 009871          332 TIVA-GKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEE  409 (523)
Q Consensus       332 ~~~~-~~~VLElG~G~G~l~~~~a~~~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~  409 (523)
                      ...+ +.+|||+|||+|.++..+++.. ..+++++|+ +.+++.+++++..++..   .++.+...|+.+..      ..
T Consensus       175 ~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~---~~v~~~~~d~~~~~------~~  244 (352)
T 3mcz_A          175 GVFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHDLG---GRVEFFEKNLLDAR------NF  244 (352)
T ss_dssp             GGGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCG---GGEEEEECCTTCGG------GG
T ss_pred             CCcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcCCC---CceEEEeCCcccCc------cc
Confidence            3445 7899999999999888888875 358999999 88999999999887654   56888887766531      11


Q ss_pred             cCCCccEEEEccccCCCCC--hHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec-------------------------
Q 009871          410 NNEGFEVILGTDVSYIPEA--ILPLFATAKELTASSNKSLREDQQPAFILCHIFR-------------------------  462 (523)
Q Consensus       410 ~~~~fD~Ii~~d~~y~~~~--~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r-------------------------  462 (523)
                      .+..||+|++..++++...  ...+++.+.+.|         +|||.+++.....                         
T Consensus       245 ~~~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L---------~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (352)
T 3mcz_A          245 EGGAADVVMLNDCLHYFDAREAREVIGHAAGLV---------KPGGALLILTMTMNDDRVTPALSADFSLHMMVNTNHGE  315 (352)
T ss_dssp             TTCCEEEEEEESCGGGSCHHHHHHHHHHHHHTE---------EEEEEEEEEEECCCTTSSSSHHHHHHHHHHHHHSTTCC
T ss_pred             CCCCccEEEEecccccCCHHHHHHHHHHHHHHc---------CCCCEEEEEEeccCCCCCCCchHHHhhHHHHhhCCCCC
Confidence            2457999999999987653  588999999999         6799998876421                         


Q ss_pred             CCChhHHHHHHHHcCCEEEEE
Q 009871          463 QVDEPSMLSAATQCGFRLVDK  483 (523)
Q Consensus       463 ~~~~~~~~~~~~~~gf~~~~~  483 (523)
                      ..+..++.+.+++.||++.+.
T Consensus       316 ~~t~~e~~~ll~~aGf~~~~~  336 (352)
T 3mcz_A          316 LHPTPWIAGVVRDAGLAVGER  336 (352)
T ss_dssp             CCCHHHHHHHHHHTTCEEEEE
T ss_pred             cCCHHHHHHHHHHCCCceeee
Confidence            123456778889999999874

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=99.16  E-value=5.2e-11  Score=110.42  Aligned_cols=116  Identities=15%  Similarity=0.189  Sum_probs=87.9

Q ss_pred             HHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCC
Q 009871          322 LMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRD  401 (523)
Q Consensus       322 ~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~  401 (523)
                      .+.+++....  .++.+|||+|||+|.++..++..+..+|+++|+++.+++.+++++..      ..++.+...|..+. 
T Consensus        31 ~~~~~l~~~~--~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~------~~~i~~~~~d~~~~-  101 (215)
T 2pxx_A           31 SFRALLEPEL--RPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAH------VPQLRWETMDVRKL-  101 (215)
T ss_dssp             HHHHHHGGGC--CTTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHHHHHHTTT------CTTCEEEECCTTSC-
T ss_pred             HHHHHHHHhc--CCCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHHHHHhccc------CCCcEEEEcchhcC-
Confidence            3566666543  46789999999999988888888766899999999999999988653      13566666655432 


Q ss_pred             cchhhhhhcCCCccEEEEccccCC---------------CCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee
Q 009871          402 HIEAIKEENNEGFEVILGTDVSYI---------------PEAILPLFATAKELTASSNKSLREDQQPAFILCHIF  461 (523)
Q Consensus       402 ~~~~~~~~~~~~fD~Ii~~d~~y~---------------~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~  461 (523)
                            ++.+++||+|+++.++..               ......+++.+.++|         +|||.+++....
T Consensus       102 ------~~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L---------kpgG~li~~~~~  161 (215)
T 2pxx_A          102 ------DFPSASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVL---------VPGGRFISMTSA  161 (215)
T ss_dssp             ------CSCSSCEEEEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHE---------EEEEEEEEEESC
T ss_pred             ------CCCCCcccEEEECcchhhhccccccccccccchhHHHHHHHHHHHHhC---------cCCCEEEEEeCC
Confidence                  234568999999876532               224578899999999         679999887654

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=99.16  E-value=5.3e-11  Score=118.59  Aligned_cols=119  Identities=19%  Similarity=0.140  Sum_probs=85.5

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC--CCcEEEEEeeccCCccCCCCCCCceeEEE
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISDDLSRQISPSSIDIVT  151 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~~~~~~~~~~fD~V~  151 (523)
                      .+..+|||||||+|..+..+++.+|+.+++++|+ +.|++.|+++....  ..++++..+|+. .    +++. +||+|+
T Consensus       168 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~-~----~~p~-~~D~v~  240 (332)
T 3i53_A          168 AALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFF-D----PLPA-GAGGYV  240 (332)
T ss_dssp             GGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTT-S----CCCC-SCSEEE
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCC-C----CCCC-CCcEEE
Confidence            4568999999999999999999999999999999 99999999875432  367999999997 3    3444 799999


Q ss_pred             E-------------------ccccccceeeecceEEecCCeE-------------EEeeCHHHHHHHHHhCCCcEEEEEe
Q 009871          152 M-------------------ERLTGKDQKISENFYVRGDGTR-------------AFYFSNDFLTSLFKENGFDVEELGL  199 (523)
Q Consensus       152 ~-------------------~~~~~~~~~~~~~~~~~~~g~~-------------~~~~~~~~l~~ll~~~Gf~~~~~~~  199 (523)
                      +                   .+.+++++++.-.....++...             ...++.+++.++++++||+++++..
T Consensus       241 ~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~  320 (332)
T 3i53_A          241 LSAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVAGDEHAGTGMDLRMLTYFGGKERSLAELGELAAQAGLAVRAAHP  320 (332)
T ss_dssp             EESCGGGSCHHHHHHHHHHHHHHHTTTCEEEEEECCCC---CCHHHHHHHHHHHSCCCCCHHHHHHHHHHTTEEEEEEEE
T ss_pred             EehhhccCCHHHHHHHHHHHHHhcCCCCEEEEEeecCCCCCccHHHHHHHHhhCCCCCCCHHHHHHHHHHCCCEEEEEEE
Confidence            9                   2222333333211011111000             0124789999999999999887753

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=99.16  E-value=1e-10  Score=107.96  Aligned_cols=121  Identities=10%  Similarity=0.066  Sum_probs=91.3

Q ss_pred             CCCeEEEECCCccHHHHHHHhc-CCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCC
Q 009871          335 AGKKVLELGCGCGGICSMVAAG-SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG  413 (523)
Q Consensus       335 ~~~~VLElG~G~G~l~~~~a~~-~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~  413 (523)
                      ++.+|||+|||+|.++..++.. ...+|+++|+++.+++.+++|+..++..    .+.+...|+.+..        +.++
T Consensus        65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~----~v~~~~~d~~~~~--------~~~~  132 (207)
T 1jsx_A           65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLE----NIEPVQSRVEEFP--------SEPP  132 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCS----SEEEEECCTTTSC--------CCSC
T ss_pred             CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC----CeEEEecchhhCC--------ccCC
Confidence            5789999999999888888876 3569999999999999999999987663    3777777765431        2358


Q ss_pred             ccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhHHHHHHHHcCCEEEEEc
Q 009871          414 FEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLVDKW  484 (523)
Q Consensus       414 fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~~~~~~~~gf~~~~~~  484 (523)
                      ||+|++..+    .....+++.+.++|         +|||.+++.....  ..+.+.+...  ||++.++.
T Consensus       133 ~D~i~~~~~----~~~~~~l~~~~~~L---------~~gG~l~~~~~~~--~~~~~~~~~~--g~~~~~~~  186 (207)
T 1jsx_A          133 FDGVISRAF----ASLNDMVSWCHHLP---------GEQGRFYALKGQM--PEDEIALLPE--EYQVESVV  186 (207)
T ss_dssp             EEEEECSCS----SSHHHHHHHHTTSE---------EEEEEEEEEESSC--CHHHHHTSCT--TEEEEEEE
T ss_pred             cCEEEEecc----CCHHHHHHHHHHhc---------CCCcEEEEEeCCC--chHHHHHHhc--CCceeeee
Confidence            999997642    56788999999999         6799998875432  2333333332  89887753

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=99.15  E-value=8.6e-10  Score=111.45  Aligned_cols=126  Identities=13%  Similarity=0.135  Sum_probs=90.3

Q ss_pred             CCCCCeEEEECCCccHHHHHHHhcCCC-EEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcC
Q 009871          333 IVAGKKVLELGCGCGGICSMVAAGSAD-LVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENN  411 (523)
Q Consensus       333 ~~~~~~VLElG~G~G~l~~~~a~~~~~-~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~  411 (523)
                      ..++.+|||+|||+|.++..++..+.. +|+++|+|+.|++.|+.|+..+++.   ..+.+...|..+.       +.+.
T Consensus       215 ~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~---~~i~~~~~D~~~~-------~~~~  284 (373)
T 3tm4_A          215 ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVL---DKIKFIQGDATQL-------SQYV  284 (373)
T ss_dssp             TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCG---GGCEEEECCGGGG-------GGTC
T ss_pred             cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCC---CceEEEECChhhC-------Cccc
Confidence            347889999999999998888887653 8999999999999999999998874   4567766555432       2234


Q ss_pred             CCccEEEEccccCCCC-----C----hHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhHHHHHHHHcCCEEEE
Q 009871          412 EGFEVILGTDVSYIPE-----A----ILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLVD  482 (523)
Q Consensus       412 ~~fD~Ii~~d~~y~~~-----~----~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~~~~~~~~gf~~~~  482 (523)
                      ++||+|+++.. |...     .    +..+++.++++|           +|.+++...    +...+.+.+.+.||++.+
T Consensus       285 ~~fD~Ii~npP-yg~r~~~~~~~~~ly~~~~~~l~r~l-----------~g~~~~i~~----~~~~~~~~~~~~G~~~~~  348 (373)
T 3tm4_A          285 DSVDFAISNLP-YGLKIGKKSMIPDLYMKFFNELAKVL-----------EKRGVFITT----EKKAIEEAIAENGFEIIH  348 (373)
T ss_dssp             SCEEEEEEECC-CC------CCHHHHHHHHHHHHHHHE-----------EEEEEEEES----CHHHHHHHHHHTTEEEEE
T ss_pred             CCcCEEEECCC-CCcccCcchhHHHHHHHHHHHHHHHc-----------CCeEEEEEC----CHHHHHHHHHHcCCEEEE
Confidence            68999999654 3321     2    356677777777           344433322    234566777889999877


Q ss_pred             Ec
Q 009871          483 KW  484 (523)
Q Consensus       483 ~~  484 (523)
                      ..
T Consensus       349 ~~  350 (373)
T 3tm4_A          349 HR  350 (373)
T ss_dssp             EE
T ss_pred             EE
Confidence            53

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=99.15  E-value=1.1e-10  Score=113.11  Aligned_cols=118  Identities=17%  Similarity=0.116  Sum_probs=89.3

Q ss_pred             hcCCCCCeEEEECCCccccHHHHHhh-CCCCEEEEEeCCHHHHHHHHhccccCC--CcEEEEEeeccCCccCCCCCCCce
Q 009871           71 FSGAGRKDVLEVGCGAGNTIFPLIAA-YPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQISPSSI  147 (523)
Q Consensus        71 ~~~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~v~gvD~S~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~f  147 (523)
                      +...++.+|||+|||+|.++..+++. +|+.+|+|+|+|+.+++.|+++....+  .++++.++|+.+.     +++++|
T Consensus       108 ~~~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----~~~~~~  182 (277)
T 1o54_A          108 LDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEG-----FDEKDV  182 (277)
T ss_dssp             TTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGC-----CSCCSE
T ss_pred             hCCCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHc-----ccCCcc
Confidence            34456789999999999999999998 678899999999999999999764333  4799999999754     456789


Q ss_pred             eEEEE-----ccccccceeeecceEEecCCeEEEeeC----HHHHHHHHHhCCCcEEEEE
Q 009871          148 DIVTM-----ERLTGKDQKISENFYVRGDGTRAFYFS----NDFLTSLFKENGFDVEELG  198 (523)
Q Consensus       148 D~V~~-----~~~~~~~~~~~~~~~~~~~g~~~~~~~----~~~l~~ll~~~Gf~~~~~~  198 (523)
                      |+|++     ..++....+     .++++|.+++...    ..++.+.+++.||..++..
T Consensus       183 D~V~~~~~~~~~~l~~~~~-----~L~pgG~l~~~~~~~~~~~~~~~~l~~~gf~~~~~~  237 (277)
T 1o54_A          183 DALFLDVPDPWNYIDKCWE-----ALKGGGRFATVCPTTNQVQETLKKLQELPFIRIEVW  237 (277)
T ss_dssp             EEEEECCSCGGGTHHHHHH-----HEEEEEEEEEEESSHHHHHHHHHHHHHSSEEEEEEE
T ss_pred             CEEEECCcCHHHHHHHHHH-----HcCCCCEEEEEeCCHHHHHHHHHHHHHCCCceeEEE
Confidence            99999     122222222     5778887776542    3466778888999876554

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=99.15  E-value=1.4e-10  Score=108.57  Aligned_cols=124  Identities=14%  Similarity=0.181  Sum_probs=81.8

Q ss_pred             CCCCCeEEEECCCccccHHHHHhh-CCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEE
Q 009871           73 GAGRKDVLEVGCGAGNTIFPLIAA-YPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVT  151 (523)
Q Consensus        73 ~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~  151 (523)
                      ..++.+|||+|||+|..+..+++. .+.++|+|+|+|+.|++...+.+.. ..++.++++|+....... ...++||+|+
T Consensus        74 l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~-r~nv~~i~~Da~~~~~~~-~~~~~~D~I~  151 (232)
T 3id6_C           74 IRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQR-RPNIFPLLADARFPQSYK-SVVENVDVLY  151 (232)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHH-CTTEEEEECCTTCGGGTT-TTCCCEEEEE
T ss_pred             CCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh-cCCeEEEEcccccchhhh-ccccceEEEE
Confidence            567899999999999999999987 5678999999999987544332211 157999999998642211 1246899999


Q ss_pred             E-ccccccceeeec--ceEEecCCeEEEee-------------CHHHHHHHHHhCCCcEEEEE
Q 009871          152 M-ERLTGKDQKISE--NFYVRGDGTRAFYF-------------SNDFLTSLFKENGFDVEELG  198 (523)
Q Consensus       152 ~-~~~~~~~~~~~~--~~~~~~~g~~~~~~-------------~~~~l~~ll~~~Gf~~~~~~  198 (523)
                      + .........+..  ..+++++|.+++..             ..++....|+++||++.+..
T Consensus       152 ~d~a~~~~~~il~~~~~~~LkpGG~lvisik~~~~d~t~~~~e~~~~~~~~L~~~gf~~~~~~  214 (232)
T 3id6_C          152 VDIAQPDQTDIAIYNAKFFLKVNGDMLLVIKARSIDVTKDPKEIYKTEVEKLENSNFETIQII  214 (232)
T ss_dssp             ECCCCTTHHHHHHHHHHHHEEEEEEEEEEEC-------CCSSSSTTHHHHHHHHTTEEEEEEE
T ss_pred             ecCCChhHHHHHHHHHHHhCCCCeEEEEEEccCCcccCCCHHHHHHHHHHHHHHCCCEEEEEe
Confidence            9 111000001111  11477777776531             11455677788899987654

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=99.15  E-value=8.6e-11  Score=118.80  Aligned_cols=121  Identities=12%  Similarity=0.077  Sum_probs=86.8

Q ss_pred             CCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCC--CcEEEEEeeccCCccCCCCCCCceeEE
Q 009871           73 GAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQISPSSIDIV  150 (523)
Q Consensus        73 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~V  150 (523)
                      ..++.+|||+|||+|.++..++..++..+|+|+|+|+.|++.|+++....+  .++++.++|+.++    ++++++||+|
T Consensus       215 ~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~----~~~~~~fD~I  290 (373)
T 3tm4_A          215 ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQL----SQYVDSVDFA  290 (373)
T ss_dssp             TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGG----GGTCSCEEEE
T ss_pred             cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhC----CcccCCcCEE
Confidence            457889999999999999999998765579999999999999999875443  4799999999977    5567899999


Q ss_pred             EE-----ccccccc------eeeec--ceEEecCCeEEEeeCHHHHHHHHHhCCCcEEEEE
Q 009871          151 TM-----ERLTGKD------QKISE--NFYVRGDGTRAFYFSNDFLTSLFKENGFDVEELG  198 (523)
Q Consensus       151 ~~-----~~~~~~~------~~~~~--~~~~~~~g~~~~~~~~~~l~~ll~~~Gf~~~~~~  198 (523)
                      ++     .++....      ..+..  ...+ +++..+...+.+.+.+.+.+.||...+..
T Consensus       291 i~npPyg~r~~~~~~~~~ly~~~~~~l~r~l-~g~~~~i~~~~~~~~~~~~~~G~~~~~~~  350 (373)
T 3tm4_A          291 ISNLPYGLKIGKKSMIPDLYMKFFNELAKVL-EKRGVFITTEKKAIEEAIAENGFEIIHHR  350 (373)
T ss_dssp             EEECCCC------CCHHHHHHHHHHHHHHHE-EEEEEEEESCHHHHHHHHHHTTEEEEEEE
T ss_pred             EECCCCCcccCcchhHHHHHHHHHHHHHHHc-CCeEEEEECCHHHHHHHHHHcCCEEEEEE
Confidence            99     1110000      00000  0012 22233334478889999999999976553

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=99.15  E-value=3.1e-10  Score=107.79  Aligned_cols=128  Identities=10%  Similarity=0.054  Sum_probs=94.4

Q ss_pred             CCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhc
Q 009871          331 PTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEEN  410 (523)
Q Consensus       331 ~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~  410 (523)
                      ....++.+|||+|||+|.++..+++. ..+|+++|+++.+++.+++|+..+++.   .++.+...|+.+..       ..
T Consensus        87 ~~~~~~~~vldiG~G~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~---~~~~~~~~d~~~~~-------~~  155 (248)
T 2yvl_A           87 LNLNKEKRVLEFGTGSGALLAVLSEV-AGEVWTFEAVEEFYKTAQKNLKKFNLG---KNVKFFNVDFKDAE-------VP  155 (248)
T ss_dssp             TTCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEECSCHHHHHHHHHHHHHTTCC---TTEEEECSCTTTSC-------CC
T ss_pred             cCCCCCCEEEEeCCCccHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHHcCCC---CcEEEEEcChhhcc-------cC
Confidence            34557889999999999888888887 679999999999999999999887653   35666665554321       12


Q ss_pred             CCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhHHHHHHHHcCCEEEEEcC
Q 009871          411 NEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLVDKWP  485 (523)
Q Consensus       411 ~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~~~~~~~~gf~~~~~~~  485 (523)
                      ..+||+|+++     ......+++.+.++|         +|+|.+++..... .....+.+.+++. |...+.+.
T Consensus       156 ~~~~D~v~~~-----~~~~~~~l~~~~~~L---------~~gG~l~~~~~~~-~~~~~~~~~l~~~-f~~~~~~~  214 (248)
T 2yvl_A          156 EGIFHAAFVD-----VREPWHYLEKVHKSL---------MEGAPVGFLLPTA-NQVIKLLESIENY-FGNLEVVE  214 (248)
T ss_dssp             TTCBSEEEEC-----SSCGGGGHHHHHHHB---------CTTCEEEEEESSH-HHHHHHHHHSTTT-EEEEEEEE
T ss_pred             CCcccEEEEC-----CcCHHHHHHHHHHHc---------CCCCEEEEEeCCH-HHHHHHHHHHHhh-CCcceEEE
Confidence            4589999984     335668899999999         7799999887542 1223455556556 77655544

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=99.15  E-value=2.9e-10  Score=112.13  Aligned_cols=141  Identities=18%  Similarity=0.091  Sum_probs=96.0

Q ss_pred             hHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcC--CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeee
Q 009871          319 SAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGS--ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLE  396 (523)
Q Consensus       319 ~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ld  396 (523)
                      ++.+++..+.    ..++.+|||+|||+|+.+..++...  ..+|+++|+++.+++.+++|+..+++.    ++.+...|
T Consensus       106 ~s~l~~~~l~----~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~----~v~~~~~D  177 (315)
T 1ixk_A          106 SSMYPPVALD----PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVL----NVILFHSS  177 (315)
T ss_dssp             HHHHHHHHHC----CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCC----SEEEESSC
T ss_pred             HHHHHHHHhC----CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCC----eEEEEECC
Confidence            4455555552    3467899999999999998888763  368999999999999999999998763    45655444


Q ss_pred             cCCCCcchhhhhhcCCCccEEEEcccc------CC-CCC---------------hHHHHHHHHHHhhccCCCCCCCCCcE
Q 009871          397 WGNRDHIEAIKEENNEGFEVILGTDVS------YI-PEA---------------ILPLFATAKELTASSNKSLREDQQPA  454 (523)
Q Consensus       397 w~~~~~~~~~~~~~~~~fD~Ii~~d~~------y~-~~~---------------~~~l~~~l~~ll~~~~~~~~~~~~g~  454 (523)
                      ..+.   .   . ..++||+|++....      .. ++.               ...+++.+.++|         +|||.
T Consensus       178 ~~~~---~---~-~~~~fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~L---------kpGG~  241 (315)
T 1ixk_A          178 SLHI---G---E-LNVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVL---------KPGGI  241 (315)
T ss_dssp             GGGG---G---G-GCCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHE---------EEEEE
T ss_pred             hhhc---c---c-ccccCCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhC---------CCCCE
Confidence            3221   1   1 24689999984221      11 110               157888899999         67999


Q ss_pred             EEEEEeecC--CChhHHHHHHHHcCCEEEEE
Q 009871          455 FILCHIFRQ--VDEPSMLSAATQCGFRLVDK  483 (523)
Q Consensus       455 ~~l~~~~r~--~~~~~~~~~~~~~gf~~~~~  483 (523)
                      ++++...-.  ..+..+...+++.||++..+
T Consensus       242 lv~stcs~~~~Ene~~v~~~l~~~~~~~~~~  272 (315)
T 1ixk_A          242 LVYSTCSLEPEENEFVIQWALDNFDVELLPL  272 (315)
T ss_dssp             EEEEESCCCGGGTHHHHHHHHHHSSEEEECC
T ss_pred             EEEEeCCCChHHhHHHHHHHHhcCCCEEecC
Confidence            988654322  22333445567889887654

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=99.15  E-value=1e-10  Score=117.06  Aligned_cols=104  Identities=18%  Similarity=0.108  Sum_probs=80.9

Q ss_pred             CCCeEEEECCCccHHHHHHHhcCC-CEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCC
Q 009871          335 AGKKVLELGCGCGGICSMVAAGSA-DLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG  413 (523)
Q Consensus       335 ~~~~VLElG~G~G~l~~~~a~~~~-~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~  413 (523)
                      ++.+|||||||+|.++..++..++ .+|+++|+|+.+++.+++|+..|+..     +.+...|..+         ..+++
T Consensus       196 ~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~-----~~~~~~d~~~---------~~~~~  261 (343)
T 2pjd_A          196 TKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVE-----GEVFASNVFS---------EVKGR  261 (343)
T ss_dssp             CCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCC-----CEEEECSTTT---------TCCSC
T ss_pred             CCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCC-----CEEEEccccc---------cccCC
Confidence            466999999999999988888875 48999999999999999999988764     2333322221         12468


Q ss_pred             ccEEEEccccCC-----CCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee
Q 009871          414 FEVILGTDVSYI-----PEAILPLFATAKELTASSNKSLREDQQPAFILCHIF  461 (523)
Q Consensus       414 fD~Ii~~d~~y~-----~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~  461 (523)
                      ||+|+++.++++     ......+++.+.++|         +|||.+++....
T Consensus       262 fD~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~L---------kpgG~l~i~~~~  305 (343)
T 2pjd_A          262 FDMIISNPPFHDGMQTSLDAAQTLIRGAVRHL---------NSGGELRIVANA  305 (343)
T ss_dssp             EEEEEECCCCCSSSHHHHHHHHHHHHHHGGGE---------EEEEEEEEEEET
T ss_pred             eeEEEECCCcccCccCCHHHHHHHHHHHHHhC---------CCCcEEEEEEcC
Confidence            999999988764     335678899999999         679999887654

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=99.15  E-value=8.6e-12  Score=118.31  Aligned_cols=123  Identities=17%  Similarity=0.056  Sum_probs=87.3

Q ss_pred             CCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCc
Q 009871          335 AGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGF  414 (523)
Q Consensus       335 ~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~f  414 (523)
                      ++.+|||+|||+|.++..++..+ .+|+++|+|+.+++.+++|+..+++.   .++.+...|+.+.        ....+|
T Consensus        78 ~~~~vLD~gcG~G~~~~~la~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~---~~~~~~~~d~~~~--------~~~~~~  145 (241)
T 3gdh_A           78 KCDVVVDAFCGVGGNTIQFALTG-MRVIAIDIDPVKIALARNNAEVYGIA---DKIEFICGDFLLL--------ASFLKA  145 (241)
T ss_dssp             CCSEEEETTCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCG---GGEEEEESCHHHH--------GGGCCC
T ss_pred             CCCEEEECccccCHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHHcCCC---cCeEEEECChHHh--------cccCCC
Confidence            67899999999999998888886 78999999999999999999998764   4577766555322        124689


Q ss_pred             cEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEE-----------eecCCChhHHHHHHHHcCC
Q 009871          415 EVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCH-----------IFRQVDEPSMLSAATQCGF  478 (523)
Q Consensus       415 D~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~-----------~~r~~~~~~~~~~~~~~gf  478 (523)
                      |+|+++.++.+.......+..+.++|         +|+|.+++..           ..+......+...+...|.
T Consensus       146 D~v~~~~~~~~~~~~~~~~~~~~~~L---------~pgG~~i~~~~~~~~~~~~~~lp~~~~~~~~~~~l~~~g~  211 (241)
T 3gdh_A          146 DVVFLSPPWGGPDYATAETFDIRTMM---------SPDGFEIFRLSKKITNNIVYFLPRNADIDQVASLAGPGGQ  211 (241)
T ss_dssp             SEEEECCCCSSGGGGGSSSBCTTTSC---------SSCHHHHHHHHHHHCSCEEEEEETTBCHHHHHHTTCTTCC
T ss_pred             CEEEECCCcCCcchhhhHHHHHHhhc---------CCcceeHHHHHHhhCCceEEECCCCCCHHHHHHHhccCCC
Confidence            99999877776555554555566666         5566654332           2334444555555545443

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=99.14  E-value=1.1e-10  Score=109.26  Aligned_cols=112  Identities=18%  Similarity=0.172  Sum_probs=82.7

Q ss_pred             CCCCeEEEECCCccHHHHHHHhcC--CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcC
Q 009871          334 VAGKKVLELGCGCGGICSMVAAGS--ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENN  411 (523)
Q Consensus       334 ~~~~~VLElG~G~G~l~~~~a~~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~  411 (523)
                      .++.+|||||||+|..+..++...  ..+|+++|+++.+++.+++|+..++..   .++.+...|..+.  ...+.....
T Consensus        57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~---~~v~~~~~d~~~~--~~~~~~~~~  131 (223)
T 3duw_A           57 QGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLN---DRVEVRTGLALDS--LQQIENEKY  131 (223)
T ss_dssp             HTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCT---TTEEEEESCHHHH--HHHHHHTTC
T ss_pred             hCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC---CcEEEEEcCHHHH--HHHHHhcCC
Confidence            367899999999998888888773  469999999999999999999988775   4577766554321  111111112


Q ss_pred             CCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec
Q 009871          412 EGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFR  462 (523)
Q Consensus       412 ~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r  462 (523)
                      ++||+|+...   .......+++.+.++|         +|||.+++.....
T Consensus       132 ~~fD~v~~d~---~~~~~~~~l~~~~~~L---------~pgG~lv~~~~~~  170 (223)
T 3duw_A          132 EPFDFIFIDA---DKQNNPAYFEWALKLS---------RPGTVIIGDNVVR  170 (223)
T ss_dssp             CCCSEEEECS---CGGGHHHHHHHHHHTC---------CTTCEEEEESCSG
T ss_pred             CCcCEEEEcC---CcHHHHHHHHHHHHhc---------CCCcEEEEeCCCc
Confidence            5799999752   2456788999999999         7799888765543

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=99.14  E-value=1.1e-10  Score=110.08  Aligned_cols=107  Identities=15%  Similarity=0.104  Sum_probs=82.8

Q ss_pred             CCCCeEEEECCCccHHHHHHHhcC-CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCC
Q 009871          334 VAGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNE  412 (523)
Q Consensus       334 ~~~~~VLElG~G~G~l~~~~a~~~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~  412 (523)
                      .++.+|||||||+|..+..++... ..+|+++|+++.+++.+++|+..+++.   .++.+...|..+.  .   .....+
T Consensus        70 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~---~~v~~~~~d~~~~--~---~~~~~~  141 (232)
T 3ntv_A           70 NNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFE---NQVRIIEGNALEQ--F---ENVNDK  141 (232)
T ss_dssp             HTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCT---TTEEEEESCGGGC--H---HHHTTS
T ss_pred             cCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC---CcEEEEECCHHHH--H---HhhccC
Confidence            367899999999998888888753 569999999999999999999988764   4677766555432  1   101256


Q ss_pred             CccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEe
Q 009871          413 GFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHI  460 (523)
Q Consensus       413 ~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~  460 (523)
                      +||+|++.   ........+++.+.++|         +|||.+++...
T Consensus       142 ~fD~V~~~---~~~~~~~~~l~~~~~~L---------kpgG~lv~d~~  177 (232)
T 3ntv_A          142 VYDMIFID---AAKAQSKKFFEIYTPLL---------KHQGLVITDNV  177 (232)
T ss_dssp             CEEEEEEE---TTSSSHHHHHHHHGGGE---------EEEEEEEEECT
T ss_pred             CccEEEEc---CcHHHHHHHHHHHHHhc---------CCCeEEEEeeC
Confidence            89999975   34667888999999999         67999887433

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=99.14  E-value=7e-11  Score=112.61  Aligned_cols=78  Identities=15%  Similarity=0.017  Sum_probs=58.9

Q ss_pred             hhhhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCC-CCCCCc
Q 009871           68 GRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSR-QISPSS  146 (523)
Q Consensus        68 ~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~-~~~~~~  146 (523)
                      .+.+...++.+|||||||+|.++..|+++  +.+|+|+|+|+.|++.|+++....     +++.++.+.+.+. ...+++
T Consensus        38 l~~l~l~~g~~VLDlGcGtG~~a~~La~~--g~~V~gvD~S~~ml~~Ar~~~~~~-----~v~~~~~~~~~~~~~~~~~~  110 (261)
T 3iv6_A           38 IFLENIVPGSTVAVIGASTRFLIEKALER--GASVTVFDFSQRMCDDLAEALADR-----CVTIDLLDITAEIPKELAGH  110 (261)
T ss_dssp             HHTTTCCTTCEEEEECTTCHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTSSS-----CCEEEECCTTSCCCGGGTTC
T ss_pred             HHhcCCCCcCEEEEEeCcchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhc-----cceeeeeecccccccccCCC
Confidence            34455567889999999999999999988  568999999999999999986532     3455555443200 122578


Q ss_pred             eeEEEE
Q 009871          147 IDIVTM  152 (523)
Q Consensus       147 fD~V~~  152 (523)
                      ||+|++
T Consensus       111 fD~Vv~  116 (261)
T 3iv6_A          111 FDFVLN  116 (261)
T ss_dssp             CSEEEE
T ss_pred             ccEEEE
Confidence            999999

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=99.14  E-value=7.1e-11  Score=110.44  Aligned_cols=131  Identities=13%  Similarity=0.086  Sum_probs=88.4

Q ss_pred             CCCeEEEECCCccHHHHHHHhcC--CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhh-hhcC
Q 009871          335 AGKKVLELGCGCGGICSMVAAGS--ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIK-EENN  411 (523)
Q Consensus       335 ~~~~VLElG~G~G~l~~~~a~~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~-~~~~  411 (523)
                      ++++|||||||+|..+..++...  ..+|+++|+++.+++.+++|+..++..   .++.+...|..+.  +..+. ....
T Consensus        58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~---~~v~~~~~d~~~~--l~~~~~~~~~  132 (221)
T 3u81_A           58 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQ---DKVTILNGASQDL--IPQLKKKYDV  132 (221)
T ss_dssp             CCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCG---GGEEEEESCHHHH--GGGTTTTSCC
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCC---CceEEEECCHHHH--HHHHHHhcCC
Confidence            56899999999998888888752  469999999999999999999998774   4677766554321  11110 0112


Q ss_pred             CCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhHHHHHHHHcC-CEEE
Q 009871          412 EGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCG-FRLV  481 (523)
Q Consensus       412 ~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~~~~~~~~g-f~~~  481 (523)
                      ++||+|+......+......++..+ ++|         +|||.+++....+ .....+.+.+++.. |+..
T Consensus       133 ~~fD~V~~d~~~~~~~~~~~~~~~~-~~L---------kpgG~lv~~~~~~-~~~~~~~~~l~~~~~~~~~  192 (221)
T 3u81_A          133 DTLDMVFLDHWKDRYLPDTLLLEKC-GLL---------RKGTVLLADNVIV-PGTPDFLAYVRGSSSFECT  192 (221)
T ss_dssp             CCCSEEEECSCGGGHHHHHHHHHHT-TCC---------CTTCEEEESCCCC-CCCHHHHHHHHHCTTEEEE
T ss_pred             CceEEEEEcCCcccchHHHHHHHhc-ccc---------CCCeEEEEeCCCC-cchHHHHHHHhhCCCceEE
Confidence            6899999864333222222345555 778         6799998866553 34456777776654 4443

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=99.14  E-value=1e-10  Score=113.55  Aligned_cols=105  Identities=23%  Similarity=0.264  Sum_probs=79.7

Q ss_pred             CCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCc
Q 009871          335 AGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGF  414 (523)
Q Consensus       335 ~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~f  414 (523)
                      ++.+|||+|||+|.++..++.....+|+++|+|+.+++.+++|+..+++.   .++.+...||.+.  .       .++|
T Consensus       123 ~~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~A~~n~~~~~l~---~~v~~~~~D~~~~--~-------~~~f  190 (284)
T 1nv8_A          123 GIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVS---DRFFVRKGEFLEP--F-------KEKF  190 (284)
T ss_dssp             TCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCT---TSEEEEESSTTGG--G-------GGGT
T ss_pred             CCCEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC---CceEEEECcchhh--c-------cccc
Confidence            56799999999999988888774468999999999999999999998774   4688888777642  1       1368


Q ss_pred             ---cEEEEccc------------cCCCC-------ChHHHHHHHH-HHhhccCCCCCCCCCcEEEEEEe
Q 009871          415 ---EVILGTDV------------SYIPE-------AILPLFATAK-ELTASSNKSLREDQQPAFILCHI  460 (523)
Q Consensus       415 ---D~Ii~~d~------------~y~~~-------~~~~l~~~l~-~ll~~~~~~~~~~~~g~~~l~~~  460 (523)
                         |+|+++..            .|.+.       +-..+++.+. +.+         +|||.+++...
T Consensus       191 ~~~D~IvsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l---------~pgG~l~~e~~  250 (284)
T 1nv8_A          191 ASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYD---------TSGKIVLMEIG  250 (284)
T ss_dssp             TTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCC---------CTTCEEEEECC
T ss_pred             CCCCEEEEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcC---------CCCCEEEEEEC
Confidence               99999732            21111       1126788888 888         67999998654

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=99.14  E-value=6.9e-10  Score=104.06  Aligned_cols=132  Identities=16%  Similarity=0.163  Sum_probs=90.3

Q ss_pred             CCCCCCeEEEECCCccHHHHHHHhc-C-CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhh
Q 009871          332 TIVAGKKVLELGCGCGGICSMVAAG-S-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEE  409 (523)
Q Consensus       332 ~~~~~~~VLElG~G~G~l~~~~a~~-~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~  409 (523)
                      ...++.+|||+|||+|.++..++.. + ..+|+++|+++.+++.+++|+..+      .++.+...|..+....   ..+
T Consensus        70 ~~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~------~~v~~~~~d~~~~~~~---~~~  140 (227)
T 1g8a_A           70 PIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER------RNIVPILGDATKPEEY---RAL  140 (227)
T ss_dssp             CCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC------TTEEEEECCTTCGGGG---TTT
T ss_pred             CCCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc------CCCEEEEccCCCcchh---hcc
Confidence            3557889999999999988888876 4 369999999999999999988764      3566666555432111   112


Q ss_pred             cCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCC----hh----HHHHHHHHcCCEEE
Q 009871          410 NNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVD----EP----SMLSAATQCGFRLV  481 (523)
Q Consensus       410 ~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~----~~----~~~~~~~~~gf~~~  481 (523)
                       ..+||+|++...  .+.....+++.+.++|         +|||.+++....+..+    ..    .-+..+.+. |++.
T Consensus       141 -~~~~D~v~~~~~--~~~~~~~~l~~~~~~L---------kpgG~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-f~~~  207 (227)
T 1g8a_A          141 -VPKVDVIFEDVA--QPTQAKILIDNAEVYL---------KRGGYGMIAVKSRSIDVTKEPEQVFREVERELSEY-FEVI  207 (227)
T ss_dssp             -CCCEEEEEECCC--STTHHHHHHHHHHHHE---------EEEEEEEEEEEGGGTCTTSCHHHHHHHHHHHHHTT-SEEE
T ss_pred             -cCCceEEEECCC--CHhHHHHHHHHHHHhc---------CCCCEEEEEEecCCCCCCCChhhhhHHHHHHHHhh-ceee
Confidence             358999997533  3333345599999999         6799998885443221    11    122334566 9988


Q ss_pred             EEcC
Q 009871          482 DKWP  485 (523)
Q Consensus       482 ~~~~  485 (523)
                      +...
T Consensus       208 ~~~~  211 (227)
T 1g8a_A          208 ERLN  211 (227)
T ss_dssp             EEEE
T ss_pred             eEec
Confidence            7765

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=99.14  E-value=1.2e-10  Score=105.83  Aligned_cols=121  Identities=21%  Similarity=0.244  Sum_probs=84.7

Q ss_pred             hhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCC--CcEEEEEeeccCCccCCCCCC-Cc
Q 009871           70 YFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQISP-SS  146 (523)
Q Consensus        70 ~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~-~~  146 (523)
                      .+...++.+|||+|||+|..+..+++.+  .+|+|+|+|+.+++.|+++....+  .++.+.++|+.+.     +++ ++
T Consensus        28 ~~~~~~~~~vldiG~G~G~~~~~l~~~~--~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~~  100 (192)
T 1l3i_A           28 LAEPGKNDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEA-----LCKIPD  100 (192)
T ss_dssp             HHCCCTTCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHH-----HTTSCC
T ss_pred             hcCCCCCCEEEEECCCCCHHHHHHHHhc--CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHh-----cccCCC
Confidence            3445678899999999999999999886  789999999999999998764332  5799999998751     222 58


Q ss_pred             eeEEEEccccccceeeec--ceEEecCCeEEEee----CHHHHHHHHHhCCCcEEEE
Q 009871          147 IDIVTMERLTGKDQKISE--NFYVRGDGTRAFYF----SNDFLTSLFKENGFDVEEL  197 (523)
Q Consensus       147 fD~V~~~~~~~~~~~~~~--~~~~~~~g~~~~~~----~~~~l~~ll~~~Gf~~~~~  197 (523)
                      ||+|++.........+..  ...++++|.+++..    +..++.+++++.||.+..+
T Consensus       101 ~D~v~~~~~~~~~~~~l~~~~~~l~~gG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~  157 (192)
T 1l3i_A          101 IDIAVVGGSGGELQEILRIIKDKLKPGGRIIVTAILLETKFEAMECLRDLGFDVNIT  157 (192)
T ss_dssp             EEEEEESCCTTCHHHHHHHHHHTEEEEEEEEEEECBHHHHHHHHHHHHHTTCCCEEE
T ss_pred             CCEEEECCchHHHHHHHHHHHHhcCCCcEEEEEecCcchHHHHHHHHHHCCCceEEE
Confidence            999999211111110000  11467777776532    4567788899999965433

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=99.13  E-value=1.7e-10  Score=117.83  Aligned_cols=135  Identities=18%  Similarity=0.209  Sum_probs=96.9

Q ss_pred             CCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCc
Q 009871          335 AGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGF  414 (523)
Q Consensus       335 ~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~f  414 (523)
                      ++.+|||+|||+|.++..++..++.+|+++|+++.+++.+++|+..|++.   .++.+...|..+.  ...+ .....+|
T Consensus       217 ~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n~~~n~~~---~~v~~~~~d~~~~--~~~~-~~~~~~f  290 (396)
T 2as0_A          217 PGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVE---DRMKFIVGSAFEE--MEKL-QKKGEKF  290 (396)
T ss_dssp             TTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCG---GGEEEEESCHHHH--HHHH-HHTTCCE
T ss_pred             CCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC---ccceEEECCHHHH--HHHH-HhhCCCC
Confidence            77899999999999999888887779999999999999999999999874   2566665544321  1100 0124689


Q ss_pred             cEEEEccccCCC---------CChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhHHH----HHHHHcCCEEE
Q 009871          415 EVILGTDVSYIP---------EAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSML----SAATQCGFRLV  481 (523)
Q Consensus       415 D~Ii~~d~~y~~---------~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~~----~~~~~~gf~~~  481 (523)
                      |+|++....+..         .....++..+.++|         +|||.++++........+.+.    +.+.+.|..+.
T Consensus       291 D~Vi~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~L---------kpgG~lv~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  361 (396)
T 2as0_A          291 DIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLV---------KDGGILVTCSCSQHVDLQMFKDMIIAAGAKAGKFLK  361 (396)
T ss_dssp             EEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTE---------EEEEEEEEEECCTTSCHHHHHHHHHHHHHHTTEEEE
T ss_pred             CEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHhc---------CCCcEEEEEECCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence            999985444332         33566777777788         679999888777666654443    34556777776


Q ss_pred             EEc
Q 009871          482 DKW  484 (523)
Q Consensus       482 ~~~  484 (523)
                      .+.
T Consensus       362 ~i~  364 (396)
T 2as0_A          362 MLE  364 (396)
T ss_dssp             ESS
T ss_pred             EEe
Confidence            554

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=99.13  E-value=2.4e-10  Score=113.87  Aligned_cols=119  Identities=13%  Similarity=0.125  Sum_probs=90.4

Q ss_pred             CCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCc
Q 009871          335 AGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGF  414 (523)
Q Consensus       335 ~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~f  414 (523)
                      ++.+|||+|||+|.++.. ++ ++.+|+++|+|+.+++.+++|+..|++.   .++.+...|..+.         . .+|
T Consensus       195 ~~~~VLDlg~G~G~~~l~-a~-~~~~V~~vD~s~~ai~~a~~n~~~n~l~---~~v~~~~~D~~~~---------~-~~f  259 (336)
T 2yx1_A          195 LNDVVVDMFAGVGPFSIA-CK-NAKKIYAIDINPHAIELLKKNIKLNKLE---HKIIPILSDVREV---------D-VKG  259 (336)
T ss_dssp             TTCEEEETTCTTSHHHHH-TT-TSSEEEEEESCHHHHHHHHHHHHHTTCT---TTEEEEESCGGGC---------C-CCE
T ss_pred             CCCEEEEccCccCHHHHh-cc-CCCEEEEEECCHHHHHHHHHHHHHcCCC---CcEEEEECChHHh---------c-CCC
Confidence            678999999999988888 66 6789999999999999999999999874   3566665554332         1 589


Q ss_pred             cEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhHHHHHHHHc-CCEEEEE
Q 009871          415 EVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQC-GFRLVDK  483 (523)
Q Consensus       415 D~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~~~~~~~~-gf~~~~~  483 (523)
                      |+|++.. .+.   ...++..+.++|         +|+|.++++.....  ...+.+.+.+. |+++..+
T Consensus       260 D~Vi~dp-P~~---~~~~l~~~~~~L---------~~gG~l~~~~~~~~--~~~~~~~l~~~~~~~i~~~  314 (336)
T 2yx1_A          260 NRVIMNL-PKF---AHKFIDKALDIV---------EEGGVIHYYTIGKD--FDKAIKLFEKKCDCEVLEK  314 (336)
T ss_dssp             EEEEECC-TTT---GGGGHHHHHHHE---------EEEEEEEEEEEESS--SHHHHHHHHHHSEEEEEEE
T ss_pred             cEEEECC-cHh---HHHHHHHHHHHc---------CCCCEEEEEEeecC--chHHHHHHHHhcCCcEEEE
Confidence            9999843 332   347888899999         56898888766544  45566777666 6665443

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=99.12  E-value=2.1e-10  Score=106.58  Aligned_cols=120  Identities=19%  Similarity=0.189  Sum_probs=88.1

Q ss_pred             HHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCc
Q 009871          323 MAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDH  402 (523)
Q Consensus       323 la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~  402 (523)
                      +.+++...   .++.+|||||||+|.++..+    +.+|+++|+++.                   .+.+...|..+.  
T Consensus        58 ~~~~l~~~---~~~~~vLDiG~G~G~~~~~l----~~~v~~~D~s~~-------------------~~~~~~~d~~~~--  109 (215)
T 2zfu_A           58 IARDLRQR---PASLVVADFGCGDCRLASSI----RNPVHCFDLASL-------------------DPRVTVCDMAQV--  109 (215)
T ss_dssp             HHHHHHTS---CTTSCEEEETCTTCHHHHHC----CSCEEEEESSCS-------------------STTEEESCTTSC--
T ss_pred             HHHHHhcc---CCCCeEEEECCcCCHHHHHh----hccEEEEeCCCC-------------------CceEEEeccccC--
Confidence            44445432   36779999999999766554    257999999986                   122333343321  


Q ss_pred             chhhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecC-CChhHHHHHHHHcCCEEE
Q 009871          403 IEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ-VDEPSMLSAATQCGFRLV  481 (523)
Q Consensus       403 ~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~-~~~~~~~~~~~~~gf~~~  481 (523)
                           ++++++||+|+++.++++ .....+++.+.++|         +|||.++++..... .+...+.+.+++.||++.
T Consensus       110 -----~~~~~~fD~v~~~~~l~~-~~~~~~l~~~~~~L---------~~gG~l~i~~~~~~~~~~~~~~~~l~~~Gf~~~  174 (215)
T 2zfu_A          110 -----PLEDESVDVAVFCLSLMG-TNIRDFLEEANRVL---------KPGGLLKVAEVSSRFEDVRTFLRAVTKLGFKIV  174 (215)
T ss_dssp             -----SCCTTCEEEEEEESCCCS-SCHHHHHHHHHHHE---------EEEEEEEEEECGGGCSCHHHHHHHHHHTTEEEE
T ss_pred             -----CCCCCCEeEEEEehhccc-cCHHHHHHHHHHhC---------CCCeEEEEEEcCCCCCCHHHHHHHHHHCCCEEE
Confidence                 234568999999999974 78899999999999         67999998766543 356778899999999998


Q ss_pred             EEcC
Q 009871          482 DKWP  485 (523)
Q Consensus       482 ~~~~  485 (523)
                      ....
T Consensus       175 ~~~~  178 (215)
T 2zfu_A          175 SKDL  178 (215)
T ss_dssp             EEEC
T ss_pred             EEec
Confidence            7644

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=99.12  E-value=5e-11  Score=124.05  Aligned_cols=116  Identities=18%  Similarity=0.246  Sum_probs=88.4

Q ss_pred             HHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCC
Q 009871          322 LMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRD  401 (523)
Q Consensus       322 ~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~  401 (523)
                      .+.+.+.......++.+|||||||+|.++..++..+..+|+++|+++ +++.|++|+..|++.   .++.+...|+.+..
T Consensus       145 ~~~~~il~~l~~~~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~-~l~~A~~~~~~~gl~---~~v~~~~~d~~~~~  220 (480)
T 3b3j_A          145 TYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLT---DRIVVIPGKVEEVS  220 (480)
T ss_dssp             HHHHHHHHTGGGTTTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHH-HHHHHHHHHHHTTCT---TTEEEEESCTTTCC
T ss_pred             HHHHHHHHhhhhcCCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHH-HHHHHHHHHHHcCCC---CcEEEEECchhhCc
Confidence            34455555555557889999999999888888887777999999998 999999999998875   57888887776531


Q ss_pred             cchhhhhhcCCCccEEEEccccCCC--CChHHHHHHHHHHhhccCCCCCCCCCcEEEEE
Q 009871          402 HIEAIKEENNEGFEVILGTDVSYIP--EAILPLFATAKELTASSNKSLREDQQPAFILC  458 (523)
Q Consensus       402 ~~~~~~~~~~~~fD~Ii~~d~~y~~--~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~  458 (523)
                             + +++||+|+++.++|+.  +.....+..+.++|         +|||.+++.
T Consensus       221 -------~-~~~fD~Ivs~~~~~~~~~e~~~~~l~~~~~~L---------kpgG~li~~  262 (480)
T 3b3j_A          221 -------L-PEQVDIIISEPMGYMLFNERMLESYLHAKKYL---------KPSGNMFPT  262 (480)
T ss_dssp             -------C-SSCEEEEECCCCHHHHTCHHHHHHHHHGGGGE---------EEEEEEESC
T ss_pred             -------c-CCCeEEEEEeCchHhcCcHHHHHHHHHHHHhc---------CCCCEEEEE
Confidence                   1 3589999998776653  33455566667888         679988853

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=99.12  E-value=2.5e-10  Score=110.05  Aligned_cols=71  Identities=23%  Similarity=0.364  Sum_probs=63.3

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM  152 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~  152 (523)
                      .++.+|||||||+|.++..+++..++.+|+|+|+|+.|++.|+++.    .++.+.++|+.++    ++++++||+|++
T Consensus        84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~----~~~~~~~~d~~~~----~~~~~~fD~v~~  154 (269)
T 1p91_A           84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY----PQVTFCVASSHRL----PFSDTSMDAIIR  154 (269)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC----TTSEEEECCTTSC----SBCTTCEEEEEE
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhC----CCcEEEEcchhhC----CCCCCceeEEEE
Confidence            4678999999999999999999877789999999999999999874    4578999999877    667889999998

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=99.12  E-value=3.8e-10  Score=108.95  Aligned_cols=105  Identities=14%  Similarity=0.103  Sum_probs=81.8

Q ss_pred             CCCCCeEEEECCCccHHHHHHHhcC-CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcC
Q 009871          333 IVAGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENN  411 (523)
Q Consensus       333 ~~~~~~VLElG~G~G~l~~~~a~~~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~  411 (523)
                      ..++.+|||+|||+|.++..++..+ +.+|+++|+++.+++.|++|++.|++.    ++.+...|..+. .      . .
T Consensus       117 ~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~----~~~~~~~d~~~~-~------~-~  184 (272)
T 3a27_A          117 SNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLN----NVIPILADNRDV-E------L-K  184 (272)
T ss_dssp             CCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCS----SEEEEESCGGGC-C------C-T
T ss_pred             cCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC----CEEEEECChHHc-C------c-c
Confidence            3478899999999999999888874 569999999999999999999999874    355555444322 1      1 3


Q ss_pred             CCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec
Q 009871          412 EGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFR  462 (523)
Q Consensus       412 ~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r  462 (523)
                      .+||+|++....    ....++..+.++|         +|+|.++++....
T Consensus       185 ~~~D~Vi~d~p~----~~~~~l~~~~~~L---------kpgG~l~~s~~~~  222 (272)
T 3a27_A          185 DVADRVIMGYVH----KTHKFLDKTFEFL---------KDRGVIHYHETVA  222 (272)
T ss_dssp             TCEEEEEECCCS----SGGGGHHHHHHHE---------EEEEEEEEEEEEE
T ss_pred             CCceEEEECCcc----cHHHHHHHHHHHc---------CCCCEEEEEEcCc
Confidence            589999986442    6778889999999         6789888766554

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=99.12  E-value=5.1e-10  Score=102.78  Aligned_cols=117  Identities=13%  Similarity=0.012  Sum_probs=79.6

Q ss_pred             CCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCC
Q 009871          334 VAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG  413 (523)
Q Consensus       334 ~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~  413 (523)
                      .++.+|||+|||+|.++..++..+..+|+++|+++.+++.+++|+.         ++.+...|..+         + +++
T Consensus        50 ~~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~---------~~~~~~~d~~~---------~-~~~  110 (200)
T 1ne2_A           50 IGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG---------GVNFMVADVSE---------I-SGK  110 (200)
T ss_dssp             SBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT---------TSEEEECCGGG---------C-CCC
T ss_pred             CCCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHhcC---------CCEEEECcHHH---------C-CCC
Confidence            4778999999999998888888876789999999999999999865         23444444322         1 258


Q ss_pred             ccEEEEccccCCCCC--hHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhHHHHHHHHcCCEEEEEc
Q 009871          414 FEVILGTDVSYIPEA--ILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLVDKW  484 (523)
Q Consensus       414 fD~Ii~~d~~y~~~~--~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~~~~~~~~gf~~~~~~  484 (523)
                      ||+|+++.++++...  ...+++.+.+++           |+ ++++...  .....+.+.+.+.| ++..+.
T Consensus       111 ~D~v~~~~p~~~~~~~~~~~~l~~~~~~~-----------g~-~~~~~~~--~~~~~~~~~~~~~g-~~~~~~  168 (200)
T 1ne2_A          111 YDTWIMNPPFGSVVKHSDRAFIDKAFETS-----------MW-IYSIGNA--KARDFLRREFSARG-DVFREE  168 (200)
T ss_dssp             EEEEEECCCC-------CHHHHHHHHHHE-----------EE-EEEEEEG--GGHHHHHHHHHHHE-EEEEEE
T ss_pred             eeEEEECCCchhccCchhHHHHHHHHHhc-----------Cc-EEEEEcC--chHHHHHHHHHHCC-CEEEEE
Confidence            999999877766432  345666666665           44 4444332  23345667778888 776654

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=99.12  E-value=1.2e-10  Score=110.97  Aligned_cols=115  Identities=13%  Similarity=0.095  Sum_probs=78.4

Q ss_pred             CCCeEEEECCCccHHHHHHHhc--C-CCEEEEEcCChHHHHHHHHHHHhc---CCCCC----------------------
Q 009871          335 AGKKVLELGCGCGGICSMVAAG--S-ADLVVATDGDSIALDLLAQNVTAN---LKPPF----------------------  386 (523)
Q Consensus       335 ~~~~VLElG~G~G~l~~~~a~~--~-~~~V~~~D~~~~~l~~~~~n~~~n---~~~~~----------------------  386 (523)
                      ++.+|||+|||+|.++..++..  . ..+|+++|+|+.+++.|++|+..+   ++...                      
T Consensus        51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (250)
T 1o9g_A           51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQA  130 (250)
T ss_dssp             SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred             CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhhh
Confidence            5679999999999888888776  2 458999999999999999998876   33100                      


Q ss_pred             CCceE-------------EEeeecCCCCcchhhhhh-cCCCccEEEEccccCCCC---------ChHHHHHHHHHHhhcc
Q 009871          387 LAKLI-------------TKRLEWGNRDHIEAIKEE-NNEGFEVILGTDVSYIPE---------AILPLFATAKELTASS  443 (523)
Q Consensus       387 ~~~v~-------------~~~ldw~~~~~~~~~~~~-~~~~fD~Ii~~d~~y~~~---------~~~~l~~~l~~ll~~~  443 (523)
                      ..++.             +...|+.+....   ... ...+||+|+++.+.....         ....+++.+.++|   
T Consensus       131 ~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~---~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~L---  204 (250)
T 1o9g_A          131 ARRLRERLTAEGGALPCAIRTADVFDPRAL---SAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASAL---  204 (250)
T ss_dssp             HHHHHHHHHHTTSSCCEEEEECCTTCGGGH---HHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHS---
T ss_pred             hhhhhhhccccccccccceeeccccccccc---ccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhc---
Confidence            00033             555554432100   000 234899999986544332         2458899999999   


Q ss_pred             CCCCCCCCCcEEEEEEee
Q 009871          444 NKSLREDQQPAFILCHIF  461 (523)
Q Consensus       444 ~~~~~~~~~g~~~l~~~~  461 (523)
                            +|||.++++...
T Consensus       205 ------kpgG~l~~~~~~  216 (250)
T 1o9g_A          205 ------PAHAVIAVTDRS  216 (250)
T ss_dssp             ------CTTCEEEEEESS
T ss_pred             ------CCCcEEEEeCcc
Confidence                  779999985443

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=99.12  E-value=4.6e-10  Score=104.85  Aligned_cols=108  Identities=12%  Similarity=0.136  Sum_probs=80.4

Q ss_pred             CCCeEEEECCCccHHHHHHHhcC--CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCC
Q 009871          335 AGKKVLELGCGCGGICSMVAAGS--ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNE  412 (523)
Q Consensus       335 ~~~~VLElG~G~G~l~~~~a~~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~  412 (523)
                      ++.+|||||||+|..+..++...  ..+|+++|+++.+++.+++|+..++...  .++.+...|..     +.+..+..+
T Consensus        56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~--~~i~~~~gda~-----~~l~~~~~~  128 (221)
T 3dr5_A           56 GSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSP--SRVRFLLSRPL-----DVMSRLAND  128 (221)
T ss_dssp             TCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCG--GGEEEECSCHH-----HHGGGSCTT
T ss_pred             CCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCc--CcEEEEEcCHH-----HHHHHhcCC
Confidence            34599999999998888887752  4699999999999999999999987631  35666543322     111223357


Q ss_pred             CccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee
Q 009871          413 GFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIF  461 (523)
Q Consensus       413 ~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~  461 (523)
                      +||+|+..   ........+++.+.++|         +|||.+++....
T Consensus       129 ~fD~V~~d---~~~~~~~~~l~~~~~~L---------kpGG~lv~dn~~  165 (221)
T 3dr5_A          129 SYQLVFGQ---VSPMDLKALVDAAWPLL---------RRGGALVLADAL  165 (221)
T ss_dssp             CEEEEEEC---CCTTTHHHHHHHHHHHE---------EEEEEEEETTTT
T ss_pred             CcCeEEEc---CcHHHHHHHHHHHHHHc---------CCCcEEEEeCCC
Confidence            89999985   34567788999999999         679999875433

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=99.11  E-value=1.7e-09  Score=103.27  Aligned_cols=84  Identities=12%  Similarity=0.174  Sum_probs=62.5

Q ss_pred             CCCeEEEECCCccHHHHHHHhcC-CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhc---
Q 009871          335 AGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEEN---  410 (523)
Q Consensus       335 ~~~~VLElG~G~G~l~~~~a~~~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~---  410 (523)
                      ++.+|||+|||+|.++..++... ..+|+++|+++.|++.|++|+..+++.   .++.+...|..+. ...   .+.   
T Consensus        65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~---~~v~~~~~d~~~~-~~~---~~~~~~  137 (254)
T 2h00_A           65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLS---DLIKVVKVPQKTL-LMD---ALKEES  137 (254)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCT---TTEEEEECCTTCS-STT---TSTTCC
T ss_pred             CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCC---ccEEEEEcchhhh-hhh---hhhccc
Confidence            57799999999998888887763 468999999999999999999998775   4577776654321 000   112   


Q ss_pred             CCCccEEEEccccCC
Q 009871          411 NEGFEVILGTDVSYI  425 (523)
Q Consensus       411 ~~~fD~Ii~~d~~y~  425 (523)
                      +.+||+|+++...+.
T Consensus       138 ~~~fD~i~~npp~~~  152 (254)
T 2h00_A          138 EIIYDFCMCNPPFFA  152 (254)
T ss_dssp             SCCBSEEEECCCCC-
T ss_pred             CCcccEEEECCCCcc
Confidence            258999999866543

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=99.11  E-value=9e-11  Score=106.35  Aligned_cols=74  Identities=16%  Similarity=0.100  Sum_probs=61.5

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCC-CcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQISPSSIDIVTM  152 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~V~~  152 (523)
                      .++.+|||+|||+|.++..+++.  +.+|+|+|+|+.|++.|+++....+ .++++++.|+..+.   .+.+++||+|++
T Consensus        21 ~~~~~vLDiGcG~G~~~~~la~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~---~~~~~~fD~v~~   95 (185)
T 3mti_A           21 DDESIVVDATMGNGNDTAFLAGL--SKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLD---HYVREPIRAAIF   95 (185)
T ss_dssp             CTTCEEEESCCTTSHHHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGG---GTCCSCEEEEEE
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHH---hhccCCcCEEEE
Confidence            46789999999999999999988  6789999999999999999875332 67999998776531   134678999987

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=99.11  E-value=1.8e-10  Score=109.66  Aligned_cols=109  Identities=12%  Similarity=0.063  Sum_probs=83.4

Q ss_pred             CCCCeEEEECCCccHHHHHHHhcC--CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhc-
Q 009871          334 VAGKKVLELGCGCGGICSMVAAGS--ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEEN-  410 (523)
Q Consensus       334 ~~~~~VLElG~G~G~l~~~~a~~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~-  410 (523)
                      .++++|||||||+|..+..++...  ..+|+++|+++.+++.+++|+..++..   .++.+...|..+.     +..+. 
T Consensus        62 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~---~~v~~~~~d~~~~-----l~~~~~  133 (248)
T 3tfw_A           62 TQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVD---QRVTLREGPALQS-----LESLGE  133 (248)
T ss_dssp             HTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCT---TTEEEEESCHHHH-----HHTCCS
T ss_pred             cCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC---CcEEEEEcCHHHH-----HHhcCC
Confidence            367899999999998888888763  569999999999999999999998775   4677766544221     11111 


Q ss_pred             CCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec
Q 009871          411 NEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFR  462 (523)
Q Consensus       411 ~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r  462 (523)
                      .++||+|++.   ........+++.+.++|         +|||.+++....+
T Consensus       134 ~~~fD~V~~d---~~~~~~~~~l~~~~~~L---------kpGG~lv~~~~~~  173 (248)
T 3tfw_A          134 CPAFDLIFID---ADKPNNPHYLRWALRYS---------RPGTLIIGDNVVR  173 (248)
T ss_dssp             CCCCSEEEEC---SCGGGHHHHHHHHHHTC---------CTTCEEEEECCSG
T ss_pred             CCCeEEEEEC---CchHHHHHHHHHHHHhc---------CCCeEEEEeCCCc
Confidence            3489999984   24556788999999999         7799998876553

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=99.11  E-value=1.8e-10  Score=107.33  Aligned_cols=135  Identities=15%  Similarity=0.107  Sum_probs=89.1

Q ss_pred             CCCCeEEEECCCccHHHHHHHhcC-CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCC
Q 009871          334 VAGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNE  412 (523)
Q Consensus       334 ~~~~~VLElG~G~G~l~~~~a~~~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~  412 (523)
                      .++.+|||||||+|.++..++..+ ..+|+++|+|+.|++.+.+++..+.......++.+...|..+.       ++...
T Consensus        26 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l-------~~~~~   98 (218)
T 3mq2_A           26 QYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERL-------PPLSG   98 (218)
T ss_dssp             TSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTC-------CSCCC
T ss_pred             cCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhC-------CCCCC
Confidence            367899999999999998888885 4689999999999986554443322212224677776665543       12233


Q ss_pred             CccEEEEc---cccC--CCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecC-------------CCh----hHHH
Q 009871          413 GFEVILGT---DVSY--IPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ-------------VDE----PSML  470 (523)
Q Consensus       413 ~fD~Ii~~---d~~y--~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~-------------~~~----~~~~  470 (523)
                      . |.|...   ...+  +......+++.+.++|         +|||.++++.....             ...    ..+.
T Consensus        99 ~-d~v~~~~~~~~~~~~~~~~~~~~l~~~~~~L---------kpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  168 (218)
T 3mq2_A           99 V-GELHVLMPWGSLLRGVLGSSPEMLRGMAAVC---------RPGASFLVALNLHAWRPSVPEVGEHPEPTPDSADEWLA  168 (218)
T ss_dssp             E-EEEEEESCCHHHHHHHHTSSSHHHHHHHHTE---------EEEEEEEEEEEGGGBTTBCGGGTTCCCCCHHHHHHHHH
T ss_pred             C-CEEEEEccchhhhhhhhccHHHHHHHHHHHc---------CCCcEEEEEeccccccccccccccCCccchHHHHHHHH
Confidence            4 666622   1111  2233488999999999         67999998754311             111    2356


Q ss_pred             HHHHHcCCEEEEEcC
Q 009871          471 SAATQCGFRLVDKWP  485 (523)
Q Consensus       471 ~~~~~~gf~~~~~~~  485 (523)
                      ..+.++||++.++..
T Consensus       169 ~~l~~aGf~i~~~~~  183 (218)
T 3mq2_A          169 PRYAEAGWKLADCRY  183 (218)
T ss_dssp             HHHHHTTEEEEEEEE
T ss_pred             HHHHHcCCCceeeec
Confidence            678899999988744

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=99.11  E-value=4.6e-10  Score=112.80  Aligned_cols=138  Identities=20%  Similarity=0.100  Sum_probs=96.8

Q ss_pred             HHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcC--CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCC
Q 009871          322 LMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGS--ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGN  399 (523)
Q Consensus       322 ~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~  399 (523)
                      .++..+.......++.+|||+|||+|.++..++..+  ..+|+++|+|+.+++.|++|+..+++.    .+.+...|..+
T Consensus       190 ~la~~l~~~~~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~----~i~~~~~D~~~  265 (354)
T 3tma_A          190 VLAQALLRLADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLS----WIRFLRADARH  265 (354)
T ss_dssp             HHHHHHHHHTTCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCT----TCEEEECCGGG
T ss_pred             HHHHHHHHHhCCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCC----ceEEEeCChhh
Confidence            355555444445578899999999999888888864  358999999999999999999998773    46666655543


Q ss_pred             CCcchhhhhhcCCCccEEEEccccCCCCC---------hHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhHHH
Q 009871          400 RDHIEAIKEENNEGFEVILGTDVSYIPEA---------ILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSML  470 (523)
Q Consensus       400 ~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~---------~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~~  470 (523)
                      .       +.+...||+|+++.. |....         +..+++.+.++|         +|||.+++....    . .++
T Consensus       266 ~-------~~~~~~~D~Ii~npP-yg~r~~~~~~~~~~~~~~~~~~~~~L---------kpgG~l~i~t~~----~-~~~  323 (354)
T 3tma_A          266 L-------PRFFPEVDRILANPP-HGLRLGRKEGLFHLYWDFLRGALALL---------PPGGRVALLTLR----P-ALL  323 (354)
T ss_dssp             G-------GGTCCCCSEEEECCC-SCC----CHHHHHHHHHHHHHHHHTS---------CTTCEEEEEESC----H-HHH
T ss_pred             C-------ccccCCCCEEEECCC-CcCccCCcccHHHHHHHHHHHHHHhc---------CCCcEEEEEeCC----H-HHH
Confidence            2       122457899999644 44321         367888889999         679999887643    2 233


Q ss_pred             HHHHHcCCEEEEEcC
Q 009871          471 SAATQCGFRLVDKWP  485 (523)
Q Consensus       471 ~~~~~~gf~~~~~~~  485 (523)
                      +.+.+.||++.+...
T Consensus       324 ~~~~~~g~~~~~~~~  338 (354)
T 3tma_A          324 KRALPPGFALRHARV  338 (354)
T ss_dssp             HHHCCTTEEEEEEEE
T ss_pred             HHHhhcCcEEEEEEE
Confidence            332228998876543

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=99.11  E-value=2.7e-10  Score=115.36  Aligned_cols=123  Identities=16%  Similarity=0.192  Sum_probs=85.1

Q ss_pred             hcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC--CCcEEEEEeeccCCccCCCCCCCcee
Q 009871           71 FSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISDDLSRQISPSSID  148 (523)
Q Consensus        71 ~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~~~~~~~~~~fD  148 (523)
                      ++..++.+|||||||+|..+..+++.+|+.+++|+|+ +.|++.|+++....  ..+++++++|+.+     +++. .||
T Consensus       178 ~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-----~~~~-~~D  250 (374)
T 1qzz_A          178 YDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFK-----PLPV-TAD  250 (374)
T ss_dssp             SCCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-----CCSC-CEE
T ss_pred             CCCCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-----cCCC-CCC
Confidence            3445678999999999999999999999899999999 99999999876432  2479999999974     2333 499


Q ss_pred             EEEE-------------------ccccccceeeecceE--EecCCeE----------------EEeeCHHHHHHHHHhCC
Q 009871          149 IVTM-------------------ERLTGKDQKISENFY--VRGDGTR----------------AFYFSNDFLTSLFKENG  191 (523)
Q Consensus       149 ~V~~-------------------~~~~~~~~~~~~~~~--~~~~g~~----------------~~~~~~~~l~~ll~~~G  191 (523)
                      +|++                   .+.+++++.+.-...  ..++...                ...++.+++.++|+++|
T Consensus       251 ~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aG  330 (374)
T 1qzz_A          251 VVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSAG  330 (374)
T ss_dssp             EEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHHSCCCCCHHHHHHHHHTTT
T ss_pred             EEEEeccccCCCHHHHHHHHHHHHHhcCCCcEEEEEechhhcCCCCCcchhhhcchHHHHhCCCcCCCHHHHHHHHHHCC
Confidence            9999                   122233332211000  0011000                01248899999999999


Q ss_pred             CcEEEEEeE
Q 009871          192 FDVEELGLC  200 (523)
Q Consensus       192 f~~~~~~~~  200 (523)
                      |+++++...
T Consensus       331 f~~~~~~~~  339 (374)
T 1qzz_A          331 LALASERTS  339 (374)
T ss_dssp             EEEEEEEEE
T ss_pred             CceEEEEEC
Confidence            998877543

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=99.10  E-value=1.1e-10  Score=111.21  Aligned_cols=118  Identities=12%  Similarity=0.242  Sum_probs=81.3

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhcccc---------CCCcEEEEEeeccCCccCCCCCC
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDF---------TETRVSTFVCDLISDDLSRQISP  144 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~---------~~~~v~~~~~d~~~~~~~~~~~~  144 (523)
                      .++.+|||||||+|.++..+++.+|+..|+|||+|+.|++.|+++...         ...++.++++|+.+. ++..+++
T Consensus        48 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~-l~~~~~~  126 (246)
T 2vdv_E           48 TKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKF-LPNFFEK  126 (246)
T ss_dssp             SCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSC-GGGTSCT
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHH-HHHhccc
Confidence            367899999999999999999998888999999999999999886532         235799999999852 2223667


Q ss_pred             CceeEEEE---ccccccc---------eeeec-ceEEecCCeEEEeeCHH----HHHHHHHhCCC
Q 009871          145 SSIDIVTM---ERLTGKD---------QKISE-NFYVRGDGTRAFYFSND----FLTSLFKENGF  192 (523)
Q Consensus       145 ~~fD~V~~---~~~~~~~---------~~~~~-~~~~~~~g~~~~~~~~~----~l~~ll~~~Gf  192 (523)
                      +++|.|+.   ..+.+..         ..+.. ...++++|.+.+....+    .+.+.+...|+
T Consensus       127 ~~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~~  191 (246)
T 2vdv_E          127 GQLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTITDVKDLHEWMVKHLEEHPL  191 (246)
T ss_dssp             TCEEEEEEESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHHHSTT
T ss_pred             cccCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEeccHHHHHHHHHHHHhCcC
Confidence            89999987   1110000         00000 12578888877754433    34445556653

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=99.10  E-value=7.9e-11  Score=104.97  Aligned_cols=74  Identities=15%  Similarity=0.199  Sum_probs=60.3

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM  152 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~  152 (523)
                      ++..+|||+|||+|.++..++...|+++|+|+|+|+.|++.+++++...+...++..+|....     .++++||+|++
T Consensus        48 ~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~~d~~~~-----~~~~~~DvVLa  121 (200)
T 3fzg_A           48 KHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRFLNKESD-----VYKGTYDVVFL  121 (200)
T ss_dssp             CCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEEECCHHH-----HTTSEEEEEEE
T ss_pred             CCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEEeccccc-----CCCCCcChhhH
Confidence            457899999999999999999999999999999999999999998765443323333666532     35788999999

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=99.10  E-value=1.5e-10  Score=107.67  Aligned_cols=101  Identities=16%  Similarity=0.162  Sum_probs=73.6

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEEEc
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTME  153 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~  153 (523)
                      .++.+|||||||+|..+..++     .+|+|+|+|+.              ++.+.++|+.++    ++++++||+|++.
T Consensus        66 ~~~~~vLDiG~G~G~~~~~l~-----~~v~~~D~s~~--------------~~~~~~~d~~~~----~~~~~~fD~v~~~  122 (215)
T 2zfu_A           66 PASLVVADFGCGDCRLASSIR-----NPVHCFDLASL--------------DPRVTVCDMAQV----PLEDESVDVAVFC  122 (215)
T ss_dssp             CTTSCEEEETCTTCHHHHHCC-----SCEEEEESSCS--------------STTEEESCTTSC----SCCTTCEEEEEEE
T ss_pred             CCCCeEEEECCcCCHHHHHhh-----ccEEEEeCCCC--------------CceEEEeccccC----CCCCCCEeEEEEe
Confidence            567899999999999987763     45999999998              356789999876    6778899999992


Q ss_pred             ccccc---ceeeec-ceEEecCCeEEEe------eCHHHHHHHHHhCCCcEEEE
Q 009871          154 RLTGK---DQKISE-NFYVRGDGTRAFY------FSNDFLTSLFKENGFDVEEL  197 (523)
Q Consensus       154 ~~~~~---~~~~~~-~~~~~~~g~~~~~------~~~~~l~~ll~~~Gf~~~~~  197 (523)
                      ..+..   ...+.. .-.++++|.+++.      .+.+++.++++++||.++..
T Consensus       123 ~~l~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~l~~~Gf~~~~~  176 (215)
T 2zfu_A          123 LSLMGTNIRDFLEEANRVLKPGGLLKVAEVSSRFEDVRTFLRAVTKLGFKIVSK  176 (215)
T ss_dssp             SCCCSSCHHHHHHHHHHHEEEEEEEEEEECGGGCSCHHHHHHHHHHTTEEEEEE
T ss_pred             hhccccCHHHHHHHHHHhCCCCeEEEEEEcCCCCCCHHHHHHHHHHCCCEEEEE
Confidence            21110   000000 1246778877652      37899999999999998764

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=99.10  E-value=3.1e-10  Score=111.42  Aligned_cols=137  Identities=12%  Similarity=0.062  Sum_probs=92.7

Q ss_pred             CCCeEEEECCCccHHHHHHHhcC-CCEEEEEcCChHHHHHHHHHHHh-cCCCCCCCceEEEeeecCCCCcchhhhhhcCC
Q 009871          335 AGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTA-NLKPPFLAKLITKRLEWGNRDHIEAIKEENNE  412 (523)
Q Consensus       335 ~~~~VLElG~G~G~l~~~~a~~~-~~~V~~~D~~~~~l~~~~~n~~~-n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~  412 (523)
                      ++++|||||||+|.++..+++.. ..+|+++|+|+.+++.+++++.. +.. ....++.+...|..+.     +.....+
T Consensus        95 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~-~~~~~v~~~~~D~~~~-----~~~~~~~  168 (304)
T 3bwc_A           95 KPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRS-LADPRATVRVGDGLAF-----VRQTPDN  168 (304)
T ss_dssp             SCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGG-GGCTTEEEEESCHHHH-----HHSSCTT
T ss_pred             CCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcc-cCCCcEEEEECcHHHH-----HHhccCC
Confidence            56899999999998888888773 56999999999999999998742 111 1124666665544221     1111356


Q ss_pred             CccEEEEccccCCCC--Ch--HHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCC---hhHHHHHHHHcCCEEEEEcC
Q 009871          413 GFEVILGTDVSYIPE--AI--LPLFATAKELTASSNKSLREDQQPAFILCHIFRQVD---EPSMLSAATQCGFRLVDKWP  485 (523)
Q Consensus       413 ~fD~Ii~~d~~y~~~--~~--~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~---~~~~~~~~~~~gf~~~~~~~  485 (523)
                      +||+|++.-......  .+  ..+++.+.++|         +|||.+++........   ...+.+.+++.||....+..
T Consensus       169 ~fDvIi~d~~~~~~~~~~l~~~~~l~~~~~~L---------kpgG~lv~~~~~~~~~~~~~~~~~~~l~~~GF~~v~~~~  239 (304)
T 3bwc_A          169 TYDVVIIDTTDPAGPASKLFGEAFYKDVLRIL---------KPDGICCNQGESIWLDLELIEKMSRFIRETGFASVQYAL  239 (304)
T ss_dssp             CEEEEEEECC---------CCHHHHHHHHHHE---------EEEEEEEEEECCTTTCHHHHHHHHHHHHHHTCSEEEEEE
T ss_pred             ceeEEEECCCCccccchhhhHHHHHHHHHHhc---------CCCcEEEEecCCcccchHHHHHHHHHHHhCCCCcEEEEE
Confidence            899999853332211  11  68899999999         6799998875543222   24577788899998777654


Q ss_pred             C
Q 009871          486 S  486 (523)
Q Consensus       486 ~  486 (523)
                      .
T Consensus       240 ~  240 (304)
T 3bwc_A          240 M  240 (304)
T ss_dssp             C
T ss_pred             e
Confidence            4

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=99.10  E-value=3.4e-10  Score=109.72  Aligned_cols=129  Identities=14%  Similarity=0.148  Sum_probs=94.8

Q ss_pred             CCCCCCeEEEECCCccHHHHHHHhc-C-CCEEEEEcCChHHHHHHHHHHHhc-C-CCCCCCceEEEeeecCCCCcchhhh
Q 009871          332 TIVAGKKVLELGCGCGGICSMVAAG-S-ADLVVATDGDSIALDLLAQNVTAN-L-KPPFLAKLITKRLEWGNRDHIEAIK  407 (523)
Q Consensus       332 ~~~~~~~VLElG~G~G~l~~~~a~~-~-~~~V~~~D~~~~~l~~~~~n~~~n-~-~~~~~~~v~~~~ldw~~~~~~~~~~  407 (523)
                      ...++.+|||+|||+|.++..++.. + ..+|+++|+++.+++.+++|+..+ + +.   .++.+...|..+.       
T Consensus        96 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~---~~v~~~~~d~~~~-------  165 (280)
T 1i9g_A           96 DIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPP---DNWRLVVSDLADS-------  165 (280)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCC---TTEEEECSCGGGC-------
T ss_pred             CCCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCC---CcEEEEECchHhc-------
Confidence            4557889999999999888888875 3 469999999999999999999886 4 22   3566665554332       


Q ss_pred             hhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhHHHHHHHH-cCCEEEEEcC
Q 009871          408 EENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQ-CGFRLVDKWP  485 (523)
Q Consensus       408 ~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~~~~~~~-~gf~~~~~~~  485 (523)
                      .+..++||+|++.     ......+++.+.++|         +|+|.+++..... .....+.+.+++ .+|...+++.
T Consensus       166 ~~~~~~~D~v~~~-----~~~~~~~l~~~~~~L---------~pgG~l~~~~~~~-~~~~~~~~~l~~~~~f~~~~~~~  229 (280)
T 1i9g_A          166 ELPDGSVDRAVLD-----MLAPWEVLDAVSRLL---------VAGGVLMVYVATV-TQLSRIVEALRAKQCWTEPRAWE  229 (280)
T ss_dssp             CCCTTCEEEEEEE-----SSCGGGGHHHHHHHE---------EEEEEEEEEESSH-HHHHHHHHHHHHHSSBCCCEEEC
T ss_pred             CCCCCceeEEEEC-----CcCHHHHHHHHHHhC---------CCCCEEEEEeCCH-HHHHHHHHHHHhcCCcCCcEEEE
Confidence            1234689999983     235668899999999         6799988876542 123355666666 7888777665

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=99.09  E-value=2.1e-10  Score=115.46  Aligned_cols=123  Identities=14%  Similarity=0.155  Sum_probs=89.0

Q ss_pred             hhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC--CCcEEEEEeeccCCccCCCCCCCce
Q 009871           70 YFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISDDLSRQISPSSI  147 (523)
Q Consensus        70 ~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~~~~~~~~~~f  147 (523)
                      .++..++.+|||||||+|..+..+++++|+.+|+|+|+ +.|++.|+++....  ..+++++.+|+.+.    ++++  +
T Consensus       185 ~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~~~~--~  257 (359)
T 1x19_A          185 EAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKE----SYPE--A  257 (359)
T ss_dssp             HCCCTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTS----CCCC--C
T ss_pred             hcCCCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccC----CCCC--C
Confidence            33446778999999999999999999999999999999 99999999876432  34699999999865    4444  3


Q ss_pred             eEEEE-------------------ccccccceeeecceEEec------------------CCe-EEEeeCHHHHHHHHHh
Q 009871          148 DIVTM-------------------ERLTGKDQKISENFYVRG------------------DGT-RAFYFSNDFLTSLFKE  189 (523)
Q Consensus       148 D~V~~-------------------~~~~~~~~~~~~~~~~~~------------------~g~-~~~~~~~~~l~~ll~~  189 (523)
                      |+|++                   .+.+++++.+.-.....+                  +|. ...+++.+++.+++++
T Consensus       258 D~v~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~t~~e~~~ll~~  337 (359)
T 1x19_A          258 DAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYILGAGMPFSVLGFKEQARYKEILES  337 (359)
T ss_dssp             SEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEECCCCTTSCCHHHHHHHGGGGGSSCCCCCCCCGGGHHHHHHH
T ss_pred             CEEEEechhccCCHHHHHHHHHHHHHhcCCCCEEEEEecccCCCCCchHHHHHHHHHhcCCCCcccCCCCHHHHHHHHHH
Confidence            99999                   233344544421111111                  111 1122688999999999


Q ss_pred             CCCcEEEEEe
Q 009871          190 NGFDVEELGL  199 (523)
Q Consensus       190 ~Gf~~~~~~~  199 (523)
                      +||+++++..
T Consensus       338 aGf~~v~~~~  347 (359)
T 1x19_A          338 LGYKDVTMVR  347 (359)
T ss_dssp             HTCEEEEEEE
T ss_pred             CCCceEEEEe
Confidence            9999877654

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=99.09  E-value=2.1e-10  Score=106.19  Aligned_cols=81  Identities=16%  Similarity=0.040  Sum_probs=66.9

Q ss_pred             HHhhhhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC-CCcEEEEEeeccCCccCCCCCC
Q 009871           66 EWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT-ETRVSTFVCDLISDDLSRQISP  144 (523)
Q Consensus        66 ~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~-~~~v~~~~~d~~~~~~~~~~~~  144 (523)
                      .+.+.+...++.+|||||||+|..+..+++.  +.+|+|+|+|+.+++.|+++.... ..++++.++|+.+.    ..++
T Consensus        68 ~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~----~~~~  141 (210)
T 3lbf_A           68 RMTELLELTPQSRVLEIGTGSGYQTAILAHL--VQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQG----WQAR  141 (210)
T ss_dssp             HHHHHTTCCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGC----CGGG
T ss_pred             HHHHhcCCCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccC----CccC
Confidence            3344455577899999999999999999998  678999999999999999976432 35799999999875    3456


Q ss_pred             CceeEEEE
Q 009871          145 SSIDIVTM  152 (523)
Q Consensus       145 ~~fD~V~~  152 (523)
                      ++||+|++
T Consensus       142 ~~~D~i~~  149 (210)
T 3lbf_A          142 APFDAIIV  149 (210)
T ss_dssp             CCEEEEEE
T ss_pred             CCccEEEE
Confidence            79999998

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=99.09  E-value=2.2e-10  Score=110.17  Aligned_cols=106  Identities=17%  Similarity=0.220  Sum_probs=70.0

Q ss_pred             HHHHHHHHh---cccccccchhhhHHHHhhhhcCCCCCeEEEECCCccc----cHHHHHhhCC----CCEEEEEeCCHHH
Q 009871           43 KYWDLFYKR---HQDRFFKDRHYLDKEWGRYFSGAGRKDVLEVGCGAGN----TIFPLIAAYP----DVFVYACDFSPRA  111 (523)
Q Consensus        43 ~~Wd~~y~~---~~~~f~~~~~~l~~~~~~~~~~~~~~~iLDiGcG~G~----~~~~l~~~~~----~~~v~gvD~S~~~  111 (523)
                      .-|..+.+.   +...|+.+...+..--..++|..++.+|||+|||||.    ++..|++..+    +++|+|+|+|+.|
T Consensus        70 ~e~~~l~~~lt~~~t~FfRd~~~f~~l~~~llp~~~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~  149 (274)
T 1af7_A           70 AEWQAFINALTTNLTAFFREAHHFPILAEHARRRHGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEV  149 (274)
T ss_dssp             THHHHHHHHHCCCCCCTTTTTTHHHHHHHHHHHSCSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHH
T ss_pred             HHHHHHHHHHhhcCccccCChHHHHHHHHHccCCCCCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHH
Confidence            456666554   3455664433221111123332245799999999998    5556666533    4689999999999


Q ss_pred             HHHHHhccc--------------------c---CC---------CcEEEEEeeccCCccCCCCC-CCceeEEEE
Q 009871          112 VNLVMTHKD--------------------F---TE---------TRVSTFVCDLISDDLSRQIS-PSSIDIVTM  152 (523)
Q Consensus       112 l~~a~~~~~--------------------~---~~---------~~v~~~~~d~~~~~~~~~~~-~~~fD~V~~  152 (523)
                      |+.|++..-                    .   .+         .++.|.++|+.+.    +++ .++||+|+|
T Consensus       150 L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~~~~v~~~lr~~V~F~~~dl~~~----~~~~~~~fDlI~c  219 (274)
T 1af7_A          150 LEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEGLVRVRQELANYVEFSSVNLLEK----QYNVPGPFDAIFC  219 (274)
T ss_dssp             HHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCSEEEECHHHHTTEEEEECCTTCS----SCCCCCCEEEEEE
T ss_pred             HHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCCceeechhhcccCeEEecccCCC----CCCcCCCeeEEEE
Confidence            999998641                    0   00         3689999999865    343 578999999

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=99.09  E-value=8.6e-10  Score=111.51  Aligned_cols=131  Identities=8%  Similarity=0.014  Sum_probs=94.1

Q ss_pred             CCCCeEEEECCCccHHHHHHHhcCC-CEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCC
Q 009871          334 VAGKKVLELGCGCGGICSMVAAGSA-DLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNE  412 (523)
Q Consensus       334 ~~~~~VLElG~G~G~l~~~~a~~~~-~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~  412 (523)
                      .++++|||+| |+|.++..++..++ .+|+++|+++.|++.+++|+..+++.    ++.+...|..+.  +.   ....+
T Consensus       171 ~~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~----~v~~~~~D~~~~--l~---~~~~~  240 (373)
T 2qm3_A          171 LENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYE----DIEIFTFDLRKP--LP---DYALH  240 (373)
T ss_dssp             STTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCC----CEEEECCCTTSC--CC---TTTSS
T ss_pred             CCCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC----CEEEEEChhhhh--ch---hhccC
Confidence            3688999999 99999888888776 79999999999999999999998763    577776666542  11   00135


Q ss_pred             CccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcE-EEEEEeecCCCh---hHHHHHHH-HcCCEEEEEc
Q 009871          413 GFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPA-FILCHIFRQVDE---PSMLSAAT-QCGFRLVDKW  484 (523)
Q Consensus       413 ~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~-~~l~~~~r~~~~---~~~~~~~~-~~gf~~~~~~  484 (523)
                      +||+|+++.+ |.......+++.+.++|         +|||+ ++++...+..+.   ..+.+.+. +.||.+..++
T Consensus       241 ~fD~Vi~~~p-~~~~~~~~~l~~~~~~L---------kpgG~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~  307 (373)
T 2qm3_A          241 KFDTFITDPP-ETLEAIRAFVGRGIATL---------KGPRCAGYFGITRRESSLDKWREIQKLLLNEFNVVITDII  307 (373)
T ss_dssp             CBSEEEECCC-SSHHHHHHHHHHHHHTB---------CSTTCEEEEEECTTTCCHHHHHHHHHHHHHTSCCEEEEEE
T ss_pred             CccEEEECCC-CchHHHHHHHHHHHHHc---------ccCCeEEEEEEecCcCCHHHHHHHHHHHHHhcCcchhhhh
Confidence            8999999654 43333678888888999         67884 355443322333   34556666 7899886654

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=99.09  E-value=2.9e-10  Score=103.33  Aligned_cols=121  Identities=16%  Similarity=0.216  Sum_probs=82.9

Q ss_pred             HHhhhhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCC-Cc--EEEEEeeccCCccCCCC
Q 009871           66 EWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE-TR--VSTFVCDLISDDLSRQI  142 (523)
Q Consensus        66 ~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~-~~--v~~~~~d~~~~~~~~~~  142 (523)
                      .+.+.+...++.+|||+|||+|..+..+++.  +.+|+|+|+|+.|++.|+++....+ .+  ++++++|+.+.     +
T Consensus        43 ~l~~~~~~~~~~~vLdiG~G~G~~~~~~~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-----~  115 (194)
T 1dus_A           43 ILVENVVVDKDDDILDLGCGYGVIGIALADE--VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYEN-----V  115 (194)
T ss_dssp             HHHHHCCCCTTCEEEEETCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTT-----C
T ss_pred             HHHHHcccCCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcc-----c
Confidence            3334455567889999999999999999988  6789999999999999999764332 33  99999998753     3


Q ss_pred             CCCceeEEEEcccccc----cee-eec-ceEEecCCeEEEee----CHHHHHHHHHhCCCcE
Q 009871          143 SPSSIDIVTMERLTGK----DQK-ISE-NFYVRGDGTRAFYF----SNDFLTSLFKENGFDV  194 (523)
Q Consensus       143 ~~~~fD~V~~~~~~~~----~~~-~~~-~~~~~~~g~~~~~~----~~~~l~~ll~~~Gf~~  194 (523)
                      ++++||+|++......    ... +.. .-.++++|.+++..    ...++.+.+++. |..
T Consensus       116 ~~~~~D~v~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~-~~~  176 (194)
T 1dus_A          116 KDRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQTKQGAKSLAKYMKDV-FGN  176 (194)
T ss_dssp             TTSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEESTHHHHHHHHHHHHH-HSC
T ss_pred             ccCCceEEEECCCcccchhHHHHHHHHHHHHcCCCCEEEEEECCCCChHHHHHHHHHH-hcc
Confidence            4678999999211111    000 000 11477788776532    234467777766 543

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=99.09  E-value=4.6e-10  Score=105.27  Aligned_cols=117  Identities=17%  Similarity=0.211  Sum_probs=83.0

Q ss_pred             CCCCCeEEEECCCccccHHHHHhh-CCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEE
Q 009871           73 GAGRKDVLEVGCGAGNTIFPLIAA-YPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVT  151 (523)
Q Consensus        73 ~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~  151 (523)
                      ..++.+|||+|||+|.++..+++. .++.+|+|+|+|+.|++.++++.... .+++++++|+.+.....++ +++||+|+
T Consensus        71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~-~~v~~~~~d~~~~~~~~~~-~~~~D~v~  148 (227)
T 1g8a_A           71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER-RNIVPILGDATKPEEYRAL-VPKVDVIF  148 (227)
T ss_dssp             CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC-TTEEEEECCTTCGGGGTTT-CCCEEEEE
T ss_pred             CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc-CCCEEEEccCCCcchhhcc-cCCceEEE
Confidence            457789999999999999999988 46678999999999999998877544 6899999999863211122 35899999


Q ss_pred             Eccc--------cccceeeecceEEecCCeEEEee--------------CHHHHHHHHHhCCCcEEEEE
Q 009871          152 MERL--------TGKDQKISENFYVRGDGTRAFYF--------------SNDFLTSLFKENGFDVEELG  198 (523)
Q Consensus       152 ~~~~--------~~~~~~~~~~~~~~~~g~~~~~~--------------~~~~l~~ll~~~Gf~~~~~~  198 (523)
                      +.-.        +....+     .++++|.+++.+              ..+++..+ .++ |++++..
T Consensus       149 ~~~~~~~~~~~~l~~~~~-----~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~l~~l-~~~-f~~~~~~  210 (227)
T 1g8a_A          149 EDVAQPTQAKILIDNAEV-----YLKRGGYGMIAVKSRSIDVTKEPEQVFREVEREL-SEY-FEVIERL  210 (227)
T ss_dssp             ECCCSTTHHHHHHHHHHH-----HEEEEEEEEEEEEGGGTCTTSCHHHHHHHHHHHH-HTT-SEEEEEE
T ss_pred             ECCCCHhHHHHHHHHHHH-----hcCCCCEEEEEEecCCCCCCCChhhhhHHHHHHH-Hhh-ceeeeEe
Confidence            8111        111111     567777765532              13566666 666 8876553

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=99.09  E-value=8.3e-10  Score=100.63  Aligned_cols=144  Identities=13%  Similarity=0.134  Sum_probs=93.3

Q ss_pred             hHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecC
Q 009871          319 SAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWG  398 (523)
Q Consensus       319 ~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~  398 (523)
                      ++..|.+.+.......++.+|||||||+|+++..++.. ..+|+++|+++..           .    ...+.+...|..
T Consensus         9 a~~KL~ei~~~~~~~~~g~~VLDlG~G~G~~s~~la~~-~~~V~gvD~~~~~-----------~----~~~v~~~~~D~~   72 (191)
T 3dou_A            9 AAFKLEFLLDRYRVVRKGDAVIEIGSSPGGWTQVLNSL-ARKIISIDLQEME-----------E----IAGVRFIRCDIF   72 (191)
T ss_dssp             HHHHHHHHHHHHCCSCTTCEEEEESCTTCHHHHHHTTT-CSEEEEEESSCCC-----------C----CTTCEEEECCTT
T ss_pred             HHHHHHHHHHHcCCCCCCCEEEEEeecCCHHHHHHHHc-CCcEEEEeccccc-----------c----CCCeEEEEcccc
Confidence            56667777766555567899999999999999888888 6689999998741           1    135677777776


Q ss_pred             CCCcchhhhhhcC----CCccEEEEccccCCCC-----------ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecC
Q 009871          399 NRDHIEAIKEENN----EGFEVILGTDVSYIPE-----------AILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ  463 (523)
Q Consensus       399 ~~~~~~~~~~~~~----~~fD~Ii~~d~~y~~~-----------~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~  463 (523)
                      +......+.....    ++||+|++.-......           ....+++.+.++|         +|||.+++.... .
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L---------kpGG~lv~k~~~-~  142 (191)
T 3dou_A           73 KETIFDDIDRALREEGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYL---------RNGGNVLLKQFQ-G  142 (191)
T ss_dssp             SSSHHHHHHHHHHHHTCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHE---------EEEEEEEEEEEC-S
T ss_pred             CHHHHHHHHHHhhcccCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHc---------cCCCEEEEEEcC-C
Confidence            6433222222111    4899999853221111           1346677888899         679999876543 3


Q ss_pred             CChhHHHHHHHHcCCEEEEEcCCCCC
Q 009871          464 VDEPSMLSAATQCGFRLVDKWPSKNS  489 (523)
Q Consensus       464 ~~~~~~~~~~~~~gf~~~~~~~~~~~  489 (523)
                      .....+...++. .|.-..+..+.++
T Consensus       143 ~~~~~~~~~l~~-~F~~v~~~kP~as  167 (191)
T 3dou_A          143 DMTNDFIAIWRK-NFSSYKISKPPAS  167 (191)
T ss_dssp             THHHHHHHHHGG-GEEEEEEECC---
T ss_pred             CCHHHHHHHHHH-hcCEEEEECCCCc
Confidence            334556666644 4877777665333

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=99.08  E-value=3.6e-10  Score=104.99  Aligned_cols=105  Identities=16%  Similarity=0.077  Sum_probs=80.1

Q ss_pred             CCCCCCeEEEECCCccHHHHHHHhcCC--CEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhh
Q 009871          332 TIVAGKKVLELGCGCGGICSMVAAGSA--DLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEE  409 (523)
Q Consensus       332 ~~~~~~~VLElG~G~G~l~~~~a~~~~--~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~  409 (523)
                      ...++.+|||+|||+|.++..++..+.  .+|+++|+++.+++.+++++..++..    ++.+...|....  ..     
T Consensus        74 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~----~v~~~~~d~~~~--~~-----  142 (215)
T 2yxe_A           74 DLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYD----NVIVIVGDGTLG--YE-----  142 (215)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCT----TEEEEESCGGGC--CG-----
T ss_pred             CCCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC----CeEEEECCcccC--CC-----
Confidence            455788999999999988888888753  68999999999999999999887653    366655554221  10     


Q ss_pred             cCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec
Q 009871          410 NNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFR  462 (523)
Q Consensus       410 ~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r  462 (523)
                      ..++||+|+++.++++..      +.+.++|         +|||.+++.....
T Consensus       143 ~~~~fD~v~~~~~~~~~~------~~~~~~L---------~pgG~lv~~~~~~  180 (215)
T 2yxe_A          143 PLAPYDRIYTTAAGPKIP------EPLIRQL---------KDGGKLLMPVGRY  180 (215)
T ss_dssp             GGCCEEEEEESSBBSSCC------HHHHHTE---------EEEEEEEEEESSS
T ss_pred             CCCCeeEEEECCchHHHH------HHHHHHc---------CCCcEEEEEECCC
Confidence            135899999998877543      5778888         6799998887553

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.08  E-value=6.9e-11  Score=126.20  Aligned_cols=75  Identities=15%  Similarity=0.205  Sum_probs=64.0

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCC-CcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQISPSSIDIVTM  152 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~V~~  152 (523)
                      ..+.+|||||||.|.++..|++.  ++.|+|||+|+.+|+.|+.++...+ .+++|.+++++++  ...+.+++||+|+|
T Consensus        65 ~~~~~vLDvGCG~G~~~~~la~~--ga~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~--~~~~~~~~fD~v~~  140 (569)
T 4azs_A           65 GRPLNVLDLGCAQGFFSLSLASK--GATIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEV--IAALEEGEFDLAIG  140 (569)
T ss_dssp             TSCCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHH--HHHCCTTSCSEEEE
T ss_pred             CCCCeEEEECCCCcHHHHHHHhC--CCEEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHH--hhhccCCCccEEEE
Confidence            45689999999999999999999  6789999999999999999876543 6899999999854  22345789999999

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=99.08  E-value=6.1e-10  Score=119.26  Aligned_cols=111  Identities=11%  Similarity=0.070  Sum_probs=84.1

Q ss_pred             CCCCeEEEECCCccHHHHHHHhcCC--CEEEEEcCChHHHHHHHHHHHhcCC--CCCCCceEEEeeecCCCCcchhhhhh
Q 009871          334 VAGKKVLELGCGCGGICSMVAAGSA--DLVVATDGDSIALDLLAQNVTANLK--PPFLAKLITKRLEWGNRDHIEAIKEE  409 (523)
Q Consensus       334 ~~~~~VLElG~G~G~l~~~~a~~~~--~~V~~~D~~~~~l~~~~~n~~~n~~--~~~~~~v~~~~ldw~~~~~~~~~~~~  409 (523)
                      .++.+|||||||+|.++..++..++  .+|+++|+++.|++.|++++.....  .....++.+...|..+.       +.
T Consensus       720 ~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dL-------p~  792 (950)
T 3htx_A          720 SSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEF-------DS  792 (950)
T ss_dssp             SCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSC-------CT
T ss_pred             cCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhC-------Cc
Confidence            3778999999999988888888873  6899999999999999987764311  11224677776665543       22


Q ss_pred             cCCCccEEEEccccCCCCChH--HHHHHHHHHhhccCCCCCCCCCcEEEEEEee
Q 009871          410 NNEGFEVILGTDVSYIPEAIL--PLFATAKELTASSNKSLREDQQPAFILCHIF  461 (523)
Q Consensus       410 ~~~~fD~Ii~~d~~y~~~~~~--~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~  461 (523)
                      ..++||+|++.+++.+.....  .+++.+.++|         +|| .++++...
T Consensus       793 ~d~sFDlVV~~eVLeHL~dp~l~~~L~eI~RvL---------KPG-~LIISTPN  836 (950)
T 3htx_A          793 RLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLF---------HPK-LLIVSTPN  836 (950)
T ss_dssp             TSCSCCEEEEESCGGGSCHHHHHHHHHHHHHTT---------CCS-EEEEEECB
T ss_pred             ccCCeeEEEEeCchhhCChHHHHHHHHHHHHHc---------CCC-EEEEEecC
Confidence            357899999999998866533  5889999999         678 77766543

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=99.08  E-value=2.1e-09  Score=107.87  Aligned_cols=140  Identities=8%  Similarity=-0.038  Sum_probs=105.8

Q ss_pred             HHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCC-EEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcc
Q 009871          325 AVLARNPTIVAGKKVLELGCGCGGICSMVAAGSAD-LVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHI  403 (523)
Q Consensus       325 ~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~-~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~  403 (523)
                      ..+....+.....+|||||||+|.++..++++.+. +++..|. |.+++.+++++...+    ..+|.+...|..+.   
T Consensus       169 ~~~~~~~~~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~~----~~rv~~~~gD~~~~---  240 (353)
T 4a6d_A          169 RSVLTAFDLSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQE----EEQIDFQEGDFFKD---  240 (353)
T ss_dssp             HHHHHSSCGGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC------CCSEEEEESCTTTS---
T ss_pred             HHHHHhcCcccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhcc----cCceeeecCccccC---
Confidence            33444445556789999999999998888888654 8999998 899999998875433    36788888776543   


Q ss_pred             hhhhhhcCCCccEEEEccccCCCCC--hHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecC------------------
Q 009871          404 EAIKEENNEGFEVILGTDVSYIPEA--ILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ------------------  463 (523)
Q Consensus       404 ~~~~~~~~~~fD~Ii~~d~~y~~~~--~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~------------------  463 (523)
                            +...+|+|+...++++..+  ...+++.+.+.|         +|||.++++...-.                  
T Consensus       241 ------~~~~~D~~~~~~vlh~~~d~~~~~iL~~~~~al---------~pgg~lli~e~~~~~~~~~~~~~~~~dl~ml~  305 (353)
T 4a6d_A          241 ------PLPEADLYILARVLHDWADGKCSHLLERIYHTC---------KPGGGILVIESLLDEDRRGPLLTQLYSLNMLV  305 (353)
T ss_dssp             ------CCCCCSEEEEESSGGGSCHHHHHHHHHHHHHHC---------CTTCEEEEEECCCCTTSCCCHHHHHHHHHHHH
T ss_pred             ------CCCCceEEEeeeecccCCHHHHHHHHHHHHhhC---------CCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHH
Confidence                  1346899999999988654  467899999999         77999998765311                  


Q ss_pred             ------CChhHHHHHHHHcCCEEEEEcCCC
Q 009871          464 ------VDEPSMLSAATQCGFRLVDKWPSK  487 (523)
Q Consensus       464 ------~~~~~~~~~~~~~gf~~~~~~~~~  487 (523)
                            .+..++.+.++++||+..++++..
T Consensus       306 ~~~g~ert~~e~~~ll~~AGf~~v~v~~~~  335 (353)
T 4a6d_A          306 QTEGQERTPTHYHMLLSSAGFRDFQFKKTG  335 (353)
T ss_dssp             SSSCCCCCHHHHHHHHHHHTCEEEEEECCS
T ss_pred             hCCCcCCCHHHHHHHHHHCCCceEEEEEcC
Confidence                  133567788899999999998853

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=99.08  E-value=2.6e-10  Score=110.57  Aligned_cols=119  Identities=14%  Similarity=0.158  Sum_probs=87.2

Q ss_pred             hhcCCCCCeEEEECCCccccHHHHHhh-CCCCEEEEEeCCHHHHHHHHhccccC----CCcEEEEEeeccCCccCCCCCC
Q 009871           70 YFSGAGRKDVLEVGCGAGNTIFPLIAA-YPDVFVYACDFSPRAVNLVMTHKDFT----ETRVSTFVCDLISDDLSRQISP  144 (523)
Q Consensus        70 ~~~~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~v~gvD~S~~~l~~a~~~~~~~----~~~v~~~~~d~~~~~~~~~~~~  144 (523)
                      .+...++.+|||+|||+|.++..+++. .|+.+|+|+|+|+.+++.|+++....    ..++++.++|+.+.    ++++
T Consensus        94 ~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~----~~~~  169 (280)
T 1i9g_A           94 EGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADS----ELPD  169 (280)
T ss_dssp             HTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGC----CCCT
T ss_pred             HcCCCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhc----CCCC
Confidence            344467889999999999999999986 66789999999999999999976433    36799999999876    5567


Q ss_pred             CceeEEEEc-----cccccceeeecceEEecCCeEEEee-CHH---HHHHHHHh-CCCcEEEE
Q 009871          145 SSIDIVTME-----RLTGKDQKISENFYVRGDGTRAFYF-SND---FLTSLFKE-NGFDVEEL  197 (523)
Q Consensus       145 ~~fD~V~~~-----~~~~~~~~~~~~~~~~~~g~~~~~~-~~~---~l~~ll~~-~Gf~~~~~  197 (523)
                      ++||+|++.     .++....+     .++++|.++++. +.+   ++...+.+ .||...+.
T Consensus       170 ~~~D~v~~~~~~~~~~l~~~~~-----~L~pgG~l~~~~~~~~~~~~~~~~l~~~~~f~~~~~  227 (280)
T 1i9g_A          170 GSVDRAVLDMLAPWEVLDAVSR-----LLVAGGVLMVYVATVTQLSRIVEALRAKQCWTEPRA  227 (280)
T ss_dssp             TCEEEEEEESSCGGGGHHHHHH-----HEEEEEEEEEEESSHHHHHHHHHHHHHHSSBCCCEE
T ss_pred             CceeEEEECCcCHHHHHHHHHH-----hCCCCCEEEEEeCCHHHHHHHHHHHHhcCCcCCcEE
Confidence            889999981     22222222     577888876644 333   34445555 78875443

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=99.08  E-value=9.2e-11  Score=110.58  Aligned_cols=76  Identities=12%  Similarity=0.248  Sum_probs=64.1

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCC--CcEEEEEeeccCCccCCC-CCCCceeEE
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQ-ISPSSIDIV  150 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~-~~~~~fD~V  150 (523)
                      .++.+|||||||+|..+..+++..++.+|+|+|+|+.|++.|+++....+  .+++++++|+.+. +  + ..+++||+|
T Consensus        70 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~--~~~~~~~fD~V  146 (232)
T 3ntv_A           70 NNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQ-F--ENVNDKVYDMI  146 (232)
T ss_dssp             HTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGC-H--HHHTTSCEEEE
T ss_pred             cCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHH-H--HhhccCCccEE
Confidence            46789999999999999999997778999999999999999999765433  4799999999754 1  1 226789999


Q ss_pred             EE
Q 009871          151 TM  152 (523)
Q Consensus       151 ~~  152 (523)
                      ++
T Consensus       147 ~~  148 (232)
T 3ntv_A          147 FI  148 (232)
T ss_dssp             EE
T ss_pred             EE
Confidence            98

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=99.08  E-value=4.5e-10  Score=105.54  Aligned_cols=102  Identities=16%  Similarity=0.102  Sum_probs=78.5

Q ss_pred             CCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcC
Q 009871          332 TIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENN  411 (523)
Q Consensus       332 ~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~  411 (523)
                      ...++.+|||+|||+|.++..++..+ .+|+++|+++.+++.+++++..++      ++.+...|..+.  .     ...
T Consensus        67 ~~~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~------~v~~~~~d~~~~--~-----~~~  132 (231)
T 1vbf_A           67 DLHKGQKVLEIGTGIGYYTALIAEIV-DKVVSVEINEKMYNYASKLLSYYN------NIKLILGDGTLG--Y-----EEE  132 (231)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHHHHHHHHHTTCS------SEEEEESCGGGC--C-----GGG
T ss_pred             CCCCCCEEEEEcCCCCHHHHHHHHHc-CEEEEEeCCHHHHHHHHHHHhhcC------CeEEEECCcccc--c-----ccC
Confidence            44578899999999998888888876 789999999999999999987653      456665555431  1     024


Q ss_pred             CCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec
Q 009871          412 EGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFR  462 (523)
Q Consensus       412 ~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r  462 (523)
                      ++||+|++..++++..      ..+.++|         +|||.+++.....
T Consensus       133 ~~fD~v~~~~~~~~~~------~~~~~~L---------~pgG~l~~~~~~~  168 (231)
T 1vbf_A          133 KPYDRVVVWATAPTLL------CKPYEQL---------KEGGIMILPIGVG  168 (231)
T ss_dssp             CCEEEEEESSBBSSCC------HHHHHTE---------EEEEEEEEEECSS
T ss_pred             CCccEEEECCcHHHHH------HHHHHHc---------CCCcEEEEEEcCC
Confidence            6899999998887543      4677888         6799998887653

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=99.08  E-value=1e-10  Score=114.84  Aligned_cols=123  Identities=15%  Similarity=0.178  Sum_probs=87.5

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccc-----cCCCcEEEEEeeccCCccCCCCCCCcee
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKD-----FTETRVSTFVCDLISDDLSRQISPSSID  148 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~-----~~~~~v~~~~~d~~~~~~~~~~~~~~fD  148 (523)
                      +++.+|||||||+|..+..+++..+..+|+|+|+|+.|++.|+++..     ....+++++++|+.+...  ..++++||
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~--~~~~~~fD  171 (304)
T 3bwc_A           94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVR--QTPDNTYD  171 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHH--SSCTTCEE
T ss_pred             CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHH--hccCCcee
Confidence            56789999999999999999988667799999999999999998752     134689999999975411  11467899


Q ss_pred             EEEEccccc--cceee------ec-ceEEecCCeEEEee--------CHHHHHHHHHhCCCcEEEEE
Q 009871          149 IVTMERLTG--KDQKI------SE-NFYVRGDGTRAFYF--------SNDFLTSLFKENGFDVEELG  198 (523)
Q Consensus       149 ~V~~~~~~~--~~~~~------~~-~~~~~~~g~~~~~~--------~~~~l~~ll~~~Gf~~~~~~  198 (523)
                      +|++.....  +...+      .. ...++++|.++...        ..+++.+.++++||..+...
T Consensus       172 vIi~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~GF~~v~~~  238 (304)
T 3bwc_A          172 VVIIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGESIWLDLELIEKMSRFIRETGFASVQYA  238 (304)
T ss_dssp             EEEEECC---------CCHHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHHHHHTCSEEEEE
T ss_pred             EEEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHHhCCCCcEEEE
Confidence            999911100  00000      00 12577888877631        35678889999999976553

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=99.08  E-value=2.6e-10  Score=114.45  Aligned_cols=118  Identities=14%  Similarity=0.228  Sum_probs=84.2

Q ss_pred             CCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC--CCcEEEEEeeccCCccCCCCCCCceeEEEE-
Q 009871           76 RKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISDDLSRQISPSSIDIVTM-  152 (523)
Q Consensus        76 ~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~-  152 (523)
                      +.+|||||||+|.++..+++.+|+.+++++|+ +.+++.|+++....  ..+++++.+|+.+..   ++.++.||+|++ 
T Consensus       180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~~~~~~D~v~~~  255 (352)
T 3mcz_A          180 ARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDAR---NFEGGAADVVMLN  255 (352)
T ss_dssp             CCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGG---GGTTCCEEEEEEE
T ss_pred             CCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCc---ccCCCCccEEEEe
Confidence            78999999999999999999999999999999 88999999875432  247999999998652   123567999999 


Q ss_pred             ------------------ccccccceeeecceEEecC-Ce-E----------------EEeeCHHHHHHHHHhCCCcEEE
Q 009871          153 ------------------ERLTGKDQKISENFYVRGD-GT-R----------------AFYFSNDFLTSLFKENGFDVEE  196 (523)
Q Consensus       153 ------------------~~~~~~~~~~~~~~~~~~~-g~-~----------------~~~~~~~~l~~ll~~~Gf~~~~  196 (523)
                                        .+.+++++++.-.....++ +. .                ...++.+++.++|+++||.+++
T Consensus       256 ~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~  335 (352)
T 3mcz_A          256 DCLHYFDAREAREVIGHAAGLVKPGGALLILTMTMNDDRVTPALSADFSLHMMVNTNHGELHPTPWIAGVVRDAGLAVGE  335 (352)
T ss_dssp             SCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEECCCTTSSSSHHHHHHHHHHHHHSTTCCCCCHHHHHHHHHHTTCEEEE
T ss_pred             cccccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCCchHHHhhHHHHhhCCCCCcCCHHHHHHHHHHCCCceee
Confidence                              2222333333211111111 00 0                0124789999999999999877


Q ss_pred             E
Q 009871          197 L  197 (523)
Q Consensus       197 ~  197 (523)
                      .
T Consensus       336 ~  336 (352)
T 3mcz_A          336 R  336 (352)
T ss_dssp             E
T ss_pred             e
Confidence            3

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.08  E-value=2.6e-10  Score=109.41  Aligned_cols=110  Identities=15%  Similarity=0.105  Sum_probs=81.2

Q ss_pred             HHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCc
Q 009871          323 MAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDH  402 (523)
Q Consensus       323 la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~  402 (523)
                      +.+++.....  ++.+|||||||+|.++..++..+ .+|+++|+|+.+++.++++...        .  +...|..+.  
T Consensus        44 ~~~~l~~~~~--~~~~vLDiGcG~G~~~~~l~~~~-~~v~gvD~s~~~l~~a~~~~~~--------~--~~~~d~~~~--  108 (260)
T 2avn_A           44 IGSFLEEYLK--NPCRVLDLGGGTGKWSLFLQERG-FEVVLVDPSKEMLEVAREKGVK--------N--VVEAKAEDL--  108 (260)
T ss_dssp             HHHHHHHHCC--SCCEEEEETCTTCHHHHHHHTTT-CEEEEEESCHHHHHHHHHHTCS--------C--EEECCTTSC--
T ss_pred             HHHHHHHhcC--CCCeEEEeCCCcCHHHHHHHHcC-CeEEEEeCCHHHHHHHHhhcCC--------C--EEECcHHHC--
Confidence            3445544332  67899999999998888888775 5899999999999999887431        1  333333321  


Q ss_pred             chhhhhhcCCCccEEEEccccC-CCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee
Q 009871          403 IEAIKEENNEGFEVILGTDVSY-IPEAILPLFATAKELTASSNKSLREDQQPAFILCHIF  461 (523)
Q Consensus       403 ~~~~~~~~~~~fD~Ii~~d~~y-~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~  461 (523)
                           ++++++||+|++..+++ .......+++.+.++|         +|||.+++....
T Consensus       109 -----~~~~~~fD~v~~~~~~~~~~~~~~~~l~~~~~~L---------kpgG~l~~~~~~  154 (260)
T 2avn_A          109 -----PFPSGAFEAVLALGDVLSYVENKDKAFSEIRRVL---------VPDGLLIATVDN  154 (260)
T ss_dssp             -----CSCTTCEEEEEECSSHHHHCSCHHHHHHHHHHHE---------EEEEEEEEEEEB
T ss_pred             -----CCCCCCEEEEEEcchhhhccccHHHHHHHHHHHc---------CCCeEEEEEeCC
Confidence                 23456899999987554 3466999999999999         679999987655

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.07  E-value=2e-10  Score=107.48  Aligned_cols=108  Identities=11%  Similarity=0.052  Sum_probs=82.4

Q ss_pred             CCCCeEEEECCCccHHHHHHHhcC--CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcC
Q 009871          334 VAGKKVLELGCGCGGICSMVAAGS--ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENN  411 (523)
Q Consensus       334 ~~~~~VLElG~G~G~l~~~~a~~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~  411 (523)
                      .++.+|||||||+|..+..++...  ..+|+++|+++.+++.+++|+..++..   .++.+...|..+.     +..+..
T Consensus        63 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~---~~v~~~~~d~~~~-----~~~~~~  134 (225)
T 3tr6_A           63 MQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLS---DKIGLRLSPAKDT-----LAELIH  134 (225)
T ss_dssp             HTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCT---TTEEEEESCHHHH-----HHHHHT
T ss_pred             hCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCC---CceEEEeCCHHHH-----HHHhhh
Confidence            367799999999998888888763  569999999999999999999998775   4577765544221     111211


Q ss_pred             ----CCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee
Q 009871          412 ----EGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIF  461 (523)
Q Consensus       412 ----~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~  461 (523)
                          ++||+|+..   ........+++.+.++|         +|||.+++....
T Consensus       135 ~~~~~~fD~v~~~---~~~~~~~~~l~~~~~~L---------~pgG~lv~~~~~  176 (225)
T 3tr6_A          135 AGQAWQYDLIYID---ADKANTDLYYEESLKLL---------REGGLIAVDNVL  176 (225)
T ss_dssp             TTCTTCEEEEEEC---SCGGGHHHHHHHHHHHE---------EEEEEEEEECSS
T ss_pred             ccCCCCccEEEEC---CCHHHHHHHHHHHHHhc---------CCCcEEEEeCCC
Confidence                689999964   23556788999999999         679999886554

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=99.07  E-value=2e-11  Score=114.96  Aligned_cols=119  Identities=18%  Similarity=0.308  Sum_probs=72.1

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEE-EeeccC---CccCC-CCCCCcee
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTF-VCDLIS---DDLSR-QISPSSID  148 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~-~~d~~~---~~~~~-~~~~~~fD  148 (523)
                      ..+.+|||||||+|.++..+++.+ ..+|+|+|+|+.|++.|+++..    ++... ..++..   .+++. .+...+||
T Consensus        36 ~~g~~VLDiGcGtG~~t~~la~~g-~~~V~gvDis~~ml~~a~~~~~----~~~~~~~~~~~~~~~~~~~~~~~d~~~~D  110 (232)
T 3opn_A           36 INGKTCLDIGSSTGGFTDVMLQNG-AKLVYALDVGTNQLAWKIRSDE----RVVVMEQFNFRNAVLADFEQGRPSFTSID  110 (232)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHTT-CSEEEEECSSCCCCCHHHHTCT----TEEEECSCCGGGCCGGGCCSCCCSEEEEC
T ss_pred             CCCCEEEEEccCCCHHHHHHHhcC-CCEEEEEcCCHHHHHHHHHhCc----cccccccceEEEeCHhHcCcCCCCEEEEE
Confidence            456799999999999999999883 2489999999999999887542    11111 111211   11111 12345677


Q ss_pred             EEEE---------ccccccceeeecceEEec-----------CCe----EEEeeCHHHHHHHHHhCCCcEEEEEe
Q 009871          149 IVTM---------ERLTGKDQKISENFYVRG-----------DGT----RAFYFSNDFLTSLFKENGFDVEELGL  199 (523)
Q Consensus       149 ~V~~---------~~~~~~~~~~~~~~~~~~-----------~g~----~~~~~~~~~l~~ll~~~Gf~~~~~~~  199 (523)
                      ++++         .+++++++.+.-  ..++           .|.    ..+..+.+++.++++++||.+..+..
T Consensus       111 ~v~~~l~~~l~~i~rvLkpgG~lv~--~~~p~~e~~~~~~~~~G~~~d~~~~~~~~~~l~~~l~~aGf~v~~~~~  183 (232)
T 3opn_A          111 VSFISLDLILPPLYEILEKNGEVAA--LIKPQFEAGREQVGKNGIIRDPKVHQMTIEKVLKTATQLGFSVKGLTF  183 (232)
T ss_dssp             CSSSCGGGTHHHHHHHSCTTCEEEE--EECHHHHSCHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHTEEEEEEEE
T ss_pred             EEhhhHHHHHHHHHHhccCCCEEEE--EECcccccCHHHhCcCCeecCcchhHHHHHHHHHHHHHCCCEEEEEEE
Confidence            7766         333444444321  0000           010    01123667899999999999877654

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=99.07  E-value=5.6e-10  Score=111.22  Aligned_cols=120  Identities=18%  Similarity=0.186  Sum_probs=84.9

Q ss_pred             cCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC--CCcEEEEEeeccCCccCCCCCCCceeE
Q 009871           72 SGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISDDLSRQISPSSIDI  149 (523)
Q Consensus        72 ~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~~~~~~~~~~fD~  149 (523)
                      +... .+|||||||+|..+..+++.+|+.+++++|+ +.|++.|+++....  ..+++++.+|+.+     +++ ++||+
T Consensus       165 ~~~~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-----~~~-~~~D~  236 (334)
T 2ip2_A          165 DFRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQ-----EVP-SNGDI  236 (334)
T ss_dssp             CCTT-CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTT-----CCC-SSCSE
T ss_pred             CCCC-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCC-----CCC-CCCCE
Confidence            3344 8999999999999999999999999999999 99999999875322  3579999999975     233 57999


Q ss_pred             EEE-------------------ccccccceeeecceEEecC-CeE---------------EEeeCHHHHHHHHHhCCCcE
Q 009871          150 VTM-------------------ERLTGKDQKISENFYVRGD-GTR---------------AFYFSNDFLTSLFKENGFDV  194 (523)
Q Consensus       150 V~~-------------------~~~~~~~~~~~~~~~~~~~-g~~---------------~~~~~~~~l~~ll~~~Gf~~  194 (523)
                      |++                   .+.+++++.+.-.....++ +..               -..++.+++.++++++||.+
T Consensus       237 v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~  316 (334)
T 2ip2_A          237 YLLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIERTISASEPSPMSVLWDVHLFMACAGRHRTTEEVVDLLGRGGFAV  316 (334)
T ss_dssp             EEEESCGGGCCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSSCCHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEE
T ss_pred             EEEchhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhHHhhhHhHhhCCCcCCCHHHHHHHHHHCCCce
Confidence            999                   1222333332211011111 000               01247899999999999998


Q ss_pred             EEEEe
Q 009871          195 EELGL  199 (523)
Q Consensus       195 ~~~~~  199 (523)
                      +++..
T Consensus       317 ~~~~~  321 (334)
T 2ip2_A          317 ERIVD  321 (334)
T ss_dssp             EEEEE
T ss_pred             eEEEE
Confidence            77653

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=99.07  E-value=5e-10  Score=112.78  Aligned_cols=123  Identities=15%  Similarity=0.165  Sum_probs=86.1

Q ss_pred             hcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC--CCcEEEEEeeccCCccCCCCCCCcee
Q 009871           71 FSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISDDLSRQISPSSID  148 (523)
Q Consensus        71 ~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~~~~~~~~~~fD  148 (523)
                      ++..++.+|||||||+|..+..+++.+|+.+++++|+ +.|++.|+++....  ..+++++++|+.+     +++. .||
T Consensus       179 ~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-----~~~~-~~D  251 (360)
T 1tw3_A          179 YDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFE-----PLPR-KAD  251 (360)
T ss_dssp             SCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTS-----CCSS-CEE
T ss_pred             CCCccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-----CCCC-Ccc
Confidence            3445678999999999999999999999999999999 99999999876432  2479999999974     2333 499


Q ss_pred             EEEE-------------------ccccccceeeecceEE-ecCCe-E---------------EEeeCHHHHHHHHHhCCC
Q 009871          149 IVTM-------------------ERLTGKDQKISENFYV-RGDGT-R---------------AFYFSNDFLTSLFKENGF  192 (523)
Q Consensus       149 ~V~~-------------------~~~~~~~~~~~~~~~~-~~~g~-~---------------~~~~~~~~l~~ll~~~Gf  192 (523)
                      +|++                   .+.+++++.+.-.... .++.. .               ...++.+++.++|+++||
T Consensus       252 ~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf  331 (360)
T 1tw3_A          252 AIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLGGALRTREKWDGLAASAGL  331 (360)
T ss_dssp             EEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTE
T ss_pred             EEEEcccccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEeccCCCCCcchhhhccHHHhhhcCCcCCCHHHHHHHHHHCCC
Confidence            9999                   1222333332210001 01100 0               012478999999999999


Q ss_pred             cEEEEEeE
Q 009871          193 DVEELGLC  200 (523)
Q Consensus       193 ~~~~~~~~  200 (523)
                      +++++...
T Consensus       332 ~~~~~~~~  339 (360)
T 1tw3_A          332 VVEEVRQL  339 (360)
T ss_dssp             EEEEEEEE
T ss_pred             eEEEEEeC
Confidence            98877543

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=99.07  E-value=7.8e-10  Score=110.27  Aligned_cols=155  Identities=15%  Similarity=0.149  Sum_probs=84.5

Q ss_pred             hhcCCCCCeEEEECCCccccHHHHHhh-CCCCEEEEEeCCHHHHHHHHhcccc------------CCCcEEEEEeeccCC
Q 009871           70 YFSGAGRKDVLEVGCGAGNTIFPLIAA-YPDVFVYACDFSPRAVNLVMTHKDF------------TETRVSTFVCDLISD  136 (523)
Q Consensus        70 ~~~~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~v~gvD~S~~~l~~a~~~~~~------------~~~~v~~~~~d~~~~  136 (523)
                      .+...++.+|||+|||+|.++..+++. ++..+|+|+|+|+.+++.|+++...            ...++++.++|+.+.
T Consensus       100 ~l~~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~  179 (336)
T 2b25_A          100 MMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGA  179 (336)
T ss_dssp             HHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCC
T ss_pred             hcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHc
Confidence            344567889999999999999999998 6778999999999999999997642            125799999999864


Q ss_pred             ccCCCCCCCceeEEEEc-----cccccceeeecceEEecCCeEEEee-CHHHHHHHHH---h--CCCcEEEEEeEeeeee
Q 009871          137 DLSRQISPSSIDIVTME-----RLTGKDQKISENFYVRGDGTRAFYF-SNDFLTSLFK---E--NGFDVEELGLCCKQVE  205 (523)
Q Consensus       137 ~~~~~~~~~~fD~V~~~-----~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~l~~ll~---~--~Gf~~~~~~~~~~~~~  205 (523)
                      .  .++++++||+|++.     .++....+     .++++|.++.+. +.+++..+++   +  .+|....+..      
T Consensus       180 ~--~~~~~~~fD~V~~~~~~~~~~l~~~~~-----~LkpgG~lv~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~------  246 (336)
T 2b25_A          180 T--EDIKSLTFDAVALDMLNPHVTLPVFYP-----HLKHGGVCAVYVVNITQVIELLDGIRTCELALSCEKISE------  246 (336)
T ss_dssp             C---------EEEEEECSSSTTTTHHHHGG-----GEEEEEEEEEEESSHHHHHHHHHHHHHHTCCEEEEEEEC------
T ss_pred             c--cccCCCCeeEEEECCCCHHHHHHHHHH-----hcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCcccceEEE------
Confidence            1  13456789999981     11122222     577888877543 4555554444   3  3343322110      


Q ss_pred             ecccCccceeEEEEEEEEecCCCCCCccccchhhhhccccc
Q 009871          206 NRARELVMNRRWVQAVFCSSGGATSSSEEASVRVDIFNQAI  246 (523)
Q Consensus       206 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (523)
                            ...+.|.....++..+   .+...+-++||...++
T Consensus       247 ------~~~~~w~~~~~~~~~g---~y~~~l~~aGF~~v~~  278 (336)
T 2b25_A          247 ------VIVRDWLVCLAKQKNG---ILAQKVESKINTDVQL  278 (336)
T ss_dssp             ------CCCCCEEECC-------------------------
T ss_pred             ------ecccceEEEeeccccc---chhhhhcccccccccc
Confidence                  1124455444443332   3434566677777665

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=99.06  E-value=7e-11  Score=109.46  Aligned_cols=65  Identities=17%  Similarity=0.101  Sum_probs=57.2

Q ss_pred             CCCeEEEECCCccccHHHHHhhCCCC-EEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871           75 GRKDVLEVGCGAGNTIFPLIAAYPDV-FVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM  152 (523)
Q Consensus        75 ~~~~iLDiGcG~G~~~~~l~~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~  152 (523)
                      ++.+|||||||+|..+..+     +. +|+|+|+|+.|++.|+++.    .++.+.++|+.++    ++++++||+|++
T Consensus        36 ~~~~vLdiG~G~G~~~~~l-----~~~~v~~vD~s~~~~~~a~~~~----~~~~~~~~d~~~~----~~~~~~fD~v~~  101 (211)
T 2gs9_A           36 PGESLLEVGAGTGYWLRRL-----PYPQKVGVEPSEAMLAVGRRRA----PEATWVRAWGEAL----PFPGESFDVVLL  101 (211)
T ss_dssp             CCSEEEEETCTTCHHHHHC-----CCSEEEEECCCHHHHHHHHHHC----TTSEEECCCTTSC----CSCSSCEEEEEE
T ss_pred             CCCeEEEECCCCCHhHHhC-----CCCeEEEEeCCHHHHHHHHHhC----CCcEEEEcccccC----CCCCCcEEEEEE
Confidence            6789999999999998776     34 7999999999999999875    5688999999877    677889999999

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=99.06  E-value=5.9e-10  Score=110.18  Aligned_cols=110  Identities=16%  Similarity=0.041  Sum_probs=82.7

Q ss_pred             HHhcCCCCCCCCeEEEECCCccHHHHHHHhcCC--CEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcc
Q 009871          326 VLARNPTIVAGKKVLELGCGCGGICSMVAAGSA--DLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHI  403 (523)
Q Consensus       326 ~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~--~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~  403 (523)
                      .+.......++.+|||+|||+|.++..++..++  .+|+++|+++.+++.+++|+..++..    ++.+...|..+..  
T Consensus        66 ~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~----~v~~~~~d~~~~~--  139 (317)
T 1dl5_A           66 LFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIE----NVIFVCGDGYYGV--  139 (317)
T ss_dssp             HHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCC----SEEEEESCGGGCC--
T ss_pred             HHHHhcCCCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCC----CeEEEECChhhcc--
Confidence            333333455788999999999988888887753  47999999999999999999987764    3677666654321  


Q ss_pred             hhhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee
Q 009871          404 EAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIF  461 (523)
Q Consensus       404 ~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~  461 (523)
                           ...++||+|++..++.+..      +.+.++|         +|||.+++....
T Consensus       140 -----~~~~~fD~Iv~~~~~~~~~------~~~~~~L---------kpgG~lvi~~~~  177 (317)
T 1dl5_A          140 -----PEFSPYDVIFVTVGVDEVP------ETWFTQL---------KEGGRVIVPINL  177 (317)
T ss_dssp             -----GGGCCEEEEEECSBBSCCC------HHHHHHE---------EEEEEEEEEBCB
T ss_pred             -----ccCCCeEEEEEcCCHHHHH------HHHHHhc---------CCCcEEEEEECC
Confidence                 1135899999998876543      5778899         679999887543

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=99.05  E-value=3.7e-10  Score=112.73  Aligned_cols=113  Identities=12%  Similarity=0.114  Sum_probs=80.1

Q ss_pred             CCCCCCeEEEECCCccHHHHHHHhc-CCCEEEEEcCChHHHHHHHHHHH-------hcCCCCCCCceEEEeeecCCCCcc
Q 009871          332 TIVAGKKVLELGCGCGGICSMVAAG-SADLVVATDGDSIALDLLAQNVT-------ANLKPPFLAKLITKRLEWGNRDHI  403 (523)
Q Consensus       332 ~~~~~~~VLElG~G~G~l~~~~a~~-~~~~V~~~D~~~~~l~~~~~n~~-------~n~~~~~~~~v~~~~ldw~~~~~~  403 (523)
                      .+.++.+|||||||+|.++..+|.. ++.+|+|+|+++.+++.|++|++       .+++.  ..++.+...|..+.. .
T Consensus       170 ~l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~--~~rVefi~GD~~~lp-~  246 (438)
T 3uwp_A          170 KMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKK--HAEYTLERGDFLSEE-W  246 (438)
T ss_dssp             CCCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBC--CCEEEEEECCTTSHH-H
T ss_pred             CCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCC--CCCeEEEECcccCCc-c
Confidence            4557889999999999888888765 55579999999999999988763       33432  146777766654421 1


Q ss_pred             hhhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee
Q 009871          404 EAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIF  461 (523)
Q Consensus       404 ~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~  461 (523)
                      ..  .+  ..||+|+++.+++ .......+..+.+.|         +|||.++++...
T Consensus       247 ~d--~~--~~aDVVf~Nn~~F-~pdl~~aL~Ei~RvL---------KPGGrIVssE~f  290 (438)
T 3uwp_A          247 RE--RI--ANTSVIFVNNFAF-GPEVDHQLKERFANM---------KEGGRIVSSKPF  290 (438)
T ss_dssp             HH--HH--HTCSEEEECCTTC-CHHHHHHHHHHHTTS---------CTTCEEEESSCS
T ss_pred             cc--cc--CCccEEEEccccc-CchHHHHHHHHHHcC---------CCCcEEEEeecc
Confidence            00  01  3799999987655 445556666777778         789999876544

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=99.05  E-value=1.8e-09  Score=106.55  Aligned_cols=77  Identities=16%  Similarity=0.177  Sum_probs=61.3

Q ss_pred             CCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhcccc--------CCCcEEEEEeeccCCccCCCCC--C
Q 009871           75 GRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDF--------TETRVSTFVCDLISDDLSRQIS--P  144 (523)
Q Consensus        75 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~--------~~~~v~~~~~d~~~~~~~~~~~--~  144 (523)
                      ++.+|||||||+|.++..+++. +..+|+|+|+|+.|++.|+++...        ...+++++++|+..+.+..+++  +
T Consensus        34 ~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~  112 (313)
T 3bgv_A           34 RDITVLDLGCGKGGDLLKWKKG-RINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQ  112 (313)
T ss_dssp             -CCEEEEETCTTTTTHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTT
T ss_pred             CCCEEEEECCCCcHHHHHHHhc-CCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCC
Confidence            6789999999999999999875 467899999999999999987532        2247899999998764322243  4


Q ss_pred             CceeEEEE
Q 009871          145 SSIDIVTM  152 (523)
Q Consensus       145 ~~fD~V~~  152 (523)
                      ++||+|++
T Consensus       113 ~~fD~V~~  120 (313)
T 3bgv_A          113 MCFDICSC  120 (313)
T ss_dssp             CCEEEEEE
T ss_pred             CCEEEEEE
Confidence            59999999

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=99.05  E-value=2.7e-10  Score=112.44  Aligned_cols=114  Identities=18%  Similarity=0.128  Sum_probs=83.5

Q ss_pred             CCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCC---CCCCceEEEeeecCCCCcchhhhhh--
Q 009871          335 AGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKP---PFLAKLITKRLEWGNRDHIEAIKEE--  409 (523)
Q Consensus       335 ~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~---~~~~~v~~~~ldw~~~~~~~~~~~~--  409 (523)
                      ++.+|||||||+|.++..+++.+..+|+++|+++.|++.++++...+...   ....++.+...|..+.....   ++  
T Consensus        34 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~---~~~~  110 (313)
T 3bgv_A           34 RDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLID---KFRD  110 (313)
T ss_dssp             -CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTT---TCSS
T ss_pred             CCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhh---hccc
Confidence            66799999999998888888776779999999999999999988764210   01135667666665432100   12  


Q ss_pred             cCCCccEEEEccccCCC-C---ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEe
Q 009871          410 NNEGFEVILGTDVSYIP-E---AILPLFATAKELTASSNKSLREDQQPAFILCHI  460 (523)
Q Consensus       410 ~~~~fD~Ii~~d~~y~~-~---~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~  460 (523)
                      ..++||+|+++.++++. +   ....+++.+.++|         +|||.++++..
T Consensus       111 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L---------kpgG~li~~~~  156 (313)
T 3bgv_A          111 PQMCFDICSCQFVCHYSFESYEQADMMLRNACERL---------SPGGYFIGTTP  156 (313)
T ss_dssp             TTCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTE---------EEEEEEEEEEE
T ss_pred             CCCCEEEEEEecchhhccCCHHHHHHHHHHHHHHh---------CCCcEEEEecC
Confidence            23489999999988765 3   3568889999999         67999988765

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=99.05  E-value=3.6e-10  Score=109.19  Aligned_cols=78  Identities=22%  Similarity=0.244  Sum_probs=61.5

Q ss_pred             CCCCeEEEECCCc---cccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccC-------CCCC
Q 009871           74 AGRKDVLEVGCGA---GNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLS-------RQIS  143 (523)
Q Consensus        74 ~~~~~iLDiGcG~---G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~-------~~~~  143 (523)
                      ....+|||||||+   |..+..+.+.+|+.+|+|+|+|+.|++.|+++... ..+++++++|+.+.+..       ..++
T Consensus        76 ~~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~-~~~v~~~~~D~~~~~~~~~~~~~~~~~d  154 (274)
T 2qe6_A           76 AGISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAK-DPNTAVFTADVRDPEYILNHPDVRRMID  154 (274)
T ss_dssp             TCCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTT-CTTEEEEECCTTCHHHHHHSHHHHHHCC
T ss_pred             cCCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCC-CCCeEEEEeeCCCchhhhccchhhccCC
Confidence            3457999999999   99887777778889999999999999999997632 36799999999753210       0133


Q ss_pred             CCceeEEEE
Q 009871          144 PSSIDIVTM  152 (523)
Q Consensus       144 ~~~fD~V~~  152 (523)
                      ..+||+|++
T Consensus       155 ~~~~d~v~~  163 (274)
T 2qe6_A          155 FSRPAAIML  163 (274)
T ss_dssp             TTSCCEEEE
T ss_pred             CCCCEEEEE
Confidence            358999998

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=99.05  E-value=3.2e-10  Score=113.66  Aligned_cols=119  Identities=16%  Similarity=0.158  Sum_probs=81.0

Q ss_pred             hcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccc--cCCCcEEEEEeeccCCccCCCCCCCcee
Q 009871           71 FSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKD--FTETRVSTFVCDLISDDLSRQISPSSID  148 (523)
Q Consensus        71 ~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~--~~~~~v~~~~~d~~~~~~~~~~~~~~fD  148 (523)
                      ++..+..+|||||||+|..+..+++++|+.+++++|+ +.++.  +++..  ....+++++.+|+. .    +++  +||
T Consensus       180 ~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~--~~~~~~~~~~~~v~~~~~d~~-~----~~p--~~D  249 (348)
T 3lst_A          180 GDFPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDR-AEVVA--RHRLDAPDVAGRWKVVEGDFL-R----EVP--HAD  249 (348)
T ss_dssp             SCCCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEEC-HHHHT--TCCCCCGGGTTSEEEEECCTT-T----CCC--CCS
T ss_pred             CCccCCceEEEECCccCHHHHHHHHHCCCCEEEEecC-HHHhh--cccccccCCCCCeEEEecCCC-C----CCC--CCc
Confidence            3445678999999999999999999999999999999 45555  33322  22467999999996 3    344  899


Q ss_pred             EEEE-------------------ccccccceeeecceEEecCC-eEE---------------EeeCHHHHHHHHHhCCCc
Q 009871          149 IVTM-------------------ERLTGKDQKISENFYVRGDG-TRA---------------FYFSNDFLTSLFKENGFD  193 (523)
Q Consensus       149 ~V~~-------------------~~~~~~~~~~~~~~~~~~~g-~~~---------------~~~~~~~l~~ll~~~Gf~  193 (523)
                      +|++                   .+.+++++++.-.....++. ...               ..++.+++.++++++||+
T Consensus       250 ~v~~~~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~  329 (348)
T 3lst_A          250 VHVLKRILHNWGDEDSVRILTNCRRVMPAHGRVLVIDAVVPEGNDAHQSKEMDFMMLAARTGQERTAAELEPLFTAAGLR  329 (348)
T ss_dssp             EEEEESCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEECCBCSSSSCCHHHHHHHHHHHTTSCCCCBHHHHHHHHHHTTEE
T ss_pred             EEEEehhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhhhcChhhhhcCCCcCCCHHHHHHHHHHCCCc
Confidence            9999                   22234444332110111110 000               024789999999999999


Q ss_pred             EEEEEe
Q 009871          194 VEELGL  199 (523)
Q Consensus       194 ~~~~~~  199 (523)
                      ++++..
T Consensus       330 ~~~~~~  335 (348)
T 3lst_A          330 LDRVVG  335 (348)
T ss_dssp             EEEEEE
T ss_pred             eEEEEE
Confidence            887753

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=99.05  E-value=7.8e-10  Score=105.14  Aligned_cols=106  Identities=13%  Similarity=0.035  Sum_probs=80.9

Q ss_pred             CCCeEEEECCCccHHHHHHHhcC--CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhh---
Q 009871          335 AGKKVLELGCGCGGICSMVAAGS--ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEE---  409 (523)
Q Consensus       335 ~~~~VLElG~G~G~l~~~~a~~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~---  409 (523)
                      ++++|||||||+|..+..++...  ..+|+++|+++.+++.+++|+..+++.   .++.+...|..+     .+..+   
T Consensus        79 ~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~---~~i~~~~gda~~-----~l~~l~~~  150 (247)
T 1sui_A           79 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVD---HKIDFREGPALP-----VLDEMIKD  150 (247)
T ss_dssp             TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCG---GGEEEEESCHHH-----HHHHHHHS
T ss_pred             CcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC---CCeEEEECCHHH-----HHHHHHhc
Confidence            56799999999998888887763  469999999999999999999987763   467666544321     11112   


Q ss_pred             --cCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEe
Q 009871          410 --NNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHI  460 (523)
Q Consensus       410 --~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~  460 (523)
                        ..++||+|++.   ........+++.+.++|         +|||.+++...
T Consensus       151 ~~~~~~fD~V~~d---~~~~~~~~~l~~~~~~L---------kpGG~lv~d~~  191 (247)
T 1sui_A          151 EKNHGSYDFIFVD---ADKDNYLNYHKRLIDLV---------KVGGVIGYDNT  191 (247)
T ss_dssp             GGGTTCBSEEEEC---SCSTTHHHHHHHHHHHB---------CTTCCEEEECT
T ss_pred             cCCCCCEEEEEEc---CchHHHHHHHHHHHHhC---------CCCeEEEEecC
Confidence              14689999985   23567889999999999         77999887543

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=99.04  E-value=4.3e-10  Score=105.70  Aligned_cols=79  Identities=14%  Similarity=0.093  Sum_probs=64.7

Q ss_pred             HhhhhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCc
Q 009871           67 WGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSS  146 (523)
Q Consensus        67 ~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  146 (523)
                      +.+.+...++.+|||||||+|..+..+++.+  .+|+|+|+|+.|++.|+++....+ +++++++|+.+.    ...+++
T Consensus        62 ~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~-~v~~~~~d~~~~----~~~~~~  134 (231)
T 1vbf_A           62 MLDELDLHKGQKVLEIGTGIGYYTALIAEIV--DKVVSVEINEKMYNYASKLLSYYN-NIKLILGDGTLG----YEEEKP  134 (231)
T ss_dssp             HHHHTTCCTTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTCS-SEEEEESCGGGC----CGGGCC
T ss_pred             HHHhcCCCCCCEEEEEcCCCCHHHHHHHHHc--CEEEEEeCCHHHHHHHHHHHhhcC-CeEEEECCcccc----cccCCC
Confidence            3344455678899999999999999999885  689999999999999999865443 799999999863    224578


Q ss_pred             eeEEEE
Q 009871          147 IDIVTM  152 (523)
Q Consensus       147 fD~V~~  152 (523)
                      ||+|++
T Consensus       135 fD~v~~  140 (231)
T 1vbf_A          135 YDRVVV  140 (231)
T ss_dssp             EEEEEE
T ss_pred             ccEEEE
Confidence            999998

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=99.04  E-value=2.1e-09  Score=110.85  Aligned_cols=143  Identities=15%  Similarity=0.099  Sum_probs=96.7

Q ss_pred             HHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCC
Q 009871          320 AHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGN  399 (523)
Q Consensus       320 a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~  399 (523)
                      +..+.+++.......++.+|||||||+|.++..++.. ..+|+++|+|+.+++.|++|+..|++.    ++.+...|+.+
T Consensus       271 ~e~l~~~~~~~l~~~~~~~VLDlgcG~G~~~~~la~~-~~~V~gvD~s~~al~~A~~n~~~~~~~----~v~f~~~d~~~  345 (433)
T 1uwv_A          271 NQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQ-AASVVGVEGVPALVEKGQQNARLNGLQ----NVTFYHENLEE  345 (433)
T ss_dssp             HHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHTTCC----SEEEEECCTTS
T ss_pred             HHHHHHHHHHhhcCCCCCEEEECCCCCCHHHHHHHhh-CCEEEEEeCCHHHHHHHHHHHHHcCCC----ceEEEECCHHH
Confidence            4445555544333446789999999999998888887 568999999999999999999998763    57787777765


Q ss_pred             CCcchhhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhHHHHHHHHcCCE
Q 009871          400 RDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFR  479 (523)
Q Consensus       400 ~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~~~~~~~~gf~  479 (523)
                      ...  . .++...+||+|++ |.-|...  ..+++.+.. +         +|++.+|++.....  ...-...+.+.||+
T Consensus       346 ~l~--~-~~~~~~~fD~Vv~-dPPr~g~--~~~~~~l~~-~---------~p~~ivyvsc~p~t--lard~~~l~~~Gy~  407 (433)
T 1uwv_A          346 DVT--K-QPWAKNGFDKVLL-DPARAGA--AGVMQQIIK-L---------EPIRIVYVSCNPAT--LARDSEALLKAGYT  407 (433)
T ss_dssp             CCS--S-SGGGTTCCSEEEE-CCCTTCC--HHHHHHHHH-H---------CCSEEEEEESCHHH--HHHHHHHHHHTTCE
T ss_pred             Hhh--h-hhhhcCCCCEEEE-CCCCccH--HHHHHHHHh-c---------CCCeEEEEECChHH--HHhhHHHHHHCCcE
Confidence            311  0 0133468999998 4444432  356665554 3         46788877653321  12224455678999


Q ss_pred             EEEEcC
Q 009871          480 LVDKWP  485 (523)
Q Consensus       480 ~~~~~~  485 (523)
                      +..+..
T Consensus       408 ~~~~~~  413 (433)
T 1uwv_A          408 IARLAM  413 (433)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            988643

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=99.04  E-value=2.3e-10  Score=115.47  Aligned_cols=80  Identities=20%  Similarity=0.288  Sum_probs=67.1

Q ss_pred             hhhhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCC----CcEEEEEeeccCCccCCCCC
Q 009871           68 GRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE----TRVSTFVCDLISDDLSRQIS  143 (523)
Q Consensus        68 ~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~----~~v~~~~~d~~~~~~~~~~~  143 (523)
                      .+.++...+.+|||+|||+|.++..+++.+|+.+|+|+|+|+.|++.|+++...++    .++++.++|+.+     +++
T Consensus       215 l~~l~~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~-----~~~  289 (375)
T 4dcm_A          215 MQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS-----GVE  289 (375)
T ss_dssp             HHTCCCSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTT-----TCC
T ss_pred             HHhCcccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhc-----cCC
Confidence            34455455689999999999999999999989999999999999999999765432    358999999975     356


Q ss_pred             CCceeEEEE
Q 009871          144 PSSIDIVTM  152 (523)
Q Consensus       144 ~~~fD~V~~  152 (523)
                      +++||+|++
T Consensus       290 ~~~fD~Ii~  298 (375)
T 4dcm_A          290 PFRFNAVLC  298 (375)
T ss_dssp             TTCEEEEEE
T ss_pred             CCCeeEEEE
Confidence            789999999

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=99.04  E-value=8.1e-10  Score=112.53  Aligned_cols=112  Identities=15%  Similarity=0.113  Sum_probs=80.4

Q ss_pred             CCCCCCeEEEECCCccHHHHHHHhc-CCCEEEEEcCChHHHHHH-------HHHHHhcCCCCCCCceEEEee-ecCCCCc
Q 009871          332 TIVAGKKVLELGCGCGGICSMVAAG-SADLVVATDGDSIALDLL-------AQNVTANLKPPFLAKLITKRL-EWGNRDH  402 (523)
Q Consensus       332 ~~~~~~~VLElG~G~G~l~~~~a~~-~~~~V~~~D~~~~~l~~~-------~~n~~~n~~~~~~~~v~~~~l-dw~~~~~  402 (523)
                      ...++.+|||||||+|.++..++.. ++.+|+++|+++.+++.|       +.|+..+++.  ..++.+... ++...  
T Consensus       239 ~l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~--~~nV~~i~gD~~~~~--  314 (433)
T 1u2z_A          239 QLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMR--LNNVEFSLKKSFVDN--  314 (433)
T ss_dssp             TCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBC--CCCEEEEESSCSTTC--
T ss_pred             CCCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCC--CCceEEEEcCccccc--
Confidence            4557889999999999988888886 556899999999999988       8898887642  134555432 12111  


Q ss_pred             chhhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEE
Q 009871          403 IEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCH  459 (523)
Q Consensus       403 ~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~  459 (523)
                       ..+.. ...+||+|+++.+++. ..+...++.+.+.|         +|||.+++..
T Consensus       315 -~~~~~-~~~~FDvIvvn~~l~~-~d~~~~L~el~r~L---------KpGG~lVi~d  359 (433)
T 1u2z_A          315 -NRVAE-LIPQCDVILVNNFLFD-EDLNKKVEKILQTA---------KVGCKIISLK  359 (433)
T ss_dssp             -HHHHH-HGGGCSEEEECCTTCC-HHHHHHHHHHHTTC---------CTTCEEEESS
T ss_pred             -ccccc-ccCCCCEEEEeCcccc-ccHHHHHHHHHHhC---------CCCeEEEEee
Confidence             00100 1358999999877743 55677778888888         7799998864

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=99.04  E-value=1.5e-09  Score=100.07  Aligned_cols=116  Identities=20%  Similarity=0.250  Sum_probs=78.8

Q ss_pred             CCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871           73 GAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM  152 (523)
Q Consensus        73 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~  152 (523)
                      ..++.+|||+|||+|.++..+++.+ ..+|+|+|+|+.|++.|+++....+.+++++++|+.++       +++||+|++
T Consensus        47 ~~~~~~vlD~g~G~G~~~~~l~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~-------~~~~D~v~~  118 (207)
T 1wy7_A           47 DIEGKVVADLGAGTGVLSYGALLLG-AKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEF-------NSRVDIVIM  118 (207)
T ss_dssp             SSTTCEEEEETCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGC-------CCCCSEEEE
T ss_pred             CCCcCEEEEeeCCCCHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHHHcCCCEEEEECchHHc-------CCCCCEEEE
Confidence            3467899999999999999999884 24799999999999999998754444799999999865       248999999


Q ss_pred             -cccc--ccc--ee-eecce-EEecCCeEEEee----CHHHHHHHHHhCCCcEEEEE
Q 009871          153 -ERLT--GKD--QK-ISENF-YVRGDGTRAFYF----SNDFLTSLFKENGFDVEELG  198 (523)
Q Consensus       153 -~~~~--~~~--~~-~~~~~-~~~~~g~~~~~~----~~~~l~~ll~~~Gf~~~~~~  198 (523)
                       ..+.  ...  .. +.... .+  ++......    +.+.+.+.+.+.||....+.
T Consensus       119 ~~p~~~~~~~~~~~~l~~~~~~l--~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~  173 (207)
T 1wy7_A          119 NPPFGSQRKHADRPFLLKAFEIS--DVVYSIHLAKPEVRRFIEKFSWEHGFVVTHRL  173 (207)
T ss_dssp             CCCCSSSSTTTTHHHHHHHHHHC--SEEEEEEECCHHHHHHHHHHHHHTTEEEEEEE
T ss_pred             cCCCccccCCchHHHHHHHHHhc--CcEEEEEeCCcCCHHHHHHHHHHCCCeEEEEE
Confidence             1110  000  00 00000 11  22222221    24567788899999875554

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=99.03  E-value=4.6e-10  Score=105.75  Aligned_cols=106  Identities=12%  Similarity=0.052  Sum_probs=81.4

Q ss_pred             CCCCeEEEECCCccHHHHHHHhcC-CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhc-C
Q 009871          334 VAGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEEN-N  411 (523)
Q Consensus       334 ~~~~~VLElG~G~G~l~~~~a~~~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~-~  411 (523)
                      .++.+|||+|||+|..+..++... ..+|+++|+++.+++.+++|+..++..   .++.+...|..+.  .   .... +
T Consensus        53 ~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~---~~v~~~~~d~~~~--~---~~~~~~  124 (233)
T 2gpy_A           53 AAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLE---SRIELLFGDALQL--G---EKLELY  124 (233)
T ss_dssp             HCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCT---TTEEEECSCGGGS--H---HHHTTS
T ss_pred             cCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC---CcEEEEECCHHHH--H---HhcccC
Confidence            367799999999998888888774 469999999999999999999988764   4566665554321  1   1111 4


Q ss_pred             CCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEE
Q 009871          412 EGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCH  459 (523)
Q Consensus       412 ~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~  459 (523)
                      ++||+|++....   .....+++.+.++|         +|||.+++..
T Consensus       125 ~~fD~I~~~~~~---~~~~~~l~~~~~~L---------~pgG~lv~~~  160 (233)
T 2gpy_A          125 PLFDVLFIDAAK---GQYRRFFDMYSPMV---------RPGGLILSDN  160 (233)
T ss_dssp             CCEEEEEEEGGG---SCHHHHHHHHGGGE---------EEEEEEEEET
T ss_pred             CCccEEEECCCH---HHHHHHHHHHHHHc---------CCCeEEEEEc
Confidence            689999986443   46788999999999         6799998863

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=99.03  E-value=9.4e-10  Score=109.67  Aligned_cols=133  Identities=11%  Similarity=0.071  Sum_probs=86.4

Q ss_pred             CCCCCCeEEEECCCccHHHHHHHhc-CC-CEEEEEcCChHHHHHHHHHHHh-------cCCCCCCCceEEEeeecCCCCc
Q 009871          332 TIVAGKKVLELGCGCGGICSMVAAG-SA-DLVVATDGDSIALDLLAQNVTA-------NLKPPFLAKLITKRLEWGNRDH  402 (523)
Q Consensus       332 ~~~~~~~VLElG~G~G~l~~~~a~~-~~-~~V~~~D~~~~~l~~~~~n~~~-------n~~~~~~~~v~~~~ldw~~~~~  402 (523)
                      ...++.+|||+|||+|.++..++.. ++ .+|+++|+++.+++.|++|+..       |+......++.+...|..+.. 
T Consensus       102 ~~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~-  180 (336)
T 2b25_A          102 DINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGAT-  180 (336)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC-
T ss_pred             CCCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHcc-
Confidence            3457889999999999998888886 55 6999999999999999999984       433222246777666654421 


Q ss_pred             chhhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhHHHHHHHH--cCCEE
Q 009871          403 IEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQ--CGFRL  480 (523)
Q Consensus       403 ~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~~~~~~~--~gf~~  480 (523)
                          .++..++||+|++.-     .....+++.+.++|         +|||.+++..... .....+++.+++  .+|..
T Consensus       181 ----~~~~~~~fD~V~~~~-----~~~~~~l~~~~~~L---------kpgG~lv~~~~~~-~~~~~~~~~l~~~~~~~~~  241 (336)
T 2b25_A          181 ----EDIKSLTFDAVALDM-----LNPHVTLPVFYPHL---------KHGGVCAVYVVNI-TQVIELLDGIRTCELALSC  241 (336)
T ss_dssp             -----------EEEEEECS-----SSTTTTHHHHGGGE---------EEEEEEEEEESSH-HHHHHHHHHHHHHTCCEEE
T ss_pred             ----cccCCCCeeEEEECC-----CCHHHHHHHHHHhc---------CCCcEEEEEeCCH-HHHHHHHHHHHhcCCCccc
Confidence                122345799999842     22334788889999         6799988765431 122234454443  34444


Q ss_pred             EEEc
Q 009871          481 VDKW  484 (523)
Q Consensus       481 ~~~~  484 (523)
                      ..++
T Consensus       242 ~~~~  245 (336)
T 2b25_A          242 EKIS  245 (336)
T ss_dssp             EEEE
T ss_pred             ceEE
Confidence            4433

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=99.03  E-value=2.5e-10  Score=114.76  Aligned_cols=122  Identities=16%  Similarity=0.147  Sum_probs=85.3

Q ss_pred             hcCCCCCeEEEECCCccccHHHHHhhC-CCCEEEEEeCCHHHHHHHHhccccCC-CcEEEEEeeccCCccCCCCCCCcee
Q 009871           71 FSGAGRKDVLEVGCGAGNTIFPLIAAY-PDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQISPSSID  148 (523)
Q Consensus        71 ~~~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~v~gvD~S~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD  148 (523)
                      ....++.+|||+|||+|.++..++... ++.+|+|+|+|+.|++.|+++....+ .++++.++|+.++    +.+.+.||
T Consensus       199 ~~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~----~~~~~~~D  274 (354)
T 3tma_A          199 ADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHL----PRFFPEVD  274 (354)
T ss_dssp             TTCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGG----GGTCCCCS
T ss_pred             hCCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhC----ccccCCCC
Confidence            344567899999999999999999986 77889999999999999999875433 3799999999976    44556799


Q ss_pred             EEEE-----ccccccc------eeeec--ceEEecCCeEEEeeCH-HHHHHHHHhCCCcEEEE
Q 009871          149 IVTM-----ERLTGKD------QKISE--NFYVRGDGTRAFYFSN-DFLTSLFKENGFDVEEL  197 (523)
Q Consensus       149 ~V~~-----~~~~~~~------~~~~~--~~~~~~~g~~~~~~~~-~~l~~ll~~~Gf~~~~~  197 (523)
                      +|++     .++....      ..+..  .-.++++|..++.... +.+..+++ .||...+.
T Consensus       275 ~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~~~~~~~~~~~-~g~~~~~~  336 (354)
T 3tma_A          275 RILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTLRPALLKRALP-PGFALRHA  336 (354)
T ss_dssp             EEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEESCHHHHHHHCC-TTEEEEEE
T ss_pred             EEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHhh-cCcEEEEE
Confidence            9999     1221000      00000  1145678887776543 34555555 78876443

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=99.03  E-value=1.1e-09  Score=105.77  Aligned_cols=134  Identities=13%  Similarity=0.070  Sum_probs=90.1

Q ss_pred             CCCCeEEEECCCccHHHHHHHhc--CCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcC
Q 009871          334 VAGKKVLELGCGCGGICSMVAAG--SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENN  411 (523)
Q Consensus       334 ~~~~~VLElG~G~G~l~~~~a~~--~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~  411 (523)
                      .++.+|||+|||+|+.+..+++.  +..+|+++|+++.+++.+++|+..++..    ++.+...|..+   .........
T Consensus        82 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~----~v~~~~~D~~~---~~~~~~~~~  154 (274)
T 3ajd_A           82 REDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVL----NTIIINADMRK---YKDYLLKNE  154 (274)
T ss_dssp             CTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCC----SEEEEESCHHH---HHHHHHHTT
T ss_pred             CCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCC----cEEEEeCChHh---cchhhhhcc
Confidence            47889999999999999888874  3469999999999999999999998763    45555443321   100000024


Q ss_pred             CCccEEEEccccCC------------------CCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCC-hhHHHHH
Q 009871          412 EGFEVILGTDVSYI------------------PEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVD-EPSMLSA  472 (523)
Q Consensus       412 ~~fD~Ii~~d~~y~------------------~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~-~~~~~~~  472 (523)
                      ++||+|++......                  ......+++.+.++|         +|||.++++...-... .+..++.
T Consensus       155 ~~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~L---------kpgG~lv~stcs~~~~ene~~v~~  225 (274)
T 3ajd_A          155 IFFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLL---------KKDGELVYSTCSMEVEENEEVIKY  225 (274)
T ss_dssp             CCEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHE---------EEEEEEEEEESCCCTTSSHHHHHH
T ss_pred             ccCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhC---------CCCCEEEEEECCCChHHhHHHHHH
Confidence            68999997522211                  135578899999999         6799998866543222 2334443


Q ss_pred             -HHH-cCCEEEEE
Q 009871          473 -ATQ-CGFRLVDK  483 (523)
Q Consensus       473 -~~~-~gf~~~~~  483 (523)
                       +++ .+|++..+
T Consensus       226 ~l~~~~~~~~~~~  238 (274)
T 3ajd_A          226 ILQKRNDVELIII  238 (274)
T ss_dssp             HHHHCSSEEEECC
T ss_pred             HHHhCCCcEEecC
Confidence             434 46777654

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=99.03  E-value=7.7e-10  Score=110.88  Aligned_cols=129  Identities=12%  Similarity=0.053  Sum_probs=95.1

Q ss_pred             CCCCCCeEEEECCCccHHHHHHHhcCCC-EEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhc
Q 009871          332 TIVAGKKVLELGCGCGGICSMVAAGSAD-LVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEEN  410 (523)
Q Consensus       332 ~~~~~~~VLElG~G~G~l~~~~a~~~~~-~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~  410 (523)
                      ...++.+|||||||+|.++..+++..+. +++++|+ +.++.  +.++...+.   ..++.+...|..+.        + 
T Consensus       181 ~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~--~~~~~~~~~---~~~v~~~~~d~~~~--------~-  245 (348)
T 3lst_A          181 DFPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDR-AEVVA--RHRLDAPDV---AGRWKVVEGDFLRE--------V-  245 (348)
T ss_dssp             CCCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEEC-HHHHT--TCCCCCGGG---TTSEEEEECCTTTC--------C-
T ss_pred             CccCCceEEEECCccCHHHHHHHHHCCCCEEEEecC-HHHhh--cccccccCC---CCCeEEEecCCCCC--------C-
Confidence            3446789999999999888888887544 8999999 55554  322222222   25688877766421        2 


Q ss_pred             CCCccEEEEccccCCCCCh--HHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecC-----------------------CC
Q 009871          411 NEGFEVILGTDVSYIPEAI--LPLFATAKELTASSNKSLREDQQPAFILCHIFRQ-----------------------VD  465 (523)
Q Consensus       411 ~~~fD~Ii~~d~~y~~~~~--~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~-----------------------~~  465 (523)
                      + +||+|++..++++....  ..+++.+.++|         +|||.+++......                       .+
T Consensus       246 p-~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L---------kpgG~l~i~e~~~~~~~~~~~~~~~d~~~~~~~~~~~~t  315 (348)
T 3lst_A          246 P-HADVHVLKRILHNWGDEDSVRILTNCRRVM---------PAHGRVLVIDAVVPEGNDAHQSKEMDFMMLAARTGQERT  315 (348)
T ss_dssp             C-CCSEEEEESCGGGSCHHHHHHHHHHHHHTC---------CTTCEEEEEECCBCSSSSCCHHHHHHHHHHHTTSCCCCB
T ss_pred             C-CCcEEEEehhccCCCHHHHHHHHHHHHHhc---------CCCCEEEEEEeccCCCCCcchhhhcChhhhhcCCCcCCC
Confidence            3 89999999999887765  69999999999         77999998764321                       13


Q ss_pred             hhHHHHHHHHcCCEEEEEcC
Q 009871          466 EPSMLSAATQCGFRLVDKWP  485 (523)
Q Consensus       466 ~~~~~~~~~~~gf~~~~~~~  485 (523)
                      ..++.+.++++||++.+++.
T Consensus       316 ~~e~~~ll~~aGf~~~~~~~  335 (348)
T 3lst_A          316 AAELEPLFTAAGLRLDRVVG  335 (348)
T ss_dssp             HHHHHHHHHHTTEEEEEEEE
T ss_pred             HHHHHHHHHHCCCceEEEEE
Confidence            45677888999999999987

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=99.02  E-value=2.9e-10  Score=104.08  Aligned_cols=76  Identities=17%  Similarity=0.197  Sum_probs=63.7

Q ss_pred             CCCCeEEEECCCccccHHHHHhhC-CCCEEEEEeCCHHHHHHHHhccccCC--CcEEEEEeeccCCccCCCCCCCceeEE
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAY-PDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQISPSSIDIV  150 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~-~~~~v~gvD~S~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~V  150 (523)
                      .++.+|||+|||+|..+..+++.. ++.+|+|+|+|+.|++.|+++....+  .+++++++|+.++.   .+.+++||+|
T Consensus        21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~~~~~fD~v   97 (197)
T 3eey_A           21 KEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMD---KYIDCPVKAV   97 (197)
T ss_dssp             CTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGG---GTCCSCEEEE
T ss_pred             CCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHh---hhccCCceEE
Confidence            467899999999999999999884 56799999999999999999865432  57999999987652   1456899999


Q ss_pred             EE
Q 009871          151 TM  152 (523)
Q Consensus       151 ~~  152 (523)
                      ++
T Consensus        98 ~~   99 (197)
T 3eey_A           98 MF   99 (197)
T ss_dssp             EE
T ss_pred             EE
Confidence            98

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=99.02  E-value=3.8e-10  Score=113.98  Aligned_cols=73  Identities=16%  Similarity=0.226  Sum_probs=63.5

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM  152 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~  152 (523)
                      .++.+|||+|||+|.++..+++.  +.+|+|+|+|+.|++.|+++.......++++++|+.+.    +.++++||+|++
T Consensus       232 ~~~~~VLDlGcG~G~~~~~la~~--g~~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~----~~~~~~fD~Ii~  304 (381)
T 3dmg_A          232 VRGRQVLDLGAGYGALTLPLARM--GAEVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEA----LTEEARFDIIVT  304 (381)
T ss_dssp             TTTCEEEEETCTTSTTHHHHHHT--TCEEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTT----SCTTCCEEEEEE
T ss_pred             CCCCEEEEEeeeCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhc----cccCCCeEEEEE
Confidence            46789999999999999999988  56899999999999999998765555689999999876    444689999999

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=99.02  E-value=1.9e-10  Score=107.47  Aligned_cols=76  Identities=12%  Similarity=0.105  Sum_probs=61.7

Q ss_pred             CCCeEEEECCCccccHHHHHhhC-CCCEEEEEeCCHHHHHHHHhccccCC---CcEEEEEeeccCCccCCCCCCCceeEE
Q 009871           75 GRKDVLEVGCGAGNTIFPLIAAY-PDVFVYACDFSPRAVNLVMTHKDFTE---TRVSTFVCDLISDDLSRQISPSSIDIV  150 (523)
Q Consensus        75 ~~~~iLDiGcG~G~~~~~l~~~~-~~~~v~gvD~S~~~l~~a~~~~~~~~---~~v~~~~~d~~~~~~~~~~~~~~fD~V  150 (523)
                      ++.+|||||||+|..+..+++.. ++++|+|+|+|+.|++.|+++....+   .+++++++|+.+. ++ .+++++||+|
T Consensus        56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~-l~-~~~~~~fD~V  133 (221)
T 3dr5_A           56 GSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDV-MS-RLANDSYQLV  133 (221)
T ss_dssp             TCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHH-GG-GSCTTCEEEE
T ss_pred             CCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHH-HH-HhcCCCcCeE
Confidence            34599999999999999999985 47899999999999999999865332   4799999998753 11 2336899999


Q ss_pred             EE
Q 009871          151 TM  152 (523)
Q Consensus       151 ~~  152 (523)
                      ++
T Consensus       134 ~~  135 (221)
T 3dr5_A          134 FG  135 (221)
T ss_dssp             EE
T ss_pred             EE
Confidence            88

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=99.01  E-value=8.4e-10  Score=111.40  Aligned_cols=115  Identities=17%  Similarity=0.254  Sum_probs=82.6

Q ss_pred             CCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871           73 GAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM  152 (523)
Q Consensus        73 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~  152 (523)
                      ..+..+|||||||+|..+..+++++|+.+++++|+ +.|++.|+++     .+++++.+|+.+     +++++  |+|++
T Consensus       201 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~d~~~-----~~p~~--D~v~~  267 (368)
T 3reo_A          201 FEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPAF-----SGVEHLGGDMFD-----GVPKG--DAIFI  267 (368)
T ss_dssp             TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC-----TTEEEEECCTTT-----CCCCC--SEEEE
T ss_pred             ccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhhc-----CCCEEEecCCCC-----CCCCC--CEEEE
Confidence            34578999999999999999999999999999999 9999887654     579999999974     23443  99999


Q ss_pred             -------------------ccccccceeeecceEEecCCe---------------------EEEeeCHHHHHHHHHhCCC
Q 009871          153 -------------------ERLTGKDQKISENFYVRGDGT---------------------RAFYFSNDFLTSLFKENGF  192 (523)
Q Consensus       153 -------------------~~~~~~~~~~~~~~~~~~~g~---------------------~~~~~~~~~l~~ll~~~Gf  192 (523)
                                         .+.+++++++.-.....++..                     .-..++.+++.++|+++||
T Consensus       268 ~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~rt~~e~~~ll~~AGF  347 (368)
T 3reo_A          268 KWICHDWSDEHCLKLLKNCYAALPDHGKVIVAEYILPPSPDPSIATKVVIHTDALMLAYNPGGKERTEKEFQALAMASGF  347 (368)
T ss_dssp             ESCGGGBCHHHHHHHHHHHHHHSCTTCEEEEEECCCCSSCCCCHHHHHHHHHHHHHHHHSSBCCCCCHHHHHHHHHHTTC
T ss_pred             echhhcCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhhhHHHhhhHHHHhhcCCCccCCHHHHHHHHHHCCC
Confidence                               223344444321111111100                     0012478999999999999


Q ss_pred             cEEEEEeE
Q 009871          193 DVEELGLC  200 (523)
Q Consensus       193 ~~~~~~~~  200 (523)
                      ..+++...
T Consensus       348 ~~v~~~~~  355 (368)
T 3reo_A          348 RGFKVASC  355 (368)
T ss_dssp             CEEEEEEE
T ss_pred             eeeEEEEe
Confidence            99887654

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=99.01  E-value=1.5e-09  Score=111.51  Aligned_cols=143  Identities=16%  Similarity=0.126  Sum_probs=96.8

Q ss_pred             hhHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhc--CCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEee
Q 009871          318 ESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAG--SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRL  395 (523)
Q Consensus       318 ~~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~--~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l  395 (523)
                      +++.+++..+.    ..++.+|||+|||+|+.+..+|+.  +..+|+++|+++.+++.+++|++.+++.    ++.+...
T Consensus        92 ~ss~l~~~~L~----~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~----nv~v~~~  163 (456)
T 3m4x_A           92 PSAMIVGTAAA----AKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVS----NAIVTNH  163 (456)
T ss_dssp             TTTHHHHHHHC----CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCS----SEEEECC
T ss_pred             HHHHHHHHHcC----CCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC----ceEEEeC
Confidence            34566666663    346889999999999999988876  3468999999999999999999998874    3555433


Q ss_pred             ecCCCCcchhhhhhcCCCccEEEEccccCC---------------CCC-------hHHHHHHHHHHhhccCCCCCCCCCc
Q 009871          396 EWGNRDHIEAIKEENNEGFEVILGTDVSYI---------------PEA-------ILPLFATAKELTASSNKSLREDQQP  453 (523)
Q Consensus       396 dw~~~~~~~~~~~~~~~~fD~Ii~~d~~y~---------------~~~-------~~~l~~~l~~ll~~~~~~~~~~~~g  453 (523)
                      |.      ..+....+++||+|++......               .+.       ...++..+.++|         +|||
T Consensus       164 Da------~~l~~~~~~~FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~L---------kpGG  228 (456)
T 3m4x_A          164 AP------AELVPHFSGFFDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKML---------KNKG  228 (456)
T ss_dssp             CH------HHHHHHHTTCEEEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTE---------EEEE
T ss_pred             CH------HHhhhhccccCCEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhc---------CCCc
Confidence            22      1121223568999997432110               111       126777888888         6799


Q ss_pred             EEEEEEeecC--CChhHHHHHHHHcCCEEEEE
Q 009871          454 AFILCHIFRQ--VDEPSMLSAATQCGFRLVDK  483 (523)
Q Consensus       454 ~~~l~~~~r~--~~~~~~~~~~~~~gf~~~~~  483 (523)
                      .++.+...-.  ..+..+...+++++|++..+
T Consensus       229 ~LvYsTCs~~~eEne~vv~~~l~~~~~~l~~~  260 (456)
T 3m4x_A          229 QLIYSTCTFAPEENEEIISWLVENYPVTIEEI  260 (456)
T ss_dssp             EEEEEESCCCGGGTHHHHHHHHHHSSEEEECC
T ss_pred             EEEEEEeecccccCHHHHHHHHHhCCCEEEec
Confidence            9887654432  23334555667888877665

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=99.01  E-value=3.1e-09  Score=101.01  Aligned_cols=131  Identities=8%  Similarity=0.050  Sum_probs=86.7

Q ss_pred             CCCCeEEEECCCccHHHHHHHhcCCC-EEEEEcCChHHHHHHHHHHHhcCCCC----CCCceEEEeeecCCCCcchhhhh
Q 009871          334 VAGKKVLELGCGCGGICSMVAAGSAD-LVVATDGDSIALDLLAQNVTANLKPP----FLAKLITKRLEWGNRDHIEAIKE  408 (523)
Q Consensus       334 ~~~~~VLElG~G~G~l~~~~a~~~~~-~V~~~D~~~~~l~~~~~n~~~n~~~~----~~~~v~~~~ldw~~~~~~~~~~~  408 (523)
                      .++.+|||||||+|.++..++..++. +|+++|+++.+++.+++|+..+....    ...++.+...|..+.  +..  .
T Consensus        48 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~--l~~--~  123 (246)
T 2vdv_E           48 TKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKF--LPN--F  123 (246)
T ss_dssp             SCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSC--GGG--T
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHH--HHH--h
Confidence            36679999999999999988888754 89999999999999999998761110    113566666655432  111  1


Q ss_pred             hcCCCccEEEEcc--ccCCCC------ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhHHHHHHHHcCC
Q 009871          409 ENNEGFEVILGTD--VSYIPE------AILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGF  478 (523)
Q Consensus       409 ~~~~~fD~Ii~~d--~~y~~~------~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~~~~~~~~gf  478 (523)
                      +..+.+|.|+...  ..+...      ....+++.+.++|         +|||.+++...... -.+.+.+.+...|+
T Consensus       124 ~~~~~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~L---------kpgG~l~~~td~~~-~~~~~~~~~~~~~~  191 (246)
T 2vdv_E          124 FEKGQLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVL---------KEGGVVYTITDVKD-LHEWMVKHLEEHPL  191 (246)
T ss_dssp             SCTTCEEEEEEESCCCC------CSSCCCHHHHHHHHHHE---------EEEEEEEEEESCHH-HHHHHHHHHHHSTT
T ss_pred             ccccccCEEEEECCCcccccchhHHhhccHHHHHHHHHHc---------CCCCEEEEEeccHH-HHHHHHHHHHhCcC
Confidence            3456899998652  111100      1258999999999         67999988653321 01234455667775

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=99.01  E-value=2.5e-09  Score=100.75  Aligned_cols=132  Identities=11%  Similarity=-0.014  Sum_probs=86.7

Q ss_pred             CCCeEEEECCCccHHHHHHHhcC-CCEEEEEcCChHHHHHHHHHHHhcC--CCCCCCceEEEeeecCCCCcchhhhhhcC
Q 009871          335 AGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANL--KPPFLAKLITKRLEWGNRDHIEAIKEENN  411 (523)
Q Consensus       335 ~~~~VLElG~G~G~l~~~~a~~~-~~~V~~~D~~~~~l~~~~~n~~~n~--~~~~~~~v~~~~ldw~~~~~~~~~~~~~~  411 (523)
                      ++.+|||||||+|.++..+|... ...|+++|+++.|++.|++|+....  ......++.+...|..+.  +..  .+..
T Consensus        46 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~--l~~--~~~~  121 (235)
T 3ckk_A           46 AQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKH--LPN--FFYK  121 (235)
T ss_dssp             CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTC--HHH--HCCT
T ss_pred             CCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHh--hhh--hCCC
Confidence            45689999999999888888875 4589999999999999998876410  001124577766655431  110  1446


Q ss_pred             CCccEEEEccccCCC--------CChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhHHHHHHHHcC-CEE
Q 009871          412 EGFEVILGTDVSYIP--------EAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCG-FRL  480 (523)
Q Consensus       412 ~~fD~Ii~~d~~y~~--------~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~~~~~~~~g-f~~  480 (523)
                      ++||.|+..-.--+.        -....+++.+.++|         +|||.+++...... -...+.+.+.+.| |..
T Consensus       122 ~~~D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~L---------kpGG~l~~~td~~~-~~~~~~~~l~~~~~f~~  189 (235)
T 3ckk_A          122 GQLTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVL---------RVGGLVYTITDVLE-LHDWMCTHFEEHPLFER  189 (235)
T ss_dssp             TCEEEEEEESCC-----------CCCHHHHHHHHHHE---------EEEEEEEEEESCHH-HHHHHHHHHHTSTTEEE
T ss_pred             cCeeEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHC---------CCCCEEEEEeCCHH-HHHHHHHHHHHCCCccc
Confidence            799999865211110        01257999999999         67999998764421 1123456666776 443

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=99.00  E-value=4.9e-10  Score=104.99  Aligned_cols=129  Identities=12%  Similarity=0.123  Sum_probs=83.2

Q ss_pred             CCCeEEEECCCccHHHHHHHhc-CCCEEEEEcCC-hHHHHHH---HHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhh
Q 009871          335 AGKKVLELGCGCGGICSMVAAG-SADLVVATDGD-SIALDLL---AQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEE  409 (523)
Q Consensus       335 ~~~~VLElG~G~G~l~~~~a~~-~~~~V~~~D~~-~~~l~~~---~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~  409 (523)
                      ++.+|||||||+|.++..+++. ...+|+++|+| +.|++.|   ++++..++.    .++.+...+..+.   ..  .+
T Consensus        24 ~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~----~~v~~~~~d~~~l---~~--~~   94 (225)
T 3p2e_A           24 FDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGL----SNVVFVIAAAESL---PF--EL   94 (225)
T ss_dssp             CSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCC----SSEEEECCBTTBC---CG--GG
T ss_pred             CCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCC----CCeEEEEcCHHHh---hh--hc
Confidence            6679999999999888888764 34589999999 6777766   777666554    3466655554332   10  01


Q ss_pred             cCCCccEEEEccccCCC--------CChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecC--------------CChh
Q 009871          410 NNEGFEVILGTDVSYIP--------EAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ--------------VDEP  467 (523)
Q Consensus       410 ~~~~fD~Ii~~d~~y~~--------~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~--------------~~~~  467 (523)
                       ...+|.|.++   +..        .....+++.+.++|         +|||.++++.....              ....
T Consensus        95 -~d~v~~i~~~---~~~~~~~~~~~~~~~~~l~~~~r~L---------kpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~  161 (225)
T 3p2e_A           95 -KNIADSISIL---FPWGTLLEYVIKPNRDILSNVADLA---------KKEAHFEFVTTYSDSYEEAEIKKRGLPLLSKA  161 (225)
T ss_dssp             -TTCEEEEEEE---SCCHHHHHHHHTTCHHHHHHHHTTE---------EEEEEEEEEECCCC--------------CCHH
T ss_pred             -cCeEEEEEEe---CCCcHHhhhhhcchHHHHHHHHHhc---------CCCcEEEEEEeccccchhchhhhcCCCCCChh
Confidence             1344444443   321        12356889999999         67999988332110              1111


Q ss_pred             -----HHHHHHHHcCCEEEEEcC
Q 009871          468 -----SMLSAATQCGFRLVDKWP  485 (523)
Q Consensus       468 -----~~~~~~~~~gf~~~~~~~  485 (523)
                           ++.+.+++.||++..+..
T Consensus       162 ~~~~~el~~~l~~aGf~v~~~~~  184 (225)
T 3p2e_A          162 YFLSEQYKAELSNSGFRIDDVKE  184 (225)
T ss_dssp             HHHSHHHHHHHHHHTCEEEEEEE
T ss_pred             hcchHHHHHHHHHcCCCeeeeee
Confidence                 266778899999988754

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=99.00  E-value=1.1e-09  Score=103.33  Aligned_cols=105  Identities=12%  Similarity=0.052  Sum_probs=78.3

Q ss_pred             CCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcC
Q 009871          332 TIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENN  411 (523)
Q Consensus       332 ~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~  411 (523)
                      ...++.+|||+|||+|.++..++..++.+|+++|+++.+++.+++|+..++..    .+.+...|...  ...     ..
T Consensus        88 ~~~~~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~----~v~~~~~d~~~--~~~-----~~  156 (235)
T 1jg1_A           88 NLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVK----NVHVILGDGSK--GFP-----PK  156 (235)
T ss_dssp             TCCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCC----SEEEEESCGGG--CCG-----GG
T ss_pred             CCCCCCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCC----CcEEEECCccc--CCC-----CC
Confidence            34578899999999998888888875478999999999999999999987663    36666555411  111     12


Q ss_pred             CCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec
Q 009871          412 EGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFR  462 (523)
Q Consensus       412 ~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r  462 (523)
                      .+||+|+++.++.+..      +.+.++|         +|||.+++.....
T Consensus       157 ~~fD~Ii~~~~~~~~~------~~~~~~L---------~pgG~lvi~~~~~  192 (235)
T 1jg1_A          157 APYDVIIVTAGAPKIP------EPLIEQL---------KIGGKLIIPVGSY  192 (235)
T ss_dssp             CCEEEEEECSBBSSCC------HHHHHTE---------EEEEEEEEEECSS
T ss_pred             CCccEEEECCcHHHHH------HHHHHhc---------CCCcEEEEEEecC
Confidence            3599999987765432      4677888         6799999887653

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=99.00  E-value=3.2e-10  Score=113.57  Aligned_cols=73  Identities=18%  Similarity=0.161  Sum_probs=62.1

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC--CCcEEEEEeeccCCccCCCCCCCceeEEE
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISDDLSRQISPSSIDIVT  151 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~~~~~~~~~~fD~V~  151 (523)
                      .++.+|||||||+|.++..+++. +..+|+|+|+|+ |++.|+++....  ..+++++++|+.++    ++++++||+|+
T Consensus        65 ~~~~~VLDvGcG~G~~~~~la~~-g~~~v~gvD~s~-~l~~a~~~~~~~~~~~~v~~~~~d~~~~----~~~~~~fD~Ii  138 (349)
T 3q7e_A           65 FKDKVVLDVGSGTGILCMFAAKA-GARKVIGIECSS-ISDYAVKIVKANKLDHVVTIIKGKVEEV----ELPVEKVDIII  138 (349)
T ss_dssp             HTTCEEEEESCTTSHHHHHHHHT-TCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTC----CCSSSCEEEEE
T ss_pred             CCCCEEEEEeccchHHHHHHHHC-CCCEEEEECcHH-HHHHHHHHHHHcCCCCcEEEEECcHHHc----cCCCCceEEEE
Confidence            46789999999999999999988 345899999995 999999876543  24599999999987    56778999999


Q ss_pred             E
Q 009871          152 M  152 (523)
Q Consensus       152 ~  152 (523)
                      +
T Consensus       139 s  139 (349)
T 3q7e_A          139 S  139 (349)
T ss_dssp             E
T ss_pred             E
Confidence            8

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=99.00  E-value=4.1e-10  Score=111.08  Aligned_cols=124  Identities=10%  Similarity=0.064  Sum_probs=87.1

Q ss_pred             hhcCCCCCeEEEECCCccccHHHHHhhCC-CCEEEEEeCCHHHHHHHHhccccC-CCcEEEEEeeccCCccCCCCCCCce
Q 009871           70 YFSGAGRKDVLEVGCGAGNTIFPLIAAYP-DVFVYACDFSPRAVNLVMTHKDFT-ETRVSTFVCDLISDDLSRQISPSSI  147 (523)
Q Consensus        70 ~~~~~~~~~iLDiGcG~G~~~~~l~~~~~-~~~v~gvD~S~~~l~~a~~~~~~~-~~~v~~~~~d~~~~~~~~~~~~~~f  147 (523)
                      ++...++.+|||+|||+|..+..+++..+ +.+|+|+|+|+.|++.++++.... ..++.++++|+..+    +..+++|
T Consensus       113 ~l~~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~----~~~~~~f  188 (315)
T 1ixk_A          113 ALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHI----GELNVEF  188 (315)
T ss_dssp             HHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGG----GGGCCCE
T ss_pred             HhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhc----ccccccC
Confidence            34556788999999999999999998854 589999999999999999986433 24799999999865    2235689


Q ss_pred             eEEEE-cc------ccc-cc-----------------eee-ec-ceEEecCCeEEEee-------CHHHHHHHHHhCCCc
Q 009871          148 DIVTM-ER------LTG-KD-----------------QKI-SE-NFYVRGDGTRAFYF-------SNDFLTSLFKENGFD  193 (523)
Q Consensus       148 D~V~~-~~------~~~-~~-----------------~~~-~~-~~~~~~~g~~~~~~-------~~~~l~~ll~~~Gf~  193 (523)
                      |+|++ ..      +.. +.                 ..+ .. .-+++++|.+++..       ..+.+..++++.||+
T Consensus       189 D~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~~~~Ene~~v~~~l~~~~~~  268 (315)
T 1ixk_A          189 DKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPEENEFVIQWALDNFDVE  268 (315)
T ss_dssp             EEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGGGTHHHHHHHHHHSSEE
T ss_pred             CEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCCChHHhHHHHHHHHhcCCCE
Confidence            99998 11      100 00                 000 00 12578889887731       233467778888887


Q ss_pred             EEEE
Q 009871          194 VEEL  197 (523)
Q Consensus       194 ~~~~  197 (523)
                      .+.+
T Consensus       269 ~~~~  272 (315)
T 1ixk_A          269 LLPL  272 (315)
T ss_dssp             EECC
T ss_pred             EecC
Confidence            6544

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=98.99  E-value=7.7e-10  Score=103.63  Aligned_cols=76  Identities=17%  Similarity=0.059  Sum_probs=63.1

Q ss_pred             CCCCCeEEEECCCccccHHHHHhh-CCCCEEEEEeCCHHHHHHHHhccccC------CCcEEEEEeeccCCccCCCCCCC
Q 009871           73 GAGRKDVLEVGCGAGNTIFPLIAA-YPDVFVYACDFSPRAVNLVMTHKDFT------ETRVSTFVCDLISDDLSRQISPS  145 (523)
Q Consensus        73 ~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~v~gvD~S~~~l~~a~~~~~~~------~~~v~~~~~d~~~~~~~~~~~~~  145 (523)
                      ..++.+|||||||+|..+..+++. .+..+|+|+|+|+.|++.|+++....      ..++++.++|+...    +..++
T Consensus        75 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~----~~~~~  150 (226)
T 1i1n_A           75 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMG----YAEEA  150 (226)
T ss_dssp             SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGC----CGGGC
T ss_pred             CCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccC----cccCC
Confidence            357889999999999999999988 45578999999999999999876432      24799999999754    33467


Q ss_pred             ceeEEEE
Q 009871          146 SIDIVTM  152 (523)
Q Consensus       146 ~fD~V~~  152 (523)
                      +||+|++
T Consensus       151 ~fD~i~~  157 (226)
T 1i1n_A          151 PYDAIHV  157 (226)
T ss_dssp             CEEEEEE
T ss_pred             CcCEEEE
Confidence            8999988

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=98.99  E-value=4.4e-10  Score=106.33  Aligned_cols=110  Identities=11%  Similarity=0.041  Sum_probs=81.8

Q ss_pred             CCCCeEEEECCCccHHHHHHHhcC--CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhh----
Q 009871          334 VAGKKVLELGCGCGGICSMVAAGS--ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIK----  407 (523)
Q Consensus       334 ~~~~~VLElG~G~G~l~~~~a~~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~----  407 (523)
                      .++.+|||||||+|..+..++...  ..+|+++|+++.+++.+++|+..++..   .++.+...|..+.  ...+.    
T Consensus        59 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~---~~v~~~~~d~~~~--~~~~~~~~~  133 (239)
T 2hnk_A           59 SGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLE---NKIFLKLGSALET--LQVLIDSKS  133 (239)
T ss_dssp             HTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCG---GGEEEEESCHHHH--HHHHHHCSS
T ss_pred             hCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC---CCEEEEECCHHHH--HHHHHhhcc
Confidence            367899999999998888888774  469999999999999999999987764   3566665443211  11110    


Q ss_pred             ------hhcC--CCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEe
Q 009871          408 ------EENN--EGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHI  460 (523)
Q Consensus       408 ------~~~~--~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~  460 (523)
                            .++.  ++||+|++.   ........+++.+.++|         +|||.+++...
T Consensus       134 ~~~~~~~f~~~~~~fD~I~~~---~~~~~~~~~l~~~~~~L---------~pgG~lv~~~~  182 (239)
T 2hnk_A          134 APSWASDFAFGPSSIDLFFLD---ADKENYPNYYPLILKLL---------KPGGLLIADNV  182 (239)
T ss_dssp             CCGGGTTTCCSTTCEEEEEEC---SCGGGHHHHHHHHHHHE---------EEEEEEEEECS
T ss_pred             cccccccccCCCCCcCEEEEe---CCHHHHHHHHHHHHHHc---------CCCeEEEEEcc
Confidence                  0111  689999986   44566778999999999         67999998653

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=98.99  E-value=1.2e-10  Score=110.33  Aligned_cols=108  Identities=17%  Similarity=0.098  Sum_probs=82.2

Q ss_pred             CCCCeEEEECCCccHHHHHHHhcC--CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhh--
Q 009871          334 VAGKKVLELGCGCGGICSMVAAGS--ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEE--  409 (523)
Q Consensus       334 ~~~~~VLElG~G~G~l~~~~a~~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~--  409 (523)
                      .++++|||||||+|..+..++...  ..+|+++|+++.+++.+++|+..+++.   .++.+...|..+     .+..+  
T Consensus        59 ~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~---~~i~~~~gda~~-----~l~~~~~  130 (242)
T 3r3h_A           59 TRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQE---HKIKLRLGPALD-----TLHSLLN  130 (242)
T ss_dssp             HTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCT---TTEEEEESCHHH-----HHHHHHH
T ss_pred             cCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC---CcEEEEEcCHHH-----HHHHHhh
Confidence            356799999999998888888753  469999999999999999999998775   467776544321     11111  


Q ss_pred             --cCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee
Q 009871          410 --NNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIF  461 (523)
Q Consensus       410 --~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~  461 (523)
                        ..++||+|+...   .......+++.+.++|         +|||.+++....
T Consensus       131 ~~~~~~fD~V~~d~---~~~~~~~~l~~~~~~L---------kpGG~lv~d~~~  172 (242)
T 3r3h_A          131 EGGEHQFDFIFIDA---DKTNYLNYYELALKLV---------TPKGLIAIDNIF  172 (242)
T ss_dssp             HHCSSCEEEEEEES---CGGGHHHHHHHHHHHE---------EEEEEEEEECSS
T ss_pred             ccCCCCEeEEEEcC---ChHHhHHHHHHHHHhc---------CCCeEEEEECCc
Confidence              146899999852   3566788899999999         679999886554

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=98.99  E-value=8.2e-10  Score=102.22  Aligned_cols=104  Identities=11%  Similarity=0.000  Sum_probs=79.4

Q ss_pred             CCCeEEEECCCccHHHHHHHhcC--CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCC
Q 009871          335 AGKKVLELGCGCGGICSMVAAGS--ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNE  412 (523)
Q Consensus       335 ~~~~VLElG~G~G~l~~~~a~~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~  412 (523)
                      ++++|||+|||+|..+..++...  ..+|+++|+++.+++.+++|+..++..   .++.+...|..+.     + +..++
T Consensus        56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~---~~v~~~~~d~~~~-----~-~~~~~  126 (210)
T 3c3p_A           56 QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLI---DRVELQVGDPLGI-----A-AGQRD  126 (210)
T ss_dssp             CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGG---GGEEEEESCHHHH-----H-TTCCS
T ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCC---ceEEEEEecHHHH-----h-ccCCC
Confidence            56799999999998888887763  469999999999999999999887663   4566665443211     1 11235


Q ss_pred             CccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEe
Q 009871          413 GFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHI  460 (523)
Q Consensus       413 ~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~  460 (523)
                       ||+|++.   ........+++.+.++|         +|||.+++...
T Consensus       127 -fD~v~~~---~~~~~~~~~l~~~~~~L---------kpgG~lv~~~~  161 (210)
T 3c3p_A          127 -IDILFMD---CDVFNGADVLERMNRCL---------AKNALLIAVNA  161 (210)
T ss_dssp             -EEEEEEE---TTTSCHHHHHHHHGGGE---------EEEEEEEEESS
T ss_pred             -CCEEEEc---CChhhhHHHHHHHHHhc---------CCCeEEEEECc
Confidence             9999986   34567889999999999         67999887543

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=98.99  E-value=1.3e-09  Score=109.91  Aligned_cols=115  Identities=17%  Similarity=0.178  Sum_probs=82.8

Q ss_pred             CCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871           73 GAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM  152 (523)
Q Consensus        73 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~  152 (523)
                      ..+..+|||||||+|..+..+++++|+.+++++|+ +.|++.|++.     .+++++.+|+.+     +++.+  |+|++
T Consensus       199 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~-----~~p~~--D~v~~  265 (364)
T 3p9c_A          199 FEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQF-----PGVTHVGGDMFK-----EVPSG--DTILM  265 (364)
T ss_dssp             TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC-----TTEEEEECCTTT-----CCCCC--SEEEE
T ss_pred             ccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhhc-----CCeEEEeCCcCC-----CCCCC--CEEEe
Confidence            35678999999999999999999999999999999 9998877653     579999999975     23443  99999


Q ss_pred             -------------------ccccccceeeecceEEecCC-e---------------E-----EEeeCHHHHHHHHHhCCC
Q 009871          153 -------------------ERLTGKDQKISENFYVRGDG-T---------------R-----AFYFSNDFLTSLFKENGF  192 (523)
Q Consensus       153 -------------------~~~~~~~~~~~~~~~~~~~g-~---------------~-----~~~~~~~~l~~ll~~~Gf  192 (523)
                                         .+.+++++++.-.....++. .               .     -..++.+++.++|+++||
T Consensus       266 ~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~AGF  345 (364)
T 3p9c_A          266 KWILHDWSDQHCATLLKNCYDALPAHGKVVLVQCILPVNPEANPSSQGVFHVDMIMLAHNPGGRERYEREFQALARGAGF  345 (364)
T ss_dssp             ESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSCCSSHHHHHHHHHHHHHHHHCSSCCCCBHHHHHHHHHHTTC
T ss_pred             hHHhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCcchhhhhHHHhHHHHHhcccCCccCCHHHHHHHHHHCCC
Confidence                               22234444432111111110 0               0     012478999999999999


Q ss_pred             cEEEEEeE
Q 009871          193 DVEELGLC  200 (523)
Q Consensus       193 ~~~~~~~~  200 (523)
                      +.+++...
T Consensus       346 ~~v~~~~~  353 (364)
T 3p9c_A          346 TGVKSTYI  353 (364)
T ss_dssp             CEEEEEEE
T ss_pred             ceEEEEEc
Confidence            99887654

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=98.98  E-value=1.8e-09  Score=101.19  Aligned_cols=111  Identities=12%  Similarity=0.108  Sum_probs=80.0

Q ss_pred             CCCCCeEEEECCCccHHHHHHHhcCC------CEEEEEcCChHHHHHHHHHHHhcCCC-CCCCceEEEeeecCCCCcchh
Q 009871          333 IVAGKKVLELGCGCGGICSMVAAGSA------DLVVATDGDSIALDLLAQNVTANLKP-PFLAKLITKRLEWGNRDHIEA  405 (523)
Q Consensus       333 ~~~~~~VLElG~G~G~l~~~~a~~~~------~~V~~~D~~~~~l~~~~~n~~~n~~~-~~~~~v~~~~ldw~~~~~~~~  405 (523)
                      ..++.+|||+|||+|.++..++....      .+|+++|+++.+++.+++|+..++.. ....++.+...|..+... ..
T Consensus        78 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~  156 (227)
T 2pbf_A           78 LKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNE-EE  156 (227)
T ss_dssp             SCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCH-HH
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhccc-cc
Confidence            34788999999999988888887653      48999999999999999999887620 001356666665543210 00


Q ss_pred             hhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee
Q 009871          406 IKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIF  461 (523)
Q Consensus       406 ~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~  461 (523)
                        .....+||+|++...+.+      +++.+.++|         +|||.+++....
T Consensus       157 --~~~~~~fD~I~~~~~~~~------~~~~~~~~L---------kpgG~lv~~~~~  195 (227)
T 2pbf_A          157 --KKELGLFDAIHVGASASE------LPEILVDLL---------AENGKLIIPIEE  195 (227)
T ss_dssp             --HHHHCCEEEEEECSBBSS------CCHHHHHHE---------EEEEEEEEEEEE
T ss_pred             --CccCCCcCEEEECCchHH------HHHHHHHhc---------CCCcEEEEEEcc
Confidence              012358999999876653      357888899         679999988765

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=98.98  E-value=2.9e-09  Score=106.83  Aligned_cols=121  Identities=17%  Similarity=0.154  Sum_probs=85.2

Q ss_pred             cCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhcccc-CCCcEEEEEeeccCCccCCCCCCCceeEE
Q 009871           72 SGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDF-TETRVSTFVCDLISDDLSRQISPSSIDIV  150 (523)
Q Consensus        72 ~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~-~~~~v~~~~~d~~~~~~~~~~~~~~fD~V  150 (523)
                      +.....+|||||||+|..+..+++++|+.+++..|. |.+++.|+++... ...+++++.+|+...    +.  ..+|+|
T Consensus       176 ~~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~~~~rv~~~~gD~~~~----~~--~~~D~~  248 (353)
T 4a6d_A          176 DLSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQEEEQIDFQEGDFFKD----PL--PEADLY  248 (353)
T ss_dssp             CGGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC--CCSEEEEESCTTTS----CC--CCCSEE
T ss_pred             CcccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhcccCceeeecCccccC----CC--CCceEE
Confidence            335667999999999999999999999999999997 8899999987643 347899999999754    33  347999


Q ss_pred             EE-------------------ccccccceeeecce-EEecCCeEE----------------EeeCHHHHHHHHHhCCCcE
Q 009871          151 TM-------------------ERLTGKDQKISENF-YVRGDGTRA----------------FYFSNDFLTSLFKENGFDV  194 (523)
Q Consensus       151 ~~-------------------~~~~~~~~~~~~~~-~~~~~g~~~----------------~~~~~~~l~~ll~~~Gf~~  194 (523)
                      ++                   .+.+++++++.-.. ++.+++...                .-+|.+++.++|+++||+.
T Consensus       249 ~~~~vlh~~~d~~~~~iL~~~~~al~pgg~lli~e~~~~~~~~~~~~~~~~dl~ml~~~~g~ert~~e~~~ll~~AGf~~  328 (353)
T 4a6d_A          249 ILARVLHDWADGKCSHLLERIYHTCKPGGGILVIESLLDEDRRGPLLTQLYSLNMLVQTEGQERTPTHYHMLLSSAGFRD  328 (353)
T ss_dssp             EEESSGGGSCHHHHHHHHHHHHHHCCTTCEEEEEECCCCTTSCCCHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHHTCEE
T ss_pred             EeeeecccCCHHHHHHHHHHHHhhCCCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHCCCce
Confidence            99                   11223333322110 111111100                0147899999999999998


Q ss_pred             EEEEe
Q 009871          195 EELGL  199 (523)
Q Consensus       195 ~~~~~  199 (523)
                      +++..
T Consensus       329 v~v~~  333 (353)
T 4a6d_A          329 FQFKK  333 (353)
T ss_dssp             EEEEC
T ss_pred             EEEEE
Confidence            87753

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=98.98  E-value=5.3e-10  Score=100.42  Aligned_cols=75  Identities=12%  Similarity=0.149  Sum_probs=61.0

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCC--CcEEEEEeeccCCccCCCCCCCceeEEE
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQISPSSIDIVT  151 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~V~  151 (523)
                      .++.+|||+|||+|..+..+++. +..+|+|+|+|+.|++.|+++....+  .+++++++|+.+. +  +..+++||+|+
T Consensus        30 ~~~~~vLDlGcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~--~~~~~~fD~i~  105 (177)
T 2esr_A           30 FNGGRVLDLFAGSGGLAIEAVSR-GMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERA-I--DCLTGRFDLVF  105 (177)
T ss_dssp             CCSCEEEEETCTTCHHHHHHHHT-TCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHH-H--HHBCSCEEEEE
T ss_pred             cCCCeEEEeCCCCCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHh-H--HhhcCCCCEEE
Confidence            56789999999999999999887 34689999999999999999875443  4699999998752 1  22346799998


Q ss_pred             E
Q 009871          152 M  152 (523)
Q Consensus       152 ~  152 (523)
                      +
T Consensus       106 ~  106 (177)
T 2esr_A          106 L  106 (177)
T ss_dssp             E
T ss_pred             E
Confidence            8

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=98.98  E-value=7.6e-10  Score=109.40  Aligned_cols=84  Identities=14%  Similarity=0.116  Sum_probs=67.4

Q ss_pred             HHHhhhhcCCCCCeEEEECCCccccHHHHHhhCC-CCEEEEEeCCHHHHHHHHhccccC-CCcEEEEEeeccCCccCCCC
Q 009871           65 KEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYP-DVFVYACDFSPRAVNLVMTHKDFT-ETRVSTFVCDLISDDLSRQI  142 (523)
Q Consensus        65 ~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~-~~~v~gvD~S~~~l~~a~~~~~~~-~~~v~~~~~d~~~~~~~~~~  142 (523)
                      ..+.+.+...++.+|||||||+|.++..+++.++ +.+|+|+|+|+.|++.|+++.... ..++++.++|+.+.    +.
T Consensus        65 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~----~~  140 (317)
T 1dl5_A           65 ALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYG----VP  140 (317)
T ss_dssp             HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGC----CG
T ss_pred             HHHHHhcCCCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhc----cc
Confidence            3334445556788999999999999999999865 478999999999999999976433 24699999999864    23


Q ss_pred             CCCceeEEEE
Q 009871          143 SPSSIDIVTM  152 (523)
Q Consensus       143 ~~~~fD~V~~  152 (523)
                      ++++||+|++
T Consensus       141 ~~~~fD~Iv~  150 (317)
T 1dl5_A          141 EFSPYDVIFV  150 (317)
T ss_dssp             GGCCEEEEEE
T ss_pred             cCCCeEEEEE
Confidence            4578999998

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=98.98  E-value=7e-10  Score=100.88  Aligned_cols=76  Identities=12%  Similarity=0.074  Sum_probs=61.5

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCC-CcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQISPSSIDIVTM  152 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~V~~  152 (523)
                      .++.+|||+|||+|.++..+++.. ..+|+|+|+|+.|++.|+++....+ .+++++++|+.+..  ..+++++||+|++
T Consensus        43 ~~~~~vLDlgcG~G~~~~~~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--~~~~~~~fD~i~~  119 (189)
T 3p9n_A           43 LTGLAVLDLYAGSGALGLEALSRG-AASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVV--AAGTTSPVDLVLA  119 (189)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHTT-CSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHH--HHCCSSCCSEEEE
T ss_pred             CCCCEEEEeCCCcCHHHHHHHHCC-CCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHH--hhccCCCccEEEE
Confidence            467899999999999999887763 4579999999999999999865433 57999999997541  1134679999998

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=98.98  E-value=1.7e-09  Score=101.49  Aligned_cols=108  Identities=16%  Similarity=0.083  Sum_probs=81.4

Q ss_pred             CCCCeEEEECCCccHHHHHHHhcC--CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcC
Q 009871          334 VAGKKVLELGCGCGGICSMVAAGS--ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENN  411 (523)
Q Consensus       334 ~~~~~VLElG~G~G~l~~~~a~~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~  411 (523)
                      .++++|||+|||+|..+..++...  ..+|+++|+++.+++.+++|+..++..   .++.+...|..+     .+..+..
T Consensus        68 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~---~~i~~~~~d~~~-----~~~~~~~  139 (229)
T 2avd_A           68 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAE---HKIDLRLKPALE-----TLDELLA  139 (229)
T ss_dssp             TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCT---TTEEEEESCHHH-----HHHHHHH
T ss_pred             cCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCC---CeEEEEEcCHHH-----HHHHHHh
Confidence            367899999999998888888763  469999999999999999999988764   456666544321     1111211


Q ss_pred             ----CCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee
Q 009871          412 ----EGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIF  461 (523)
Q Consensus       412 ----~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~  461 (523)
                          ++||+|++..   .......+++.+.++|         +|||.+++....
T Consensus       140 ~~~~~~~D~v~~d~---~~~~~~~~l~~~~~~L---------~pgG~lv~~~~~  181 (229)
T 2avd_A          140 AGEAGTFDVAVVDA---DKENCSAYYERCLQLL---------RPGGILAVLRVL  181 (229)
T ss_dssp             TTCTTCEEEEEECS---CSTTHHHHHHHHHHHE---------EEEEEEEEECCS
T ss_pred             cCCCCCccEEEECC---CHHHHHHHHHHHHHHc---------CCCeEEEEECCC
Confidence                6899999853   2556788999999999         679999886544

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=98.97  E-value=8.3e-10  Score=102.50  Aligned_cols=81  Identities=16%  Similarity=0.052  Sum_probs=64.3

Q ss_pred             hhhhcCCCCCeEEEECCCccccHHHHHhhC-CCCEEEEEeCCHHHHHHHHhcccc-CCCcEEEEEeeccCCccCCCCCCC
Q 009871           68 GRYFSGAGRKDVLEVGCGAGNTIFPLIAAY-PDVFVYACDFSPRAVNLVMTHKDF-TETRVSTFVCDLISDDLSRQISPS  145 (523)
Q Consensus        68 ~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~v~gvD~S~~~l~~a~~~~~~-~~~~v~~~~~d~~~~~~~~~~~~~  145 (523)
                      .+.+...++.+|||||||+|..+..+++.. +..+|+|+|+|+.+++.|+++... ...++++.++|+...    ...++
T Consensus        70 ~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~----~~~~~  145 (215)
T 2yxe_A           70 CELLDLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLG----YEPLA  145 (215)
T ss_dssp             HHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGC----CGGGC
T ss_pred             HHhhCCCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccC----CCCCC
Confidence            334455678899999999999999999885 557899999999999999987643 224699999998542    12257


Q ss_pred             ceeEEEE
Q 009871          146 SIDIVTM  152 (523)
Q Consensus       146 ~fD~V~~  152 (523)
                      +||+|++
T Consensus       146 ~fD~v~~  152 (215)
T 2yxe_A          146 PYDRIYT  152 (215)
T ss_dssp             CEEEEEE
T ss_pred             CeeEEEE
Confidence            8999998

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=98.97  E-value=1e-09  Score=106.52  Aligned_cols=90  Identities=16%  Similarity=0.158  Sum_probs=70.5

Q ss_pred             ccccchhhhHHHHhhhhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeecc
Q 009871           55 RFFKDRHYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLI  134 (523)
Q Consensus        55 ~f~~~~~~l~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~  134 (523)
                      +|..+...+ ..+-+.+...++.+|||||||+|.++..|++.  +.+|+|||+++.|++.++++.. ...+++++++|+.
T Consensus        31 nfL~d~~i~-~~Iv~~l~~~~~~~VLEIG~G~G~lT~~La~~--~~~V~aVEid~~li~~a~~~~~-~~~~v~vi~gD~l  106 (295)
T 3gru_A           31 CFLIDKNFV-NKAVESANLTKDDVVLEIGLGKGILTEELAKN--AKKVYVIEIDKSLEPYANKLKE-LYNNIEIIWGDAL  106 (295)
T ss_dssp             CEECCHHHH-HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCGGGHHHHHHHHH-HCSSEEEEESCTT
T ss_pred             cccCCHHHH-HHHHHhcCCCCcCEEEEECCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhc-cCCCeEEEECchh
Confidence            354444443 33334455567889999999999999999998  5679999999999999998764 3467999999999


Q ss_pred             CCccCCCCCCCceeEEEE
Q 009871          135 SDDLSRQISPSSIDIVTM  152 (523)
Q Consensus       135 ~~~~~~~~~~~~fD~V~~  152 (523)
                      +.    ++++.+||+|++
T Consensus       107 ~~----~~~~~~fD~Iv~  120 (295)
T 3gru_A          107 KV----DLNKLDFNKVVA  120 (295)
T ss_dssp             TS----CGGGSCCSEEEE
T ss_pred             hC----CcccCCccEEEE
Confidence            87    455567999977

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=98.97  E-value=7.2e-10  Score=106.89  Aligned_cols=117  Identities=13%  Similarity=0.195  Sum_probs=74.0

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEE-EEeeccCCccCCCCCCCceeEEEE
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVST-FVCDLISDDLSRQISPSSIDIVTM  152 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~-~~~d~~~~~~~~~~~~~~fD~V~~  152 (523)
                      .++.+|||||||||.++..|++.. ..+|+|||+|+.|++.+.++.    .++.. ...|+..+... .++..+||+|++
T Consensus        84 ~~g~~vLDiGcGTG~~t~~L~~~g-a~~V~aVDvs~~mL~~a~r~~----~rv~~~~~~ni~~l~~~-~l~~~~fD~v~~  157 (291)
T 3hp7_A           84 VEDMITIDIGASTGGFTDVMLQNG-AKLVYAVDVGTNQLVWKLRQD----DRVRSMEQYNFRYAEPV-DFTEGLPSFASI  157 (291)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHTT-CSEEEEECSSSSCSCHHHHTC----TTEEEECSCCGGGCCGG-GCTTCCCSEEEE
T ss_pred             ccccEEEecCCCccHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhC----cccceecccCceecchh-hCCCCCCCEEEE
Confidence            467799999999999999998873 458999999999999855432    23322 23445433211 234456999998


Q ss_pred             --------------ccccccceeeecceEEec-----------CCeE----EEeeCHHHHHHHHHhCCCcEEEEE
Q 009871          153 --------------ERLTGKDQKISENFYVRG-----------DGTR----AFYFSNDFLTSLFKENGFDVEELG  198 (523)
Q Consensus       153 --------------~~~~~~~~~~~~~~~~~~-----------~g~~----~~~~~~~~l~~ll~~~Gf~~~~~~  198 (523)
                                    .+++++++.+.-  ..+|           .|..    .+....+++..++.++||.+..+.
T Consensus       158 d~sf~sl~~vL~e~~rvLkpGG~lv~--lvkPqfe~~~~~~~~~G~vrd~~~~~~~~~~v~~~~~~~Gf~v~~~~  230 (291)
T 3hp7_A          158 DVSFISLNLILPALAKILVDGGQVVA--LVKPQFEAGREQIGKNGIVRESSIHEKVLETVTAFAVDYGFSVKGLD  230 (291)
T ss_dssp             CCSSSCGGGTHHHHHHHSCTTCEEEE--EECGGGTSCGGGCC-CCCCCCHHHHHHHHHHHHHHHHHTTEEEEEEE
T ss_pred             EeeHhhHHHHHHHHHHHcCcCCEEEE--EECcccccChhhcCCCCccCCHHHHHHHHHHHHHHHHHCCCEEEEEE
Confidence                          333444444321  1111           1110    012356788999999999976654

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=98.97  E-value=2.7e-09  Score=109.75  Aligned_cols=143  Identities=24%  Similarity=0.205  Sum_probs=94.0

Q ss_pred             hhHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcC--CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEee
Q 009871          318 ESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGS--ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRL  395 (523)
Q Consensus       318 ~~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l  395 (523)
                      +++.+++.++.    ..++.+|||+|||+|+.+..+|+..  ..+|+++|+++.+++.+++|++.+++.     +.+...
T Consensus        88 ~ss~l~a~~L~----~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~-----v~~~~~  158 (464)
T 3m6w_A           88 PSAQAVGVLLD----PKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP-----LAVTQA  158 (464)
T ss_dssp             TTTHHHHHHHC----CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC-----CEEECS
T ss_pred             HHHHHHHHhcC----cCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe-----EEEEEC
Confidence            34555666653    3478899999999999999988763  358999999999999999999998763     444433


Q ss_pred             ecCCCCcchhhhhhcCCCccEEEEccc------cCC-CC--------Ch-------HHHHHHHHHHhhccCCCCCCCCCc
Q 009871          396 EWGNRDHIEAIKEENNEGFEVILGTDV------SYI-PE--------AI-------LPLFATAKELTASSNKSLREDQQP  453 (523)
Q Consensus       396 dw~~~~~~~~~~~~~~~~fD~Ii~~d~------~y~-~~--------~~-------~~l~~~l~~ll~~~~~~~~~~~~g  453 (523)
                      |.      ..+.....++||+|++...      +.. ++        .+       ..+++.+.++|         +|||
T Consensus       159 Da------~~l~~~~~~~FD~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~L---------kpGG  223 (464)
T 3m6w_A          159 PP------RALAEAFGTYFHRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLL---------GPGG  223 (464)
T ss_dssp             CH------HHHHHHHCSCEEEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTE---------EEEE
T ss_pred             CH------HHhhhhccccCCEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhc---------CCCc
Confidence            22      1122223568999996321      111 11        11       56777777888         6799


Q ss_pred             EEEEEEeecC--CChhHHHHHHHHc-CCEEEEEc
Q 009871          454 AFILCHIFRQ--VDEPSMLSAATQC-GFRLVDKW  484 (523)
Q Consensus       454 ~~~l~~~~r~--~~~~~~~~~~~~~-gf~~~~~~  484 (523)
                      .++.+...-.  ..+..+...++++ +|++..+.
T Consensus       224 ~LvysTCs~~~eEne~vv~~~l~~~~~~~l~~~~  257 (464)
T 3m6w_A          224 VLVYSTCTFAPEENEGVVAHFLKAHPEFRLEDAR  257 (464)
T ss_dssp             EEEEEESCCCGGGTHHHHHHHHHHCTTEEEECCC
T ss_pred             EEEEEeccCchhcCHHHHHHHHHHCCCcEEEecc
Confidence            9987654422  2233344445566 68877653

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=98.97  E-value=4.9e-09  Score=101.23  Aligned_cols=131  Identities=12%  Similarity=0.097  Sum_probs=88.6

Q ss_pred             CCCeEEEECCCccHHHHHHHhc-CCCEEEEEcCChHHHHHHHHHHHh--cCCCCCCCceEEEeeecCCCCcchhhhhhcC
Q 009871          335 AGKKVLELGCGCGGICSMVAAG-SADLVVATDGDSIALDLLAQNVTA--NLKPPFLAKLITKRLEWGNRDHIEAIKEENN  411 (523)
Q Consensus       335 ~~~~VLElG~G~G~l~~~~a~~-~~~~V~~~D~~~~~l~~~~~n~~~--n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~  411 (523)
                      .+++|||||||+|.++..+++. +..+|+++|+|+.+++.+++|+..  ++.  ...++.+...|..     .-+ ....
T Consensus        75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~--~~~rv~v~~~D~~-----~~l-~~~~  146 (275)
T 1iy9_A           75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKL--DDPRVDVQVDDGF-----MHI-AKSE  146 (275)
T ss_dssp             SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTT--TSTTEEEEESCSH-----HHH-HTCC
T ss_pred             CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhcccc--CCCceEEEECcHH-----HHH-hhCC
Confidence            5689999999999888888887 567999999999999999998754  222  2246766654321     111 1124


Q ss_pred             CCccEEEEccccCCCC-----ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCCh---hHHHHHHHHcCCEEEEE
Q 009871          412 EGFEVILGTDVSYIPE-----AILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDE---PSMLSAATQCGFRLVDK  483 (523)
Q Consensus       412 ~~fD~Ii~~d~~y~~~-----~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~---~~~~~~~~~~gf~~~~~  483 (523)
                      ++||+|++ |..+...     ....+++.+.++|         +|+|.+++.........   ..+.+.+++. |.....
T Consensus       147 ~~fD~Ii~-d~~~~~~~~~~l~~~~~~~~~~~~L---------~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~-F~~v~~  215 (275)
T 1iy9_A          147 NQYDVIMV-DSTEPVGPAVNLFTKGFYAGIAKAL---------KEDGIFVAQTDNPWFTPELITNVQRDVKEI-FPITKL  215 (275)
T ss_dssp             SCEEEEEE-SCSSCCSCCCCCSTTHHHHHHHHHE---------EEEEEEEEECCCTTTCHHHHHHHHHHHHTT-CSEEEE
T ss_pred             CCeeEEEE-CCCCCCCcchhhhHHHHHHHHHHhc---------CCCcEEEEEcCCccccHHHHHHHHHHHHHh-CCCeEE
Confidence            68999998 5544211     1367999999999         67999988654322222   3455666666 554444


Q ss_pred             c
Q 009871          484 W  484 (523)
Q Consensus       484 ~  484 (523)
                      +
T Consensus       216 ~  216 (275)
T 1iy9_A          216 Y  216 (275)
T ss_dssp             E
T ss_pred             E
Confidence            4

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=98.96  E-value=2e-09  Score=100.72  Aligned_cols=107  Identities=14%  Similarity=0.035  Sum_probs=78.5

Q ss_pred             CCCCCeEEEECCCccHHHHHHHhc-CC-CEEEEEcCChHHHHHHHHHHHhcCCCC-CCCceEEEeeecCCCCcchhhhhh
Q 009871          333 IVAGKKVLELGCGCGGICSMVAAG-SA-DLVVATDGDSIALDLLAQNVTANLKPP-FLAKLITKRLEWGNRDHIEAIKEE  409 (523)
Q Consensus       333 ~~~~~~VLElG~G~G~l~~~~a~~-~~-~~V~~~D~~~~~l~~~~~n~~~n~~~~-~~~~v~~~~ldw~~~~~~~~~~~~  409 (523)
                      ..++.+|||+|||+|.++..++.. +. .+|+++|+++.+++.+++|+..++... ...++.+...|.....       .
T Consensus        75 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~-------~  147 (226)
T 1i1n_A           75 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGY-------A  147 (226)
T ss_dssp             SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCC-------G
T ss_pred             CCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCc-------c
Confidence            357889999999999888888876 33 489999999999999999998765300 0135666665554221       1


Q ss_pred             cCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee
Q 009871          410 NNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIF  461 (523)
Q Consensus       410 ~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~  461 (523)
                      ...+||+|++..++.      .+++.+.++|         +|||.++++...
T Consensus       148 ~~~~fD~i~~~~~~~------~~~~~~~~~L---------kpgG~lv~~~~~  184 (226)
T 1i1n_A          148 EEAPYDAIHVGAAAP------VVPQALIDQL---------KPGGRLILPVGP  184 (226)
T ss_dssp             GGCCEEEEEECSBBS------SCCHHHHHTE---------EEEEEEEEEESC
T ss_pred             cCCCcCEEEECCchH------HHHHHHHHhc---------CCCcEEEEEEec
Confidence            245899999886653      2456788899         679999988755

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=98.96  E-value=7.2e-10  Score=110.68  Aligned_cols=79  Identities=11%  Similarity=0.186  Sum_probs=63.1

Q ss_pred             hhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccc-------c---CCCcEEEEEeeccCCccC
Q 009871           70 YFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKD-------F---TETRVSTFVCDLISDDLS  139 (523)
Q Consensus        70 ~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~-------~---~~~~v~~~~~d~~~~~~~  139 (523)
                      .+...++.+|||||||+|.++..++...+..+|+|||+|+.|++.|+++..       .   ...+++++++|+.++   
T Consensus       168 ~l~l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~~~l---  244 (438)
T 3uwp_A          168 EIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSE---  244 (438)
T ss_dssp             HHCCCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCTTSH---
T ss_pred             hcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECcccCC---
Confidence            345578899999999999999999987655569999999999999987431       1   136899999999876   


Q ss_pred             CCCCC--CceeEEEE
Q 009871          140 RQISP--SSIDIVTM  152 (523)
Q Consensus       140 ~~~~~--~~fD~V~~  152 (523)
                       ++++  ..||+|++
T Consensus       245 -p~~d~~~~aDVVf~  258 (438)
T 3uwp_A          245 -EWRERIANTSVIFV  258 (438)
T ss_dssp             -HHHHHHHTCSEEEE
T ss_pred             -ccccccCCccEEEE
Confidence             3333  47999998

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=98.96  E-value=2.2e-09  Score=102.16  Aligned_cols=91  Identities=14%  Similarity=0.212  Sum_probs=68.7

Q ss_pred             cccchhhhHHHHhhhhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccC
Q 009871           56 FFKDRHYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLIS  135 (523)
Q Consensus        56 f~~~~~~l~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~  135 (523)
                      |..+...+ ..+-+.+...++.+|||||||+|.++..|+++.  .+|+|+|+++.|++.++++... ..+++++++|+.+
T Consensus        11 FL~d~~i~-~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~--~~V~avEid~~~~~~~~~~~~~-~~~v~~i~~D~~~   86 (255)
T 3tqs_A           11 FLHDSFVL-QKIVSAIHPQKTDTLVEIGPGRGALTDYLLTEC--DNLALVEIDRDLVAFLQKKYNQ-QKNITIYQNDALQ   86 (255)
T ss_dssp             EECCHHHH-HHHHHHHCCCTTCEEEEECCTTTTTHHHHTTTS--SEEEEEECCHHHHHHHHHHHTT-CTTEEEEESCTTT
T ss_pred             cccCHHHH-HHHHHhcCCCCcCEEEEEcccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHhh-CCCcEEEEcchHh
Confidence            44444433 333344555678899999999999999999884  6799999999999999987643 4689999999998


Q ss_pred             CccCCCCCCCceeEE
Q 009871          136 DDLSRQISPSSIDIV  150 (523)
Q Consensus       136 ~~~~~~~~~~~fD~V  150 (523)
                      .+++..+.++.||+|
T Consensus        87 ~~~~~~~~~~~~~vv  101 (255)
T 3tqs_A           87 FDFSSVKTDKPLRVV  101 (255)
T ss_dssp             CCGGGSCCSSCEEEE
T ss_pred             CCHHHhccCCCeEEE
Confidence            865432334578855

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=98.96  E-value=1.7e-09  Score=102.17  Aligned_cols=109  Identities=11%  Similarity=0.007  Sum_probs=80.9

Q ss_pred             CCCeEEEECCCccHHHHHHHhcC--CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhh--c
Q 009871          335 AGKKVLELGCGCGGICSMVAAGS--ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEE--N  410 (523)
Q Consensus       335 ~~~~VLElG~G~G~l~~~~a~~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~--~  410 (523)
                      ++++|||||||+|..+..++...  ..+|+++|+++.+++.+++|+..++..   .++.+...|..+.  +..+...  .
T Consensus        70 ~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~---~~i~~~~gda~~~--l~~l~~~~~~  144 (237)
T 3c3y_A           70 NAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVE---HKINFIESDAMLA--LDNLLQGQES  144 (237)
T ss_dssp             TCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCG---GGEEEEESCHHHH--HHHHHHSTTC
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC---CcEEEEEcCHHHH--HHHHHhccCC
Confidence            56799999999998888887763  469999999999999999999987764   4677765544221  1111000  1


Q ss_pred             CCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEe
Q 009871          411 NEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHI  460 (523)
Q Consensus       411 ~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~  460 (523)
                      .++||+|+..   ........+++.+.++|         +|||.+++...
T Consensus       145 ~~~fD~I~~d---~~~~~~~~~l~~~~~~L---------~pGG~lv~d~~  182 (237)
T 3c3y_A          145 EGSYDFGFVD---ADKPNYIKYHERLMKLV---------KVGGIVAYDNT  182 (237)
T ss_dssp             TTCEEEEEEC---SCGGGHHHHHHHHHHHE---------EEEEEEEEECT
T ss_pred             CCCcCEEEEC---CchHHHHHHHHHHHHhc---------CCCeEEEEecC
Confidence            4689999975   34556788999999999         67998887543

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=98.96  E-value=2.7e-10  Score=107.62  Aligned_cols=115  Identities=6%  Similarity=0.055  Sum_probs=79.6

Q ss_pred             CCCeEEEECCCccccHHHHHhh----CCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCc-cCCCCCCCceeE
Q 009871           75 GRKDVLEVGCGAGNTIFPLIAA----YPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDD-LSRQISPSSIDI  149 (523)
Q Consensus        75 ~~~~iLDiGcG~G~~~~~l~~~----~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~-~~~~~~~~~fD~  149 (523)
                      ++.+|||||||+|..+..|++.    .++++|+|||+|+.|++.|+..    ..+++++++|+.+.. ++ .....+||+
T Consensus        81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~~----~~~v~~~~gD~~~~~~l~-~~~~~~fD~  155 (236)
T 2bm8_A           81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASD----MENITLHQGDCSDLTTFE-HLREMAHPL  155 (236)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGG----CTTEEEEECCSSCSGGGG-GGSSSCSSE
T ss_pred             CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhcc----CCceEEEECcchhHHHHH-hhccCCCCE
Confidence            4679999999999999999987    6788999999999999888732    367999999998631 11 122347999


Q ss_pred             EEEccccc-cceeeecce--EEecCCeEEEe--------eCHHHHHHHHHhC--CCcE
Q 009871          150 VTMERLTG-KDQKISENF--YVRGDGTRAFY--------FSNDFLTSLFKEN--GFDV  194 (523)
Q Consensus       150 V~~~~~~~-~~~~~~~~~--~~~~~g~~~~~--------~~~~~l~~ll~~~--Gf~~  194 (523)
                      |++..... ....+....  .++++|.+++.        +..+.+.+++++.  +|..
T Consensus       156 I~~d~~~~~~~~~l~~~~r~~LkpGG~lv~~d~~~~~~~~~~~~~~~~l~~~~~~f~~  213 (236)
T 2bm8_A          156 IFIDNAHANTFNIMKWAVDHLLEEGDYFIIEDMIPYWYRYAPQLFSEYLGAFRDVLSM  213 (236)
T ss_dssp             EEEESSCSSHHHHHHHHHHHTCCTTCEEEECSCHHHHHHHCHHHHHHHHHTTTTTEEE
T ss_pred             EEECCchHhHHHHHHHHHHhhCCCCCEEEEEeCcccccccCHHHHHHHHHhCcccEEE
Confidence            99811100 001111111  57788887772        3556788888877  4654

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=98.95  E-value=9.9e-10  Score=102.93  Aligned_cols=76  Identities=11%  Similarity=0.120  Sum_probs=63.2

Q ss_pred             CCCCCeEEEECCCccccHHHHHhhC-----CCCEEEEEeCCHHHHHHHHhccccC------CCcEEEEEeeccCCccCCC
Q 009871           73 GAGRKDVLEVGCGAGNTIFPLIAAY-----PDVFVYACDFSPRAVNLVMTHKDFT------ETRVSTFVCDLISDDLSRQ  141 (523)
Q Consensus        73 ~~~~~~iLDiGcG~G~~~~~l~~~~-----~~~~v~gvD~S~~~l~~a~~~~~~~------~~~v~~~~~d~~~~~~~~~  141 (523)
                      ..++.+|||||||+|..+..+++..     |..+|+|+|+|+.+++.|+++....      ..++++.++|+...    .
T Consensus        78 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~----~  153 (227)
T 2pbf_A           78 LKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQV----N  153 (227)
T ss_dssp             SCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGC----C
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhc----c
Confidence            3567899999999999999999885     4578999999999999999876432      35799999999864    2


Q ss_pred             ----CCCCceeEEEE
Q 009871          142 ----ISPSSIDIVTM  152 (523)
Q Consensus       142 ----~~~~~fD~V~~  152 (523)
                          ...++||+|++
T Consensus       154 ~~~~~~~~~fD~I~~  168 (227)
T 2pbf_A          154 EEEKKELGLFDAIHV  168 (227)
T ss_dssp             HHHHHHHCCEEEEEE
T ss_pred             cccCccCCCcCEEEE
Confidence                34578999988

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=98.95  E-value=1.1e-09  Score=117.42  Aligned_cols=78  Identities=14%  Similarity=0.243  Sum_probs=65.5

Q ss_pred             hcCCCCCeEEEECCCccccHHHHHhhC-CCCEEEEEeCCHHHHHHHHhccc-------cCCCcEEEEEeeccCCccCCCC
Q 009871           71 FSGAGRKDVLEVGCGAGNTIFPLIAAY-PDVFVYACDFSPRAVNLVMTHKD-------FTETRVSTFVCDLISDDLSRQI  142 (523)
Q Consensus        71 ~~~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~v~gvD~S~~~l~~a~~~~~-------~~~~~v~~~~~d~~~~~~~~~~  142 (523)
                      +...++.+|||||||+|.++..|++.+ +..+|+|||+|+.|++.|+++..       ....+++++++|+.++    ++
T Consensus       717 L~~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dL----p~  792 (950)
T 3htx_A          717 IRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEF----DS  792 (950)
T ss_dssp             HHHSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSC----CT
T ss_pred             hcccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhC----Cc
Confidence            333578899999999999999999986 45789999999999999988432       1235799999999987    66


Q ss_pred             CCCceeEEEE
Q 009871          143 SPSSIDIVTM  152 (523)
Q Consensus       143 ~~~~fD~V~~  152 (523)
                      ++++||+|++
T Consensus       793 ~d~sFDlVV~  802 (950)
T 3htx_A          793 RLHDVDIGTC  802 (950)
T ss_dssp             TSCSCCEEEE
T ss_pred             ccCCeeEEEE
Confidence            7889999999

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=98.95  E-value=8.7e-10  Score=107.37  Aligned_cols=91  Identities=15%  Similarity=0.236  Sum_probs=71.2

Q ss_pred             hhHHHHhhhhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCcc-CC
Q 009871           62 YLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDL-SR  140 (523)
Q Consensus        62 ~l~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~-~~  140 (523)
                      .+..+..+.+...++.+|||+|||+|.++..+++++++.+|+|+|+|+.|++.|+++....+.+++++++|+.++.. ..
T Consensus        13 vLl~e~l~~L~~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g~~v~~v~~d~~~l~~~l~   92 (301)
T 1m6y_A           13 VMVREVIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLK   92 (301)
T ss_dssp             TTHHHHHHHHCCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHH
T ss_pred             HHHHHHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHH
Confidence            45556656666667889999999999999999999877899999999999999999875444689999999976520 00


Q ss_pred             CCCCCceeEEEE
Q 009871          141 QISPSSIDIVTM  152 (523)
Q Consensus       141 ~~~~~~fD~V~~  152 (523)
                      ....++||.|++
T Consensus        93 ~~g~~~~D~Vl~  104 (301)
T 1m6y_A           93 TLGIEKVDGILM  104 (301)
T ss_dssp             HTTCSCEEEEEE
T ss_pred             hcCCCCCCEEEE
Confidence            011157999976

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=98.95  E-value=1.1e-08  Score=93.80  Aligned_cols=141  Identities=13%  Similarity=0.175  Sum_probs=88.8

Q ss_pred             hHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcC---CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEee
Q 009871          319 SAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGS---ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRL  395 (523)
Q Consensus       319 ~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~---~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l  395 (523)
                      ++..|.+.+.....+.++.+|||||||+|.++..++...   ..+|+++|+++.+           .    ..++.+...
T Consensus         6 ~~~kl~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~-----------~----~~~v~~~~~   70 (201)
T 2plw_A            6 AAYKLIELDNKYLFLKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD-----------P----IPNVYFIQG   70 (201)
T ss_dssp             THHHHHHHHHHHCCCCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC-----------C----CTTCEEEEC
T ss_pred             HHHHHHHHHHHcCCCCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC-----------C----CCCceEEEc
Confidence            455566665554444577899999999999999888874   3689999999831           0    134566666


Q ss_pred             ecCCCC-----------------cchhhh-hhcCCCccEEEEccccCCCC----Ch-------HHHHHHHHHHhhccCCC
Q 009871          396 EWGNRD-----------------HIEAIK-EENNEGFEVILGTDVSYIPE----AI-------LPLFATAKELTASSNKS  446 (523)
Q Consensus       396 dw~~~~-----------------~~~~~~-~~~~~~fD~Ii~~d~~y~~~----~~-------~~l~~~l~~ll~~~~~~  446 (523)
                      |+.+..                 ....+. .++..+||+|++.-.+....    ..       ..+++.+.++|      
T Consensus        71 d~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~L------  144 (201)
T 2plw_A           71 EIGKDNMNNIKNINYIDNMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYI------  144 (201)
T ss_dssp             CTTTTSSCCC-----------CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHE------
T ss_pred             cccchhhhhhccccccccccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHc------
Confidence            665432                 000011 13456899999865544321    11       23778888999      


Q ss_pred             CCCCCCcEEEEEEeecCCChhHHHHHHHHcCCEEEEEcC
Q 009871          447 LREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLVDKWP  485 (523)
Q Consensus       447 ~~~~~~g~~~l~~~~r~~~~~~~~~~~~~~gf~~~~~~~  485 (523)
                         +|||.+++.... ......+...++. .|....+..
T Consensus       145 ---kpgG~lv~~~~~-~~~~~~l~~~l~~-~f~~v~~~~  178 (201)
T 2plw_A          145 ---NIGGTYIVKMYL-GSQTNNLKTYLKG-MFQLVHTTK  178 (201)
T ss_dssp             ---EEEEEEEEEEEC-STTHHHHHHHHHT-TEEEEEECC
T ss_pred             ---cCCCEEEEEEeC-CCCHHHHHHHHHH-HHheEEEEC
Confidence               679998875433 3344556666655 466555544

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=98.95  E-value=6.4e-10  Score=102.33  Aligned_cols=75  Identities=12%  Similarity=0.109  Sum_probs=60.4

Q ss_pred             CCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCC---CcEEEEEeeccCCccCCCCCCCc-eeEE
Q 009871           75 GRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE---TRVSTFVCDLISDDLSRQISPSS-IDIV  150 (523)
Q Consensus        75 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~---~~v~~~~~d~~~~~~~~~~~~~~-fD~V  150 (523)
                      ++.+|||+|||+|.++..+++++ ..+|+|+|+|+.|++.|+++....+   .+++++++|+.+.  ...+++++ ||+|
T Consensus        53 ~~~~vLDlGcGtG~~~~~~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~~~fD~I  129 (201)
T 2ift_A           53 HQSECLDGFAGSGSLGFEALSRQ-AKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDF--LKQPQNQPHFDVV  129 (201)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTT-CSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHH--TTSCCSSCCEEEE
T ss_pred             CCCeEEEcCCccCHHHHHHHHcc-CCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHH--HHhhccCCCCCEE
Confidence            56899999999999999877774 2579999999999999999875443   5899999998753  11123578 9999


Q ss_pred             EE
Q 009871          151 TM  152 (523)
Q Consensus       151 ~~  152 (523)
                      ++
T Consensus       130 ~~  131 (201)
T 2ift_A          130 FL  131 (201)
T ss_dssp             EE
T ss_pred             EE
Confidence            98

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=98.95  E-value=2.2e-09  Score=108.07  Aligned_cols=125  Identities=14%  Similarity=0.068  Sum_probs=86.6

Q ss_pred             CCCeEEEECCCccHHHHHHHhc--CCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCc-eEEEeeecCCCCcchhhh-hhc
Q 009871          335 AGKKVLELGCGCGGICSMVAAG--SADLVVATDGDSIALDLLAQNVTANLKPPFLAK-LITKRLEWGNRDHIEAIK-EEN  410 (523)
Q Consensus       335 ~~~~VLElG~G~G~l~~~~a~~--~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~-v~~~~ldw~~~~~~~~~~-~~~  410 (523)
                      +|.+|||++||+|.+++.+++.  ++.+|+++|+++.+++.+++|++.|++.   .+ +.+...|-.     .-+. .+ 
T Consensus        52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~---~~~v~v~~~Da~-----~~l~~~~-  122 (392)
T 3axs_A           52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIP---EDRYEIHGMEAN-----FFLRKEW-  122 (392)
T ss_dssp             SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCC---GGGEEEECSCHH-----HHHHSCC-
T ss_pred             CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCC---CceEEEEeCCHH-----HHHHHhh-
Confidence            5789999999999999998885  4579999999999999999999999875   33 665543321     1111 11 


Q ss_pred             CCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecC-CChhHHHHHHHHcCCEEE
Q 009871          411 NEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ-VDEPSMLSAATQCGFRLV  481 (523)
Q Consensus       411 ~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~-~~~~~~~~~~~~~gf~~~  481 (523)
                      ...||+|+.. . |  .....+++.+.++|         +++|.++++..... .........++++|....
T Consensus       123 ~~~fD~V~lD-P-~--g~~~~~l~~a~~~L---------k~gGll~~t~t~~~~l~g~~~~~~~rkYg~~p~  181 (392)
T 3axs_A          123 GFGFDYVDLD-P-F--GTPVPFIESVALSM---------KRGGILSLTATDTAPLSGTYPKTCMRRYMARPL  181 (392)
T ss_dssp             SSCEEEEEEC-C-S--SCCHHHHHHHHHHE---------EEEEEEEEEECCHHHHTTSSHHHHHHHHSSBCC
T ss_pred             CCCCcEEEEC-C-C--cCHHHHHHHHHHHh---------CCCCEEEEEecchhhhccccHHHHHHHhCCccc
Confidence            4589999985 4 4  33467888888889         56888877663211 000133455566666543

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=98.95  E-value=6.9e-10  Score=102.17  Aligned_cols=74  Identities=11%  Similarity=0.090  Sum_probs=60.4

Q ss_pred             CCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCC-CcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871           75 GRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQISPSSIDIVTM  152 (523)
Q Consensus        75 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~V~~  152 (523)
                      ++.+|||+|||+|.++..+++++. .+|+|+|+|+.|++.|+++....+ .+++++++|+.+. +  +..+++||+|++
T Consensus        54 ~~~~vLDlgcG~G~~~~~l~~~~~-~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~-~--~~~~~~fD~V~~  128 (202)
T 2fpo_A           54 VDAQCLDCFAGSGALGLEALSRYA-AGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSF-L--AQKGTPHNIVFV  128 (202)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHH-H--SSCCCCEEEEEE
T ss_pred             CCCeEEEeCCCcCHHHHHHHhcCC-CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHH-H--hhcCCCCCEEEE
Confidence            468999999999999998877742 479999999999999999875433 5899999998752 1  334678999988

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=98.95  E-value=7.9e-09  Score=99.18  Aligned_cols=114  Identities=18%  Similarity=0.241  Sum_probs=84.1

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC--CCcEEEEEeeccCCccCCCCCCCceeEEE
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISDDLSRQISPSSIDIVT  151 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~~~~~~~~~~fD~V~  151 (523)
                      .++.+|||+|||+|.++..+++.+ .++|+|+|+||.+++.++++...+  ..+++++++|+.+.     .+.+.||.|+
T Consensus       124 ~~g~~VlD~~aG~G~~~i~~a~~g-~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~-----~~~~~~D~Vi  197 (278)
T 3k6r_A          124 KPDELVVDMFAGIGHLSLPIAVYG-KAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDF-----PGENIADRIL  197 (278)
T ss_dssp             CTTCEEEETTCTTTTTTHHHHHHT-CCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTC-----CCCSCEEEEE
T ss_pred             CCCCEEEEecCcCcHHHHHHHHhc-CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHh-----ccccCCCEEE
Confidence            478999999999999999999885 468999999999999999987654  35799999999865     2467899999


Q ss_pred             E------ccccccceeeecceEEecCCeEEEe-e---------CHHHHHHHHHhCCCcEEEEE
Q 009871          152 M------ERLTGKDQKISENFYVRGDGTRAFY-F---------SNDFLTSLFKENGFDVEELG  198 (523)
Q Consensus       152 ~------~~~~~~~~~~~~~~~~~~~g~~~~~-~---------~~~~l~~ll~~~Gf~~~~~~  198 (523)
                      +      ..|+...-.     .++++|...++ +         ..+.+.++.++.|+.+..+.
T Consensus       198 ~~~p~~~~~~l~~a~~-----~lk~gG~ih~~~~~~e~~~~~~~~e~i~~~~~~~g~~v~~~~  255 (278)
T 3k6r_A          198 MGYVVRTHEFIPKALS-----IAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDVEKLN  255 (278)
T ss_dssp             ECCCSSGGGGHHHHHH-----HEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEEEEEE
T ss_pred             ECCCCcHHHHHHHHHH-----HcCCCCEEEEEeeecccccchhHHHHHHHHHHHcCCcEEEEE
Confidence            8      222221111     45666654332 1         24567888889999865443

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=98.94  E-value=1.5e-09  Score=105.30  Aligned_cols=123  Identities=17%  Similarity=0.190  Sum_probs=77.4

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeC-CHHHHHHHHhcc-----ccCC------CcEEEEEeeccCC--ccC
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDF-SPRAVNLVMTHK-----DFTE------TRVSTFVCDLISD--DLS  139 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~-S~~~l~~a~~~~-----~~~~------~~v~~~~~d~~~~--~~~  139 (523)
                      .++.+|||||||+|.++..+++.+ ..+|+|+|+ |+.|++.|+++.     ...+      .++++...|..+.  ++.
T Consensus        78 ~~~~~vLDlG~G~G~~~~~~a~~~-~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  156 (281)
T 3bzb_A           78 IAGKTVCELGAGAGLVSIVAFLAG-ADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQ  156 (281)
T ss_dssp             TTTCEEEETTCTTSHHHHHHHHTT-CSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHHH
T ss_pred             cCCCeEEEecccccHHHHHHHHcC-CCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHH
Confidence            467899999999999999888874 348999999 899999999986     3221      2577777666532  010


Q ss_pred             CCCCCCceeEEEEcccccc---ceeeec--ceEEe---c--CCeEEEeeC---------HHHHHHHHHhCC-CcEEEE
Q 009871          140 RQISPSSIDIVTMERLTGK---DQKISE--NFYVR---G--DGTRAFYFS---------NDFLTSLFKENG-FDVEEL  197 (523)
Q Consensus       140 ~~~~~~~fD~V~~~~~~~~---~~~~~~--~~~~~---~--~g~~~~~~~---------~~~l~~ll~~~G-f~~~~~  197 (523)
                      ..+++++||+|++......   ...+..  ...++   +  +|..+..++         ..++.+.+++.| |.+..+
T Consensus       157 ~~~~~~~fD~Ii~~dvl~~~~~~~~ll~~l~~~Lk~~~p~~gG~l~v~~~~~~~~~~~~~~~~~~~l~~~G~f~v~~~  234 (281)
T 3bzb_A          157 RCTGLQRFQVVLLADLLSFHQAHDALLRSVKMLLALPANDPTAVALVTFTHHRPHLAERDLAFFRLVNADGALIAEPW  234 (281)
T ss_dssp             HHHSCSSBSEEEEESCCSCGGGHHHHHHHHHHHBCCTTTCTTCEEEEEECC--------CTHHHHHHHHSTTEEEEEE
T ss_pred             hhccCCCCCEEEEeCcccChHHHHHHHHHHHHHhcccCCCCCCEEEEEEEeeecccchhHHHHHHHHHhcCCEEEEEe
Confidence            0013578999998111000   000000  01355   6  665443322         345667888999 998766

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=98.94  E-value=4.7e-09  Score=101.29  Aligned_cols=113  Identities=10%  Similarity=0.054  Sum_probs=83.4

Q ss_pred             CCCeEEEECCCc---cHHHHHHHhcC-CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcc---hhh-
Q 009871          335 AGKKVLELGCGC---GGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHI---EAI-  406 (523)
Q Consensus       335 ~~~~VLElG~G~---G~l~~~~a~~~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~---~~~-  406 (523)
                      ...+|||||||+   |.+...+.+.. ..+|+++|+|+.|++.+++++..      ..++.+...|..+....   ..+ 
T Consensus        77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~------~~~v~~~~~D~~~~~~~~~~~~~~  150 (274)
T 2qe6_A           77 GISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAK------DPNTAVFTADVRDPEYILNHPDVR  150 (274)
T ss_dssp             CCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTT------CTTEEEEECCTTCHHHHHHSHHHH
T ss_pred             CCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCC------CCCeEEEEeeCCCchhhhccchhh
Confidence            347999999999   96665555543 45899999999999999998743      14577777766543111   000 


Q ss_pred             hhhcCCCccEEEEccccCCCCC--hHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec
Q 009871          407 KEENNEGFEVILGTDVSYIPEA--ILPLFATAKELTASSNKSLREDQQPAFILCHIFR  462 (523)
Q Consensus       407 ~~~~~~~fD~Ii~~d~~y~~~~--~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r  462 (523)
                      ..+...+||+|+++.++++...  ...+++.+.++|         +|||.++++....
T Consensus       151 ~~~d~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L---------~pGG~l~i~~~~~  199 (274)
T 2qe6_A          151 RMIDFSRPAAIMLVGMLHYLSPDVVDRVVGAYRDAL---------APGSYLFMTSLVD  199 (274)
T ss_dssp             HHCCTTSCCEEEETTTGGGSCTTTHHHHHHHHHHHS---------CTTCEEEEEEEBC
T ss_pred             ccCCCCCCEEEEEechhhhCCcHHHHHHHHHHHHhC---------CCCcEEEEEEecC
Confidence            1123358999999999987554  899999999999         7899999988764

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=98.94  E-value=3.4e-09  Score=100.53  Aligned_cols=115  Identities=16%  Similarity=0.164  Sum_probs=82.6

Q ss_pred             hcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCC--CcEEEEEeeccCCccCCCCCCCcee
Q 009871           71 FSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQISPSSID  148 (523)
Q Consensus        71 ~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD  148 (523)
                      +...++.+|||+|||+|.++..+++.  +.+|+|+|+|+.+++.|+++.....  .++++.++|+.+.    .+++++||
T Consensus        87 ~~~~~~~~vldiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~----~~~~~~~D  160 (248)
T 2yvl_A           87 LNLNKEKRVLEFGTGSGALLAVLSEV--AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDA----EVPEGIFH  160 (248)
T ss_dssp             TTCCTTCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTS----CCCTTCBS
T ss_pred             cCCCCCCEEEEeCCCccHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhc----ccCCCccc
Confidence            34457889999999999999999988  6789999999999999999764332  5799999999764    22567899


Q ss_pred             EEEEc-----cccccceeeecceEEecCCeEEEeeC-HH---HHHHHHHhCCCcEEEE
Q 009871          149 IVTME-----RLTGKDQKISENFYVRGDGTRAFYFS-ND---FLTSLFKENGFDVEEL  197 (523)
Q Consensus       149 ~V~~~-----~~~~~~~~~~~~~~~~~~g~~~~~~~-~~---~l~~ll~~~Gf~~~~~  197 (523)
                      +|++.     .++....+     .++++|.++.... .+   ++.+.+.+. |..++.
T Consensus       161 ~v~~~~~~~~~~l~~~~~-----~L~~gG~l~~~~~~~~~~~~~~~~l~~~-f~~~~~  212 (248)
T 2yvl_A          161 AAFVDVREPWHYLEKVHK-----SLMEGAPVGFLLPTANQVIKLLESIENY-FGNLEV  212 (248)
T ss_dssp             EEEECSSCGGGGHHHHHH-----HBCTTCEEEEEESSHHHHHHHHHHSTTT-EEEEEE
T ss_pred             EEEECCcCHHHHHHHHHH-----HcCCCCEEEEEeCCHHHHHHHHHHHHhh-CCcceE
Confidence            99981     22222222     5788888877553 33   445555555 654433

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=98.94  E-value=1.7e-09  Score=108.49  Aligned_cols=113  Identities=19%  Similarity=0.263  Sum_probs=81.7

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEEE-
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM-  152 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~-  152 (523)
                      .+..+|||||||+|..+..+++++|+.+++|+|+ +.|++.|++.     .+++++.+|+.+     +++  .||+|++ 
T Consensus       187 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~d~~~-----~~p--~~D~v~~~  253 (352)
T 1fp2_A          187 DGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSGS-----NNLTYVGGDMFT-----SIP--NADAVLLK  253 (352)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCB-----TTEEEEECCTTT-----CCC--CCSEEEEE
T ss_pred             ccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhcccC-----CCcEEEeccccC-----CCC--CccEEEee
Confidence            4568999999999999999999999999999999 9999888763     359999999964     233  3999999 


Q ss_pred             ------------------cccccc---ceeeecceEEec-CCeE------------------EEeeCHHHHHHHHHhCCC
Q 009871          153 ------------------ERLTGK---DQKISENFYVRG-DGTR------------------AFYFSNDFLTSLFKENGF  192 (523)
Q Consensus       153 ------------------~~~~~~---~~~~~~~~~~~~-~g~~------------------~~~~~~~~l~~ll~~~Gf  192 (523)
                                        .+.+++   ++++.-.....+ .+..                  -..++.+++.++++++||
T Consensus       254 ~~lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~t~~e~~~ll~~aGf  333 (352)
T 1fp2_A          254 YILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMACLNGKERNEEEWKKLFIEAGF  333 (352)
T ss_dssp             SCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGGGTCCCEEHHHHHHHHHHTTC
T ss_pred             hhhccCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeecCCCCCccchhhhHhhccHHHHhccCCCCCHHHHHHHHHHCCC
Confidence                              233344   444321111111 1100                  012478999999999999


Q ss_pred             cEEEEEe
Q 009871          193 DVEELGL  199 (523)
Q Consensus       193 ~~~~~~~  199 (523)
                      ..+++..
T Consensus       334 ~~~~~~~  340 (352)
T 1fp2_A          334 QHYKISP  340 (352)
T ss_dssp             CEEEEEE
T ss_pred             CeeEEEe
Confidence            9887754

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=98.94  E-value=2.6e-09  Score=103.11  Aligned_cols=75  Identities=20%  Similarity=0.262  Sum_probs=64.3

Q ss_pred             CCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCC-CcEEEEEeeccCCccCCCCCCCceeEEE
Q 009871           73 GAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQISPSSIDIVT  151 (523)
Q Consensus        73 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~V~  151 (523)
                      ..++.+|||+|||+|.++..+++.+++.+|+|+|+|+.|++.|+++...++ .++.++++|+.+.    +. .++||+|+
T Consensus       117 ~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~----~~-~~~~D~Vi  191 (272)
T 3a27_A          117 SNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDV----EL-KDVADRVI  191 (272)
T ss_dssp             CCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGC----CC-TTCEEEEE
T ss_pred             cCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHc----Cc-cCCceEEE
Confidence            356789999999999999999999777789999999999999999875443 5789999999865    22 56899999


Q ss_pred             E
Q 009871          152 M  152 (523)
Q Consensus       152 ~  152 (523)
                      +
T Consensus       192 ~  192 (272)
T 3a27_A          192 M  192 (272)
T ss_dssp             E
T ss_pred             E
Confidence            9

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=98.93  E-value=3.2e-09  Score=104.76  Aligned_cols=132  Identities=14%  Similarity=0.093  Sum_probs=88.1

Q ss_pred             CCCeEEEECCCccHHHHHHHhc-CCCEEEEEcCChHHHHHHHHHHHh--cCCCCCCCceEEEeeecCCCCcchhhhhhcC
Q 009871          335 AGKKVLELGCGCGGICSMVAAG-SADLVVATDGDSIALDLLAQNVTA--NLKPPFLAKLITKRLEWGNRDHIEAIKEENN  411 (523)
Q Consensus       335 ~~~~VLElG~G~G~l~~~~a~~-~~~~V~~~D~~~~~l~~~~~n~~~--n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~  411 (523)
                      ++++|||||||+|.++..+++. +..+|+++|+|+.+++.+++|+..  ++..  ..++.+...|+.+.     + ...+
T Consensus       116 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~--~~~v~~~~~D~~~~-----l-~~~~  187 (321)
T 2pt6_A          116 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYE--DKRVNVFIEDASKF-----L-ENVT  187 (321)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGG--STTEEEEESCHHHH-----H-HHCC
T ss_pred             CCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccC--CCcEEEEEccHHHH-----H-hhcC
Confidence            4579999999999888888877 457999999999999999999765  2221  24677765554321     1 1124


Q ss_pred             CCccEEEEcccc-CC-CCCh--HHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCCh---hHHHHHHHHcCCEEEEEc
Q 009871          412 EGFEVILGTDVS-YI-PEAI--LPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDE---PSMLSAATQCGFRLVDKW  484 (523)
Q Consensus       412 ~~fD~Ii~~d~~-y~-~~~~--~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~---~~~~~~~~~~gf~~~~~~  484 (523)
                      ++||+|++.-.- +. ....  ..+++.+.++|         +|||.+++.........   ..+.+.+++. |.....+
T Consensus       188 ~~fDvIi~d~~~p~~~~~~l~~~~~l~~~~~~L---------kpgG~lv~~~~~~~~~~~~~~~~~~~l~~~-F~~v~~~  257 (321)
T 2pt6_A          188 NTYDVIIVDSSDPIGPAETLFNQNFYEKIYNAL---------KPNGYCVAQCESLWIHVGTIKNMIGYAKKL-FKKVEYA  257 (321)
T ss_dssp             SCEEEEEEECCCSSSGGGGGSSHHHHHHHHHHE---------EEEEEEEEEECCTTTCHHHHHHHHHHHHTT-CSEEEEE
T ss_pred             CCceEEEECCcCCCCcchhhhHHHHHHHHHHhc---------CCCcEEEEEcCCcccCHHHHHHHHHHHHHH-CCCeEEE
Confidence            689999984211 11 1111  78899999999         67999988754433333   2445556555 4444443

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=98.93  E-value=2.3e-09  Score=106.84  Aligned_cols=74  Identities=19%  Similarity=0.193  Sum_probs=62.5

Q ss_pred             CCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCC--CcEEEEEeeccCCccCCCCCCCceeEE
Q 009871           73 GAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQISPSSIDIV  150 (523)
Q Consensus        73 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~V  150 (523)
                      ..++.+|||||||+|.++..+++.+ ..+|+|+|+|+ |++.|+++....+  .+++++++|+.++    ++++++||+|
T Consensus        62 ~~~~~~VLDiGcGtG~ls~~la~~g-~~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~----~~~~~~~D~I  135 (340)
T 2fyt_A           62 IFKDKVVLDVGCGTGILSMFAAKAG-AKKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEEV----HLPVEKVDVI  135 (340)
T ss_dssp             GTTTCEEEEETCTTSHHHHHHHHTT-CSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTS----CCSCSCEEEE
T ss_pred             hcCCCEEEEeeccCcHHHHHHHHcC-CCEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHHh----cCCCCcEEEE
Confidence            3567899999999999999998873 45899999997 9999998764332  6899999999977    5667899999


Q ss_pred             EE
Q 009871          151 TM  152 (523)
Q Consensus       151 ~~  152 (523)
                      ++
T Consensus       136 vs  137 (340)
T 2fyt_A          136 IS  137 (340)
T ss_dssp             EE
T ss_pred             EE
Confidence            98

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=98.93  E-value=2.7e-09  Score=107.86  Aligned_cols=115  Identities=15%  Similarity=0.139  Sum_probs=83.9

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCC-CcEEEEEeeccC-CccCCCC-CCCceeEE
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLIS-DDLSRQI-SPSSIDIV  150 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~-~~v~~~~~d~~~-~~~~~~~-~~~~fD~V  150 (523)
                      .++.+|||+| |+|.++..++..+++.+|+|+|+|+.|++.|+++....+ .+++++++|+.+ +    +. .+++||+|
T Consensus       171 ~~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l----~~~~~~~fD~V  245 (373)
T 2qm3_A          171 LENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPL----PDYALHKFDTF  245 (373)
T ss_dssp             STTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCC----CTTTSSCBSEE
T ss_pred             CCCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhc----hhhccCCccEE
Confidence            3578999999 999999999988776799999999999999999875332 379999999986 3    22 35689999


Q ss_pred             EEc-cc--------cccceeeecceEEecCCeE-EEee-----CH---HHHHHHHH-hCCCcEEEEE
Q 009871          151 TME-RL--------TGKDQKISENFYVRGDGTR-AFYF-----SN---DFLTSLFK-ENGFDVEELG  198 (523)
Q Consensus       151 ~~~-~~--------~~~~~~~~~~~~~~~~g~~-~~~~-----~~---~~l~~ll~-~~Gf~~~~~~  198 (523)
                      ++. .+        +....+     .++++|.. ++-.     +.   .++.+.+. ..||....+.
T Consensus       246 i~~~p~~~~~~~~~l~~~~~-----~LkpgG~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~  307 (373)
T 2qm3_A          246 ITDPPETLEAIRAFVGRGIA-----TLKGPRCAGYFGITRRESSLDKWREIQKLLLNEFNVVITDII  307 (373)
T ss_dssp             EECCCSSHHHHHHHHHHHHH-----TBCSTTCEEEEEECTTTCCHHHHHHHHHHHHHTSCCEEEEEE
T ss_pred             EECCCCchHHHHHHHHHHHH-----HcccCCeEEEEEEecCcCCHHHHHHHHHHHHHhcCcchhhhh
Confidence            992 11        111112     56778843 3322     34   67778887 8898775443

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=98.93  E-value=1.6e-09  Score=103.39  Aligned_cols=77  Identities=12%  Similarity=0.084  Sum_probs=62.1

Q ss_pred             CCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCC--CcEEEEEeeccCCccCCCCC---CCceeE
Q 009871           75 GRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQIS---PSSIDI  149 (523)
Q Consensus        75 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~---~~~fD~  149 (523)
                      ++.+|||+|||+|.++..++++.++.+|+|+|+|+.|++.|+++....+  .+++++++|+.+. +..+++   +++||+
T Consensus        65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~~~~~~~fD~  143 (254)
T 2h00_A           65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTL-LMDALKEESEIIYDF  143 (254)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCS-STTTSTTCCSCCBSE
T ss_pred             CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhh-hhhhhhcccCCcccE
Confidence            5679999999999999999988777899999999999999999875432  3599999998652 111233   368999


Q ss_pred             EEE
Q 009871          150 VTM  152 (523)
Q Consensus       150 V~~  152 (523)
                      |++
T Consensus       144 i~~  146 (254)
T 2h00_A          144 CMC  146 (254)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            999

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=98.93  E-value=7.6e-10  Score=103.37  Aligned_cols=120  Identities=13%  Similarity=0.174  Sum_probs=78.1

Q ss_pred             CCCCeEEEECCCccccHHHHHhhC-CCCEEEEEeCCHHHHHHHHhccccCC--CcEEEEEeeccCC--ccCCCCCCCcee
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAY-PDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISD--DLSRQISPSSID  148 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~-~~~~v~gvD~S~~~l~~a~~~~~~~~--~~v~~~~~d~~~~--~~~~~~~~~~fD  148 (523)
                      .++.+|||||||+|..+..+++.. ++++|+|+|+|+.|++.|+++....+  .+++++++|+.+.  .+...+..++||
T Consensus        57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD  136 (221)
T 3u81_A           57 YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLD  136 (221)
T ss_dssp             HCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCS
T ss_pred             cCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceE
Confidence            457899999999999999999875 47899999999999999999764332  4699999998542  111112237899


Q ss_pred             EEEEc----cccccceeeecceEEecCCeEEEe----eCHHHHHHHHHhC-CCc
Q 009871          149 IVTME----RLTGKDQKISENFYVRGDGTRAFY----FSNDFLTSLFKEN-GFD  193 (523)
Q Consensus       149 ~V~~~----~~~~~~~~~~~~~~~~~~g~~~~~----~~~~~l~~ll~~~-Gf~  193 (523)
                      +|++.    .+......+...-.++++|.+++.    ....++.+.+.+. +|.
T Consensus       137 ~V~~d~~~~~~~~~~~~~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~~~~~  190 (221)
T 3u81_A          137 MVFLDHWKDRYLPDTLLLEKCGLLRKGTVLLADNVIVPGTPDFLAYVRGSSSFE  190 (221)
T ss_dssp             EEEECSCGGGHHHHHHHHHHTTCCCTTCEEEESCCCCCCCHHHHHHHHHCTTEE
T ss_pred             EEEEcCCcccchHHHHHHHhccccCCCeEEEEeCCCCcchHHHHHHHhhCCCce
Confidence            99991    110000000000157788877652    1234555555544 344

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=98.92  E-value=5.4e-10  Score=106.38  Aligned_cols=78  Identities=14%  Similarity=0.203  Sum_probs=62.9

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCC-CCEEEEEeCCHHHHHHHHhccccC--CCcEEEEEeeccCCccCCCCCCCceeEE
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYP-DVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISDDLSRQISPSSIDIV  150 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~-~~~v~gvD~S~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~~~~~~~~~~fD~V  150 (523)
                      .++.+|||||||+|..+..+++..| +.+|+|+|+|+.+++.|+++....  ..+++++++|+.+. ++.....++||+|
T Consensus        62 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~-l~~~~~~~~fD~V  140 (248)
T 3tfw_A           62 TQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQS-LESLGECPAFDLI  140 (248)
T ss_dssp             HTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHH-HHTCCSCCCCSEE
T ss_pred             cCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHH-HHhcCCCCCeEEE
Confidence            4678999999999999999999876 789999999999999999986433  24799999998752 1111123589999


Q ss_pred             EE
Q 009871          151 TM  152 (523)
Q Consensus       151 ~~  152 (523)
                      ++
T Consensus       141 ~~  142 (248)
T 3tfw_A          141 FI  142 (248)
T ss_dssp             EE
T ss_pred             EE
Confidence            97

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=98.92  E-value=4.4e-09  Score=106.33  Aligned_cols=113  Identities=15%  Similarity=0.239  Sum_probs=81.8

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEEE-
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM-  152 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~-  152 (523)
                      .+..+|||||||+|..+..+++++|+.+++++|+ +.|++.|++.     .+++++.+|+.+     +++.  ||+|++ 
T Consensus       208 ~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~d~~~-----~~~~--~D~v~~~  274 (372)
T 1fp1_D          208 EGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPPL-----SGIEHVGGDMFA-----SVPQ--GDAMILK  274 (372)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC-----TTEEEEECCTTT-----CCCC--EEEEEEE
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhhc-----CCCEEEeCCccc-----CCCC--CCEEEEe
Confidence            4678999999999999999999999999999999 9999887763     469999999975     2333  999999 


Q ss_pred             ------------------ccccccceeeecceEEecCCeE--------------------EEeeCHHHHHHHHHhCCCcE
Q 009871          153 ------------------ERLTGKDQKISENFYVRGDGTR--------------------AFYFSNDFLTSLFKENGFDV  194 (523)
Q Consensus       153 ------------------~~~~~~~~~~~~~~~~~~~g~~--------------------~~~~~~~~l~~ll~~~Gf~~  194 (523)
                                        .+.+++++++.-.....++...                    -..++.+++.++|+++||.+
T Consensus       275 ~~lh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~  354 (372)
T 1fp1_D          275 AVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEKLSKLSGFSK  354 (372)
T ss_dssp             SSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTTCSE
T ss_pred             cccccCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCccchHHHHHHHhhHHHHhccCCccCCHHHHHHHHHHCCCce
Confidence                              2223444433221111111100                    01247899999999999998


Q ss_pred             EEEEe
Q 009871          195 EELGL  199 (523)
Q Consensus       195 ~~~~~  199 (523)
                      +++..
T Consensus       355 ~~~~~  359 (372)
T 1fp1_D          355 FQVAC  359 (372)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            87754

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=98.92  E-value=2.4e-09  Score=100.84  Aligned_cols=107  Identities=14%  Similarity=0.111  Sum_probs=80.4

Q ss_pred             CCCeEEEECCCccHHHHHHHhcC--CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhc--
Q 009871          335 AGKKVLELGCGCGGICSMVAAGS--ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEEN--  410 (523)
Q Consensus       335 ~~~~VLElG~G~G~l~~~~a~~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~--  410 (523)
                      ++++|||+|||+|..+..++...  ..+|+++|+++.+++.+++|+..++..   .++.+...+..+     .+..+.  
T Consensus        72 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~---~~i~~~~~d~~~-----~l~~l~~~  143 (232)
T 3cbg_A           72 GAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVA---EKISLRLGPALA-----TLEQLTQG  143 (232)
T ss_dssp             TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCG---GGEEEEESCHHH-----HHHHHHTS
T ss_pred             CCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC---CcEEEEEcCHHH-----HHHHHHhc
Confidence            56799999999998888887763  358999999999999999999987764   456665544321     111221  


Q ss_pred             C--CCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee
Q 009871          411 N--EGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIF  461 (523)
Q Consensus       411 ~--~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~  461 (523)
                      +  ++||+|++..   .......+++.+.++|         +|||.+++....
T Consensus       144 ~~~~~fD~V~~d~---~~~~~~~~l~~~~~~L---------kpgG~lv~~~~~  184 (232)
T 3cbg_A          144 KPLPEFDLIFIDA---DKRNYPRYYEIGLNLL---------RRGGLMVIDNVL  184 (232)
T ss_dssp             SSCCCEEEEEECS---CGGGHHHHHHHHHHTE---------EEEEEEEEECTT
T ss_pred             CCCCCcCEEEECC---CHHHHHHHHHHHHHHc---------CCCeEEEEeCCC
Confidence            2  6899999752   2456788899999999         679999886544

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=98.92  E-value=8.5e-10  Score=106.03  Aligned_cols=111  Identities=14%  Similarity=0.080  Sum_probs=77.8

Q ss_pred             CCCeEEEECCCccH----HHHHHHhc-C----CCEEEEEcCChHHHHHHHHHHHhc----CCC-------------C-C-
Q 009871          335 AGKKVLELGCGCGG----ICSMVAAG-S----ADLVVATDGDSIALDLLAQNVTAN----LKP-------------P-F-  386 (523)
Q Consensus       335 ~~~~VLElG~G~G~----l~~~~a~~-~----~~~V~~~D~~~~~l~~~~~n~~~n----~~~-------------~-~-  386 (523)
                      ++.+|||+|||||.    ++..++.. +    ..+|+|||+|+.||+.|++++...    +++             . . 
T Consensus       105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~  184 (274)
T 1af7_A          105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG  184 (274)
T ss_dssp             SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred             CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence            35699999999996    55555554 3    248999999999999999875210    000             0 0 


Q ss_pred             --------CCceEEEeeecCCCCcchhhhhhc-CCCccEEEEccccCCCC--ChHHHHHHHHHHhhccCCCCCCCCCcEE
Q 009871          387 --------LAKLITKRLEWGNRDHIEAIKEEN-NEGFEVILGTDVSYIPE--AILPLFATAKELTASSNKSLREDQQPAF  455 (523)
Q Consensus       387 --------~~~v~~~~ldw~~~~~~~~~~~~~-~~~fD~Ii~~d~~y~~~--~~~~l~~~l~~ll~~~~~~~~~~~~g~~  455 (523)
                              ...|.+...|+.+.       +++ .++||+|+|..++.+.+  ....+++.+.+.|         +|||.+
T Consensus       185 ~~~v~~~lr~~V~F~~~dl~~~-------~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L---------~pgG~L  248 (274)
T 1af7_A          185 LVRVRQELANYVEFSSVNLLEK-------QYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLL---------KPDGLL  248 (274)
T ss_dssp             EEEECHHHHTTEEEEECCTTCS-------SCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGE---------EEEEEE
T ss_pred             ceeechhhcccCeEEecccCCC-------CCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHh---------CCCcEE
Confidence                    02577777777652       111 35899999998875433  4478999999999         679999


Q ss_pred             EEEEee
Q 009871          456 ILCHIF  461 (523)
Q Consensus       456 ~l~~~~  461 (523)
                      ++.+..
T Consensus       249 ~lg~sE  254 (274)
T 1af7_A          249 FAGHSE  254 (274)
T ss_dssp             EECTTC
T ss_pred             EEEecc
Confidence            986543

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=98.91  E-value=1.1e-08  Score=93.34  Aligned_cols=140  Identities=16%  Similarity=0.109  Sum_probs=86.0

Q ss_pred             HHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhc-CC---------CEEEEEcCChHHHHHHHHHHHhcCCCCCCCc
Q 009871          320 AHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAG-SA---------DLVVATDGDSIALDLLAQNVTANLKPPFLAK  389 (523)
Q Consensus       320 a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~-~~---------~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~  389 (523)
                      +..|.+.......+.++.+|||||||+|.++..++.. +.         .+|+++|+++.+           ..    ..
T Consensus         7 ~~kl~~l~~~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~-----------~~----~~   71 (196)
T 2nyu_A            7 AFKLLEVNERHQILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF-----------PL----EG   71 (196)
T ss_dssp             HHHHHHHHHHHCCCCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC-----------CC----TT
T ss_pred             HHHHHHHHHhcCCCCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc-----------cC----CC
Confidence            3445555544444557889999999999999888887 43         689999999831           11    23


Q ss_pred             eEEE-eeecCCCCcchhhh-hhcCCCccEEEEccccCCCCCh-----------HHHHHHHHHHhhccCCCCCCCCCcEEE
Q 009871          390 LITK-RLEWGNRDHIEAIK-EENNEGFEVILGTDVSYIPEAI-----------LPLFATAKELTASSNKSLREDQQPAFI  456 (523)
Q Consensus       390 v~~~-~ldw~~~~~~~~~~-~~~~~~fD~Ii~~d~~y~~~~~-----------~~l~~~l~~ll~~~~~~~~~~~~g~~~  456 (523)
                      +.+. ..|+.+......+. .++..+||+|++.-........           ..+++.+.++|         +|||.++
T Consensus        72 ~~~~~~~d~~~~~~~~~~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L---------kpgG~lv  142 (196)
T 2nyu_A           72 ATFLCPADVTDPRTSQRILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDIL---------QPGGTFL  142 (196)
T ss_dssp             CEEECSCCTTSHHHHHHHHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHE---------EEEEEEE
T ss_pred             CeEEEeccCCCHHHHHHHHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHh---------cCCCEEE
Confidence            4554 44443321111110 1234589999986433322111           47888899999         6799998


Q ss_pred             EEEeecCCChhHHHHHHHHcCCEEEEEcC
Q 009871          457 LCHIFRQVDEPSMLSAATQCGFRLVDKWP  485 (523)
Q Consensus       457 l~~~~r~~~~~~~~~~~~~~gf~~~~~~~  485 (523)
                      +.... ......+...+... |....++.
T Consensus       143 ~~~~~-~~~~~~~~~~l~~~-f~~v~~~~  169 (196)
T 2nyu_A          143 CKTWA-GSQSRRLQRRLTEE-FQNVRIIK  169 (196)
T ss_dssp             EEECC-SGGGHHHHHHHHHH-EEEEEEEC
T ss_pred             EEecC-CccHHHHHHHHHHH-hcceEEEC
Confidence            87543 23344566666654 55555544

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=98.91  E-value=7.3e-09  Score=107.25  Aligned_cols=145  Identities=17%  Similarity=0.083  Sum_probs=97.0

Q ss_pred             hhHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcC-C-CEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEee
Q 009871          318 ESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGS-A-DLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRL  395 (523)
Q Consensus       318 ~~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~-~-~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l  395 (523)
                      .++.+++..+.    ..++.+|||+|||+|+.+..++... . .+|+++|+++.+++.+++|+..++..    ++.+...
T Consensus       246 ~~s~l~~~~l~----~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~----~v~~~~~  317 (450)
T 2yxl_A          246 EASAVASIVLD----PKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIK----IVKPLVK  317 (450)
T ss_dssp             HHHHHHHHHHC----CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCC----SEEEECS
T ss_pred             chhHHHHHhcC----CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCC----cEEEEEc
Confidence            45555566552    3467899999999999999888863 3 68999999999999999999998763    4666655


Q ss_pred             ecCCCCcchhhhhhcCCCccEEEEc------cccCCC---------CCh-------HHHHHHHHHHhhccCCCCCCCCCc
Q 009871          396 EWGNRDHIEAIKEENNEGFEVILGT------DVSYIP---------EAI-------LPLFATAKELTASSNKSLREDQQP  453 (523)
Q Consensus       396 dw~~~~~~~~~~~~~~~~fD~Ii~~------d~~y~~---------~~~-------~~l~~~l~~ll~~~~~~~~~~~~g  453 (523)
                      |..+...     .+.+++||+|++.      .++...         +.+       ..+++.+.++|         +|||
T Consensus       318 D~~~~~~-----~~~~~~fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~L---------kpGG  383 (450)
T 2yxl_A          318 DARKAPE-----IIGEEVADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLV---------KPGG  383 (450)
T ss_dssp             CTTCCSS-----SSCSSCEEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTE---------EEEE
T ss_pred             Chhhcch-----hhccCCCCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhc---------CCCc
Confidence            5443211     1223689999962      222211         122       56788888888         6799


Q ss_pred             EEEEEEeecCCC--hhHHHHHHHHc-CCEEEEEc
Q 009871          454 AFILCHIFRQVD--EPSMLSAATQC-GFRLVDKW  484 (523)
Q Consensus       454 ~~~l~~~~r~~~--~~~~~~~~~~~-gf~~~~~~  484 (523)
                      .++++...-...  +..+...++++ +|++..+.
T Consensus       384 ~lvy~tcs~~~~ene~~v~~~l~~~~~~~~~~~~  417 (450)
T 2yxl_A          384 RLLYTTCSIFKEENEKNIRWFLNVHPEFKLVPLK  417 (450)
T ss_dssp             EEEEEESCCCGGGTHHHHHHHHHHCSSCEECCCC
T ss_pred             EEEEEeCCCChhhHHHHHHHHHHhCCCCEEeecc
Confidence            998765543222  23344455665 78876554

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=98.91  E-value=6e-10  Score=111.39  Aligned_cols=78  Identities=22%  Similarity=0.365  Sum_probs=64.3

Q ss_pred             hhhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCcee
Q 009871           69 RYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSID  148 (523)
Q Consensus        69 ~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD  148 (523)
                      +.+....+.+|||+|||+|.++..+++.+|+.+|+|+|+|+.|++.|+++.......++++.+|+...      .+++||
T Consensus       190 ~~l~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~~------~~~~fD  263 (343)
T 2pjd_A          190 STLTPHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNVFSE------VKGRFD  263 (343)
T ss_dssp             HHSCTTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTT------CCSCEE
T ss_pred             HhcCcCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCEEEEcccccc------ccCCee
Confidence            33433456799999999999999999998888999999999999999998755545567888888643      367899


Q ss_pred             EEEE
Q 009871          149 IVTM  152 (523)
Q Consensus       149 ~V~~  152 (523)
                      +|++
T Consensus       264 ~Iv~  267 (343)
T 2pjd_A          264 MIIS  267 (343)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9999

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=98.91  E-value=3.9e-09  Score=98.43  Aligned_cols=127  Identities=13%  Similarity=0.077  Sum_probs=87.3

Q ss_pred             CCCeEEEECCCccHHHHHHHhc-CCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCC
Q 009871          335 AGKKVLELGCGCGGICSMVAAG-SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG  413 (523)
Q Consensus       335 ~~~~VLElG~G~G~l~~~~a~~-~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~  413 (523)
                      ...+|||||||+|.++..++.. ...+|+++|+|+.|++.++.|+..|++.     ..+...|....        .++.+
T Consensus       132 ~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~-----~~~~v~D~~~~--------~p~~~  198 (281)
T 3lcv_B          132 RPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVP-----HRTNVADLLED--------RLDEP  198 (281)
T ss_dssp             CCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCC-----EEEEECCTTTS--------CCCSC
T ss_pred             CCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCC-----ceEEEeeeccc--------CCCCC
Confidence            3569999999999888877776 5669999999999999999999998874     34444333322        24679


Q ss_pred             ccEEEEccccCCCC--ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec-----CCCh-----hHHHHHHHHcCCEEE
Q 009871          414 FEVILGTDVSYIPE--AILPLFATAKELTASSNKSLREDQQPAFILCHIFR-----QVDE-----PSMLSAATQCGFRLV  481 (523)
Q Consensus       414 fD~Ii~~d~~y~~~--~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r-----~~~~-----~~~~~~~~~~gf~~~  481 (523)
                      ||+|++..++.+-+  .-..++ .+.+.|         +++ .+++++..|     ....     ..|.+.+.+.|+.+.
T Consensus       199 ~DvaL~lkti~~Le~q~kg~g~-~ll~aL---------~~~-~vvVSfp~ksl~Grs~gm~~~Y~~~~e~~~~~~g~~~~  267 (281)
T 3lcv_B          199 ADVTLLLKTLPCLETQQRGSGW-EVIDIV---------NSP-NIVVTFPTKSLGQRSKGMFQNYSQSFESQARERSCRIQ  267 (281)
T ss_dssp             CSEEEETTCHHHHHHHSTTHHH-HHHHHS---------SCS-EEEEEEECC-------CHHHHHHHHHHHHHHHHTCCEE
T ss_pred             cchHHHHHHHHHhhhhhhHHHH-HHHHHh---------CCC-CEEEeccchhhcCCCcchhhHHHHHHHHHHHhcCCcee
Confidence            99999998877632  223445 455555         334 455666663     3333     234555677899877


Q ss_pred             EEcC
Q 009871          482 DKWP  485 (523)
Q Consensus       482 ~~~~  485 (523)
                      ++.-
T Consensus       268 ~~~~  271 (281)
T 3lcv_B          268 RLEI  271 (281)
T ss_dssp             EEEE
T ss_pred             eeee
Confidence            7643

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=98.89  E-value=6.9e-10  Score=104.54  Aligned_cols=78  Identities=15%  Similarity=0.216  Sum_probs=63.0

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCC--CcEEEEEeeccCCccCCCCCCCceeEEE
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQISPSSIDIVT  151 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~V~  151 (523)
                      .++.+|||||||+|..+..+++..|+.+|+|+|+|+.+++.|+++....+  .++++.++|+... ++....+++||+|+
T Consensus        53 ~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~~~~fD~I~  131 (233)
T 2gpy_A           53 AAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQL-GEKLELYPLFDVLF  131 (233)
T ss_dssp             HCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGS-HHHHTTSCCEEEEE
T ss_pred             cCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHH-HHhcccCCCccEEE
Confidence            46789999999999999999999888899999999999999999764332  4699999998753 11001157899999


Q ss_pred             E
Q 009871          152 M  152 (523)
Q Consensus       152 ~  152 (523)
                      +
T Consensus       132 ~  132 (233)
T 2gpy_A          132 I  132 (233)
T ss_dssp             E
T ss_pred             E
Confidence            8

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=98.89  E-value=7.9e-10  Score=107.80  Aligned_cols=75  Identities=19%  Similarity=0.218  Sum_probs=63.0

Q ss_pred             CCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC-CCcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871           76 RKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT-ETRVSTFVCDLISDDLSRQISPSSIDIVTM  152 (523)
Q Consensus        76 ~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~-~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~  152 (523)
                      ..+|||||||+|.++..+++++|+.+|++||+++.|++.|+++.... ..+++++++|+.+.  ...+++++||+|++
T Consensus        90 ~~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~--l~~~~~~~fDvIi~  165 (317)
T 3gjy_A           90 KLRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMV--AESFTPASRDVIIR  165 (317)
T ss_dssp             GCEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHH--HHTCCTTCEEEEEE
T ss_pred             CCEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHH--HhhccCCCCCEEEE
Confidence            34999999999999999999888899999999999999999986432 46899999998753  11234678999999

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=98.89  E-value=4.5e-08  Score=100.16  Aligned_cols=114  Identities=15%  Similarity=0.114  Sum_probs=82.1

Q ss_pred             hhHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeec
Q 009871          318 ESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEW  397 (523)
Q Consensus       318 ~~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw  397 (523)
                      ..+..|.+++..   ..++.+|||+|||+|.++..++.. +.+|+++|+++.|++.|++|+..|++    . +.+...|.
T Consensus       276 ~~~e~l~~~~~~---~~~~~~VLDlgcG~G~~sl~la~~-~~~V~gvD~s~~ai~~A~~n~~~ngl----~-v~~~~~d~  346 (425)
T 2jjq_A          276 YQAVNLVRKVSE---LVEGEKILDMYSGVGTFGIYLAKR-GFNVKGFDSNEFAIEMARRNVEINNV----D-AEFEVASD  346 (425)
T ss_dssp             HHHHHHHHHHHH---HCCSSEEEEETCTTTHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHHTC----C-EEEEECCT
T ss_pred             HHHHHHHHHhhc---cCCCCEEEEeeccchHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHHcCC----c-EEEEECCh
Confidence            344455555554   347789999999999888888776 46899999999999999999999876    2 56666555


Q ss_pred             CCCCcchhhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee
Q 009871          398 GNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIF  461 (523)
Q Consensus       398 ~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~  461 (523)
                      .+.         ...+||+|++... +. .....+++.+.. |         +|+|.+|++...
T Consensus       347 ~~~---------~~~~fD~Vv~dPP-r~-g~~~~~~~~l~~-l---------~p~givyvsc~p  389 (425)
T 2jjq_A          347 REV---------SVKGFDTVIVDPP-RA-GLHPRLVKRLNR-E---------KPGVIVYVSCNP  389 (425)
T ss_dssp             TTC---------CCTTCSEEEECCC-TT-CSCHHHHHHHHH-H---------CCSEEEEEESCH
T ss_pred             HHc---------CccCCCEEEEcCC-cc-chHHHHHHHHHh-c---------CCCcEEEEECCh
Confidence            432         1227999998533 32 233456777764 6         579999887543

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=98.89  E-value=5.1e-09  Score=101.65  Aligned_cols=79  Identities=24%  Similarity=0.300  Sum_probs=63.6

Q ss_pred             HHhhhhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCC--CcEEEEEeeccCCccCCCCC
Q 009871           66 EWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQIS  143 (523)
Q Consensus        66 ~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~  143 (523)
                      .+.+.+...++.+|||||||+|.++..|++.  +.+|+|+|+|+.|++.|+++....+  .+++++++|+.+.    +++
T Consensus        19 ~i~~~~~~~~~~~VLDiG~G~G~lt~~L~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~----~~~   92 (285)
T 1zq9_A           19 SIIDKAALRPTDVVLEVGPGTGNMTVKLLEK--AKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKT----DLP   92 (285)
T ss_dssp             HHHHHTCCCTTCEEEEECCTTSTTHHHHHHH--SSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTS----CCC
T ss_pred             HHHHhcCCCCCCEEEEEcCcccHHHHHHHhh--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecc----cch
Confidence            3334455567889999999999999999998  4579999999999999998764322  5799999999876    333


Q ss_pred             CCceeEEEE
Q 009871          144 PSSIDIVTM  152 (523)
Q Consensus       144 ~~~fD~V~~  152 (523)
                        +||+|++
T Consensus        93 --~fD~vv~   99 (285)
T 1zq9_A           93 --FFDTCVA   99 (285)
T ss_dssp             --CCSEEEE
T ss_pred             --hhcEEEE
Confidence              6999988

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=98.88  E-value=6.1e-10  Score=104.06  Aligned_cols=77  Identities=18%  Similarity=0.248  Sum_probs=62.0

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCC-CCEEEEEeCCHHHHHHHHhccccC--CCcEEEEEeeccCCccCCCCC---CCce
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYP-DVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISDDLSRQIS---PSSI  147 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~-~~~v~gvD~S~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~~~~~~~---~~~f  147 (523)
                      .++.+|||||||+|..+..+++..| +++|+|+|+|+.+++.|+++....  ..+++++++|+.+. ++ .++   .++|
T Consensus        57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~-~~~~~~~~~f  134 (223)
T 3duw_A           57 QGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDS-LQ-QIENEKYEPF  134 (223)
T ss_dssp             HTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHH-HH-HHHHTTCCCC
T ss_pred             hCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHH-HH-HHHhcCCCCc
Confidence            4678999999999999999999977 789999999999999999876432  24699999998642 10 011   2579


Q ss_pred             eEEEE
Q 009871          148 DIVTM  152 (523)
Q Consensus       148 D~V~~  152 (523)
                      |+|++
T Consensus       135 D~v~~  139 (223)
T 3duw_A          135 DFIFI  139 (223)
T ss_dssp             SEEEE
T ss_pred             CEEEE
Confidence            99998

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=98.88  E-value=3.1e-09  Score=105.31  Aligned_cols=120  Identities=14%  Similarity=0.030  Sum_probs=79.4

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCC-C--cEEEEEeeccCCccCCCCCCCceeEE
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE-T--RVSTFVCDLISDDLSRQISPSSIDIV  150 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~-~--~v~~~~~d~~~~~~~~~~~~~~fD~V  150 (523)
                      .++.+|||+|||+|.++..+++.+  ++|+|||+|+.|++.|+++...++ .  +++++++|+.+.........++||+|
T Consensus       152 ~~~~~VLDlgcGtG~~sl~la~~g--a~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~I  229 (332)
T 2igt_A          152 DRPLKVLNLFGYTGVASLVAAAAG--AEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDII  229 (332)
T ss_dssp             SSCCEEEEETCTTCHHHHHHHHTT--CEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEE
T ss_pred             CCCCcEEEcccccCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEE
Confidence            456799999999999999999874  489999999999999999875332 2  49999999975310000014689999


Q ss_pred             EE--ccccc--cc---------eeeec--ceEEecCCeEEEe------eCHHHHHHHHH----hCCCcEE
Q 009871          151 TM--ERLTG--KD---------QKISE--NFYVRGDGTRAFY------FSNDFLTSLFK----ENGFDVE  195 (523)
Q Consensus       151 ~~--~~~~~--~~---------~~~~~--~~~~~~~g~~~~~------~~~~~l~~ll~----~~Gf~~~  195 (523)
                      ++  ..+..  ..         ..+..  .-.++++|.+++.      .+.+.+.+++.    ++|+.+.
T Consensus       230 i~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~~~~~~~~~~~~~l~~a~~~~g~~v~  299 (332)
T 2igt_A          230 LTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYSIRASFYSMHELMRETMRGAGGVVA  299 (332)
T ss_dssp             EECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECCTTSCHHHHHHHHHHHTTTSCSEEE
T ss_pred             EECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECCCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence            99  11210  00         00000  1247888885442      24556666655    6787754

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=98.88  E-value=2.3e-09  Score=101.92  Aligned_cols=77  Identities=19%  Similarity=0.325  Sum_probs=55.3

Q ss_pred             hhhhHHHHhhhhcCCCCCeEEEECCCc--cccHHHHHhh-CCCCEEEEEeCCHHHHHHHHhccccC-CCcEEEEEeeccC
Q 009871           60 RHYLDKEWGRYFSGAGRKDVLEVGCGA--GNTIFPLIAA-YPDVFVYACDFSPRAVNLVMTHKDFT-ETRVSTFVCDLIS  135 (523)
Q Consensus        60 ~~~l~~~~~~~~~~~~~~~iLDiGcG~--G~~~~~l~~~-~~~~~v~gvD~S~~~l~~a~~~~~~~-~~~v~~~~~d~~~  135 (523)
                      |.|+.+....+.......+|||||||+  +.++..++++ .|+++|+|||.|+.||+.|+++.... ..++.|+++|+.+
T Consensus        63 r~fl~rav~~l~~~~g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~  142 (277)
T 3giw_A           63 RDWMNRAVAHLAKEAGIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLD  142 (277)
T ss_dssp             HHHHHHHHHHHHHTSCCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTC
T ss_pred             HHHHHHHHHHhccccCCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccC
Confidence            444444333333223457899999997  4455555554 78999999999999999999876432 2479999999986


Q ss_pred             C
Q 009871          136 D  136 (523)
Q Consensus       136 ~  136 (523)
                      .
T Consensus       143 ~  143 (277)
T 3giw_A          143 P  143 (277)
T ss_dssp             H
T ss_pred             h
Confidence            4

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=98.88  E-value=1.2e-09  Score=98.92  Aligned_cols=78  Identities=10%  Similarity=0.010  Sum_probs=60.9

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCC--CcEEEEEeeccCCccCCCCCCCceeEEE
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQISPSSIDIVT  151 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~V~  151 (523)
                      .++.+|||+|||+|..+..+++. +..+|+|+|+|+.|++.|+++.....  .+++++++|+.+.....++++++||+|+
T Consensus        43 ~~~~~vLD~GcG~G~~~~~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~  121 (187)
T 2fhp_A           43 FDGGMALDLYSGSGGLAIEAVSR-GMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVL  121 (187)
T ss_dssp             CSSCEEEETTCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred             cCCCCEEEeCCccCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEE
Confidence            46789999999999999988875 34689999999999999999764432  4799999998753100012267899999


Q ss_pred             E
Q 009871          152 M  152 (523)
Q Consensus       152 ~  152 (523)
                      +
T Consensus       122 ~  122 (187)
T 2fhp_A          122 L  122 (187)
T ss_dssp             E
T ss_pred             E
Confidence            8

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=98.88  E-value=3.1e-09  Score=97.42  Aligned_cols=68  Identities=22%  Similarity=0.241  Sum_probs=58.6

Q ss_pred             CCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871           73 GAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM  152 (523)
Q Consensus        73 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~  152 (523)
                      ..++.+|||+|||+|.++..+++. +..+|+|+|+|+.|++.|+++..    +++++++|+.++    +   ++||+|++
T Consensus        49 ~~~~~~vlD~gcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~----~~~~~~~d~~~~----~---~~~D~v~~  116 (200)
T 1ne2_A           49 NIGGRSVIDAGTGNGILACGSYLL-GAESVTAFDIDPDAIETAKRNCG----GVNFMVADVSEI----S---GKYDTWIM  116 (200)
T ss_dssp             SSBTSEEEEETCTTCHHHHHHHHT-TBSEEEEEESCHHHHHHHHHHCT----TSEEEECCGGGC----C---CCEEEEEE
T ss_pred             CCCCCEEEEEeCCccHHHHHHHHc-CCCEEEEEECCHHHHHHHHHhcC----CCEEEECcHHHC----C---CCeeEEEE
Confidence            346789999999999999999887 33479999999999999999864    689999999865    2   68999999

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=98.88  E-value=1.3e-08  Score=102.61  Aligned_cols=123  Identities=14%  Similarity=0.080  Sum_probs=92.1

Q ss_pred             CCCCCeEEEECCCccHHHHHHHhcCC-CEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcC
Q 009871          333 IVAGKKVLELGCGCGGICSMVAAGSA-DLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENN  411 (523)
Q Consensus       333 ~~~~~~VLElG~G~G~l~~~~a~~~~-~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~  411 (523)
                      ..++.+|||||||+|.++..+++..+ .+++++|+ +.+++.++.+          .++.+...|..+.        ++.
T Consensus       201 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------~~v~~~~~d~~~~--------~p~  261 (368)
T 3reo_A          201 FEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPAF----------SGVEHLGGDMFDG--------VPK  261 (368)
T ss_dssp             TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC----------TTEEEEECCTTTC--------CCC
T ss_pred             ccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhhc----------CCCEEEecCCCCC--------CCC
Confidence            45678999999999998888888754 48999999 8888766531          4677777766532        222


Q ss_pred             CCccEEEEccccCCCC--ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecC--------------------------
Q 009871          412 EGFEVILGTDVSYIPE--AILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ--------------------------  463 (523)
Q Consensus       412 ~~fD~Ii~~d~~y~~~--~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~--------------------------  463 (523)
                       . |+|++..++++..  ....+++.+.+.|         +|||.+++......                          
T Consensus       262 -~-D~v~~~~vlh~~~~~~~~~~l~~~~~~L---------~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g  330 (368)
T 3reo_A          262 -G-DAIFIKWICHDWSDEHCLKLLKNCYAAL---------PDHGKVIVAEYILPPSPDPSIATKVVIHTDALMLAYNPGG  330 (368)
T ss_dssp             -C-SEEEEESCGGGBCHHHHHHHHHHHHHHS---------CTTCEEEEEECCCCSSCCCCHHHHHHHHHHHHHHHHSSBC
T ss_pred             -C-CEEEEechhhcCCHHHHHHHHHHHHHHc---------CCCCEEEEEEeccCCCCCCchhhhHHHhhhHHHHhhcCCC
Confidence             3 9999999998654  3458899999999         77999988754321                          


Q ss_pred             --CChhHHHHHHHHcCCEEEEEcC
Q 009871          464 --VDEPSMLSAATQCGFRLVDKWP  485 (523)
Q Consensus       464 --~~~~~~~~~~~~~gf~~~~~~~  485 (523)
                        .+..++.+.++++||+..++..
T Consensus       331 ~~rt~~e~~~ll~~AGF~~v~~~~  354 (368)
T 3reo_A          331 KERTEKEFQALAMASGFRGFKVAS  354 (368)
T ss_dssp             CCCCHHHHHHHHHHTTCCEEEEEE
T ss_pred             ccCCHHHHHHHHHHCCCeeeEEEE
Confidence              1234567778899999988866

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=98.88  E-value=4.2e-09  Score=98.68  Aligned_cols=107  Identities=11%  Similarity=0.048  Sum_probs=76.8

Q ss_pred             CCCCCeEEEECCCccHHHHHHHhc-CC------CEEEEEcCChHHHHHHHHHHHhcCCC-CCCCceEEEeeecCCCCcch
Q 009871          333 IVAGKKVLELGCGCGGICSMVAAG-SA------DLVVATDGDSIALDLLAQNVTANLKP-PFLAKLITKRLEWGNRDHIE  404 (523)
Q Consensus       333 ~~~~~~VLElG~G~G~l~~~~a~~-~~------~~V~~~D~~~~~l~~~~~n~~~n~~~-~~~~~v~~~~ldw~~~~~~~  404 (523)
                      ..++.+|||+|||+|.++..++.. +.      .+|+++|+++.+++.+++|+..++.. ....++.+...|..+.  ..
T Consensus        82 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~--~~  159 (227)
T 1r18_A           82 LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKG--YP  159 (227)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGC--CG
T ss_pred             CCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcccC--CC
Confidence            357889999999999888888875 32      58999999999999999998765410 0003466665554431  10


Q ss_pred             hhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee
Q 009871          405 AIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIF  461 (523)
Q Consensus       405 ~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~  461 (523)
                           ..++||+|++...+.+      +.+.+.++|         +|||.+++....
T Consensus       160 -----~~~~fD~I~~~~~~~~------~~~~~~~~L---------kpgG~lvi~~~~  196 (227)
T 1r18_A          160 -----PNAPYNAIHVGAAAPD------TPTELINQL---------ASGGRLIVPVGP  196 (227)
T ss_dssp             -----GGCSEEEEEECSCBSS------CCHHHHHTE---------EEEEEEEEEESC
T ss_pred             -----cCCCccEEEECCchHH------HHHHHHHHh---------cCCCEEEEEEec
Confidence                 1258999999876654      237788889         679999987754

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=98.88  E-value=2.2e-09  Score=101.26  Aligned_cols=81  Identities=17%  Similarity=0.187  Sum_probs=63.4

Q ss_pred             HHhhhhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC-CCcEEEEEeeccCCccCCCCCC
Q 009871           66 EWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT-ETRVSTFVCDLISDDLSRQISP  144 (523)
Q Consensus        66 ~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~-~~~v~~~~~d~~~~~~~~~~~~  144 (523)
                      .+.+.+...++.+|||||||+|.++..+++..+ .+|+|+|+|+.+++.|+++.... ..++++.++|+. .    ++++
T Consensus        82 ~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~-~----~~~~  155 (235)
T 1jg1_A           82 IMLEIANLKPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGS-K----GFPP  155 (235)
T ss_dssp             HHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGG-G----CCGG
T ss_pred             HHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCcc-c----CCCC
Confidence            333445556788999999999999999999865 77999999999999999976432 246899999983 3    2333


Q ss_pred             -CceeEEEE
Q 009871          145 -SSIDIVTM  152 (523)
Q Consensus       145 -~~fD~V~~  152 (523)
                       ..||+|++
T Consensus       156 ~~~fD~Ii~  164 (235)
T 1jg1_A          156 KAPYDVIIV  164 (235)
T ss_dssp             GCCEEEEEE
T ss_pred             CCCccEEEE
Confidence             35999998

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=98.87  E-value=6.7e-10  Score=103.90  Aligned_cols=79  Identities=15%  Similarity=0.209  Sum_probs=61.9

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCC-CCEEEEEeCCHHHHHHHHhccccC--CCcEEEEEeeccCCc--cCCCCCCCcee
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYP-DVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISDD--LSRQISPSSID  148 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~-~~~v~gvD~S~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~--~~~~~~~~~fD  148 (523)
                      .++.+|||||||+|..+..+++..+ +.+|+|+|+|+.|++.|+++....  ..+++++++|+.+.-  +......++||
T Consensus        63 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD  142 (225)
T 3tr6_A           63 MQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYD  142 (225)
T ss_dssp             HTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEE
T ss_pred             hCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCcc
Confidence            3577999999999999999999876 789999999999999999976433  246999999986420  11011117899


Q ss_pred             EEEE
Q 009871          149 IVTM  152 (523)
Q Consensus       149 ~V~~  152 (523)
                      +|++
T Consensus       143 ~v~~  146 (225)
T 3tr6_A          143 LIYI  146 (225)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9987

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=98.87  E-value=3.9e-09  Score=98.46  Aligned_cols=74  Identities=19%  Similarity=0.251  Sum_probs=65.3

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM  152 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~  152 (523)
                      ....+|||||||.|-++..++...|..+|+|+|+++.|++.++++....+...++.+.|....     .+.+.||+|++
T Consensus       131 ~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~~~~-----~p~~~~DvaL~  204 (281)
T 3lcv_B          131 PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVPHRTNVADLLED-----RLDEPADVTLL  204 (281)
T ss_dssp             CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCCEEEEECCTTTS-----CCCSCCSEEEE
T ss_pred             CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEeeeccc-----CCCCCcchHHH
Confidence            457799999999999999999988999999999999999999999876667788999888754     35678999999

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=98.87  E-value=9.6e-09  Score=105.84  Aligned_cols=82  Identities=20%  Similarity=0.273  Sum_probs=65.5

Q ss_pred             hhhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCC-CcEEEEEeeccCCccCCCCCCCce
Q 009871           69 RYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQISPSSI  147 (523)
Q Consensus        69 ~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~f  147 (523)
                      +.+...++.+|||+|||+|.++..|++.  ..+|+|+|+|+.|++.|+++...++ .+++|+++|+.+.--..++++++|
T Consensus       280 ~~l~~~~~~~VLDlgcG~G~~~~~la~~--~~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~~~~~~~~f  357 (433)
T 1uwv_A          280 EWLDVQPEDRVLDLFCGMGNFTLPLATQ--AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGF  357 (433)
T ss_dssp             HHHTCCTTCEEEEESCTTTTTHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTCC
T ss_pred             HhhcCCCCCEEEECCCCCCHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhhhhhhcCCC
Confidence            3444456789999999999999999988  5689999999999999999875433 479999999986311113456789


Q ss_pred             eEEEE
Q 009871          148 DIVTM  152 (523)
Q Consensus       148 D~V~~  152 (523)
                      |+|++
T Consensus       358 D~Vv~  362 (433)
T 1uwv_A          358 DKVLL  362 (433)
T ss_dssp             SEEEE
T ss_pred             CEEEE
Confidence            99999

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=98.87  E-value=6.7e-09  Score=96.03  Aligned_cols=71  Identities=13%  Similarity=0.217  Sum_probs=61.9

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM  152 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~  152 (523)
                      ..+.+|||||||+|.++.+++   ++.+|+|+|+|+.|++.++++....+.+..+.++|....    + ++++||+|++
T Consensus       104 ~~p~~VLDlGCG~gpLal~~~---~~~~y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~~~~----~-~~~~~DvvLl  174 (253)
T 3frh_A          104 ETPRRVLDIACGLNPLALYER---GIASVWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCA----P-PAEAGDLALI  174 (253)
T ss_dssp             CCCSEEEEETCTTTHHHHHHT---TCSEEEEEESBHHHHHHHHHHHHHTTCEEEEEECCTTTS----C-CCCBCSEEEE
T ss_pred             CCCCeEEEecCCccHHHHHhc---cCCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEeecccC----C-CCCCcchHHH
Confidence            568899999999999998887   678999999999999999998766668889999999865    3 3458999988

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=98.86  E-value=4.4e-09  Score=102.03  Aligned_cols=133  Identities=13%  Similarity=0.068  Sum_probs=86.9

Q ss_pred             CCCeEEEECCCccHHHHHHHhcC-CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCC
Q 009871          335 AGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG  413 (523)
Q Consensus       335 ~~~~VLElG~G~G~l~~~~a~~~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~  413 (523)
                      ++++|||||||+|.++..+++.. ..+|+++|+++.+++.+++++..++......++.+...|..+     .+ ....++
T Consensus        78 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~-----~l-~~~~~~  151 (283)
T 2i7c_A           78 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASK-----FL-ENVTNT  151 (283)
T ss_dssp             SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHH-----HH-HHCCSC
T ss_pred             CCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHH-----HH-HhCCCC
Confidence            56899999999998888888764 569999999999999999987653211112456665544321     11 112568


Q ss_pred             ccEEEEcc--ccCCCCCh--HHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCCh---hHHHHHHHHcCCEEEEE
Q 009871          414 FEVILGTD--VSYIPEAI--LPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDE---PSMLSAATQCGFRLVDK  483 (523)
Q Consensus       414 fD~Ii~~d--~~y~~~~~--~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~---~~~~~~~~~~gf~~~~~  483 (523)
                      ||+|++.-  .......+  ..+++.+.++|         +|+|.+++.........   ..+.+.+++. |.....
T Consensus       152 fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L---------~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~-F~~v~~  218 (283)
T 2i7c_A          152 YDVIIVDSSDPIGPAETLFNQNFYEKIYNAL---------KPNGYCVAQCESLWIHVGTIKNMIGYAKKL-FKKVEY  218 (283)
T ss_dssp             EEEEEEECCCTTTGGGGGSSHHHHHHHHHHE---------EEEEEEEEECCCTTTCHHHHHHHHHHHHTT-CSEEEE
T ss_pred             ceEEEEcCCCCCCcchhhhHHHHHHHHHHhc---------CCCcEEEEECCCcccCHHHHHHHHHHHHHH-CCceEE
Confidence            99999832  11111122  68999999999         67999988754433333   2344555554 554444

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=98.86  E-value=1.9e-08  Score=101.43  Aligned_cols=72  Identities=22%  Similarity=0.183  Sum_probs=54.2

Q ss_pred             hHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeee
Q 009871          319 SAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLE  396 (523)
Q Consensus       319 ~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ld  396 (523)
                      .+..+..++.+.... .+.+|||||||+|.++..+|. ++.+|+++|+++.+++.|++|+..|++.    ++.+...|
T Consensus       198 ~~~~l~~~~~~~~~~-~~~~vLDl~cG~G~~~l~la~-~~~~V~gvd~~~~ai~~a~~n~~~ng~~----~v~~~~~d  269 (369)
T 3bt7_A          198 MNIQMLEWALDVTKG-SKGDLLELYCGNGNFSLALAR-NFDRVLATEIAKPSVAAAQYNIAANHID----NVQIIRMA  269 (369)
T ss_dssp             HHHHHHHHHHHHTTT-CCSEEEEESCTTSHHHHHHGG-GSSEEEEECCCHHHHHHHHHHHHHTTCC----SEEEECCC
T ss_pred             HHHHHHHHHHHHhhc-CCCEEEEccCCCCHHHHHHHh-cCCEEEEEECCHHHHHHHHHHHHHcCCC----ceEEEECC
Confidence            334555555544332 367899999999988887766 4678999999999999999999999873    45665443

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=98.86  E-value=7.6e-09  Score=103.76  Aligned_cols=122  Identities=11%  Similarity=0.072  Sum_probs=92.0

Q ss_pred             CCCCeEEEECCCccHHHHHHHhcC-CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCC
Q 009871          334 VAGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNE  412 (523)
Q Consensus       334 ~~~~~VLElG~G~G~l~~~~a~~~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~  412 (523)
                      .++.+|||||||+|.++..+++.. ..+|+++|+ +.+++.+++.          ..+.+...|..+.        + + 
T Consensus       187 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------~~v~~~~~d~~~~--------~-p-  245 (352)
T 1fp2_A          187 DGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSGS----------NNLTYVGGDMFTS--------I-P-  245 (352)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCB----------TTEEEEECCTTTC--------C-C-
T ss_pred             ccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhcccC----------CCcEEEeccccCC--------C-C-
Confidence            356799999999998888888774 458999999 9998877531          2367766655431        1 2 


Q ss_pred             CccEEEEccccCCCCChH--HHHHHHHHHhhccCCCCCCCC---CcEEEEEEeecCC-----------------------
Q 009871          413 GFEVILGTDVSYIPEAIL--PLFATAKELTASSNKSLREDQ---QPAFILCHIFRQV-----------------------  464 (523)
Q Consensus       413 ~fD~Ii~~d~~y~~~~~~--~l~~~l~~ll~~~~~~~~~~~---~g~~~l~~~~r~~-----------------------  464 (523)
                      .||+|+++.++++.....  .+++.+.++|         +|   ||.++++......                       
T Consensus       246 ~~D~v~~~~~lh~~~d~~~~~~l~~~~~~L---------~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~g  316 (352)
T 1fp2_A          246 NADAVLLKYILHNWTDKDCLRILKKCKEAV---------TNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMACLNG  316 (352)
T ss_dssp             CCSEEEEESCGGGSCHHHHHHHHHHHHHHH---------SGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGGGTC
T ss_pred             CccEEEeehhhccCCHHHHHHHHHHHHHhC---------CCCCCCcEEEEEEeecCCCCCccchhhhHhhccHHHHhccC
Confidence            499999999999877666  9999999999         67   9998887644221                       


Q ss_pred             ---ChhHHHHHHHHcCCEEEEEcC
Q 009871          465 ---DEPSMLSAATQCGFRLVDKWP  485 (523)
Q Consensus       465 ---~~~~~~~~~~~~gf~~~~~~~  485 (523)
                         +..++.+.++++||+..+++.
T Consensus       317 ~~~t~~e~~~ll~~aGf~~~~~~~  340 (352)
T 1fp2_A          317 KERNEEEWKKLFIEAGFQHYKISP  340 (352)
T ss_dssp             CCEEHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCCCHHHHHHHHHHCCCCeeEEEe
Confidence               124566778889999888765

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=98.86  E-value=1e-09  Score=101.51  Aligned_cols=75  Identities=21%  Similarity=0.074  Sum_probs=60.7

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCC-CCEEEEEeCCHHHHHHHHhccccC--CCcEEEEEeeccCCccCCCCCCCceeEE
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYP-DVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISDDLSRQISPSSIDIV  150 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~-~~~v~gvD~S~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~~~~~~~~~~fD~V  150 (523)
                      .++.+|||||||+|..+..+++..+ +.+|+|+|+|+.|++.|+++....  ..+++++++|+.+. +  +..++ ||+|
T Consensus        55 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~--~~~~~-fD~v  130 (210)
T 3c3p_A           55 KQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGI-A--AGQRD-IDIL  130 (210)
T ss_dssp             HCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHH-H--TTCCS-EEEE
T ss_pred             hCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHH-h--ccCCC-CCEE
Confidence            3567999999999999999999876 789999999999999999876432  24699999998642 1  22245 9999


Q ss_pred             EE
Q 009871          151 TM  152 (523)
Q Consensus       151 ~~  152 (523)
                      ++
T Consensus       131 ~~  132 (210)
T 3c3p_A          131 FM  132 (210)
T ss_dssp             EE
T ss_pred             EE
Confidence            87

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=98.86  E-value=4.4e-09  Score=104.15  Aligned_cols=111  Identities=14%  Similarity=0.081  Sum_probs=78.5

Q ss_pred             CCCeEEEECCCccHHHHHHHhcC-CCEEEEEcCChHHHHHHHHHHHhc--CCCCCCCceEEEeeecCCCCcchhhhhhcC
Q 009871          335 AGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTAN--LKPPFLAKLITKRLEWGNRDHIEAIKEENN  411 (523)
Q Consensus       335 ~~~~VLElG~G~G~l~~~~a~~~-~~~V~~~D~~~~~l~~~~~n~~~n--~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~  411 (523)
                      ..++|||||||+|.++..+++.. ..+|+++|+|+.+++.+++|+...  +..  ..++.+...|+.+.     +..+..
T Consensus       120 ~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~--~~rv~~~~~D~~~~-----l~~~~~  192 (334)
T 1xj5_A          120 NPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYE--DPRVNLVIGDGVAF-----LKNAAE  192 (334)
T ss_dssp             CCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGG--STTEEEEESCHHHH-----HHTSCT
T ss_pred             CCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccC--CCcEEEEECCHHHH-----HHhccC
Confidence            56799999999998888888774 469999999999999999998652  221  24677766554321     112234


Q ss_pred             CCccEEEEccc--cCCCCC--hHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee
Q 009871          412 EGFEVILGTDV--SYIPEA--ILPLFATAKELTASSNKSLREDQQPAFILCHIF  461 (523)
Q Consensus       412 ~~fD~Ii~~d~--~y~~~~--~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~  461 (523)
                      ++||+|++.-.  ......  ...+++.+.++|         +|||.+++....
T Consensus       193 ~~fDlIi~d~~~p~~~~~~l~~~~~l~~~~~~L---------kpgG~lv~~~~~  237 (334)
T 1xj5_A          193 GSYDAVIVDSSDPIGPAKELFEKPFFQSVARAL---------RPGGVVCTQAES  237 (334)
T ss_dssp             TCEEEEEECCCCTTSGGGGGGSHHHHHHHHHHE---------EEEEEEEEECCC
T ss_pred             CCccEEEECCCCccCcchhhhHHHHHHHHHHhc---------CCCcEEEEecCC
Confidence            68999998422  211121  478999999999         679999886433

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=98.86  E-value=7.7e-10  Score=98.51  Aligned_cols=76  Identities=13%  Similarity=0.039  Sum_probs=59.2

Q ss_pred             CCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871           75 GRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM  152 (523)
Q Consensus        75 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~  152 (523)
                      ++.+|||+|||+|.++..+++.++.  |+|+|+|+.|++.|+++......+++++++|+.+.....+..+++||+|++
T Consensus        41 ~~~~vLD~GcG~G~~~~~l~~~~~~--v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~  116 (171)
T 1ws6_A           41 RRGRFLDPFAGSGAVGLEAASEGWE--AVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFM  116 (171)
T ss_dssp             TCCEEEEETCSSCHHHHHHHHTTCE--EEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCCeEEEeCCCcCHHHHHHHHCCCe--EEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEE
Confidence            6789999999999999999998654  999999999999999976543337899999987520000011348999998

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=98.86  E-value=8.9e-09  Score=104.09  Aligned_cols=123  Identities=7%  Similarity=-0.020  Sum_probs=92.2

Q ss_pred             CCCCCeEEEECCCccHHHHHHHhcCC-CEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcC
Q 009871          333 IVAGKKVLELGCGCGGICSMVAAGSA-DLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENN  411 (523)
Q Consensus       333 ~~~~~~VLElG~G~G~l~~~~a~~~~-~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~  411 (523)
                      ..++.+|||||||+|.++..++..++ .+++++|+ +.+++.+++.          .++.+...|..+.        + +
T Consensus       207 ~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~----------~~v~~~~~d~~~~--------~-~  266 (372)
T 1fp1_D          207 FEGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPPL----------SGIEHVGGDMFAS--------V-P  266 (372)
T ss_dssp             TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC----------TTEEEEECCTTTC--------C-C
T ss_pred             cCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhhc----------CCCEEEeCCcccC--------C-C
Confidence            44678999999999998888888764 48999999 9888776531          3477776665431        1 2


Q ss_pred             CCccEEEEccccCCCCChH--HHHHHHHHHhhccCCCCCCCCCcEEEEEEeecC--------------------------
Q 009871          412 EGFEVILGTDVSYIPEAIL--PLFATAKELTASSNKSLREDQQPAFILCHIFRQ--------------------------  463 (523)
Q Consensus       412 ~~fD~Ii~~d~~y~~~~~~--~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~--------------------------  463 (523)
                       .||+|+++.++++.....  .+++.+.++|         +|||.++++.....                          
T Consensus       267 -~~D~v~~~~~lh~~~d~~~~~~l~~~~~~L---------~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  336 (372)
T 1fp1_D          267 -QGDAMILKAVCHNWSDEKCIEFLSNCHKAL---------SPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGR  336 (372)
T ss_dssp             -CEEEEEEESSGGGSCHHHHHHHHHHHHHHE---------EEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHSCC
T ss_pred             -CCCEEEEecccccCCHHHHHHHHHHHHHhc---------CCCCEEEEEEeccCCCCccchHHHHHHHhhHHHHhccCCc
Confidence             399999999999877666  9999999999         67999988743311                          


Q ss_pred             -CChhHHHHHHHHcCCEEEEEcC
Q 009871          464 -VDEPSMLSAATQCGFRLVDKWP  485 (523)
Q Consensus       464 -~~~~~~~~~~~~~gf~~~~~~~  485 (523)
                       .+..++.+.++++||++.+++.
T Consensus       337 ~~t~~e~~~ll~~aGf~~~~~~~  359 (372)
T 1fp1_D          337 ERTEKQYEKLSKLSGFSKFQVAC  359 (372)
T ss_dssp             CEEHHHHHHHHHHTTCSEEEEEE
T ss_pred             cCCHHHHHHHHHHCCCceEEEEE
Confidence             1223556677889999888766

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=98.85  E-value=1e-09  Score=104.39  Aligned_cols=77  Identities=17%  Similarity=0.234  Sum_probs=62.3

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCC-CCEEEEEeCCHHHHHHHHhccccCC--CcEEEEEeeccCCccCCCC-----CCC
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYP-DVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQI-----SPS  145 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~-~~~v~gvD~S~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~-----~~~  145 (523)
                      .++.+|||||||+|..+..+++..| +.+|+++|+|+.|++.|+++....+  .+++++++|+.+. ++ .+     +++
T Consensus        78 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~-l~-~l~~~~~~~~  155 (247)
T 1sui_A           78 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPV-LD-EMIKDEKNHG  155 (247)
T ss_dssp             TTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHH-HH-HHHHSGGGTT
T ss_pred             hCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHH-HH-HHHhccCCCC
Confidence            4678999999999999999999876 7899999999999999999764332  4799999998642 11 11     257


Q ss_pred             ceeEEEE
Q 009871          146 SIDIVTM  152 (523)
Q Consensus       146 ~fD~V~~  152 (523)
                      +||+|++
T Consensus       156 ~fD~V~~  162 (247)
T 1sui_A          156 SYDFIFV  162 (247)
T ss_dssp             CBSEEEE
T ss_pred             CEEEEEE
Confidence            8999987

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=98.84  E-value=1.3e-08  Score=99.25  Aligned_cols=130  Identities=13%  Similarity=0.081  Sum_probs=86.1

Q ss_pred             CCCeEEEECCCccHHHHHHHhc-CCCEEEEEcCChHHHHHHHHHHHh--cCCCCCCCceEEEeeecCCCCcchhhhhhcC
Q 009871          335 AGKKVLELGCGCGGICSMVAAG-SADLVVATDGDSIALDLLAQNVTA--NLKPPFLAKLITKRLEWGNRDHIEAIKEENN  411 (523)
Q Consensus       335 ~~~~VLElG~G~G~l~~~~a~~-~~~~V~~~D~~~~~l~~~~~n~~~--n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~  411 (523)
                      .+++|||||||+|.++..+++. +..+|+++|+|+.+++.+++|+..  ++..  ..++.+...|..+.     + ....
T Consensus        90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~--~~~v~~~~~D~~~~-----l-~~~~  161 (296)
T 1inl_A           90 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFD--DPRAEIVIANGAEY-----V-RKFK  161 (296)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGG--CTTEEEEESCHHHH-----G-GGCS
T ss_pred             CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccC--CCceEEEECcHHHH-----H-hhCC
Confidence            4579999999999988888887 457999999999999999999754  2221  24566665443211     1 1124


Q ss_pred             CCccEEEEccccCC-CC-----ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCCh---hHHHHHHHHcCCEEEE
Q 009871          412 EGFEVILGTDVSYI-PE-----AILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDE---PSMLSAATQCGFRLVD  482 (523)
Q Consensus       412 ~~fD~Ii~~d~~y~-~~-----~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~---~~~~~~~~~~gf~~~~  482 (523)
                      ++||+|++. +... ..     ....+++.+.++|         +|||.+++.........   ..+.+.+++. |....
T Consensus       162 ~~fD~Ii~d-~~~~~~~~~~~l~~~~~l~~~~~~L---------kpgG~lv~~~~~~~~~~~~~~~~~~~l~~~-F~~v~  230 (296)
T 1inl_A          162 NEFDVIIID-STDPTAGQGGHLFTEEFYQACYDAL---------KEDGVFSAETEDPFYDIGWFKLAYRRISKV-FPITR  230 (296)
T ss_dssp             SCEEEEEEE-C----------CCSHHHHHHHHHHE---------EEEEEEEEECCCTTTTHHHHHHHHHHHHHH-CSEEE
T ss_pred             CCceEEEEc-CCCcccCchhhhhHHHHHHHHHHhc---------CCCcEEEEEccCcccCHHHHHHHHHHHHHH-CCceE
Confidence            689999973 3221 11     2378899999999         67999988644322222   3455666666 44333


Q ss_pred             E
Q 009871          483 K  483 (523)
Q Consensus       483 ~  483 (523)
                      .
T Consensus       231 ~  231 (296)
T 1inl_A          231 V  231 (296)
T ss_dssp             E
T ss_pred             E
Confidence            3

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=98.84  E-value=5.5e-09  Score=102.12  Aligned_cols=78  Identities=22%  Similarity=0.266  Sum_probs=59.4

Q ss_pred             HhhhhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC-CCcEEEEEeeccCCccCCCCCCC
Q 009871           67 WGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT-ETRVSTFVCDLISDDLSRQISPS  145 (523)
Q Consensus        67 ~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~-~~~v~~~~~d~~~~~~~~~~~~~  145 (523)
                      +.+.+...++.+|||||||+|.++..|++.  +.+|+|+|+|+.|++.|+++.... ..+++++++|+.+.    ++  .
T Consensus        34 i~~~~~~~~~~~VLDiG~G~G~lt~~La~~--~~~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~----~~--~  105 (299)
T 2h1r_A           34 IIYAAKIKSSDIVLEIGCGTGNLTVKLLPL--AKKVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKT----VF--P  105 (299)
T ss_dssp             HHHHHCCCTTCEEEEECCTTSTTHHHHTTT--SSEEEEECSCHHHHHHHHHHHHHTTCCCEEC----CCSS----CC--C
T ss_pred             HHHhcCCCCcCEEEEEcCcCcHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECchhhC----Cc--c
Confidence            334455567889999999999999999987  567999999999999999876422 25799999999865    22  3


Q ss_pred             ceeEEEE
Q 009871          146 SIDIVTM  152 (523)
Q Consensus       146 ~fD~V~~  152 (523)
                      +||+|++
T Consensus       106 ~~D~Vv~  112 (299)
T 2h1r_A          106 KFDVCTA  112 (299)
T ss_dssp             CCSEEEE
T ss_pred             cCCEEEE
Confidence            7999987

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=98.84  E-value=3.3e-09  Score=102.92  Aligned_cols=71  Identities=20%  Similarity=0.345  Sum_probs=60.9

Q ss_pred             CCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCC--CcEEEEEeeccCCccCCCCCCCce---eE
Q 009871           75 GRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQISPSSI---DI  149 (523)
Q Consensus        75 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~f---D~  149 (523)
                      ++.+|||+|||+|.++..+++. |+++|+|+|+|+.|++.|+++....+  .+++++++|+.+.     ++ ++|   |+
T Consensus       123 ~~~~vLDlG~GsG~~~~~la~~-~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~-----~~-~~f~~~D~  195 (284)
T 1nv8_A          123 GIKTVADIGTGSGAIGVSVAKF-SDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEP-----FK-EKFASIEM  195 (284)
T ss_dssp             TCCEEEEESCTTSHHHHHHHHH-SSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGG-----GG-GGTTTCCE
T ss_pred             CCCEEEEEeCchhHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhh-----cc-cccCCCCE
Confidence            5679999999999999999999 88999999999999999999875433  3599999999752     22 478   99


Q ss_pred             EEE
Q 009871          150 VTM  152 (523)
Q Consensus       150 V~~  152 (523)
                      |++
T Consensus       196 Ivs  198 (284)
T 1nv8_A          196 ILS  198 (284)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            999

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=98.83  E-value=2e-09  Score=107.21  Aligned_cols=67  Identities=24%  Similarity=0.344  Sum_probs=54.6

Q ss_pred             CCCCeEEEECCC------ccccHHHHHhh-CCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCC---
Q 009871           74 AGRKDVLEVGCG------AGNTIFPLIAA-YPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQIS---  143 (523)
Q Consensus        74 ~~~~~iLDiGcG------~G~~~~~l~~~-~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~---  143 (523)
                      .++.+|||||||      +|..+..+++. +|+++|+|||+|+.|.    .    ...+++++++|+.++    ++.   
T Consensus       215 ~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~----~----~~~rI~fv~GDa~dl----pf~~~l  282 (419)
T 3sso_A          215 NQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH----V----DELRIRTIQGDQNDA----EFLDRI  282 (419)
T ss_dssp             TSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG----G----CBTTEEEEECCTTCH----HHHHHH
T ss_pred             CCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh----h----cCCCcEEEEeccccc----chhhhh
Confidence            357899999999      77777777766 6889999999999983    1    236799999999876    444   


Q ss_pred             ---CCceeEEEE
Q 009871          144 ---PSSIDIVTM  152 (523)
Q Consensus       144 ---~~~fD~V~~  152 (523)
                         +++||+|++
T Consensus       283 ~~~d~sFDlVis  294 (419)
T 3sso_A          283 ARRYGPFDIVID  294 (419)
T ss_dssp             HHHHCCEEEEEE
T ss_pred             hcccCCccEEEE
Confidence               689999988

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=98.83  E-value=2.2e-08  Score=103.92  Aligned_cols=139  Identities=15%  Similarity=0.112  Sum_probs=91.7

Q ss_pred             hhHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcC--CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEee
Q 009871          318 ESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGS--ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRL  395 (523)
Q Consensus       318 ~~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l  395 (523)
                      .++.+++..+...  ..++.+|||+|||+|+.+..+|+..  ...|+++|+++.+++.+++|++.+++.    ++.+...
T Consensus       102 ~~s~l~~~~L~~~--~~~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~----nv~~~~~  175 (479)
T 2frx_A          102 ASSMLPVAALFAD--GNAPQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGIS----NVALTHF  175 (479)
T ss_dssp             HHHHHHHHHHTTT--TCCCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCC----SEEEECC
T ss_pred             HHHHHHHHHhCcc--cCCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC----cEEEEeC
Confidence            4455556666322  1267899999999999999888863  368999999999999999999998763    3555544


Q ss_pred             ecCCCCcchhhhhhcCCCccEEEEccc------cC-CCCC---------------hHHHHHHHHHHhhccCCCCCCCCCc
Q 009871          396 EWGNRDHIEAIKEENNEGFEVILGTDV------SY-IPEA---------------ILPLFATAKELTASSNKSLREDQQP  453 (523)
Q Consensus       396 dw~~~~~~~~~~~~~~~~fD~Ii~~d~------~y-~~~~---------------~~~l~~~l~~ll~~~~~~~~~~~~g  453 (523)
                      |..+   +   ....+++||+|++...      +. +++.               ...+++.+.++|         +|||
T Consensus       176 D~~~---~---~~~~~~~fD~Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~L---------kpGG  240 (479)
T 2frx_A          176 DGRV---F---GAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL---------RPGG  240 (479)
T ss_dssp             CSTT---H---HHHSTTCEEEEEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHE---------EEEE
T ss_pred             CHHH---h---hhhccccCCEEEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhc---------CCCC
Confidence            4322   1   1113468999997321      11 1111               246788888899         6799


Q ss_pred             EEEEEEeecCCC--hhHHHHHHHHcC
Q 009871          454 AFILCHIFRQVD--EPSMLSAATQCG  477 (523)
Q Consensus       454 ~~~l~~~~r~~~--~~~~~~~~~~~g  477 (523)
                      .++++...-...  +..+...+++++
T Consensus       241 ~LvysTcs~~~~Ene~vv~~~l~~~~  266 (479)
T 2frx_A          241 TLVYSTCTLNQEENEAVCLWLKETYP  266 (479)
T ss_dssp             EEEEEESCCSSTTTHHHHHHHHHHST
T ss_pred             EEEEecccCCcccCHHHHHHHHHHCC
Confidence            998876543322  223344455664

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=98.83  E-value=7.9e-09  Score=92.18  Aligned_cols=113  Identities=15%  Similarity=0.205  Sum_probs=75.1

Q ss_pred             CCCCeEEEECCCccccHHHHHhh-CCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCc----cCCCCCCCcee
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAA-YPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDD----LSRQISPSSID  148 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~-~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~----~~~~~~~~~fD  148 (523)
                      .++.+|||+|||+|..+..+++. .++.+|+|+|+|+ |++.         .++++.++|+.+.+    ++..+++++||
T Consensus        21 ~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~---------~~~~~~~~d~~~~~~~~~~~~~~~~~~~D   90 (180)
T 1ej0_A           21 KPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI---------VGVDFLQGDFRDELVMKALLERVGDSKVQ   90 (180)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC---------TTEEEEESCTTSHHHHHHHHHHHTTCCEE
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc---------CcEEEEEcccccchhhhhhhccCCCCcee
Confidence            56789999999999999999998 5678999999999 7532         46899999998652    00005678999


Q ss_pred             EEEEcc---cccc------------ceeeec-ceEEecCCeEEEe-e---CHHHHHHHHHhCCCcEEEE
Q 009871          149 IVTMER---LTGK------------DQKISE-NFYVRGDGTRAFY-F---SNDFLTSLFKENGFDVEEL  197 (523)
Q Consensus       149 ~V~~~~---~~~~------------~~~~~~-~~~~~~~g~~~~~-~---~~~~l~~ll~~~Gf~~~~~  197 (523)
                      +|++..   ....            ...+.. .-.++++|.++.. +   ...++...+... |..+.+
T Consensus        91 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~-~~~~~~  158 (180)
T 1ej0_A           91 VVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSL-FTKVKV  158 (180)
T ss_dssp             EEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTTHHHHHHHHHHH-EEEEEE
T ss_pred             EEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecCCcHHHHHHHHHHh-hhhEEe
Confidence            999911   1000            000100 1257788877653 2   455667777663 655443

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=98.83  E-value=7e-09  Score=99.77  Aligned_cols=108  Identities=13%  Similarity=0.051  Sum_probs=77.3

Q ss_pred             HHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcC-CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCC
Q 009871          322 LMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNR  400 (523)
Q Consensus       322 ~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~  400 (523)
                      .+.+++..... .++.+|||+|||+|.++..++... ..+|+++|+++.+++.++++.         .++.+...|+.+.
T Consensus        73 ~~~~~~~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~---------~~~~~~~~d~~~~  142 (269)
T 1p91_A           73 AIVAQLRERLD-DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY---------PQVTFCVASSHRL  142 (269)
T ss_dssp             HHHHHHHHHSC-TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC---------TTSEEEECCTTSC
T ss_pred             HHHHHHHHhcC-CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhC---------CCcEEEEcchhhC
Confidence            34455543221 367899999999998888888773 568999999999999998763         2345555554432


Q ss_pred             CcchhhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec
Q 009871          401 DHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFR  462 (523)
Q Consensus       401 ~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r  462 (523)
                             ++.+++||+|++..+       ...++.+.++|         +|||.+++.....
T Consensus       143 -------~~~~~~fD~v~~~~~-------~~~l~~~~~~L---------~pgG~l~~~~~~~  181 (269)
T 1p91_A          143 -------PFSDTSMDAIIRIYA-------PCKAEELARVV---------KPGGWVITATPGP  181 (269)
T ss_dssp             -------SBCTTCEEEEEEESC-------CCCHHHHHHHE---------EEEEEEEEEEECT
T ss_pred             -------CCCCCceeEEEEeCC-------hhhHHHHHHhc---------CCCcEEEEEEcCH
Confidence                   234568999998754       23578899999         6799998877653

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=98.82  E-value=3.2e-08  Score=95.87  Aligned_cols=130  Identities=18%  Similarity=0.092  Sum_probs=84.5

Q ss_pred             CCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCC-------CCCceEEEeeecCCCCcchhhh
Q 009871          335 AGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPP-------FLAKLITKRLEWGNRDHIEAIK  407 (523)
Q Consensus       335 ~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~-------~~~~v~~~~ldw~~~~~~~~~~  407 (523)
                      .+++|||||||+|.++..+++.+..+|+++|+|+.+++.+++|+ ......       ...++.+...|..     .-+.
T Consensus        75 ~~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~-----~~l~  148 (281)
T 1mjf_A           75 KPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGF-----EFIK  148 (281)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHH-----HHHH
T ss_pred             CCCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchH-----HHhc
Confidence            56799999999998888888876669999999999999999988 321000       1245666543321     1111


Q ss_pred             hhcCCCccEEEEccccCCC---CC--hHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCCh---hHHHHHHHHcCCE
Q 009871          408 EENNEGFEVILGTDVSYIP---EA--ILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDE---PSMLSAATQCGFR  479 (523)
Q Consensus       408 ~~~~~~fD~Ii~~d~~y~~---~~--~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~---~~~~~~~~~~gf~  479 (523)
                      .  .++||+|++. .....   ..  ...+++.+.++|         +|||.+++.........   ..+.+.+++. |.
T Consensus       149 ~--~~~fD~Ii~d-~~~~~~~~~~l~~~~~l~~~~~~L---------~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~-f~  215 (281)
T 1mjf_A          149 N--NRGFDVIIAD-STDPVGPAKVLFSEEFYRYVYDAL---------NNPGIYVTQAGSVYLFTDELISAYKEMKKV-FD  215 (281)
T ss_dssp             H--CCCEEEEEEE-CCCCC-----TTSHHHHHHHHHHE---------EEEEEEEEEEEETTTSHHHHHHHHHHHHHH-CS
T ss_pred             c--cCCeeEEEEC-CCCCCCcchhhhHHHHHHHHHHhc---------CCCcEEEEEcCCcccCHHHHHHHHHHHHHH-CC
Confidence            1  5689999984 33221   12  377899999999         67999988654322222   2344455554 54


Q ss_pred             EEEE
Q 009871          480 LVDK  483 (523)
Q Consensus       480 ~~~~  483 (523)
                      ....
T Consensus       216 ~v~~  219 (281)
T 1mjf_A          216 RVYY  219 (281)
T ss_dssp             EEEE
T ss_pred             ceEE
Confidence            4444

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=98.82  E-value=7.6e-09  Score=104.60  Aligned_cols=74  Identities=18%  Similarity=0.168  Sum_probs=61.8

Q ss_pred             cCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC--CCcEEEEEeeccCCccCCCCCCCceeE
Q 009871           72 SGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISDDLSRQISPSSIDI  149 (523)
Q Consensus        72 ~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~~~~~~~~~~fD~  149 (523)
                      ...++.+|||||||+|.++..+++.+ ..+|+|+|+| .|++.|+++....  ..+++++++|+.+.    +++ ++||+
T Consensus        60 ~~~~~~~VLDlGcGtG~ls~~la~~g-~~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~~~-~~~D~  132 (376)
T 3r0q_C           60 HHFEGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVEDI----SLP-EKVDV  132 (376)
T ss_dssp             TTTTTCEEEEESCTTTHHHHHHHHTT-CSEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGC----CCS-SCEEE
T ss_pred             ccCCCCEEEEeccCcCHHHHHHHhcC-CCEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhhc----CcC-CcceE
Confidence            34578899999999999999999884 2389999999 9999999876543  25699999999877    344 78999


Q ss_pred             EEE
Q 009871          150 VTM  152 (523)
Q Consensus       150 V~~  152 (523)
                      |++
T Consensus       133 Iv~  135 (376)
T 3r0q_C          133 IIS  135 (376)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            998

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=98.82  E-value=2.3e-08  Score=100.58  Aligned_cols=130  Identities=15%  Similarity=0.057  Sum_probs=94.8

Q ss_pred             HHhcCCCCCCCCeEEEECCCccHHHHHHHhcC-CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcch
Q 009871          326 VLARNPTIVAGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIE  404 (523)
Q Consensus       326 ~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~  404 (523)
                      ++...+...++.+|||||||+|.++..+++.. ..+++++|+ +.+++.++.          ..++.+...|..+.    
T Consensus       192 ~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~D~~~~----  256 (364)
T 3p9c_A          192 LLELYHGFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQ----------FPGVTHVGGDMFKE----  256 (364)
T ss_dssp             HHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC----------CTTEEEEECCTTTC----
T ss_pred             HHHhcccccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhh----------cCCeEEEeCCcCCC----
Confidence            33333334467899999999999888888875 348999999 888876653          14678877776542    


Q ss_pred             hhhhhcCCCccEEEEccccCCC--CChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecC-------------------
Q 009871          405 AIKEENNEGFEVILGTDVSYIP--EAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ-------------------  463 (523)
Q Consensus       405 ~~~~~~~~~fD~Ii~~d~~y~~--~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~-------------------  463 (523)
                          ++. . |+|++..++++.  +....+++.+.+.|         +|||.+++......                   
T Consensus       257 ----~p~-~-D~v~~~~vlh~~~d~~~~~~L~~~~~~L---------~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m  321 (364)
T 3p9c_A          257 ----VPS-G-DTILMKWILHDWSDQHCATLLKNCYDAL---------PAHGKVVLVQCILPVNPEANPSSQGVFHVDMIM  321 (364)
T ss_dssp             ----CCC-C-SEEEEESCGGGSCHHHHHHHHHHHHHHS---------CTTCEEEEEECCBCSSCCSSHHHHHHHHHHHHH
T ss_pred             ----CCC-C-CEEEehHHhccCCHHHHHHHHHHHHHHc---------CCCCEEEEEEeccCCCCCcchhhhhHHHhHHHH
Confidence                222 3 999999999865  44668999999999         77999988654321                   


Q ss_pred             ---------CChhHHHHHHHHcCCEEEEEcC
Q 009871          464 ---------VDEPSMLSAATQCGFRLVDKWP  485 (523)
Q Consensus       464 ---------~~~~~~~~~~~~~gf~~~~~~~  485 (523)
                               .+..++.+.++++||+..++..
T Consensus       322 ~~~~~~g~~rt~~e~~~ll~~AGF~~v~~~~  352 (364)
T 3p9c_A          322 LAHNPGGRERYEREFQALARGAGFTGVKSTY  352 (364)
T ss_dssp             HHHCSSCCCCBHHHHHHHHHHTTCCEEEEEE
T ss_pred             HhcccCCccCCHHHHHHHHHHCCCceEEEEE
Confidence                     1134566778899999988876

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=98.82  E-value=1.5e-08  Score=93.77  Aligned_cols=103  Identities=13%  Similarity=0.043  Sum_probs=71.1

Q ss_pred             CCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCc
Q 009871          335 AGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGF  414 (523)
Q Consensus       335 ~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~f  414 (523)
                      +..+|||||||+|.++..+.  +..+|+++|+|+.+++.+++++..++..     ..+...|....        .++++|
T Consensus       105 ~p~~VLDlGCG~gpLal~~~--~~~~y~a~DId~~~i~~ar~~~~~~g~~-----~~~~v~D~~~~--------~~~~~~  169 (253)
T 3frh_A          105 TPRRVLDIACGLNPLALYER--GIASVWGCDIHQGLGDVITPFAREKDWD-----FTFALQDVLCA--------PPAEAG  169 (253)
T ss_dssp             CCSEEEEETCTTTHHHHHHT--TCSEEEEEESBHHHHHHHHHHHHHTTCE-----EEEEECCTTTS--------CCCCBC
T ss_pred             CCCeEEEecCCccHHHHHhc--cCCeEEEEeCCHHHHHHHHHHHHhcCCC-----ceEEEeecccC--------CCCCCc
Confidence            56799999999997766655  6779999999999999999999987643     34444443322        235699


Q ss_pred             cEEEEccccCCCC--ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecC
Q 009871          415 EVILGTDVSYIPE--AILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ  463 (523)
Q Consensus       415 D~Ii~~d~~y~~~--~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~  463 (523)
                      |+|++..++.+-+  .-..+++.+ +.|         + .+.++++.+.|.
T Consensus       170 DvvLllk~lh~LE~q~~~~~~~ll-~aL---------~-~~~vvVsfPtks  209 (253)
T 3frh_A          170 DLALIFKLLPLLEREQAGSAMALL-QSL---------N-TPRMAVSFPTRS  209 (253)
T ss_dssp             SEEEEESCHHHHHHHSTTHHHHHH-HHC---------B-CSEEEEEEECC-
T ss_pred             chHHHHHHHHHhhhhchhhHHHHH-HHh---------c-CCCEEEEcChHH
Confidence            9999998776622  222344333 355         2 346667777554

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=98.82  E-value=6.2e-09  Score=104.22  Aligned_cols=71  Identities=25%  Similarity=0.256  Sum_probs=58.3

Q ss_pred             CCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC--CCcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871           75 GRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISDDLSRQISPSSIDIVTM  152 (523)
Q Consensus        75 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~  152 (523)
                      ++++|||||||+|.++..+++.+ ..+|+|||.|+ |++.|++....+  ..+++++++|++++++    + ++||+|++
T Consensus        83 ~~k~VLDvG~GtGiLs~~Aa~aG-A~~V~ave~s~-~~~~a~~~~~~n~~~~~i~~i~~~~~~~~l----p-e~~Dvivs  155 (376)
T 4hc4_A           83 RGKTVLDVGAGTGILSIFCAQAG-ARRVYAVEASA-IWQQAREVVRFNGLEDRVHVLPGPVETVEL----P-EQVDAIVS  155 (376)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTT-CSEEEEEECST-THHHHHHHHHHTTCTTTEEEEESCTTTCCC----S-SCEEEEEC
T ss_pred             CCCEEEEeCCCccHHHHHHHHhC-CCEEEEEeChH-HHHHHHHHHHHcCCCceEEEEeeeeeeecC----C-ccccEEEe
Confidence            57899999999999998777764 35799999996 889998876443  3679999999998743    3 57999999

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=98.82  E-value=3e-10  Score=107.69  Aligned_cols=77  Identities=19%  Similarity=0.267  Sum_probs=62.2

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCC-CCEEEEEeCCHHHHHHHHhccccC--CCcEEEEEeeccCCccCCCC----CCCc
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYP-DVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISDDLSRQI----SPSS  146 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~-~~~v~gvD~S~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~~~~~~----~~~~  146 (523)
                      .++.+|||||||+|..+..+++..+ +++|+|+|+|+.|++.|+++....  ..+++++++|+.+. ++ .+    .+++
T Consensus        59 ~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~-l~-~~~~~~~~~~  136 (242)
T 3r3h_A           59 TRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDT-LH-SLLNEGGEHQ  136 (242)
T ss_dssp             HTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHH-HH-HHHHHHCSSC
T ss_pred             cCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHH-HH-HHhhccCCCC
Confidence            4578999999999999999999865 789999999999999999876433  25799999998653 11 01    1478


Q ss_pred             eeEEEE
Q 009871          147 IDIVTM  152 (523)
Q Consensus       147 fD~V~~  152 (523)
                      ||+|++
T Consensus       137 fD~V~~  142 (242)
T 3r3h_A          137 FDFIFI  142 (242)
T ss_dssp             EEEEEE
T ss_pred             EeEEEE
Confidence            999988

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=98.80  E-value=8.6e-09  Score=98.76  Aligned_cols=89  Identities=17%  Similarity=0.067  Sum_probs=66.3

Q ss_pred             ccccchhhhHHHHhhhhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeecc
Q 009871           55 RFFKDRHYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLI  134 (523)
Q Consensus        55 ~f~~~~~~l~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~  134 (523)
                      +|..+...+ ..+-+.+...++ +|||||||+|.++..|++..  .+|+|+|+++.|++.++++..  ..+++++++|+.
T Consensus        28 nfL~d~~i~-~~Iv~~~~~~~~-~VLEIG~G~G~lt~~L~~~~--~~V~avEid~~~~~~l~~~~~--~~~v~vi~~D~l  101 (271)
T 3fut_A           28 NFLVSEAHL-RRIVEAARPFTG-PVFEVGPGLGALTRALLEAG--AEVTAIEKDLRLRPVLEETLS--GLPVRLVFQDAL  101 (271)
T ss_dssp             CEECCHHHH-HHHHHHHCCCCS-CEEEECCTTSHHHHHHHHTT--CCEEEEESCGGGHHHHHHHTT--TSSEEEEESCGG
T ss_pred             cccCCHHHH-HHHHHhcCCCCC-eEEEEeCchHHHHHHHHHcC--CEEEEEECCHHHHHHHHHhcC--CCCEEEEECChh
Confidence            344444443 333344444567 99999999999999999984  569999999999999998764  257999999999


Q ss_pred             CCccCCCCCCCceeEEEE
Q 009871          135 SDDLSRQISPSSIDIVTM  152 (523)
Q Consensus       135 ~~~~~~~~~~~~fD~V~~  152 (523)
                      +.+++.   ...+|.|++
T Consensus       102 ~~~~~~---~~~~~~iv~  116 (271)
T 3fut_A          102 LYPWEE---VPQGSLLVA  116 (271)
T ss_dssp             GSCGGG---SCTTEEEEE
T ss_pred             hCChhh---ccCccEEEe
Confidence            874432   125788866

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=98.80  E-value=3.6e-09  Score=99.12  Aligned_cols=75  Identities=12%  Similarity=0.120  Sum_probs=60.7

Q ss_pred             CCCCCeEEEECCCccccHHHHHhhCC------CCEEEEEeCCHHHHHHHHhccccC------CCcEEEEEeeccCCccCC
Q 009871           73 GAGRKDVLEVGCGAGNTIFPLIAAYP------DVFVYACDFSPRAVNLVMTHKDFT------ETRVSTFVCDLISDDLSR  140 (523)
Q Consensus        73 ~~~~~~iLDiGcG~G~~~~~l~~~~~------~~~v~gvD~S~~~l~~a~~~~~~~------~~~v~~~~~d~~~~~~~~  140 (523)
                      ..++.+|||||||+|..+..+++..+      ..+|+|+|+|+.+++.|+++....      ..++++.++|+...    
T Consensus        82 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~----  157 (227)
T 1r18_A           82 LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKG----  157 (227)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGC----
T ss_pred             CCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcccC----
Confidence            35678999999999999999988643      258999999999999999876432      35799999999752    


Q ss_pred             CCCC-CceeEEEE
Q 009871          141 QISP-SSIDIVTM  152 (523)
Q Consensus       141 ~~~~-~~fD~V~~  152 (523)
                       +++ ++||+|++
T Consensus       158 -~~~~~~fD~I~~  169 (227)
T 1r18_A          158 -YPPNAPYNAIHV  169 (227)
T ss_dssp             -CGGGCSEEEEEE
T ss_pred             -CCcCCCccEEEE
Confidence             233 78999988

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=98.80  E-value=1.8e-08  Score=100.69  Aligned_cols=75  Identities=21%  Similarity=0.252  Sum_probs=60.7

Q ss_pred             hcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCC--CcEEEEEeeccCCccCCCCCCCcee
Q 009871           71 FSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQISPSSID  148 (523)
Q Consensus        71 ~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD  148 (523)
                      +...++.+|||||||+|.++..+++.+ ..+|+|+|+|+ |++.|+++....+  .+++++++|+.+.    +++ ++||
T Consensus        46 l~~~~~~~VLDiGcGtG~ls~~la~~g-~~~V~~vD~s~-~~~~a~~~~~~~~l~~~v~~~~~d~~~~----~~~-~~~D  118 (348)
T 2y1w_A           46 HTDFKDKIVLDVGCGSGILSFFAAQAG-ARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEV----SLP-EQVD  118 (348)
T ss_dssp             GGGTTTCEEEEETCTTSHHHHHHHHTT-CSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTC----CCS-SCEE
T ss_pred             cccCCcCEEEEcCCCccHHHHHHHhCC-CCEEEEECCHH-HHHHHHHHHHHcCCCCcEEEEEcchhhC----CCC-Ccee
Confidence            333578899999999999999988863 46899999996 8899988764332  6799999999876    333 5799


Q ss_pred             EEEE
Q 009871          149 IVTM  152 (523)
Q Consensus       149 ~V~~  152 (523)
                      +|++
T Consensus       119 ~Ivs  122 (348)
T 2y1w_A          119 IIIS  122 (348)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9999

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=98.80  E-value=2.1e-08  Score=100.96  Aligned_cols=102  Identities=19%  Similarity=0.090  Sum_probs=76.4

Q ss_pred             CCCeEEEECCCccHHHHHHHhc-CCCEEEEEcCChHHHHHHHHHHHhc---------------CCCCCCCceEEEeeecC
Q 009871          335 AGKKVLELGCGCGGICSMVAAG-SADLVVATDGDSIALDLLAQNVTAN---------------LKPPFLAKLITKRLEWG  398 (523)
Q Consensus       335 ~~~~VLElG~G~G~l~~~~a~~-~~~~V~~~D~~~~~l~~~~~n~~~n---------------~~~~~~~~v~~~~ldw~  398 (523)
                      ++.+|||+|||+|.+++.+++. ++.+|+++|+++.+++.+++|++.|               ++.    .+.+...|..
T Consensus        47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~----~i~v~~~Da~  122 (378)
T 2dul_A           47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEK----TIVINHDDAN  122 (378)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSS----EEEEEESCHH
T ss_pred             CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCC----ceEEEcCcHH
Confidence            5789999999999999998887 5668999999999999999999999               542    2555444332


Q ss_pred             CCCcchhhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEE
Q 009871          399 NRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCH  459 (523)
Q Consensus       399 ~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~  459 (523)
                      +      +.......||+|+. |..+   ....+++.+.++|         +++|.++++.
T Consensus       123 ~------~~~~~~~~fD~I~l-DP~~---~~~~~l~~a~~~l---------k~gG~l~vt~  164 (378)
T 2dul_A          123 R------LMAERHRYFHFIDL-DPFG---SPMEFLDTALRSA---------KRRGILGVTA  164 (378)
T ss_dssp             H------HHHHSTTCEEEEEE-CCSS---CCHHHHHHHHHHE---------EEEEEEEEEE
T ss_pred             H------HHHhccCCCCEEEe-CCCC---CHHHHHHHHHHhc---------CCCCEEEEEe
Confidence            1      11111357999995 6533   2467888888899         5688887764

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=98.80  E-value=5.3e-08  Score=94.90  Aligned_cols=128  Identities=12%  Similarity=0.038  Sum_probs=85.1

Q ss_pred             CeEEEECCCccHHHHHHHhc-CCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCcc
Q 009871          337 KKVLELGCGCGGICSMVAAG-SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFE  415 (523)
Q Consensus       337 ~~VLElG~G~G~l~~~~a~~-~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~fD  415 (523)
                      .+|||||||+|.++..+++. ...+|+++|+|+.+++.+++++..+.    ..++++...|..+     -+..+..++||
T Consensus        91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~----~~rv~v~~~Da~~-----~l~~~~~~~fD  161 (317)
T 3gjy_A           91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPR----APRVKIRVDDARM-----VAESFTPASRD  161 (317)
T ss_dssp             CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCC----TTTEEEEESCHHH-----HHHTCCTTCEE
T ss_pred             CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccC----CCceEEEECcHHH-----HHhhccCCCCC
Confidence            49999999999999888884 34589999999999999999875432    2466665443221     11223356899


Q ss_pred             EEEEccccC---CCCC--hHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCC--hhHHHHHHHHcCCEEEEEc
Q 009871          416 VILGTDVSY---IPEA--ILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVD--EPSMLSAATQCGFRLVDKW  484 (523)
Q Consensus       416 ~Ii~~d~~y---~~~~--~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~--~~~~~~~~~~~gf~~~~~~  484 (523)
                      +|++. +..   ....  ...+++.++++|         +|+|.+++........  ...+...+++. |....++
T Consensus       162 vIi~D-~~~~~~~~~~L~t~efl~~~~r~L---------kpgGvlv~~~~~~~~~~~~~~~~~tL~~v-F~~v~~~  226 (317)
T 3gjy_A          162 VIIRD-VFAGAITPQNFTTVEFFEHCHRGL---------APGGLYVANCGDHSDLRGAKSELAGMMEV-FEHVAVI  226 (317)
T ss_dssp             EEEEC-CSTTSCCCGGGSBHHHHHHHHHHE---------EEEEEEEEEEEECTTCHHHHHHHHHHHHH-CSEEEEE
T ss_pred             EEEEC-CCCccccchhhhHHHHHHHHHHhc---------CCCcEEEEEecCCcchHHHHHHHHHHHHH-CCceEEE
Confidence            99984 321   1222  268999999999         6799988766543211  12455666555 4433433

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=98.79  E-value=1.9e-08  Score=95.35  Aligned_cols=88  Identities=15%  Similarity=0.231  Sum_probs=64.9

Q ss_pred             cccchhhhHHHHhhhhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccC
Q 009871           56 FFKDRHYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLIS  135 (523)
Q Consensus        56 f~~~~~~l~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~  135 (523)
                      |..+...+ ..+.+.+...++.+|||||||+|.++..+++++  .+|+|+|+|+.|++.++++... ..+++++++|+.+
T Consensus        12 fl~d~~~~-~~i~~~~~~~~~~~VLDiG~G~G~lt~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~-~~~v~~~~~D~~~   87 (244)
T 1qam_A           12 FITSKHNI-DKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRC--NFVTAIEIDHKLCKTTENKLVD-HDNFQVLNKDILQ   87 (244)
T ss_dssp             BCCCHHHH-HHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHS--SEEEEECSCHHHHHHHHHHTTT-CCSEEEECCCGGG
T ss_pred             ccCCHHHH-HHHHHhCCCCCCCEEEEEeCCchHHHHHHHHcC--CeEEEEECCHHHHHHHHHhhcc-CCCeEEEEChHHh
Confidence            44333333 333334444678899999999999999999984  6799999999999999987643 2579999999998


Q ss_pred             CccCCCCC-CCceeEEE
Q 009871          136 DDLSRQIS-PSSIDIVT  151 (523)
Q Consensus       136 ~~~~~~~~-~~~fD~V~  151 (523)
                      .+    ++ ...|++|.
T Consensus        88 ~~----~~~~~~~~vv~  100 (244)
T 1qam_A           88 FK----FPKNQSYKIFG  100 (244)
T ss_dssp             CC----CCSSCCCEEEE
T ss_pred             CC----cccCCCeEEEE
Confidence            73    33 24565443

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=98.79  E-value=8.6e-09  Score=102.52  Aligned_cols=113  Identities=19%  Similarity=0.264  Sum_probs=79.2

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCC--CcEEEEEeeccCCccCCCCCCCceeEEE
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQISPSSIDIVT  151 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~V~  151 (523)
                      .++.+|||+|||+|.++.. ++.  ..+|+|+|+|+.|++.|+++...++  .+++++++|+.+.    .   ++||+|+
T Consensus       194 ~~~~~VLDlg~G~G~~~l~-a~~--~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~----~---~~fD~Vi  263 (336)
T 2yx1_A          194 SLNDVVVDMFAGVGPFSIA-CKN--AKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREV----D---VKGNRVI  263 (336)
T ss_dssp             CTTCEEEETTCTTSHHHHH-TTT--SSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGC----C---CCEEEEE
T ss_pred             CCCCEEEEccCccCHHHHh-ccC--CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHh----c---CCCcEEE
Confidence            3678999999999999999 763  6789999999999999999875443  4799999999865    2   7899999


Q ss_pred             Ec--cccccceeeec-ceEEecCCeEEEe-e--CHHHHHHHHHhC-CCcEEEEE
Q 009871          152 ME--RLTGKDQKISE-NFYVRGDGTRAFY-F--SNDFLTSLFKEN-GFDVEELG  198 (523)
Q Consensus       152 ~~--~~~~~~~~~~~-~~~~~~~g~~~~~-~--~~~~l~~ll~~~-Gf~~~~~~  198 (523)
                      +.  .+..  ..+.. .-.++++|.+.+. +  ..+.+.+.+.++ |+++..+.
T Consensus       264 ~dpP~~~~--~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~l~~~~~~~i~~~~  315 (336)
T 2yx1_A          264 MNLPKFAH--KFIDKALDIVEEGGVIHYYTIGKDFDKAIKLFEKKCDCEVLEKR  315 (336)
T ss_dssp             ECCTTTGG--GGHHHHHHHEEEEEEEEEEEEESSSHHHHHHHHHHSEEEEEEEE
T ss_pred             ECCcHhHH--HHHHHHHHHcCCCCEEEEEEeecCchHHHHHHHHhcCCcEEEEE
Confidence            91  1111  10000 1145667766542 2  245666777766 66654443

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=98.79  E-value=4.6e-08  Score=100.69  Aligned_cols=142  Identities=16%  Similarity=0.076  Sum_probs=94.3

Q ss_pred             hhHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCC-CEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeee
Q 009871          318 ESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSA-DLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLE  396 (523)
Q Consensus       318 ~~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~-~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ld  396 (523)
                      .++.+++..+.    ..++.+|||+|||+|+.+..++..+. .+|+++|+++.+++.+++|+..++..     +.+...|
T Consensus       233 ~~s~~~~~~l~----~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~-----~~~~~~D  303 (429)
T 1sqg_A          233 ASAQGCMTWLA----PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMK-----ATVKQGD  303 (429)
T ss_dssp             HHHHTHHHHHC----CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCC-----CEEEECC
T ss_pred             HHHHHHHHHcC----CCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCC-----eEEEeCc
Confidence            45555666663    24678999999999999999988754 69999999999999999999988763     3454444


Q ss_pred             cCCCCcchhhhhhcCCCccEEEEcc------ccCCCCC---------h-------HHHHHHHHHHhhccCCCCCCCCCcE
Q 009871          397 WGNRDHIEAIKEENNEGFEVILGTD------VSYIPEA---------I-------LPLFATAKELTASSNKSLREDQQPA  454 (523)
Q Consensus       397 w~~~~~~~~~~~~~~~~fD~Ii~~d------~~y~~~~---------~-------~~l~~~l~~ll~~~~~~~~~~~~g~  454 (523)
                      ..+..     ..+..++||+|++..      ++.....         +       ..+++.+.++|         +|||.
T Consensus       304 ~~~~~-----~~~~~~~fD~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~L---------kpGG~  369 (429)
T 1sqg_A          304 GRYPS-----QWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHL---------KTGGT  369 (429)
T ss_dssp             TTCTH-----HHHTTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGE---------EEEEE
T ss_pred             hhhch-----hhcccCCCCEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhc---------CCCCE
Confidence            43321     013346899999732      1211111         1       46677777888         67999


Q ss_pred             EEEEEeecC--CChhHHHHHHHHc-CCEEEE
Q 009871          455 FILCHIFRQ--VDEPSMLSAATQC-GFRLVD  482 (523)
Q Consensus       455 ~~l~~~~r~--~~~~~~~~~~~~~-gf~~~~  482 (523)
                      ++++...-.  ..+..+...++++ +|++..
T Consensus       370 lvystcs~~~~ene~~v~~~l~~~~~~~~~~  400 (429)
T 1sqg_A          370 LVYATCSVLPEENSLQIKAFLQRTADAELCE  400 (429)
T ss_dssp             EEEEESCCCGGGTHHHHHHHHHHCTTCEECS
T ss_pred             EEEEECCCChhhHHHHHHHHHHhCCCCEEeC
Confidence            988764432  2233344455554 677653

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=98.78  E-value=6.5e-09  Score=102.94  Aligned_cols=78  Identities=19%  Similarity=0.215  Sum_probs=63.7

Q ss_pred             CCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhcccc-----CCCcEEEEEeeccCCccCCCCCCCce
Q 009871           73 GAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDF-----TETRVSTFVCDLISDDLSRQISPSSI  147 (523)
Q Consensus        73 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~-----~~~~v~~~~~d~~~~~~~~~~~~~~f  147 (523)
                      ...+.+|||||||+|..+..+++..+..+|++||+|+.|++.|+++...     ...+++++++|+.+. ++ ..++++|
T Consensus       118 ~~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~-l~-~~~~~~f  195 (334)
T 1xj5_A          118 IPNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAF-LK-NAAEGSY  195 (334)
T ss_dssp             SSCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHH-HH-TSCTTCE
T ss_pred             CCCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHH-HH-hccCCCc
Confidence            3567899999999999999999887778999999999999999997632     246899999998642 11 1245789


Q ss_pred             eEEEE
Q 009871          148 DIVTM  152 (523)
Q Consensus       148 D~V~~  152 (523)
                      |+|++
T Consensus       196 DlIi~  200 (334)
T 1xj5_A          196 DAVIV  200 (334)
T ss_dssp             EEEEE
T ss_pred             cEEEE
Confidence            99998

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=98.78  E-value=1e-08  Score=101.66  Aligned_cols=73  Identities=19%  Similarity=0.271  Sum_probs=60.7

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC--CCcEEEEEeeccCCccCCCCCCCceeEEE
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISDDLSRQISPSSIDIVT  151 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~~~~~~~~~~fD~V~  151 (523)
                      .++.+|||||||+|.++..+++.+ ..+|+|+|+| .|++.|+++...+  ..+++++++|+.+.    ++++++||+|+
T Consensus        37 ~~~~~VLDiGcGtG~ls~~la~~g-~~~v~~vD~s-~~~~~a~~~~~~~~~~~~i~~~~~d~~~~----~~~~~~~D~Iv  110 (328)
T 1g6q_1           37 FKDKIVLDVGCGTGILSMFAAKHG-AKHVIGVDMS-SIIEMAKELVELNGFSDKITLLRGKLEDV----HLPFPKVDIII  110 (328)
T ss_dssp             HTTCEEEEETCTTSHHHHHHHHTC-CSEEEEEESS-THHHHHHHHHHHTTCTTTEEEEESCTTTS----CCSSSCEEEEE
T ss_pred             cCCCEEEEecCccHHHHHHHHHCC-CCEEEEEChH-HHHHHHHHHHHHcCCCCCEEEEECchhhc----cCCCCcccEEE
Confidence            357899999999999999988873 3589999999 5999999876433  35799999999877    55668999999


Q ss_pred             E
Q 009871          152 M  152 (523)
Q Consensus       152 ~  152 (523)
                      +
T Consensus       111 s  111 (328)
T 1g6q_1          111 S  111 (328)
T ss_dssp             E
T ss_pred             E
Confidence            8

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=98.78  E-value=1e-08  Score=106.20  Aligned_cols=80  Identities=15%  Similarity=0.130  Sum_probs=65.5

Q ss_pred             hcCCCCCeEEEECCCccccHHHHHhhCCC-CEEEEEeCCHHHHHHHHhccccC-CCcEEEEEeeccCCccCCCCCCCcee
Q 009871           71 FSGAGRKDVLEVGCGAGNTIFPLIAAYPD-VFVYACDFSPRAVNLVMTHKDFT-ETRVSTFVCDLISDDLSRQISPSSID  148 (523)
Q Consensus        71 ~~~~~~~~iLDiGcG~G~~~~~l~~~~~~-~~v~gvD~S~~~l~~a~~~~~~~-~~~v~~~~~d~~~~~~~~~~~~~~fD  148 (523)
                      +...++.+|||+|||+|..+..+++..++ .+|+|+|+|+.+++.++++.... ..++.++++|+....  ..+++++||
T Consensus       255 l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~--~~~~~~~fD  332 (450)
T 2yxl_A          255 LDPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAP--EIIGEEVAD  332 (450)
T ss_dssp             HCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCS--SSSCSSCEE
T ss_pred             cCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcc--hhhccCCCC
Confidence            34467789999999999999999998765 79999999999999999986543 347999999998652  114557899


Q ss_pred             EEEE
Q 009871          149 IVTM  152 (523)
Q Consensus       149 ~V~~  152 (523)
                      +|++
T Consensus       333 ~Vl~  336 (450)
T 2yxl_A          333 KVLL  336 (450)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9997

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=98.77  E-value=3.2e-09  Score=100.31  Aligned_cols=79  Identities=22%  Similarity=0.237  Sum_probs=62.2

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCC-CCEEEEEeCCHHHHHHHHhccccCC--CcEEEEEeeccCC--ccC-CCCCCCce
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYP-DVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISD--DLS-RQISPSSI  147 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~-~~~v~gvD~S~~~l~~a~~~~~~~~--~~v~~~~~d~~~~--~~~-~~~~~~~f  147 (523)
                      .++.+|||||||+|..+..+++..| +.+|+++|+|+.+++.|+++....+  .+++++++|+.+.  .+. ..+++++|
T Consensus        69 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f  148 (237)
T 3c3y_A           69 VNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSY  148 (237)
T ss_dssp             TTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCE
T ss_pred             hCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCc
Confidence            4678999999999999999999866 7899999999999999998764332  4699999998642  010 00125789


Q ss_pred             eEEEE
Q 009871          148 DIVTM  152 (523)
Q Consensus       148 D~V~~  152 (523)
                      |+|++
T Consensus       149 D~I~~  153 (237)
T 3c3y_A          149 DFGFV  153 (237)
T ss_dssp             EEEEE
T ss_pred             CEEEE
Confidence            99987

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=98.77  E-value=1.4e-08  Score=99.68  Aligned_cols=108  Identities=18%  Similarity=0.141  Sum_probs=73.7

Q ss_pred             CCCeEEEECCCccHHHHHHHhcC-CCEEEEEcCChHHHHHHHHHHHhc--CCCCCCCceEEEeeecCCCCcchhhhhhcC
Q 009871          335 AGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTAN--LKPPFLAKLITKRLEWGNRDHIEAIKEENN  411 (523)
Q Consensus       335 ~~~~VLElG~G~G~l~~~~a~~~-~~~V~~~D~~~~~l~~~~~n~~~n--~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~  411 (523)
                      ..++|||||||+|.++..+++.. ..+|+++|+|+.+++.|++|+...  +.  ...++.+...|..+     .+ ....
T Consensus       108 ~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~--~~~rv~~~~~D~~~-----~l-~~~~  179 (314)
T 2b2c_A          108 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGF--SHPKLDLFCGDGFE-----FL-KNHK  179 (314)
T ss_dssp             SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGG--GCTTEEEECSCHHH-----HH-HHCT
T ss_pred             CCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhcccc--CCCCEEEEEChHHH-----HH-HhcC
Confidence            45799999999998888888774 569999999999999999987643  21  12456665443321     11 1135


Q ss_pred             CCccEEEEccccCC---CCC-h-HHHHHHHHHHhhccCCCCCCCCCcEEEEEEe
Q 009871          412 EGFEVILGTDVSYI---PEA-I-LPLFATAKELTASSNKSLREDQQPAFILCHI  460 (523)
Q Consensus       412 ~~fD~Ii~~d~~y~---~~~-~-~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~  460 (523)
                      ++||+|++. ....   ... . ..+++.+.++|         +|||.+++...
T Consensus       180 ~~fD~Ii~d-~~~~~~~~~~l~t~~~l~~~~~~L---------kpgG~lv~~~~  223 (314)
T 2b2c_A          180 NEFDVIITD-SSDPVGPAESLFGQSYYELLRDAL---------KEDGILSSQGE  223 (314)
T ss_dssp             TCEEEEEEC-CC-------------HHHHHHHHE---------EEEEEEEEECC
T ss_pred             CCceEEEEc-CCCCCCcchhhhHHHHHHHHHhhc---------CCCeEEEEECC
Confidence            689999974 3211   111 2 68899999999         67999988653

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=98.77  E-value=1.2e-08  Score=91.36  Aligned_cols=112  Identities=14%  Similarity=0.046  Sum_probs=83.7

Q ss_pred             CCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCC
Q 009871          333 IVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNE  412 (523)
Q Consensus       333 ~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~  412 (523)
                      ..+|.+|||||||.               +.+|+++.|++.++++...        .+.+...|..+...    ..++++
T Consensus        10 ~~~g~~vL~~~~g~---------------v~vD~s~~ml~~a~~~~~~--------~~~~~~~d~~~~~~----~~~~~~   62 (176)
T 2ld4_A           10 ISAGQFVAVVWDKS---------------SPVEALKGLVDKLQALTGN--------EGRVSVENIKQLLQ----SAHKES   62 (176)
T ss_dssp             CCTTSEEEEEECTT---------------SCHHHHHHHHHHHHHHTTT--------TSEEEEEEGGGGGG----GCCCSS
T ss_pred             CCCCCEEEEecCCc---------------eeeeCCHHHHHHHHHhccc--------CcEEEEechhcCcc----ccCCCC
Confidence            45789999999996               2399999999999987532        24555555543210    012467


Q ss_pred             CccEEEEccccCCC-CChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecC--------CChhHHHHHHHHcCCEEE
Q 009871          413 GFEVILGTDVSYIP-EAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ--------VDEPSMLSAATQCGFRLV  481 (523)
Q Consensus       413 ~fD~Ii~~d~~y~~-~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~--------~~~~~~~~~~~~~gf~~~  481 (523)
                      +||+|+++.++++. .....+++.+.++|         +|||.+++.+....        .+...+.+.++++|| +.
T Consensus        63 ~fD~V~~~~~l~~~~~~~~~~l~~~~r~L---------kpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf-i~  130 (176)
T 2ld4_A           63 SFDIILSGLVPGSTTLHSAEILAEIARIL---------RPGGCLFLKEPVETAVDNNSKVKTASKLCSALTLSGL-VE  130 (176)
T ss_dssp             CEEEEEECCSTTCCCCCCHHHHHHHHHHE---------EEEEEEEEEEEEESSSCSSSSSCCHHHHHHHHHHTTC-EE
T ss_pred             CEeEEEECChhhhcccCHHHHHHHHHHHC---------CCCEEEEEEcccccccccccccCCHHHHHHHHHHCCC-cE
Confidence            89999999999887 88899999999999         67999999765321        124578889999999 55

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=98.76  E-value=6.6e-09  Score=105.84  Aligned_cols=84  Identities=12%  Similarity=0.173  Sum_probs=62.0

Q ss_pred             hhhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHH-------HhccccCC---CcEEEEEeeccCCcc
Q 009871           69 RYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLV-------MTHKDFTE---TRVSTFVCDLISDDL  138 (523)
Q Consensus        69 ~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a-------~~~~~~~~---~~v~~~~~d~~~~~~  138 (523)
                      +.+...++.+|||||||+|.++..+++.++..+|+|||+|+.|++.|       +++....+   .+++++++|......
T Consensus       236 ~~l~l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~~~~~~  315 (433)
T 1u2z_A          236 QQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNN  315 (433)
T ss_dssp             HHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCH
T ss_pred             HhcCCCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCcccccc
Confidence            34455678899999999999999999986566899999999999998       76654322   679999876542210


Q ss_pred             CCCCCCCceeEEEE
Q 009871          139 SRQISPSSIDIVTM  152 (523)
Q Consensus       139 ~~~~~~~~fD~V~~  152 (523)
                      +.+...++||+|++
T Consensus       316 ~~~~~~~~FDvIvv  329 (433)
T 1u2z_A          316 RVAELIPQCDVILV  329 (433)
T ss_dssp             HHHHHGGGCSEEEE
T ss_pred             ccccccCCCCEEEE
Confidence            00012468999998

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=98.76  E-value=2.5e-08  Score=100.21  Aligned_cols=121  Identities=13%  Similarity=0.062  Sum_probs=90.9

Q ss_pred             CCCeEEEECCCccHHHHHHHhcCC-CEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCC
Q 009871          335 AGKKVLELGCGCGGICSMVAAGSA-DLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG  413 (523)
Q Consensus       335 ~~~~VLElG~G~G~l~~~~a~~~~-~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~  413 (523)
                      ++.+|||||||+|.++..+++..+ .+++++|+ +.+++.++.      .    ..+.+...|..+.        + + .
T Consensus       193 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~----~~v~~~~~d~~~~--------~-~-~  251 (358)
T 1zg3_A          193 GLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTG------N----ENLNFVGGDMFKS--------I-P-S  251 (358)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCC------C----SSEEEEECCTTTC--------C-C-C
T ss_pred             CCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhccc------C----CCcEEEeCccCCC--------C-C-C
Confidence            567999999999998888888754 48999999 788876543      1    2377766665431        1 2 5


Q ss_pred             ccEEEEccccCCCCChH--HHHHHHHHHhhccCCCCCCCC---CcEEEEEEeecCC------------------------
Q 009871          414 FEVILGTDVSYIPEAIL--PLFATAKELTASSNKSLREDQ---QPAFILCHIFRQV------------------------  464 (523)
Q Consensus       414 fD~Ii~~d~~y~~~~~~--~l~~~l~~ll~~~~~~~~~~~---~g~~~l~~~~r~~------------------------  464 (523)
                      ||+|+++.++++.....  .+++.+.+.|         +|   ||.+++.......                        
T Consensus       252 ~D~v~~~~vlh~~~d~~~~~~l~~~~~~L---------~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g  322 (358)
T 1zg3_A          252 ADAVLLKWVLHDWNDEQSLKILKNSKEAI---------SHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLTMFLG  322 (358)
T ss_dssp             CSEEEEESCGGGSCHHHHHHHHHHHHHHT---------GGGGGGCEEEEEECEECTTCSCHHHHHHHHHHHHHHHHHHSC
T ss_pred             ceEEEEcccccCCCHHHHHHHHHHHHHhC---------CCCCCCcEEEEEEeccCCCCccchhhhHHHhhCHHHhccCCC
Confidence            99999999999877655  9999999999         67   8988886543210                        


Q ss_pred             ---ChhHHHHHHHHcCCEEEEEcC
Q 009871          465 ---DEPSMLSAATQCGFRLVDKWP  485 (523)
Q Consensus       465 ---~~~~~~~~~~~~gf~~~~~~~  485 (523)
                         +..++.+.++++||++.+++.
T Consensus       323 ~~~t~~e~~~ll~~aGf~~~~~~~  346 (358)
T 1zg3_A          323 KERTKQEWEKLIYDAGFSSYKITP  346 (358)
T ss_dssp             CCEEHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCCCHHHHHHHHHHcCCCeeEEEe
Confidence               234566777889999988876

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=98.76  E-value=1.7e-08  Score=97.30  Aligned_cols=82  Identities=15%  Similarity=0.172  Sum_probs=62.7

Q ss_pred             ccccchhhhHHHHhhhhcCCCCCeEEEECCCccccHHHHHhhCCC--CEEEEEeCCHHHHHHHHhccccCCCcEEEEEee
Q 009871           55 RFFKDRHYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPD--VFVYACDFSPRAVNLVMTHKDFTETRVSTFVCD  132 (523)
Q Consensus        55 ~f~~~~~~l~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~--~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d  132 (523)
                      +|..+..++ ..+-+.+...++.+|||||||+|.++..|+++.+.  .+|+|+|+|+.|++.++++.   ..+++++++|
T Consensus        23 ~fL~d~~i~-~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~---~~~v~~i~~D   98 (279)
T 3uzu_A           23 NFLVDHGVI-DAIVAAIRPERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF---GELLELHAGD   98 (279)
T ss_dssp             CEECCHHHH-HHHHHHHCCCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH---GGGEEEEESC
T ss_pred             cccCCHHHH-HHHHHhcCCCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc---CCCcEEEECC
Confidence            344444433 33444455567889999999999999999988432  45999999999999999883   4679999999


Q ss_pred             ccCCccCC
Q 009871          133 LISDDLSR  140 (523)
Q Consensus       133 ~~~~~~~~  140 (523)
                      +.+.+++.
T Consensus        99 ~~~~~~~~  106 (279)
T 3uzu_A           99 ALTFDFGS  106 (279)
T ss_dssp             GGGCCGGG
T ss_pred             hhcCChhH
Confidence            99886543

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=98.76  E-value=1.6e-08  Score=101.73  Aligned_cols=112  Identities=17%  Similarity=0.213  Sum_probs=80.6

Q ss_pred             CCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEEE--
Q 009871           75 GRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM--  152 (523)
Q Consensus        75 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~--  152 (523)
                      ...+|||||||+|..+..+++++|+.+++++|+ +.|++.|++.     .+++++.+|+.+     +++  +||+|++  
T Consensus       193 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~d~~~-----~~~--~~D~v~~~~  259 (358)
T 1zg3_A          193 GLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTGN-----ENLNFVGGDMFK-----SIP--SADAVLLKW  259 (358)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCCC-----SSEEEEECCTTT-----CCC--CCSEEEEES
T ss_pred             CCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhcccC-----CCcEEEeCccCC-----CCC--CceEEEEcc
Confidence            568999999999999999999999999999999 7998777652     459999999974     233  4999999  


Q ss_pred             -----------------cccccc---ceeeecceEEec-CCeE-------------------EEeeCHHHHHHHHHhCCC
Q 009871          153 -----------------ERLTGK---DQKISENFYVRG-DGTR-------------------AFYFSNDFLTSLFKENGF  192 (523)
Q Consensus       153 -----------------~~~~~~---~~~~~~~~~~~~-~g~~-------------------~~~~~~~~l~~ll~~~Gf  192 (523)
                                       .+.+++   ++++.-.....+ .+..                   -..++.+++.++|+++||
T Consensus       260 vlh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf  339 (358)
T 1zg3_A          260 VLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLTMFLGKERTKQEWEKLIYDAGF  339 (358)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHTGGGGGGCEEEEEECEECTTCSCHHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTTC
T ss_pred             cccCCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeccCCCCccchhhhHHHhhCHHHhccCCCCCCCHHHHHHHHHHcCC
Confidence                             233344   444332111111 1110                   012488999999999999


Q ss_pred             cEEEEEe
Q 009871          193 DVEELGL  199 (523)
Q Consensus       193 ~~~~~~~  199 (523)
                      ..+++..
T Consensus       340 ~~~~~~~  346 (358)
T 1zg3_A          340 SSYKITP  346 (358)
T ss_dssp             CEEEEEE
T ss_pred             CeeEEEe
Confidence            9887754

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=98.76  E-value=3.5e-09  Score=100.84  Aligned_cols=47  Identities=21%  Similarity=0.253  Sum_probs=41.6

Q ss_pred             CCCCeEEEECCCccccHHHHHhh--CCCCEEEEEeCCHHHHHHHHhccc
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAA--YPDVFVYACDFSPRAVNLVMTHKD  120 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~--~~~~~v~gvD~S~~~l~~a~~~~~  120 (523)
                      .++.+|||+|||+|.++..+++.  .++.+|+|+|+|+.|++.|+++..
T Consensus        50 ~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~   98 (250)
T 1o9g_A           50 DGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLA   98 (250)
T ss_dssp             CSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHH
T ss_pred             CCCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHH
Confidence            35679999999999999999987  667789999999999999998653

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=98.76  E-value=7.5e-09  Score=101.29  Aligned_cols=76  Identities=13%  Similarity=0.243  Sum_probs=63.1

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhcccc-----CCCcEEEEEeeccCCccCCCCCCCcee
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDF-----TETRVSTFVCDLISDDLSRQISPSSID  148 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~-----~~~~v~~~~~d~~~~~~~~~~~~~~fD  148 (523)
                      ..+.+|||||||+|..+..++++.+..+|++||+|+.|++.|+++...     ...+++++++|+.+. +  +..+++||
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~-l--~~~~~~fD  170 (304)
T 2o07_A           94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEF-M--KQNQDAFD  170 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHH-H--HTCSSCEE
T ss_pred             CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHH-H--hhCCCCce
Confidence            567899999999999999999887778999999999999999997532     257899999998642 1  12357899


Q ss_pred             EEEE
Q 009871          149 IVTM  152 (523)
Q Consensus       149 ~V~~  152 (523)
                      +|++
T Consensus       171 ~Ii~  174 (304)
T 2o07_A          171 VIIT  174 (304)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9998

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=98.75  E-value=3.8e-08  Score=96.25  Aligned_cols=109  Identities=18%  Similarity=0.129  Sum_probs=75.5

Q ss_pred             CCCeEEEECCCccHHHHHHHhcC-CCEEEEEcCChHHHHHHHHHHHh--cCCCCCCCceEEEeeecCCCCcchhhhhhcC
Q 009871          335 AGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTA--NLKPPFLAKLITKRLEWGNRDHIEAIKEENN  411 (523)
Q Consensus       335 ~~~~VLElG~G~G~l~~~~a~~~-~~~V~~~D~~~~~l~~~~~n~~~--n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~  411 (523)
                      .+++|||||||+|.++..+++.. ..+|+++|+|+.+++.+++|+..  ++..  ..++.+...|..     ..+ ....
T Consensus        95 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~--~~rv~v~~~Da~-----~~l-~~~~  166 (304)
T 2o07_A           95 NPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYS--SSKLTLHVGDGF-----EFM-KQNQ  166 (304)
T ss_dssp             SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGG--CTTEEEEESCHH-----HHH-HTCS
T ss_pred             CCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccC--CCcEEEEECcHH-----HHH-hhCC
Confidence            56899999999998888888774 46999999999999999999765  3321  145666543321     111 1235


Q ss_pred             CCccEEEEccccCCC-----CChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee
Q 009871          412 EGFEVILGTDVSYIP-----EAILPLFATAKELTASSNKSLREDQQPAFILCHIF  461 (523)
Q Consensus       412 ~~fD~Ii~~d~~y~~-----~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~  461 (523)
                      ++||+|++. .....     .....+++.+.++|         +|+|.+++....
T Consensus       167 ~~fD~Ii~d-~~~~~~~~~~l~~~~~l~~~~~~L---------kpgG~lv~~~~~  211 (304)
T 2o07_A          167 DAFDVIITD-SSDPMGPAESLFKESYYQLMKTAL---------KEDGVLCCQGEC  211 (304)
T ss_dssp             SCEEEEEEE-CC-----------CHHHHHHHHHE---------EEEEEEEEEEEC
T ss_pred             CCceEEEEC-CCCCCCcchhhhHHHHHHHHHhcc---------CCCeEEEEecCC
Confidence            689999984 33211     12356899999999         679999886543

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=98.75  E-value=1.6e-08  Score=95.26  Aligned_cols=125  Identities=12%  Similarity=0.105  Sum_probs=84.5

Q ss_pred             CCCeEEEECCCccHHHHHHHhc----C-CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhh
Q 009871          335 AGKKVLELGCGCGGICSMVAAG----S-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEE  409 (523)
Q Consensus       335 ~~~~VLElG~G~G~l~~~~a~~----~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~  409 (523)
                      ++.+|||||||+|..+..++..    + ..+|+++|+++.+++.++      +.   ..++.+...|..+...+.   ..
T Consensus        81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~------~~---~~~v~~~~gD~~~~~~l~---~~  148 (236)
T 2bm8_A           81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA------SD---MENITLHQGDCSDLTTFE---HL  148 (236)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG------GG---CTTEEEEECCSSCSGGGG---GG
T ss_pred             CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHh------cc---CCceEEEECcchhHHHHH---hh
Confidence            4679999999999888888876    2 468999999999988876      11   146777776665431111   12


Q ss_pred             cCCCccEEEEccccCCCCChHHHHHHHHH-HhhccCCCCCCCCCcEEEEEEee---cCCChhHHHHHHHHc--CCEEEEE
Q 009871          410 NNEGFEVILGTDVSYIPEAILPLFATAKE-LTASSNKSLREDQQPAFILCHIF---RQVDEPSMLSAATQC--GFRLVDK  483 (523)
Q Consensus       410 ~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~-ll~~~~~~~~~~~~g~~~l~~~~---r~~~~~~~~~~~~~~--gf~~~~~  483 (523)
                      ...+||+|+.... +  .....++..+.+ +|         +|||.+++....   .......+.+.+++.  +|++...
T Consensus       149 ~~~~fD~I~~d~~-~--~~~~~~l~~~~r~~L---------kpGG~lv~~d~~~~~~~~~~~~~~~~l~~~~~~f~~~~~  216 (236)
T 2bm8_A          149 REMAHPLIFIDNA-H--ANTFNIMKWAVDHLL---------EEGDYFIIEDMIPYWYRYAPQLFSEYLGAFRDVLSMDML  216 (236)
T ss_dssp             SSSCSSEEEEESS-C--SSHHHHHHHHHHHTC---------CTTCEEEECSCHHHHHHHCHHHHHHHHHTTTTTEEEETT
T ss_pred             ccCCCCEEEECCc-h--HhHHHHHHHHHHhhC---------CCCCEEEEEeCcccccccCHHHHHHHHHhCcccEEEcch
Confidence            2337999997543 2  367888998886 99         779999985421   011223556666665  6777543

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=98.75  E-value=4.1e-09  Score=108.39  Aligned_cols=80  Identities=10%  Similarity=0.059  Sum_probs=64.3

Q ss_pred             hhcCCCCCeEEEECCCccccHHHHHhhCC-CCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCcee
Q 009871           70 YFSGAGRKDVLEVGCGAGNTIFPLIAAYP-DVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSID  148 (523)
Q Consensus        70 ~~~~~~~~~iLDiGcG~G~~~~~l~~~~~-~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD  148 (523)
                      .+...++.+|||+|||+|..+..+++..+ ..+|+|+|+|+.|++.++++....+..+.+.++|+..+.   ...+++||
T Consensus        96 ~L~~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~v~~~~~Da~~l~---~~~~~~FD  172 (464)
T 3m6w_A           96 LLDPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAPLAVTQAPPRALA---EAFGTYFH  172 (464)
T ss_dssp             HHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCCCEEECSCHHHHH---HHHCSCEE
T ss_pred             hcCcCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCeEEEEECCHHHhh---hhccccCC
Confidence            34556789999999999999999998864 378999999999999999987543333889999987541   12357899


Q ss_pred             EEEE
Q 009871          149 IVTM  152 (523)
Q Consensus       149 ~V~~  152 (523)
                      +|++
T Consensus       173 ~Il~  176 (464)
T 3m6w_A          173 RVLL  176 (464)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9997

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=98.75  E-value=1.2e-08  Score=98.51  Aligned_cols=120  Identities=17%  Similarity=0.174  Sum_probs=82.1

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccc-----cCCCcEEEEEeeccCCccCCCCCCCcee
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKD-----FTETRVSTFVCDLISDDLSRQISPSSID  148 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~-----~~~~~v~~~~~d~~~~~~~~~~~~~~fD  148 (523)
                      +.+.+|||||||+|.++..++++.+..+|++||+++.|++.|+++..     ...++++++++|+.+. +  +..+++||
T Consensus        74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~-l--~~~~~~fD  150 (275)
T 1iy9_A           74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMH-I--AKSENQYD  150 (275)
T ss_dssp             SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHH-H--HTCCSCEE
T ss_pred             CCCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHH-H--hhCCCCee
Confidence            46789999999999999999987666799999999999999999752     2246899999998742 1  12357899


Q ss_pred             EEEEccccc--ccee------eec-ceEEecCCeEEEee-----CH---HHHHHHHHhCCCcEEEE
Q 009871          149 IVTMERLTG--KDQK------ISE-NFYVRGDGTRAFYF-----SN---DFLTSLFKENGFDVEEL  197 (523)
Q Consensus       149 ~V~~~~~~~--~~~~------~~~-~~~~~~~g~~~~~~-----~~---~~l~~ll~~~Gf~~~~~  197 (523)
                      +|++.-...  ....      +.. .-.++++|.++...     ..   ..+.+.+++. |..+..
T Consensus       151 ~Ii~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~-F~~v~~  215 (275)
T 1iy9_A          151 VIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDNPWFTPELITNVQRDVKEI-FPITKL  215 (275)
T ss_dssp             EEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTT-CSEEEE
T ss_pred             EEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCccccHHHHHHHHHHHHHh-CCCeEE
Confidence            999911110  0000      000 12577888877642     22   3455667666 766544

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=98.75  E-value=2.8e-08  Score=100.50  Aligned_cols=119  Identities=16%  Similarity=0.112  Sum_probs=86.1

Q ss_pred             HHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCC---------------------------------------CEEEE
Q 009871          323 MAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSA---------------------------------------DLVVA  363 (523)
Q Consensus       323 la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~---------------------------------------~~V~~  363 (523)
                      |+..|.......++.+|||+|||+|.+++.+|..+.                                       .+|++
T Consensus       183 lAa~ll~~~~~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~G  262 (385)
T 3ldu_A          183 LAAGLIYLTPWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYG  262 (385)
T ss_dssp             HHHHHHHTSCCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEE
T ss_pred             HHHHHHHhhCCCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEE
Confidence            666666555556788999999999988887776532                                       36999


Q ss_pred             EcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCccEEEEccccCCC-----CChHHHHHHHHH
Q 009871          364 TDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIP-----EAILPLFATAKE  438 (523)
Q Consensus       364 ~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~-----~~~~~l~~~l~~  438 (523)
                      +|+|+.|++.|+.|+..+++.   ..+.+...|..+..        .+.+||+|+++.. |..     ..+..+.+.+.+
T Consensus       263 vDid~~ai~~Ar~Na~~~gl~---~~i~~~~~D~~~l~--------~~~~~D~Iv~NPP-yg~rl~~~~~l~~ly~~lg~  330 (385)
T 3ldu_A          263 YDIDEESIDIARENAEIAGVD---EYIEFNVGDATQFK--------SEDEFGFIITNPP-YGERLEDKDSVKQLYKELGY  330 (385)
T ss_dssp             EESCHHHHHHHHHHHHHHTCG---GGEEEEECCGGGCC--------CSCBSCEEEECCC-CCCSHHHHHHHHHHHHHHHH
T ss_pred             EECCHHHHHHHHHHHHHcCCC---CceEEEECChhhcC--------cCCCCcEEEECCC-CcCccCCHHHHHHHHHHHHH
Confidence            999999999999999999875   46777766654421        1358999999765 442     345667777777


Q ss_pred             HhhccCCCCCCCCCcEEEEEEe
Q 009871          439 LTASSNKSLREDQQPAFILCHI  460 (523)
Q Consensus       439 ll~~~~~~~~~~~~g~~~l~~~  460 (523)
                      .|+.       -+++.+++...
T Consensus       331 ~lk~-------~~g~~~~iit~  345 (385)
T 3ldu_A          331 AFRK-------LKNWSYYLITS  345 (385)
T ss_dssp             HHHT-------SBSCEEEEEES
T ss_pred             HHhh-------CCCCEEEEEEC
Confidence            7832       13666666543

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=98.74  E-value=2.1e-08  Score=98.66  Aligned_cols=132  Identities=14%  Similarity=0.144  Sum_probs=85.3

Q ss_pred             CCCeEEEECCCccHHHHHHHhc-CCCEEEEEcCChHHHHHHHHHHHh-cCCCCCCCceEEEeeecCCCCcchhhhhhcCC
Q 009871          335 AGKKVLELGCGCGGICSMVAAG-SADLVVATDGDSIALDLLAQNVTA-NLKPPFLAKLITKRLEWGNRDHIEAIKEENNE  412 (523)
Q Consensus       335 ~~~~VLElG~G~G~l~~~~a~~-~~~~V~~~D~~~~~l~~~~~n~~~-n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~  412 (523)
                      .+++|||||||+|.++..+++. +..+|+++|+|+.+++.+++++.. |.......++.+...|..+     .+ ....+
T Consensus        77 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~-----~l-~~~~~  150 (314)
T 1uir_A           77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARA-----YL-ERTEE  150 (314)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHH-----HH-HHCCC
T ss_pred             CCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHH-----HH-HhcCC
Confidence            4579999999999888888877 356999999999999999998764 2210012456665544321     11 12356


Q ss_pred             CccEEEEccccCC-C-CC-----hHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecC-CC---hhHHHHHHHHcCCEEE
Q 009871          413 GFEVILGTDVSYI-P-EA-----ILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ-VD---EPSMLSAATQCGFRLV  481 (523)
Q Consensus       413 ~fD~Ii~~d~~y~-~-~~-----~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~-~~---~~~~~~~~~~~gf~~~  481 (523)
                      +||+|++.-.... . ..     ...+++.+.++|         +|||.+++...... ..   ...+.+.+++. |...
T Consensus       151 ~fD~Ii~d~~~~~~~~~~~~~l~~~~~l~~~~~~L---------kpgG~lv~~~~~~~~~~~~~~~~~~~~l~~~-F~~v  220 (314)
T 1uir_A          151 RYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHL---------NPGGVMGMQTGMILLTHHRVHPVVHRTVREA-FRYV  220 (314)
T ss_dssp             CEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTE---------EEEEEEEEEEEEECC---CHHHHHHHHHHTT-CSEE
T ss_pred             CccEEEECCCCcccccCcchhccHHHHHHHHHHhc---------CCCcEEEEEccCccccCHHHHHHHHHHHHHH-CCce
Confidence            8999998532221 0 11     478899999999         67999887654322 11   23455556555 4433


Q ss_pred             E
Q 009871          482 D  482 (523)
Q Consensus       482 ~  482 (523)
                      .
T Consensus       221 ~  221 (314)
T 1uir_A          221 R  221 (314)
T ss_dssp             E
T ss_pred             E
Confidence            3

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=98.72  E-value=8.3e-09  Score=110.08  Aligned_cols=84  Identities=18%  Similarity=0.155  Sum_probs=64.1

Q ss_pred             CCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhh-hhcCCC
Q 009871          335 AGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIK-EENNEG  413 (523)
Q Consensus       335 ~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~-~~~~~~  413 (523)
                      ++.+|||||||.|.++..+|++|+ .|+|+|.++.+|+.|+..+..++..    .+.+...+.      +.+. ...+++
T Consensus        66 ~~~~vLDvGCG~G~~~~~la~~ga-~V~giD~~~~~i~~a~~~a~~~~~~----~~~~~~~~~------~~~~~~~~~~~  134 (569)
T 4azs_A           66 RPLNVLDLGCAQGFFSLSLASKGA-TIVGIDFQQENINVCRALAEENPDF----AAEFRVGRI------EEVIAALEEGE  134 (569)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTSTTS----EEEEEECCH------HHHHHHCCTTS
T ss_pred             CCCeEEEECCCCcHHHHHHHhCCC-EEEEECCCHHHHHHHHHHHHhcCCC----ceEEEECCH------HHHhhhccCCC
Confidence            567999999999999988988875 7999999999999999988876532    355544332      2221 234578


Q ss_pred             ccEEEEccccCCCCCh
Q 009871          414 FEVILGTDVSYIPEAI  429 (523)
Q Consensus       414 fD~Ii~~d~~y~~~~~  429 (523)
                      ||+|++.+++++..+.
T Consensus       135 fD~v~~~e~~ehv~~~  150 (569)
T 4azs_A          135 FDLAIGLSVFHHIVHL  150 (569)
T ss_dssp             CSEEEEESCHHHHHHH
T ss_pred             ccEEEECcchhcCCCH
Confidence            9999999999985543

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=98.72  E-value=6e-09  Score=98.03  Aligned_cols=78  Identities=22%  Similarity=0.365  Sum_probs=60.8

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCC-CCEEEEEeCCHHHHHHHHhccccC--CCcEEEEEeeccCCccCC-CCCC--Cce
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYP-DVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISDDLSR-QISP--SSI  147 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~-~~~v~gvD~S~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~~~~-~~~~--~~f  147 (523)
                      .++.+|||||||+|..+..+++..+ +++|+|+|+|+.+++.|+++....  ..+++++++|+.+. ++. +..+  ++|
T Consensus        71 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~-l~~l~~~~~~~~f  149 (232)
T 3cbg_A           71 TGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALAT-LEQLTQGKPLPEF  149 (232)
T ss_dssp             HTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHH-HHHHHTSSSCCCE
T ss_pred             cCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHH-HHHHHhcCCCCCc
Confidence            3567999999999999999999865 689999999999999999875332  24699999997531 000 1223  789


Q ss_pred             eEEEE
Q 009871          148 DIVTM  152 (523)
Q Consensus       148 D~V~~  152 (523)
                      |+|++
T Consensus       150 D~V~~  154 (232)
T 3cbg_A          150 DLIFI  154 (232)
T ss_dssp             EEEEE
T ss_pred             CEEEE
Confidence            99987

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=98.72  E-value=1.1e-08  Score=100.98  Aligned_cols=120  Identities=18%  Similarity=0.211  Sum_probs=81.6

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhcccc-----CCCcEEEEEeeccCCccCCCCCCCcee
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDF-----TETRVSTFVCDLISDDLSRQISPSSID  148 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~-----~~~~v~~~~~d~~~~~~~~~~~~~~fD  148 (523)
                      +.+.+|||||||+|..+..+++..+..+|+++|+|+.|++.|+++...     ...+++++++|+.+. +  +..+++||
T Consensus       115 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~-l--~~~~~~fD  191 (321)
T 2pt6_A          115 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKF-L--ENVTNTYD  191 (321)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHH-H--HHCCSCEE
T ss_pred             CCCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHH-H--hhcCCCce
Confidence            467899999999999999999887778999999999999999997643     146899999998642 1  12357899


Q ss_pred             EEEEcccc--ccceee------ec-ceEEecCCeEEEe-----eCHH---HHHHHHHhCCCcEEEE
Q 009871          149 IVTMERLT--GKDQKI------SE-NFYVRGDGTRAFY-----FSND---FLTSLFKENGFDVEEL  197 (523)
Q Consensus       149 ~V~~~~~~--~~~~~~------~~-~~~~~~~g~~~~~-----~~~~---~l~~ll~~~Gf~~~~~  197 (523)
                      +|++....  .+...+      .. .-.++++|.++..     +..+   .+.+.+++. |..+..
T Consensus       192 vIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~-F~~v~~  256 (321)
T 2pt6_A          192 VIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCESLWIHVGTIKNMIGYAKKL-FKKVEY  256 (321)
T ss_dssp             EEEEECCCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHHHTT-CSEEEE
T ss_pred             EEEECCcCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHH-CCCeEE
Confidence            99982110  111000      00 1257888887763     2333   344555554 665544

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=98.71  E-value=1e-08  Score=100.64  Aligned_cols=76  Identities=16%  Similarity=0.235  Sum_probs=63.2

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhcccc-----CCCcEEEEEeeccCCccCCCCCCCcee
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDF-----TETRVSTFVCDLISDDLSRQISPSSID  148 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~-----~~~~v~~~~~d~~~~~~~~~~~~~~fD  148 (523)
                      ..+.+|||||||+|..+..+++..+..+|+++|+|+.|++.|+++...     ...+++++++|+.+. +  +..+++||
T Consensus       107 ~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~-l--~~~~~~fD  183 (314)
T 2b2c_A          107 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEF-L--KNHKNEFD  183 (314)
T ss_dssp             SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHH-H--HHCTTCEE
T ss_pred             CCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHH-H--HhcCCCce
Confidence            466899999999999999999887778999999999999999997643     246899999998752 1  12467899


Q ss_pred             EEEE
Q 009871          149 IVTM  152 (523)
Q Consensus       149 ~V~~  152 (523)
                      +|++
T Consensus       184 ~Ii~  187 (314)
T 2b2c_A          184 VIIT  187 (314)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9998

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=98.71  E-value=4.1e-08  Score=99.41  Aligned_cols=119  Identities=16%  Similarity=0.148  Sum_probs=83.4

Q ss_pred             HHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCC---------------------------------------CEEEE
Q 009871          323 MAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSA---------------------------------------DLVVA  363 (523)
Q Consensus       323 la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~---------------------------------------~~V~~  363 (523)
                      ||..|.......++..|||++||+|.+++.+|..+.                                       .+|++
T Consensus       189 lAa~ll~l~~~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~G  268 (393)
T 3k0b_A          189 MAAALVLLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIG  268 (393)
T ss_dssp             HHHHHHHHSCCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEE
T ss_pred             HHHHHHHHhCCCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEE
Confidence            444444434445778999999999988877776532                                       35999


Q ss_pred             EcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCccEEEEccccCCC-----CChHHHHHHHHH
Q 009871          364 TDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIP-----EAILPLFATAKE  438 (523)
Q Consensus       364 ~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~-----~~~~~l~~~l~~  438 (523)
                      +|+|+.|++.|+.|+..+++.   ..+.+...|+.+..        .+.+||+|+++.. |..     ..+..+.+.+.+
T Consensus       269 vDid~~al~~Ar~Na~~~gl~---~~I~~~~~D~~~~~--------~~~~fD~Iv~NPP-Yg~rl~~~~~l~~ly~~lg~  336 (393)
T 3k0b_A          269 GDIDARLIEIAKQNAVEAGLG---DLITFRQLQVADFQ--------TEDEYGVVVANPP-YGERLEDEEAVRQLYREMGI  336 (393)
T ss_dssp             EESCHHHHHHHHHHHHHTTCT---TCSEEEECCGGGCC--------CCCCSCEEEECCC-CCCSHHHHHHHHHHHHHHHH
T ss_pred             EECCHHHHHHHHHHHHHcCCC---CceEEEECChHhCC--------CCCCCCEEEECCC-CccccCCchhHHHHHHHHHH
Confidence            999999999999999999886   45677666554321        1358999999754 442     345567777777


Q ss_pred             HhhccCCCCCCCCCcEEEEEEe
Q 009871          439 LTASSNKSLREDQQPAFILCHI  460 (523)
Q Consensus       439 ll~~~~~~~~~~~~g~~~l~~~  460 (523)
                      .|+.       -+++.+++...
T Consensus       337 ~lk~-------~~g~~~~iit~  351 (393)
T 3k0b_A          337 VYKR-------MPTWSVYVLTS  351 (393)
T ss_dssp             HHHT-------CTTCEEEEEEC
T ss_pred             HHhc-------CCCCEEEEEEC
Confidence            7732       24777766554

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=98.71  E-value=1.1e-08  Score=100.78  Aligned_cols=76  Identities=21%  Similarity=0.217  Sum_probs=63.2

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhcccc------CCCcEEEEEeeccCCccCCCCCCCce
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDF------TETRVSTFVCDLISDDLSRQISPSSI  147 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~------~~~~v~~~~~d~~~~~~~~~~~~~~f  147 (523)
                      +.+.+|||||||+|..+..++++.+..+|++||+|+.|++.|+++...      ...+++++++|+.+. +  +..+++|
T Consensus        76 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~-l--~~~~~~f  152 (314)
T 1uir_A           76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAY-L--ERTEERY  152 (314)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHH-H--HHCCCCE
T ss_pred             CCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHH-H--HhcCCCc
Confidence            467899999999999999999887778999999999999999987532      246899999998752 1  1236789


Q ss_pred             eEEEE
Q 009871          148 DIVTM  152 (523)
Q Consensus       148 D~V~~  152 (523)
                      |+|++
T Consensus       153 D~Ii~  157 (314)
T 1uir_A          153 DVVII  157 (314)
T ss_dssp             EEEEE
T ss_pred             cEEEE
Confidence            99999

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=98.71  E-value=6.5e-09  Score=99.59  Aligned_cols=69  Identities=13%  Similarity=0.082  Sum_probs=52.1

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccc---cCCCcEEEE--EeeccCCccCCCCCCCcee
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKD---FTETRVSTF--VCDLISDDLSRQISPSSID  148 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~---~~~~~v~~~--~~d~~~~~~~~~~~~~~fD  148 (523)
                      .++.+|||||||+|.++..++++   .+|+|||+|+ |+..+++...   ..+.++.++  ++|+.++      ++++||
T Consensus        73 ~~g~~VLDlGcGtG~~s~~la~~---~~V~gvD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l------~~~~fD  142 (265)
T 2oxt_A           73 ELTGRVVDLGCGRGGWSYYAASR---PHVMDVRAYT-LGVGGHEVPRITESYGWNIVKFKSRVDIHTL------PVERTD  142 (265)
T ss_dssp             CCCEEEEEESCTTSHHHHHHHTS---TTEEEEEEEC-CCCSSCCCCCCCCBTTGGGEEEECSCCTTTS------CCCCCS
T ss_pred             CCCCEEEEeCcCCCHHHHHHHHc---CcEEEEECch-hhhhhhhhhhhhhccCCCeEEEecccCHhHC------CCCCCc
Confidence            56789999999999999999887   4599999999 6443332211   111268888  8999865      367899


Q ss_pred             EEEE
Q 009871          149 IVTM  152 (523)
Q Consensus       149 ~V~~  152 (523)
                      +|+|
T Consensus       143 ~V~s  146 (265)
T 2oxt_A          143 VIMC  146 (265)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9998

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=98.71  E-value=1.3e-08  Score=98.37  Aligned_cols=83  Identities=8%  Similarity=0.019  Sum_probs=65.1

Q ss_pred             hhcCCCCCeEEEECCCccccHHHHHhhCCC-CEEEEEeCCHHHHHHHHhccccCC-CcEEEEEeeccCCccCCCCCCCce
Q 009871           70 YFSGAGRKDVLEVGCGAGNTIFPLIAAYPD-VFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQISPSSI  147 (523)
Q Consensus        70 ~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~-~~v~gvD~S~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~f  147 (523)
                      ++...++.+|||+|||+|..+..+++..++ .+|+|+|+|+.+++.++++....+ .+++++++|+..........+++|
T Consensus        78 ~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~f  157 (274)
T 3ajd_A           78 VLNPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFF  157 (274)
T ss_dssp             HHCCCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTCCE
T ss_pred             HhCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhccccC
Confidence            345567889999999999999999997655 899999999999999999865433 479999999976411000025689


Q ss_pred             eEEEE
Q 009871          148 DIVTM  152 (523)
Q Consensus       148 D~V~~  152 (523)
                      |+|++
T Consensus       158 D~Vl~  162 (274)
T 3ajd_A          158 DKILL  162 (274)
T ss_dssp             EEEEE
T ss_pred             CEEEE
Confidence            99998

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=98.71  E-value=2.6e-08  Score=103.54  Aligned_cols=72  Identities=22%  Similarity=0.267  Sum_probs=59.8

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCC--CcEEEEEeeccCCccCCCCCCCceeEEE
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQISPSSIDIVT  151 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~V~  151 (523)
                      .++.+|||||||+|.++..+++. +..+|+|+|+|+ |++.|+++....+  .+++++++|+.+.    +++ ++||+|+
T Consensus       157 ~~~~~VLDiGcGtG~la~~la~~-~~~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~~----~~~-~~fD~Iv  229 (480)
T 3b3j_A          157 FKDKIVLDVGCGSGILSFFAAQA-GARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEV----SLP-EQVDIII  229 (480)
T ss_dssp             TTTCEEEEESCSTTHHHHHHHHT-TCSEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTTC----CCS-SCEEEEE
T ss_pred             cCCCEEEEecCcccHHHHHHHHc-CCCEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchhhC----ccC-CCeEEEE
Confidence            46789999999999999988875 456899999999 9999998764432  6799999999876    333 5899999


Q ss_pred             E
Q 009871          152 M  152 (523)
Q Consensus       152 ~  152 (523)
                      +
T Consensus       230 s  230 (480)
T 3b3j_A          230 S  230 (480)
T ss_dssp             C
T ss_pred             E
Confidence            9

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=98.71  E-value=1.5e-08  Score=98.92  Aligned_cols=120  Identities=12%  Similarity=0.194  Sum_probs=80.9

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhcccc-----CCCcEEEEEeeccCCccCCCCCCCcee
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDF-----TETRVSTFVCDLISDDLSRQISPSSID  148 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~-----~~~~v~~~~~d~~~~~~~~~~~~~~fD  148 (523)
                      +.+.+|||||||+|..+..+++..+..+|+++|+|+.|++.|+++...     ...+++++++|+.+. +  +..+++||
T Consensus        89 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~-l--~~~~~~fD  165 (296)
T 1inl_A           89 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEY-V--RKFKNEFD  165 (296)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHH-G--GGCSSCEE
T ss_pred             CCCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHH-H--hhCCCCce
Confidence            456899999999999999999886678999999999999999997531     246899999998642 1  12357899


Q ss_pred             EEEEcccc---ccceee------ec-ceEEecCCeEEEe-----eCH---HHHHHHHHhCCCcEEEE
Q 009871          149 IVTMERLT---GKDQKI------SE-NFYVRGDGTRAFY-----FSN---DFLTSLFKENGFDVEEL  197 (523)
Q Consensus       149 ~V~~~~~~---~~~~~~------~~-~~~~~~~g~~~~~-----~~~---~~l~~ll~~~Gf~~~~~  197 (523)
                      +|++.-..   .....+      .. .-.++++|.++..     +..   ..+.+.+++. |..+..
T Consensus       166 ~Ii~d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~-F~~v~~  231 (296)
T 1inl_A          166 VIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETEDPFYDIGWFKLAYRRISKV-FPITRV  231 (296)
T ss_dssp             EEEEEC----------CCSHHHHHHHHHHEEEEEEEEEECCCTTTTHHHHHHHHHHHHHH-CSEEEE
T ss_pred             EEEEcCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEccCcccCHHHHHHHHHHHHHH-CCceEE
Confidence            99982110   110000      00 1257888888764     222   3445556655 665544

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=98.70  E-value=9.1e-09  Score=111.93  Aligned_cols=140  Identities=13%  Similarity=0.148  Sum_probs=90.3

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCC---CcEEEEEeeccCCccCCCCCCCceeEE
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE---TRVSTFVCDLISDDLSRQISPSSIDIV  150 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~---~~v~~~~~d~~~~~~~~~~~~~~fD~V  150 (523)
                      .++.+|||+|||+|.++..++..+ ..+|+|||+|+.|++.|+++...++   .+++++++|+.+. +  +...++||+|
T Consensus       538 ~~g~~VLDlg~GtG~~sl~aa~~g-a~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~-l--~~~~~~fD~I  613 (703)
T 3v97_A          538 SKGKDFLNLFSYTGSATVHAGLGG-ARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAW-L--REANEQFDLI  613 (703)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHH-H--HHCCCCEEEE
T ss_pred             cCCCcEEEeeechhHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHH-H--HhcCCCccEE
Confidence            367899999999999999998864 3469999999999999999875443   3799999999752 1  2235789999


Q ss_pred             EE--cccccccee-------------ee-c-ceEEecCCeEEEeeCH---HHHHHHHHhCCCcEEEEEeEeeeeeecccC
Q 009871          151 TM--ERLTGKDQK-------------IS-E-NFYVRGDGTRAFYFSN---DFLTSLFKENGFDVEELGLCCKQVENRARE  210 (523)
Q Consensus       151 ~~--~~~~~~~~~-------------~~-~-~~~~~~~g~~~~~~~~---~~l~~ll~~~Gf~~~~~~~~~~~~~~~~~~  210 (523)
                      ++  ..| .....             +. . .-.++++|.+++....   ..-.+.+.+.||+...+...... ......
T Consensus       614 i~DPP~f-~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~~~~~~~~~~l~~~g~~~~~i~~~~lp-~df~~~  691 (703)
T 3v97_A          614 FIDPPTF-SNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNKRGFRMDLDGLAKLGLKAQEITQKTLS-QDFARN  691 (703)
T ss_dssp             EECCCSB-C-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECCTTCCCCHHHHHHTTEEEEECTTTTCC-GGGTTC
T ss_pred             EECCccc-cCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccccCHHHHHHcCCceeeeeeccCC-CCCCCC
Confidence            99  222 11110             00 0 1257788888764322   22356777888875444322211 122233


Q ss_pred             ccceeEEEE
Q 009871          211 LVMNRRWVQ  219 (523)
Q Consensus       211 ~~~~r~~~~  219 (523)
                      ..+.++|.-
T Consensus       692 ~~ih~~w~i  700 (703)
T 3v97_A          692 RQIHNCWLI  700 (703)
T ss_dssp             SSCCEEEEE
T ss_pred             CcceEEEEE
Confidence            345677754

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=98.70  E-value=1.3e-07  Score=95.33  Aligned_cols=121  Identities=16%  Similarity=0.081  Sum_probs=84.6

Q ss_pred             HHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCC---------------------------------------CEEE
Q 009871          322 LMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSA---------------------------------------DLVV  362 (523)
Q Consensus       322 ~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~---------------------------------------~~V~  362 (523)
                      .||..|.......++..|||.+||+|.+++.+|..+.                                       .+|+
T Consensus       181 ~LAaall~l~~~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~  260 (384)
T 3ldg_A          181 NMAAAIILLSNWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDIS  260 (384)
T ss_dssp             HHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEE
T ss_pred             HHHHHHHHHhCCCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEE
Confidence            3555544444445788999999999988877776432                                       3599


Q ss_pred             EEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCccEEEEccccCC----CCChHHHHHHHHH
Q 009871          363 ATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYI----PEAILPLFATAKE  438 (523)
Q Consensus       363 ~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~fD~Ii~~d~~y~----~~~~~~l~~~l~~  438 (523)
                      ++|+|+.|++.|+.|+..+++.   ..+.+...|..+..        .+.+||+|+++.....    ...+..+.+.+.+
T Consensus       261 GvDid~~al~~Ar~Na~~~gl~---~~I~~~~~D~~~l~--------~~~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~  329 (384)
T 3ldg_A          261 GFDFDGRMVEIARKNAREVGLE---DVVKLKQMRLQDFK--------TNKINGVLISNPPYGERLLDDKAVDILYNEMGE  329 (384)
T ss_dssp             EEESCHHHHHHHHHHHHHTTCT---TTEEEEECCGGGCC--------CCCCSCEEEECCCCTTTTSCHHHHHHHHHHHHH
T ss_pred             EEECCHHHHHHHHHHHHHcCCC---CceEEEECChHHCC--------ccCCcCEEEECCchhhccCCHHHHHHHHHHHHH
Confidence            9999999999999999999886   45777666554321        1358999998654332    1345667777777


Q ss_pred             HhhccCCCCCCCCCcEEEEEEe
Q 009871          439 LTASSNKSLREDQQPAFILCHI  460 (523)
Q Consensus       439 ll~~~~~~~~~~~~g~~~l~~~  460 (523)
                      .|+.       -+|+.+++...
T Consensus       330 ~lk~-------~~g~~~~iit~  344 (384)
T 3ldg_A          330 TFAP-------LKTWSQFILTN  344 (384)
T ss_dssp             HHTT-------CTTSEEEEEES
T ss_pred             HHhh-------CCCcEEEEEEC
Confidence            8832       24777776654

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=98.70  E-value=7e-09  Score=106.55  Aligned_cols=126  Identities=11%  Similarity=0.115  Sum_probs=88.2

Q ss_pred             hhcCCCCCeEEEECCCccccHHHHHhhCC-CCEEEEEeCCHHHHHHHHhccccC-CCcEEEEEeeccCCccCCCCCCCce
Q 009871           70 YFSGAGRKDVLEVGCGAGNTIFPLIAAYP-DVFVYACDFSPRAVNLVMTHKDFT-ETRVSTFVCDLISDDLSRQISPSSI  147 (523)
Q Consensus        70 ~~~~~~~~~iLDiGcG~G~~~~~l~~~~~-~~~v~gvD~S~~~l~~a~~~~~~~-~~~v~~~~~d~~~~~~~~~~~~~~f  147 (523)
                      .+...++.+|||+|||+|..+..+++..+ ..+|+|+|+|+.+++.++++.... ..++.+.++|+..+.   ...+++|
T Consensus       100 ~L~~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~---~~~~~~F  176 (456)
T 3m4x_A          100 AAAAKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELV---PHFSGFF  176 (456)
T ss_dssp             HHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHH---HHHTTCE
T ss_pred             HcCCCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhh---hhccccC
Confidence            34556789999999999999999998743 478999999999999999987543 356899999987541   1235789


Q ss_pred             eEEEE-cc-----ccccc--------------------eeeec-ceEEecCCeEEEee-------CHHHHHHHHHhCCCc
Q 009871          148 DIVTM-ER-----LTGKD--------------------QKISE-NFYVRGDGTRAFYF-------SNDFLTSLFKENGFD  193 (523)
Q Consensus       148 D~V~~-~~-----~~~~~--------------------~~~~~-~~~~~~~g~~~~~~-------~~~~l~~ll~~~Gf~  193 (523)
                      |+|++ ..     .....                    ..+.. ..+++++|.++|-.       ..+.+..++++.||+
T Consensus       177 D~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~~~l~~~~~~  256 (456)
T 3m4x_A          177 DRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTFAPEENEEIISWLVENYPVT  256 (456)
T ss_dssp             EEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCCCGGGTHHHHHHHHHHSSEE
T ss_pred             CEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeecccccCHHHHHHHHHhCCCE
Confidence            99998 10     00000                    00000 12578899888732       345577888888877


Q ss_pred             EEEEE
Q 009871          194 VEELG  198 (523)
Q Consensus       194 ~~~~~  198 (523)
                      ++.+.
T Consensus       257 l~~~~  261 (456)
T 3m4x_A          257 IEEIP  261 (456)
T ss_dssp             EECCC
T ss_pred             EEecc
Confidence            66553

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=98.69  E-value=3.6e-08  Score=93.47  Aligned_cols=79  Identities=18%  Similarity=0.177  Sum_probs=61.1

Q ss_pred             cccchhhhHHHHhhhhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccC
Q 009871           56 FFKDRHYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLIS  135 (523)
Q Consensus        56 f~~~~~~l~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~  135 (523)
                      |..+...+ ..+-+.+...++.+|||||||+|.++..++++. ..+|+|+|+|+.|++.++++ .  ..+++++++|+.+
T Consensus        13 fl~d~~i~-~~iv~~~~~~~~~~VLDiG~G~G~lt~~L~~~~-~~~v~avEid~~~~~~~~~~-~--~~~v~~i~~D~~~   87 (249)
T 3ftd_A           13 LLVSEGVL-KKIAEELNIEEGNTVVEVGGGTGNLTKVLLQHP-LKKLYVIELDREMVENLKSI-G--DERLEVINEDASK   87 (249)
T ss_dssp             CEECHHHH-HHHHHHTTCCTTCEEEEEESCHHHHHHHHTTSC-CSEEEEECCCHHHHHHHTTS-C--CTTEEEECSCTTT
T ss_pred             ccCCHHHH-HHHHHhcCCCCcCEEEEEcCchHHHHHHHHHcC-CCeEEEEECCHHHHHHHHhc-c--CCCeEEEEcchhh
Confidence            44343333 333344555678899999999999999999883 47899999999999999987 2  4679999999998


Q ss_pred             CccC
Q 009871          136 DDLS  139 (523)
Q Consensus       136 ~~~~  139 (523)
                      .+++
T Consensus        88 ~~~~   91 (249)
T 3ftd_A           88 FPFC   91 (249)
T ss_dssp             CCGG
T ss_pred             CChh
Confidence            8544

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=98.69  E-value=3e-08  Score=96.16  Aligned_cols=86  Identities=17%  Similarity=0.135  Sum_probs=63.3

Q ss_pred             HHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcc
Q 009871          324 AAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHI  403 (523)
Q Consensus       324 a~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~  403 (523)
                      ++.+.......++.+|||+|||+|.++..++..+ .+|+++|+|+.+++.+++++..++..   .++.+...|..+.   
T Consensus        17 ~~~i~~~~~~~~~~~VLDiG~G~G~lt~~L~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~---~~v~~~~~D~~~~---   89 (285)
T 1zq9_A           17 INSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKA-KKVVACELDPRLVAELHKRVQGTPVA---SKLQVLVGDVLKT---   89 (285)
T ss_dssp             HHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHHS-SEEEEEESCHHHHHHHHHHHTTSTTG---GGEEEEESCTTTS---
T ss_pred             HHHHHHhcCCCCCCEEEEEcCcccHHHHHHHhhC-CEEEEEECCHHHHHHHHHHHHhcCCC---CceEEEEcceecc---
Confidence            3344443344578899999999999998888885 48999999999999999998765442   3567766655432   


Q ss_pred             hhhhhhcCCCccEEEEccc
Q 009871          404 EAIKEENNEGFEVILGTDV  422 (523)
Q Consensus       404 ~~~~~~~~~~fD~Ii~~d~  422 (523)
                            +...||+|+++-.
T Consensus        90 ------~~~~fD~vv~nlp  102 (285)
T 1zq9_A           90 ------DLPFFDTCVANLP  102 (285)
T ss_dssp             ------CCCCCSEEEEECC
T ss_pred             ------cchhhcEEEEecC
Confidence                  1237999999533

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=98.69  E-value=5.5e-08  Score=97.14  Aligned_cols=124  Identities=10%  Similarity=0.020  Sum_probs=86.1

Q ss_pred             CCCeEEEECCCccHHHHHHHhcCC------CEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhh
Q 009871          335 AGKKVLELGCGCGGICSMVAAGSA------DLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKE  408 (523)
Q Consensus       335 ~~~~VLElG~G~G~l~~~~a~~~~------~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~  408 (523)
                      ++.+|||+|||+|.++..++....      .+|+++|+++.+++.|+.|+..++.     .+.+...|....        
T Consensus       130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~-----~~~i~~~D~l~~--------  196 (344)
T 2f8l_A          130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ-----KMTLLHQDGLAN--------  196 (344)
T ss_dssp             SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC-----CCEEEESCTTSC--------
T ss_pred             CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCC-----CceEEECCCCCc--------
Confidence            567999999999988888776542      5899999999999999999988765     234444443321        


Q ss_pred             hcCCCccEEEEccccCCCCC-----------------h-HHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec---CCChh
Q 009871          409 ENNEGFEVILGTDVSYIPEA-----------------I-LPLFATAKELTASSNKSLREDQQPAFILCHIFR---QVDEP  467 (523)
Q Consensus       409 ~~~~~fD~Ii~~d~~y~~~~-----------------~-~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r---~~~~~  467 (523)
                      ....+||+|+++.++.....                 . ..++..+.++|         +|+|.+++..+..   .....
T Consensus       197 ~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~L---------k~gG~~~~v~p~~~~~~~~~~  267 (344)
T 2f8l_A          197 LLVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYT---------KPGGYLFFLVPDAMFGTSDFA  267 (344)
T ss_dssp             CCCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTE---------EEEEEEEEEEEGGGGGSTTHH
T ss_pred             cccCCccEEEECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHh---------CCCCEEEEEECchhcCCchHH
Confidence            12468999999977421110                 1 25788888888         5688887776442   22345


Q ss_pred             HHHHHHHHcCCEE
Q 009871          468 SMLSAATQCGFRL  480 (523)
Q Consensus       468 ~~~~~~~~~gf~~  480 (523)
                      .+.+.+.+.|+..
T Consensus       268 ~ir~~l~~~~~~~  280 (344)
T 2f8l_A          268 KVDKFIKKNGHIE  280 (344)
T ss_dssp             HHHHHHHHHEEEE
T ss_pred             HHHHHHHhCCeEE
Confidence            6677777777643

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=98.69  E-value=1.9e-08  Score=91.59  Aligned_cols=67  Identities=16%  Similarity=0.222  Sum_probs=51.5

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCC----CCC---CCc
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSR----QIS---PSS  146 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~----~~~---~~~  146 (523)
                      .++.+|||+|||+|..+..++++  +.+|+|+|+++.+          ...+++++++|+.+.....    .+.   .++
T Consensus        24 ~~g~~VLDlG~G~G~~s~~la~~--~~~V~gvD~~~~~----------~~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~   91 (191)
T 3dou_A           24 RKGDAVIEIGSSPGGWTQVLNSL--ARKIISIDLQEME----------EIAGVRFIRCDIFKETIFDDIDRALREEGIEK   91 (191)
T ss_dssp             CTTCEEEEESCTTCHHHHHHTTT--CSEEEEEESSCCC----------CCTTCEEEECCTTSSSHHHHHHHHHHHHTCSS
T ss_pred             CCCCEEEEEeecCCHHHHHHHHc--CCcEEEEeccccc----------cCCCeEEEEccccCHHHHHHHHHHhhcccCCc
Confidence            56889999999999999999988  6789999999852          1257899999998652100    011   148


Q ss_pred             eeEEEE
Q 009871          147 IDIVTM  152 (523)
Q Consensus       147 fD~V~~  152 (523)
                      ||+|++
T Consensus        92 ~D~Vls   97 (191)
T 3dou_A           92 VDDVVS   97 (191)
T ss_dssp             EEEEEE
T ss_pred             ceEEec
Confidence            999998

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=98.68  E-value=1.9e-08  Score=97.56  Aligned_cols=120  Identities=18%  Similarity=0.210  Sum_probs=81.7

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhcccc-----CCCcEEEEEeeccCCccCCCCCCCcee
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDF-----TETRVSTFVCDLISDDLSRQISPSSID  148 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~-----~~~~v~~~~~d~~~~~~~~~~~~~~fD  148 (523)
                      +++.+|||||||+|..+..+++..+..+|+++|+++.|++.|+++...     ..++++++++|+.+. +  +..+++||
T Consensus        77 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~-l--~~~~~~fD  153 (283)
T 2i7c_A           77 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKF-L--ENVTNTYD  153 (283)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHH-H--HHCCSCEE
T ss_pred             CCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHH-H--HhCCCCce
Confidence            567899999999999999999887778999999999999999997643     247899999998752 1  11257899


Q ss_pred             EEEEccc--cccceee------ec-ceEEecCCeEEEe-----eCHH---HHHHHHHhCCCcEEEE
Q 009871          149 IVTMERL--TGKDQKI------SE-NFYVRGDGTRAFY-----FSND---FLTSLFKENGFDVEEL  197 (523)
Q Consensus       149 ~V~~~~~--~~~~~~~------~~-~~~~~~~g~~~~~-----~~~~---~l~~ll~~~Gf~~~~~  197 (523)
                      +|++...  ......+      .. .-.++++|.++..     +..+   .+.+.+++. |..+..
T Consensus       154 ~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~-F~~v~~  218 (283)
T 2i7c_A          154 VIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCESLWIHVGTIKNMIGYAKKL-FKKVEY  218 (283)
T ss_dssp             EEEEECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTT-CSEEEE
T ss_pred             EEEEcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEECCCcccCHHHHHHHHHHHHHH-CCceEE
Confidence            9999111  0111110      00 1257888888753     2333   344555554 765544

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=98.68  E-value=1e-08  Score=98.70  Aligned_cols=69  Identities=17%  Similarity=0.138  Sum_probs=52.8

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccc---cCCCcEEEE--EeeccCCccCCCCCCCcee
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKD---FTETRVSTF--VCDLISDDLSRQISPSSID  148 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~---~~~~~v~~~--~~d~~~~~~~~~~~~~~fD  148 (523)
                      .++.+|||+|||+|.++..++++   .+|+|||+|+ |+..++++..   ..+.++.++  ++|+..+      ++++||
T Consensus        81 ~~g~~VLDlGcGtG~~s~~la~~---~~V~gVD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l------~~~~fD  150 (276)
T 2wa2_A           81 ELKGTVVDLGCGRGSWSYYAASQ---PNVREVKAYT-LGTSGHEKPRLVETFGWNLITFKSKVDVTKM------EPFQAD  150 (276)
T ss_dssp             CCCEEEEEESCTTCHHHHHHHTS---TTEEEEEEEC-CCCTTSCCCCCCCCTTGGGEEEECSCCGGGC------CCCCCS
T ss_pred             CCCCEEEEeccCCCHHHHHHHHc---CCEEEEECch-hhhhhhhchhhhhhcCCCeEEEeccCcHhhC------CCCCcC
Confidence            46789999999999999999887   3599999999 7544433221   111268899  8999865      367899


Q ss_pred             EEEE
Q 009871          149 IVTM  152 (523)
Q Consensus       149 ~V~~  152 (523)
                      +|+|
T Consensus       151 ~Vvs  154 (276)
T 2wa2_A          151 TVLC  154 (276)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9998

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=98.67  E-value=5.1e-08  Score=95.26  Aligned_cols=79  Identities=22%  Similarity=0.232  Sum_probs=57.8

Q ss_pred             CCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcC
Q 009871          332 TIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENN  411 (523)
Q Consensus       332 ~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~  411 (523)
                      ...++.+|||+|||+|.++..++.. +.+|+++|+|+.+++.+++|+..++.    .++.+...|..+.         +.
T Consensus        39 ~~~~~~~VLDiG~G~G~lt~~La~~-~~~v~~vDi~~~~~~~a~~~~~~~~~----~~v~~~~~D~~~~---------~~  104 (299)
T 2h1r_A           39 KIKSSDIVLEIGCGTGNLTVKLLPL-AKKVITIDIDSRMISEVKKRCLYEGY----NNLEVYEGDAIKT---------VF  104 (299)
T ss_dssp             CCCTTCEEEEECCTTSTTHHHHTTT-SSEEEEECSCHHHHHHHHHHHHHTTC----CCEEC----CCSS---------CC
T ss_pred             CCCCcCEEEEEcCcCcHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHcCC----CceEEEECchhhC---------Cc
Confidence            3457789999999999888888877 45899999999999999999987654    3455555554332         12


Q ss_pred             CCccEEEEccccCC
Q 009871          412 EGFEVILGTDVSYI  425 (523)
Q Consensus       412 ~~fD~Ii~~d~~y~  425 (523)
                      .+||+|+++ ..|+
T Consensus       105 ~~~D~Vv~n-~py~  117 (299)
T 2h1r_A          105 PKFDVCTAN-IPYK  117 (299)
T ss_dssp             CCCSEEEEE-CCGG
T ss_pred             ccCCEEEEc-CCcc
Confidence            489999985 4444

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=98.67  E-value=2.7e-08  Score=91.07  Aligned_cols=112  Identities=15%  Similarity=0.186  Sum_probs=73.3

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCC--CCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccC------------
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYP--DVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLS------------  139 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~--~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~------------  139 (523)
                      .++.+|||+|||+|..+..++++.+  +.+|+|+|+|+.+          ...+++++++|+.+....            
T Consensus        21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~----------~~~~v~~~~~d~~~~~~~~~~~~~~i~~~~   90 (201)
T 2plw_A           21 KKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD----------PIPNVYFIQGEIGKDNMNNIKNINYIDNMN   90 (201)
T ss_dssp             CTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC----------CCTTCEEEECCTTTTSSCCC----------
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC----------CCCCceEEEccccchhhhhhcccccccccc
Confidence            4678999999999999999999976  6899999999931          124689999999865200            


Q ss_pred             ---------CCCCCCceeEEEEc---ccc-----ccce-------eee-cceEEecCCeEEEe-e---CHHHHHHHHHhC
Q 009871          140 ---------RQISPSSIDIVTME---RLT-----GKDQ-------KIS-ENFYVRGDGTRAFY-F---SNDFLTSLFKEN  190 (523)
Q Consensus       140 ---------~~~~~~~fD~V~~~---~~~-----~~~~-------~~~-~~~~~~~~g~~~~~-~---~~~~l~~ll~~~  190 (523)
                               ..+++++||+|++.   ...     ....       .+. -...++++|.++.. +   +..++...+.. 
T Consensus        91 ~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~l~~~l~~-  169 (201)
T 2plw_A           91 NNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYLGSQTNNLKTYLKG-  169 (201)
T ss_dssp             -CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTTHHHHHHHHHT-
T ss_pred             chhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeCCCCHHHHHHHHHH-
Confidence                     00456799999981   110     0000       000 01257888887652 2   34567777765 


Q ss_pred             CCcEEE
Q 009871          191 GFDVEE  196 (523)
Q Consensus       191 Gf~~~~  196 (523)
                      .|..+.
T Consensus       170 ~f~~v~  175 (201)
T 2plw_A          170 MFQLVH  175 (201)
T ss_dssp             TEEEEE
T ss_pred             HHheEE
Confidence            465443

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=98.67  E-value=6.6e-08  Score=98.95  Aligned_cols=115  Identities=10%  Similarity=0.056  Sum_probs=76.7

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEEEc
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTME  153 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~  153 (523)
                      .++.+|||+|||+|.++..+++.  ..+|+|+|+|+.|++.|+++...++..++|+++|+.+.    . + .+||+|++.
T Consensus       289 ~~~~~VLDlgcG~G~~sl~la~~--~~~V~gvD~s~~ai~~A~~n~~~ngl~v~~~~~d~~~~----~-~-~~fD~Vv~d  360 (425)
T 2jjq_A          289 VEGEKILDMYSGVGTFGIYLAKR--GFNVKGFDSNEFAIEMARRNVEINNVDAEFEVASDREV----S-V-KGFDTVIVD  360 (425)
T ss_dssp             CCSSEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCCEEEEECCTTTC----C-C-TTCSEEEEC
T ss_pred             CCCCEEEEeeccchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCcEEEEECChHHc----C-c-cCCCEEEEc
Confidence            46789999999999999999987  45799999999999999998754332399999999865    1 2 289999991


Q ss_pred             cccc-cceee-ecceEEecCCeEEEeeCHHHHHHHHHhCCCcEEE
Q 009871          154 RLTG-KDQKI-SENFYVRGDGTRAFYFSNDFLTSLFKENGFDVEE  196 (523)
Q Consensus       154 ~~~~-~~~~~-~~~~~~~~~g~~~~~~~~~~l~~ll~~~Gf~~~~  196 (523)
                      .-.. ....+ .....++++|..+.-..+..+.+-+....|.+.+
T Consensus       361 PPr~g~~~~~~~~l~~l~p~givyvsc~p~tlarDl~~l~y~l~~  405 (425)
T 2jjq_A          361 PPRAGLHPRLVKRLNREKPGVIVYVSCNPETFARDVKMLDYRIDE  405 (425)
T ss_dssp             CCTTCSCHHHHHHHHHHCCSEEEEEESCHHHHHHHHHHSSCCEEE
T ss_pred             CCccchHHHHHHHHHhcCCCcEEEEECChHHHHhHHhhCeEEEEE
Confidence            1100 00001 0011245666665555666665544433244443

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=98.66  E-value=1.6e-08  Score=97.96  Aligned_cols=74  Identities=14%  Similarity=0.166  Sum_probs=61.2

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccc----c-------CCCcEEEEEeeccCCccCCCC
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKD----F-------TETRVSTFVCDLISDDLSRQI  142 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~----~-------~~~~v~~~~~d~~~~~~~~~~  142 (523)
                      ..+.+|||||||+|..+..+++. +..+|++||+++.|++.|+++..    .       ...+++++++|+.+. +  +.
T Consensus        74 ~~~~~VLdiG~G~G~~~~~l~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~-l--~~  149 (281)
T 1mjf_A           74 PKPKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEF-I--KN  149 (281)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHH-H--HH
T ss_pred             CCCCeEEEEcCCcCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHH-h--cc
Confidence            46789999999999999999988 67799999999999999998761    1       246899999998642 1  11


Q ss_pred             CCCceeEEEE
Q 009871          143 SPSSIDIVTM  152 (523)
Q Consensus       143 ~~~~fD~V~~  152 (523)
                       +++||+|++
T Consensus       150 -~~~fD~Ii~  158 (281)
T 1mjf_A          150 -NRGFDVIIA  158 (281)
T ss_dssp             -CCCEEEEEE
T ss_pred             -cCCeeEEEE
Confidence             578999999

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=98.66  E-value=1.5e-08  Score=102.64  Aligned_cols=73  Identities=15%  Similarity=0.106  Sum_probs=57.5

Q ss_pred             CCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871           75 GRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM  152 (523)
Q Consensus        75 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~  152 (523)
                      ++.+|||+|||+|..+..+++.  ++.|+|+|+|+.|++.|+++...++...++.++|+.+. ++ .. .+.||+|++
T Consensus       214 ~g~~VLDlg~GtG~~sl~~a~~--ga~V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~~-l~-~~-~~~fD~Ii~  286 (393)
T 4dmg_A          214 PGERVLDVYSYVGGFALRAARK--GAYALAVDKDLEALGVLDQAALRLGLRVDIRHGEALPT-LR-GL-EGPFHHVLL  286 (393)
T ss_dssp             TTCEEEEESCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHHH-HH-TC-CCCEEEEEE
T ss_pred             CCCeEEEcccchhHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHHH-HH-Hh-cCCCCEEEE
Confidence            4889999999999999999987  45599999999999999998755443346778888753 11 12 334999998

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=98.65  E-value=3.5e-08  Score=95.04  Aligned_cols=116  Identities=14%  Similarity=0.084  Sum_probs=72.1

Q ss_pred             hhHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCC--CCCCceEEE--
Q 009871          318 ESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKP--PFLAKLITK--  393 (523)
Q Consensus       318 ~~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~--~~~~~v~~~--  393 (523)
                      .++..|.+.+.. ..+.++.+|||||||+|.++..++..  .+|+++|+++ |+..++++    ...  ....++.+.  
T Consensus        66 R~a~KL~~i~~~-~~~~~g~~VLDlGcGtG~~s~~la~~--~~V~gVD~s~-m~~~a~~~----~~~~~~~~~~v~~~~~  137 (276)
T 2wa2_A           66 RGTAKLAWIDER-GGVELKGTVVDLGCGRGSWSYYAASQ--PNVREVKAYT-LGTSGHEK----PRLVETFGWNLITFKS  137 (276)
T ss_dssp             HHHHHHHHHHHT-TSCCCCEEEEEESCTTCHHHHHHHTS--TTEEEEEEEC-CCCTTSCC----CCCCCCTTGGGEEEEC
T ss_pred             hHHHHHHHHHHc-CCCCCCCEEEEeccCCCHHHHHHHHc--CCEEEEECch-hhhhhhhc----hhhhhhcCCCeEEEec
Confidence            455556666655 44457889999999999998888887  5799999998 53332211    110  000134443  


Q ss_pred             eeecCCCCcchhhhhhcCCCccEEEEccccCCCCCh----H---HHHHHHHHHhhccCCCCCCCCCc--EEEEEEe
Q 009871          394 RLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAI----L---PLFATAKELTASSNKSLREDQQP--AFILCHI  460 (523)
Q Consensus       394 ~ldw~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~----~---~l~~~l~~ll~~~~~~~~~~~~g--~~~l~~~  460 (523)
                      ..|..         .+++++||+|++.-. ......    .   .+++.+.++|         +|||  .+++...
T Consensus       138 ~~D~~---------~l~~~~fD~Vvsd~~-~~~~~~~~d~~~~l~~L~~~~r~L---------kpGG~~~~v~~~~  194 (276)
T 2wa2_A          138 KVDVT---------KMEPFQADTVLCDIG-ESNPTAAVEASRTLTVLNVISRWL---------EYNQGCGFCVKVL  194 (276)
T ss_dssp             SCCGG---------GCCCCCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHH---------HHSTTCEEEEEES
T ss_pred             cCcHh---------hCCCCCcCEEEECCC-cCCCchhhhHHHHHHHHHHHHHHh---------ccCCCcEEEEEeC
Confidence            32221         234578999999644 332221    1   3678888999         6799  8777443

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=98.65  E-value=7.9e-09  Score=98.09  Aligned_cols=78  Identities=18%  Similarity=0.164  Sum_probs=61.9

Q ss_pred             HhhhhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCC-CC
Q 009871           67 WGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQIS-PS  145 (523)
Q Consensus        67 ~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~-~~  145 (523)
                      +.+.+...++.+|||||||+|.++..+++.+  .+|+|+|+|+.|++.|+++.. ...+++++++|+.+.    +++ ++
T Consensus        21 i~~~~~~~~~~~VLDiG~G~G~~~~~l~~~~--~~v~~id~~~~~~~~a~~~~~-~~~~v~~~~~D~~~~----~~~~~~   93 (245)
T 1yub_A           21 IIKQLNLKETDTVYEIGTGKGHLTTKLAKIS--KQVTSIELDSHLFNLSSEKLK-LNTRVTLIHQDILQF----QFPNKQ   93 (245)
T ss_dssp             HHHHCCCCSSEEEEECSCCCSSCSHHHHHHS--SEEEESSSSCSSSSSSSCTTT-TCSEEEECCSCCTTT----TCCCSS
T ss_pred             HHHhcCCCCCCEEEEEeCCCCHHHHHHHHhC--CeEEEEECCHHHHHHHHHHhc-cCCceEEEECChhhc----CcccCC
Confidence            3344455677899999999999999999984  789999999999999988764 346799999999877    344 36


Q ss_pred             ceeEEEE
Q 009871          146 SIDIVTM  152 (523)
Q Consensus       146 ~fD~V~~  152 (523)
                      +| .|++
T Consensus        94 ~f-~vv~   99 (245)
T 1yub_A           94 RY-KIVG   99 (245)
T ss_dssp             EE-EEEE
T ss_pred             Cc-EEEE
Confidence            78 4555

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=98.65  E-value=3.6e-08  Score=88.29  Aligned_cols=102  Identities=18%  Similarity=0.027  Sum_probs=70.1

Q ss_pred             CCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871           73 GAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM  152 (523)
Q Consensus        73 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~  152 (523)
                      ..++.+|||||||.                +++|+|+.|++.|+++..   .++++.++|+.++.+. ++++++||+|++
T Consensus        10 ~~~g~~vL~~~~g~----------------v~vD~s~~ml~~a~~~~~---~~~~~~~~d~~~~~~~-~~~~~~fD~V~~   69 (176)
T 2ld4_A           10 ISAGQFVAVVWDKS----------------SPVEALKGLVDKLQALTG---NEGRVSVENIKQLLQS-AHKESSFDIILS   69 (176)
T ss_dssp             CCTTSEEEEEECTT----------------SCHHHHHHHHHHHHHHTT---TTSEEEEEEGGGGGGG-CCCSSCEEEEEE
T ss_pred             CCCCCEEEEecCCc----------------eeeeCCHHHHHHHHHhcc---cCcEEEEechhcCccc-cCCCCCEeEEEE
Confidence            46789999999996                238999999999998753   2489999999976211 127889999999


Q ss_pred             ---cccc-ccce-eeec-ceEEecCCeEEEe-------------eCHHHHHHHHHhCCCcEE
Q 009871          153 ---ERLT-GKDQ-KISE-NFYVRGDGTRAFY-------------FSNDFLTSLFKENGFDVE  195 (523)
Q Consensus       153 ---~~~~-~~~~-~~~~-~~~~~~~g~~~~~-------------~~~~~l~~ll~~~Gf~~~  195 (523)
                         .... .... .+.+ ...++++|.+++.             ++.+++.++|+++|| +.
T Consensus        70 ~~~l~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf-i~  130 (176)
T 2ld4_A           70 GLVPGSTTLHSAEILAEIARILRPGGCLFLKEPVETAVDNNSKVKTASKLCSALTLSGL-VE  130 (176)
T ss_dssp             CCSTTCCCCCCHHHHHHHHHHEEEEEEEEEEEEEESSSCSSSSSCCHHHHHHHHHHTTC-EE
T ss_pred             CChhhhcccCHHHHHHHHHHHCCCCEEEEEEcccccccccccccCCHHHHHHHHHHCCC-cE
Confidence               1111 1111 1100 1246666665541             258899999999999 44

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=98.64  E-value=6.7e-08  Score=93.67  Aligned_cols=87  Identities=16%  Similarity=0.126  Sum_probs=64.1

Q ss_pred             HHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcc
Q 009871          324 AAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHI  403 (523)
Q Consensus       324 a~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~  403 (523)
                      .+.+.+.....++.+|||||||+|.++..++.. +.+|+++|+|+.+++.+++++..      ..++.+...|..+.+  
T Consensus        39 ~~~Iv~~l~~~~~~~VLEIG~G~G~lT~~La~~-~~~V~aVEid~~li~~a~~~~~~------~~~v~vi~gD~l~~~--  109 (295)
T 3gru_A           39 VNKAVESANLTKDDVVLEIGLGKGILTEELAKN-AKKVYVIEIDKSLEPYANKLKEL------YNNIEIIWGDALKVD--  109 (295)
T ss_dssp             HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEEESCGGGHHHHHHHHHH------CSSEEEEESCTTTSC--
T ss_pred             HHHHHHhcCCCCcCEEEEECCCchHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhcc------CCCeEEEECchhhCC--
Confidence            333434344557889999999999999988887 56899999999999999999873      145777766665431  


Q ss_pred             hhhhhhcCCCccEEEEccccCC
Q 009871          404 EAIKEENNEGFEVILGTDVSYI  425 (523)
Q Consensus       404 ~~~~~~~~~~fD~Ii~~d~~y~  425 (523)
                           ++...||+|+++ +.|+
T Consensus       110 -----~~~~~fD~Iv~N-lPy~  125 (295)
T 3gru_A          110 -----LNKLDFNKVVAN-LPYQ  125 (295)
T ss_dssp             -----GGGSCCSEEEEE-CCGG
T ss_pred             -----cccCCccEEEEe-Cccc
Confidence                 223479999987 4443

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=98.64  E-value=2.1e-08  Score=95.87  Aligned_cols=128  Identities=12%  Similarity=0.049  Sum_probs=83.6

Q ss_pred             CCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHh--cCCCCCCCceEEEeeecCCCCcchhhhhhcCC
Q 009871          335 AGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTA--NLKPPFLAKLITKRLEWGNRDHIEAIKEENNE  412 (523)
Q Consensus       335 ~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~--n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~  412 (523)
                      .+++|||||||+|.++..+++.+ .+|+++|+++.+++.+++++..  ++..  ..++.+...|-.+         +. +
T Consensus        72 ~~~~VL~iG~G~G~~~~~ll~~~-~~v~~veid~~~i~~ar~~~~~~~~~~~--~~rv~~~~~D~~~---------~~-~  138 (262)
T 2cmg_A           72 ELKEVLIVDGFDLELAHQLFKYD-THIDFVQADEKILDSFISFFPHFHEVKN--NKNFTHAKQLLDL---------DI-K  138 (262)
T ss_dssp             CCCEEEEESSCCHHHHHHHTTSS-CEEEEECSCHHHHGGGTTTSTTHHHHHT--CTTEEEESSGGGS---------CC-C
T ss_pred             CCCEEEEEeCCcCHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhhccccC--CCeEEEEechHHH---------HH-h
Confidence            45799999999998888888775 8999999999999999876532  1111  2456554322211         11 5


Q ss_pred             CccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhH---HHHHHHHcCCEEEEEcCCCCC
Q 009871          413 GFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPS---MLSAATQCGFRLVDKWPSKNS  489 (523)
Q Consensus       413 ~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~---~~~~~~~~gf~~~~~~~~~~~  489 (523)
                      +||+|++. .    .....+++.+.++|         +|||.+++...........   +...+++. |.....+....|
T Consensus       139 ~fD~Ii~d-~----~dp~~~~~~~~~~L---------~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~-F~~~~~~~~~vP  203 (262)
T 2cmg_A          139 KYDLIFCL-Q----EPDIHRIDGLKRML---------KEDGVFISVAKHPLLEHVSMQNALKNMGGV-FSVAMPFVAPLR  203 (262)
T ss_dssp             CEEEEEES-S----CCCHHHHHHHHTTE---------EEEEEEEEEEECTTTCHHHHHHHHHHHHTT-CSEEEEECCTTC
T ss_pred             hCCEEEEC-C----CChHHHHHHHHHhc---------CCCcEEEEEcCCcccCHHHHHHHHHHHHHh-CCceEEEEEccC
Confidence            89999985 2    22335899999999         6799998865443333222   33344443 666666554333


Q ss_pred             C
Q 009871          490 A  490 (523)
Q Consensus       490 ~  490 (523)
                      .
T Consensus       204 ~  204 (262)
T 2cmg_A          204 I  204 (262)
T ss_dssp             T
T ss_pred             C
Confidence            3

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=98.64  E-value=2e-08  Score=94.09  Aligned_cols=79  Identities=18%  Similarity=0.244  Sum_probs=61.5

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCC-CCEEEEEeCCHHHHHHHHhccccC--CCcEEEEEeeccCC--ccCCCCCCCcee
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYP-DVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISD--DLSRQISPSSID  148 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~-~~~v~gvD~S~~~l~~a~~~~~~~--~~~v~~~~~d~~~~--~~~~~~~~~~fD  148 (523)
                      .++.+|||||||+|..+..+++..+ +.+|+|+|+|+.+++.|+++....  ..+++++++|+.+.  .++.....++||
T Consensus        68 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D  147 (229)
T 2avd_A           68 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFD  147 (229)
T ss_dssp             TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEE
T ss_pred             cCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCcc
Confidence            4678999999999999999998865 689999999999999999876433  25799999998642  111000116899


Q ss_pred             EEEE
Q 009871          149 IVTM  152 (523)
Q Consensus       149 ~V~~  152 (523)
                      +|++
T Consensus       148 ~v~~  151 (229)
T 2avd_A          148 VAVV  151 (229)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9988

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=98.63  E-value=2.9e-08  Score=94.25  Aligned_cols=84  Identities=8%  Similarity=-0.008  Sum_probs=59.5

Q ss_pred             HHhhhhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCC-C
Q 009871           66 EWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQIS-P  144 (523)
Q Consensus        66 ~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~-~  144 (523)
                      .+-+.+...++.+|||||||+|.++. +. +.+..+|+|+|+++.|++.++++.... .+++++++|+.+.+++..+. +
T Consensus        12 ~iv~~~~~~~~~~VLEIG~G~G~lt~-l~-~~~~~~v~avEid~~~~~~a~~~~~~~-~~v~~i~~D~~~~~~~~~~~~~   88 (252)
T 1qyr_A           12 SIVSAINPQKGQAMVEIGPGLAALTE-PV-GERLDQLTVIELDRDLAARLQTHPFLG-PKLTIYQQDAMTFNFGELAEKM   88 (252)
T ss_dssp             HHHHHHCCCTTCCEEEECCTTTTTHH-HH-HTTCSCEEEECCCHHHHHHHHTCTTTG-GGEEEECSCGGGCCHHHHHHHH
T ss_pred             HHHHhcCCCCcCEEEEECCCCcHHHH-hh-hCCCCeEEEEECCHHHHHHHHHHhccC-CceEEEECchhhCCHHHhhccc
Confidence            33344455677899999999999999 64 443334999999999999999876432 57999999999874432110 1


Q ss_pred             CceeEEEE
Q 009871          145 SSIDIVTM  152 (523)
Q Consensus       145 ~~fD~V~~  152 (523)
                      +..|.|++
T Consensus        89 ~~~~~vvs   96 (252)
T 1qyr_A           89 GQPLRVFG   96 (252)
T ss_dssp             TSCEEEEE
T ss_pred             CCceEEEE
Confidence            23466666

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=98.63  E-value=7.9e-08  Score=98.73  Aligned_cols=126  Identities=19%  Similarity=0.150  Sum_probs=84.5

Q ss_pred             HHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhc--CCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCC
Q 009871          323 MAAVLARNPTIVAGKKVLELGCGCGGICSMVAAG--SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNR  400 (523)
Q Consensus       323 la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~--~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~  400 (523)
                      +++++.+.....++.+|||+|||+|.++..++..  ...+|+++|+++.+++.|             .++.+...|..+.
T Consensus        27 l~~~~~~~~~~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a-------------~~~~~~~~D~~~~   93 (421)
T 2ih2_A           27 VVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP-------------PWAEGILADFLLW   93 (421)
T ss_dssp             HHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC-------------TTEEEEESCGGGC
T ss_pred             HHHHHHHhhccCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC-------------CCCcEEeCChhhc
Confidence            4455544333335679999999999888888875  356899999999998766             2345555444322


Q ss_pred             CcchhhhhhcCCCccEEEEccccCCCCC-----------------------------hHHHHHHHHHHhhccCCCCCCCC
Q 009871          401 DHIEAIKEENNEGFEVILGTDVSYIPEA-----------------------------ILPLFATAKELTASSNKSLREDQ  451 (523)
Q Consensus       401 ~~~~~~~~~~~~~fD~Ii~~d~~y~~~~-----------------------------~~~l~~~l~~ll~~~~~~~~~~~  451 (523)
                              ...++||+|+++........                             ...++..+.++|         ++
T Consensus        94 --------~~~~~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~L---------k~  156 (421)
T 2ih2_A           94 --------EPGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLL---------KP  156 (421)
T ss_dssp             --------CCSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHE---------EE
T ss_pred             --------CccCCCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHh---------CC
Confidence                    12358999999865543221                             225678888888         56


Q ss_pred             CcEEEEEEeecCC---ChhHHHHHHHHcCC
Q 009871          452 QPAFILCHIFRQV---DEPSMLSAATQCGF  478 (523)
Q Consensus       452 ~g~~~l~~~~r~~---~~~~~~~~~~~~gf  478 (523)
                      +|.+.+.......   ....+.+.+.+.|+
T Consensus       157 ~G~~~~i~p~~~l~~~~~~~lr~~l~~~~~  186 (421)
T 2ih2_A          157 GGVLVFVVPATWLVLEDFALLREFLAREGK  186 (421)
T ss_dssp             EEEEEEEEEGGGGTCGGGHHHHHHHHHHSE
T ss_pred             CCEEEEEEChHHhcCccHHHHHHHHHhcCC
Confidence            8988877765422   23467777777776

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=98.62  E-value=4.3e-08  Score=93.86  Aligned_cols=116  Identities=15%  Similarity=0.127  Sum_probs=72.2

Q ss_pred             hhHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCC--CCCceEEE--
Q 009871          318 ESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPP--FLAKLITK--  393 (523)
Q Consensus       318 ~~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~--~~~~v~~~--  393 (523)
                      .++..|.+.+.. ..+.++.+|||||||+|+++..++..  .+|+++|+++ |+..++++    ....  ....+.+.  
T Consensus        58 R~a~KL~~i~~~-~~~~~g~~VLDlGcGtG~~s~~la~~--~~V~gvD~s~-m~~~a~~~----~~~~~~~~~~v~~~~~  129 (265)
T 2oxt_A           58 RGTAKLAWMEER-GYVELTGRVVDLGCGRGGWSYYAASR--PHVMDVRAYT-LGVGGHEV----PRITESYGWNIVKFKS  129 (265)
T ss_dssp             THHHHHHHHHHH-TSCCCCEEEEEESCTTSHHHHHHHTS--TTEEEEEEEC-CCCSSCCC----CCCCCBTTGGGEEEEC
T ss_pred             hHHHHHHHHHHc-CCCCCCCEEEEeCcCCCHHHHHHHHc--CcEEEEECch-hhhhhhhh----hhhhhccCCCeEEEec
Confidence            456667666665 44457889999999999998888877  5799999998 53222211    1100  00134443  


Q ss_pred             eeecCCCCcchhhhhhcCCCccEEEEccccCCCCCh----H---HHHHHHHHHhhccCCCCCCCCCc--EEEEEEe
Q 009871          394 RLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAI----L---PLFATAKELTASSNKSLREDQQP--AFILCHI  460 (523)
Q Consensus       394 ~ldw~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~----~---~l~~~l~~ll~~~~~~~~~~~~g--~~~l~~~  460 (523)
                      ..|..         .+++.+||+|++.-. ......    .   .+++.+.++|         +|||  .+++...
T Consensus       130 ~~D~~---------~l~~~~fD~V~sd~~-~~~~~~~~d~~~~l~~L~~~~r~L---------kpGG~~~fv~kv~  186 (265)
T 2oxt_A          130 RVDIH---------TLPVERTDVIMCDVG-ESSPKWSVESERTIKILELLEKWK---------VKNPSADFVVKVL  186 (265)
T ss_dssp             SCCTT---------TSCCCCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHH---------HHCTTCEEEEEES
T ss_pred             ccCHh---------HCCCCCCcEEEEeCc-ccCCccchhHHHHHHHHHHHHHHh---------ccCCCeEEEEEeC
Confidence            33322         133568999999544 322221    1   2678888999         6799  7777443

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=98.62  E-value=3.1e-08  Score=93.51  Aligned_cols=79  Identities=22%  Similarity=0.314  Sum_probs=61.9

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCC-CCEEEEEeCCHHHHHHHHhccccCC--CcEEEEEeeccCC-c-c---------C
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYP-DVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISD-D-L---------S  139 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~-~~~v~gvD~S~~~l~~a~~~~~~~~--~~v~~~~~d~~~~-~-~---------~  139 (523)
                      .++.+|||||||+|..+..+++..+ +.+|+|+|+|+.+++.|+++....+  .++++.++|+.+. . +         .
T Consensus        59 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~  138 (239)
T 2hnk_A           59 SGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWA  138 (239)
T ss_dssp             HTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGG
T ss_pred             hCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhccccccc
Confidence            4678999999999999999999876 6899999999999999999764322  3599999998642 0 0         1


Q ss_pred             CCCCC--CceeEEEE
Q 009871          140 RQISP--SSIDIVTM  152 (523)
Q Consensus       140 ~~~~~--~~fD~V~~  152 (523)
                      ..|++  ++||+|++
T Consensus       139 ~~f~~~~~~fD~I~~  153 (239)
T 2hnk_A          139 SDFAFGPSSIDLFFL  153 (239)
T ss_dssp             TTTCCSTTCEEEEEE
T ss_pred             ccccCCCCCcCEEEE
Confidence            12333  78999987

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=98.60  E-value=5e-08  Score=92.96  Aligned_cols=81  Identities=11%  Similarity=-0.009  Sum_probs=60.4

Q ss_pred             CCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCCh-------HHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhh
Q 009871          334 VAGKKVLELGCGCGGICSMVAAGSADLVVATDGDS-------IALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAI  406 (523)
Q Consensus       334 ~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~-------~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~  406 (523)
                      .++.+|||+|||+|.++..++..+ .+|+++|+++       .+++.+++|++.|+..   .++.+...|..+.     +
T Consensus        82 ~~~~~VLDlgcG~G~~a~~lA~~g-~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~---~ri~~~~~d~~~~-----l  152 (258)
T 2r6z_A           82 TAHPTVWDATAGLGRDSFVLASLG-LTVTAFEQHPAVACLLSDGIRRALLNPETQDTA---ARINLHFGNAAEQ-----M  152 (258)
T ss_dssp             GGCCCEEETTCTTCHHHHHHHHTT-CCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHH---TTEEEEESCHHHH-----H
T ss_pred             CCcCeEEEeeCccCHHHHHHHHhC-CEEEEEECChhhhHHHHHHHHHHHhHHHhhCCc---cCeEEEECCHHHH-----H
Confidence            467899999999999988888875 4799999999       9999999999888764   3466665443221     1


Q ss_pred             hhhcC--CCccEEEEcccc
Q 009871          407 KEENN--EGFEVILGTDVS  423 (523)
Q Consensus       407 ~~~~~--~~fD~Ii~~d~~  423 (523)
                      ..+.+  .+||+|+...+.
T Consensus       153 ~~~~~~~~~fD~V~~dP~~  171 (258)
T 2r6z_A          153 PALVKTQGKPDIVYLDPMY  171 (258)
T ss_dssp             HHHHHHHCCCSEEEECCCC
T ss_pred             HhhhccCCCccEEEECCCC
Confidence            12222  589999985443

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=98.59  E-value=1.3e-07  Score=89.78  Aligned_cols=113  Identities=12%  Similarity=0.085  Sum_probs=77.4

Q ss_pred             CeEEEECCCc--cHHHHHHHhc--CCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCC
Q 009871          337 KKVLELGCGC--GGICSMVAAG--SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNE  412 (523)
Q Consensus       337 ~~VLElG~G~--G~l~~~~a~~--~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~  412 (523)
                      .+|||||||+  ++....+++.  ...+|+++|.|+.||+.++.++..+.    ..++.+...|..+...+-. .+....
T Consensus        80 ~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~----~~~~~~v~aD~~~~~~~l~-~~~~~~  154 (277)
T 3giw_A           80 RQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTP----EGRTAYVEADMLDPASILD-APELRD  154 (277)
T ss_dssp             CEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCS----SSEEEEEECCTTCHHHHHT-CHHHHT
T ss_pred             CEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCC----CCcEEEEEecccChhhhhc-cccccc
Confidence            6899999997  3344444443  34689999999999999998876432    2467777777655321000 000012


Q ss_pred             Ccc-----EEEEccccCCCCC---hHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecC
Q 009871          413 GFE-----VILGTDVSYIPEA---ILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ  463 (523)
Q Consensus       413 ~fD-----~Ii~~d~~y~~~~---~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~  463 (523)
                      .||     .|+++-++++...   ...+++.+.+.|         +|||.+++++....
T Consensus       155 ~~D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L---------~PGG~Lvls~~~~d  204 (277)
T 3giw_A          155 TLDLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPL---------PSGSYLAMSIGTAE  204 (277)
T ss_dssp             TCCTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTS---------CTTCEEEEEEECCT
T ss_pred             ccCcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhC---------CCCcEEEEEeccCC
Confidence            344     5778888888665   467999999999         78999999987754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	523
d2g72a1	263	c.66.1.15 (A:18-280) Phenylethanolamine N-methyltr	2e-17
d2a14a1	257	c.66.1.15 (A:5-261) Indolethylamine N-methyltransf	1e-11
d1xvaa_	292	c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Ra	4e-07
d1xtpa_	254	c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa	4e-05
d1wzna1	251	c.66.1.43 (A:1-251) Hypothetical methyltransferase	4e-05
d2fyta1	311	c.66.1.6 (A:238-548) Protein arginine N-methyltran	9e-05
d1yzha1	204	c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltra	2e-04
d2fcaa1	204	c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltr	2e-04
d1nw3a_	328	c.66.1.31 (A:) Catalytic, N-terminal domain of his	4e-04
d1g6q1_	328	c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Ba	5e-04
d1oria_	316	c.66.1.6 (A:) Protein arginine N-methyltransferase	5e-04
d2ex4a1	222	c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (	6e-04
d2oyra1	250	c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shi	8e-04
d1g8sa_	230	c.66.1.3 (A:) Fibrillarin homologue {Archaeon Meth	0.001
d1vl5a_	231	c.66.1.41 (A:) Hypothetical protein BH2331 {Bacill	0.003

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.9 bits (196), Expect = 2e-17
 Identities = 17/125 (13%), Positives = 34/125 (27%), Gaps = 10/125 (8%)

Query: 34  RDKYER-EAKKYWDLFYKRHQDRFFKDRHYLD---KEWGRYFSGAGRKDVLEVGCGAGNT 89
              Y+R E + Y    Y   +              +   + F+         +  G+G T
Sbjct: 7   ASAYQRFEPRAYLRNNYAPPRGDLCNPNGVGPWKLRCLAQTFATGEVSGRTLIDIGSGPT 66

Query: 90  IFPLIAAYPDV-FVYACDFSPRAVNLVM-----THKDFTETRVSTFVCDLISDDLSRQIS 143
           ++ L++A      +   DF       +          F  +  S   C +       Q  
Sbjct: 67  VYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDK 126

Query: 144 PSSID 148
              + 
Sbjct: 127 ERQLR 131

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} Length = 257

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.8 bits (151), Expect = 1e-11
 Identities = 28/228 (12%), Positives = 55/228 (24%), Gaps = 64/228 (28%)

Query: 34  RDKYERE--AKKYWDLFYKRHQDRFFKD--RHYLDKEWGRYFSGAGRKDVLEVGCGAGNT 89
            D+Y++    + Y   +Y        +     +  +   + F   G +    +  G+G T
Sbjct: 4   GDEYQKHFLPRDYLATYYSFDGSPSPEAEMLKFNLECLHKTFGPGGLQGDTLIDIGSGPT 63

Query: 90  IFPLIAAYP-DVFVYACDFSPRAVNLVMTH-----KDFTETRVSTFVC------------ 131
           I+ ++AA      +   DF+ R    +          +  T    F C            
Sbjct: 64  IYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEK 123

Query: 132 --------------DLISDDLSRQISPSSIDIVTM------------------------- 152
                         D+   +          D V                           
Sbjct: 124 EEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLL 183

Query: 153 ---ERLTGKDQKISENFYVRGDGTRAFYFSNDFLTSLFKENGFDVEEL 197
                L         ++ V              +     + GFD+E+L
Sbjct: 184 KPGGHLVTTVTLRLPSYMVGKREFSCVALEKGEVEQAVLDAGFDIEQL 231

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 292

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 49.6 bits (117), Expect = 4e-07
 Identities = 21/94 (22%), Positives = 36/94 (38%), Gaps = 6/94 (6%)

Query: 21  IYPTPNTGVSPF-WRDKY-EREAKKYWDLFYKRHQDRFFKDRHYLDKEWGRYFSGAGRKD 78
           +Y T + GV+     D+Y + EA + W L+    + R  + + +L     ++    G   
Sbjct: 4   VYRTRSLGVAAEGIPDQYADGEAARVWQLYIGDTRSRTAEYKAWLLGLLRQH----GCHR 59

Query: 79  VLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAV 112
           VL+V CG G     L+     V            
Sbjct: 60  VLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKY 93

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} Length = 254

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

 Score = 43.0 bits (100), Expect = 4e-05
 Identities = 23/191 (12%), Positives = 46/191 (24%), Gaps = 30/191 (15%)

Query: 34  RDKYEREAKKYWDLFYKRHQDRFFKDRHYL---DKEWGRYF----SGAGRKDVLEVGCGA 86
              +  +A +YW                ++   D E  R F     G G    L+ G G 
Sbjct: 46  EKGWYGKALEYWRTVPA-TVSGVLGGMDHVHDVDIEGSRNFIASLPGHGTSRALDCGAGI 104

Query: 87  GNTIFPLIAAYPDVFVYACDFSPRAVNLVMTH---------------------KDFTETR 125
           G     L+           +     +                             +    
Sbjct: 105 GRITKNLLTKLYAT-TDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYDLIV 163

Query: 126 VSTFVCDLISDDLSRQISPSSIDIVTMERLTGKDQKISENFYVRGDGTRAFYFSNDFLTS 185
           +      L   D  +        +     +  K+   + + ++      +   S+     
Sbjct: 164 IQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKR 223

Query: 186 LFKENGFDVEE 196
           LF E+G  V +
Sbjct: 224 LFNESGVRVVK 234

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 251

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 42.8 bits (99), Expect = 4e-05
 Identities = 15/73 (20%), Positives = 30/73 (41%), Gaps = 2/73 (2%)

Query: 35  DKYEREAKKYWDLFYKRHQDRFFKDRHYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLI 94
           + Y   A+ Y+D  Y+R  +R   +  ++++ +        R+ VL++ CG G     L 
Sbjct: 3   ELYTLLAE-YYDTIYRRRIERVKAEIDFVEEIFKEDAKREVRR-VLDLACGTGIPTLELA 60

Query: 95  AAYPDVFVYACDF 107
               +V       
Sbjct: 61  ERGYEVVGLDLHE 73

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (98), Expect = 9e-05
 Identities = 16/60 (26%), Positives = 24/60 (40%)

Query: 327 LARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPF 386
           + +NP I   K VL++GCG G +    A   A  V+  D   I    +       L+   
Sbjct: 27  IYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIRLNKLEDTI 86

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} Length = 204

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

 Score = 40.6 bits (94), Expect = 2e-04
 Identities = 15/86 (17%), Positives = 26/86 (30%), Gaps = 2/86 (2%)

Query: 67  WGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRV 126
           W   F G      +EVG G G  +  +    PD+     D     ++  +          
Sbjct: 24  WRDLF-GNDNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPN 82

Query: 127 STFVCDLISDDLSRQISPSSIDIVTM 152
              +      DL+       ID + +
Sbjct: 83  IKLLWV-DGSDLTDYFEDGEIDRLYL 107

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} Length = 204

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

 Score = 40.6 bits (94), Expect = 2e-04
 Identities = 14/73 (19%), Positives = 23/73 (31%), Gaps = 1/73 (1%)

Query: 46  DLFYKRHQDRFFKDRHYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYAC 105
           D F   + D    +      +W   F G      +EVG G G  I  +    PD+     
Sbjct: 1   DDFLAENADIAISNPADYKGKWNTVF-GNDNPIHIEVGTGKGQFISGMAKQNPDINYIGI 59

Query: 106 DFSPRAVNLVMTH 118
           +     +   +  
Sbjct: 60  ELFKSVIVTAVQK 72

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} Length = 328

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (93), Expect = 4e-04
 Identities = 20/131 (15%), Positives = 41/131 (31%), Gaps = 12/131 (9%)

Query: 79  VLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFV-----CDL 133
            +++G G G  +  + AA      Y  + +        T        +  +        L
Sbjct: 155 FVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTL 214

Query: 134 ISDDLSRQISPSSI---DIVTMERL---TGKDQKISENFYVRGDGTRAFYFSNDFLTSLF 187
              D   +     I    ++ +         D ++ E F    +G R    S  F    F
Sbjct: 215 ERGDFLSEEWRERIANTSVIFVNNFAFGPEVDHQLKERFANMKEGGR-IVSSKPFAPLNF 273

Query: 188 KENGFDVEELG 198
           + N  ++ ++G
Sbjct: 274 RINSRNLSDIG 284

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 328

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.8 bits (92), Expect = 5e-04
 Identities = 14/60 (23%), Positives = 21/60 (35%)

Query: 327 LARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPF 386
           + +N  +   K VL++GCG G +    A   A  V+  D  SI                 
Sbjct: 30  IIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSSIIEMAKELVELNGFSDKI 89

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 316

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.8 bits (92), Expect = 5e-04
 Identities = 11/39 (28%), Positives = 18/39 (46%)

Query: 327 LARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATD 365
           +  N  +   K VL++G G G +C   A   A  V+  +
Sbjct: 25  MFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIE 63

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} Length = 222

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (89), Expect = 6e-04
 Identities = 28/195 (14%), Positives = 48/195 (24%), Gaps = 34/195 (17%)

Query: 35  DKYEREAKKYWD-----------LFYKRHQDRFFKDRHYLDKEWGRYFSGAGRKDVLEVG 83
            ++  +AK YW             +           R +L +      +  G    L+ G
Sbjct: 9   KQFYSKAKTYWKQIPPTVDGMLGGYGHISSIDINSSRKFLQRFLREGPNKTGTSCALDCG 68

Query: 84  CGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQIS 143
            G G     L+       V   D +   +    T+      RV  + C  + D      S
Sbjct: 69  AGIGRITKRLLLPLFRE-VDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDS 127

Query: 144 PSSIDIVTMERLTGKDQK------------------ISENFYVRG----DGTRAFYFSND 181
              I I  +                           I +N    G    D   +     D
Sbjct: 128 YDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLD 187

Query: 182 FLTSLFKENGFDVEE 196
            +  +    G  +  
Sbjct: 188 VVRRIICSAGLSLLA 202

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} Length = 250

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

 Score = 38.8 bits (90), Expect = 8e-04
 Identities = 27/185 (14%), Positives = 59/185 (31%), Gaps = 31/185 (16%)

Query: 336 GKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRL 395
              V++   G G   + V A     V   + + +   LL   +        +   + +RL
Sbjct: 89  LPDVVDATAGLGRD-AFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERL 147

Query: 396 EWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAF 455
           +  +   + A+ +             V Y+     P+F   +       KS    ++   
Sbjct: 148 QLIHASSLTALTDITPR-------PQVVYLD----PMFPHKQ-------KSALVKKEMRV 189

Query: 456 ILCHIFRQVDEPSMLSAATQCGF-RLVDKWPSK----NSASPSESII--SSWFSENGHEV 508
               +   +D   +L  A      R+V K P       + +   +++     F     ++
Sbjct: 190 FQSLVGPDLDADGLLEPARLLATKRVVVKRPDYAPPLANVATPNAVVTKGHRF-----DI 244

Query: 509 YLPSP 513
           Y  +P
Sbjct: 245 YAGTP 249

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 38.2 bits (88), Expect = 0.001
 Identities = 19/132 (14%), Positives = 41/132 (31%), Gaps = 14/132 (10%)

Query: 79  VLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAV-------------NLVMTHKDFTETR 125
           +L +G  AG T   +        VYA +++PR +               ++   +  +  
Sbjct: 78  ILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEY 137

Query: 126 VSTFVCDLISDDLSRQISPSSIDIVTMERLTGKDQKISENFYVRG-DGTRAFYFSNDFLT 184
            +      +  +   Q + + I I   +    K          R  D T+          
Sbjct: 138 ANIVEKVDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQK 197

Query: 185 SLFKENGFDVEE 196
            + +  GF + +
Sbjct: 198 EILEAGGFKIVD 209

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Length = 231

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

 Score = 37.3 bits (85), Expect = 0.003
 Identities = 19/151 (12%), Positives = 37/151 (24%), Gaps = 32/151 (21%)

Query: 77  KDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISD 136
           ++VL+V  G G+             V A D +   + +     +    +   +V      
Sbjct: 17  EEVLDVATGGGHVANAFAPFVKK--VVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQ 74

Query: 137 DLSRQISPSSIDIVTMERLTGKDQK----------------ISENFYVRGDGTRAFY--- 177
                     +                              + +N     D    FY   
Sbjct: 75  MPFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSAPENDAFDVFYNYV 134

Query: 178 -----------FSNDFLTSLFKENGFDVEEL 197
                      +       + +E GF++EEL
Sbjct: 135 EKERDYSHHRAWKKSDWLKMLEEAGFELEEL 165

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	523
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.69
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	99.68
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	99.68
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.66
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.66
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.65
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.65
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.64
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	99.63
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	99.61
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	99.61
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.61
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	99.58
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	99.58
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.58
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	99.57
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	99.56
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	99.55
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	99.55
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.55
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	99.54
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.53
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.51
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	99.5
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	99.48
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.47
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	99.47
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	99.47
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	99.46
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.46
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	99.46
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	99.44
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.44
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.44
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	99.43
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	99.43
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	99.43
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	99.43
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	99.42
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	99.42
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	99.41
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	99.39
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	99.39
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	99.39
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	99.38
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	99.38
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	99.38
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	99.37
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	99.37
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	99.36
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	99.36
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	99.36
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	99.35
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	99.35
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	99.34
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	99.33
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	99.32
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	99.32
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	99.31
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	99.31
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	99.31
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	99.31
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	99.31
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	99.3
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	99.3
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	99.3
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	99.29
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	99.28
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	99.27
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	99.27
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	99.27
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	99.27
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	99.26
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	99.26
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	99.26
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	99.26
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	99.26
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	99.25
d2h00a1	250	Methyltransferase 10 domain containing protein MET	99.25
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	99.23
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	99.22
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	99.2
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	99.2
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	99.19
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	99.18
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	99.17
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	99.16
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	99.16
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	99.16
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.16
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	99.16
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	99.15
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	99.15
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	99.15
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	99.14
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	99.12
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	99.11
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	99.08
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	99.05
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	99.04
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	99.03
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	99.02
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	99.01
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	99.01
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	99.01
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	99.0
d2h00a1	250	Methyltransferase 10 domain containing protein MET	98.99
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	98.98
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	98.96
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	98.94
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	98.92
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	98.89
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	98.88
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	98.86
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	98.85
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	98.85
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	98.83
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	98.8
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	98.78
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	98.75
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	98.74
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	98.73
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	98.7
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	98.68
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	98.66
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	98.66
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	98.62
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	98.59
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	98.58
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	98.58
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	98.58
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	98.49
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	98.48
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	98.48
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	98.48
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	98.42
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	98.42
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	98.4
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	98.4
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	98.37
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	98.36
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	98.35
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	98.3
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	98.28
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	98.27
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	98.2
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	98.11
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	98.11
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	98.08
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.07
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	98.06
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	98.03
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	98.02
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	98.02
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	98.01
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	97.98
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	97.97
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	97.97
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	97.95
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	97.95
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	97.92
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	97.86
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	97.84
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	97.83
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	97.82
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	97.82
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	97.82
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	97.8
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	97.79
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	97.77
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	97.72
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	97.72
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	97.7
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	97.7
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	97.69
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	97.67
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	97.63
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	97.62
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	97.59
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	97.57
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	97.57
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	97.55
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	97.54
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	97.48
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	97.46
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	97.32
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	97.2
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	97.18
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	97.08
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	97.02
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	96.95
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	96.89
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	96.84
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	96.75
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	96.69
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	96.63
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	96.5
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	96.34
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	96.27
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	96.0
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	95.99
d2c7pa1	327	DNA methylase HhaI {Haemophilus haemolyticus [TaxI	95.96
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	95.82
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	95.72
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	95.59
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	95.46
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	95.31
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	95.24
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	95.15
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	94.97
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	94.94
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	94.68
d1o9ga_	249	rRNA methyltransferase AviRa {Streptomyces viridoc	94.6
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	94.56
d1dcta_	324	DNA methylase HaeIII {Haemophilus aegyptius [TaxId	94.55
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	94.5
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	94.41
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	94.02
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	93.7
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	93.53
d1g55a_	343	DNMT2 {Human (Homo sapiens) [TaxId: 9606]}	93.3
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	93.11
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	92.87
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	92.35
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	92.33
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	92.32
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	92.23
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	92.17
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	92.08
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	91.99
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	91.78
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	91.59
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	90.91
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	90.89
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	90.76
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	90.7
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	90.43
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	90.17
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	89.62
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	89.23
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	89.08
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	88.68
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	88.68
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	88.61
d2py6a1	395	Methyltransferase FkbM {Methylobacillus flagellatu	88.31
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	88.02
d1g55a_	343	DNMT2 {Human (Homo sapiens) [TaxId: 9606]}	87.81
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	87.42
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	87.39
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	87.11
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	86.45
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	86.26
d1dcta_	324	DNA methylase HaeIII {Haemophilus aegyptius [TaxId	86.23
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	86.19
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	86.16
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	85.99
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	85.93
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	85.35
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	85.26
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	85.17
d1zkda1	365	Hypothetical protein RPA4359 {Rhodopseudomonas pal	84.47
d2py6a1	395	Methyltransferase FkbM {Methylobacillus flagellatu	84.05
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	83.73
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	83.53
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	83.34
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	82.47
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	82.37
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	81.31
d2c7pa1	327	DNA methylase HhaI {Haemophilus haemolyticus [TaxI	81.18
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	81.1
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	80.43

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.69  E-value=2.9e-16  Score=142.00  Aligned_cols=169  Identities=15%  Similarity=0.196  Sum_probs=120.3

Q ss_pred             cCCCCC--CCceEEEEEEcCceEEEEEecccccccCCCcccccchhHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHH
Q 009871          276 FGLSSF--EDNEMIEVNLRDRSFKIEVLSKEYQHTCRSTGLMLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMV  353 (523)
Q Consensus       276 f~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~G~~~W~~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~  353 (523)
                      |++.|.  ......+..+.|.++++.+.++++....      ++.++.+|++.+    ...++++|||+|||+|.++..+
T Consensus         1 ~~~~p~~~~~~~~~~~~~~g~~~~~~t~~gvF~~~~------~d~~t~lLi~~l----~~~~~~~VLDiGcG~G~~~~~l   70 (194)
T d1dusa_           1 FSEKPTTKSDVKIVEDILRGKKLKFKTDSGVFSYGK------VDKGTKILVENV----VVDKDDDILDLGCGYGVIGIAL   70 (194)
T ss_dssp             CCCCCCSCCCEEEEEEEETTEEEEEEEETTSTTTTS------CCHHHHHHHHHC----CCCTTCEEEEETCTTSHHHHHH
T ss_pred             CCCCCCCccceEEEEEEECCeeEEEEcCCCccCCCC------cCHHHHHHHHhC----CcCCCCeEEEEeecCChhHHHH
Confidence            344444  3456777788999999988777764322      344555565554    3457889999999999888777


Q ss_pred             HhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCccEEEEccccCCCCC-hHHH
Q 009871          354 AAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPEA-ILPL  432 (523)
Q Consensus       354 a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~-~~~l  432 (523)
                      +.. +.+|+++|+|+.+++.+++|+..|++..  ..+.+...|+.+.        +.+.+||+|+++.++|.... ...+
T Consensus        71 a~~-~~~v~~iD~s~~~i~~a~~n~~~~~l~~--~~i~~~~~d~~~~--------~~~~~fD~Ii~~~p~~~~~~~~~~~  139 (194)
T d1dusa_          71 ADE-VKSTTMADINRRAIKLAKENIKLNNLDN--YDIRVVHSDLYEN--------VKDRKYNKIITNPPIRAGKEVLHRI  139 (194)
T ss_dssp             GGG-SSEEEEEESCHHHHHHHHHHHHHTTCTT--SCEEEEECSTTTT--------CTTSCEEEEEECCCSTTCHHHHHHH
T ss_pred             Hhh-ccccceeeeccccchhHHHHHHHhCCcc--ceEEEEEcchhhh--------hccCCceEEEEcccEEecchhhhhH
Confidence            765 4689999999999999999999998753  3466655555432        23568999999988776554 5788


Q ss_pred             HHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhHHHHHHHH
Q 009871          433 FATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQ  475 (523)
Q Consensus       433 ~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~~~~~~~  475 (523)
                      ++.+.++|         +|+|.+++...... ....+...+++
T Consensus       140 l~~~~~~L---------kpgG~l~i~~~~~~-~~~~~~~~l~~  172 (194)
T d1dusa_         140 IEEGKELL---------KDNGEIWVVIQTKQ-GAKSLAKYMKD  172 (194)
T ss_dssp             HHHHHHHE---------EEEEEEEEEEESTH-HHHHHHHHHHH
T ss_pred             HHHHHHhc---------CcCcEEEEEEeCcC-CHHHHHHHHHH
Confidence            99999999         67999887654422 22344444444

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=9e-17  Score=148.79  Aligned_cols=123  Identities=15%  Similarity=0.129  Sum_probs=88.1

Q ss_pred             cCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC-CCcEEEEEeeccCCccCCCCCCCceeEE
Q 009871           72 SGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT-ETRVSTFVCDLISDDLSRQISPSSIDIV  150 (523)
Q Consensus        72 ~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~-~~~v~~~~~d~~~~~~~~~~~~~~fD~V  150 (523)
                      ...++.+|||||||+|..+..++..++ .+|+|||+|+.||+.|+++.... ..+++|+++|++++    ++++++||+|
T Consensus        57 ~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~----~~~~~~fD~I  131 (222)
T d2ex4a1          57 NKTGTSCALDCGAGIGRITKRLLLPLF-REVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDF----TPEPDSYDVI  131 (222)
T ss_dssp             -CCCCSEEEEETCTTTHHHHHTTTTTC-SEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGC----CCCSSCEEEE
T ss_pred             CCCCCCEEEEeccCCCHhhHHHHHhcC-CEEEEeecCHHHhhcccccccccccccccccccccccc----cccccccccc
Confidence            445678999999999999998876653 47999999999999999976433 35789999999987    5678999999


Q ss_pred             EE-------------------ccccccceeeecceEEecCCeE------EEeeCHHHHHHHHHhCCCcEEEEEe
Q 009871          151 TM-------------------ERLTGKDQKISENFYVRGDGTR------AFYFSNDFLTSLFKENGFDVEELGL  199 (523)
Q Consensus       151 ~~-------------------~~~~~~~~~~~~~~~~~~~g~~------~~~~~~~~l~~ll~~~Gf~~~~~~~  199 (523)
                      ++                   .+.+++++.+.-......++..      .+.++.+++.++|+++||++++...
T Consensus       132 ~~~~~l~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aGf~ii~~~~  205 (222)
T d2ex4a1         132 WIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAEER  205 (222)
T ss_dssp             EEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEEEE
T ss_pred             ccccccccchhhhhhhHHHHHHHhcCCcceEEEEEcccccccccccCCceeeCCHHHHHHHHHHcCCEEEEEEE
Confidence            99                   1222222222111011111111      1235899999999999999877643

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=99.68  E-value=1e-16  Score=150.18  Aligned_cols=146  Identities=21%  Similarity=0.191  Sum_probs=112.1

Q ss_pred             CcccccchhHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCce
Q 009871          311 STGLMLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKL  390 (523)
Q Consensus       311 ~~G~~~W~~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v  390 (523)
                      ..|.-..+++.++.++|....  .+|++|||+|||+|.++..+++.+ .+|+++|+|+.|++.|++|++.|++.     +
T Consensus        98 aFGTG~H~TT~l~l~~l~~~~--~~g~~VLDiGcGsG~l~i~aa~~g-~~V~gvDis~~av~~A~~na~~n~~~-----~  169 (254)
T d2nxca1          98 AFGTGHHETTRLALKALARHL--RPGDKVLDLGTGSGVLAIAAEKLG-GKALGVDIDPMVLPQAEANAKRNGVR-----P  169 (254)
T ss_dssp             ----CCSHHHHHHHHHHHHHC--CTTCEEEEETCTTSHHHHHHHHTT-CEEEEEESCGGGHHHHHHHHHHTTCC-----C
T ss_pred             ccCccccchhhHHHHHHHhhc--CccCEEEEcccchhHHHHHHHhcC-CEEEEEECChHHHHHHHHHHHHcCCc-----e
Confidence            455567788999999998755  488999999999998887777666 57999999999999999999999874     2


Q ss_pred             EEEeeecCCCCcchhhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhHHH
Q 009871          391 ITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSML  470 (523)
Q Consensus       391 ~~~~ldw~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~~  470 (523)
                      .+...++.+        .++.++||+|+++   .....+..+++.+.++|         +|||.++++.... ...+.+.
T Consensus       170 ~~~~~d~~~--------~~~~~~fD~V~an---i~~~~l~~l~~~~~~~L---------kpGG~lilSgil~-~~~~~v~  228 (254)
T d2nxca1         170 RFLEGSLEA--------ALPFGPFDLLVAN---LYAELHAALAPRYREAL---------VPGGRALLTGILK-DRAPLVR  228 (254)
T ss_dssp             EEEESCHHH--------HGGGCCEEEEEEE---CCHHHHHHHHHHHHHHE---------EEEEEEEEEEEEG-GGHHHHH
T ss_pred             eEEeccccc--------cccccccchhhhc---cccccHHHHHHHHHHhc---------CCCcEEEEEecch-hhHHHHH
Confidence            333333211        2345799999997   44456788899999999         6799999987653 3456788


Q ss_pred             HHHHHcCCEEEEEcC
Q 009871          471 SAATQCGFRLVDKWP  485 (523)
Q Consensus       471 ~~~~~~gf~~~~~~~  485 (523)
                      +.++++||++.+...
T Consensus       229 ~~~~~~Gf~~~~~~~  243 (254)
T d2nxca1         229 EAMAGAGFRPLEEAA  243 (254)
T ss_dssp             HHHHHTTCEEEEEEE
T ss_pred             HHHHHCCCEEEEEEE
Confidence            899999999987754

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.66  E-value=4.3e-16  Score=145.31  Aligned_cols=138  Identities=9%  Similarity=0.101  Sum_probs=108.3

Q ss_pred             HHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcch
Q 009871          325 AVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIE  404 (523)
Q Consensus       325 ~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~  404 (523)
                      ++|.+..++.+|.+|||||||+|.++..+++.+ .+|+++|+|+.|++.|++++..++..    ++.+...|..+.    
T Consensus         6 ~~l~~~~~~~~~~rILDiGcGtG~~~~~la~~~-~~v~gvD~S~~~l~~A~~~~~~~~~~----~~~~~~~d~~~~----   76 (234)
T d1xxla_           6 GLMIKTAECRAEHRVLDIGAGAGHTALAFSPYV-QECIGVDATKEMVEVASSFAQEKGVE----NVRFQQGTAESL----   76 (234)
T ss_dssp             HHHHHHHTCCTTCEEEEESCTTSHHHHHHGGGS-SEEEEEESCHHHHHHHHHHHHHHTCC----SEEEEECBTTBC----
T ss_pred             HHHHHHhCCCCCCEEEEeCCcCcHHHHHHHHhC-CeEEEEeCChhhhhhhhhhhcccccc----cccccccccccc----
Confidence            344444466789999999999999988888876 58999999999999999999987763    466666555432    


Q ss_pred             hhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCC--------------------
Q 009871          405 AIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQV--------------------  464 (523)
Q Consensus       405 ~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~--------------------  464 (523)
                         ++++++||+|+++.++++..+...+++.+.++|         +|||.++++......                    
T Consensus        77 ---~~~~~~fD~v~~~~~l~~~~d~~~~l~~~~r~L---------kpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (234)
T d1xxla_          77 ---PFPDDSFDIITCRYAAHHFSDVRKAVREVARVL---------KQDGRFLLVDHYAPEDPVLDEFVNHLNRLRDPSHV  144 (234)
T ss_dssp             ---CSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHE---------EEEEEEEEEEECBCSSHHHHHHHHHHHHHHCTTCC
T ss_pred             ---cccccccceeeeeceeecccCHHHHHHHHHHee---------CCCcEEEEEEcCCCCCHHHHHHHHHHHhhCCCccc
Confidence               345689999999999999999999999999999         679999887543221                    


Q ss_pred             ---ChhHHHHHHHHcCCEEEEE
Q 009871          465 ---DEPSMLSAATQCGFRLVDK  483 (523)
Q Consensus       465 ---~~~~~~~~~~~~gf~~~~~  483 (523)
                         +...+...+++.||.+..+
T Consensus       145 ~~~~~~~~~~~~~~~gf~~~~~  166 (234)
T d1xxla_         145 RESSLSEWQAMFSANQLAYQDI  166 (234)
T ss_dssp             CCCBHHHHHHHHHHTTEEEEEE
T ss_pred             ccCCHHHHHHHHHHCCCceeEE
Confidence               1233556678899987665

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.66  E-value=4.8e-16  Score=144.58  Aligned_cols=131  Identities=15%  Similarity=0.121  Sum_probs=105.7

Q ss_pred             CCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcC
Q 009871          332 TIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENN  411 (523)
Q Consensus       332 ~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~  411 (523)
                      .+.++.+|||||||+|.++..++..+ .+|+++|+|+.|++.|++++..++.    .++.+...++.+.       ++++
T Consensus        12 ~l~~~~rVLDiGcG~G~~~~~l~~~~-~~v~gvD~s~~~i~~A~~~~~~~~~----~~i~~~~~d~~~l-------~~~~   79 (231)
T d1vl5a_          12 ALKGNEEVLDVATGGGHVANAFAPFV-KKVVAFDLTEDILKVARAFIEGNGH----QQVEYVQGDAEQM-------PFTD   79 (231)
T ss_dssp             TCCSCCEEEEETCTTCHHHHHHGGGS-SEEEEEESCHHHHHHHHHHHHHTTC----CSEEEEECCC-CC-------CSCT
T ss_pred             CCCCcCEEEEecccCcHHHHHHHHhC-CEEEEEECCHHHHhhhhhccccccc----ccccccccccccc-------cccc
Confidence            45678899999999998888888776 5899999999999999999988765    4677777776553       3456


Q ss_pred             CCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecC-----------------------CChhH
Q 009871          412 EGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ-----------------------VDEPS  468 (523)
Q Consensus       412 ~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~-----------------------~~~~~  468 (523)
                      ++||+|++..++++..+...+++.+.++|         +|||.+++......                       ....+
T Consensus        80 ~~fD~v~~~~~l~~~~d~~~~l~~~~r~L---------kpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (231)
T d1vl5a_          80 ERFHIVTCRIAAHHFPNPASFVSEAYRVL---------KKGGQLLLVDNSAPENDAFDVFYNYVEKERDYSHHRAWKKSD  150 (231)
T ss_dssp             TCEEEEEEESCGGGCSCHHHHHHHHHHHE---------EEEEEEEEEEEEBCSSHHHHHHHHHHHHHHCTTCCCCCBHHH
T ss_pred             cccccccccccccccCCHHHHHHHHHHhc---------CCCcEEEEEeCCCCCCHHHHHHHHHHHhhcccCcccCCCHHH
Confidence            79999999999999999999999999999         67999988654321                       12245


Q ss_pred             HHHHHHHcCCEEEEE
Q 009871          469 MLSAATQCGFRLVDK  483 (523)
Q Consensus       469 ~~~~~~~~gf~~~~~  483 (523)
                      +...++++||+++++
T Consensus       151 ~~~~l~~aGf~~~~~  165 (231)
T d1vl5a_         151 WLKMLEEAGFELEEL  165 (231)
T ss_dssp             HHHHHHHHTCEEEEE
T ss_pred             HHHHHHHCCCEEEEE
Confidence            667788899998764

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.65  E-value=2.6e-16  Score=146.37  Aligned_cols=125  Identities=18%  Similarity=0.169  Sum_probs=91.8

Q ss_pred             hhhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhcccc-CCCcEEEEEeeccCCccCCCCCCCce
Q 009871           69 RYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDF-TETRVSTFVCDLISDDLSRQISPSSI  147 (523)
Q Consensus        69 ~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~-~~~~v~~~~~d~~~~~~~~~~~~~~f  147 (523)
                      +..+..++.+|||||||+|..+..+++++  .+|+|+|+|+.|++.|+++... ...++++.++|++++    |+++++|
T Consensus         9 ~~~~l~~~~rVLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l----~~~~~~f   82 (231)
T d1vl5a_           9 QIAALKGNEEVLDVATGGGHVANAFAPFV--KKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQM----PFTDERF   82 (231)
T ss_dssp             HHHTCCSCCEEEEETCTTCHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CC----CSCTTCE
T ss_pred             HhcCCCCcCEEEEecccCcHHHHHHHHhC--CEEEEEECCHHHHhhhhhcccccccccccccccccccc----ccccccc
Confidence            44566788999999999999999999884  5799999999999999987643 347899999999988    7788999


Q ss_pred             eEEEE-----------------ccccccceeeecceEEecC----------------CeEEEeeCHHHHHHHHHhCCCcE
Q 009871          148 DIVTM-----------------ERLTGKDQKISENFYVRGD----------------GTRAFYFSNDFLTSLFKENGFDV  194 (523)
Q Consensus       148 D~V~~-----------------~~~~~~~~~~~~~~~~~~~----------------g~~~~~~~~~~l~~ll~~~Gf~~  194 (523)
                      |+|+|                 .+++++++.+.-.....++                .....+++.+++.++|+++||++
T Consensus        83 D~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~  162 (231)
T d1vl5a_          83 HIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSAPENDAFDVFYNYVEKERDYSHHRAWKKSDWLKMLEEAGFEL  162 (231)
T ss_dssp             EEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHHTCEE
T ss_pred             ccccccccccccCCHHHHHHHHHHhcCCCcEEEEEeCCCCCCHHHHHHHHHHHhhcccCcccCCCHHHHHHHHHHCCCEE
Confidence            99999                 3333444433211111111                01112357889999999999998


Q ss_pred             EEEEe
Q 009871          195 EELGL  199 (523)
Q Consensus       195 ~~~~~  199 (523)
                      +++..
T Consensus       163 ~~~~~  167 (231)
T d1vl5a_         163 EELHC  167 (231)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            76643

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.65  E-value=3.6e-16  Score=146.91  Aligned_cols=150  Identities=13%  Similarity=0.108  Sum_probs=121.3

Q ss_pred             cchhHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEee
Q 009871          316 LWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRL  395 (523)
Q Consensus       316 ~W~~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l  395 (523)
                      .+|.+.-..+.|.....+.+|.+|||||||+|.++..+++..+.+|+++|+|+.|++.+++++..+++.   .++.+...
T Consensus        14 ~~p~~~~~~~~l~~~~~l~pg~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~~~~~ar~~~~~~gl~---~~v~~~~~   90 (245)
T d1nkva_          14 HNPFTEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVS---ERVHFIHN   90 (245)
T ss_dssp             SSSCCHHHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCT---TTEEEEES
T ss_pred             cCCCCHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHhcCCEEEEEecccchhhHHHHHHHHhhcc---ccchhhhh
Confidence            355555566667777777899999999999998888888776678999999999999999999998876   57888877


Q ss_pred             ecCCCCcchhhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecC------------
Q 009871          396 EWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ------------  463 (523)
Q Consensus       396 dw~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~------------  463 (523)
                      |+.+.        ..+++||+|++..++++..+...+++.+.++|         +|||.+++......            
T Consensus        91 d~~~~--------~~~~~fD~v~~~~~~~~~~d~~~~l~~~~r~L---------kPGG~l~i~~~~~~~~~~~~~~~~~~  153 (245)
T d1nkva_          91 DAAGY--------VANEKCDVAACVGATWIAGGFAGAEELLAQSL---------KPGGIMLIGEPYWRQLPATEEIAQAC  153 (245)
T ss_dssp             CCTTC--------CCSSCEEEEEEESCGGGTSSSHHHHHHHTTSE---------EEEEEEEEEEEEETTCCSSHHHHHTT
T ss_pred             HHhhc--------cccCceeEEEEEehhhccCCHHHHHHHHHHHc---------CcCcEEEEEeccccCCCChHHHHHHh
Confidence            76543        13578999999999999999999999999999         67999998765311            


Q ss_pred             --------CChhHHHHHHHHcCCEEEEEcC
Q 009871          464 --------VDEPSMLSAATQCGFRLVDKWP  485 (523)
Q Consensus       464 --------~~~~~~~~~~~~~gf~~~~~~~  485 (523)
                              .+...+...+.+.||++.....
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~aG~~~v~~~~  183 (245)
T d1nkva_         154 GVSSTSDFLTLPGLVGAFDDLGYDVVEMVL  183 (245)
T ss_dssp             TCSCGGGSCCHHHHHHHHHTTTBCCCEEEE
T ss_pred             ccCCCcccCCHHHHHHHHHHcCCEEEEEEe
Confidence                    1234577888999999877644

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.64  E-value=1.6e-15  Score=145.55  Aligned_cols=144  Identities=13%  Similarity=0.155  Sum_probs=116.1

Q ss_pred             HHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCc
Q 009871          323 MAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDH  402 (523)
Q Consensus       323 la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~  402 (523)
                      +++.|.....+.++.+|||||||+|.++..+++....+|+++|+|+.+++.++++....++.   .++.+...++.+.  
T Consensus        55 ~~~~l~~~~~l~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~i~~a~~~~~~~gl~---~~v~~~~~d~~~l--  129 (282)
T d2o57a1          55 LASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLA---DNITVKYGSFLEI--  129 (282)
T ss_dssp             HHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCT---TTEEEEECCTTSC--
T ss_pred             HHHHHHHhcCCCCCCEEEEeCCCCcHHHhhhhccCCcEEEEEeccchhhhhhhccccccccc---ccccccccccccc--
Confidence            45556566677789999999999999988888875568999999999999999999888775   5788887777653  


Q ss_pred             chhhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecC-------------------
Q 009871          403 IEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ-------------------  463 (523)
Q Consensus       403 ~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~-------------------  463 (523)
                           ++++++||+|++.+++++..+...+++.+.++|         +|||.++++.....                   
T Consensus       130 -----~~~~~sfD~V~~~~~l~h~~d~~~~l~~~~~~L---------kpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (282)
T d2o57a1         130 -----PCEDNSYDFIWSQDAFLHSPDKLKVFQECARVL---------KPRGVMAITDPMKEDGIDKSSIQPILDRIKLHD  195 (282)
T ss_dssp             -----SSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHE---------EEEEEEEEEEEEECTTCCGGGGHHHHHHHTCSS
T ss_pred             -----cccccccchhhccchhhhccCHHHHHHHHHHhc---------CCCcEEEEEEeecCCCCchhHHHHHHHHhccCC
Confidence                 345679999999999999999999999999999         67999988765421                   


Q ss_pred             -CChhHHHHHHHHcCCEEEEEcC
Q 009871          464 -VDEPSMLSAATQCGFRLVDKWP  485 (523)
Q Consensus       464 -~~~~~~~~~~~~~gf~~~~~~~  485 (523)
                       .+...+.+.++++||+...+..
T Consensus       196 ~~s~~~~~~~l~~~Gf~~i~~~d  218 (282)
T d2o57a1         196 MGSLGLYRSLAKECGLVTLRTFS  218 (282)
T ss_dssp             CCCHHHHHHHHHHTTEEEEEEEE
T ss_pred             CCCHHHHHHHHHHcCCceEEEEE
Confidence             1223456778899998777643

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=1.4e-15  Score=143.85  Aligned_cols=161  Identities=13%  Similarity=0.122  Sum_probs=107.0

Q ss_pred             hhHHHHHHHHhcccccccc--hhhhHHHHhhhhcC--CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHH
Q 009871           41 AKKYWDLFYKRHQDRFFKD--RHYLDKEWGRYFSG--AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVM  116 (523)
Q Consensus        41 ~~~~Wd~~y~~~~~~f~~~--~~~l~~~~~~~~~~--~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~  116 (523)
                      ...||+.||......+...  ++|+.+.+.+.+..  .++.+|||||||+|.++..++... ..+|+|+|+|+.||+.|+
T Consensus        13 ~~~Y~~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~vLDlGcG~G~~~~~~~~~~-~~~v~giD~S~~~i~~a~   91 (257)
T d2a14a1          13 PRDYLATYYSFDGSPSPEAEMLKFNLECLHKTFGPGGLQGDTLIDIGSGPTIYQVLAACDS-FQDITLSDFTDRNREELE   91 (257)
T ss_dssp             HHHHHHHHCCCCCSCCHHHHHHHHHHHHHHHHHSTTSCCEEEEEESSCTTCCGGGTTGGGT-EEEEEEEESCHHHHHHHH
T ss_pred             hHHHHHHHhCcCccccHHHHHHHHHHHHHHHHhcccCCCCCEEEEECCCCCHhHHHHhccc-cCcEEEecCCHHHHHHHH
Confidence            4689999998876665543  56777777766542  457789999999999987777663 346999999999999999


Q ss_pred             hccccCCCc------------------------------E-EEEEeeccCCccCCCCCCCceeEEEE-------------
Q 009871          117 THKDFTETR------------------------------V-STFVCDLISDDLSRQISPSSIDIVTM-------------  152 (523)
Q Consensus       117 ~~~~~~~~~------------------------------v-~~~~~d~~~~~~~~~~~~~~fD~V~~-------------  152 (523)
                      ++.......                              + .....++....+..++++++||+|++             
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~  171 (257)
T d2a14a1          92 KWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDA  171 (257)
T ss_dssp             HHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHH
T ss_pred             HHHhhccccchhhhHHHHHHHhccccchHHHHHHHHhhhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHH
Confidence            875432211                              1 12233333333334678899999999             


Q ss_pred             --------ccccccceeeecc------eEEecCCeE-EEeeCHHHHHHHHHhCCCcEEEEEeEee
Q 009871          153 --------ERLTGKDQKISEN------FYVRGDGTR-AFYFSNDFLTSLFKENGFDVEELGLCCK  202 (523)
Q Consensus       153 --------~~~~~~~~~~~~~------~~~~~~g~~-~~~~~~~~l~~ll~~~Gf~~~~~~~~~~  202 (523)
                              .+++++++.+.-.      .+...+..+ .++++.+++.++|+++||+++++.....
T Consensus       172 ~~~~l~~i~~~LkpGG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v~~~~~~~~  236 (257)
T d2a14a1         172 YRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKREFSCVALEKGEVEQAVLDAGFDIEQLLHSPQ  236 (257)
T ss_dssp             HHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEECCCCCHHHHHHHHHHTTEEEEEEEEECC
T ss_pred             HHHHHHHHHhccCCCcEEEEEEecccccceeccccccccCCCHHHHHHHHHHCCCEEEEEEEecc
Confidence                    2334444443211      112222221 2357999999999999999988765443

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.61  E-value=3.1e-15  Score=140.79  Aligned_cols=103  Identities=17%  Similarity=0.340  Sum_probs=76.0

Q ss_pred             hHHHHHHHHhcccccccchhhhHHHHhhhhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhcccc
Q 009871           42 KKYWDLFYKRHQDRFFKDRHYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDF  121 (523)
Q Consensus        42 ~~~Wd~~y~~~~~~f~~~~~~l~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~  121 (523)
                      .++||..|+.....+.....++...+..... .++++|||||||+|.++..|++.  +.+|+|||+|+.|++.|+++...
T Consensus         9 a~~Yd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~iLDiGcGtG~~~~~l~~~--~~~v~gvD~s~~mi~~a~~~~~~   85 (251)
T d1wzna1           9 AEYYDTIYRRRIERVKAEIDFVEEIFKEDAK-REVRRVLDLACGTGIPTLELAER--GYEVVGLDLHEEMLRVARRKAKE   85 (251)
T ss_dssp             GGGHHHHTHHHHHTHHHHHHHHHHHHHHTCS-SCCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHHHHhcC-CCCCEEEEeCCCCCccchhhccc--ceEEEEEeecccccccccccccc
Confidence            3566665554332222233334333333333 56789999999999999999998  46799999999999999998765


Q ss_pred             CCCcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871          122 TETRVSTFVCDLISDDLSRQISPSSIDIVTM  152 (523)
Q Consensus       122 ~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~  152 (523)
                      .+.++++.++|++++    +++ ++||+|+|
T Consensus        86 ~~~~i~~~~~d~~~l----~~~-~~fD~I~~  111 (251)
T d1wzna1          86 RNLKIEFLQGDVLEI----AFK-NEFDAVTM  111 (251)
T ss_dssp             TTCCCEEEESCGGGC----CCC-SCEEEEEE
T ss_pred             ccccchheehhhhhc----ccc-cccchHhh
Confidence            566899999999987    444 58999998

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=3e-15  Score=141.97  Aligned_cols=170  Identities=12%  Similarity=0.138  Sum_probs=113.5

Q ss_pred             HHHHHH-HhhHHHHHHHHhcccccccchh---hhHHHHhhhhcC--CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeC
Q 009871           34 RDKYER-EAKKYWDLFYKRHQDRFFKDRH---YLDKEWGRYFSG--AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDF  107 (523)
Q Consensus        34 ~~~~~~-~~~~~Wd~~y~~~~~~f~~~~~---~l~~~~~~~~~~--~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~  107 (523)
                      .+.|++ +...||+.||......+.+++.   ++.+++.+.++.  ..+.+|||||||+|.+....+... ..+|+|+|+
T Consensus         7 ~~~~~~f~~~~Y~~~~y~~~~~~~~~~~~~~~~~~~~~~~~f~~g~~~g~~vLDiGcG~g~~~~~~~~~~-~~~v~~~D~   85 (263)
T d2g72a1           7 ASAYQRFEPRAYLRNNYAPPRGDLCNPNGVGPWKLRCLAQTFATGEVSGRTLIDIGSGPTVYQLLSACSH-FEDITMTDF   85 (263)
T ss_dssp             HHHGGGCCHHHHHHHHHSTTTTCCSSTTSHHHHHHHHHHHHHHTSCSCCSEEEEETCTTCCGGGTTGGGG-CSEEEEECS
T ss_pred             HHHHhhcCHHHHHHHHhCcCcccchhhhhhhhhHHHHHHHHcCCCCCCCcEEEEeccCCCHHHHHHhccc-CCeEEEEeC
Confidence            445555 5678999999887777776664   445666666542  467899999999998875555443 236999999


Q ss_pred             CHHHHHHHHhccccCCC-------------------------------cEEEEEeeccCCcc--CCCCCCCceeEEEE--
Q 009871          108 SPRAVNLVMTHKDFTET-------------------------------RVSTFVCDLISDDL--SRQISPSSIDIVTM--  152 (523)
Q Consensus       108 S~~~l~~a~~~~~~~~~-------------------------------~v~~~~~d~~~~~~--~~~~~~~~fD~V~~--  152 (523)
                      |+.|++.|+++......                               ......+|+...+.  +.+.++++||+|++  
T Consensus        86 S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~  165 (263)
T d2g72a1          86 LEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAF  165 (263)
T ss_dssp             CHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEES
T ss_pred             CHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHhhhhhhccccccccCCCccccCCcCcCccCeeeeHH
Confidence            99999999876432211                               12345567765332  22355678999999  


Q ss_pred             -------------------ccccccceeeecc------eEEecCCeE-EEeeCHHHHHHHHHhCCCcEEEEEeEeeee
Q 009871          153 -------------------ERLTGKDQKISEN------FYVRGDGTR-AFYFSNDFLTSLFKENGFDVEELGLCCKQV  204 (523)
Q Consensus       153 -------------------~~~~~~~~~~~~~------~~~~~~g~~-~~~~~~~~l~~ll~~~Gf~~~~~~~~~~~~  204 (523)
                                         .+++++++.+.-.      ++..+.+++ .++++.++++++|+++||+++++.......
T Consensus       166 ~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~~~~~~~~~~~~~~~~~~t~e~v~~~l~~aGf~v~~~~~~~~~~  243 (263)
T d2g72a1         166 CLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEARLTVVPVSEEEVREALVRSGYKVRDLRTYIMPA  243 (263)
T ss_dssp             CHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEETTEEEECCCCCHHHHHHHHHHTTEEEEEEEEEECCG
T ss_pred             HHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecccCCcccccCCcccccCCCCHHHHHHHHHHCCCeEEEEEEeeccC
Confidence                               3345566655322      222333332 235799999999999999998877655443

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.61  E-value=2.1e-15  Score=140.59  Aligned_cols=78  Identities=19%  Similarity=0.177  Sum_probs=68.2

Q ss_pred             hhhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC-CCcEEEEEeeccCCccCCCCCCCce
Q 009871           69 RYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT-ETRVSTFVCDLISDDLSRQISPSSI  147 (523)
Q Consensus        69 ~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~-~~~v~~~~~d~~~~~~~~~~~~~~f  147 (523)
                      +.....++.+|||||||+|.++..|++++  .+|+|||+|+.|++.|+++.... ..++.++++|+.++    |+++++|
T Consensus        10 ~~~~~~~~~rILDiGcGtG~~~~~la~~~--~~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~----~~~~~~f   83 (234)
T d1xxla_          10 KTAECRAEHRVLDIGAGAGHTALAFSPYV--QECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESL----PFPDDSF   83 (234)
T ss_dssp             HHHTCCTTCEEEEESCTTSHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBC----CSCTTCE
T ss_pred             HHhCCCCCCEEEEeCCcCcHHHHHHHHhC--CeEEEEeCChhhhhhhhhhhcccccccccccccccccc----ccccccc
Confidence            44556789999999999999999999885  56999999999999999986433 36799999999987    7889999


Q ss_pred             eEEEE
Q 009871          148 DIVTM  152 (523)
Q Consensus       148 D~V~~  152 (523)
                      |+|+|
T Consensus        84 D~v~~   88 (234)
T d1xxla_          84 DIITC   88 (234)
T ss_dssp             EEEEE
T ss_pred             ceeee
Confidence            99999

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=6.7e-15  Score=135.95  Aligned_cols=136  Identities=13%  Similarity=0.010  Sum_probs=103.2

Q ss_pred             CCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhh
Q 009871          330 NPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEE  409 (523)
Q Consensus       330 ~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~  409 (523)
                      .+...++.+|||||||+|.++..+++.++.+|+++|+|+.|++.|++++..++.    ..+.+...|..+.       ++
T Consensus        55 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~ak~~~~~~~~----~~~~f~~~d~~~~-------~~  123 (222)
T d2ex4a1          55 GPNKTGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGK----RVRNYFCCGLQDF-------TP  123 (222)
T ss_dssp             ---CCCCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGG----GEEEEEECCGGGC-------CC
T ss_pred             ccCCCCCCEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHhhccccccccccc----ccccccccccccc-------cc
Confidence            344556789999999999888887777778999999999999999998877554    3455655554332       23


Q ss_pred             cCCCccEEEEccccCCCCC--hHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCC-------------ChhHHHHHHH
Q 009871          410 NNEGFEVILGTDVSYIPEA--ILPLFATAKELTASSNKSLREDQQPAFILCHIFRQV-------------DEPSMLSAAT  474 (523)
Q Consensus       410 ~~~~fD~Ii~~d~~y~~~~--~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~-------------~~~~~~~~~~  474 (523)
                      ++++||+|++..++++...  ...+++.++++|         +|+|.+++.......             +.+.+.+.++
T Consensus       124 ~~~~fD~I~~~~~l~h~~~~~~~~~l~~i~~~L---------k~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  194 (222)
T d2ex4a1         124 EPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSL---------RPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIIC  194 (222)
T ss_dssp             CSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHE---------EEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHH
T ss_pred             ccccccccccccccccchhhhhhhHHHHHHHhc---------CCcceEEEEEcccccccccccCCceeeCCHHHHHHHHH
Confidence            4579999999999988654  457999999999         679999887554221             3456888899


Q ss_pred             HcCCEEEEEcC
Q 009871          475 QCGFRLVDKWP  485 (523)
Q Consensus       475 ~~gf~~~~~~~  485 (523)
                      ++||++.+...
T Consensus       195 ~aGf~ii~~~~  205 (222)
T d2ex4a1         195 SAGLSLLAEER  205 (222)
T ss_dssp             HTTCCEEEEEE
T ss_pred             HcCCEEEEEEE
Confidence            99999887654

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=99.58  E-value=3.3e-15  Score=136.53  Aligned_cols=109  Identities=20%  Similarity=0.236  Sum_probs=78.4

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEEE-
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM-  152 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~-  152 (523)
                      .++.+|||||||+|.++..+.    .  ++|||+|+.|++.|+++      ++.++++|+.++    ++++++||+|+| 
T Consensus        35 ~~~~~vLDiGcG~G~~~~~~~----~--~~giD~s~~~~~~a~~~------~~~~~~~d~~~l----~~~~~~fD~I~~~   98 (208)
T d1vlma_          35 LPEGRGVEIGVGTGRFAVPLK----I--KIGVEPSERMAEIARKR------GVFVLKGTAENL----PLKDESFDFALMV   98 (208)
T ss_dssp             CCSSCEEEETCTTSTTHHHHT----C--CEEEESCHHHHHHHHHT------TCEEEECBTTBC----CSCTTCEEEEEEE
T ss_pred             CCCCeEEEECCCCcccccccc----e--EEEEeCChhhccccccc------cccccccccccc----ccccccccccccc
Confidence            346689999999999987774    2  68999999999999985      478999999988    778899999999 


Q ss_pred             ----------------ccccccceeeecceEEec-----------CC----eEEEeeCHHHHHHHHHhCCCcEEEEE
Q 009871          153 ----------------ERLTGKDQKISENFYVRG-----------DG----TRAFYFSNDFLTSLFKENGFDVEELG  198 (523)
Q Consensus       153 ----------------~~~~~~~~~~~~~~~~~~-----------~g----~~~~~~~~~~l~~ll~~~Gf~~~~~~  198 (523)
                                      .+++++++.+.-......           .+    ....+++.+++.++|+++||+++++.
T Consensus        99 ~~l~h~~d~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~~~Gf~~i~v~  175 (208)
T d1vlma_          99 TTICFVDDPERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVV  175 (208)
T ss_dssp             SCGGGSSCHHHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEEE
T ss_pred             cccccccccccchhhhhhcCCCCceEEEEecCCcchhHHhhhhccccccccccccCCCHHHHHHHHHHcCCeEEEEE
Confidence                            222333333221000000           00    00124689999999999999987654

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.58  E-value=2.5e-15  Score=144.21  Aligned_cols=123  Identities=15%  Similarity=0.076  Sum_probs=90.2

Q ss_pred             hcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC--CCcEEEEEeeccCCccCCCCCCCcee
Q 009871           71 FSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISDDLSRQISPSSID  148 (523)
Q Consensus        71 ~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~~~~~~~~~~fD  148 (523)
                      .+.+++.+|||||||+|.++..|++++ +++|+|||+|+.|++.|+++....  ..++++.++|+.++    |+++++||
T Consensus        63 ~~l~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l----~~~~~sfD  137 (282)
T d2o57a1          63 GVLQRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEI----PCEDNSYD  137 (282)
T ss_dssp             TCCCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSC----SSCTTCEE
T ss_pred             cCCCCCCEEEEeCCCCcHHHhhhhccC-CcEEEEEeccchhhhhhhcccccccccccccccccccccc----cccccccc
Confidence            355788999999999999999999875 578999999999999999876432  36899999999988    78899999


Q ss_pred             EEEE-----------------ccccccceeeecceEEecCCeE-------------EEeeCHHHHHHHHHhCCCcEEEEE
Q 009871          149 IVTM-----------------ERLTGKDQKISENFYVRGDGTR-------------AFYFSNDFLTSLFKENGFDVEELG  198 (523)
Q Consensus       149 ~V~~-----------------~~~~~~~~~~~~~~~~~~~g~~-------------~~~~~~~~l~~ll~~~Gf~~~~~~  198 (523)
                      +|++                 .+++++++.+.-......++..             ..+.+.+++.++++++||..+.+.
T Consensus       138 ~V~~~~~l~h~~d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~i~~~  217 (282)
T d2o57a1         138 FIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDPMKEDGIDKSSIQPILDRIKLHDMGSLGLYRSLAKECGLVTLRTF  217 (282)
T ss_dssp             EEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEECTTCCGGGGHHHHHHHTCSSCCCHHHHHHHHHHTTEEEEEEE
T ss_pred             hhhccchhhhccCHHHHHHHHHHhcCCCcEEEEEEeecCCCCchhHHHHHHHHhccCCCCCHHHHHHHHHHcCCceEEEE
Confidence            9999                 2333344333211111111110             012368889999999999876554

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=1.4e-14  Score=134.46  Aligned_cols=150  Identities=15%  Similarity=0.228  Sum_probs=99.6

Q ss_pred             HHHHHHHHhccccccc--chhhhHHHHhhhhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccc
Q 009871           43 KYWDLFYKRHQDRFFK--DRHYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKD  120 (523)
Q Consensus        43 ~~Wd~~y~~~~~~f~~--~~~~l~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~  120 (523)
                      +.|+..|+.....|..  ...++...+.+++...++.+|||+|||+|..+..|+++  +++|+|||+|+.||+.|+++..
T Consensus        11 e~W~~~~~~~~~~w~~~~~~~~l~~~~~~~l~~~~~~rvLd~GCG~G~~a~~LA~~--G~~V~gvD~S~~ai~~a~~~~~   88 (229)
T d2bzga1          11 EEWQDKWVNGKTAFHQEQGHQLLKKHLDTFLKGKSGLRVFFPLCGKAVEMKWFADR--GHSVVGVEISELGIQEFFTEQN   88 (229)
T ss_dssp             HHHHHHHHHTCCTTCCTTCCHHHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHT--TCEEEEECSCHHHHHHHHHHTT
T ss_pred             HHHHHHHccCCCCCccCCCCHHHHHHHHHhcCCCCCCEEEEeCCCCcHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHhh
Confidence            4566666665443332  23345555566677678899999999999999999998  6789999999999999987542


Q ss_pred             c------------------CCCcEEEEEeeccCCccCCCCCCCceeEEEE-------------------ccccccceeee
Q 009871          121 F------------------TETRVSTFVCDLISDDLSRQISPSSIDIVTM-------------------ERLTGKDQKIS  163 (523)
Q Consensus       121 ~------------------~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~-------------------~~~~~~~~~~~  163 (523)
                      .                  ...++++.++|+.++.   +...++||+|+.                   .+.+++++.+.
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~---~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~  165 (229)
T d2bzga1          89 LSYSEEPITEIPGTKVFKSSSGNISLYCCSIFDLP---RTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYL  165 (229)
T ss_dssp             CCEEEEECTTSTTCEEEEETTSSEEEEESCGGGGG---GSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEE
T ss_pred             ccccccchhcccccceeeecCCcEEEEEcchhhcc---ccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEE
Confidence            1                  2357899999998653   355789999998                   22233333321


Q ss_pred             cceEEecC---CeEEEeeCHHHHHHHHHhCCCcEEEEE
Q 009871          164 ENFYVRGD---GTRAFYFSNDFLTSLFKENGFDVEELG  198 (523)
Q Consensus       164 ~~~~~~~~---g~~~~~~~~~~l~~ll~~~Gf~~~~~~  198 (523)
                      -..+....   +...|..+.+++.++|.. +|.+..++
T Consensus       166 l~~~~~~~~~~~gpp~~~~~~el~~lf~~-~~~i~~le  202 (229)
T d2bzga1         166 LCVLSYDPTKHPGPPFYVPHAEIERLFGK-ICNIRCLE  202 (229)
T ss_dssp             EEEEECCTTTCCCSSCCCCHHHHHHHHTT-TEEEEEEE
T ss_pred             EEEcccCCCCCCCCCCCCCHHHHHHHhcC-CCEEEEEE
Confidence            11111110   001134589999999964 67765544

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.56  E-value=2.6e-14  Score=134.11  Aligned_cols=72  Identities=19%  Similarity=0.236  Sum_probs=62.4

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM  152 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~  152 (523)
                      .++++|||||||+|.++..|++++  .+|+|||+|+.||+.|+++....+.+++++++|+.++    ++ +++||+|+|
T Consensus        36 ~~~~~vLDiGCG~G~~~~~l~~~g--~~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~~----~~-~~~fD~i~~  107 (246)
T d1y8ca_          36 LVFDDYLDLACGTGNLTENLCPKF--KNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNL----NI-NRKFDLITC  107 (246)
T ss_dssp             CCTTEEEEETCTTSTTHHHHGGGS--SEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGC----CC-SCCEEEEEE
T ss_pred             CCCCeEEEEeCcCCHHHHHHHHhC--CccEeeccchhhhhhccccccccCccceeeccchhhh----cc-cccccccce
Confidence            456799999999999999999984  5799999999999999998766667899999999876    33 468999998

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.55  E-value=6.6e-14  Score=133.57  Aligned_cols=146  Identities=14%  Similarity=0.113  Sum_probs=116.1

Q ss_pred             hhHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeec
Q 009871          318 ESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEW  397 (523)
Q Consensus       318 ~~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw  397 (523)
                      +|-....+.+.+...+.+|.+|||||||.|+++..+|+..+.+|+++++|++.++.+++.+...++.   .++.+...|+
T Consensus        44 ~Aq~~k~~~~~~~l~l~~G~~VLDiGCG~G~~~~~~a~~~g~~v~git~s~~q~~~a~~~~~~~~l~---~~v~~~~~d~  120 (291)
T d1kpia_          44 EAQYAKRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSP---RRKEVRIQGW  120 (291)
T ss_dssp             HHHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHSCCS---SCEEEEECCG
T ss_pred             HHHHHHHHHHHHhcCCCCCCEEEEecCcchHHHHHHHHhcCcceeeccchHHHHHHHHHHHHhhccc---hhhhhhhhcc
Confidence            4556678888888888999999999999999998888775669999999999999999999887775   5566655443


Q ss_pred             CCCCcchhhhhhcCCCccEEEEccccCCCC---------ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecC-----
Q 009871          398 GNRDHIEAIKEENNEGFEVILGTDVSYIPE---------AILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ-----  463 (523)
Q Consensus       398 ~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~---------~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~-----  463 (523)
                      .          ..+++||.|++-.++-+..         .++.+++.+.++|         +|||.+++.....+     
T Consensus       121 ~----------~~~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~L---------kpgG~~~l~~i~~~~~~~~  181 (291)
T d1kpia_         121 E----------EFDEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLT---------PDDGRMLLHTITIPDKEEA  181 (291)
T ss_dssp             G----------GCCCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTS---------CTTCEEEEEEEECCCHHHH
T ss_pred             c----------ccccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhC---------CCCCceEEEEEeccCcchh
Confidence            2          2357999999999987643         4689999999999         78999998654321     


Q ss_pred             ----------------------------CChhHHHHHHHHcCCEEEEEcC
Q 009871          464 ----------------------------VDEPSMLSAATQCGFRLVDKWP  485 (523)
Q Consensus       464 ----------------------------~~~~~~~~~~~~~gf~~~~~~~  485 (523)
                                                  ++...+...+++.||++..+..
T Consensus       182 ~~~~~~~p~~~~~~~~fi~kyiFpgg~lps~~~~~~~~e~~gl~v~~~~~  231 (291)
T d1kpia_         182 QELGLTSPMSLLRFIKFILTEIFPGGRLPRISQVDYYSSNAGWKVERYHR  231 (291)
T ss_dssp             HHHTCCCCHHHHHHHHHHHHHTCTTCCCCCHHHHHHHHHHHTCEEEEEEE
T ss_pred             hhccCCCchhhcccchHHHHHhcCCCCCCCHHHHHhhhcccccccceeee
Confidence                                        1334566778899999988755

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.55  E-value=3e-14  Score=135.55  Aligned_cols=145  Identities=12%  Similarity=0.094  Sum_probs=112.7

Q ss_pred             hhHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeec
Q 009871          318 ESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEW  397 (523)
Q Consensus       318 ~~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw  397 (523)
                      .|.....+.+.+...+.+|.+|||||||+|+++..+++..+.+|+++|+|++.++.+++++...++.   ..+.+...|.
T Consensus        35 ~AQ~~k~~~~~~~l~l~~g~~VLDiGCG~G~~a~~~a~~~g~~v~gi~ls~~q~~~a~~~~~~~~l~---~~~~~~~~d~  111 (280)
T d2fk8a1          35 EAQYAKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTN---RSRQVLLQGW  111 (280)
T ss_dssp             HHHHHHHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCS---SCEEEEESCG
T ss_pred             HHHHHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhCceeEEEecchHHHHHHHHHHHHhhccc---cchhhhhhhh
Confidence            3445566778788888899999999999999998888775569999999999999999999888775   4455544333


Q ss_pred             CCCCcchhhhhhcCCCccEEEEccccCCC--CChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec-------------
Q 009871          398 GNRDHIEAIKEENNEGFEVILGTDVSYIP--EAILPLFATAKELTASSNKSLREDQQPAFILCHIFR-------------  462 (523)
Q Consensus       398 ~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~--~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r-------------  462 (523)
                      .+          .+++||.|++.+++.+.  ...+.+++.+.++|         +|||.+++.....             
T Consensus       112 ~~----------~~~~fD~i~si~~~eh~~~~~~~~~f~~i~~~L---------kpgG~~~i~~i~~~~~~~~~~~~~~~  172 (280)
T d2fk8a1         112 ED----------FAEPVDRIVSIEAFEHFGHENYDDFFKRCFNIM---------PADGRMTVQSSVSYHPYEMAARGKKL  172 (280)
T ss_dssp             GG----------CCCCCSEEEEESCGGGTCGGGHHHHHHHHHHHS---------CTTCEEEEEEEECCCHHHHHTTCHHH
T ss_pred             hh----------hccchhhhhHhhHHHHhhhhhHHHHHHHHHhcc---------CCCceEEEEEeeccCcchhhhccccc
Confidence            22          25699999999999886  46689999999999         7899998864321             


Q ss_pred             --------------------CCChhHHHHHHHHcCCEEEEEc
Q 009871          463 --------------------QVDEPSMLSAATQCGFRLVDKW  484 (523)
Q Consensus       463 --------------------~~~~~~~~~~~~~~gf~~~~~~  484 (523)
                                          -++...+.+.+++.||++..+.
T Consensus       173 ~~~~~~~~dfI~kyifPgg~lPS~~~l~~~~e~aGf~v~~~~  214 (280)
T d2fk8a1         173 SFETARFIKFIVTEIFPGGRLPSTEMMVEHGEKAGFTVPEPL  214 (280)
T ss_dssp             HHHHHHHHHHHHHHTSTTCCCCCHHHHHHHHHHTTCBCCCCE
T ss_pred             ccccccccchhhhhccCCCcccchHhhhhhHHhhccccceee
Confidence                                1233456677888999987664

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.55  E-value=7.4e-15  Score=137.81  Aligned_cols=119  Identities=16%  Similarity=0.211  Sum_probs=88.3

Q ss_pred             hhhhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC--CCcEEEEEeeccCCccCCCCCCC
Q 009871           68 GRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISDDLSRQISPS  145 (523)
Q Consensus        68 ~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~~~~~~~~~  145 (523)
                      .+.+...++.+|||||||+|..+..++++. +++|+|||+|+.|++.|+++....  ..+++|+++|+.++     ++++
T Consensus        26 ~~~~~l~pg~~VLDiGCG~G~~~~~la~~~-~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~-----~~~~   99 (245)
T d1nkva_          26 GRVLRMKPGTRILDLGSGSGEMLCTWARDH-GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGY-----VANE   99 (245)
T ss_dssp             HHHTCCCTTCEEEEETCTTCHHHHHHHHHT-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTC-----CCSS
T ss_pred             HHHcCCCCCCEEEEEcCCCCHHHHHHHHhc-CCEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhc-----cccC
Confidence            345566789999999999999999998876 478999999999999999976433  35799999999875     3578


Q ss_pred             ceeEEEE----------ccccccceeeecceEEecCCeEEE-------------------------eeCHHHHHHHHHhC
Q 009871          146 SIDIVTM----------ERLTGKDQKISENFYVRGDGTRAF-------------------------YFSNDFLTSLFKEN  190 (523)
Q Consensus       146 ~fD~V~~----------~~~~~~~~~~~~~~~~~~~g~~~~-------------------------~~~~~~l~~ll~~~  190 (523)
                      +||+|+|          ..+++...+     .++|+|.+++                         +.+..++...++++
T Consensus       100 ~fD~v~~~~~~~~~~d~~~~l~~~~r-----~LkPGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  174 (245)
T d1nkva_         100 KCDVAACVGATWIAGGFAGAEELLAQ-----SLKPGGIMLIGEPYWRQLPATEEIAQACGVSSTSDFLTLPGLVGAFDDL  174 (245)
T ss_dssp             CEEEEEEESCGGGTSSSHHHHHHHTT-----SEEEEEEEEEEEEEETTCCSSHHHHHTTTCSCGGGSCCHHHHHHHHHTT
T ss_pred             ceeEEEEEehhhccCCHHHHHHHHHH-----HcCcCcEEEEEeccccCCCChHHHHHHhccCCCcccCCHHHHHHHHHHc
Confidence            9999999          000111111     3444444332                         24778899999999


Q ss_pred             CCcEEEE
Q 009871          191 GFDVEEL  197 (523)
Q Consensus       191 Gf~~~~~  197 (523)
                      ||+++..
T Consensus       175 G~~~v~~  181 (245)
T d1nkva_         175 GYDVVEM  181 (245)
T ss_dssp             TBCCCEE
T ss_pred             CCEEEEE
Confidence            9987544

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.54  E-value=9.9e-14  Score=131.91  Aligned_cols=146  Identities=16%  Similarity=0.142  Sum_probs=118.9

Q ss_pred             hhHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeec
Q 009871          318 ESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEW  397 (523)
Q Consensus       318 ~~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw  397 (523)
                      +|...+.+++.+...+.+|.+|||||||.|+++..+|+..+.+|+++++|++.++.+++++...+..   .++.+...|+
T Consensus        45 eAQ~~k~~~~~~~l~l~~G~~VLDiGCG~G~~a~~~a~~~g~~v~git~s~~Q~~~a~~~~~~~g~~---~~v~~~~~d~  121 (285)
T d1kpga_          45 EAQIAKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENL---RSKRVLLAGW  121 (285)
T ss_dssp             HHHHHHHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCC---SCEEEEESCG
T ss_pred             HHHHHHHHHHHHHcCCCCCCEEEEecCcchHHHHHHHhcCCcceEEEeccHHHHHHHHHHHHhhhhh---hhhHHHHhhh
Confidence            5666688999998889999999999999999999888875679999999999999999998887765   6777776666


Q ss_pred             CCCCcchhhhhhcCCCccEEEEccccCCC--CChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec-------------
Q 009871          398 GNRDHIEAIKEENNEGFEVILGTDVSYIP--EAILPLFATAKELTASSNKSLREDQQPAFILCHIFR-------------  462 (523)
Q Consensus       398 ~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~--~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r-------------  462 (523)
                      .+.          +++||.|++..++-+.  .....+++.+.++|         +|||.+++.....             
T Consensus       122 ~~~----------~~~fD~i~si~~~eh~~~~~~~~~~~~~~r~L---------kpgG~~~l~~i~~~~~~~~~~~~~~~  182 (285)
T d1kpga_         122 EQF----------DEPVDRIVSIGAFEHFGHERYDAFFSLAHRLL---------PADGVMLLHTITGLHPKEIHERGLPM  182 (285)
T ss_dssp             GGC----------CCCCSEEEEESCGGGTCTTTHHHHHHHHHHHS---------CTTCEEEEEEEEECCHHHHTTTTCSC
T ss_pred             hcc----------cccccceeeehhhhhcCchhHHHHHHHHHhhc---------CCCCcEEEEEEeccCchhhccccCCc
Confidence            432          4689999999988775  56789999999999         7899998755431             


Q ss_pred             --------------------CCChhHHHHHHHHcCCEEEEEcC
Q 009871          463 --------------------QVDEPSMLSAATQCGFRLVDKWP  485 (523)
Q Consensus       463 --------------------~~~~~~~~~~~~~~gf~~~~~~~  485 (523)
                                          -++...+...+++.||++.+++.
T Consensus       183 ~~~~~~~~~fi~kyiFpgg~lPsl~~~~~~~e~agf~v~~~~~  225 (285)
T d1kpga_         183 SFTFARFLKFIVTEIFPGGRLPSIPMVQECASANGFTVTRVQS  225 (285)
T ss_dssp             HHHHHHHHHHHHHHTSTTCCCCCHHHHHHHHHTTTCEEEEEEE
T ss_pred             chhhhchhhHHHHHhccCCCCCChhhHHHHHHHhchhhccccc
Confidence                                11334566778899999998854

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.53  E-value=6.5e-15  Score=136.09  Aligned_cols=73  Identities=23%  Similarity=0.266  Sum_probs=65.0

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM  152 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~  152 (523)
                      +++.+|||||||+|.++..+++.  +.+|+|+|+|+.|++.|+++.......+.++++|+.++    ++++++||+|+|
T Consensus        36 ~~~~~ILDiGcG~G~~~~~la~~--~~~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l----~~~~~~fD~I~~  108 (226)
T d1ve3a1          36 KKRGKVLDLACGVGGFSFLLEDY--GFEVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKL----SFEDKTFDYVIF  108 (226)
T ss_dssp             CSCCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSC----CSCTTCEEEEEE
T ss_pred             CCCCEEEEECCCcchhhhhHhhh--hcccccccccccchhhhhhhhccccccccccccccccc----cccCcCceEEEE
Confidence            46789999999999999999987  56799999999999999997755556788999999988    788899999999

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.51  E-value=2.8e-14  Score=131.93  Aligned_cols=73  Identities=19%  Similarity=0.269  Sum_probs=60.0

Q ss_pred             CCCCeEEEECCCccccHHHHHhh--CCCCEEEEEeCCHHHHHHHHhccccC--CCcEEEEEeeccCCccCCCCCCCceeE
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAA--YPDVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISDDLSRQISPSSIDI  149 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~--~~~~~v~gvD~S~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~~~~~~~~~~fD~  149 (523)
                      +++.+|||||||+|..+..|++.  .|+++|+|+|+|+.|++.|+++....  ..++.+..+|+.+.      +.+.+|+
T Consensus        38 ~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~------~~~~~d~  111 (225)
T d1im8a_          38 TADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHV------EIKNASM  111 (225)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTC------CCCSEEE
T ss_pred             CCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhcc------cccccee
Confidence            57789999999999999999986  47889999999999999999975432  35677777777643      4567899


Q ss_pred             EEE
Q 009871          150 VTM  152 (523)
Q Consensus       150 V~~  152 (523)
                      |++
T Consensus       112 i~~  114 (225)
T d1im8a_         112 VIL  114 (225)
T ss_dssp             EEE
T ss_pred             eEE
Confidence            998

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=99.50  E-value=6.2e-14  Score=131.81  Aligned_cols=124  Identities=14%  Similarity=0.135  Sum_probs=87.8

Q ss_pred             hhhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCcee
Q 009871           69 RYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSID  148 (523)
Q Consensus        69 ~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD  148 (523)
                      +.++.....+|||+|||+|+.+..|+..+. ..|+|||+|+.|++.|+++... ..+++++++|+.++    ++++++||
T Consensus        87 ~~l~~~~~~~vLD~GcG~G~~t~~ll~~~~-~~v~~vD~s~~~l~~a~~~~~~-~~~~~~~~~d~~~~----~~~~~~fD  160 (254)
T d1xtpa_          87 ASLPGHGTSRALDCGAGIGRITKNLLTKLY-ATTDLLEPVKHMLEEAKRELAG-MPVGKFILASMETA----TLPPNTYD  160 (254)
T ss_dssp             HTSTTCCCSEEEEETCTTTHHHHHTHHHHC-SEEEEEESCHHHHHHHHHHTTT-SSEEEEEESCGGGC----CCCSSCEE
T ss_pred             hhCCCCCCCeEEEecccCChhhHHHHhhcC-ceEEEEcCCHHHHHhhhccccc-cccceeEEcccccc----ccCCCccc
Confidence            445556788999999999999998887643 3699999999999999987642 35689999999987    66788999


Q ss_pred             EEEE-------------------ccccccceeeecceEEec-CCeE------EEeeCHHHHHHHHHhCCCcEEEEE
Q 009871          149 IVTM-------------------ERLTGKDQKISENFYVRG-DGTR------AFYFSNDFLTSLFKENGFDVEELG  198 (523)
Q Consensus       149 ~V~~-------------------~~~~~~~~~~~~~~~~~~-~g~~------~~~~~~~~l~~ll~~~Gf~~~~~~  198 (523)
                      +|++                   .+.+++++.+.-...... ++..      .++++.+++.++|+++||++++..
T Consensus       161 ~I~~~~vl~hl~d~d~~~~l~~~~~~LkpgG~iii~e~~~~~~~~~~d~~d~~~~rs~~~~~~l~~~aGf~ii~~~  236 (254)
T d1xtpa_         161 LIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVKEA  236 (254)
T ss_dssp             EEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEEEEE
T ss_pred             eEEeeccccccchhhhHHHHHHHHHhcCCCcEEEEEecCCCCCcceecccCCceeCCHHHHHHHHHHcCCEEEEEE
Confidence            9999                   122233332221000001 1111      123588999999999999987654

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=99.48  E-value=1.6e-13  Score=129.03  Aligned_cols=172  Identities=16%  Similarity=0.151  Sum_probs=121.4

Q ss_pred             CCCCCCceEEEEEEcCceEEEEEecccccccCCCcccccchhHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcC
Q 009871          278 LSSFEDNEMIEVNLRDRSFKIEVLSKEYQHTCRSTGLMLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGS  357 (523)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~G~~~W~~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~  357 (523)
                      ...|-.+-.-...|.|.++.|.          ..+=.+..++..++...+....  ..+.+|||||||+|.+++.+++..
T Consensus        63 ~g~PlqYI~G~~~F~~~~~~v~----------~~VlIPRpeTE~lv~~~l~~~~--~~~~~vlDlGtGSG~I~i~la~~~  130 (274)
T d2b3ta1          63 DGEPIAHLTGVREFWSLPLFVS----------PATLIPRPDTECLVEQALARLP--EQPCRILDLGTGTGAIALALASER  130 (274)
T ss_dssp             TTCCHHHHSCEEEETTEEEECC----------TTSCCCCTTHHHHHHHHHHHSC--SSCCEEEEETCTTSHHHHHHHHHC
T ss_pred             cCcChhhhcCcEEEeeeEEEEe----------ccccccccchhhhhhhHhhhhc--ccccceeeeehhhhHHHHHHHhhC
Confidence            3444445555677888777765          3444566666666555554433  356789999999999998888864


Q ss_pred             -CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCccEEEEccccCCCC---------
Q 009871          358 -ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPE---------  427 (523)
Q Consensus       358 -~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~---------  427 (523)
                       ..+|+++|+|+.+++.|++|+..+++.    ++.+...||.+.        +...+||+|+++......+         
T Consensus       131 p~~~v~avDis~~Al~~A~~Na~~~~~~----~v~~~~~d~~~~--------~~~~~fDlIvsNPPYi~~~~~~~~~~v~  198 (274)
T d2b3ta1         131 PDCEIIAVDRMPDAVSLAQRNAQHLAIK----NIHILQSDWFSA--------LAGQQFAMIVSNPPYIDEQDPHLQQGDV  198 (274)
T ss_dssp             TTSEEEEECSSHHHHHHHHHHHHHHTCC----SEEEECCSTTGG--------GTTCCEEEEEECCCCBCTTCHHHHSSGG
T ss_pred             CcceeeeccchhHHHhHHHHHHHHhCcc----cceeeecccccc--------cCCCceeEEEecchhhhhhhhccccccc
Confidence             559999999999999999999998873    578888777543        2346899999986644322         


Q ss_pred             ----------------ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhHHHHHHHHcCCEEEEEc
Q 009871          428 ----------------AILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLVDKW  484 (523)
Q Consensus       428 ----------------~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~~~~~~~~gf~~~~~~  484 (523)
                                      .+..++..+.++|         +++|.+++-...  .....+.+.+++.||...+++
T Consensus       199 ~~eP~~AL~~g~dGl~~~~~i~~~a~~~L---------~~~G~l~lEig~--~q~~~v~~~l~~~gf~~i~~~  260 (274)
T d2b3ta1         199 RFEPLTALVAADSGMADIVHIIEQSRNAL---------VSGGFLLLEHGW--QQGEAVRQAFILAGYHDVETC  260 (274)
T ss_dssp             GSSCSTTTBCHHHHTHHHHHHHHHHGGGE---------EEEEEEEEECCS--SCHHHHHHHHHHTTCTTCCEE
T ss_pred             ccchhhhcccccccchHHHHHHHHHHHhc---------CCCCEEEEEECc--hHHHHHHHHHHHCCCCeEEEE
Confidence                            2344666666777         568998886543  234567888889999754443

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.47  E-value=7.8e-14  Score=124.81  Aligned_cols=126  Identities=13%  Similarity=0.143  Sum_probs=95.1

Q ss_pred             CCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcC
Q 009871          332 TIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENN  411 (523)
Q Consensus       332 ~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~  411 (523)
                      ...+|.+|||+|||+|.++..+|.. +.+|+++|+++.+++.|++|++.+++.   .++.+...|..+.       ....
T Consensus        30 ~~~~g~~VLDiGcGsG~~s~~lA~~-~~~V~avD~~~~~l~~a~~n~~~~gl~---~~v~~~~gda~~~-------~~~~   98 (186)
T d1l3ia_          30 EPGKNDVAVDVGCGTGGVTLELAGR-VRRVYAIDRNPEAISTTEMNLQRHGLG---DNVTLMEGDAPEA-------LCKI   98 (186)
T ss_dssp             CCCTTCEEEEESCTTSHHHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHTTCC---TTEEEEESCHHHH-------HTTS
T ss_pred             CCCCCCEEEEEECCeEccccccccc-ceEEEEecCCHHHHHHHHHHHHHcCCC---cceEEEECchhhc-------cccc
Confidence            4468999999999999888887765 468999999999999999999999886   4677665543211       1234


Q ss_pred             CCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhHHHHHHHHcCCEEE
Q 009871          412 EGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLV  481 (523)
Q Consensus       412 ~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~~~~~~~~gf~~~  481 (523)
                      ..||+|++....   .....+++.+.++|         +|+|.+++.... ......+.+.+++.|+.+.
T Consensus        99 ~~~D~v~~~~~~---~~~~~~~~~~~~~L---------kpgG~lvi~~~~-~e~~~~~~~~l~~~~~~~~  155 (186)
T d1l3ia_          99 PDIDIAVVGGSG---GELQEILRIIKDKL---------KPGGRIIVTAIL-LETKFEAMECLRDLGFDVN  155 (186)
T ss_dssp             CCEEEEEESCCT---TCHHHHHHHHHHTE---------EEEEEEEEEECB-HHHHHHHHHHHHHTTCCCE
T ss_pred             CCcCEEEEeCcc---ccchHHHHHHHHHh---------CcCCEEEEEeec-cccHHHHHHHHHHcCCCeE
Confidence            689999987543   45788999999999         679988776533 2233456777888887543

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=99.47  E-value=1.2e-13  Score=127.52  Aligned_cols=124  Identities=11%  Similarity=0.104  Sum_probs=97.2

Q ss_pred             CCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCC
Q 009871          334 VAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG  413 (523)
Q Consensus       334 ~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~  413 (523)
                      .++++|||||||+|.++..++..+. +|+++|+|+++++.++.+..        ..+.+...++.+.       . .+++
T Consensus        19 ~~~~~VLDiGcG~G~~~~~l~~~g~-~v~giD~s~~~i~~a~~~~~--------~~~~~~~~~~~~~-------~-~~~~   81 (225)
T d2p7ia1          19 FRPGNLLELGSFKGDFTSRLQEHFN-DITCVEASEEAISHAQGRLK--------DGITYIHSRFEDA-------Q-LPRR   81 (225)
T ss_dssp             CCSSCEEEESCTTSHHHHHHTTTCS-CEEEEESCHHHHHHHHHHSC--------SCEEEEESCGGGC-------C-CSSC
T ss_pred             CCCCcEEEEeCCCcHHHHHHHHcCC-eEEEEeCcHHHhhhhhcccc--------ccccccccccccc-------c-cccc
Confidence            4678999999999988888877764 69999999999999987632        2355555444332       1 2568


Q ss_pred             ccEEEEccccCCCCChHHHHHHHH-HHhhccCCCCCCCCCcEEEEEEee-------------------------------
Q 009871          414 FEVILGTDVSYIPEAILPLFATAK-ELTASSNKSLREDQQPAFILCHIF-------------------------------  461 (523)
Q Consensus       414 fD~Ii~~d~~y~~~~~~~l~~~l~-~ll~~~~~~~~~~~~g~~~l~~~~-------------------------------  461 (523)
                      ||+|++.+++++.++...++..+. ++|         +|||.+++..+.                               
T Consensus        82 fD~I~~~~vleh~~d~~~~l~~i~~~~L---------k~gG~l~i~~pn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  152 (225)
T d2p7ia1          82 YDNIVLTHVLEHIDDPVALLKRINDDWL---------AEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHR  152 (225)
T ss_dssp             EEEEEEESCGGGCSSHHHHHHHHHHTTE---------EEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTTCC
T ss_pred             cccccccceeEecCCHHHHHHHHHHHhc---------CCCceEEEEeCCcccHHHHHHHHhhhhhhhhhcCccccceeee
Confidence            999999999999999999999987 688         679999987642                               


Q ss_pred             cCCChhHHHHHHHHcCCEEEEE
Q 009871          462 RQVDEPSMLSAATQCGFRLVDK  483 (523)
Q Consensus       462 r~~~~~~~~~~~~~~gf~~~~~  483 (523)
                      |..+...+...+.++||++...
T Consensus       153 ~~~~~~~l~~~l~~~Gf~i~~~  174 (225)
T d2p7ia1         153 CTYALDTLERDASRAGLQVTYR  174 (225)
T ss_dssp             CCCCHHHHHHHHHHTTCEEEEE
T ss_pred             eccCHHHHHHHHHHCCCEEEEE
Confidence            2234566888899999998875

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=99.47  E-value=6.9e-14  Score=129.25  Aligned_cols=69  Identities=14%  Similarity=0.156  Sum_probs=58.9

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM  152 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~  152 (523)
                      ..+++|||||||+|.++..+++.+  .+|+|||+|++|++.|+++..   .+++++++|+.+.    + .+++||+|+|
T Consensus        19 ~~~~~VLDiGcG~G~~~~~l~~~g--~~v~giD~s~~~i~~a~~~~~---~~~~~~~~~~~~~----~-~~~~fD~I~~   87 (225)
T d2p7ia1          19 FRPGNLLELGSFKGDFTSRLQEHF--NDITCVEASEEAISHAQGRLK---DGITYIHSRFEDA----Q-LPRRYDNIVL   87 (225)
T ss_dssp             CCSSCEEEESCTTSHHHHHHTTTC--SCEEEEESCHHHHHHHHHHSC---SCEEEEESCGGGC----C-CSSCEEEEEE
T ss_pred             CCCCcEEEEeCCCcHHHHHHHHcC--CeEEEEeCcHHHhhhhhcccc---ccccccccccccc----c-cccccccccc
Confidence            356789999999999999998884  459999999999999998753   4689999999866    3 3578999999

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.46  E-value=1.7e-13  Score=124.01  Aligned_cols=71  Identities=23%  Similarity=0.237  Sum_probs=60.7

Q ss_pred             CCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC-CCcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871           75 GRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT-ETRVSTFVCDLISDDLSRQISPSSIDIVTM  152 (523)
Q Consensus        75 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~-~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~  152 (523)
                      .+++|||||||+|.++..|+++  +.+|+|+|+|+.|++.|+++.... ..++.+...|+...    + ++++||+|++
T Consensus        30 ~~grvLDiGcG~G~~~~~la~~--g~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~----~-~~~~fD~I~~  101 (198)
T d2i6ga1          30 APGRTLDLGCGNGRNSLYLAAN--GYDVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTL----T-FDGEYDFILS  101 (198)
T ss_dssp             CSCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTC----C-CCCCEEEEEE
T ss_pred             CCCcEEEECCCCCHHHHHHHHH--hhhhccccCcHHHHHHHHHHhhhccccchhhhheecccc----c-ccccccEEEE
Confidence            4569999999999999999998  567999999999999999876433 35789999999876    3 3678999999

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.46  E-value=4e-13  Score=124.00  Aligned_cols=106  Identities=12%  Similarity=0.115  Sum_probs=82.4

Q ss_pred             CCCCeEEEECCCccHHHHHHHhc---CCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhc
Q 009871          334 VAGKKVLELGCGCGGICSMVAAG---SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEEN  410 (523)
Q Consensus       334 ~~~~~VLElG~G~G~l~~~~a~~---~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~  410 (523)
                      .++.+|||||||+|.++..++..   ...+|+|+|+|+.|++.|++++...+..   ..+.+...+..         +++
T Consensus        38 ~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~---~~~~~~~~d~~---------~~~  105 (225)
T d1im8a_          38 TADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSE---IPVEILCNDIR---------HVE  105 (225)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCS---SCEEEECSCTT---------TCC
T ss_pred             CCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhccc---chhhhccchhh---------ccc
Confidence            36789999999999888777764   3459999999999999999998876543   34444332221         234


Q ss_pred             CCCccEEEEccccCCC--CChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEe
Q 009871          411 NEGFEVILGTDVSYIP--EAILPLFATAKELTASSNKSLREDQQPAFILCHI  460 (523)
Q Consensus       411 ~~~fD~Ii~~d~~y~~--~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~  460 (523)
                      ...+|+|+++.++++.  +....+++.+.+.|         +|||.+++...
T Consensus       106 ~~~~d~i~~~~~l~~~~~~d~~~~l~~i~~~L---------kpgG~li~~~~  148 (225)
T d1im8a_         106 IKNASMVILNFTLQFLPPEDRIALLTKIYEGL---------NPNGVLVLSEK  148 (225)
T ss_dssp             CCSEEEEEEESCGGGSCGGGHHHHHHHHHHHE---------EEEEEEEEEEE
T ss_pred             cccceeeEEeeeccccChhhHHHHHHHHHHhC---------CCCceeecccc
Confidence            5689999999888775  57889999999999         77999998754

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=99.46  E-value=3.8e-14  Score=132.38  Aligned_cols=113  Identities=13%  Similarity=0.142  Sum_probs=87.4

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEEE-
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM-  152 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~-  152 (523)
                      .++.+|||+|||+|.++..+++.  +++|+|+|+|+.|++.|+++.+.++.+++++++|+.+     .++.++||+|++ 
T Consensus       119 ~~g~~VLDiGcGsG~l~i~aa~~--g~~V~gvDis~~av~~A~~na~~n~~~~~~~~~d~~~-----~~~~~~fD~V~an  191 (254)
T d2nxca1         119 RPGDKVLDLGTGSGVLAIAAEKL--GGKALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEA-----ALPFGPFDLLVAN  191 (254)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHH-----HGGGCCEEEEEEE
T ss_pred             CccCEEEEcccchhHHHHHHHhc--CCEEEEEECChHHHHHHHHHHHHcCCceeEEeccccc-----cccccccchhhhc
Confidence            57889999999999999888876  5679999999999999999887666677889988864     345689999999 


Q ss_pred             ------ccccccceeeecceEEecCCeEEE----eeCHHHHHHHHHhCCCcEEEEE
Q 009871          153 ------ERLTGKDQKISENFYVRGDGTRAF----YFSNDFLTSLFKENGFDVEELG  198 (523)
Q Consensus       153 ------~~~~~~~~~~~~~~~~~~~g~~~~----~~~~~~l~~ll~~~Gf~~~~~~  198 (523)
                            ..+.+...+     .++++|.++.    ....+++.+.++++||.+++..
T Consensus       192 i~~~~l~~l~~~~~~-----~LkpGG~lilSgil~~~~~~v~~~~~~~Gf~~~~~~  242 (254)
T d2nxca1         192 LYAELHAALAPRYRE-----ALVPGGRALLTGILKDRAPLVREAMAGAGFRPLEEA  242 (254)
T ss_dssp             CCHHHHHHHHHHHHH-----HEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEE
T ss_pred             cccccHHHHHHHHHH-----hcCCCcEEEEEecchhhHHHHHHHHHHCCCEEEEEE
Confidence                  122222222     5677777654    2356789999999999876543

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=99.44  E-value=4.9e-13  Score=125.59  Aligned_cols=140  Identities=8%  Similarity=0.003  Sum_probs=102.0

Q ss_pred             HHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcc
Q 009871          324 AAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHI  403 (523)
Q Consensus       324 a~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~  403 (523)
                      ++.+++.....++.+|||+|||+|.++..++..+..+|+++|+++.|++.|+++....      ..+.+...+..+.   
T Consensus        82 s~~fl~~l~~~~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~~~------~~~~~~~~d~~~~---  152 (254)
T d1xtpa_          82 SRNFIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGM------PVGKFILASMETA---  152 (254)
T ss_dssp             HHHHHHTSTTCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTS------SEEEEEESCGGGC---
T ss_pred             HHHHHhhCCCCCCCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHHHhhhcccccc------ccceeEEcccccc---
Confidence            3444444444567899999999998888888777779999999999999999775431      3345544433221   


Q ss_pred             hhhhhhcCCCccEEEEccccCCCCC--hHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecC--------------CChh
Q 009871          404 EAIKEENNEGFEVILGTDVSYIPEA--ILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ--------------VDEP  467 (523)
Q Consensus       404 ~~~~~~~~~~fD~Ii~~d~~y~~~~--~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~--------------~~~~  467 (523)
                          ++.+++||+|++..++++...  +..+++.++++|         +|+|.+++......              .+..
T Consensus       153 ----~~~~~~fD~I~~~~vl~hl~d~d~~~~l~~~~~~L---------kpgG~iii~e~~~~~~~~~~d~~d~~~~rs~~  219 (254)
T d1xtpa_         153 ----TLPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQAL---------TPNGYIFFKENCSTGDRFLVDKEDSSLTRSDI  219 (254)
T ss_dssp             ----CCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHE---------EEEEEEEEEEEBC--CCEEEETTTTEEEBCHH
T ss_pred             ----ccCCCccceEEeeccccccchhhhHHHHHHHHHhc---------CCCcEEEEEecCCCCCcceecccCCceeCCHH
Confidence                234578999999999998754  458899999999         67999988654321              1235


Q ss_pred             HHHHHHHHcCCEEEEEcC
Q 009871          468 SMLSAATQCGFRLVDKWP  485 (523)
Q Consensus       468 ~~~~~~~~~gf~~~~~~~  485 (523)
                      .+.+.++++||++.+...
T Consensus       220 ~~~~l~~~aGf~ii~~~~  237 (254)
T d1xtpa_         220 HYKRLFNESGVRVVKEAF  237 (254)
T ss_dssp             HHHHHHHHHTCCEEEEEE
T ss_pred             HHHHHHHHcCCEEEEEEe
Confidence            678889999999876543

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.44  E-value=2.8e-13  Score=124.78  Aligned_cols=115  Identities=16%  Similarity=0.159  Sum_probs=87.4

Q ss_pred             HHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCc
Q 009871          323 MAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDH  402 (523)
Q Consensus       323 la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~  402 (523)
                      +..++.++.  .++.+|||||||+|.++..++..+ .+|+|+|+|+.|++.|++++...+..     +.....|..+.  
T Consensus        27 ~~~~~~~~l--~~~~~ILDiGcG~G~~~~~la~~~-~~v~giD~S~~~i~~ak~~~~~~~~~-----~~~~~~d~~~l--   96 (226)
T d1ve3a1          27 LEPLLMKYM--KKRGKVLDLACGVGGFSFLLEDYG-FEVVGVDISEDMIRKAREYAKSRESN-----VEFIVGDARKL--   96 (226)
T ss_dssp             HHHHHHHSC--CSCCEEEEETCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCC-----CEEEECCTTSC--
T ss_pred             HHHHHHHhc--CCCCEEEEECCCcchhhhhHhhhh-cccccccccccchhhhhhhhcccccc-----ccccccccccc--
Confidence            455555543  366799999999998888888775 57999999999999999988775432     33333333322  


Q ss_pred             chhhhhhcCCCccEEEEccccCCCC--ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee
Q 009871          403 IEAIKEENNEGFEVILGTDVSYIPE--AILPLFATAKELTASSNKSLREDQQPAFILCHIF  461 (523)
Q Consensus       403 ~~~~~~~~~~~fD~Ii~~d~~y~~~--~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~  461 (523)
                           ++..++||+|++.+++++..  .+..+++.+.++|         +|||.+++....
T Consensus        97 -----~~~~~~fD~I~~~~~l~~~~~~d~~~~l~~i~~~L---------kpgG~lii~~~~  143 (226)
T d1ve3a1          97 -----SFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVL---------KPSGKFIMYFTD  143 (226)
T ss_dssp             -----CSCTTCEEEEEEESCGGGCCHHHHHHHHHHHHHHE---------EEEEEEEEEEEC
T ss_pred             -----cccCcCceEEEEecchhhCChhHHHHHHHHHHHHc---------CcCcEEEEEEcC
Confidence                 34467999999999998854  6778999999999         679999887654

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.44  E-value=8.9e-14  Score=124.46  Aligned_cols=115  Identities=19%  Similarity=0.222  Sum_probs=86.0

Q ss_pred             hhhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCC--CcEEEEEeeccCCccCCCCCCCc
Q 009871           69 RYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQISPSS  146 (523)
Q Consensus        69 ~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~  146 (523)
                      ..+.+.++.+|||||||+|.++..+++.+  .+|+|+|+|+.|++.|+++.+..+  .+++++++|+.+.    +.+...
T Consensus        27 ~~l~~~~g~~VLDiGcGsG~~s~~lA~~~--~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~----~~~~~~  100 (186)
T d1l3ia_          27 CLAEPGKNDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEA----LCKIPD  100 (186)
T ss_dssp             HHHCCCTTCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHH----HTTSCC
T ss_pred             HhcCCCCCCEEEEEECCeEcccccccccc--eEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhc----ccccCC
Confidence            34566789999999999999999998874  579999999999999999875543  6899999999865    455678


Q ss_pred             eeEEEEc-------cccccceeeecceEEecCCeEEEee----CHHHHHHHHHhCCCcE
Q 009871          147 IDIVTME-------RLTGKDQKISENFYVRGDGTRAFYF----SNDFLTSLFKENGFDV  194 (523)
Q Consensus       147 fD~V~~~-------~~~~~~~~~~~~~~~~~~g~~~~~~----~~~~l~~ll~~~Gf~~  194 (523)
                      ||+|++.       .+......     .++++|......    +...+.+.+...|+..
T Consensus       101 ~D~v~~~~~~~~~~~~~~~~~~-----~LkpgG~lvi~~~~~e~~~~~~~~l~~~~~~~  154 (186)
T d1l3ia_         101 IDIAVVGGSGGELQEILRIIKD-----KLKPGGRIIVTAILLETKFEAMECLRDLGFDV  154 (186)
T ss_dssp             EEEEEESCCTTCHHHHHHHHHH-----TEEEEEEEEEEECBHHHHHHHHHHHHHTTCCC
T ss_pred             cCEEEEeCccccchHHHHHHHH-----HhCcCCEEEEEeeccccHHHHHHHHHHcCCCe
Confidence            9999991       11111111     467777765432    3345667788888864

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.43  E-value=8.4e-13  Score=121.52  Aligned_cols=152  Identities=19%  Similarity=0.151  Sum_probs=109.8

Q ss_pred             ccccchhHH-HHHHHHhc---CCCCCCCCeEEEECCCccHHHHHHHhcC-CCEEEEEcCChHHHHHHHHHHHhcCCCCCC
Q 009871          313 GLMLWESAH-LMAAVLAR---NPTIVAGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFL  387 (523)
Q Consensus       313 G~~~W~~a~-~la~~l~~---~~~~~~~~~VLElG~G~G~l~~~~a~~~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~  387 (523)
                      ..+.|+.-. -||..+..   ...+.+|.+|||||||+|..+..++..+ ...|+|+|+|+.|++.++.++..+      
T Consensus        48 e~r~w~p~rsklaA~i~~gl~~l~ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~------  121 (230)
T d1g8sa_          48 EYRIWNPNKSKLAAAIIKGLKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER------  121 (230)
T ss_dssp             EEEECCTTTCHHHHHHHTTCCCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC------
T ss_pred             eeeeECCCccHHHHHHHhhHHhCCCCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhh------
Confidence            366776544 45555554   3456789999999999998888888874 358999999999999998876553      


Q ss_pred             CceEEEeeecCCCCcchhhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCCh-
Q 009871          388 AKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDE-  466 (523)
Q Consensus       388 ~~v~~~~ldw~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~-  466 (523)
                      ..+.....+.....      ...+..+|+++....+++......++..+.++|         +|||.++++...+..+. 
T Consensus       122 ~ni~~i~~d~~~~~------~~~~~~~~v~~i~~~~~~~~~~~~~l~~~~r~L---------KpgG~~~i~~k~~~~d~~  186 (230)
T d1g8sa_         122 ENIIPILGDANKPQ------EYANIVEKVDVIYEDVAQPNQAEILIKNAKWFL---------KKGGYGMIAIKARSIDVT  186 (230)
T ss_dssp             TTEEEEECCTTCGG------GGTTTCCCEEEEEECCCSTTHHHHHHHHHHHHE---------EEEEEEEEEEEGGGTCSS
T ss_pred             cccceEEEeeccCc------ccccccceeEEeeccccchHHHHHHHHHHHHhc---------ccCceEEEEeeccccCCC
Confidence            23344444433321      223456788777767788888999999999999         67999999877764321 


Q ss_pred             -------hHHHHHHHHcCCEEEEEcC
Q 009871          467 -------PSMLSAATQCGFRLVDKWP  485 (523)
Q Consensus       467 -------~~~~~~~~~~gf~~~~~~~  485 (523)
                             .+..+.++++||++.+...
T Consensus       187 ~~~~~~~~e~~~~L~~aGF~ive~id  212 (230)
T d1g8sa_         187 KDPKEIFKEQKEILEAGGFKIVDEVD  212 (230)
T ss_dssp             SCHHHHHHHHHHHHHHHTEEEEEEEE
T ss_pred             CCHHHHHHHHHHHHHHcCCEEEEEec
Confidence                   2345667889999988754

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=99.43  E-value=9.3e-14  Score=132.78  Aligned_cols=75  Identities=13%  Similarity=0.108  Sum_probs=65.1

Q ss_pred             CCCCCeEEEECCCccccHHHHHhhCC-CCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEE
Q 009871           73 GAGRKDVLEVGCGAGNTIFPLIAAYP-DVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVT  151 (523)
Q Consensus        73 ~~~~~~iLDiGcG~G~~~~~l~~~~~-~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~  151 (523)
                      ..++.+|||||||+|..+..+++..+ +.+|+|+|+|+.|++.|+++....+.+++|.++|+.++    +++ ++||+|+
T Consensus        25 ~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~~~~----~~~-~~fD~v~   99 (281)
T d2gh1a1          25 ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEI----ELN-DKYDIAI   99 (281)
T ss_dssp             CCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSSEEEEEESCTTTC----CCS-SCEEEEE
T ss_pred             cCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccccccccccccccc----ccc-CCceEEE
Confidence            35778999999999999999998865 57899999999999999998766666899999999876    443 5799999


Q ss_pred             E
Q 009871          152 M  152 (523)
Q Consensus       152 ~  152 (523)
                      |
T Consensus       100 ~  100 (281)
T d2gh1a1         100 C  100 (281)
T ss_dssp             E
T ss_pred             E
Confidence            9

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=5.9e-14  Score=132.39  Aligned_cols=143  Identities=11%  Similarity=0.048  Sum_probs=101.2

Q ss_pred             CCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCc-----------------------
Q 009871          333 IVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAK-----------------------  389 (523)
Q Consensus       333 ~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~-----------------------  389 (523)
                      ..++.+|||||||+|.++..+++.++.+|+++|+|+.|++.|++++..+........                       
T Consensus        49 ~~~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (257)
T d2a14a1          49 GLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLR  128 (257)
T ss_dssp             SCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCHhHHHHhccccCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHh
Confidence            357889999999999888777777777899999999999999999887654321100                       


Q ss_pred             eEEEeeecCCCCcchhhhhhcCCCccEEEEccccCCC----CChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec---
Q 009871          390 LITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIP----EAILPLFATAKELTASSNKSLREDQQPAFILCHIFR---  462 (523)
Q Consensus       390 v~~~~ldw~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~----~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r---  462 (523)
                      ..+...............+...++||+|++..++.+.    +.+..+++.+.++|         +|||.++++....   
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~L---------kpGG~li~~~~~~~~~  199 (257)
T d2a14a1         129 AAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLL---------KPGGHLVTTVTLRLPS  199 (257)
T ss_dssp             HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTE---------EEEEEEEEEEESSCCE
T ss_pred             hhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhcc---------CCCcEEEEEEeccccc
Confidence            0000011111000011123456799999999888653    35678899999999         6799999876542   


Q ss_pred             -----------CCChhHHHHHHHHcCCEEEEEc
Q 009871          463 -----------QVDEPSMLSAATQCGFRLVDKW  484 (523)
Q Consensus       463 -----------~~~~~~~~~~~~~~gf~~~~~~  484 (523)
                                 ..+.+.+.+.++++||++.++.
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~l~~aGf~v~~~~  232 (257)
T d2a14a1         200 YMVGKREFSCVALEKGEVEQAVLDAGFDIEQLL  232 (257)
T ss_dssp             EEETTEEEECCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred             ceeccccccccCCCHHHHHHHHHHCCCEEEEEE
Confidence                       2356788899999999998873

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=99.43  E-value=7.3e-14  Score=126.06  Aligned_cols=121  Identities=13%  Similarity=0.080  Sum_probs=83.6

Q ss_pred             hcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC-------------CCcEEEEEeeccCCc
Q 009871           71 FSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT-------------ETRVSTFVCDLISDD  137 (523)
Q Consensus        71 ~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~-------------~~~v~~~~~d~~~~~  137 (523)
                      +..+++.+|||+|||+|+.+..|+++  +++|+|+|+|+.||+.|+++....             ...+++.++|+.++.
T Consensus        16 l~~~~~~rvLd~GCG~G~~a~~la~~--G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~   93 (201)
T d1pjza_          16 LNVVPGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALT   93 (201)
T ss_dssp             HCCCTTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSST
T ss_pred             cCCCCCCEEEEecCcCCHHHHHHHHc--CCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecccccccc
Confidence            34578999999999999999999998  788999999999999999875321             345678889887652


Q ss_pred             cCCCCCCCceeEEEE-------------------ccccccceeeecceEEe---cCCeEEEeeCHHHHHHHHHhCCCcEE
Q 009871          138 LSRQISPSSIDIVTM-------------------ERLTGKDQKISENFYVR---GDGTRAFYFSNDFLTSLFKENGFDVE  195 (523)
Q Consensus       138 ~~~~~~~~~fD~V~~-------------------~~~~~~~~~~~~~~~~~---~~g~~~~~~~~~~l~~ll~~~Gf~~~  195 (523)
                         +....+||+|++                   .+.+++++.+.-..+..   ..+...+..+.+++.+++. .+|++.
T Consensus        94 ---~~~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~~~~~~~~~~~p~~~~~~~el~~l~~-~~~~i~  169 (201)
T d1pjza_          94 ---ARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYDQALLEGPPFSVPQTWLHRVMS-GNWEVT  169 (201)
T ss_dssp             ---HHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCSSSSSSCCCCCCHHHHHHTSC-SSEEEE
T ss_pred             ---cccccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEEcccccccCCCccccCCHHHHHHHhC-CCcEEE
Confidence               234578999998                   23344444422111111   1112234458888988885 567654


Q ss_pred             EE
Q 009871          196 EL  197 (523)
Q Consensus       196 ~~  197 (523)
                      .+
T Consensus       170 ~~  171 (201)
T d1pjza_         170 KV  171 (201)
T ss_dssp             EE
T ss_pred             EE
Confidence            44

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=99.42  E-value=1.5e-13  Score=130.33  Aligned_cols=71  Identities=23%  Similarity=0.364  Sum_probs=65.7

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM  152 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~  152 (523)
                      .++.+|||||||+|.++..|++.+|+.+|+|+|+|+.|++.|+++.    .++.+.++|+.++    |+++++||+|++
T Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~----~~~~~~~~d~~~l----~~~~~sfD~v~~  153 (268)
T d1p91a_          83 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY----PQVTFCVASSHRL----PFSDTSMDAIIR  153 (268)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC----TTSEEEECCTTSC----SBCTTCEEEEEE
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhccc----ccccceeeehhhc----cCCCCCEEEEee
Confidence            5788999999999999999999999999999999999999998864    5689999999988    788999999998

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=99.42  E-value=1.1e-13  Score=129.37  Aligned_cols=68  Identities=15%  Similarity=0.095  Sum_probs=59.1

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM  152 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~  152 (523)
                      .++.+|||||||+|.++..|++.  +++|+|||+|+.|++.|+++..     ..++++|+.++    ++++++||+|+|
T Consensus        41 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~l~~a~~~~~-----~~~~~~~~~~l----~~~~~~fD~ii~  108 (246)
T d2avna1          41 KNPCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREKGV-----KNVVEAKAEDL----PFPSGAFEAVLA  108 (246)
T ss_dssp             CSCCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHTC-----SCEEECCTTSC----CSCTTCEEEEEE
T ss_pred             CCCCEEEEECCCCchhccccccc--ceEEEEeecccccccccccccc-----ccccccccccc----ccccccccceee
Confidence            36779999999999999999987  6789999999999999998742     23678899887    778899999998

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.41  E-value=1.7e-13  Score=118.13  Aligned_cols=109  Identities=17%  Similarity=0.232  Sum_probs=86.4

Q ss_pred             CCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCC
Q 009871          334 VAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG  413 (523)
Q Consensus       334 ~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~  413 (523)
                      .+|++|||||||||.+++.++++|+++|+++|.++.+++.+++|++.++..   .++.+...|+...      ......+
T Consensus        13 ~~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~~n~~~~~~~---~~~~ii~~D~~~~------l~~~~~~   83 (152)
T d2esra1          13 FNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAE---NRFTLLKMEAERA------IDCLTGR   83 (152)
T ss_dssp             CCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCG---GGEEEECSCHHHH------HHHBCSC
T ss_pred             CCCCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhhhhhhhcccc---cchhhhccccccc------ccccccc
Confidence            589999999999999999999999999999999999999999999998875   5677665554321      1234679


Q ss_pred             ccEEEEccccCCCCChHHHHHHHHH--HhhccCCCCCCCCCcEEEEEEee
Q 009871          414 FEVILGTDVSYIPEAILPLFATAKE--LTASSNKSLREDQQPAFILCHIF  461 (523)
Q Consensus       414 fD~Ii~~d~~y~~~~~~~l~~~l~~--ll~~~~~~~~~~~~g~~~l~~~~  461 (523)
                      ||+|+. |..|........+..+..  +|         +++|.+++.+..
T Consensus        84 fDiIf~-DPPy~~~~~~~~l~~i~~~~~L---------~~~g~iiiE~~~  123 (152)
T d2esra1          84 FDLVFL-DPPYAKETIVATIEALAAKNLL---------SEQVMVVCETDK  123 (152)
T ss_dssp             EEEEEE-CCSSHHHHHHHHHHHHHHTTCE---------EEEEEEEEEEET
T ss_pred             cceeEe-chhhccchHHHHHHHHHHCCCc---------CCCeEEEEEeCC
Confidence            999999 777887777777777754  46         468888776543

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=99.39  E-value=9.8e-12  Score=119.74  Aligned_cols=174  Identities=14%  Similarity=0.082  Sum_probs=115.8

Q ss_pred             EEEEcCceEEEEEecccccccCCCcccccchhHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCC
Q 009871          288 EVNLRDRSFKIEVLSKEYQHTCRSTGLMLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGD  367 (523)
Q Consensus       288 ~~~~~~~~~~i~~~~~~~~~~~~~~G~~~W~~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~  367 (523)
                      .+..+|..+.|....      .-.||+.+ +-. -.-+++...  ..+|++|||++||+|+++..+++.|+.+|+++|+|
T Consensus       107 ~v~E~Gl~f~vdl~~------g~ktGlfl-DqR-~~r~~l~~~--~~~g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s  176 (317)
T d2b78a2         107 LILENGISYNVFLND------GLMTGIFL-DQR-QVRNELING--SAAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLA  176 (317)
T ss_dssp             EEEETTEEEEECSSS------SSCCSSCG-GGH-HHHHHHHHT--TTBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESC
T ss_pred             eeeeCCEEEEEEccc------ccccCCcH-HHH-HHHHHHHHH--hhCCCceeecCCCCcHHHHHHHhCCCceEEEecCC
Confidence            355577777766322      23556432 111 111223222  23789999999999999988888888899999999


Q ss_pred             hHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCccEEEEccccCCC---------CChHHHHHHHHH
Q 009871          368 SIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIP---------EAILPLFATAKE  438 (523)
Q Consensus       368 ~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~---------~~~~~l~~~l~~  438 (523)
                      +.+++.+++|++.|++..  .++.+...|-.+  .+..+ .....+||+||....-+..         ..+..|++.+.+
T Consensus       177 ~~a~~~a~~N~~~n~l~~--~~~~~i~~d~~~--~l~~~-~~~~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~  251 (317)
T d2b78a2         177 KRSRALSLAHFEANHLDM--ANHQLVVMDVFD--YFKYA-RRHHLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLE  251 (317)
T ss_dssp             TTHHHHHHHHHHHTTCCC--TTEEEEESCHHH--HHHHH-HHTTCCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcccC--cceEEEEccHHH--HHHHH-HhhcCCCCEEEEcChhhccchhHHHHHHHHHHHHHHHHHH
Confidence            999999999999999853  345555433211  11111 1234689999986554431         135678888888


Q ss_pred             HhhccCCCCCCCCCcEEEEEEeecCCChhHHHHHH----HHcCCEEEEEcC
Q 009871          439 LTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAA----TQCGFRLVDKWP  485 (523)
Q Consensus       439 ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~~~~~----~~~gf~~~~~~~  485 (523)
                      +|         +|||.+++|...+..+.+.|...+    .+.|..+..+..
T Consensus       252 ll---------~pgG~l~~~scs~~~~~~~f~~~v~~a~~~~~~~~~~~~~  293 (317)
T d2b78a2         252 IL---------SENGLIIASTNAANMTVSQFKKQIEKGFGKQKHTYLDLQQ  293 (317)
T ss_dssp             TE---------EEEEEEEEEECCTTSCHHHHHHHHHHHHTTCCCEEEEEEC
T ss_pred             Hc---------CCCCEEEEEeCCccCCHHHHHHHHHHHHHHcCCeEEEecc
Confidence            88         679999999988888877765544    446777766654

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.39  E-value=4.9e-12  Score=118.21  Aligned_cols=101  Identities=17%  Similarity=0.189  Sum_probs=76.6

Q ss_pred             CCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCC
Q 009871          334 VAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG  413 (523)
Q Consensus       334 ~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~  413 (523)
                      .++++|||||||+|.++..+++++. +|+|+|+|+.|++.|++++..++.     ++.+...|+.+..       + +++
T Consensus        36 ~~~~~vLDiGCG~G~~~~~l~~~g~-~v~GvD~S~~ml~~A~~~~~~~~~-----~v~~~~~d~~~~~-------~-~~~  101 (246)
T d1y8ca_          36 LVFDDYLDLACGTGNLTENLCPKFK-NTWAVDLSQEMLSEAENKFRSQGL-----KPRLACQDISNLN-------I-NRK  101 (246)
T ss_dssp             CCTTEEEEETCTTSTTHHHHGGGSS-EEEEECSCHHHHHHHHHHHHHTTC-----CCEEECCCGGGCC-------C-SCC
T ss_pred             CCCCeEEEEeCcCCHHHHHHHHhCC-ccEeeccchhhhhhccccccccCc-----cceeeccchhhhc-------c-ccc
Confidence            3568999999999999999988875 799999999999999998877654     3555555554321       1 468


Q ss_pred             ccEEEEc-cccCC---CCChHHHHHHHHHHhhccCCCCCCCCCcEEEE
Q 009871          414 FEVILGT-DVSYI---PEAILPLFATAKELTASSNKSLREDQQPAFIL  457 (523)
Q Consensus       414 fD~Ii~~-d~~y~---~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l  457 (523)
                      ||+|++. .++++   .+....+++.+.++|         +|||.+++
T Consensus       102 fD~i~~~~~~~~~~~~~~~~~~~l~~~~~~L---------kpgG~~i~  140 (246)
T d1y8ca_         102 FDLITCCLDSTNYIIDSDDLKKYFKAVSNHL---------KEGGVFIF  140 (246)
T ss_dssp             EEEEEECTTGGGGCCSHHHHHHHHHHHHTTE---------EEEEEEEE
T ss_pred             ccccceeeeeeeccCCHHHHHHHHHHHHHhC---------CCCeEEEE
Confidence            9999975 45544   345667889999999         56787764

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.39  E-value=4.6e-13  Score=123.31  Aligned_cols=120  Identities=13%  Similarity=0.184  Sum_probs=86.8

Q ss_pred             hhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeE
Q 009871           70 YFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDI  149 (523)
Q Consensus        70 ~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~  149 (523)
                      .++..++.+|||+|||+|..+..+++..|+..|+|||+|+.|++.|++++.. ..++..+.+|.....   ++.+..+|+
T Consensus        69 ~l~ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~-~~ni~~i~~d~~~~~---~~~~~~~~v  144 (230)
T d1g8sa_          69 VMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAE-RENIIPILGDANKPQ---EYANIVEKV  144 (230)
T ss_dssp             CCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTT-CTTEEEEECCTTCGG---GGTTTCCCE
T ss_pred             hCCCCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhh-hcccceEEEeeccCc---cccccccee
Confidence            4566889999999999999999999998889999999999999999987643 367888888887543   334556666


Q ss_pred             EEE----------ccccccceeeecceEEecCCeEEEe-------------eCHHHHHHHHHhCCCcEEEEE
Q 009871          150 VTM----------ERLTGKDQKISENFYVRGDGTRAFY-------------FSNDFLTSLFKENGFDVEELG  198 (523)
Q Consensus       150 V~~----------~~~~~~~~~~~~~~~~~~~g~~~~~-------------~~~~~l~~ll~~~Gf~~~~~~  198 (523)
                      +++          ..++....     .+++++|.+...             ...++..+.|+++||++++..
T Consensus       145 ~~i~~~~~~~~~~~~~l~~~~-----r~LKpgG~~~i~~k~~~~d~~~~~~~~~~e~~~~L~~aGF~ive~i  211 (230)
T d1g8sa_         145 DVIYEDVAQPNQAEILIKNAK-----WFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKEILEAGGFKIVDEV  211 (230)
T ss_dssp             EEEEECCCSTTHHHHHHHHHH-----HHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHHHHHHHTEEEEEEE
T ss_pred             EEeeccccchHHHHHHHHHHH-----HhcccCceEEEEeeccccCCCCCHHHHHHHHHHHHHHcCCEEEEEe
Confidence            555          11111111     156666665432             124667888999999987653

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=99.38  E-value=1.5e-12  Score=122.25  Aligned_cols=132  Identities=10%  Similarity=0.042  Sum_probs=102.3

Q ss_pred             CCCCCCeEEEECCCccHHHHHHHhcCC-CEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhc
Q 009871          332 TIVAGKKVLELGCGCGGICSMVAAGSA-DLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEEN  410 (523)
Q Consensus       332 ~~~~~~~VLElG~G~G~l~~~~a~~~~-~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~  410 (523)
                      +..+.++|||||||+|.++..++++.+ .+++++|+ +.+++.+++++...++.   .++.+...|..+.         .
T Consensus        77 d~~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~---~rv~~~~~D~~~~---------~  143 (253)
T d1tw3a2          77 DWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLS---DRVDVVEGDFFEP---------L  143 (253)
T ss_dssp             CCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCT---TTEEEEECCTTSC---------C
T ss_pred             CCccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhhcc---cchhhccccchhh---------c
Confidence            445668999999999999888888754 58999998 77999999999987765   5778877665432         1


Q ss_pred             CCCccEEEEccccCCCC--ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecC------------------------C
Q 009871          411 NEGFEVILGTDVSYIPE--AILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ------------------------V  464 (523)
Q Consensus       411 ~~~fD~Ii~~d~~y~~~--~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~------------------------~  464 (523)
                      +.+||+|+++.++++..  ....+++.+.+.|         +|||.++++.....                        .
T Consensus       144 ~~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L---------kPGG~l~i~e~~~~~~~~~~~~~~~~dl~~~~~~~g~~r  214 (253)
T d1tw3a2         144 PRKADAIILSFVLLNWPDHDAVRILTRCAEAL---------EPGGRILIHERDDLHENSFNEQFTELDLRMLVFLGGALR  214 (253)
T ss_dssp             SSCEEEEEEESCGGGSCHHHHHHHHHHHHHTE---------EEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCCCC
T ss_pred             ccchhheeeccccccCCchhhHHHHHHHHHhc---------CCCcEEEEEeccCCCCCcchhHHHHhhHHHHhhCCCcCC
Confidence            35799999999998754  3457899999999         67999998764311                        1


Q ss_pred             ChhHHHHHHHHcCCEEEEEcC
Q 009871          465 DEPSMLSAATQCGFRLVDKWP  485 (523)
Q Consensus       465 ~~~~~~~~~~~~gf~~~~~~~  485 (523)
                      +.+++.+.++++||++.++..
T Consensus       215 t~~e~~~ll~~AGf~~~~v~~  235 (253)
T d1tw3a2         215 TREKWDGLAASAGLVVEEVRQ  235 (253)
T ss_dssp             BHHHHHHHHHHTTEEEEEEEE
T ss_pred             CHHHHHHHHHHCCCeEEEEEE
Confidence            234566788999999988765

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=99.38  E-value=1.4e-12  Score=118.60  Aligned_cols=119  Identities=11%  Similarity=0.171  Sum_probs=90.8

Q ss_pred             CCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCc
Q 009871          335 AGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGF  414 (523)
Q Consensus       335 ~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~f  414 (523)
                      ++.+|||||||+|.++..+     .+++++|+|+.|++.++++           .+.+...+-.+   +    ++++++|
T Consensus        36 ~~~~vLDiGcG~G~~~~~~-----~~~~giD~s~~~~~~a~~~-----------~~~~~~~d~~~---l----~~~~~~f   92 (208)
T d1vlma_          36 PEGRGVEIGVGTGRFAVPL-----KIKIGVEPSERMAEIARKR-----------GVFVLKGTAEN---L----PLKDESF   92 (208)
T ss_dssp             CSSCEEEETCTTSTTHHHH-----TCCEEEESCHHHHHHHHHT-----------TCEEEECBTTB---C----CSCTTCE
T ss_pred             CCCeEEEECCCCccccccc-----ceEEEEeCChhhccccccc-----------ccccccccccc---c----ccccccc
Confidence            4568999999999766554     2478999999999998763           23343333222   1    2346799


Q ss_pred             cEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecC----------------------CChhHHHHH
Q 009871          415 EVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ----------------------VDEPSMLSA  472 (523)
Q Consensus       415 D~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~----------------------~~~~~~~~~  472 (523)
                      |+|++..++++..+...+++.+.++|         +|||.+++......                      .+..++.+.
T Consensus        93 D~I~~~~~l~h~~d~~~~l~~~~~~L---------~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~  163 (208)
T d1vlma_          93 DFALMVTTICFVDDPERALKEAYRIL---------KKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDL  163 (208)
T ss_dssp             EEEEEESCGGGSSCHHHHHHHHHHHE---------EEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHH
T ss_pred             cccccccccccccccccchhhhhhcC---------CCCceEEEEecCCcchhHHhhhhccccccccccccCCCHHHHHHH
Confidence            99999999999999999999999999         67999988775411                      234668888


Q ss_pred             HHHcCCEEEEEcC
Q 009871          473 ATQCGFRLVDKWP  485 (523)
Q Consensus       473 ~~~~gf~~~~~~~  485 (523)
                      ++++||+..++..
T Consensus       164 l~~~Gf~~i~v~~  176 (208)
T d1vlma_         164 MRKAGFEEFKVVQ  176 (208)
T ss_dssp             HHHTTCEEEEEEE
T ss_pred             HHHcCCeEEEEEE
Confidence            9999999887754

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.38  E-value=1.4e-12  Score=117.86  Aligned_cols=105  Identities=23%  Similarity=0.238  Sum_probs=84.2

Q ss_pred             CCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCc
Q 009871          335 AGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGF  414 (523)
Q Consensus       335 ~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~f  414 (523)
                      ++.+|||||||+|..+..+++++. +|+++|+|+.|++.+++++...+..    .+.+...|..+..        .+++|
T Consensus        30 ~~grvLDiGcG~G~~~~~la~~g~-~v~gvD~s~~~l~~a~~~~~~~~~~----~~~~~~~d~~~~~--------~~~~f   96 (198)
T d2i6ga1          30 APGRTLDLGCGNGRNSLYLAANGY-DVTAWDKNPASMANLERIKAAEGLD----NLQTDLVDLNTLT--------FDGEY   96 (198)
T ss_dssp             CSCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCT----TEEEEECCTTTCC--------CCCCE
T ss_pred             CCCcEEEECCCCCHHHHHHHHHhh-hhccccCcHHHHHHHHHHhhhcccc----chhhhheeccccc--------ccccc
Confidence            455999999999999999988865 7999999999999999998886663    4666555554331        25689


Q ss_pred             cEEEEccccCCC--CChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee
Q 009871          415 EVILGTDVSYIP--EAILPLFATAKELTASSNKSLREDQQPAFILCHIF  461 (523)
Q Consensus       415 D~Ii~~d~~y~~--~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~  461 (523)
                      |+|++..++++.  .....+++.+.++|         +|+|.+++....
T Consensus        97 D~I~~~~~~~~~~~~~~~~~l~~~~~~L---------~pgG~~~~~~~~  136 (198)
T d2i6ga1          97 DFILSTVVMMFLEAQTIPGLIANMQRCT---------KPGGYNLIVAAM  136 (198)
T ss_dssp             EEEEEESCGGGSCTTHHHHHHHHHHHTE---------EEEEEEEEEEEB
T ss_pred             cEEEEeeeeecCCHHHHHHHHHHHHHHc---------CCCcEEEEEEec
Confidence            999999999874  45678999999999         679988876544

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=99.37  E-value=1.6e-12  Score=122.02  Aligned_cols=122  Identities=17%  Similarity=0.221  Sum_probs=88.9

Q ss_pred             HHhhhhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC--CCcEEEEEeeccCCccCCCCC
Q 009871           66 EWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISDDLSRQIS  143 (523)
Q Consensus        66 ~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~~~~~~~  143 (523)
                      .+.+.++.....+|||||||+|..+..+++++|+.+++++|+ +.|++.++++....  ..+++++.+|+.+.     . 
T Consensus        71 ~~~~~~d~~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~-----~-  143 (253)
T d1tw3a2          71 APAAAYDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEP-----L-  143 (253)
T ss_dssp             HHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSC-----C-
T ss_pred             HHHhhcCCccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhhcccchhhccccchhh-----c-
Confidence            333445556778999999999999999999999999999998 67899998876432  46899999998642     2 


Q ss_pred             CCceeEEEEc------------cccccceeeecceEEecCCeEEE-----------------------------eeCHHH
Q 009871          144 PSSIDIVTME------------RLTGKDQKISENFYVRGDGTRAF-----------------------------YFSNDF  182 (523)
Q Consensus       144 ~~~fD~V~~~------------~~~~~~~~~~~~~~~~~~g~~~~-----------------------------~~~~~~  182 (523)
                      +.+||+|++.            ++++...+     .++|+|.++.                             .+|.++
T Consensus       144 ~~~~D~v~~~~vlh~~~d~~~~~~L~~~~~-----~LkPGG~l~i~e~~~~~~~~~~~~~~~~dl~~~~~~~g~~rt~~e  218 (253)
T d1tw3a2         144 PRKADAIILSFVLLNWPDHDAVRILTRCAE-----ALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLGGALRTREK  218 (253)
T ss_dssp             SSCEEEEEEESCGGGSCHHHHHHHHHHHHH-----TEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCCCCBHHH
T ss_pred             ccchhheeeccccccCCchhhHHHHHHHHH-----hcCCCcEEEEEeccCCCCCcchhHHHHhhHHHHhhCCCcCCCHHH
Confidence            3579999981            11111111     3444444332                             137899


Q ss_pred             HHHHHHhCCCcEEEEEe
Q 009871          183 LTSLFKENGFDVEELGL  199 (523)
Q Consensus       183 l~~ll~~~Gf~~~~~~~  199 (523)
                      +.++|+++||.++++..
T Consensus       219 ~~~ll~~AGf~~~~v~~  235 (253)
T d1tw3a2         219 WDGLAASAGLVVEEVRQ  235 (253)
T ss_dssp             HHHHHHHTTEEEEEEEE
T ss_pred             HHHHHHHCCCeEEEEEE
Confidence            99999999999887754

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=99.37  E-value=6.5e-13  Score=124.79  Aligned_cols=109  Identities=17%  Similarity=0.130  Sum_probs=84.9

Q ss_pred             CCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCC
Q 009871          334 VAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG  413 (523)
Q Consensus       334 ~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~  413 (523)
                      .++++|||||||+|.....++..+..+|+|+|+|+.|++.|+.+...++..   .++.+...|......      ....+
T Consensus        23 ~~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~~~---~~v~f~~~D~~~~~~------~~~~~   93 (252)
T d1ri5a_          23 KRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRR---FKVFFRAQDSYGRHM------DLGKE   93 (252)
T ss_dssp             CTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCS---SEEEEEESCTTTSCC------CCSSC
T ss_pred             CCcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcCCC---cceEEEEcchhhhcc------ccccc
Confidence            378899999999998888888888889999999999999999888765543   456666655433211      12458


Q ss_pred             ccEEEEccccCCC----CChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEe
Q 009871          414 FEVILGTDVSYIP----EAILPLFATAKELTASSNKSLREDQQPAFILCHI  460 (523)
Q Consensus       414 fD~Ii~~d~~y~~----~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~  460 (523)
                      ||+|++..++++.    +.+..+++.+.++|         +|||.++++..
T Consensus        94 fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~L---------k~gG~~i~~~~  135 (252)
T d1ri5a_          94 FDVISSQFSFHYAFSTSESLDIAQRNIARHL---------RPGGYFIMTVP  135 (252)
T ss_dssp             EEEEEEESCGGGGGSSHHHHHHHHHHHHHTE---------EEEEEEEEEEE
T ss_pred             ceEEEEcceeeecCCCHHHHHHHHHHHhcee---------CCCCEEEEEec
Confidence            9999999888763    35678899999999         67999988643

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=99.36  E-value=6.7e-13  Score=123.91  Aligned_cols=110  Identities=18%  Similarity=0.159  Sum_probs=82.3

Q ss_pred             HHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCc
Q 009871          323 MAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDH  402 (523)
Q Consensus       323 la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~  402 (523)
                      +..++..+.  .++.+|||+|||+|.++..++..+. +|+|+|+|+.|++.|++|...+          +...+.   +.
T Consensus        32 ~~~~~~~~~--~~~~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~l~~a~~~~~~~----------~~~~~~---~~   95 (246)
T d2avna1          32 IGSFLEEYL--KNPCRVLDLGGGTGKWSLFLQERGF-EVVLVDPSKEMLEVAREKGVKN----------VVEAKA---ED   95 (246)
T ss_dssp             HHHHHHHHC--CSCCEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHHHHHTCSC----------EEECCT---TS
T ss_pred             HHHHHHHhc--CCCCEEEEECCCCchhcccccccce-EEEEeecccccccccccccccc----------cccccc---cc
Confidence            344444433  3677999999999999998888764 7999999999999998763221          112222   22


Q ss_pred             chhhhhhcCCCccEEEEc-cccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee
Q 009871          403 IEAIKEENNEGFEVILGT-DVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIF  461 (523)
Q Consensus       403 ~~~~~~~~~~~fD~Ii~~-d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~  461 (523)
                      +    ++++++||+|++. +++++..+...+++.+.++|         +|||.+++....
T Consensus        96 l----~~~~~~fD~ii~~~~~~~~~~d~~~~l~~i~r~L---------k~gG~~ii~~~~  142 (246)
T d2avna1          96 L----PFPSGAFEAVLALGDVLSYVENKDKAFSEIRRVL---------VPDGLLIATVDN  142 (246)
T ss_dssp             C----CSCTTCEEEEEECSSHHHHCSCHHHHHHHHHHHE---------EEEEEEEEEEEB
T ss_pred             c----ccccccccceeeecchhhhhhhHHHHHHHHHhhc---------CcCcEEEEEECC
Confidence            2    3456799999974 78888889999999999999         679999887653

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=99.36  E-value=1.4e-12  Score=121.06  Aligned_cols=136  Identities=11%  Similarity=0.151  Sum_probs=98.0

Q ss_pred             HHHHhcCCCCCCCCeEEEECCCccHHHHHHHhc-C-CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCC
Q 009871          324 AAVLARNPTIVAGKKVLELGCGCGGICSMVAAG-S-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRD  401 (523)
Q Consensus       324 a~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~-~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~  401 (523)
                      +.++....++.+|.+|||+|||+|.++..+|.. + ..+|+++|.++++++.|++|++.+...   .++.+...|..+. 
T Consensus        74 ~~~Ii~~l~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~---~nv~~~~~Di~~~-  149 (250)
T d1yb2a1          74 ASYIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDI---GNVRTSRSDIADF-  149 (250)
T ss_dssp             -------CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCC---TTEEEECSCTTTC-
T ss_pred             HHHHHHHcCCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCC---CceEEEEeeeecc-
Confidence            344555667889999999999999988888875 3 459999999999999999999987553   5677776665542 


Q ss_pred             cchhhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhHHHHHHHHcCCEEE
Q 009871          402 HIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLV  481 (523)
Q Consensus       402 ~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~~~~~~~~gf~~~  481 (523)
                             +++..||.|+. |    .......++.+.++|         +|||.+++..+. -.....+.+.+++.||...
T Consensus       150 -------~~~~~fD~V~l-d----~p~p~~~l~~~~~~L---------KpGG~lv~~~P~-i~Qv~~~~~~l~~~gf~~i  207 (250)
T d1yb2a1         150 -------ISDQMYDAVIA-D----IPDPWNHVQKIASMM---------KPGSVATFYLPN-FDQSEKTVLSLSASGMHHL  207 (250)
T ss_dssp             -------CCSCCEEEEEE-C----CSCGGGSHHHHHHTE---------EEEEEEEEEESS-HHHHHHHHHHSGGGTEEEE
T ss_pred             -------cccceeeeeee-c----CCchHHHHHHHHHhc---------CCCceEEEEeCC-cChHHHHHHHHHHCCCcee
Confidence                   23568999986 2    345567899999999         678888654332 1223457777888999876


Q ss_pred             EEcC
Q 009871          482 DKWP  485 (523)
Q Consensus       482 ~~~~  485 (523)
                      ++++
T Consensus       208 ~~~E  211 (250)
T d1yb2a1         208 ETVE  211 (250)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            6655

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.36  E-value=3.6e-12  Score=123.71  Aligned_cols=135  Identities=17%  Similarity=0.203  Sum_probs=98.0

Q ss_pred             CCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCC
Q 009871          334 VAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG  413 (523)
Q Consensus       334 ~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~  413 (523)
                      .+|++|||+|||+|+++..+++.|+.+|+++|+|+.+++.+++|+..|++.   .++.+...|..+.  +..+ .....+
T Consensus       144 ~~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~~N~~~ngl~---~~~~~~~~d~~~~--~~~~-~~~~~~  217 (324)
T d2as0a2         144 QPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVE---DRMKFIVGSAFEE--MEKL-QKKGEK  217 (324)
T ss_dssp             CTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCG---GGEEEEESCHHHH--HHHH-HHTTCC
T ss_pred             CCCCeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHHHHHHHcCCC---ccceeeechhhhh--hHHH-HhccCC
Confidence            368999999999999999888888889999999999999999999999986   4555554432211  1111 123568


Q ss_pred             ccEEEEccccCCCC---------ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhHHHHHH----HHcCCEE
Q 009871          414 FEVILGTDVSYIPE---------AILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAA----TQCGFRL  480 (523)
Q Consensus       414 fD~Ii~~d~~y~~~---------~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~~~~~----~~~gf~~  480 (523)
                      ||+|+.....+...         .+..++..+.++|         +|||.+++|...+..+.+.|.+.+    .+.|-.+
T Consensus       218 fD~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll---------~pGG~lv~~s~s~~~~~~~f~~~v~~a~~~~gr~~  288 (324)
T d2as0a2         218 FDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLV---------KDGGILVTCSCSQHVDLQMFKDMIIAAGAKAGKFL  288 (324)
T ss_dssp             EEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTE---------EEEEEEEEEECCTTSCHHHHHHHHHHHHHHTTEEE
T ss_pred             CCchhcCCccccCCHHHHHHHHHHHHHHHHHHHHHc---------CCCcEEEEEeCCccCCHHHHHHHHHHHHHHcCCeE
Confidence            99999854433321         2455666677777         679999999988888877776654    4566555


Q ss_pred             EEE
Q 009871          481 VDK  483 (523)
Q Consensus       481 ~~~  483 (523)
                      ..+
T Consensus       289 ~~~  291 (324)
T d2as0a2         289 KML  291 (324)
T ss_dssp             EES
T ss_pred             EEe
Confidence            544

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.35  E-value=1.7e-12  Score=121.59  Aligned_cols=102  Identities=19%  Similarity=0.128  Sum_probs=79.2

Q ss_pred             CCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCC
Q 009871          334 VAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG  413 (523)
Q Consensus       334 ~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~  413 (523)
                      .++++|||||||+|.++..+++.+. +|+++|+|+.|++.|++++..++.     ++.+...|+.+.       ++ +++
T Consensus        40 ~~~~~iLDiGcGtG~~~~~l~~~~~-~v~gvD~s~~mi~~a~~~~~~~~~-----~i~~~~~d~~~l-------~~-~~~  105 (251)
T d1wzna1          40 REVRRVLDLACGTGIPTLELAERGY-EVVGLDLHEEMLRVARRKAKERNL-----KIEFLQGDVLEI-------AF-KNE  105 (251)
T ss_dssp             SCCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC-----CCEEEESCGGGC-------CC-CSC
T ss_pred             CCCCEEEEeCCCCCccchhhcccce-EEEEEeeccccccccccccccccc-----cchheehhhhhc-------cc-ccc
Confidence            4667999999999988888888875 799999999999999999887654     355555554332       12 358


Q ss_pred             ccEEEEc-cccCCC--CChHHHHHHHHHHhhccCCCCCCCCCcEEEEE
Q 009871          414 FEVILGT-DVSYIP--EAILPLFATAKELTASSNKSLREDQQPAFILC  458 (523)
Q Consensus       414 fD~Ii~~-d~~y~~--~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~  458 (523)
                      ||+|++. .++++.  +....+++.+.++|         +|||.+++.
T Consensus       106 fD~I~~~~~~~~~~~~~~~~~~L~~~~~~L---------kpgG~lii~  144 (251)
T d1wzna1         106 FDAVTMFFSTIMYFDEEDLRKLFSKVAEAL---------KPGGVFITD  144 (251)
T ss_dssp             EEEEEECSSGGGGSCHHHHHHHHHHHHHHE---------EEEEEEEEE
T ss_pred             cchHhhhhhhhhcCChHHHHHHHHHHHHHc---------CCCcEEEEE
Confidence            9999986 555553  35668899999999         679988874

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=99.35  E-value=1.8e-11  Score=118.30  Aligned_cols=170  Identities=16%  Similarity=0.151  Sum_probs=111.9

Q ss_pred             eEEEEEEcCceEEEEEecccccccCCCcccccchhHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEE
Q 009871          285 EMIEVNLRDRSFKIEVLSKEYQHTCRSTGLMLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVAT  364 (523)
Q Consensus       285 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~G~~~W~~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~  364 (523)
                      +.+.+...|..+.+.....      -.||..+=.-  . .+.+...   .+|++|||+|||+|+++..+| .++++|+++
T Consensus       107 ~~~~v~E~G~~f~v~l~~~------~~tG~flDqr--~-~r~~~~~---~~g~rVLDl~~gtG~~s~~~a-~g~~~V~~v  173 (318)
T d1wxxa2         107 ERVQVQEGRVRYLVDLRAG------QKTGAYLDQR--E-NRLYMER---FRGERALDVFSYAGGFALHLA-LGFREVVAV  173 (318)
T ss_dssp             SEEEEEETTEEEEEECSTT------SCCCCCGGGH--H-HHHHGGG---CCEEEEEEETCTTTHHHHHHH-HHEEEEEEE
T ss_pred             ceEEEEECCEEEEEechhc------cccccchhhh--h-hHHHHHH---hCCCeeeccCCCCcHHHHHHH-hcCCcEEee
Confidence            3566777888888774321      3455432211  1 1222222   378999999999999987765 567799999


Q ss_pred             cCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCccEEEEccccCCC--C-------ChHHHHHH
Q 009871          365 DGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIP--E-------AILPLFAT  435 (523)
Q Consensus       365 D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~--~-------~~~~l~~~  435 (523)
                      |+|+.+++.+++|++.|++.    .+.+...|..+.  ...+ .....+||+|+.....+..  .       .+..++..
T Consensus       174 D~s~~al~~a~~n~~~ngl~----~~~~i~~d~~~~--~~~~-~~~~~~fD~Vi~DpP~~~~~~~~~~~~~~~~~~l~~~  246 (318)
T d1wxxa2         174 DSSAEALRRAEENARLNGLG----NVRVLEANAFDL--LRRL-EKEGERFDLVVLDPPAFAKGKKDVERAYRAYKEVNLR  246 (318)
T ss_dssp             ESCHHHHHHHHHHHHHTTCT----TEEEEESCHHHH--HHHH-HHTTCCEEEEEECCCCSCCSTTSHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHcCCC----CcceeeccHHHH--hhhh-HhhhcCCCEEEEcCCccccchHHHHHHHHHHHHHHHH
Confidence            99999999999999999984    455554443221  1111 1235689999986544432  2       23456777


Q ss_pred             HHHHhhccCCCCCCCCCcEEEEEEeecCCChhHHHHH----HHHcCCEEEEE
Q 009871          436 AKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSA----ATQCGFRLVDK  483 (523)
Q Consensus       436 l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~~~~----~~~~gf~~~~~  483 (523)
                      +.++|         +|||.++++......+...|.+.    +...|-++..+
T Consensus       247 a~~lL---------kpGG~Lv~~scs~~~~~~~f~~~v~~a~~~a~~~~~~~  289 (318)
T d1wxxa2         247 AIKLL---------KEGGILATASCSHHMTEPLFYAMVAEAAQDAHRLLRVV  289 (318)
T ss_dssp             HHHTE---------EEEEEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             HHHHc---------CCCCEEEEEeCCcccCHHHHHHHHHHHHHHcCCCEEEE
Confidence            77788         67999999988877777666554    34566554443

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=99.34  E-value=8.4e-13  Score=124.10  Aligned_cols=119  Identities=17%  Similarity=0.237  Sum_probs=89.5

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCC-CcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQISPSSIDIVTM  152 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~V~~  152 (523)
                      ..+.+|||+|||+|..+..++...|+++|+|+|+|+.+++.|++|+.... .+++++++|+.+     ++++++||+|+|
T Consensus       107 ~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~-----~~~~~~fDlIvs  181 (274)
T d2b3ta1         107 EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFS-----ALAGQQFAMIVS  181 (274)
T ss_dssp             SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTG-----GGTTCCEEEEEE
T ss_pred             ccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCcccceeeeccccc-----ccCCCceeEEEe
Confidence            46678999999999999999999999999999999999999999886443 479999999874     355679999999


Q ss_pred             -cccc--------------ccceeee-------------c--ceEEecCCeEEEee---CHHHHHHHHHhCCCcEEEE
Q 009871          153 -ERLT--------------GKDQKIS-------------E--NFYVRGDGTRAFYF---SNDFLTSLFKENGFDVEEL  197 (523)
Q Consensus       153 -~~~~--------------~~~~~~~-------------~--~~~~~~~g~~~~~~---~~~~l~~ll~~~Gf~~~~~  197 (523)
                       ..+.              .+...+.             .  ..+++++|.+.+-.   ..+.+.+++++.||..+++
T Consensus       182 NPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lEig~~q~~~v~~~l~~~gf~~i~~  259 (274)
T d2b3ta1         182 NPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGWQQGEAVRQAFILAGYHDVET  259 (274)
T ss_dssp             CCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCSSCHHHHHHHHHHTTCTTCCE
T ss_pred             cchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEEECchHHHHHHHHHHHCCCCeEEE
Confidence             0000              0000000             0  12467778776633   4678999999999985443

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.33  E-value=2.5e-12  Score=124.79  Aligned_cols=112  Identities=18%  Similarity=0.221  Sum_probs=87.7

Q ss_pred             HHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcch
Q 009871          325 AVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIE  404 (523)
Q Consensus       325 ~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~  404 (523)
                      +.+..+...++|++|||||||+|.++.++|+.|+.+|+++|.++. ...+++++..|+..   .++.+...+..+.    
T Consensus        23 ~ai~~~~~~~~~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~-~~~a~~~~~~n~~~---~~v~~~~~~~~~~----   94 (316)
T d1oria_          23 NSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSI-SDYAVKIVKANKLD---HVVTIIKGKVEEV----   94 (316)
T ss_dssp             HHHHTCHHHHTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTT-HHHHHHHHHHTTCT---TTEEEEESCTTTC----
T ss_pred             HHHHhccccCCcCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHH-HhhhhhHHHHhCCc---cccceEeccHHHc----
Confidence            445556566789999999999998888888888889999999875 57778889998886   5677766555443    


Q ss_pred             hhhhhcCCCccEEEEccc---cCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEE
Q 009871          405 AIKEENNEGFEVILGTDV---SYIPEAILPLFATAKELTASSNKSLREDQQPAFI  456 (523)
Q Consensus       405 ~~~~~~~~~fD~Ii~~d~---~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~  456 (523)
                         +++..+||+|++..+   +++...++.++..+.++|         +|+|.++
T Consensus        95 ---~~~~~~~D~ivs~~~~~~l~~e~~~~~~l~~~~r~L---------kp~G~ii  137 (316)
T d1oria_          95 ---ELPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWL---------APDGLIF  137 (316)
T ss_dssp             ---CCSSSCEEEEEECCCBBTBTBTCCHHHHHHHHHHHE---------EEEEEEE
T ss_pred             ---ccccceeEEEeeeeeeeeeccHHHHHHHHHHHHhcC---------CCCeEEE
Confidence               234579999998644   344678999999999999         5688776

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.32  E-value=5.5e-12  Score=113.64  Aligned_cols=127  Identities=15%  Similarity=0.119  Sum_probs=82.1

Q ss_pred             CCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcC
Q 009871          332 TIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENN  411 (523)
Q Consensus       332 ~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~  411 (523)
                      ...+|++|||+|||||.++..++..|+.+|+++|+|+.+++.+++|+..++..     ..+...|...          .+
T Consensus        43 ~dl~g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~~~a~~N~~~~~~~-----~~~~~~d~~~----------~~  107 (201)
T d1wy7a1          43 GDIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKGK-----FKVFIGDVSE----------FN  107 (201)
T ss_dssp             TSSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTTS-----EEEEESCGGG----------CC
T ss_pred             CCCCCCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHcCCC-----ceEEECchhh----------hC
Confidence            44589999999999999988888888889999999999999999998887643     3443333211          25


Q ss_pred             CCccEEEEccccCCCCC--hHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhHHHHHHHHcCCEEEEEcC
Q 009871          412 EGFEVILGTDVSYIPEA--ILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLVDKWP  485 (523)
Q Consensus       412 ~~fD~Ii~~d~~y~~~~--~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~~~~~~~~gf~~~~~~~  485 (523)
                      .+||+|+++........  -.+++.   ..+         ...+.++..+.........+...+.+.|+.+.....
T Consensus       108 ~~fD~Vi~nPP~~~~~~~~d~~~l~---~~~---------~~~~~v~~ih~~~~~~~~~i~~~~~~~g~~i~~~~~  171 (201)
T d1wy7a1         108 SRVDIVIMNPPFGSQRKHADRPFLL---KAF---------EISDVVYSIHLAKPEVRRFIEKFSWEHGFVVTHRLT  171 (201)
T ss_dssp             CCCSEEEECCCCSSSSTTTTHHHHH---HHH---------HHCSEEEEEEECCHHHHHHHHHHHHHTTEEEEEEEE
T ss_pred             CcCcEEEEcCccccccccccHHHHH---HHH---------hhcccchhcccchHHHHHHHHHHHhhcCceEEEEEE
Confidence            68999998655332221  122333   233         124455554433222222344556788988866543

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=99.32  E-value=1e-11  Score=116.38  Aligned_cols=74  Identities=18%  Similarity=0.219  Sum_probs=61.4

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC--CCcEEEEEeeccCCccCCCC-CCCceeEE
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISDDLSRQI-SPSSIDIV  150 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~~~~~~-~~~~fD~V  150 (523)
                      +++.+|||||||+|..+..+++.. ..+|+|||+|+.||+.|+++....  ..++.+.++|+...    ++ ..++||+|
T Consensus        23 ~~~~~VLDlGCG~G~~~~~~~~~~-~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~----~~~~~~~fD~V   97 (252)
T d1ri5a_          23 KRGDSVLDLGCGKGGDLLKYERAG-IGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGR----HMDLGKEFDVI   97 (252)
T ss_dssp             CTTCEEEEETCTTTTTHHHHHHHT-CSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTS----CCCCSSCEEEE
T ss_pred             CCcCEEEEecccCcHHHHHHHHcC-CCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhh----cccccccceEE
Confidence            478899999999999999998874 347999999999999999876432  35799999999765    33 36789999


Q ss_pred             EE
Q 009871          151 TM  152 (523)
Q Consensus       151 ~~  152 (523)
                      +|
T Consensus        98 ~~   99 (252)
T d1ri5a_          98 SS   99 (252)
T ss_dssp             EE
T ss_pred             EE
Confidence            99

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.31  E-value=2.8e-12  Score=125.08  Aligned_cols=110  Identities=16%  Similarity=0.204  Sum_probs=86.4

Q ss_pred             HhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhh
Q 009871          327 LARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAI  406 (523)
Q Consensus       327 l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~  406 (523)
                      +.++...++|++|||||||+|.++.++|+.|+.+|+++|.++ +++.+++++..|+..   .++.+...+..+.      
T Consensus        30 I~~~~~~~~~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~-~~~~a~~~~~~~~~~---~~i~~i~~~~~~l------   99 (328)
T d1g6q1_          30 IIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-IIEMAKELVELNGFS---DKITLLRGKLEDV------   99 (328)
T ss_dssp             HHHHHHHHTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESST-HHHHHHHHHHHTTCT---TTEEEEESCTTTS------
T ss_pred             HHhccccCCcCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCH-HHHHHHHHHHHhCcc---ccceEEEeehhhc------
Confidence            333344468999999999999998888888999999999986 678899999998876   5677766555443      


Q ss_pred             hhhcCCCccEEEEcccc---CCCCChHHHHHHHHHHhhccCCCCCCCCCcEEE
Q 009871          407 KEENNEGFEVILGTDVS---YIPEAILPLFATAKELTASSNKSLREDQQPAFI  456 (523)
Q Consensus       407 ~~~~~~~fD~Ii~~d~~---y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~  456 (523)
                       ++++.+||+|++..+.   .+...+..++....++|         +|||.++
T Consensus       100 -~~~~~~~D~i~se~~~~~~~~e~~~~~~~~a~~r~L---------kpgG~ii  142 (328)
T d1g6q1_         100 -HLPFPKVDIIISEWMGYFLLYESMMDTVLYARDHYL---------VEGGLIF  142 (328)
T ss_dssp             -CCSSSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHE---------EEEEEEE
T ss_pred             -cCcccceeEEEEEecceeeccchhHHHHHHHHHhcc---------CCCeEEE
Confidence             2345799999986554   45678899999999999         5677775

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=99.31  E-value=2.8e-12  Score=118.89  Aligned_cols=122  Identities=18%  Similarity=0.152  Sum_probs=90.1

Q ss_pred             hcCCCCCeEEEECCCccccHHHHHhh-CCCCEEEEEeCCHHHHHHHHhcccc--CCCcEEEEEeeccCCccCCCCCCCce
Q 009871           71 FSGAGRKDVLEVGCGAGNTIFPLIAA-YPDVFVYACDFSPRAVNLVMTHKDF--TETRVSTFVCDLISDDLSRQISPSSI  147 (523)
Q Consensus        71 ~~~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~v~gvD~S~~~l~~a~~~~~~--~~~~v~~~~~d~~~~~~~~~~~~~~f  147 (523)
                      +...++.+|||+|||+|.++..|++. .++.+|+++|+++++++.|+++...  ...++++.++|+.+.     +++++|
T Consensus        81 l~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~-----~~~~~f  155 (250)
T d1yb2a1          81 CGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADF-----ISDQMY  155 (250)
T ss_dssp             CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTC-----CCSCCE
T ss_pred             cCCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecc-----ccccee
Confidence            44578999999999999999999987 7788999999999999999998643  347899999999754     567899


Q ss_pred             eEEEEccccccceeeec-ceEEecCCeEEEee-CHH---HHHHHHHhCCCcEEEEE
Q 009871          148 DIVTMERLTGKDQKISE-NFYVRGDGTRAFYF-SND---FLTSLFKENGFDVEELG  198 (523)
Q Consensus       148 D~V~~~~~~~~~~~~~~-~~~~~~~g~~~~~~-~~~---~l~~ll~~~Gf~~~~~~  198 (523)
                      |.|++. +..++..+.. .-.++++|.++++. +.+   .+.+.+++.||..++..
T Consensus       156 D~V~ld-~p~p~~~l~~~~~~LKpGG~lv~~~P~i~Qv~~~~~~l~~~gf~~i~~~  210 (250)
T d1yb2a1         156 DAVIAD-IPDPWNHVQKIASMMKPGSVATFYLPNFDQSEKTVLSLSASGMHHLETV  210 (250)
T ss_dssp             EEEEEC-CSCGGGSHHHHHHTEEEEEEEEEEESSHHHHHHHHHHSGGGTEEEEEEE
T ss_pred             eeeeec-CCchHHHHHHHHHhcCCCceEEEEeCCcChHHHHHHHHHHCCCceeEEE
Confidence            999981 1112211111 11578888887653 444   45556677899765543

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.31  E-value=3e-12  Score=121.53  Aligned_cols=76  Identities=20%  Similarity=0.228  Sum_probs=65.0

Q ss_pred             hhhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhcccc--CCCcEEEEEeeccCCccCCCCCCCc
Q 009871           69 RYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDF--TETRVSTFVCDLISDDLSRQISPSS  146 (523)
Q Consensus        69 ~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~--~~~~v~~~~~d~~~~~~~~~~~~~~  146 (523)
                      +.+...++.+|||||||.|..+.++++.+ +++|+||++|+..++.|+++...  ...++++..+|...+       +++
T Consensus        56 ~~l~l~~G~~VLDiGCG~G~~a~~~a~~~-g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~-------~~~  127 (285)
T d1kpga_          56 GKLGLQPGMTLLDVGCGWGATMMRAVEKY-DVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQF-------DEP  127 (285)
T ss_dssp             TTTTCCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGC-------CCC
T ss_pred             HHcCCCCCCEEEEecCcchHHHHHHHhcC-CcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhcc-------ccc
Confidence            44566889999999999999999999887 68999999999999999987533  347899999998755       468


Q ss_pred             eeEEEE
Q 009871          147 IDIVTM  152 (523)
Q Consensus       147 fD~V~~  152 (523)
                      ||.|++
T Consensus       128 fD~i~s  133 (285)
T d1kpga_         128 VDRIVS  133 (285)
T ss_dssp             CSEEEE
T ss_pred             ccceee
Confidence            999999

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.31  E-value=1.5e-11  Score=111.42  Aligned_cols=152  Identities=17%  Similarity=0.213  Sum_probs=101.3

Q ss_pred             ccccchhHH-HHHHHHhc--CCCCCCCCeEEEECCCccHHHHHHHhc-CCCEEEEEcCChHHHHHHHHHHHhcCCCCCCC
Q 009871          313 GLMLWESAH-LMAAVLAR--NPTIVAGKKVLELGCGCGGICSMVAAG-SADLVVATDGDSIALDLLAQNVTANLKPPFLA  388 (523)
Q Consensus       313 G~~~W~~a~-~la~~l~~--~~~~~~~~~VLElG~G~G~l~~~~a~~-~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~  388 (523)
                      |.+.|+.-. -||..+..  ...+.+|.+|||||||+|..+..++.. +..+|+++|+++.|++.|+++++..      .
T Consensus        31 ~~r~w~p~rsklaa~i~~g~~l~lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~------~  104 (209)
T d1nt2a_          31 GYREWVPWRSKLAAMILKGHRLKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER------N  104 (209)
T ss_dssp             TEEECCGGGCHHHHHHHTSCCCCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC------S
T ss_pred             ceeeeCCcchHHHHHHhccccCCCCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhcc------C
Confidence            457886433 34444443  455678999999999999888888876 4458999999999999999988764      2


Q ss_pred             ceEEEeeecCCCCcchhhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCC---
Q 009871          389 KLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVD---  465 (523)
Q Consensus       389 ~v~~~~ldw~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~---  465 (523)
                      ++.+...+.......    ......+|+|+. | +++......+++.+.++|         +|||.++++...+..+   
T Consensus       105 ni~~i~~d~~~~~~~----~~~~~~vd~v~~-~-~~~~~~~~~~l~~~~~~L---------kpgG~l~i~~~~~~~d~~~  169 (209)
T d1nt2a_         105 NIIPLLFDASKPWKY----SGIVEKVDLIYQ-D-IAQKNQIEILKANAEFFL---------KEKGEVVIMVKARSIDSTA  169 (209)
T ss_dssp             SEEEECSCTTCGGGT----TTTCCCEEEEEE-C-CCSTTHHHHHHHHHHHHE---------EEEEEEEEEEEHHHHCTTS
T ss_pred             CceEEEeeccCcccc----ccccceEEEEEe-c-ccChhhHHHHHHHHHHHh---------ccCCeEEEEEEccccCCCC
Confidence            445544443332111    111234555544 3 566677888999999999         6799999987665322   


Q ss_pred             -hhHHHHH-H--HHcCCEEEEEcC
Q 009871          466 -EPSMLSA-A--TQCGFRLVDKWP  485 (523)
Q Consensus       466 -~~~~~~~-~--~~~gf~~~~~~~  485 (523)
                       ...+++. .  .+.||++.+...
T Consensus       170 ~~~~~~~~~~~~l~~gf~i~E~i~  193 (209)
T d1nt2a_         170 EPEEVFKSVLKEMEGDFKIVKHGS  193 (209)
T ss_dssp             CHHHHHHHHHHHHHTTSEEEEEEE
T ss_pred             CHHHHHHHHHHHHHcCCEEEEEEc
Confidence             1223322 1  247999987654

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.31  E-value=1.6e-12  Score=123.46  Aligned_cols=75  Identities=15%  Similarity=0.160  Sum_probs=61.4

Q ss_pred             hhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC--CCcEEEEEeeccCCccCCCCCCCce
Q 009871           70 YFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISDDLSRQISPSSI  147 (523)
Q Consensus        70 ~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~~~~~~~~~~f  147 (523)
                      .+...++.+|||||||.|.++..+++++ +++|+|||+|+.+++.|+++....  ..++.+...|....       +++|
T Consensus        47 ~l~l~~g~~VLDiGCG~G~~a~~~a~~~-g~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~-------~~~f  118 (280)
T d2fk8a1          47 KLDLKPGMTLLDIGCGWGTTMRRAVERF-DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF-------AEPV  118 (280)
T ss_dssp             TSCCCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGC-------CCCC
T ss_pred             HcCCCCCCEEEEecCCchHHHHHHHHhC-ceeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhh-------ccch
Confidence            3455789999999999999999988776 578999999999999999976433  35677777776543       5789


Q ss_pred             eEEEE
Q 009871          148 DIVTM  152 (523)
Q Consensus       148 D~V~~  152 (523)
                      |.|++
T Consensus       119 D~i~s  123 (280)
T d2fk8a1         119 DRIVS  123 (280)
T ss_dssp             SEEEE
T ss_pred             hhhhH
Confidence            99999

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=99.30  E-value=7.8e-12  Score=119.13  Aligned_cols=114  Identities=10%  Similarity=0.034  Sum_probs=88.7

Q ss_pred             HHHhcC-CCCCCCCeEEEECCCccHHHHHHHhcC--CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCC
Q 009871          325 AVLARN-PTIVAGKKVLELGCGCGGICSMVAAGS--ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRD  401 (523)
Q Consensus       325 ~~l~~~-~~~~~~~~VLElG~G~G~l~~~~a~~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~  401 (523)
                      +++... ..+.+..+|||+|||+|.++..++...  ..+|+++|+|+.+++.|++++...+.     ++.+...|..+. 
T Consensus        16 ~~l~~~~~~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~-----~~~f~~~d~~~~-   89 (281)
T d2gh1a1          16 SFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY-----DSEFLEGDATEI-   89 (281)
T ss_dssp             HHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSS-----EEEEEESCTTTC-
T ss_pred             HHHHHHHhccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccc-----cccccccccccc-
Confidence            445433 244577899999999998888887763  35899999999999999999887543     355555444332 


Q ss_pred             cchhhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEe
Q 009871          402 HIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHI  460 (523)
Q Consensus       402 ~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~  460 (523)
                            ++ +++||+|++..++++..+...+++.+.++|         +|||.+++...
T Consensus        90 ------~~-~~~fD~v~~~~~l~~~~d~~~~l~~~~~~L---------kpgG~lii~~~  132 (281)
T d2gh1a1          90 ------EL-NDKYDIAICHAFLLHMTTPETMLQKMIHSV---------KKGGKIICFEP  132 (281)
T ss_dssp             ------CC-SSCEEEEEEESCGGGCSSHHHHHHHHHHTE---------EEEEEEEEEEC
T ss_pred             ------cc-cCCceEEEEehhhhcCCCHHHHHHHHHHHc---------CcCcEEEEEEC
Confidence                  12 358999999999999999999999999999         67999887654

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=2.1e-12  Score=121.93  Aligned_cols=142  Identities=11%  Similarity=0.074  Sum_probs=97.9

Q ss_pred             CCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCC------------------------
Q 009871          332 TIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFL------------------------  387 (523)
Q Consensus       332 ~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~------------------------  387 (523)
                      ...+|.+|||||||+|.++.+.+.....+|+++|+|+.|++.+++++.........                        
T Consensus        51 g~~~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  130 (263)
T d2g72a1          51 GEVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQL  130 (263)
T ss_dssp             SCSCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHH
T ss_pred             CCCCCcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHh
Confidence            34588999999999997776777777779999999999999999887643321100                        


Q ss_pred             --CceEEEeeecCCCCcchhhhhhcCCCccEEEEccccCCC----CChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee
Q 009871          388 --AKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIP----EAILPLFATAKELTASSNKSLREDQQPAFILCHIF  461 (523)
Q Consensus       388 --~~v~~~~ldw~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~----~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~  461 (523)
                        ....+...|......... .....++||+|++.-++.+.    +.+..+++.+.++|         +|||.+++....
T Consensus       131 ~~~~~~~~~~Dv~~~~~~~~-~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~L---------kPGG~li~~~~~  200 (263)
T d2g72a1         131 RARVKRVLPIDVHQPQPLGA-GSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLL---------RPGGHLLLIGAL  200 (263)
T ss_dssp             HHHEEEEECCCTTSSSTTCS-SCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTE---------EEEEEEEEEEEE
T ss_pred             hhhhhccccccccCCCcccc-CCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHc---------CCCCEEEEeccc
Confidence              001111222222211111 12234689999999887552    35777888899999         779999886664


Q ss_pred             c--------------CCChhHHHHHHHHcCCEEEEE
Q 009871          462 R--------------QVDEPSMLSAATQCGFRLVDK  483 (523)
Q Consensus       462 r--------------~~~~~~~~~~~~~~gf~~~~~  483 (523)
                      +              ..+.+.+.+.+++.||++.+.
T Consensus       201 ~~~~~~~~~~~~~~~~~t~e~v~~~l~~aGf~v~~~  236 (263)
T d2g72a1         201 EESWYLAGEARLTVVPVSEEEVREALVRSGYKVRDL  236 (263)
T ss_dssp             SCCEEEETTEEEECCCCCHHHHHHHHHHTTEEEEEE
T ss_pred             CCcccccCCcccccCCCCHHHHHHHHHHCCCeEEEE
Confidence            2              246678899999999998765

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.30  E-value=3.2e-12  Score=115.26  Aligned_cols=118  Identities=15%  Similarity=0.202  Sum_probs=84.4

Q ss_pred             CCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhcccc-CCCcEEEEEeeccCCccCCCCCCCceeEEEE-
Q 009871           75 GRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDF-TETRVSTFVCDLISDDLSRQISPSSIDIVTM-  152 (523)
Q Consensus        75 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~-~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~-  152 (523)
                      +...|||||||+|..+..+++.+|+..++|||+++.++..|.++... ...|+.++++|+..+  ...++++++|.|++ 
T Consensus        29 ~~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l--~~~~~~~~~d~v~i~  106 (204)
T d2fcaa1          29 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTL--TDVFEPGEVKRVYLN  106 (204)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGH--HHHCCTTSCCEEEEE
T ss_pred             CCceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhh--hcccCchhhhccccc
Confidence            45689999999999999999999999999999999999999887643 346899999999854  22367899999988 


Q ss_pred             --ccccccc---eee------ec-ceEEecCCeEEEeeC----HHHHHHHHHhCCCcE
Q 009871          153 --ERLTGKD---QKI------SE-NFYVRGDGTRAFYFS----NDFLTSLFKENGFDV  194 (523)
Q Consensus       153 --~~~~~~~---~~~------~~-~~~~~~~g~~~~~~~----~~~l~~ll~~~Gf~~  194 (523)
                        ..+.+..   .++      .. ...++++|.+.+...    .+.+.+.+.+.|+..
T Consensus       107 fp~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~TD~~~y~~~~~~~~~~~~~~~  164 (204)
T d2fcaa1         107 FSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNRGLFEYSLKSFSEYGLLL  164 (204)
T ss_dssp             SCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCHHHHHHHHHHHHHHTCEE
T ss_pred             cccccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEECChHHHHHHHHHHHHCCCcc
Confidence              1110100   010      00 125788888766432    345666676666543

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=4.3e-12  Score=117.24  Aligned_cols=148  Identities=12%  Similarity=0.032  Sum_probs=101.5

Q ss_pred             HHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCC-------------CC
Q 009871          320 AHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKP-------------PF  386 (523)
Q Consensus       320 a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~-------------~~  386 (523)
                      ...|.+++.+.....++.+|||+|||+|..+..+|..|. +|+++|+|+.+|+.++++.......             ..
T Consensus        30 ~~~l~~~~~~~l~~~~~~rvLd~GCG~G~~a~~LA~~G~-~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~  108 (229)
T d2bzga1          30 HQLLKKHLDTFLKGKSGLRVFFPLCGKAVEMKWFADRGH-SVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSS  108 (229)
T ss_dssp             CHHHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHTTC-EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEET
T ss_pred             CHHHHHHHHHhcCCCCCCEEEEeCCCCcHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeec
Confidence            455666666554456888999999999999999998876 7999999999999998765432210             01


Q ss_pred             CCceEEEeeecCCCCcchhhhhhcCCCccEEEEccccCC--CCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecC-
Q 009871          387 LAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYI--PEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ-  463 (523)
Q Consensus       387 ~~~v~~~~ldw~~~~~~~~~~~~~~~~fD~Ii~~d~~y~--~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~-  463 (523)
                      ...+.+...|+.+      +.......||+|+...++++  ++.....++.+.++|         +|||.+++....+. 
T Consensus       109 ~~~v~~~~~d~~~------l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~L---------kpgG~~~l~~~~~~~  173 (229)
T d2bzga1         109 SGNISLYCCSIFD------LPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLL---------GKKFQYLLCVLSYDP  173 (229)
T ss_dssp             TSSEEEEESCGGG------GGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTE---------EEEEEEEEEEEECCT
T ss_pred             CCcEEEEEcchhh------ccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhc---------CCcceEEEEEcccCC
Confidence            1234444333321      12234578999999887776  467788999999999         67998877665532 


Q ss_pred             ---------CChhHHHHHHHHcCCEEEEEc
Q 009871          464 ---------VDEPSMLSAATQCGFRLVDKW  484 (523)
Q Consensus       464 ---------~~~~~~~~~~~~~gf~~~~~~  484 (523)
                               .+.+++.+.+ ..+|+++.+.
T Consensus       174 ~~~~gpp~~~~~~el~~lf-~~~~~i~~le  202 (229)
T d2bzga1         174 TKHPGPPFYVPHAEIERLF-GKICNIRCLE  202 (229)
T ss_dssp             TTCCCSSCCCCHHHHHHHH-TTTEEEEEEE
T ss_pred             CCCCCCCCCCCHHHHHHHh-cCCCEEEEEE
Confidence                     2334455555 4478776653

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=99.28  E-value=2.4e-11  Score=113.88  Aligned_cols=133  Identities=12%  Similarity=0.080  Sum_probs=102.3

Q ss_pred             CCCCCCeEEEECCCccHHHHHHHhcCCC-EEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhc
Q 009871          332 TIVAGKKVLELGCGCGGICSMVAAGSAD-LVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEEN  410 (523)
Q Consensus       332 ~~~~~~~VLElG~G~G~l~~~~a~~~~~-~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~  410 (523)
                      ++...++|||||||+|.++..+++..+. +++++|+ |++++.+++++...+..   .++.+...+..+.        + 
T Consensus        78 d~~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~~~---~ri~~~~~d~~~~--------~-  144 (256)
T d1qzza2          78 DWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLA---DRVTVAEGDFFKP--------L-  144 (256)
T ss_dssp             CCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCT---TTEEEEECCTTSC--------C-
T ss_pred             CCccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcCCc---ceeeeeeeecccc--------c-
Confidence            3445679999999999999989888654 8999998 88999999999887765   5677766544321        2 


Q ss_pred             CCCccEEEEccccCCCC--ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec-------------------------C
Q 009871          411 NEGFEVILGTDVSYIPE--AILPLFATAKELTASSNKSLREDQQPAFILCHIFR-------------------------Q  463 (523)
Q Consensus       411 ~~~fD~Ii~~d~~y~~~--~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r-------------------------~  463 (523)
                      +.+||+|++..++++..  ....+++.+.+.|         +|||++++.....                         .
T Consensus       145 p~~~D~v~~~~vLh~~~d~~~~~lL~~i~~~L---------kpgG~llI~d~~~~~~~~~~~~~~~~~d~~ml~~~~g~~  215 (256)
T d1qzza2         145 PVTADVVLLSFVLLNWSDEDALTILRGCVRAL---------EPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRV  215 (256)
T ss_dssp             SCCEEEEEEESCGGGSCHHHHHHHHHHHHHHE---------EEEEEEEEEECCH-------HHHHHHHHHHHHHHHSCCC
T ss_pred             cccchhhhccccccccCcHHHHHHHHHHHhhc---------CCcceeEEEEeccCCCCcccHHHHHHHHHHHHhhCCCcc
Confidence            34799999999998754  4567899999999         6799998875431                         1


Q ss_pred             CChhHHHHHHHHcCCEEEEEcCC
Q 009871          464 VDEPSMLSAATQCGFRLVDKWPS  486 (523)
Q Consensus       464 ~~~~~~~~~~~~~gf~~~~~~~~  486 (523)
                      .+..++.+.++++||++.++...
T Consensus       216 rt~~e~~~ll~~AGf~~~~~~~~  238 (256)
T d1qzza2         216 RTRDEVVDLAGSAGLALASERTS  238 (256)
T ss_dssp             CCHHHHHHHHHTTTEEEEEEEEE
T ss_pred             CCHHHHHHHHHHCCCceeEEEEe
Confidence            13456778888999999988663

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=1.5e-12  Score=120.37  Aligned_cols=118  Identities=12%  Similarity=0.080  Sum_probs=86.5

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEEE-
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM-  152 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~-  152 (523)
                      .++++|||||||+|..+..+++..+ .+|+|||+|+.|++.|+++......++.++..|+...  ..++++++||.|+. 
T Consensus        52 ~~g~~VLdIGcG~G~~a~~~a~~~~-~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~fD~i~fD  128 (229)
T d1zx0a1          52 SKGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDV--APTLPDGHFDGILYD  128 (229)
T ss_dssp             TTCEEEEEECCTTSHHHHHHHTSCE-EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHH--GGGSCTTCEEEEEEC
T ss_pred             cCCCeEEEeeccchHHHHHHHHcCC-CeEEEeCCCHHHHHHHHHHhhhccccccccccccccc--ccccccccccceeec
Confidence            5688999999999999999988753 5799999999999999998876667788888876532  22467889999986 


Q ss_pred             --------------ccccccceeeecceEEecCCeEEEee------------------CHHHHHHHHHhCCCcEEEEEe
Q 009871          153 --------------ERLTGKDQKISENFYVRGDGTRAFYF------------------SNDFLTSLFKENGFDVEELGL  199 (523)
Q Consensus       153 --------------~~~~~~~~~~~~~~~~~~~g~~~~~~------------------~~~~l~~ll~~~Gf~~~~~~~  199 (523)
                                    ..+++...+     .++++|.+.++.                  ..+.+...+.++||+...+..
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~r-----~LkpGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~agF~~~~i~~  202 (229)
T d1zx0a1         129 TYPLSEETWHTHQFNFIKNHAFR-----LLKPGGVLTYCNLTSWGELMKSKYSDITIMFEETQVPALLEAGFRRENIRT  202 (229)
T ss_dssp             CCCCBGGGTTTHHHHHHHHTHHH-----HEEEEEEEEECCHHHHHHHTTTTCSCHHHHHHHHTHHHHHHTTCCGGGEEE
T ss_pred             ccccccccccccCHHHHHHHHHH-----HcCCCcEEEEEecCCcchhhhhhhhhcchhhhhHHHHHHHHCCCeeEEEEE
Confidence                          111222223     688888887631                  124455667789998655543

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=99.27  E-value=1.3e-11  Score=115.71  Aligned_cols=137  Identities=14%  Similarity=0.170  Sum_probs=101.1

Q ss_pred             HHHHhcCCCCCCCCeEEEECCCccHHHHHHHhc-C-CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCC
Q 009871          324 AAVLARNPTIVAGKKVLELGCGCGGICSMVAAG-S-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRD  401 (523)
Q Consensus       324 a~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~-~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~  401 (523)
                      +.++....++.+|.+|||+|||+|.++..+|.. + ..+|+++|.++++++.|++|+...+..   ..+.+..-|...  
T Consensus        92 ~~~Ii~~l~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~---~~v~~~~~d~~~--  166 (266)
T d1o54a_          92 SSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLI---ERVTIKVRDISE--  166 (266)
T ss_dssp             HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCG---GGEEEECCCGGG--
T ss_pred             HHHHHHhhCCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccc---cCcEEEeccccc--
Confidence            444555557789999999999999999888876 3 358999999999999999999998764   455544322211  


Q ss_pred             cchhhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhHHHHHHHHcCCEEE
Q 009871          402 HIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLV  481 (523)
Q Consensus       402 ~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~~~~~~~~gf~~~  481 (523)
                            .+....||.|+.     +.......++.+.++|         +|||.+++..+. -.....+.+.+++.||...
T Consensus       167 ------~~~~~~~D~V~~-----d~p~p~~~l~~~~~~L---------KpGG~lv~~~P~-~~Qv~~~~~~l~~~gF~~i  225 (266)
T d1o54a_         167 ------GFDEKDVDALFL-----DVPDPWNYIDKCWEAL---------KGGGRFATVCPT-TNQVQETLKKLQELPFIRI  225 (266)
T ss_dssp             ------CCSCCSEEEEEE-----CCSCGGGTHHHHHHHE---------EEEEEEEEEESS-HHHHHHHHHHHHHSSEEEE
T ss_pred             ------cccccceeeeEe-----cCCCHHHHHHHHHhhc---------CCCCEEEEEeCc-ccHHHHHHHHHHHCCceeE
Confidence                  233567888765     3466788899999999         679988764432 2223467888899999988


Q ss_pred             EEcCC
Q 009871          482 DKWPS  486 (523)
Q Consensus       482 ~~~~~  486 (523)
                      ++++.
T Consensus       226 ~~~E~  230 (266)
T d1o54a_         226 EVWES  230 (266)
T ss_dssp             EEECC
T ss_pred             EEEEE
Confidence            88763

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=1e-11  Score=120.20  Aligned_cols=113  Identities=18%  Similarity=0.249  Sum_probs=84.3

Q ss_pred             HHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcc
Q 009871          324 AAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHI  403 (523)
Q Consensus       324 a~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~  403 (523)
                      .+.+.++...++|++|||||||+|.++.++|+.|+.+|+++|.++.++. +++++..|+..   .++.+...+..+.   
T Consensus        24 ~~ai~~~~~~~~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~~-a~~~~~~~~~~---~~i~~~~~~~~~l---   96 (311)
T d2fyta1          24 RDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQ-AMDIIRLNKLE---DTITLIKGKIEEV---   96 (311)
T ss_dssp             HHHHHHCGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHH-HHHHHHHTTCT---TTEEEEESCTTTS---
T ss_pred             HHHHHhccccCCcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHHH-HHHHHHHhCCC---ccceEEEeeHHHh---
Confidence            3456666677899999999999998888888889999999999998764 55666666654   5677766554432   


Q ss_pred             hhhhhhcCCCccEEEEccccCC---CCChHHHHHHHHHHhhccCCCCCCCCCcEEE
Q 009871          404 EAIKEENNEGFEVILGTDVSYI---PEAILPLFATAKELTASSNKSLREDQQPAFI  456 (523)
Q Consensus       404 ~~~~~~~~~~fD~Ii~~d~~y~---~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~  456 (523)
                          .++..+||+|++..+.+.   ...++.++....++|         +|+|.++
T Consensus        97 ----~~~~~~~D~Ivse~~~~~~~~e~~~~~~~~a~~~~L---------kp~G~ii  139 (311)
T d2fyta1          97 ----HLPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYL---------AKGGSVY  139 (311)
T ss_dssp             ----CCSCSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHE---------EEEEEEE
T ss_pred             ----cCccccceEEEEeeeeeecccccccHHHHHHHHhcC---------CCCcEEe
Confidence                234579999998644333   456778888888999         5688776

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.27  E-value=5e-12  Score=117.95  Aligned_cols=122  Identities=15%  Similarity=0.150  Sum_probs=90.0

Q ss_pred             hhcCCCCCeEEEECCCccccHHHHHhh-CCCCEEEEEeCCHHHHHHHHhcccc----CCCcEEEEEeeccCCccCCCCCC
Q 009871           70 YFSGAGRKDVLEVGCGAGNTIFPLIAA-YPDVFVYACDFSPRAVNLVMTHKDF----TETRVSTFVCDLISDDLSRQISP  144 (523)
Q Consensus        70 ~~~~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~v~gvD~S~~~l~~a~~~~~~----~~~~v~~~~~d~~~~~~~~~~~~  144 (523)
                      .+...++.+|||+|||+|.++..|++. +|+.+|+++|+++++++.|+++...    ...++.+.++|+.+.    ++++
T Consensus        91 ~l~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~----~~~~  166 (264)
T d1i9ga_          91 EGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADS----ELPD  166 (264)
T ss_dssp             HTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGC----CCCT
T ss_pred             HhCCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEecccccc----cccC
Confidence            445578999999999999999999998 8889999999999999999997642    247899999999877    6778


Q ss_pred             CceeEEEEccccccceeeec-ceEEecCCeEEEee-CHHHH---HHHHH-hCCCcEEE
Q 009871          145 SSIDIVTMERLTGKDQKISE-NFYVRGDGTRAFYF-SNDFL---TSLFK-ENGFDVEE  196 (523)
Q Consensus       145 ~~fD~V~~~~~~~~~~~~~~-~~~~~~~g~~~~~~-~~~~l---~~ll~-~~Gf~~~~  196 (523)
                      ++||.|++ ++..++..+.. .-.++++|.++.|. +.+++   .+.++ +.||..++
T Consensus       167 ~~fDaV~l-dlp~P~~~l~~~~~~LkpGG~lv~~~P~i~Qv~~~~~~l~~~~~f~~i~  223 (264)
T d1i9ga_         167 GSVDRAVL-DMLAPWEVLDAVSRLLVAGGVLMVYVATVTQLSRIVEALRAKQCWTEPR  223 (264)
T ss_dssp             TCEEEEEE-ESSCGGGGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHHSSBCCCE
T ss_pred             CCcceEEE-ecCCHHHHHHHHHhccCCCCEEEEEeCccChHHHHHHHHHHcCCeecce
Confidence            99999998 11122222211 11678888887654 45444   34443 56786543

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.26  E-value=3.4e-13  Score=129.68  Aligned_cols=106  Identities=19%  Similarity=0.277  Sum_probs=71.4

Q ss_pred             HhhHHHHHHHHhcccccccchhhhHHHHhhhhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhcc
Q 009871           40 EAKKYWDLFYKRHQDRFFKDRHYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHK  119 (523)
Q Consensus        40 ~~~~~Wd~~y~~~~~~f~~~~~~l~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~  119 (523)
                      ...++|+.++.....+....+.|+.    +++...++.+|||+|||+|.++..|+++  +++|+|+|+|+.||+.|+++.
T Consensus        25 ~~~~~~~~~~~~~~~r~~~~~~~l~----~~l~~~~~~~vLD~GcG~G~~~~~la~~--g~~v~gvD~S~~ml~~A~~~~   98 (292)
T d1xvaa_          25 EAARVWQLYIGDTRSRTAEYKAWLL----GLLRQHGCHRVLDVACGTGVDSIMLVEE--GFSVTSVDASDKMLKYALKER   98 (292)
T ss_dssp             HHHHHHHHHHHTTCCBCHHHHHHHH----HHHHHTTCCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHH
T ss_pred             hHHHHHHHHhcchhhhHHHHHHHHH----HHhhhcCCCEEEEecCCCcHHHHHHHHc--CCeeeeccCchHHHHHHHHHH
Confidence            3457899888765443332334443    3344356789999999999999999998  578999999999999999865


Q ss_pred             ccCC-----CcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871          120 DFTE-----TRVSTFVCDLISDDLSRQISPSSIDIVTM  152 (523)
Q Consensus       120 ~~~~-----~~v~~~~~d~~~~~~~~~~~~~~fD~V~~  152 (523)
                      ....     ....+..+++..++... ...++||+|+|
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~fd~v~~  135 (292)
T d1xvaa_          99 WNRRKEPAFDKWVIEEANWLTLDKDV-PAGDGFDAVIC  135 (292)
T ss_dssp             HHTTTSHHHHTCEEEECCGGGHHHHS-CCTTCEEEEEE
T ss_pred             Hhcccccccceeeeeecccccccccc-CCCCCceEEEE
Confidence            3322     12334455554332211 23568999998

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.26  E-value=5e-12  Score=120.32  Aligned_cols=76  Identities=20%  Similarity=0.190  Sum_probs=62.7

Q ss_pred             hhhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC--CCcEEEEEeeccCCccCCCCCCCc
Q 009871           69 RYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISDDLSRQISPSS  146 (523)
Q Consensus        69 ~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~~~~~~~~~~  146 (523)
                      +.+...++.+|||||||.|.++..+++++ +++|+||++|+++++.|+++....  ..++.+...|..       +++++
T Consensus        55 ~~l~l~~G~~VLDiGCG~G~~~~~~a~~~-g~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~-------~~~~~  126 (291)
T d1kpia_          55 DKLNLEPGMTLLDIGCGWGSTMRHAVAEY-DVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWE-------EFDEP  126 (291)
T ss_dssp             HTTCCCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGG-------GCCCC
T ss_pred             HhcCCCCCCEEEEecCcchHHHHHHHHhc-CcceeeccchHHHHHHHHHHHHhhccchhhhhhhhccc-------ccccc
Confidence            44566889999999999999999999886 579999999999999999876432  356777777763       34789


Q ss_pred             eeEEEE
Q 009871          147 IDIVTM  152 (523)
Q Consensus       147 fD~V~~  152 (523)
                      ||.|+|
T Consensus       127 fD~i~s  132 (291)
T d1kpia_         127 VDRIVS  132 (291)
T ss_dssp             CSEEEE
T ss_pred             cceEee
Confidence            999999

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=99.26  E-value=1.3e-11  Score=108.29  Aligned_cols=118  Identities=18%  Similarity=0.144  Sum_probs=80.4

Q ss_pred             HHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCc
Q 009871          323 MAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDH  402 (523)
Q Consensus       323 la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~  402 (523)
                      |.++|...  ..+|.+|||+|||+|.++..++++|+ +|+++|.|+.+++.+++|++.|+..   .++..  .   +.+.
T Consensus        31 lf~~l~~~--~~~g~~vLDl~~G~G~~~i~a~~~ga-~vv~vD~~~~a~~~~~~N~~~~~~~---~~v~~--~---~~d~   99 (171)
T d1ws6a1          31 LFDYLRLR--YPRRGRFLDPFAGSGAVGLEAASEGW-EAVLVEKDPEAVRLLKENVRRTGLG---ARVVA--L---PVEV   99 (171)
T ss_dssp             HHHHHHHH--CTTCCEEEEETCSSCHHHHHHHHTTC-EEEEECCCHHHHHHHHHHHHHHTCC---CEEEC--S---CHHH
T ss_pred             HHHHhhcc--ccCCCeEEEeccccchhhhhhhhccc-hhhhcccCHHHHhhhhHHHHhhccc---cceee--e---ehhc
Confidence            44555543  24788999999999999988888876 7999999999999999999999885   23322  1   1111


Q ss_pred             chhhhhhcCCCccEEEEccccCCCCChHHHHHHHH-HHhhccCCCCCCCCCcEEEEEEee
Q 009871          403 IEAIKEENNEGFEVILGTDVSYIPEAILPLFATAK-ELTASSNKSLREDQQPAFILCHIF  461 (523)
Q Consensus       403 ~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~-~ll~~~~~~~~~~~~g~~~l~~~~  461 (523)
                      ..........+||+|++ |..|..+....+...+. .+|         +++|.+++.+..
T Consensus       100 ~~~~~~~~~~~fD~If~-DPPY~~~~~~~l~~l~~~~ll---------~~~g~ivie~~~  149 (171)
T d1ws6a1         100 FLPEAKAQGERFTVAFM-APPYAMDLAALFGELLASGLV---------EAGGLYVLQHPK  149 (171)
T ss_dssp             HHHHHHHTTCCEEEEEE-CCCTTSCTTHHHHHHHHHTCE---------EEEEEEEEEEET
T ss_pred             ccccccccCCccceeEE-ccccccCHHHHHHHHHHcCCc---------CCCeEEEEEecC
Confidence            11111234568999998 66787665444444443 256         468887776543

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.26  E-value=6.1e-12  Score=114.03  Aligned_cols=119  Identities=14%  Similarity=0.223  Sum_probs=83.1

Q ss_pred             hcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEE
Q 009871           71 FSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIV  150 (523)
Q Consensus        71 ~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V  150 (523)
                      ++..++.+|||+|||+|..+..+++..|+.+|+|||+|+.|++.|++++... .++.++.+|+....... .....+|+|
T Consensus        52 l~lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~-~ni~~i~~d~~~~~~~~-~~~~~vd~v  129 (209)
T d1nt2a_          52 LKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER-NNIIPLLFDASKPWKYS-GIVEKVDLI  129 (209)
T ss_dssp             CCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC-SSEEEECSCTTCGGGTT-TTCCCEEEE
T ss_pred             CCCCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhcc-CCceEEEeeccCccccc-cccceEEEE
Confidence            4557899999999999999999999988889999999999999999876433 58999999998653332 223457777


Q ss_pred             EE--------ccccccceeeecceEEecCCeEEEee---------CH----HHHHHHHHhCCCcEEEE
Q 009871          151 TM--------ERLTGKDQKISENFYVRGDGTRAFYF---------SN----DFLTSLFKENGFDVEEL  197 (523)
Q Consensus       151 ~~--------~~~~~~~~~~~~~~~~~~~g~~~~~~---------~~----~~l~~ll~~~Gf~~~~~  197 (523)
                      ++        ..++....+     +++++|.++...         ..    ++....+ ++||++++.
T Consensus       130 ~~~~~~~~~~~~~l~~~~~-----~LkpgG~l~i~~~~~~~d~~~~~~~~~~~~~~~l-~~gf~i~E~  191 (209)
T d1nt2a_         130 YQDIAQKNQIEILKANAEF-----FLKEKGEVVIMVKARSIDSTAEPEEVFKSVLKEM-EGDFKIVKH  191 (209)
T ss_dssp             EECCCSTTHHHHHHHHHHH-----HEEEEEEEEEEEEHHHHCTTSCHHHHHHHHHHHH-HTTSEEEEE
T ss_pred             EecccChhhHHHHHHHHHH-----HhccCCeEEEEEEccccCCCCCHHHHHHHHHHHH-HcCCEEEEE
Confidence            66        111122222     677788775532         11    2223334 379998764

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=99.26  E-value=1.1e-11  Score=116.27  Aligned_cols=76  Identities=16%  Similarity=0.225  Sum_probs=62.1

Q ss_pred             hhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhcccc--CCCcEEEEEeeccCCccCCCCCCCce
Q 009871           70 YFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDF--TETRVSTFVCDLISDDLSRQISPSSI  147 (523)
Q Consensus        70 ~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~--~~~~v~~~~~d~~~~~~~~~~~~~~f  147 (523)
                      .++.....+|||||||+|..+..+++++|+.+++++|+ |.+++.|+++...  ...++.++.+|+..     +.+ .+|
T Consensus        76 ~~d~~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~~~-----~~p-~~~  148 (256)
T d1qzza2          76 AYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFK-----PLP-VTA  148 (256)
T ss_dssp             TSCCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-----CCS-CCE
T ss_pred             cCCCccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcCCcceeeeeeeeccc-----ccc-ccc
Confidence            34445678999999999999999999999999999997 7899999886543  24679999999864     233 459


Q ss_pred             eEEEE
Q 009871          148 DIVTM  152 (523)
Q Consensus       148 D~V~~  152 (523)
                      |+|++
T Consensus       149 D~v~~  153 (256)
T d1qzza2         149 DVVLL  153 (256)
T ss_dssp             EEEEE
T ss_pred             hhhhc
Confidence            99999

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.25  E-value=2.7e-11  Score=113.30  Aligned_cols=127  Identities=12%  Similarity=0.121  Sum_probs=93.8

Q ss_pred             CCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCC
Q 009871          334 VAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG  413 (523)
Q Consensus       334 ~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~  413 (523)
                      .+|.+|||+|||+|.++..+|+.++.+|+++|++|.+++.+++|++.|++.   +++.+...|..+.        .....
T Consensus       106 ~~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~~n~l~---~~v~~~~~D~~~~--------~~~~~  174 (260)
T d2frna1         106 KPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVE---DRMSAYNMDNRDF--------PGENI  174 (260)
T ss_dssp             CTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCT---TTEEEECSCTTTC--------CCCSC
T ss_pred             CCccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHHHHHHHHhCCC---ceEEEEEcchHHh--------ccCCC
Confidence            378999999999999999999888789999999999999999999999986   5677776665432        12457


Q ss_pred             ccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecC---C--ChhHHHHHHHHcCCEEEEEc
Q 009871          414 FEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ---V--DEPSMLSAATQCGFRLVDKW  484 (523)
Q Consensus       414 fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~---~--~~~~~~~~~~~~gf~~~~~~  484 (523)
                      ||.|++....+    -..++..+.++|         ++||.+.+-.....   .  ..+.+.+.++..|+++..+.
T Consensus       175 ~D~Ii~~~p~~----~~~~l~~a~~~l---------~~gG~lh~~~~~~~~~~~~~~~e~~~~~~~~~g~~v~~~~  237 (260)
T d2frna1         175 ADRILMGYVVR----THEFIPKALSIA---------KDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDVEKLN  237 (260)
T ss_dssp             EEEEEECCCSS----GGGGHHHHHHHE---------EEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEEEEEE
T ss_pred             CCEEEECCCCc----hHHHHHHHHhhc---------CCCCEEEEEeccccccchhhHHHHHHHHHHHcCCceEEEE
Confidence            99999875443    345666777788         56888754322211   1  12345567778999986554

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=7.4e-11  Score=109.76  Aligned_cols=87  Identities=16%  Similarity=0.239  Sum_probs=68.0

Q ss_pred             CCCeEEEECCCccHHHHHHHhcC-CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCC
Q 009871          335 AGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG  413 (523)
Q Consensus       335 ~~~~VLElG~G~G~l~~~~a~~~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~  413 (523)
                      +..+|||||||+|.++.++++.. ..+|+++|+|+++++.|++|++.|++.   .++.+...+|... ....+.....++
T Consensus        61 ~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~---~~~~~~~~~~~~~-~~~~~~~~~~~~  136 (250)
T d2h00a1          61 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLS---DLIKVVKVPQKTL-LMDALKEESEII  136 (250)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCT---TTEEEEECCTTCS-STTTSTTCCSCC
T ss_pred             ccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCCC---cceeeeeeccHHh-hhhhhhhcccCc
Confidence            44699999999999998888873 568999999999999999999999886   6777777666543 122222234568


Q ss_pred             ccEEEEccccCC
Q 009871          414 FEVILGTDVSYI  425 (523)
Q Consensus       414 fD~Ii~~d~~y~  425 (523)
                      ||+|+++...|.
T Consensus       137 fD~ivsNPPY~~  148 (250)
T d2h00a1         137 YDFCMCNPPFFA  148 (250)
T ss_dssp             BSEEEECCCCC-
T ss_pred             eeEEEecCcccc
Confidence            999999988875

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=1.3e-11  Score=117.71  Aligned_cols=134  Identities=10%  Similarity=0.136  Sum_probs=93.0

Q ss_pred             CCCeEEEECCCccHHHHHHHhc----C---CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcc----
Q 009871          335 AGKKVLELGCGCGGICSMVAAG----S---ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHI----  403 (523)
Q Consensus       335 ~~~~VLElG~G~G~l~~~~a~~----~---~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~----  403 (523)
                      ++.+|||||||+|.++..++..    .   ..+++++|+|+.|++.+++++......   ..+.   ++|......    
T Consensus        40 ~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~---~~~~---~~~~~~~~~~~~~  113 (280)
T d1jqea_          40 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNL---ENVK---FAWHKETSSEYQS  113 (280)
T ss_dssp             SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSC---TTEE---EEEECSCHHHHHH
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhcccc---cccc---ccchhhhhhhhcc
Confidence            3348999999999877665542    1   226899999999999999987653221   2332   344432110    


Q ss_pred             hhhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecC--------------------
Q 009871          404 EAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ--------------------  463 (523)
Q Consensus       404 ~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~--------------------  463 (523)
                      .......+++||+|++..++|+..++..+++.+.++|         +|||.+++......                    
T Consensus       114 ~~~~~~~~~~fD~I~~~~~l~~~~d~~~~l~~l~~~L---------kpgG~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~  184 (280)
T d1jqea_         114 RMLEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLL---------GTNAKMLIIVVSGSSGWDKLWKKYGSRFPQDDLC  184 (280)
T ss_dssp             HHTTSSSCCCEEEEEEESCGGGCSCHHHHHHHHHHTE---------EEEEEEEEEEECTTSHHHHHHHHHGGGSCCCTTS
T ss_pred             hhcccCCCCceeEEEEccceecCCCHHHHHHHHHhhC---------CCCCEEEEEEecCcchHHHHHHHHHHhcCCCccc
Confidence            0011235679999999999999999999999999999         67998877654311                    


Q ss_pred             --CChhHHHHHHHHcCCEEEEE
Q 009871          464 --VDEPSMLSAATQCGFRLVDK  483 (523)
Q Consensus       464 --~~~~~~~~~~~~~gf~~~~~  483 (523)
                        .....+.+.+++.||.+...
T Consensus       185 ~~~~~~~~~~~L~~~G~~~~~~  206 (280)
T d1jqea_         185 QYITSDDLTQMLDNLGLKYECY  206 (280)
T ss_dssp             CCCCHHHHHHHHHHHTCCEEEE
T ss_pred             ccCCHHHHHHHHHHCCCceEEE
Confidence              12345667788889976443

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.22  E-value=3.4e-12  Score=122.51  Aligned_cols=112  Identities=15%  Similarity=0.224  Sum_probs=80.9

Q ss_pred             CCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCc
Q 009871          335 AGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGF  414 (523)
Q Consensus       335 ~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~f  414 (523)
                      .+++|||||||+|.++..++..| .+|+++|+|+.||+.|+++...++.........+...+|...+.    ......+|
T Consensus        56 ~~~~vLD~GcG~G~~~~~la~~g-~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~f  130 (292)
T d1xvaa_          56 GCHRVLDVACGTGVDSIMLVEEG-FSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDK----DVPAGDGF  130 (292)
T ss_dssp             TCCEEEESSCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHH----HSCCTTCE
T ss_pred             CCCEEEEecCCCcHHHHHHHHcC-CeeeeccCchHHHHHHHHHHHhcccccccceeeeeecccccccc----ccCCCCCc
Confidence            56799999999999999998886 47999999999999999998876654222233444555532210    01124689


Q ss_pred             cEEEEc-cccCCC-------CChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEe
Q 009871          415 EVILGT-DVSYIP-------EAILPLFATAKELTASSNKSLREDQQPAFILCHI  460 (523)
Q Consensus       415 D~Ii~~-d~~y~~-------~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~  460 (523)
                      |+|++. +++.+.       +....+++.+.++|         +|||.+++...
T Consensus       131 d~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L---------kpgG~li~~~~  175 (292)
T d1xvaa_         131 DAVICLGNSFAHLPDSKGDQSEHRLALKNIASMV---------RPGGLLVIDHR  175 (292)
T ss_dssp             EEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTE---------EEEEEEEEEEE
T ss_pred             eEEEEecCchhhcCCcccChHHHHHHHHHHHHHc---------CcCcEEEEeec
Confidence            999975 455432       23667999999999         77999998764

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=9.9e-12  Score=114.69  Aligned_cols=145  Identities=20%  Similarity=0.244  Sum_probs=95.9

Q ss_pred             ccchhHH--HHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEE
Q 009871          315 MLWESAH--LMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLIT  392 (523)
Q Consensus       315 ~~W~~a~--~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~  392 (523)
                      ..|...+  .+++.+.     .+|.+|||||||+|..+..+++.++.+|+++|+|+.+++.|+++.....     ..+..
T Consensus        36 ~~w~~~~~~~la~~~~-----~~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~~~a~~~~~~~~-----~~~~~  105 (229)
T d1zx0a1          36 ERWETPYMHALAAAAS-----SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT-----HKVIP  105 (229)
T ss_dssp             EGGGHHHHHHHHHHHT-----TTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCS-----SEEEE
T ss_pred             HHHHHHHHHHHHHhhc-----cCCCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHHHHHHHHhhhcc-----ccccc
Confidence            3476543  3444443     2678999999999988888888777789999999999999999876633     23444


Q ss_pred             EeeecCCCCcchhhhhhcCCCccEEEE-----ccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecC----
Q 009871          393 KRLEWGNRDHIEAIKEENNEGFEVILG-----TDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ----  463 (523)
Q Consensus       393 ~~ldw~~~~~~~~~~~~~~~~fD~Ii~-----~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~----  463 (523)
                      ...++..     ....++.++||.|+.     ...+.+......+++.+.++|         +|||.+++......    
T Consensus       106 ~~~~~~~-----~~~~~~~~~fD~i~fD~~~~~~~~~~~~~~~~~~~~~~r~L---------kpGG~~~~~~~~~~~~~~  171 (229)
T d1zx0a1         106 LKGLWED-----VAPTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLL---------KPGGVLTYCNLTSWGELM  171 (229)
T ss_dssp             EESCHHH-----HGGGSCTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHE---------EEEEEEEECCHHHHHHHT
T ss_pred             ccccccc-----cccccccccccceeecccccccccccccCHHHHHHHHHHHc---------CCCcEEEEEecCCcchhh
Confidence            3333321     112455679999884     334444556778999999999         67998876432210    


Q ss_pred             ----CC-----hhHHHHHHHHcCCEEEEE
Q 009871          464 ----VD-----EPSMLSAATQCGFRLVDK  483 (523)
Q Consensus       464 ----~~-----~~~~~~~~~~~gf~~~~~  483 (523)
                          ..     .......+.+.||+...+
T Consensus       172 ~~~~~~~~~~~~~~~~~~l~~agF~~~~i  200 (229)
T d1zx0a1         172 KSKYSDITIMFEETQVPALLEAGFRRENI  200 (229)
T ss_dssp             TTTCSCHHHHHHHHTHHHHHHTTCCGGGE
T ss_pred             hhhhhhcchhhhhHHHHHHHHCCCeeEEE
Confidence                01     122344567789975443

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=99.20  E-value=2e-11  Score=114.48  Aligned_cols=119  Identities=17%  Similarity=0.117  Sum_probs=89.9

Q ss_pred             hhcCCCCCeEEEECCCccccHHHHHhh-CCCCEEEEEeCCHHHHHHHHhccccC--CCcEEEEEeeccCCccCCCCCCCc
Q 009871           70 YFSGAGRKDVLEVGCGAGNTIFPLIAA-YPDVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISDDLSRQISPSS  146 (523)
Q Consensus        70 ~~~~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~v~gvD~S~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~~~~~~~~~~  146 (523)
                      ++...++.+|||+|||+|.++..|++. .|+++|+|+|+|+++++.|+++....  ..++.+...|+..     .+....
T Consensus        98 ~l~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~-----~~~~~~  172 (266)
T d1o54a_          98 MLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISE-----GFDEKD  172 (266)
T ss_dssp             HTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGG-----CCSCCS
T ss_pred             hhCCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEeccccc-----cccccc
Confidence            455678999999999999999999988 57889999999999999999987533  3578888888753     356788


Q ss_pred             eeEEEE-----ccccccceeeecceEEecCCeEEEee-CH---HHHHHHHHhCCCcEEEEE
Q 009871          147 IDIVTM-----ERLTGKDQKISENFYVRGDGTRAFYF-SN---DFLTSLFKENGFDVEELG  198 (523)
Q Consensus       147 fD~V~~-----~~~~~~~~~~~~~~~~~~~g~~~~~~-~~---~~l~~ll~~~Gf~~~~~~  198 (523)
                      ||.|+.     ..++....+     .++++|.++.+. +.   +++.+.+++.||..+++.
T Consensus       173 ~D~V~~d~p~p~~~l~~~~~-----~LKpGG~lv~~~P~~~Qv~~~~~~l~~~gF~~i~~~  228 (266)
T d1o54a_         173 VDALFLDVPDPWNYIDKCWE-----ALKGGGRFATVCPTTNQVQETLKKLQELPFIRIEVW  228 (266)
T ss_dssp             EEEEEECCSCGGGTHHHHHH-----HEEEEEEEEEEESSHHHHHHHHHHHHHSSEEEEEEE
T ss_pred             eeeeEecCCCHHHHHHHHHh-----hcCCCCEEEEEeCcccHHHHHHHHHHHCCceeEEEE
Confidence            999988     222222223     678888887653 44   445666788999766543

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.19  E-value=1.2e-10  Score=106.33  Aligned_cols=152  Identities=17%  Similarity=0.181  Sum_probs=102.5

Q ss_pred             ccccchhHH-HHHHHHhc---CCCCCCCCeEEEECCCccHHHHHHHhc-C-CCEEEEEcCChHHHHHHHHHHHhcCCCCC
Q 009871          313 GLMLWESAH-LMAAVLAR---NPTIVAGKKVLELGCGCGGICSMVAAG-S-ADLVVATDGDSIALDLLAQNVTANLKPPF  386 (523)
Q Consensus       313 G~~~W~~a~-~la~~l~~---~~~~~~~~~VLElG~G~G~l~~~~a~~-~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~  386 (523)
                      ..++|+.-. -|+..+..   +..+.+|.+|||||||+|..+..++.. | ..+|+++|+++.+++.++.+++..+    
T Consensus        47 e~R~w~p~rSKlaa~i~~~l~~l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~----  122 (227)
T d1g8aa_          47 EYRIWNPNRSKLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERR----  122 (227)
T ss_dssp             EEEECCTTTCHHHHHHHTTCCCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCT----
T ss_pred             eEEEECCCccHHHHHHHccccccccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcC----
Confidence            356665422 24444543   445779999999999999999999886 4 3599999999999999998876532    


Q ss_pred             CCceEEEeeecCCCCcchhhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCC-
Q 009871          387 LAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVD-  465 (523)
Q Consensus       387 ~~~v~~~~ldw~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~-  465 (523)
                        .+.....+-...   ... ......+|+|+. | +.++.....+++.+.++|         +|||.++++...+..+ 
T Consensus       123 --~~~~i~~d~~~~---~~~-~~~~~~vD~i~~-d-~~~~~~~~~~l~~~~~~L---------kpgG~lvi~~ka~~~~~  185 (227)
T d1g8aa_         123 --NIVPILGDATKP---EEY-RALVPKVDVIFE-D-VAQPTQAKILIDNAEVYL---------KRGGYGMIAVKSRSIDV  185 (227)
T ss_dssp             --TEEEEECCTTCG---GGG-TTTCCCEEEEEE-C-CCSTTHHHHHHHHHHHHE---------EEEEEEEEEEEGGGTCT
T ss_pred             --CceEEEEECCCc---ccc-cccccceEEEEE-E-ccccchHHHHHHHHHHhc---------ccCCeEEEEEECCccCC
Confidence              233333332222   111 122457888876 4 445667888999999999         6799999987665432 


Q ss_pred             ---hhHHH---HHHHHcCCEEEEEcC
Q 009871          466 ---EPSML---SAATQCGFRLVDKWP  485 (523)
Q Consensus       466 ---~~~~~---~~~~~~gf~~~~~~~  485 (523)
                         ...++   +.+.+.||++.+...
T Consensus       186 ~~~~~~v~~~v~~l~~~gf~iie~i~  211 (227)
T d1g8aa_         186 TKEPEQVFREVERELSEYFEVIERLN  211 (227)
T ss_dssp             TSCHHHHHHHHHHHHHTTSEEEEEEE
T ss_pred             CCCHHHHHHHHHHHHHcCCEEEEEEc
Confidence               22333   334567999987644

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=99.18  E-value=3.4e-11  Score=106.73  Aligned_cols=108  Identities=7%  Similarity=0.043  Sum_probs=82.9

Q ss_pred             CCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCC
Q 009871          334 VAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG  413 (523)
Q Consensus       334 ~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~  413 (523)
                      ..+.+||||+||||.++..++++|+.+|+++|.++.+++.+++|++.++..    .+.+...|.     +.-+ .....+
T Consensus        42 ~~~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k~N~~~~~~~----~~~ii~~d~-----~~~l-~~~~~~  111 (183)
T d2fpoa1          42 IVDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAG----NARVVNSNA-----MSFL-AQKGTP  111 (183)
T ss_dssp             HTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCC----SEEEECSCH-----HHHH-SSCCCC
T ss_pred             cchhhhhhhhccccceeeeEEecCcceeEEEEEeechhhHHHHHHhhcccc----ceeeeeecc-----cccc-cccccc
Confidence            478899999999999999999999999999999999999999999987653    344433222     1111 123568


Q ss_pred             ccEEEEccccCCCCChHHHHHHHHH--HhhccCCCCCCCCCcEEEEEEee
Q 009871          414 FEVILGTDVSYIPEAILPLFATAKE--LTASSNKSLREDQQPAFILCHIF  461 (523)
Q Consensus       414 fD~Ii~~d~~y~~~~~~~l~~~l~~--ll~~~~~~~~~~~~g~~~l~~~~  461 (523)
                      ||+|++ |..|.......++..+..  +|         +++|.+++-+..
T Consensus       112 fDlIf~-DPPY~~~~~~~~l~~l~~~~~L---------~~~~iIiiE~~~  151 (183)
T d2fpoa1         112 HNIVFV-DPPFRRGLLEETINLLEDNGWL---------ADEALIYVESEV  151 (183)
T ss_dssp             EEEEEE-CCSSSTTTHHHHHHHHHHTTCE---------EEEEEEEEEEEG
T ss_pred             cCEEEE-cCccccchHHHHHHHHHHCCCC---------CCCeEEEEEecC
Confidence            999999 677888888888888876  46         457777775443

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=99.17  E-value=2.1e-11  Score=109.46  Aligned_cols=138  Identities=9%  Similarity=-0.017  Sum_probs=93.3

Q ss_pred             CCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCC--------CCCceEEEeeecCCCCcc
Q 009871          332 TIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPP--------FLAKLITKRLEWGNRDHI  403 (523)
Q Consensus       332 ~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~--------~~~~v~~~~ldw~~~~~~  403 (523)
                      .+.++.+|||+|||+|..+..+|.+|. +|+++|+|+.|++.+++++.......        ....+.+...++.+..  
T Consensus        17 ~~~~~~rvLd~GCG~G~~a~~la~~G~-~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~--   93 (201)
T d1pjza_          17 NVVPGARVLVPLCGKSQDMSWLSGQGY-HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALT--   93 (201)
T ss_dssp             CCCTTCEEEETTTCCSHHHHHHHHHCC-EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSST--
T ss_pred             CCCCCCEEEEecCcCCHHHHHHHHcCC-ceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecccccccc--
Confidence            345899999999999999999998874 79999999999999998875432210        0112233334443321  


Q ss_pred             hhhhhhcCCCccEEEEccccCCCC--ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCC----------ChhHHHH
Q 009871          404 EAIKEENNEGFEVILGTDVSYIPE--AILPLFATAKELTASSNKSLREDQQPAFILCHIFRQV----------DEPSMLS  471 (523)
Q Consensus       404 ~~~~~~~~~~fD~Ii~~d~~y~~~--~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~----------~~~~~~~  471 (523)
                          ......||+|+++.++++..  ....+++.+.++|         +|||.+++....+..          +.+++.+
T Consensus        94 ----~~~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~L---------kpgG~l~l~~~~~~~~~~~~p~~~~~~~el~~  160 (201)
T d1pjza_          94 ----ARDIGHCAAFYDRAAMIALPADMRERYVQHLEALM---------PQACSGLLITLEYDQALLEGPPFSVPQTWLHR  160 (201)
T ss_dssp             ----HHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHS---------CSEEEEEEEEESSCSSSSSSCCCCCCHHHHHH
T ss_pred             ----cccccceeEEEEEeeeEecchhhhHHHHHHHHHhc---------CCCcEEEEEEcccccccCCCccccCCHHHHHH
Confidence                11235899999998887643  5678999999999         779988776554322          1222322


Q ss_pred             HHHHcCCEEEEEcCC
Q 009871          472 AATQCGFRLVDKWPS  486 (523)
Q Consensus       472 ~~~~~gf~~~~~~~~  486 (523)
                       +-..+|.+..+...
T Consensus       161 -l~~~~~~i~~~~~~  174 (201)
T d1pjza_         161 -VMSGNWEVTKVGGQ  174 (201)
T ss_dssp             -TSCSSEEEEEEEES
T ss_pred             -HhCCCcEEEEEEEe
Confidence             22457887666543

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.16  E-value=4.6e-11  Score=111.31  Aligned_cols=146  Identities=13%  Similarity=0.147  Sum_probs=99.4

Q ss_pred             cccchhHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhc-CC-CEEEEEcCChHHHHHHHHHHHhcCCCCCCCceE
Q 009871          314 LMLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAG-SA-DLVVATDGDSIALDLLAQNVTANLKPPFLAKLI  391 (523)
Q Consensus       314 ~~~W~~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~-~~-~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~  391 (523)
                      ..++|.-   +.++....++.+|.+|||+|||+|.++..+|.. ++ .+|+++|.++++++.|++|++.-... ...++.
T Consensus        78 qiiypkD---~s~Ii~~l~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~-~~~nv~  153 (264)
T d1i9ga_          78 QVIYPKD---AAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQ-PPDNWR  153 (264)
T ss_dssp             CCCCHHH---HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTS-CCTTEE
T ss_pred             cccchHH---HHHHHHHhCCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccC-CCceEE
Confidence            4455444   333334456678999999999999999888876 43 49999999999999999999864221 124566


Q ss_pred             EEeeecCCCCcchhhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhHHHH
Q 009871          392 TKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLS  471 (523)
Q Consensus       392 ~~~ldw~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~~~  471 (523)
                      +...|..+.       ++++..||.|+. |    .......+..+.++|         +|||.+++..+. -.....+.+
T Consensus       154 ~~~~d~~~~-------~~~~~~fDaV~l-d----lp~P~~~l~~~~~~L---------kpGG~lv~~~P~-i~Qv~~~~~  211 (264)
T d1i9ga_         154 LVVSDLADS-------ELPDGSVDRAVL-D----MLAPWEVLDAVSRLL---------VAGGVLMVYVAT-VTQLSRIVE  211 (264)
T ss_dssp             EECSCGGGC-------CCCTTCEEEEEE-E----SSCGGGGHHHHHHHE---------EEEEEEEEEESS-HHHHHHHHH
T ss_pred             EEecccccc-------cccCCCcceEEE-e----cCCHHHHHHHHHhcc---------CCCCEEEEEeCc-cChHHHHHH
Confidence            655443322       345679999986 3    355667899999999         678887554322 223345666


Q ss_pred             HHH-HcCCEEEEEcC
Q 009871          472 AAT-QCGFRLVDKWP  485 (523)
Q Consensus       472 ~~~-~~gf~~~~~~~  485 (523)
                      .++ +.||.-.++.+
T Consensus       212 ~l~~~~~f~~i~~~E  226 (264)
T d1i9ga_         212 ALRAKQCWTEPRAWE  226 (264)
T ss_dssp             HHHHHSSBCCCEEEC
T ss_pred             HHHHcCCeecceEEE
Confidence            665 56787656555

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.16  E-value=3.3e-11  Score=106.59  Aligned_cols=110  Identities=19%  Similarity=0.351  Sum_probs=84.0

Q ss_pred             CCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCC
Q 009871          334 VAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG  413 (523)
Q Consensus       334 ~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~  413 (523)
                      ..|.+||||+||||.++..++++|+.+|+++|.++.+++.+++|++.++..   .++.+...|..+.  +..+ .....+
T Consensus        40 ~~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~~~~N~~~~~~~---~~~~i~~~D~~~~--l~~~-~~~~~~  113 (182)
T d2fhpa1          40 FDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEP---EKFEVRKMDANRA--LEQF-YEEKLQ  113 (182)
T ss_dssp             CSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCG---GGEEEEESCHHHH--HHHH-HHTTCC
T ss_pred             cCCCEEEEcccccccccceeeecchhHHHHHHHHHHHHHHHHHHhhhhhcc---cccccccccchhh--hhhh-cccCCC
Confidence            578999999999999999999999999999999999999999999988765   4566655443211  1111 113458


Q ss_pred             ccEEEEccccCCCCChHHHHHHHHH--HhhccCCCCCCCCCcEEEEEE
Q 009871          414 FEVILGTDVSYIPEAILPLFATAKE--LTASSNKSLREDQQPAFILCH  459 (523)
Q Consensus       414 fD~Ii~~d~~y~~~~~~~l~~~l~~--ll~~~~~~~~~~~~g~~~l~~  459 (523)
                      ||+|+. |..|.......++..+..  +|         +++|.+++-+
T Consensus       114 fDlIfl-DPPY~~~~~~~~l~~i~~~~~L---------~~~giIi~E~  151 (182)
T d2fhpa1         114 FDLVLL-DPPYAKQEIVSQLEKMLERQLL---------TNEAVIVCET  151 (182)
T ss_dssp             EEEEEE-CCCGGGCCHHHHHHHHHHTTCE---------EEEEEEEEEE
T ss_pred             cceEEe-chhhhhhHHHHHHHHHHHCCCC---------CCCEEEEEEc
Confidence            999997 777888888888888765  56         4577776644

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.16  E-value=3.3e-11  Score=109.53  Aligned_cols=82  Identities=15%  Similarity=0.125  Sum_probs=69.1

Q ss_pred             HhhhhcCCCCCeEEEECCCccccHHHHHhh-CCCCEEEEEeCCHHHHHHHHhcccc-CCCcEEEEEeeccCCccCCCCCC
Q 009871           67 WGRYFSGAGRKDVLEVGCGAGNTIFPLIAA-YPDVFVYACDFSPRAVNLVMTHKDF-TETRVSTFVCDLISDDLSRQISP  144 (523)
Q Consensus        67 ~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~v~gvD~S~~~l~~a~~~~~~-~~~~v~~~~~d~~~~~~~~~~~~  144 (523)
                      +-+.+...++.+|||||||+|..+..|++. .+..+|+++|+++.+++.|+++... ...++.++++|..+.    ...+
T Consensus        67 ~l~~l~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~----~~~~  142 (213)
T d1dl5a1          67 FMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYG----VPEF  142 (213)
T ss_dssp             HHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGC----CGGG
T ss_pred             HHHhhhccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHHc----cccc
Confidence            345566788999999999999999999987 5678999999999999999998643 346889999998865    4557


Q ss_pred             CceeEEEE
Q 009871          145 SSIDIVTM  152 (523)
Q Consensus       145 ~~fD~V~~  152 (523)
                      ++||+|++
T Consensus       143 ~~fD~I~~  150 (213)
T d1dl5a1         143 SPYDVIFV  150 (213)
T ss_dssp             CCEEEEEE
T ss_pred             cchhhhhh
Confidence            78999998

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.16  E-value=2.1e-11  Score=109.50  Aligned_cols=78  Identities=17%  Similarity=0.257  Sum_probs=64.7

Q ss_pred             hhhhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC---CCcEEEEEeeccCCccCCCCCC
Q 009871           68 GRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT---ETRVSTFVCDLISDDLSRQISP  144 (523)
Q Consensus        68 ~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~---~~~v~~~~~d~~~~~~~~~~~~  144 (523)
                      .+.++..++.+|||+|||+|.++..+++.++  +|+|+|+|+.|++.|+++...+   ..++++..+|+.+     ++++
T Consensus        45 i~~l~~~~~~~VLDiGcG~G~~~~~la~~~~--~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~-----~~~~  117 (194)
T d1dusa_          45 VENVVVDKDDDILDLGCGYGVIGIALADEVK--STTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYE-----NVKD  117 (194)
T ss_dssp             HHHCCCCTTCEEEEETCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTT-----TCTT
T ss_pred             HHhCCcCCCCeEEEEeecCChhHHHHHhhcc--ccceeeeccccchhHHHHHHHhCCccceEEEEEcchhh-----hhcc
Confidence            3455667889999999999999999998865  5999999999999999976432   3568999999864     3567


Q ss_pred             CceeEEEE
Q 009871          145 SSIDIVTM  152 (523)
Q Consensus       145 ~~fD~V~~  152 (523)
                      ++||+|++
T Consensus       118 ~~fD~Ii~  125 (194)
T d1dusa_         118 RKYNKIIT  125 (194)
T ss_dssp             SCEEEEEE
T ss_pred             CCceEEEE
Confidence            89999999

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=99.16  E-value=9.3e-11  Score=109.63  Aligned_cols=170  Identities=17%  Similarity=0.090  Sum_probs=109.0

Q ss_pred             CCCCCCceEEEEEEcCceEEEEEecccccccCCCcccccchhHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcC
Q 009871          278 LSSFEDNEMIEVNLRDRSFKIEVLSKEYQHTCRSTGLMLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGS  357 (523)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~G~~~W~~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~  357 (523)
                      ...|-.+-+-...|.|.++.|.          ..+-.+..++..++ +++..........+|||+|||+|.++..++...
T Consensus        64 ~~~Pl~YI~g~~~F~~~~f~v~----------~~vlIPRpeTE~lv-~~~~~~~~~~~~~~vld~g~GsG~i~~~la~~~  132 (271)
T d1nv8a_          64 SGYPLHYILGEKEFMGLSFLVE----------EGVFVPRPETEELV-ELALELIRKYGIKTVADIGTGSGAIGVSVAKFS  132 (271)
T ss_dssp             TTCCHHHHHTEEEETTEEEECC----------TTSCCCCTTHHHHH-HHHHHHHHHHTCCEEEEESCTTSHHHHHHHHHS
T ss_pred             CCCChhhhcCcEEEeeeEEEEe----------cCccCchhhhhhhh-hhhhhhhccccccEEEEeeeeeehhhhhhhhcc
Confidence            3344445555677888777765          23334555555443 343332222244689999999998888887767


Q ss_pred             CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCccEEEEcccc------------CC
Q 009871          358 ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVS------------YI  425 (523)
Q Consensus       358 ~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~fD~Ii~~d~~------------y~  425 (523)
                      ..+|+++|+|+.+++.|++|++.|+..   .++.+...+|.+..      ....++||+|+++...            |.
T Consensus       133 ~~~v~a~Dis~~Al~~A~~Na~~~~~~---~~~~i~~~~~~~~~------~~~~~~fDlIVsNPPYI~~~~~l~~~~~~E  203 (271)
T d1nv8a_         133 DAIVFATDVSSKAVEIARKNAERHGVS---DRFFVRKGEFLEPF------KEKFASIEMILSNPPYVKSSAHLPKDVLFE  203 (271)
T ss_dssp             SCEEEEEESCHHHHHHHHHHHHHTTCT---TSEEEEESSTTGGG------GGGTTTCCEEEECCCCBCGGGSCTTSCCCS
T ss_pred             cceeeechhhhhHHHHHHHHHHHcCCC---ceeEEeeccccccc------ccccCcccEEEEcccccCcccccceeeeec
Confidence            779999999999999999999999886   56777777776531      1123689999998542            11


Q ss_pred             CC--------ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhHHHHHHHHcCC
Q 009871          426 PE--------AILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGF  478 (523)
Q Consensus       426 ~~--------~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~~~~~~~~gf  478 (523)
                      +.        .+.-.-+.+.++|         +|+|.+++-+..  ...+.+.+.+.+.||
T Consensus       204 P~~AL~gg~dGl~~~r~i~~~~L---------~~~G~l~~Eig~--~Q~~~v~~l~~~~g~  253 (271)
T d1nv8a_         204 PPEALFGGEDGLDFYREFFGRYD---------TSGKIVLMEIGE--DQVEELKKIVSDTVF  253 (271)
T ss_dssp             CHHHHBCTTTSCHHHHHHHHHCC---------CTTCEEEEECCT--TCHHHHTTTSTTCEE
T ss_pred             cccccccccchHHHHHHHHHHhc---------CCCCEEEEEECH--HHHHHHHHHHHhCCE
Confidence            11        1222223345566         679988876543  233445555556665

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.15  E-value=4.4e-10  Score=106.58  Aligned_cols=173  Identities=15%  Similarity=0.064  Sum_probs=106.8

Q ss_pred             eEEEEEEcCceEEEEEecccccccCCCcccccc--hhHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEE
Q 009871          285 EMIEVNLRDRSFKIEVLSKEYQHTCRSTGLMLW--ESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVV  362 (523)
Q Consensus       285 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~G~~~W--~~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~  362 (523)
                      +...+...|..+.|....      ...||.-.=  +.=..+.+.+...   .++++||||+||||+++..+++.|+ +|+
T Consensus        89 ~~~~v~e~gl~f~v~~~~------~~~tG~f~dqr~nr~~~~~~~~~~---~~~~rVLdlf~~tG~~sl~aa~~GA-~V~  158 (309)
T d2igta1          89 ETWPLSLLGVEFLGRFTA------FRHVGVFPEQIVHWEWLKNAVETA---DRPLKVLNLFGYTGVASLVAAAAGA-EVT  158 (309)
T ss_dssp             SEEEEEETTEEEEEECCS------SSCCSCCGGGHHHHHHHHHHHHHS---SSCCEEEEETCTTCHHHHHHHHTTC-EEE
T ss_pred             CeEEEEEeEEEEEEeccC------CCccccccchhHHHHHHHHHHhhc---cCCCeEEEecCCCcHHHHHHHhCCC-eEE
Confidence            355677788888777422      235554211  1111233444333   3788999999999998888777665 899


Q ss_pred             EEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCccEEEEccccCC----------CCChHHH
Q 009871          363 ATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYI----------PEAILPL  432 (523)
Q Consensus       363 ~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~fD~Ii~~d~~y~----------~~~~~~l  432 (523)
                      ++|.|+.+++.|++|++.|++..  .++.+...|..+.  +... .....+||+||....-|.          ...+..+
T Consensus       159 ~VD~s~~al~~a~~N~~ln~~~~--~~~~~i~~D~~~~--l~~~-~~~~~~fD~IilDPP~f~~~~~~~~~~~~~~~~~l  233 (309)
T d2igta1         159 HVDASKKAIGWAKENQVLAGLEQ--APIRWICEDAMKF--IQRE-ERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLM  233 (309)
T ss_dssp             EECSCHHHHHHHHHHHHHHTCTT--SCEEEECSCHHHH--HHHH-HHHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHH
T ss_pred             EEeChHHHHHHHHHhhhhhcccC--CcEEEEeCCHHHh--HHHH-hhcCCCCCEEEECCCcccccccchhHHHHHHHHHH
Confidence            99999999999999999998863  3455554332211  1111 123568999998655442          1245667


Q ss_pred             HHHHHHHhhccCCCCCCCCCcEEEEEEee-cCCChhHHHHHH----HHcCCEEE
Q 009871          433 FATAKELTASSNKSLREDQQPAFILCHIF-RQVDEPSMLSAA----TQCGFRLV  481 (523)
Q Consensus       433 ~~~l~~ll~~~~~~~~~~~~g~~~l~~~~-r~~~~~~~~~~~----~~~gf~~~  481 (523)
                      +..+..+|         .|+|.++++... ...+...+.+.+    ...|-.+.
T Consensus       234 ~~~~~~ll---------~~~g~~ll~t~~s~~~s~~~~~~~~~~~~~~ag~~v~  278 (309)
T d2igta1         234 LDICREIL---------SPKALGLVLTAYSIRASFYSMHELMRETMRGAGGVVA  278 (309)
T ss_dssp             HHHHHHTB---------CTTCCEEEEEECCTTSCHHHHHHHHHHHTTTSCSEEE
T ss_pred             HHHHHHhc---------CCCCCEEEEecCCCCCCHHHHHHHHHHHHHhcCCcce
Confidence            78888888         557765544333 234444444433    34565553

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.15  E-value=9.2e-11  Score=104.29  Aligned_cols=71  Identities=17%  Similarity=0.159  Sum_probs=56.4

Q ss_pred             CCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCC
Q 009871          333 IVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNE  412 (523)
Q Consensus       333 ~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~  412 (523)
                      .+.|++|||+|||+|.++..++..++.+|+++|+|+.+++.+++|+..         +.+...|+.+         + ++
T Consensus        46 dl~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~a~~~ar~N~~~---------~~~~~~D~~~---------l-~~  106 (197)
T d1ne2a_          46 NIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCGG---------VNFMVADVSE---------I-SG  106 (197)
T ss_dssp             SSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCTT---------SEEEECCGGG---------C-CC
T ss_pred             CCCCCEEEEeCCCCcHHHHHHHHcCCCcccccccCHHHHHHHHHcccc---------ccEEEEehhh---------c-CC
Confidence            358999999999999888888888888999999999999999998642         3444433322         1 46


Q ss_pred             CccEEEEccc
Q 009871          413 GFEVILGTDV  422 (523)
Q Consensus       413 ~fD~Ii~~d~  422 (523)
                      +||+|+++..
T Consensus       107 ~fD~Vi~NPP  116 (197)
T d1ne2a_         107 KYDTWIMNPP  116 (197)
T ss_dssp             CEEEEEECCC
T ss_pred             cceEEEeCcc
Confidence            8999999755

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=4e-11  Score=114.10  Aligned_cols=92  Identities=14%  Similarity=0.168  Sum_probs=60.2

Q ss_pred             hhhHHHHhhhhc----CCCCCeEEEECCCccccHHHHHhh----CCC--CEEEEEeCCHHHHHHHHhccccC--CCcEE-
Q 009871           61 HYLDKEWGRYFS----GAGRKDVLEVGCGAGNTIFPLIAA----YPD--VFVYACDFSPRAVNLVMTHKDFT--ETRVS-  127 (523)
Q Consensus        61 ~~l~~~~~~~~~----~~~~~~iLDiGcG~G~~~~~l~~~----~~~--~~v~gvD~S~~~l~~a~~~~~~~--~~~v~-  127 (523)
                      .|+...++..+.    ..+..+|||||||+|.++..+++.    +++  +.++|||+|+.|++.|+++....  ..++. 
T Consensus        22 ~~~~~~l~~~l~~l~~~~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~  101 (280)
T d1jqea_          22 EFMDKKLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKF  101 (280)
T ss_dssp             HHHHHTHHHHTTTTTTTCSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEE
T ss_pred             HHHHHHHHHHHHHhccCCCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccc
Confidence            455555555432    233447999999999998777553    343  46899999999999999875422  23333 


Q ss_pred             -EEEeeccCC--ccCCCCCCCceeEEEE
Q 009871          128 -TFVCDLISD--DLSRQISPSSIDIVTM  152 (523)
Q Consensus       128 -~~~~d~~~~--~~~~~~~~~~fD~V~~  152 (523)
                       +.+.++...  +...+.++++||+|++
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~fD~I~~  129 (280)
T d1jqea_         102 AWHKETSSEYQSRMLEKKELQKWDFIHM  129 (280)
T ss_dssp             EEECSCHHHHHHHHTTSSSCCCEEEEEE
T ss_pred             cchhhhhhhhcchhcccCCCCceeEEEE
Confidence             344433211  1122567899999999

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.14  E-value=6e-11  Score=106.71  Aligned_cols=76  Identities=14%  Similarity=0.149  Sum_probs=65.6

Q ss_pred             CCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhcccc-CCCcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871           75 GRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDF-TETRVSTFVCDLISDDLSRQISPSSIDIVTM  152 (523)
Q Consensus        75 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~-~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~  152 (523)
                      ....|||||||+|.++..+++.+|+..++|||+++.++..|.++... ...|+.++++|+..+  ...++++++|.|++
T Consensus        31 ~~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l--~~~~~~~~~~~i~i  107 (204)
T d1yzha1          31 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDL--TDYFEDGEIDRLYL  107 (204)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCG--GGTSCTTCCSEEEE
T ss_pred             CCCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHH--hhhccCCceehhcc
Confidence            45689999999999999999999999999999999999999886643 347899999999854  33478899999988

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=1.5e-10  Score=111.34  Aligned_cols=125  Identities=16%  Similarity=0.181  Sum_probs=85.2

Q ss_pred             hhcCCCCCeEEEECCCccccHHHHHhh-CCCCEEEEEeCCHHHHHHHHhcccc------------CCCcEEEEEeeccCC
Q 009871           70 YFSGAGRKDVLEVGCGAGNTIFPLIAA-YPDVFVYACDFSPRAVNLVMTHKDF------------TETRVSTFVCDLISD  136 (523)
Q Consensus        70 ~~~~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~v~gvD~S~~~l~~a~~~~~~------------~~~~v~~~~~d~~~~  136 (523)
                      ++...++.+|||+|||+|.++..|++. +|+++|+++|+++++++.|+++.+.            ...++.+.+.|+...
T Consensus        93 ~l~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di~~~  172 (324)
T d2b25a1          93 MMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGA  172 (324)
T ss_dssp             HHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCC
T ss_pred             HhCCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecchhhc
Confidence            345578999999999999999999988 7889999999999999999987531            246899999999754


Q ss_pred             ccCCCCCCCceeEEEEccccccceeeec-ceEEecCCeEEEee-CHHHHHHH---HHh--CCCcEEEE
Q 009871          137 DLSRQISPSSIDIVTMERLTGKDQKISE-NFYVRGDGTRAFYF-SNDFLTSL---FKE--NGFDVEEL  197 (523)
Q Consensus       137 ~~~~~~~~~~fD~V~~~~~~~~~~~~~~-~~~~~~~g~~~~~~-~~~~l~~l---l~~--~Gf~~~~~  197 (523)
                        ...+++..||.|++ ++..++..+.. .-.++++|.++.|. +.+++.++   |+.  .||..+++
T Consensus       173 --~~~~~~~~fD~V~L-D~p~P~~~l~~~~~~LKpGG~lv~~~P~i~Qv~~~~~~l~~~~~~f~~i~~  237 (324)
T d2b25a1         173 --TEDIKSLTFDAVAL-DMLNPHVTLPVFYPHLKHGGVCAVYVVNITQVIELLDGIRTCELALSCEKI  237 (324)
T ss_dssp             --C-------EEEEEE-CSSSTTTTHHHHGGGEEEEEEEEEEESSHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred             --ccccCCCCcceEee-cCcCHHHHHHHHHHhccCCCEEEEEeCCHHHHHHHHHHHHHcCCCceeeEE
Confidence              22346778999987 22122222111 11688899887654 66666555   443  35665544

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.11  E-value=1.5e-10  Score=105.03  Aligned_cols=106  Identities=18%  Similarity=0.064  Sum_probs=76.0

Q ss_pred             hcCCCCCCCCeEEEECCCccHHHHHHHhc-C-CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchh
Q 009871          328 ARNPTIVAGKKVLELGCGCGGICSMVAAG-S-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEA  405 (523)
Q Consensus       328 ~~~~~~~~~~~VLElG~G~G~l~~~~a~~-~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~  405 (523)
                      .+...+.+|.+|||||||+|.++..+|.. + ..+|+++|+++++++.+++|+...+..    ++.+..   ++....  
T Consensus        68 l~~l~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~----n~~~~~---~d~~~~--  138 (213)
T d1dl5a1          68 MEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIE----NVIFVC---GDGYYG--  138 (213)
T ss_dssp             HHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCC----SEEEEE---SCGGGC--
T ss_pred             HHhhhccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhccc----cccccc---CchHHc--
Confidence            34445678999999999999888888775 3 348999999999999999999987663    344432   222111  


Q ss_pred             hhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEE
Q 009871          406 IKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCH  459 (523)
Q Consensus       406 ~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~  459 (523)
                        ....++||+|++...+.+.  .    +.+.+.|         +|||.+++..
T Consensus       139 --~~~~~~fD~I~~~~~~~~~--p----~~l~~~L---------kpGG~lv~pv  175 (213)
T d1dl5a1         139 --VPEFSPYDVIFVTVGVDEV--P----ETWFTQL---------KEGGRVIVPI  175 (213)
T ss_dssp             --CGGGCCEEEEEECSBBSCC--C----HHHHHHE---------EEEEEEEEEB
T ss_pred             --cccccchhhhhhhccHHHh--H----HHHHHhc---------CCCcEEEEEE
Confidence              1124589999998766543  2    3455678         6799988754

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.08  E-value=2e-10  Score=104.85  Aligned_cols=80  Identities=16%  Similarity=0.204  Sum_probs=65.4

Q ss_pred             hcCCCCCeEEEECCCccccHHHHHhh-CCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeE
Q 009871           71 FSGAGRKDVLEVGCGAGNTIFPLIAA-YPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDI  149 (523)
Q Consensus        71 ~~~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~  149 (523)
                      ++..++.+|||+|||+|.++..|++. +++.+|+|+|+|+.|++.+++++.. ..++..+..|....... +.....+|+
T Consensus        69 l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~-~~~~~~i~~d~~~~~~~-~~~~~~vD~  146 (227)
T d1g8aa_          69 FPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEE-RRNIVPILGDATKPEEY-RALVPKVDV  146 (227)
T ss_dssp             CCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSS-CTTEEEEECCTTCGGGG-TTTCCCEEE
T ss_pred             cccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHh-cCCceEEEEECCCcccc-cccccceEE
Confidence            45678999999999999999999998 6889999999999999999987643 35678888888654322 234568999


Q ss_pred             EEE
Q 009871          150 VTM  152 (523)
Q Consensus       150 V~~  152 (523)
                      |++
T Consensus       147 i~~  149 (227)
T d1g8aa_         147 IFE  149 (227)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            988

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=1.6e-10  Score=105.56  Aligned_cols=77  Identities=17%  Similarity=0.066  Sum_probs=65.0

Q ss_pred             cCCCCCeEEEECCCccccHHHHHhh-CCCCEEEEEeCCHHHHHHHHhcccc------CCCcEEEEEeeccCCccCCCCCC
Q 009871           72 SGAGRKDVLEVGCGAGNTIFPLIAA-YPDVFVYACDFSPRAVNLVMTHKDF------TETRVSTFVCDLISDDLSRQISP  144 (523)
Q Consensus        72 ~~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~v~gvD~S~~~l~~a~~~~~~------~~~~v~~~~~d~~~~~~~~~~~~  144 (523)
                      ...++.+|||||||+|..+..|++. .+..+|+|+|+++++++.|+++...      ...++.+.++|....    +.+.
T Consensus        73 ~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~----~~~~  148 (224)
T d1i1na_          73 QLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMG----YAEE  148 (224)
T ss_dssp             TSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGC----CGGG
T ss_pred             ccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecccc----cchh
Confidence            3467899999999999999988887 6778999999999999999987642      235789999999866    5567


Q ss_pred             CceeEEEE
Q 009871          145 SSIDIVTM  152 (523)
Q Consensus       145 ~~fD~V~~  152 (523)
                      +.||+|++
T Consensus       149 ~~fD~I~~  156 (224)
T d1i1na_         149 APYDAIHV  156 (224)
T ss_dssp             CCEEEEEE
T ss_pred             hhhhhhhh
Confidence            88999998

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.04  E-value=1.6e-10  Score=102.77  Aligned_cols=67  Identities=22%  Similarity=0.229  Sum_probs=57.8

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM  152 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~  152 (523)
                      -.+++|||+|||+|.++..++..++ .+|+|||+++.+++.|+++.    .++++.++|+.++       +++||+|++
T Consensus        47 l~Gk~VLDlGcGtG~l~i~a~~~ga-~~V~~vDid~~a~~~ar~N~----~~~~~~~~D~~~l-------~~~fD~Vi~  113 (197)
T d1ne2a_          47 IGGRSVIDAGTGNGILACGSYLLGA-ESVTAFDIDPDAIETAKRNC----GGVNFMVADVSEI-------SGKYDTWIM  113 (197)
T ss_dssp             SBTSEEEEETCTTCHHHHHHHHTTB-SEEEEEESCHHHHHHHHHHC----TTSEEEECCGGGC-------CCCEEEEEE
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHcCC-CcccccccCHHHHHHHHHcc----ccccEEEEehhhc-------CCcceEEEe
Confidence            4688999999999999988877753 47999999999999999976    4689999999865       468999999

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=3.6e-10  Score=108.59  Aligned_cols=136  Identities=12%  Similarity=0.078  Sum_probs=89.6

Q ss_pred             CCCCCCCeEEEECCCccHHHHHHHhc-CC-CEEEEEcCChHHHHHHHHHHHhcCC-------CCCCCceEEEeeecCCCC
Q 009871          331 PTIVAGKKVLELGCGCGGICSMVAAG-SA-DLVVATDGDSIALDLLAQNVTANLK-------PPFLAKLITKRLEWGNRD  401 (523)
Q Consensus       331 ~~~~~~~~VLElG~G~G~l~~~~a~~-~~-~~V~~~D~~~~~l~~~~~n~~~n~~-------~~~~~~v~~~~ldw~~~~  401 (523)
                      .++.+|.+|||+|||+|.++..+|.. ++ .+|+++|+++++++.|++|++..+.       .....++.+...|..+..
T Consensus        94 l~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di~~~~  173 (324)
T d2b25a1          94 MDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGAT  173 (324)
T ss_dssp             HTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC
T ss_pred             hCCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecchhhcc
Confidence            35678999999999999999888875 43 4899999999999999999986421       122345666665554331


Q ss_pred             cchhhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhHHHHHHHH--cCCE
Q 009871          402 HIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQ--CGFR  479 (523)
Q Consensus       402 ~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~~~~~~~--~gf~  479 (523)
                      .     .+....||.|+. |+.    .....+..+.++|         +|||.+++..+. -.......+.++.  .||.
T Consensus       174 ~-----~~~~~~fD~V~L-D~p----~P~~~l~~~~~~L---------KpGG~lv~~~P~-i~Qv~~~~~~l~~~~~~f~  233 (324)
T d2b25a1         174 E-----DIKSLTFDAVAL-DML----NPHVTLPVFYPHL---------KHGGVCAVYVVN-ITQVIELLDGIRTCELALS  233 (324)
T ss_dssp             ------------EEEEEE-CSS----STTTTHHHHGGGE---------EEEEEEEEEESS-HHHHHHHHHHHHHHTCCEE
T ss_pred             c-----ccCCCCcceEee-cCc----CHHHHHHHHHHhc---------cCCCEEEEEeCC-HHHHHHHHHHHHHcCCCce
Confidence            1     233568999986 543    2334688888999         678887653321 1122345666664  4687


Q ss_pred             EEEEcCC
Q 009871          480 LVDKWPS  486 (523)
Q Consensus       480 ~~~~~~~  486 (523)
                      ..++.+.
T Consensus       234 ~i~~~E~  240 (324)
T d2b25a1         234 CEKISEV  240 (324)
T ss_dssp             EEEEECC
T ss_pred             eeEEEEE
Confidence            7777663

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=99.02  E-value=3.6e-10  Score=106.50  Aligned_cols=96  Identities=13%  Similarity=0.066  Sum_probs=72.7

Q ss_pred             CCCCeEEEECCCccHHHHHHHhcCC-CEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCC
Q 009871          334 VAGKKVLELGCGCGGICSMVAAGSA-DLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNE  412 (523)
Q Consensus       334 ~~~~~VLElG~G~G~l~~~~a~~~~-~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~  412 (523)
                      .++.+|||+|||+|.++..++..++ .+|+++|+|+.|++.++++.         .++.+...|..+.       ++.++
T Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~---------~~~~~~~~d~~~l-------~~~~~  146 (268)
T d1p91a_          83 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY---------PQVTFCVASSHRL-------PFSDT  146 (268)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC---------TTSEEEECCTTSC-------SBCTT
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhccc---------ccccceeeehhhc-------cCCCC
Confidence            3677999999999988888888764 58999999999999987642         2345544444332       35578


Q ss_pred             CccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee
Q 009871          413 GFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIF  461 (523)
Q Consensus       413 ~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~  461 (523)
                      +||+|++..++.+       ++.+.++|         +|||.++++...
T Consensus       147 sfD~v~~~~~~~~-------~~e~~rvL---------kpgG~l~~~~p~  179 (268)
T d1p91a_         147 SMDAIIRIYAPCK-------AEELARVV---------KPGGWVITATPG  179 (268)
T ss_dssp             CEEEEEEESCCCC-------HHHHHHHE---------EEEEEEEEEEEC
T ss_pred             CEEEEeecCCHHH-------HHHHHHHh---------CCCcEEEEEeeC
Confidence            9999998755433       46788999         679999998764

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=99.01  E-value=3.7e-10  Score=99.90  Aligned_cols=111  Identities=13%  Similarity=0.069  Sum_probs=82.5

Q ss_pred             CCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhh-hhcCC
Q 009871          334 VAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIK-EENNE  412 (523)
Q Consensus       334 ~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~-~~~~~  412 (523)
                      ..+.+||||.||||.+++.++++|+.+|+++|.+..+++.+++|++..+...  ....+...+.     ...+. .....
T Consensus        42 ~~~~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~~~ik~Ni~~l~~~~--~~~~~~~~d~-----~~~l~~~~~~~  114 (183)
T d2ifta1          42 IHQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSS--EQAEVINQSS-----LDFLKQPQNQP  114 (183)
T ss_dssp             HTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCT--TTEEEECSCH-----HHHTTSCCSSC
T ss_pred             cccceEeecccCccceeeeeeeecceeeEEeecccchhhhHhhHHhhhcccc--cccccccccc-----cccccccccCC
Confidence            3778999999999999999999999999999999999999999999876542  2233332211     11111 11234


Q ss_pred             CccEEEEccccCCCCChHHHHHHHHH--HhhccCCCCCCCCCcEEEEEEee
Q 009871          413 GFEVILGTDVSYIPEAILPLFATAKE--LTASSNKSLREDQQPAFILCHIF  461 (523)
Q Consensus       413 ~fD~Ii~~d~~y~~~~~~~l~~~l~~--ll~~~~~~~~~~~~g~~~l~~~~  461 (523)
                      +||+|+. |..|.......++..+..  +|         +++|.+++-+..
T Consensus       115 ~fDlIFl-DPPY~~~~~~~~l~~l~~~~~L---------~~~~liiiE~~~  155 (183)
T d2ifta1         115 HFDVVFL-DPPFHFNLAEQAISLLCENNWL---------KPNALIYVETEK  155 (183)
T ss_dssp             CEEEEEE-CCCSSSCHHHHHHHHHHHTTCE---------EEEEEEEEEEES
T ss_pred             cccEEEe-chhHhhhhHHHHHHHHHHhCCc---------CCCcEEEEEecC
Confidence            7999987 888998888888888875  56         457777776544

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.01  E-value=3.6e-10  Score=101.48  Aligned_cols=71  Identities=21%  Similarity=0.275  Sum_probs=61.6

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM  152 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~  152 (523)
                      ..+.+|||+|||+|.++..++.+++ .+|+|+|+|+.+++.|+++......+.+++++|+...       ++.||+|++
T Consensus        45 l~g~~vLDlg~GtG~l~i~a~~~g~-~~v~~vdi~~~~~~~a~~N~~~~~~~~~~~~~d~~~~-------~~~fD~Vi~  115 (201)
T d1wy7a1          45 IEGKVVADLGAGTGVLSYGALLLGA-KEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEF-------NSRVDIVIM  115 (201)
T ss_dssp             STTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGC-------CCCCSEEEE
T ss_pred             CCCCEEEECcCcchHHHHHHHHcCC-CEEEEEcCcHHHHHHHHHHHHHcCCCceEEECchhhh-------CCcCcEEEE
Confidence            4688999999999999988887743 5899999999999999998877677889999998754       467999999

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.01  E-value=4.6e-09  Score=94.12  Aligned_cols=129  Identities=11%  Similarity=0.018  Sum_probs=91.3

Q ss_pred             CCeEEEECCCccHHHHHHHhcCC-CEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCc
Q 009871          336 GKKVLELGCGCGGICSMVAAGSA-DLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGF  414 (523)
Q Consensus       336 ~~~VLElG~G~G~l~~~~a~~~~-~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~f  414 (523)
                      +..|||||||+|.....+|+..+ ..++|+|+++.++..+.+++..+++.    ++.+...|-.   .+  ...++++++
T Consensus        30 ~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~----Nv~~~~~Da~---~l--~~~~~~~~~  100 (204)
T d2fcaa1          30 NPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQ----NVKLLNIDAD---TL--TDVFEPGEV  100 (204)
T ss_dssp             CCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCS----SEEEECCCGG---GH--HHHCCTTSC
T ss_pred             CceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhcc----Cchhcccchh---hh--hcccCchhh
Confidence            34799999999988888888754 58999999999999999999988763    5666544321   11  123567899


Q ss_pred             cEEEEccccCCCCC--------hHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhHHHHHHHHcCCEEEEE
Q 009871          415 EVILGTDVSYIPEA--------ILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLVDK  483 (523)
Q Consensus       415 D~Ii~~d~~y~~~~--------~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~~~~~~~~gf~~~~~  483 (523)
                      |.|+..-...++..        -+.+++.+.++|         +|||.++++.-.... .+...+.+.+.++.....
T Consensus       101 d~v~i~fp~P~~k~~h~k~Rl~~~~~l~~~~r~L---------kpgG~l~i~TD~~~y-~~~~~~~~~~~~~~~~~~  167 (204)
T d2fcaa1         101 KRVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVM---------GKGGSIHFKTDNRGL-FEYSLKSFSEYGLLLTYV  167 (204)
T ss_dssp             CEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHH---------TTSCEEEEEESCHHH-HHHHHHHHHHHTCEEEEE
T ss_pred             hccccccccccchhhhcchhhhHHHHHHHHHHhC---------CCCcEEEEEECChHH-HHHHHHHHHHCCCccccC
Confidence            99887654444332        258999999999         789999987522111 123455666677765544

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=4.3e-10  Score=102.73  Aligned_cols=107  Identities=14%  Similarity=0.051  Sum_probs=75.1

Q ss_pred             CCCCCCeEEEECCCccHHHHHHHhc-C-CCEEEEEcCChHHHHHHHHHHHhcCCCC-CCCceEEEeeecCCCCcchhhhh
Q 009871          332 TIVAGKKVLELGCGCGGICSMVAAG-S-ADLVVATDGDSIALDLLAQNVTANLKPP-FLAKLITKRLEWGNRDHIEAIKE  408 (523)
Q Consensus       332 ~~~~~~~VLElG~G~G~l~~~~a~~-~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~-~~~~v~~~~ldw~~~~~~~~~~~  408 (523)
                      .+.+|.+|||+|||+|..+..+|.. + ..+|+++|+++++++.+++|+...+... ....+.+...|-...       .
T Consensus        73 ~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~-------~  145 (224)
T d1i1na_          73 QLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMG-------Y  145 (224)
T ss_dssp             TSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGC-------C
T ss_pred             ccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecccc-------c
Confidence            5568999999999999888777775 4 4589999999999999999998765531 123444443332111       1


Q ss_pred             hcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEe
Q 009871          409 ENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHI  460 (523)
Q Consensus       409 ~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~  460 (523)
                      ....+||+|+....+.+.      ...+.+.|         +|||++++...
T Consensus       146 ~~~~~fD~I~~~~~~~~i------p~~l~~~L---------kpGG~LV~pv~  182 (224)
T d1i1na_         146 AEEAPYDAIHVGAAAPVV------PQALIDQL---------KPGGRLILPVG  182 (224)
T ss_dssp             GGGCCEEEEEECSBBSSC------CHHHHHTE---------EEEEEEEEEES
T ss_pred             chhhhhhhhhhhcchhhc------CHHHHhhc---------CCCcEEEEEEc
Confidence            124689999988665542      23456778         67999988543

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=1.1e-09  Score=101.76  Aligned_cols=79  Identities=11%  Similarity=0.076  Sum_probs=62.5

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC--CCcEEEEEeeccCCccC--CCCCCCceeE
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISDDLS--RQISPSSIDI  149 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~~~--~~~~~~~fD~  149 (523)
                      .+..+|||+|||+|..+..|+.+.|+++|+|+|+|+++++.|+++...+  ..++.+.+.+....-+.  ....+++||+
T Consensus        60 ~~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD~  139 (250)
T d2h00a1          60 STLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDF  139 (250)
T ss_dssp             CCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSE
T ss_pred             cccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCceeE
Confidence            3456899999999999999999989999999999999999999987544  35678777665432111  1124568999


Q ss_pred             EEE
Q 009871          150 VTM  152 (523)
Q Consensus       150 V~~  152 (523)
                      |+|
T Consensus       140 ivs  142 (250)
T d2h00a1         140 CMC  142 (250)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            999

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.98  E-value=2.7e-09  Score=99.46  Aligned_cols=113  Identities=19%  Similarity=0.242  Sum_probs=83.3

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC--CCcEEEEEeeccCCccCCCCCCCceeEEE
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISDDLSRQISPSSIDIVT  151 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~~~~~~~~~~fD~V~  151 (523)
                      .++.+|||+|||+|.++..+++++ .++|+|+|+||.+++.++++...+  ..+++++++|+.+.     .+.+.||.|+
T Consensus       106 ~~g~~VlD~~aG~G~~~l~~a~~~-~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~-----~~~~~~D~Ii  179 (260)
T d2frna1         106 KPDELVVDMFAGIGHLSLPIAVYG-KAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDF-----PGENIADRIL  179 (260)
T ss_dssp             CTTCEEEETTCTTTTTHHHHHHHT-CCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTC-----CCCSCEEEEE
T ss_pred             CCccEEEECcceEcHHHHHHHHhC-CcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHh-----ccCCCCCEEE
Confidence            478999999999999999999885 468999999999999999987644  35799999999865     2357899999


Q ss_pred             E------ccccccceeeecceEEecCCeEEEe-e---------CHHHHHHHHHhCCCcEEEE
Q 009871          152 M------ERLTGKDQKISENFYVRGDGTRAFY-F---------SNDFLTSLFKENGFDVEEL  197 (523)
Q Consensus       152 ~------~~~~~~~~~~~~~~~~~~~g~~~~~-~---------~~~~l~~ll~~~Gf~~~~~  197 (523)
                      +      ..++.....     .++++|...++ +         ..+.+.++....|+.+..+
T Consensus       180 ~~~p~~~~~~l~~a~~-----~l~~gG~lh~~~~~~~~~~~~~~~e~~~~~~~~~g~~v~~~  236 (260)
T d2frna1         180 MGYVVRTHEFIPKALS-----IAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDVEKL  236 (260)
T ss_dssp             ECCCSSGGGGHHHHHH-----HEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEEEEE
T ss_pred             ECCCCchHHHHHHHHh-----hcCCCCEEEEEeccccccchhhHHHHHHHHHHHcCCceEEE
Confidence            8      222111111     35566655332 1         2456778888899987444

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=98.96  E-value=3.9e-10  Score=102.51  Aligned_cols=104  Identities=15%  Similarity=0.144  Sum_probs=72.8

Q ss_pred             HhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhh
Q 009871          327 LARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAI  406 (523)
Q Consensus       327 l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~  406 (523)
                      +.+..++.+|.+|||+|||+|.++..++..+ .+|+++|.++.+++.|++|....      .++.+...|-...  .   
T Consensus        62 ml~~L~l~~g~~VLdIG~GsGy~ta~La~l~-~~V~aiE~~~~~~~~A~~~~~~~------~nv~~~~~d~~~g--~---  129 (224)
T d1vbfa_          62 MLDELDLHKGQKVLEIGTGIGYYTALIAEIV-DKVVSVEINEKMYNYASKLLSYY------NNIKLILGDGTLG--Y---  129 (224)
T ss_dssp             HHHHTTCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHHHHHHHHHTTC------SSEEEEESCGGGC--C---
T ss_pred             HHHHhhhcccceEEEecCCCCHHHHHHHHHh-cccccccccHHHHHHHHHHHhcc------cccccccCchhhc--c---
Confidence            4444566789999999999998888777764 68999999999999999886542      3556554432211  0   


Q ss_pred             hhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEE
Q 009871          407 KEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCH  459 (523)
Q Consensus       407 ~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~  459 (523)
                        ...++||.|+..-.+.+  .    ...+.+.|         ++||++++..
T Consensus       130 --~~~~pfD~Iiv~~a~~~--i----p~~l~~qL---------k~GGrLV~pv  165 (224)
T d1vbfa_         130 --EEEKPYDRVVVWATAPT--L----LCKPYEQL---------KEGGIMILPI  165 (224)
T ss_dssp             --GGGCCEEEEEESSBBSS--C----CHHHHHTE---------EEEEEEEEEE
T ss_pred             --hhhhhHHHHHhhcchhh--h----hHHHHHhc---------CCCCEEEEEE
Confidence              11368999998755432  2    23455678         6799988754

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.94  E-value=9.9e-09  Score=91.88  Aligned_cols=130  Identities=15%  Similarity=0.117  Sum_probs=93.5

Q ss_pred             CeEEEECCCccHHHHHHHhcCC-CEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCcc
Q 009871          337 KKVLELGCGCGGICSMVAAGSA-DLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFE  415 (523)
Q Consensus       337 ~~VLElG~G~G~l~~~~a~~~~-~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~fD  415 (523)
                      ..|||||||+|.....+|+..+ ..++|+|+++.++..+..++..+++.    ++.+...|..+   +.  ..+++.++|
T Consensus        33 plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~----Ni~~~~~da~~---l~--~~~~~~~~~  103 (204)
T d1yzha1          33 PIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVP----NIKLLWVDGSD---LT--DYFEDGEID  103 (204)
T ss_dssp             CEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCS----SEEEEECCSSC---GG--GTSCTTCCS
T ss_pred             CeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccc----cceeeecCHHH---Hh--hhccCCcee
Confidence            4799999999998888888854 58999999999999999999887763    56666555432   21  134567999


Q ss_pred             EEEEccccCCCC--------ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhHHHHHHHHcCCEEEEEcC
Q 009871          416 VILGTDVSYIPE--------AILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLVDKWP  485 (523)
Q Consensus       416 ~Ii~~d~~y~~~--------~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~~~~~~~~gf~~~~~~~  485 (523)
                      .|+..-.--++.        .-+.+++.+.++|         +|||.+++++-.... .....+...+.++.....|.
T Consensus       104 ~i~i~fPdPw~K~~h~krRl~~~~~l~~~~~~L---------kpgG~l~i~TD~~~Y-~~~~le~~~~~~~~~~~~~~  171 (204)
T d1yzha1         104 RLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRIL---------PENGEIHFKTDNRGL-FEYSLVSFSQYGMKLNGVWL  171 (204)
T ss_dssp             EEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHS---------CTTCEEEEEESCHHH-HHHHHHHHHHHTCEEEEEES
T ss_pred             hhcccccccccchhhhhhhhhHHHHHHHHHHhC---------CCCcEEEEEECCccH-HHHHHHHHHHCCcccccccc
Confidence            998763333222        2378999999999         789999887532111 12345666678888877775

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.92  E-value=5.2e-10  Score=101.03  Aligned_cols=106  Identities=13%  Similarity=0.069  Sum_probs=77.1

Q ss_pred             hcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhh
Q 009871          328 ARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIK  407 (523)
Q Consensus       328 ~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~  407 (523)
                      .+..++.++.+|||||||||..+..++.....+|+++|.++.+++.+++|+...+.    .++.+...|.....      
T Consensus        71 l~~L~l~~g~~VLeIGsGsGY~taila~l~g~~V~~ie~~~~l~~~a~~~l~~~g~----~nv~~~~gd~~~g~------  140 (215)
T d1jg1a_          71 LEIANLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGV----KNVHVILGDGSKGF------  140 (215)
T ss_dssp             HHHHTCCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTC----CSEEEEESCGGGCC------
T ss_pred             HHhhccCccceEEEecCCCChhHHHHHHhhCceeEEEeccHHHHHHHHHHHHHcCC----ceeEEEECccccCC------
Confidence            33445678999999999999888888876445799999999999999999998776    46666655543321      


Q ss_pred             hhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEE
Q 009871          408 EENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCH  459 (523)
Q Consensus       408 ~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~  459 (523)
                       ....+||.|+....+..  ....    +.+.|         ++||++++..
T Consensus       141 -~~~~pfD~Iiv~~a~~~--ip~~----l~~qL---------~~gGrLv~pv  176 (215)
T d1jg1a_         141 -PPKAPYDVIIVTAGAPK--IPEP----LIEQL---------KIGGKLIIPV  176 (215)
T ss_dssp             -GGGCCEEEEEECSBBSS--CCHH----HHHTE---------EEEEEEEEEE
T ss_pred             -cccCcceeEEeeccccc--CCHH----HHHhc---------CCCCEEEEEE
Confidence             12468999998765543  2333    44567         5699888754

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=1e-09  Score=105.71  Aligned_cols=74  Identities=19%  Similarity=0.157  Sum_probs=59.9

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccc-cCCCcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKD-FTETRVSTFVCDLISDDLSRQISPSSIDIVTM  152 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~-~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~  152 (523)
                      .++++|||||||+|.++..+++.++ .+|+|+|.|+.|+..++.... ....++.++++|+.++    ++++++||+|++
T Consensus        34 ~~~~~VLDiGcG~G~lsl~aa~~Ga-~~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~~~l----~~~~~~~D~Ivs  108 (311)
T d2fyta1          34 FKDKVVLDVGCGTGILSMFAAKAGA-KKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEV----HLPVEKVDVIIS  108 (311)
T ss_dssp             TTTCEEEEETCTTSHHHHHHHHTTC-SEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTS----CCSCSCEEEEEE
T ss_pred             CCcCEEEEECCCCCHHHHHHHHcCC-CEEEEEeCHHHHHHHHHHHHHhCCCccceEEEeeHHHh----cCccccceEEEE
Confidence            4678999999999999999888853 479999999998754443322 2347899999999987    567789999999

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=8.8e-10  Score=106.78  Aligned_cols=80  Identities=11%  Similarity=0.134  Sum_probs=64.2

Q ss_pred             hhhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhcccc----------CCCcEEEEEeeccCCcc
Q 009871           69 RYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDF----------TETRVSTFVCDLISDDL  138 (523)
Q Consensus        69 ~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~----------~~~~v~~~~~d~~~~~~  138 (523)
                      +.+...++.+|||||||+|.++..+++.++..+++|||+|+.|++.|+++...          ...+++++++|+.+.  
T Consensus       145 ~~~~l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~~~~--  222 (328)
T d1nw3a_         145 DEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSE--  222 (328)
T ss_dssp             HHSCCCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCTTSH--
T ss_pred             HHcCCCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECccccc--
Confidence            34455788999999999999999999888777899999999999999875421          346799999999876  


Q ss_pred             CCCCCCCce--eEEEE
Q 009871          139 SRQISPSSI--DIVTM  152 (523)
Q Consensus       139 ~~~~~~~~f--D~V~~  152 (523)
                        ++.+..|  |+|++
T Consensus       223 --~~~~~~~~advi~~  236 (328)
T d1nw3a_         223 --EWRERIANTSVIFV  236 (328)
T ss_dssp             --HHHHHHHHCSEEEE
T ss_pred             --ccccccCcceEEEE
Confidence              4444444  67776

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=98.86  E-value=3.8e-09  Score=95.83  Aligned_cols=77  Identities=14%  Similarity=0.106  Sum_probs=64.1

Q ss_pred             hhhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCcee
Q 009871           69 RYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSID  148 (523)
Q Consensus        69 ~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD  148 (523)
                      +.+...++.+|||||||+|..+..|++.  ..+|+++|+++.+++.|+++... ..++.++++|....    ....+.||
T Consensus        64 ~~L~l~~g~~VLdIG~GsGy~ta~La~l--~~~V~aiE~~~~~~~~A~~~~~~-~~nv~~~~~d~~~g----~~~~~pfD  136 (224)
T d1vbfa_          64 DELDLHKGQKVLEIGTGIGYYTALIAEI--VDKVVSVEINEKMYNYASKLLSY-YNNIKLILGDGTLG----YEEEKPYD  136 (224)
T ss_dssp             HHTTCCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHHHHHTT-CSSEEEEESCGGGC----CGGGCCEE
T ss_pred             HHhhhcccceEEEecCCCCHHHHHHHHH--hcccccccccHHHHHHHHHHHhc-ccccccccCchhhc----chhhhhHH
Confidence            4556688999999999999999988888  46799999999999999987543 36899999998754    23457799


Q ss_pred             EEEE
Q 009871          149 IVTM  152 (523)
Q Consensus       149 ~V~~  152 (523)
                      +|++
T Consensus       137 ~Iiv  140 (224)
T d1vbfa_         137 RVVV  140 (224)
T ss_dssp             EEEE
T ss_pred             HHHh
Confidence            9988

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.85  E-value=2.7e-09  Score=103.50  Aligned_cols=72  Identities=19%  Similarity=0.276  Sum_probs=59.4

Q ss_pred             CCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhcccc--CCCcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871           75 GRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDF--TETRVSTFVCDLISDDLSRQISPSSIDIVTM  152 (523)
Q Consensus        75 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~--~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~  152 (523)
                      ++++|||||||+|.++..+++.+ ..+|+|+|.|+ |+..|+++...  ...++.++++|+.++    ++++++||+|++
T Consensus        38 ~~~~VLDlGcGtG~ls~~aa~~G-a~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~~~l----~~~~~~~D~i~s  111 (328)
T d1g6q1_          38 KDKIVLDVGCGTGILSMFAAKHG-AKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLEDV----HLPFPKVDIIIS  111 (328)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTC-CSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTS----CCSSSCEEEEEE
T ss_pred             CcCEEEEeCCCCCHHHHHHHHhC-CCEEEEEeCCH-HHHHHHHHHHHhCccccceEEEeehhhc----cCcccceeEEEE
Confidence            57899999999999998888875 34799999997 66777775432  246899999999987    667889999999

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.85  E-value=2.1e-09  Score=95.16  Aligned_cols=91  Identities=15%  Similarity=0.236  Sum_probs=75.9

Q ss_pred             hhHHHHhhhhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCcc-CC
Q 009871           62 YLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDL-SR  140 (523)
Q Consensus        62 ~l~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~-~~  140 (523)
                      .+.++.-+++.+.++..+||++||+|.++..+++.+|+++|+|+|.++.|++.|+++......++.+++++..+++. ..
T Consensus        10 Vll~evi~~l~~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f~~~~~~~~   89 (192)
T d1m6ya2          10 VMVREVIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLK   89 (192)
T ss_dssp             TTHHHHHHHHCCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHH
T ss_pred             hHHHHHHHhhCCCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhccccccccchhHHHhhHHHHHH
Confidence            46777777787788999999999999999999999999999999999999999999876556789999998875421 01


Q ss_pred             CCCCCceeEEEE
Q 009871          141 QISPSSIDIVTM  152 (523)
Q Consensus       141 ~~~~~~fD~V~~  152 (523)
                      .+..++||.|+.
T Consensus        90 ~~~~~~vdgIl~  101 (192)
T d1m6ya2          90 TLGIEKVDGILM  101 (192)
T ss_dssp             HTTCSCEEEEEE
T ss_pred             HcCCCCcceeee
Confidence            234578999987

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.83  E-value=1.5e-09  Score=104.66  Aligned_cols=72  Identities=18%  Similarity=0.155  Sum_probs=57.5

Q ss_pred             CCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccc--cCCCcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871           75 GRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKD--FTETRVSTFVCDLISDDLSRQISPSSIDIVTM  152 (523)
Q Consensus        75 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~--~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~  152 (523)
                      ++++|||||||+|.++..+++.++ .+|+|+|.|+.+ ..|++...  ....++.++++|+.++    +++.++||+|++
T Consensus        33 ~~~~VLDiGcG~G~ls~~aa~~Ga-~~V~avd~s~~~-~~a~~~~~~n~~~~~v~~~~~~~~~~----~~~~~~~D~ivs  106 (316)
T d1oria_          33 KDKVVLDVGSGTGILCMFAAKAGA-RKVIGIECSSIS-DYAVKIVKANKLDHVVTIIKGKVEEV----ELPVEKVDIIIS  106 (316)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTC-SEEEEEECSTTH-HHHHHHHHHTTCTTTEEEEESCTTTC----CCSSSCEEEEEE
T ss_pred             CcCEEEEEecCCcHHHHHHHHhCC-CEEEEEcCcHHH-hhhhhHHHHhCCccccceEeccHHHc----ccccceeEEEee
Confidence            578999999999999998888753 479999999865 44444332  2246799999999987    567789999998

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.80  E-value=4.2e-09  Score=103.61  Aligned_cols=117  Identities=15%  Similarity=0.116  Sum_probs=77.2

Q ss_pred             cCCCCCCCCeEEEECCCccHHHHHHHhc-CCCEEEEEcCChHHHHHHHHHHHhcCCC-----CCCCceEEE-eeecCCCC
Q 009871          329 RNPTIVAGKKVLELGCGCGGICSMVAAG-SADLVVATDGDSIALDLLAQNVTANLKP-----PFLAKLITK-RLEWGNRD  401 (523)
Q Consensus       329 ~~~~~~~~~~VLElG~G~G~l~~~~a~~-~~~~V~~~D~~~~~l~~~~~n~~~n~~~-----~~~~~v~~~-~ldw~~~~  401 (523)
                      +...+.+|.+|||||||+|.++..+|+. ++++|+|+|+++.+++.|++++...+..     .....+... ..+..+.+
T Consensus       210 ~~l~Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~~f~~~~  289 (406)
T d1u2za_         210 QQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNN  289 (406)
T ss_dssp             HHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCH
T ss_pred             HHhCCCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeeechhhcc
Confidence            3445678999999999999888888876 6679999999999999999988754210     011112111 11111111


Q ss_pred             cchhhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEE
Q 009871          402 HIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCH  459 (523)
Q Consensus       402 ~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~  459 (523)
                      ..    ...-..+|+|+.+..+ +...+...+..+.+.|         +|||.++++.
T Consensus       290 ~~----d~~~~~adVV~inn~~-f~~~l~~~L~ei~r~L---------KPGGrIVs~~  333 (406)
T d1u2za_         290 RV----AELIPQCDVILVNNFL-FDEDLNKKVEKILQTA---------KVGCKIISLK  333 (406)
T ss_dssp             HH----HHHGGGCSEEEECCTT-CCHHHHHHHHHHHTTC---------CTTCEEEESS
T ss_pred             cc----ccccccceEEEEeccc-CchHHHHHHHHHHHhc---------CCCcEEEEec
Confidence            11    1112367899886544 4556777888888888         7799988753

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=3.5e-09  Score=102.42  Aligned_cols=116  Identities=11%  Similarity=0.086  Sum_probs=78.9

Q ss_pred             hcCCCCCCCCeEEEECCCccHHHHHHHhc-CCCEEEEEcCChHHHHHHHHHHHhcCC-----CCCCCceEEEeeecCCCC
Q 009871          328 ARNPTIVAGKKVLELGCGCGGICSMVAAG-SADLVVATDGDSIALDLLAQNVTANLK-----PPFLAKLITKRLEWGNRD  401 (523)
Q Consensus       328 ~~~~~~~~~~~VLElG~G~G~l~~~~a~~-~~~~V~~~D~~~~~l~~~~~n~~~n~~-----~~~~~~v~~~~ldw~~~~  401 (523)
                      .+...+.++.+|||||||+|.++..+|+. ++.+|+|+|+++.+++.|+.++.....     .....++.+...|..+..
T Consensus       144 ~~~~~l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~~~~~  223 (328)
T d1nw3a_         144 IDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEE  223 (328)
T ss_dssp             HHHSCCCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCTTSHH
T ss_pred             HHHcCCCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECcccccc
Confidence            34445668899999999999888888776 566899999999999999887654311     011246777666654421


Q ss_pred             cchhhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEE
Q 009871          402 HIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILC  458 (523)
Q Consensus       402 ~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~  458 (523)
                       ...  .+  ...|+|+++...+ ...+...+..+.+.|         +|||.+++.
T Consensus       224 -~~~--~~--~~advi~~~~~~f-~~~~~~~l~e~~r~L---------KpGg~iv~~  265 (328)
T d1nw3a_         224 -WRE--RI--ANTSVIFVNNFAF-GPEVDHQLKERFANM---------KEGGRIVSS  265 (328)
T ss_dssp             -HHH--HH--HHCSEEEECCTTT-CHHHHHHHHHHHTTC---------CTTCEEEES
T ss_pred             -ccc--cc--CcceEEEEcceec-chHHHHHHHHHHHhC---------CCCcEEEEe
Confidence             110  01  1358888865554 445666777777778         779998764

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=98.75  E-value=2.1e-09  Score=103.41  Aligned_cols=77  Identities=17%  Similarity=0.067  Sum_probs=61.5

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCC-CcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE-TRVSTFVCDLISDDLSRQISPSSIDIVTM  152 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~V~~  152 (523)
                      .++.+|||++||+|.++.++++.  +.+|+++|+|+.+++.|+++...++ .+++++++|+.+..-......++||+|++
T Consensus       144 ~~g~rVLDl~~gtG~~s~~~a~g--~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~  221 (318)
T d1wxxa2         144 FRGERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVL  221 (318)
T ss_dssp             CCEEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred             hCCCeeeccCCCCcHHHHHHHhc--CCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEE
Confidence            46889999999999999998865  5679999999999999999876554 57999999986420000223578999999

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.74  E-value=1.3e-09  Score=99.18  Aligned_cols=107  Identities=10%  Similarity=0.053  Sum_probs=72.1

Q ss_pred             CCCCCCeEEEECCCccHHHHHHHhc----C---CCEEEEEcCChHHHHHHHHHHHhcCCC-CCCCceEEEeeecCCCCcc
Q 009871          332 TIVAGKKVLELGCGCGGICSMVAAG----S---ADLVVATDGDSIALDLLAQNVTANLKP-PFLAKLITKRLEWGNRDHI  403 (523)
Q Consensus       332 ~~~~~~~VLElG~G~G~l~~~~a~~----~---~~~V~~~D~~~~~l~~~~~n~~~n~~~-~~~~~v~~~~ldw~~~~~~  403 (523)
                      ++.++.+|||+|||||..+..++..    |   ..+|+++|.++++++.+++|+..+... ....++.+...|-.+..  
T Consensus        77 ~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d~~~~~--  154 (223)
T d1r18a_          77 HLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGY--  154 (223)
T ss_dssp             TCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCC--
T ss_pred             ccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEeccccccc--
Confidence            5668999999999999887777664    2   248999999999999999997654321 01134555554432211  


Q ss_pred             hhhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEe
Q 009871          404 EAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHI  460 (523)
Q Consensus       404 ~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~  460 (523)
                           ...++||.|+..-.+...  .    ..+.+.|         ++||++++...
T Consensus       155 -----~~~~~fD~Iiv~~a~~~~--p----~~l~~~L---------k~gG~lV~pvg  191 (223)
T d1r18a_         155 -----PPNAPYNAIHVGAAAPDT--P----TELINQL---------ASGGRLIVPVG  191 (223)
T ss_dssp             -----GGGCSEEEEEECSCBSSC--C----HHHHHTE---------EEEEEEEEEES
T ss_pred             -----ccccceeeEEEEeechhc--h----HHHHHhc---------CCCcEEEEEEe
Confidence                 124589999987555432  2    3456777         56999877543

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.73  E-value=4.2e-09  Score=89.99  Aligned_cols=75  Identities=13%  Similarity=0.151  Sum_probs=61.3

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC--CCcEEEEEeeccCCccCCCCCCCceeEEE
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISDDLSRQISPSSIDIVT  151 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~~~~~~~~~~fD~V~  151 (523)
                      -++.+|||+|||+|.++..++.++. .+|+++|.++.+++.++++....  ..+++++++|+... +  ....++||+|+
T Consensus        13 ~~g~~vlDl~~GtG~~~iea~~rga-~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~-l--~~~~~~fDiIf   88 (152)
T d2esra1          13 FNGGRVLDLFAGSGGLAIEAVSRGM-SAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERA-I--DCLTGRFDLVF   88 (152)
T ss_dssp             CCSCEEEEETCTTCHHHHHHHHTTC-CEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHH-H--HHBCSCEEEEE
T ss_pred             CCCCeEEEcCCccCHHHHHHHHhCc-ceeeeehhchhhhhhhhhhhhhcccccchhhhccccccc-c--cccccccceeE
Confidence            3688999999999999998888854 48999999999999999987543  35699999998752 1  23467899997


Q ss_pred             E
Q 009871          152 M  152 (523)
Q Consensus       152 ~  152 (523)
                      +
T Consensus        89 ~   89 (152)
T d2esra1          89 L   89 (152)
T ss_dssp             E
T ss_pred             e
Confidence            7

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.70  E-value=5e-09  Score=101.10  Aligned_cols=78  Identities=22%  Similarity=0.156  Sum_probs=61.9

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCC--CcEEEEEeeccCCccCCCCCCCceeEEE
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQISPSSIDIVT  151 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~V~  151 (523)
                      .++.+|||+|||+|..+..++..+ ..+|+++|+|+.+++.|+++...++  .+++++++|+.+.-...+....+||+|+
T Consensus       144 ~~g~~VLDl~~g~G~~si~~a~~g-a~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD~Vi  222 (324)
T d2as0a2         144 QPGDRVLDVFTYTGGFAIHAAIAG-ADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVV  222 (324)
T ss_dssp             CTTCEEEETTCTTTHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCCeeecccCcccchhhhhhhcC-CcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCCCchh
Confidence            468899999999999999998875 3489999999999999999876543  4789999998642000022457899999


Q ss_pred             E
Q 009871          152 M  152 (523)
Q Consensus       152 ~  152 (523)
                      +
T Consensus       223 ~  223 (324)
T d2as0a2         223 L  223 (324)
T ss_dssp             E
T ss_pred             c
Confidence            9

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.68  E-value=2.8e-08  Score=91.53  Aligned_cols=112  Identities=15%  Similarity=0.242  Sum_probs=76.7

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEEE-
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM-  152 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~-  152 (523)
                      ....+|||||||+|..+..+++++|+.+++.+|+ |..++.+.     ...+++++.+|+.+     +.|  ..|++++ 
T Consensus        80 ~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~~~-----~~~ri~~~~gd~~~-----~~p--~~D~~~l~  146 (244)
T d1fp1d2          80 EGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAP-----PLSGIEHVGGDMFA-----SVP--QGDAMILK  146 (244)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCC-----CCTTEEEEECCTTT-----CCC--CEEEEEEE
T ss_pred             cCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecc-hhhhhccC-----CCCCeEEecCCccc-----ccc--cceEEEEe
Confidence            5568999999999999999999999999999998 55543322     23689999999864     233  3599988 


Q ss_pred             ------------------ccccccceeeecceEEecC-Ce--EE-----------------EeeCHHHHHHHHHhCCCcE
Q 009871          153 ------------------ERLTGKDQKISENFYVRGD-GT--RA-----------------FYFSNDFLTSLFKENGFDV  194 (523)
Q Consensus       153 ------------------~~~~~~~~~~~~~~~~~~~-g~--~~-----------------~~~~~~~l~~ll~~~Gf~~  194 (523)
                                        .+.+++++++.-...+.++ +.  ..                 ..+|.+++.++|+++||..
T Consensus       147 ~vLh~~~de~~~~iL~~~~~aL~pgg~llI~e~v~~~~~~~~~~~~~~~~~d~~m~~~~~g~ert~~e~~~ll~~AGF~~  226 (244)
T d1fp1d2         147 AVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEKLSKLSGFSK  226 (244)
T ss_dssp             SSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTTCSE
T ss_pred             hhhhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEEecCCCCCchHHHHHHHHHHHHHhhCCCcCCCHHHHHHHHHHcCCCc
Confidence                              1222444443222222211 00  00                 0137899999999999998


Q ss_pred             EEEE
Q 009871          195 EELG  198 (523)
Q Consensus       195 ~~~~  198 (523)
                      +++.
T Consensus       227 v~v~  230 (244)
T d1fp1d2         227 FQVA  230 (244)
T ss_dssp             EEEE
T ss_pred             eEEE
Confidence            8764

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.66  E-value=1.7e-07  Score=86.09  Aligned_cols=123  Identities=8%  Similarity=0.003  Sum_probs=90.7

Q ss_pred             CCCCCeEEEECCCccHHHHHHHhcCCC-EEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcC
Q 009871          333 IVAGKKVLELGCGCGGICSMVAAGSAD-LVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENN  411 (523)
Q Consensus       333 ~~~~~~VLElG~G~G~l~~~~a~~~~~-~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~  411 (523)
                      ....++|||||||+|.++..++++.+. +++..|+ |.+++.       ..   ...++.+...|..+.        .  
T Consensus        79 f~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~-------~~---~~~ri~~~~gd~~~~--------~--  137 (244)
T d1fp1d2          79 FEGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIEN-------AP---PLSGIEHVGGDMFAS--------V--  137 (244)
T ss_dssp             TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTT-------CC---CCTTEEEEECCTTTC--------C--
T ss_pred             ccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecc-hhhhhc-------cC---CCCCeEEecCCcccc--------c--
Confidence            345579999999999999888888654 8999999 665432       11   236788887776532        1  


Q ss_pred             CCccEEEEccccCCCC--ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecC--------------------------
Q 009871          412 EGFEVILGTDVSYIPE--AILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ--------------------------  463 (523)
Q Consensus       412 ~~fD~Ii~~d~~y~~~--~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~--------------------------  463 (523)
                      ...|+|+.+.++++..  ....+++.+.+.|         +|||.++++.....                          
T Consensus       138 p~~D~~~l~~vLh~~~de~~~~iL~~~~~aL---------~pgg~llI~e~v~~~~~~~~~~~~~~~~~d~~m~~~~~g~  208 (244)
T d1fp1d2         138 PQGDAMILKAVCHNWSDEKCIEFLSNCHKAL---------SPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGR  208 (244)
T ss_dssp             CCEEEEEEESSGGGSCHHHHHHHHHHHHHHE---------EEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHSCC
T ss_pred             ccceEEEEehhhhhCCHHHHHHHHHHHHHHc---------CCCcEEEEEEEEecCCCCCchHHHHHHHHHHHHHhhCCCc
Confidence            2569999999998864  4667899999999         67999988775321                          


Q ss_pred             -CChhHHHHHHHHcCCEEEEEcC
Q 009871          464 -VDEPSMLSAATQCGFRLVDKWP  485 (523)
Q Consensus       464 -~~~~~~~~~~~~~gf~~~~~~~  485 (523)
                       .+..++.+.++++||+..+++.
T Consensus       209 ert~~e~~~ll~~AGF~~v~v~~  231 (244)
T d1fp1d2         209 ERTEKQYEKLSKLSGFSKFQVAC  231 (244)
T ss_dssp             CEEHHHHHHHHHHTTCSEEEEEE
T ss_pred             CCCHHHHHHHHHHcCCCceEEEe
Confidence             0234567788999999988864

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.66  E-value=2.9e-08  Score=89.27  Aligned_cols=80  Identities=16%  Similarity=0.145  Sum_probs=66.4

Q ss_pred             hhhhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhcccc-CCCcEEEEEeeccCCccCCCCCCCc
Q 009871           68 GRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDF-TETRVSTFVCDLISDDLSRQISPSS  146 (523)
Q Consensus        68 ~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~-~~~~v~~~~~d~~~~~~~~~~~~~~  146 (523)
                      -+.+...++.+|||||||+|..+..|++.. +.+|+++|.++.+++.|+++... ...++.++++|....    ....+.
T Consensus        71 l~~L~l~~g~~VLeIGsGsGY~taila~l~-g~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g----~~~~~p  145 (215)
T d1jg1a_          71 LEIANLKPGMNILEVGTGSGWNAALISEIV-KTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKG----FPPKAP  145 (215)
T ss_dssp             HHHHTCCTTCCEEEECCTTSHHHHHHHHHH-CSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGC----CGGGCC
T ss_pred             HHhhccCccceEEEecCCCChhHHHHHHhh-CceeEEEeccHHHHHHHHHHHHHcCCceeEEEECccccC----CcccCc
Confidence            445666889999999999999998888764 35699999999999999998754 347899999999865    344678


Q ss_pred             eeEEEE
Q 009871          147 IDIVTM  152 (523)
Q Consensus       147 fD~V~~  152 (523)
                      ||+|++
T Consensus       146 fD~Iiv  151 (215)
T d1jg1a_         146 YDVIIV  151 (215)
T ss_dssp             EEEEEE
T ss_pred             ceeEEe
Confidence            999988

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=98.62  E-value=6.9e-09  Score=90.38  Aligned_cols=77  Identities=13%  Similarity=0.039  Sum_probs=55.4

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM  152 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~  152 (523)
                      ..+.+|||+|||+|.++..++.+  +++|+++|.|+.+++.++++.+..+...++...+.............+||+|++
T Consensus        40 ~~g~~vLDl~~G~G~~~i~a~~~--ga~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~If~  116 (171)
T d1ws6a1          40 PRRGRFLDPFAGSGAVGLEAASE--GWEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFM  116 (171)
T ss_dssp             TTCCEEEEETCSSCHHHHHHHHT--TCEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEE
T ss_pred             cCCCeEEEeccccchhhhhhhhc--cchhhhcccCHHHHhhhhHHHHhhccccceeeeehhcccccccccCCccceeEE
Confidence            46789999999999999988888  567999999999999999987644333344444432110000234568999987

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=98.59  E-value=5.8e-07  Score=87.74  Aligned_cols=146  Identities=15%  Similarity=0.107  Sum_probs=94.1

Q ss_pred             chhHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeee
Q 009871          317 WESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLE  396 (523)
Q Consensus       317 W~~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ld  396 (523)
                      -..+..|.+.+.+.....++.+||||-||+|.++..+|+. +++|+++|.++.+++.|++|+..|++.    ++.+...+
T Consensus       194 ~~~~e~l~~~v~~~~~~~~~~~vlDLycG~G~fsl~La~~-~~~V~gvE~~~~ai~~A~~na~~n~i~----n~~~~~~~  268 (358)
T d1uwva2         194 AGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQ-AASVVGVEGVPALVEKGQQNARLNGLQ----NVTFYHEN  268 (358)
T ss_dssp             HHHHHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHTTCC----SEEEEECC
T ss_pred             hhhhhHHHHHHHHhhccCCCceEEEecccccccchhcccc-ccEEEeccCcHHHHHHHHHhHHhcccc----cceeeecc
Confidence            3455666666665545557889999999999988888765 568999999999999999999999985    45555544


Q ss_pred             cCCCCcchhhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhHHHHHHHHc
Q 009871          397 WGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQC  476 (523)
Q Consensus       397 w~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~~~~~~~~  476 (523)
                      -.+.  +.. .......||+||....= .  .....+..+.++          +|.-.+|++-.+..  ...=+..+.+.
T Consensus       269 ~~~~--~~~-~~~~~~~~d~vilDPPR-~--G~~~~~~~l~~~----------~~~~ivYVSCnp~T--laRDl~~l~~~  330 (358)
T d1uwva2         269 LEED--VTK-QPWAKNGFDKVLLDPAR-A--GAAGVMQQIIKL----------EPIRIVYVSCNPAT--LARDSEALLKA  330 (358)
T ss_dssp             TTSC--CSS-SGGGTTCCSEEEECCCT-T--CCHHHHHHHHHH----------CCSEEEEEESCHHH--HHHHHHHHHHT
T ss_pred             hhhh--hhh-hhhhhccCceEEeCCCC-c--cHHHHHHHHHHc----------CCCEEEEEeCCHHH--HHHHHHHHHHC
Confidence            3332  111 11224579999875322 1  123455555443          34667777543211  11112344578


Q ss_pred             CCEEEEEcC
Q 009871          477 GFRLVDKWP  485 (523)
Q Consensus       477 gf~~~~~~~  485 (523)
                      ||++.++..
T Consensus       331 gy~l~~i~~  339 (358)
T d1uwva2         331 GYTIARLAM  339 (358)
T ss_dssp             TCEEEEEEE
T ss_pred             CCeEeEEEE
Confidence            999998854

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.58  E-value=4.6e-08  Score=90.09  Aligned_cols=66  Identities=21%  Similarity=0.387  Sum_probs=52.9

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM  152 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~  152 (523)
                      ....+|||||||+|..+..+++++|+.+++..|+ |..++.+..     ..+++++.+|+.+.     .+  .+|++++
T Consensus        79 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~~~~-----~~rv~~~~gD~f~~-----~p--~aD~~~l  144 (244)
T d1fp2a2          79 DGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSG-----SNNLTYVGGDMFTS-----IP--NADAVLL  144 (244)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC-----BTTEEEEECCTTTC-----CC--CCSEEEE
T ss_pred             cCceEEEEecCCccHHHHHHHHhCCCCeEEEecC-HHHHHhCcc-----cCceEEEecCcccC-----CC--CCcEEEE
Confidence            3557899999999999999999999999999998 555543322     36899999998742     22  4799998

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=7.2e-08  Score=87.03  Aligned_cols=110  Identities=15%  Similarity=0.084  Sum_probs=80.4

Q ss_pred             CCCeEEEECCCccHHHHHHHhcC--CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhh-hhhcC
Q 009871          335 AGKKVLELGCGCGGICSMVAAGS--ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAI-KEENN  411 (523)
Q Consensus       335 ~~~~VLElG~G~G~l~~~~a~~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~-~~~~~  411 (523)
                      +.++|||||||+|.-+..+|...  ..+|+.+|.+++..+.|++|+...+..   .++.+...+..+  .+..+ .....
T Consensus        59 ~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~---~~i~~~~Gda~e--~l~~~~~~~~~  133 (219)
T d2avda1          59 QAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAE---HKIDLRLKPALE--TLDELLAAGEA  133 (219)
T ss_dssp             TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCT---TTEEEEESCHHH--HHHHHHHTTCT
T ss_pred             CCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCcc---ceEEEEEeehhh--cchhhhhhccc
Confidence            56799999999995555555432  359999999999999999999998876   566665443221  11111 11235


Q ss_pred             CCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee
Q 009871          412 EGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIF  461 (523)
Q Consensus       412 ~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~  461 (523)
                      .+||+|+..   .+.+.....+..+.++|         +|||.+++-...
T Consensus       134 ~~fD~ifiD---~dk~~y~~~~~~~~~lL---------~~GGvii~Dn~l  171 (219)
T d2avda1         134 GTFDVAVVD---ADKENCSAYYERCLQLL---------RPGGILAVLRVL  171 (219)
T ss_dssp             TCEEEEEEC---SCSTTHHHHHHHHHHHE---------EEEEEEEEECCS
T ss_pred             CCccEEEEe---CCHHHHHHHHHHHHHHh---------cCCcEEEEeCCc
Confidence            689999995   56778889999999999         568888875554

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.58  E-value=6.6e-08  Score=87.59  Aligned_cols=77  Identities=10%  Similarity=0.068  Sum_probs=61.9

Q ss_pred             cCCCCCeEEEECCCccccHHHHHhhC------CCCEEEEEeCCHHHHHHHHhcccc------CCCcEEEEEeeccCCccC
Q 009871           72 SGAGRKDVLEVGCGAGNTIFPLIAAY------PDVFVYACDFSPRAVNLVMTHKDF------TETRVSTFVCDLISDDLS  139 (523)
Q Consensus        72 ~~~~~~~iLDiGcG~G~~~~~l~~~~------~~~~v~gvD~S~~~l~~a~~~~~~------~~~~v~~~~~d~~~~~~~  139 (523)
                      ...++.+|||||||+|..+..|++..      +..+|+++|+++++++.|+++...      ...++.+.++|....   
T Consensus        77 ~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d~~~~---  153 (223)
T d1r18a_          77 HLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKG---  153 (223)
T ss_dssp             TCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGC---
T ss_pred             ccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEecccccc---
Confidence            34678999999999999998887762      245899999999999999886421      235799999999865   


Q ss_pred             CCCCCCceeEEEE
Q 009871          140 RQISPSSIDIVTM  152 (523)
Q Consensus       140 ~~~~~~~fD~V~~  152 (523)
                       ..+.+.||+|++
T Consensus       154 -~~~~~~fD~Iiv  165 (223)
T d1r18a_         154 -YPPNAPYNAIHV  165 (223)
T ss_dssp             -CGGGCSEEEEEE
T ss_pred             -cccccceeeEEE
Confidence             345678999988

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=98.49  E-value=1.9e-07  Score=85.17  Aligned_cols=79  Identities=14%  Similarity=0.249  Sum_probs=62.1

Q ss_pred             cccchhhhHHHHhhhhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccC
Q 009871           56 FFKDRHYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLIS  135 (523)
Q Consensus        56 f~~~~~~l~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~  135 (523)
                      |..+...+ ..+-+.+...++.+|||||||+|.++..|++.  +.+|+|||+++.+++.++++.. ...+++++++|+.+
T Consensus         3 FL~d~~i~-~~iv~~~~~~~~d~VlEIGpG~G~LT~~Ll~~--~~~v~avE~D~~l~~~l~~~~~-~~~n~~i~~~D~l~   78 (235)
T d1qama_           3 FITSKHNI-DKIMTNIRLNEHDNIFEIGSGKGHFTLELVQR--CNFVTAIEIDHKLCKTTENKLV-DHDNFQVLNKDILQ   78 (235)
T ss_dssp             BCCCHHHH-HHHHTTCCCCTTCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHHHHHHHHTT-TCCSEEEECCCGGG
T ss_pred             CcCCHHHH-HHHHHhcCCCCCCeEEEECCCchHHHHHHHhC--cCceEEEeeccchHHHHHHHhh-cccchhhhhhhhhh
Confidence            44444433 34444555578999999999999999999998  4579999999999999998653 23689999999998


Q ss_pred             Ccc
Q 009871          136 DDL  138 (523)
Q Consensus       136 ~~~  138 (523)
                      .++
T Consensus        79 ~~~   81 (235)
T d1qama_          79 FKF   81 (235)
T ss_dssp             CCC
T ss_pred             ccc
Confidence            744

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=98.48  E-value=8.2e-08  Score=89.25  Aligned_cols=75  Identities=21%  Similarity=0.330  Sum_probs=60.4

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCC--CcEEEEEeeccCCccCCCCCCCceeEEE
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE--TRVSTFVCDLISDDLSRQISPSSIDIVT  151 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~V~  151 (523)
                      ....+|||+|||+|..+..+++ +|+++|+|+|+|+.+++.|++|++...  .++.+..+|+.+..   +...++||+|+
T Consensus       109 ~~~~~vld~g~GsG~i~~~la~-~~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~~---~~~~~~fDlIV  184 (271)
T d1nv8a_         109 YGIKTVADIGTGSGAIGVSVAK-FSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPF---KEKFASIEMIL  184 (271)
T ss_dssp             HTCCEEEEESCTTSHHHHHHHH-HSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGG---GGGTTTCCEEE
T ss_pred             ccccEEEEeeeeeehhhhhhhh-cccceeeechhhhhHHHHHHHHHHHcCCCceeEEeeccccccc---ccccCcccEEE
Confidence            4567899999999999988875 578999999999999999999986543  46778888886431   12246899999


Q ss_pred             E
Q 009871          152 M  152 (523)
Q Consensus       152 ~  152 (523)
                      |
T Consensus       185 s  185 (271)
T d1nv8a_         185 S  185 (271)
T ss_dssp             E
T ss_pred             E
Confidence            9

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.48  E-value=3.4e-08  Score=93.32  Aligned_cols=77  Identities=17%  Similarity=0.078  Sum_probs=60.7

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC---CCcEEEEEeeccCCccCCCCCCCceeEE
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT---ETRVSTFVCDLISDDLSRQISPSSIDIV  150 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~---~~~v~~~~~d~~~~~~~~~~~~~~fD~V  150 (523)
                      ..+.+|||++||+|.++..++..  +++|++||.|+.+++.|++|...+   ..+++|+++|+.+.--......++||+|
T Consensus       131 ~~~~rVLdlf~~tG~~sl~aa~~--GA~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~I  208 (309)
T d2igta1         131 DRPLKVLNLFGYTGVASLVAAAA--GAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDII  208 (309)
T ss_dssp             SSCCEEEEETCTTCHHHHHHHHT--TCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEE
T ss_pred             cCCCeEEEecCCCcHHHHHHHhC--CCeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCCCCEE
Confidence            56789999999999999998877  568999999999999999987533   3469999999864200001235689999


Q ss_pred             EE
Q 009871          151 TM  152 (523)
Q Consensus       151 ~~  152 (523)
                      ++
T Consensus       209 il  210 (309)
T d2igta1         209 LT  210 (309)
T ss_dssp             EE
T ss_pred             EE
Confidence            99

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.48  E-value=2.1e-07  Score=83.74  Aligned_cols=134  Identities=15%  Similarity=0.147  Sum_probs=85.4

Q ss_pred             HHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhc--CCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecC
Q 009871          321 HLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAG--SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWG  398 (523)
Q Consensus       321 ~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~--~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~  398 (523)
                      .+|...+...    +.++|||+|||+|.-+..+|..  ...+|+++|.++++++.++.|++..++.   .++++...+..
T Consensus        46 ~lL~~lv~~~----kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~---~~i~l~~Gd~~  118 (214)
T d2cl5a1          46 QIMDAVIREY----SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQ---DKVTILNGASQ  118 (214)
T ss_dssp             HHHHHHHHHH----CCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCG---GGEEEEESCHH
T ss_pred             HHHHHHHHhh----CCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCC---ccceeeecccc
Confidence            4455554432    4579999999999777777654  2469999999999999999999998875   56777655443


Q ss_pred             CCCcchhhh-hhcCCCccEEEEccccCCCCChHHH--HHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhHHHHHHHH
Q 009871          399 NRDHIEAIK-EENNEGFEVILGTDVSYIPEAILPL--FATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQ  475 (523)
Q Consensus       399 ~~~~~~~~~-~~~~~~fD~Ii~~d~~y~~~~~~~l--~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~~~~~~~  475 (523)
                      +.  +..+. .....+||+|+.-   .+.+.....  +....++|         +|||++++-... ....+.+.+..+.
T Consensus       119 e~--l~~l~~~~~~~~~D~ifiD---~~~~~~~~~~~l~~~~~lL---------kpGGvIv~Ddvl-~~g~~~~~~~vr~  183 (214)
T d2cl5a1         119 DL--IPQLKKKYDVDTLDMVFLD---HWKDRYLPDTLLLEKCGLL---------RKGTVLLADNVI-VPGTPDFLAYVRG  183 (214)
T ss_dssp             HH--GGGHHHHSCCCCEEEEEEC---SCGGGHHHHHHHHHHTTCE---------EEEEEEEESCCC-CCCCHHHHHHHHH
T ss_pred             cc--ccchhhcccccccceeeec---ccccccccHHHHHHHhCcc---------CCCcEEEEeCcC-CCCChHHHHHHhc
Confidence            21  22222 2234689999974   333433333  23333457         568865543333 3445567776665


Q ss_pred             c
Q 009871          476 C  476 (523)
Q Consensus       476 ~  476 (523)
                      .
T Consensus       184 ~  184 (214)
T d2cl5a1         184 S  184 (214)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.42  E-value=6.6e-08  Score=89.12  Aligned_cols=55  Identities=22%  Similarity=0.358  Sum_probs=45.0

Q ss_pred             CCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccC
Q 009871           75 GRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLIS  135 (523)
Q Consensus        75 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~  135 (523)
                      ...+|||||||+|..+..+++++|+.+++++|+.+. ++.++     ...++++..+|+.+
T Consensus        81 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v-i~~~~-----~~~r~~~~~~d~~~  135 (243)
T d1kyza2          81 GLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHV-IEDAP-----SYPGVEHVGGDMFV  135 (243)
T ss_dssp             SCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTT-TTTCC-----CCTTEEEEECCTTT
T ss_pred             CCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHh-hhhcc-----cCCceEEecccccc
Confidence            457899999999999999999999999999999653 33222     23679999999864

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.42  E-value=4.1e-07  Score=83.52  Aligned_cols=121  Identities=12%  Similarity=0.072  Sum_probs=88.3

Q ss_pred             CCeEEEECCCccHHHHHHHhcCC-CEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCc
Q 009871          336 GKKVLELGCGCGGICSMVAAGSA-DLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGF  414 (523)
Q Consensus       336 ~~~VLElG~G~G~l~~~~a~~~~-~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~f  414 (523)
                      .++|||+|||+|.++..++++.+ .++++.|. |.+++.+       .   ...++++...|..+.          ...+
T Consensus        81 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~~-------~---~~~rv~~~~gD~f~~----------~p~a  139 (244)
T d1fp2a2          81 LESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENL-------S---GSNNLTYVGGDMFTS----------IPNA  139 (244)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTC-------C---CBTTEEEEECCTTTC----------CCCC
T ss_pred             ceEEEEecCCccHHHHHHHHhCCCCeEEEecC-HHHHHhC-------c---ccCceEEEecCcccC----------CCCC
Confidence            46899999999988888888864 49999999 6665432       1   236788887776542          1368


Q ss_pred             cEEEEccccCCCC--ChHHHHHHHHHHhhccCCCCCCCCC---cEEEEEEeec--------------------------C
Q 009871          415 EVILGTDVSYIPE--AILPLFATAKELTASSNKSLREDQQ---PAFILCHIFR--------------------------Q  463 (523)
Q Consensus       415 D~Ii~~d~~y~~~--~~~~l~~~l~~ll~~~~~~~~~~~~---g~~~l~~~~r--------------------------~  463 (523)
                      |+++...++++..  .-..+++.+.+.|         +|+   |+++++...-                          .
T Consensus       140 D~~~l~~vLHdw~d~~~~~iL~~~~~al---------~pgg~~~~lli~e~~~~~~~~~~~~~~~~~~~dl~m~~~~G~e  210 (244)
T d1fp2a2         140 DAVLLKYILHNWTDKDCLRILKKCKEAV---------TNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMACLNGKE  210 (244)
T ss_dssp             SEEEEESCGGGSCHHHHHHHHHHHHHHH---------SGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGGGTCCC
T ss_pred             cEEEEEeecccCChHHHHHHHHHHHHHc---------CcccCCcEEEEEEeecCCCCCCchHHHHHHHHHHHHHhCCCcC
Confidence            9999999998855  3457889999999         344   6777665421                          1


Q ss_pred             CChhHHHHHHHHcCCEEEEEcCC
Q 009871          464 VDEPSMLSAATQCGFRLVDKWPS  486 (523)
Q Consensus       464 ~~~~~~~~~~~~~gf~~~~~~~~  486 (523)
                      .+..++.+.++++||+..++++.
T Consensus       211 rt~~e~~~ll~~AGf~~~~i~~~  233 (244)
T d1fp2a2         211 RNEEEWKKLFIEAGFQHYKISPL  233 (244)
T ss_dssp             EEHHHHHHHHHHTTCCEEEEEEE
T ss_pred             CCHHHHHHHHHHcCCceEEEEEC
Confidence            12356778889999999998764

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.40  E-value=6.9e-07  Score=80.77  Aligned_cols=109  Identities=12%  Similarity=0.044  Sum_probs=80.5

Q ss_pred             CCCeEEEECCCccHHHHHHHhc-C-CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhh--hc
Q 009871          335 AGKKVLELGCGCGGICSMVAAG-S-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKE--EN  410 (523)
Q Consensus       335 ~~~~VLElG~G~G~l~~~~a~~-~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~--~~  410 (523)
                      +.++|||||+++|.-+..+|.. . ..+|+.+|.+++..+.|++|+...+..   .++.+...+..+  .+..+..  ..
T Consensus        59 ~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~---~~i~~~~g~a~~--~L~~l~~~~~~  133 (227)
T d1susa1          59 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVD---HKIDFREGPALP--VLDEMIKDEKN  133 (227)
T ss_dssp             TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCG---GGEEEEESCHHH--HHHHHHHCGGG
T ss_pred             CCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccc---cceeeeehHHHH--HHHHHHhcccc
Confidence            5579999999999666666543 2 359999999999999999999998875   567776544322  1222111  12


Q ss_pred             CCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEe
Q 009871          411 NEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHI  460 (523)
Q Consensus       411 ~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~  460 (523)
                      .++||+|+.-   -+.......++.+..+|         +|||.+++-..
T Consensus       134 ~~~fD~iFiD---a~k~~y~~~~e~~~~ll---------~~gGiii~DNv  171 (227)
T d1susa1         134 HGSYDFIFVD---ADKDNYLNYHKRLIDLV---------KVGGVIGYDNT  171 (227)
T ss_dssp             TTCBSEEEEC---SCSTTHHHHHHHHHHHB---------CTTCCEEEETT
T ss_pred             CCceeEEEec---cchhhhHHHHHHHHhhc---------CCCcEEEEccC
Confidence            4689999984   56678899999999999         67888887544

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=98.40  E-value=5.1e-08  Score=89.51  Aligned_cols=90  Identities=17%  Similarity=0.200  Sum_probs=67.7

Q ss_pred             ccccchhhhHHHHhhhhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeecc
Q 009871           55 RFFKDRHYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLI  134 (523)
Q Consensus        55 ~f~~~~~~l~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~  134 (523)
                      +|..+...+ ..+-+.+...++.+|||||||+|.++..|++.  +.+|+|||+++.+++.++++... ..+++++++|+.
T Consensus        10 nFL~d~~ii-~kIv~~~~~~~~d~VLEIGpG~G~LT~~L~~~--~~~v~aIE~D~~l~~~l~~~~~~-~~n~~ii~~D~l   85 (245)
T d1yuba_          10 NFLTSEKVL-NQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI--SKQVTSIELDSHLFNLSSEKLKL-NTRVTLIHQDIL   85 (245)
T ss_dssp             CBCCCTTTH-HHHHHHCCCCSSEEEEECSCCCSSCSHHHHHH--SSEEEESSSSCSSSSSSSCTTTT-CSEEEECCSCCT
T ss_pred             cccCCHHHH-HHHHHhcCCCCCCeEEEECCCccHHHHHHHhh--cCceeEeeecccchhhhhhhhhh-ccchhhhhhhhh
Confidence            455554444 34445555567889999999999999999998  45799999999999888776532 368999999999


Q ss_pred             CCccCCCCCCCceeEEEE
Q 009871          135 SDDLSRQISPSSIDIVTM  152 (523)
Q Consensus       135 ~~~~~~~~~~~~fD~V~~  152 (523)
                      +.+    ++...++.|++
T Consensus        86 ~~~----~~~~~~~~vv~   99 (245)
T d1yuba_          86 QFQ----FPNKQRYKIVG   99 (245)
T ss_dssp             TTT----CCCSSEEEEEE
T ss_pred             ccc----cccceeeeEee
Confidence            874    44556666655

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=98.37  E-value=1.7e-07  Score=89.44  Aligned_cols=114  Identities=11%  Similarity=0.095  Sum_probs=75.8

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC---CCcEEEEEeeccCCccCC-CCCCCceeE
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT---ETRVSTFVCDLISDDLSR-QISPSSIDI  149 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~---~~~v~~~~~d~~~~~~~~-~~~~~~fD~  149 (523)
                      .++.+|||++||+|.++..++..+ ...|++||+|+.+++.|+++...+   ..+++++++|+.+. +.. ....++||+
T Consensus       143 ~~g~~VLdlf~~~G~~sl~aa~~g-a~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~-l~~~~~~~~~fD~  220 (317)
T d2b78a2         143 AAGKTVLNLFSYTAAFSVAAAMGG-AMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDY-FKYARRHHLTYDI  220 (317)
T ss_dssp             TBTCEEEEETCTTTHHHHHHHHTT-BSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHH-HHHHHHTTCCEEE
T ss_pred             hCCCceeecCCCCcHHHHHHHhCC-CceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHH-HHHHHhhcCCCCE
Confidence            468899999999999998877663 347999999999999999987533   35799999998632 000 113468999


Q ss_pred             EEE--ccccccceeeec------------ceEEecCCeEEEe-----eCHHHHHHHHHh
Q 009871          150 VTM--ERLTGKDQKISE------------NFYVRGDGTRAFY-----FSNDFLTSLFKE  189 (523)
Q Consensus       150 V~~--~~~~~~~~~~~~------------~~~~~~~g~~~~~-----~~~~~l~~ll~~  189 (523)
                      |++  ..|.+....+..            .-.++++|.+++.     ++.+++..++.+
T Consensus       221 Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs~~~~~~~f~~~v~~  279 (317)
T d2b78a2         221 IIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAANMTVSQFKKQIEK  279 (317)
T ss_dssp             EEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCCHHHHHHHHHH
Confidence            999  222111110000            0146778877663     366666665544

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.36  E-value=2.1e-07  Score=91.33  Aligned_cols=52  Identities=13%  Similarity=0.310  Sum_probs=45.4

Q ss_pred             hhhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccc
Q 009871           69 RYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKD  120 (523)
Q Consensus        69 ~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~  120 (523)
                      +.+...++.+|||||||+|..+..+++.++..+|+|||+|+.|++.|+++..
T Consensus       210 ~~l~Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~  261 (406)
T d1u2za_         210 QQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYE  261 (406)
T ss_dssp             HHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHH
T ss_pred             HHhCCCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHH
Confidence            3445578899999999999999999999766689999999999999998653

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.35  E-value=1.3e-07  Score=83.40  Aligned_cols=113  Identities=16%  Similarity=0.200  Sum_probs=76.2

Q ss_pred             CCCCCCeEEEECCCccHHHHHHHhcC-CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhc
Q 009871          332 TIVAGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEEN  410 (523)
Q Consensus       332 ~~~~~~~VLElG~G~G~l~~~~a~~~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~  410 (523)
                      ...++..+||++||+|+.+..++... ..+|+++|.+++|++.+++++...+     .++.+...+..+...  .+..+.
T Consensus        20 ~~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~-----~r~~~~~~~f~~~~~--~~~~~~   92 (192)
T d1m6ya2          20 KPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS-----DRVSLFKVSYREADF--LLKTLG   92 (192)
T ss_dssp             CCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT-----TTEEEEECCGGGHHH--HHHHTT
T ss_pred             CCCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhcccc-----ccccchhHHHhhHHH--HHHHcC
Confidence            34578899999999999998888863 4589999999999999999886642     356665554433211  122344


Q ss_pred             CCCccEEEEccccCC----------CCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee
Q 009871          411 NEGFEVILGTDVSYI----------PEAILPLFATAKELTASSNKSLREDQQPAFILCHIF  461 (523)
Q Consensus       411 ~~~fD~Ii~~d~~y~----------~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~  461 (523)
                      ..+||.|+. |+-+.          .......+....++|         +++|.+.+...+
T Consensus        93 ~~~vdgIl~-DlGvSs~Qld~~~r~~~~~~~~L~~a~~~L---------k~gG~l~ii~f~  143 (192)
T d1m6ya2          93 IEKVDGILM-DLGVSTYQLKGENRELENLKEFLKKAEDLL---------NPGGRIVVISFH  143 (192)
T ss_dssp             CSCEEEEEE-ECSCCHHHHHTSHTHHHHHHHHHHHGGGGE---------EEEEEEEEEESS
T ss_pred             CCCcceeee-ccchhHhhhhhhhccchhHHHHHHHHHHhc---------CCCCeeeeeccc
Confidence            578999986 33321          123445555566666         568888765533

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=98.30  E-value=3.6e-07  Score=80.16  Aligned_cols=74  Identities=11%  Similarity=0.091  Sum_probs=59.8

Q ss_pred             CCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhcccc-CCCcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871           75 GRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDF-TETRVSTFVCDLISDDLSRQISPSSIDIVTM  152 (523)
Q Consensus        75 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~-~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~  152 (523)
                      .+.+|||++||+|.++...+.++. .+|++||.++.+++.++++... ...+..++++|+.+. +  ......||+|++
T Consensus        43 ~~~~vLDlfaGsG~~giealsrGa-~~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~~~-l--~~~~~~fDlIf~  117 (183)
T d2fpoa1          43 VDAQCLDCFAGSGALGLEALSRYA-AGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSF-L--AQKGTPHNIVFV  117 (183)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHH-H--SSCCCCEEEEEE
T ss_pred             chhhhhhhhccccceeeeEEecCc-ceeEEEEEeechhhHHHHHHhhccccceeeeeeccccc-c--cccccccCEEEE
Confidence            568999999999999999888863 3799999999999999998653 346788899998643 1  124578999987

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.28  E-value=6.8e-07  Score=82.14  Aligned_cols=121  Identities=10%  Similarity=0.021  Sum_probs=84.9

Q ss_pred             CCCeEEEECCCccHHHHHHHhcCCC-EEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCC
Q 009871          335 AGKKVLELGCGCGGICSMVAAGSAD-LVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG  413 (523)
Q Consensus       335 ~~~~VLElG~G~G~l~~~~a~~~~~-~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~  413 (523)
                      ..++|||||||+|.++..+++..+. ++++.|+ |.+++.+       .   ...++.+...|+.+.        ++  .
T Consensus        81 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~~-------~---~~~r~~~~~~d~~~~--------~P--~  139 (243)
T d1kyza2          81 GLKSLVDVGGGTGAVINTIVSKYPTIKGINFDL-PHVIEDA-------P---SYPGVEHVGGDMFVS--------IP--K  139 (243)
T ss_dssp             SCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-TTTTTTC-------C---CCTTEEEEECCTTTC--------CC--C
T ss_pred             CCcEEEEecCCCcHHHHHHHHHCCCCeEEEccc-HHhhhhc-------c---cCCceEEeccccccc--------CC--C
Confidence            4578999999999999998888654 9999999 4443221       1   225778877776543        12  3


Q ss_pred             ccEEEEccccCCC--CChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec----------------------------C
Q 009871          414 FEVILGTDVSYIP--EAILPLFATAKELTASSNKSLREDQQPAFILCHIFR----------------------------Q  463 (523)
Q Consensus       414 fD~Ii~~d~~y~~--~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r----------------------------~  463 (523)
                      .|+++...++++.  +....+++.+.+.|         +|+|.++++....                            .
T Consensus       140 ad~~~l~~vlh~~~d~~~~~iL~~~~~al---------~pgg~~li~d~~~~~~~~~~~~~~~~~~~d~~ml~~~~~g~e  210 (243)
T d1kyza2         140 ADAVFMKWICHDWSDEHCLKFLKNCYEAL---------PDNGKVIVAECILPVAPDSSLATKGVVHIDVIMLAHNPGGKE  210 (243)
T ss_dssp             CSCEECSSSSTTSCHHHHHHHHHHHHHHC---------CSSSCEEEEECEECSSCCCCHHHHHHHHHHHHHHHHCSSCCC
T ss_pred             cceEEEEEEeecCCHHHHHHHHHHHHHhc---------CCCceEEEEEEEecCCCCCchhhHHHHHHHHHHHhhCCCCCc
Confidence            5667777777764  35777889999999         6788888765431                            0


Q ss_pred             CChhHHHHHHHHcCCEEEEEcC
Q 009871          464 VDEPSMLSAATQCGFRLVDKWP  485 (523)
Q Consensus       464 ~~~~~~~~~~~~~gf~~~~~~~  485 (523)
                      .+..++.+.++++||+..++..
T Consensus       211 rt~~e~~~ll~~AGf~~vkv~~  232 (243)
T d1kyza2         211 RTQKEFEDLAKGAGFQGFKVHC  232 (243)
T ss_dssp             EEHHHHHHHHHHHCCSCEEEEE
T ss_pred             CCHHHHHHHHHHcCCCcEEEEE
Confidence            1134567788899999888865

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=98.27  E-value=1.4e-06  Score=85.01  Aligned_cols=85  Identities=19%  Similarity=0.219  Sum_probs=66.9

Q ss_pred             HHhhhhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC-CCcEEEEEeeccCCccCCCCCC
Q 009871           66 EWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT-ETRVSTFVCDLISDDLSRQISP  144 (523)
Q Consensus        66 ~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~-~~~v~~~~~d~~~~~~~~~~~~  144 (523)
                      ...+++...++.+|||+-||+|.++..|++.+  .+|+|+|.++.+++.|++++..+ ..++.|+.+|+.+.-.......
T Consensus       203 ~v~~~~~~~~~~~vlDLycG~G~fsl~La~~~--~~V~gvE~~~~ai~~A~~na~~n~i~n~~~~~~~~~~~~~~~~~~~  280 (358)
T d1uwva2         203 RALEWLDVQPEDRVLDLFCGMGNFTLPLATQA--ASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAK  280 (358)
T ss_dssp             HHHHHHTCCTTCEEEEESCTTTTTHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGT
T ss_pred             HHHHhhccCCCceEEEecccccccchhccccc--cEEEeccCcHHHHHHHHHhHHhcccccceeeecchhhhhhhhhhhh
Confidence            33455666678899999999999999999884  56999999999999999987544 4789999999875311112335


Q ss_pred             CceeEEEE
Q 009871          145 SSIDIVTM  152 (523)
Q Consensus       145 ~~fD~V~~  152 (523)
                      ..+|+|+.
T Consensus       281 ~~~d~vil  288 (358)
T d1uwva2         281 NGFDKVLL  288 (358)
T ss_dssp             TCCSEEEE
T ss_pred             ccCceEEe
Confidence            67999998

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.20  E-value=5e-07  Score=81.18  Aligned_cols=79  Identities=15%  Similarity=0.261  Sum_probs=62.9

Q ss_pred             CCCCeEEEECCCccccHHHHHhhC-CCCEEEEEeCCHHHHHHHHhccccC--CCcEEEEEeeccCC--ccCCCCCCCcee
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAY-PDVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISD--DLSRQISPSSID  148 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~-~~~~v~gvD~S~~~l~~a~~~~~~~--~~~v~~~~~d~~~~--~~~~~~~~~~fD  148 (523)
                      .++++|||||||+|..+..|++.. ++.+|+++|+++.+++.|+++....  ..+++++.+|..+.  .+...+..++||
T Consensus        55 ~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~~~D  134 (214)
T d2cl5a1          55 YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLD  134 (214)
T ss_dssp             HCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHHSCCCCEE
T ss_pred             hCCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccchhhcccccccc
Confidence            456899999999999999999875 4689999999999999999876432  35799999998752  111123457899


Q ss_pred             EEEE
Q 009871          149 IVTM  152 (523)
Q Consensus       149 ~V~~  152 (523)
                      +|+.
T Consensus       135 ~ifi  138 (214)
T d2cl5a1         135 MVFL  138 (214)
T ss_dssp             EEEE
T ss_pred             eeee
Confidence            9998

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=98.11  E-value=4.5e-06  Score=79.09  Aligned_cols=135  Identities=14%  Similarity=0.128  Sum_probs=84.3

Q ss_pred             CCCeEEEECCCccHHHHHHHhcC-CCEEEEEcCChHHHHHHHHHHHh-cCCCCCCCceEEEeeecCCCCcchhhhhhcCC
Q 009871          335 AGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTA-NLKPPFLAKLITKRLEWGNRDHIEAIKEENNE  412 (523)
Q Consensus       335 ~~~~VLElG~G~G~l~~~~a~~~-~~~V~~~D~~~~~l~~~~~n~~~-n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~  412 (523)
                      ..++||.||.|.|+++..+++.. ..+|+++|+++++++.+++.+.. |.......++++...|+.+.     + ...+.
T Consensus        77 ~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~-----l-~~~~~  150 (312)
T d1uira_          77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAY-----L-ERTEE  150 (312)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHH-----H-HHCCC
T ss_pred             CcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHH-----h-hhcCC
Confidence            45799999999998887777764 56999999999999999987643 22222335677765554321     1 12356


Q ss_pred             CccEEEE--ccccCCCC-----ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhH----HHHHHHHcCCEEE
Q 009871          413 GFEVILG--TDVSYIPE-----AILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPS----MLSAATQCGFRLV  481 (523)
Q Consensus       413 ~fD~Ii~--~d~~y~~~-----~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~----~~~~~~~~gf~~~  481 (523)
                      +||+|+.  .|......     .-..+++.+++.|         +|+|++++-...-......    +.+.+++. |...
T Consensus       151 ~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L---------~p~Gvlv~~~~s~~~~~~~~~~~i~~tl~~~-F~~V  220 (312)
T d1uira_         151 RYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHL---------NPGGVMGMQTGMILLTHHRVHPVVHRTVREA-FRYV  220 (312)
T ss_dssp             CEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTE---------EEEEEEEEEEEEECC---CHHHHHHHHHHTT-CSEE
T ss_pred             cccEEEEeCCCcccccchhhhhhhHHHHHHHHHhc---------CCCceEEEecCCcccchHHHHHHHHHHHHHh-CceE
Confidence            8999995  23222211     1256889999999         6699887643222222222    33444444 6555


Q ss_pred             EEcC
Q 009871          482 DKWP  485 (523)
Q Consensus       482 ~~~~  485 (523)
                      ..+.
T Consensus       221 ~~y~  224 (312)
T d1uira_         221 RSYK  224 (312)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            5544

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.11  E-value=8.1e-07  Score=77.65  Aligned_cols=77  Identities=12%  Similarity=0.062  Sum_probs=60.1

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC--CCcEEEEEeeccCCccCC-CCCCCceeEE
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISDDLSR-QISPSSIDIV  150 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~~~~-~~~~~~fD~V  150 (523)
                      .++.+|||++||+|.++...+.++. .+|++||.++.+++.++++....  ..+++++++|+.+. +.. .-...+||+|
T Consensus        40 ~~~~~vLDlfaGsG~~g~ea~srGa-~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~-l~~~~~~~~~fDlI  117 (182)
T d2fhpa1          40 FDGGMALDLYSGSGGLAIEAVSRGM-DKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRA-LEQFYEEKLQFDLV  117 (182)
T ss_dssp             CSSCEEEETTCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHH-HHHHHHTTCCEEEE
T ss_pred             cCCCEEEEcccccccccceeeecch-hHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhh-hhhhcccCCCcceE
Confidence            4689999999999999999998853 47999999999999999986432  35799999998642 000 1134579999


Q ss_pred             EE
Q 009871          151 TM  152 (523)
Q Consensus       151 ~~  152 (523)
                      ++
T Consensus       118 fl  119 (182)
T d2fhpa1         118 LL  119 (182)
T ss_dssp             EE
T ss_pred             Ee
Confidence            77

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.08  E-value=1.3e-06  Score=77.17  Aligned_cols=112  Identities=12%  Similarity=0.012  Sum_probs=68.2

Q ss_pred             CCCeEEEECCCccHH----HHHHHhc----C-CCEEEEEcCChHHHHHHHHHHHhcCCCC---------------CC---
Q 009871          335 AGKKVLELGCGCGGI----CSMVAAG----S-ADLVVATDGDSIALDLLAQNVTANLKPP---------------FL---  387 (523)
Q Consensus       335 ~~~~VLElG~G~G~l----~~~~a~~----~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~---------------~~---  387 (523)
                      +..+|+++|||||--    +.++...    + .-+|++||+|+.+++.|+..+.......               ..   
T Consensus        24 ~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~~  103 (193)
T d1af7a2          24 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG  103 (193)
T ss_dssp             SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred             CCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCccc
Confidence            345999999999953    3333322    1 1279999999999999985432111000               00   


Q ss_pred             ---------CceEEEeeecCCCCcchhhhhhcCCCccEEEEccccCC--CCChHHHHHHHHHHhhccCCCCCCCCCcEEE
Q 009871          388 ---------AKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYI--PEAILPLFATAKELTASSNKSLREDQQPAFI  456 (523)
Q Consensus       388 ---------~~v~~~~ldw~~~~~~~~~~~~~~~~fD~Ii~~d~~y~--~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~  456 (523)
                               ..+.+...+....      .....++||+|+|..|+.+  .+....+++.+.+.|         +|||.++
T Consensus       104 ~~~~~~~~~~~v~~~~~~~~~~------~~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L---------~pGG~L~  168 (193)
T d1af7a2         104 LVRVRQELANYVEFSSVNLLEK------QYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLL---------KPDGLLF  168 (193)
T ss_dssp             EEEECHHHHTTEEEEECCTTCS------SCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGE---------EEEEEEE
T ss_pred             eeehHHHHHHHHHHhhhhcccc------ccCCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHh---------CCCcEEE
Confidence                     0011111111110      0112468999999998754  345678999999999         6799988


Q ss_pred             EEEee
Q 009871          457 LCHIF  461 (523)
Q Consensus       457 l~~~~  461 (523)
                      +.+..
T Consensus       169 lG~sE  173 (193)
T d1af7a2         169 AGHSE  173 (193)
T ss_dssp             ECTTC
T ss_pred             EecCc
Confidence            86543

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.07  E-value=9.7e-06  Score=78.60  Aligned_cols=108  Identities=18%  Similarity=0.109  Sum_probs=76.6

Q ss_pred             CCCeEEEECCCccHHHHHHHh-cCCCEEEEEcCChHHHHHHHHHHHhcCCCCC-----------CCceEEEeeecCCCCc
Q 009871          335 AGKKVLELGCGCGGICSMVAA-GSADLVVATDGDSIALDLLAQNVTANLKPPF-----------LAKLITKRLEWGNRDH  402 (523)
Q Consensus       335 ~~~~VLElG~G~G~l~~~~a~-~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~-----------~~~v~~~~ldw~~~~~  402 (523)
                      ++.+|||..||||+.++..|. .++.+|++.|+|+.+++.+++|++.|+....           ...+.+...|+.    
T Consensus        45 ~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~----  120 (375)
T d2dula1          45 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDAN----  120 (375)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHH----
T ss_pred             CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhh----
Confidence            678999999999988886665 4677999999999999999999999987531           112333322221    


Q ss_pred             chhhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee
Q 009871          403 IEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIF  461 (523)
Q Consensus       403 ~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~  461 (523)
                        .+.......||+|.. |. |  ....++++..-+.+         +.+|.+.++..-
T Consensus       121 --~~~~~~~~~fDvIDi-DP-f--Gs~~pfldsAi~a~---------~~~Gll~vTaTD  164 (375)
T d2dula1         121 --RLMAERHRYFHFIDL-DP-F--GSPMEFLDTALRSA---------KRRGILGVTATD  164 (375)
T ss_dssp             --HHHHHSTTCEEEEEE-CC-S--SCCHHHHHHHHHHE---------EEEEEEEEEECC
T ss_pred             --hhhHhhcCcCCcccC-CC-C--CCcHHHHHHHHHHh---------ccCCEEEEEecC
Confidence              111223468999887 44 3  34577888888888         447888776543

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.06  E-value=2.8e-06  Score=74.96  Aligned_cols=47  Identities=17%  Similarity=0.196  Sum_probs=35.2

Q ss_pred             hcCCCCCeEEEECCCccccHHH----HHhh----CCCCEEEEEeCCHHHHHHHHh
Q 009871           71 FSGAGRKDVLEVGCGAGNTIFP----LIAA----YPDVFVYACDFSPRAVNLVMT  117 (523)
Q Consensus        71 ~~~~~~~~iLDiGcG~G~~~~~----l~~~----~~~~~v~gvD~S~~~l~~a~~  117 (523)
                      ++.....+|+++|||+|.-+..    +.+.    ....+|+|+|+|+.+++.|++
T Consensus        20 ~~~~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~   74 (193)
T d1af7a2          20 RRRHGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARS   74 (193)
T ss_dssp             HHSCSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHH
T ss_pred             hccCCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhc
Confidence            3445667999999999985433    3332    124689999999999999985

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=98.03  E-value=7.6e-06  Score=74.19  Aligned_cols=89  Identities=12%  Similarity=0.137  Sum_probs=61.2

Q ss_pred             HHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcc
Q 009871          324 AAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHI  403 (523)
Q Consensus       324 a~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~  403 (523)
                      ++.+.+.....++.+|||+|||+|.++..++..+ .+|+++|+|+.+++.++++...+      .++.+...|.-+.   
T Consensus        10 ~~~iv~~~~~~~~d~VlEIGpG~G~LT~~Ll~~~-~~v~avE~D~~l~~~l~~~~~~~------~n~~i~~~D~l~~---   79 (235)
T d1qama_          10 IDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRC-NFVTAIEIDHKLCKTTENKLVDH------DNFQVLNKDILQF---   79 (235)
T ss_dssp             HHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEECSCHHHHHHHHHHTTTC------CSEEEECCCGGGC---
T ss_pred             HHHHHHhcCCCCCCeEEEECCCchHHHHHHHhCc-CceEEEeeccchHHHHHHHhhcc------cchhhhhhhhhhc---
Confidence            4556666666789999999999999999999874 68999999999999998765431      3555554433322   


Q ss_pred             hhhhhhcCCCccEEEEccccCCCC
Q 009871          404 EAIKEENNEGFEVILGTDVSYIPE  427 (523)
Q Consensus       404 ~~~~~~~~~~fD~Ii~~d~~y~~~  427 (523)
                          +++......|++ .+.|+..
T Consensus        80 ----~~~~~~~~~vv~-NLPYnIs   98 (235)
T d1qama_          80 ----KFPKNQSYKIFG-NIPYNIS   98 (235)
T ss_dssp             ----CCCSSCCCEEEE-ECCGGGH
T ss_pred             ----cccccccceeee-eehhhhh
Confidence                122223344555 5667643

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.02  E-value=1.2e-05  Score=74.73  Aligned_cols=132  Identities=19%  Similarity=0.133  Sum_probs=83.8

Q ss_pred             CCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCC------CCCCCceEEEeeecCCCCcchhhhh
Q 009871          335 AGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLK------PPFLAKLITKRLEWGNRDHIEAIKE  408 (523)
Q Consensus       335 ~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~------~~~~~~v~~~~ldw~~~~~~~~~~~  408 (523)
                      +.++||-||+|.|+.+..+++....+|+++|+++.+++.+++-...+..      .....++++...|..     .-++ 
T Consensus        72 ~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~-----~~l~-  145 (276)
T d1mjfa_          72 KPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGF-----EFIK-  145 (276)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHH-----HHHH-
T ss_pred             CCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHH-----HHHh-
Confidence            4579999999999888777777667999999999999999875433221      012356666543321     1111 


Q ss_pred             hcCCCccEEEEccccCCCCC-----hHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChh---HHHHHHHHcCCEE
Q 009871          409 ENNEGFEVILGTDVSYIPEA-----ILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEP---SMLSAATQCGFRL  480 (523)
Q Consensus       409 ~~~~~fD~Ii~~d~~y~~~~-----~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~---~~~~~~~~~gf~~  480 (523)
                       ..++||+|+. |+......     -..+++.+++.|         +|+|++++-...-.....   .+...+++. |..
T Consensus       146 -~~~~yDvIi~-D~~~~~~~~~~L~t~eF~~~~~~~L---------~~~Gv~v~q~~s~~~~~~~~~~~~~tl~~~-F~~  213 (276)
T d1mjfa_         146 -NNRGFDVIIA-DSTDPVGPAKVLFSEEFYRYVYDAL---------NNPGIYVTQAGSVYLFTDELISAYKEMKKV-FDR  213 (276)
T ss_dssp             -HCCCEEEEEE-ECCCCC-----TTSHHHHHHHHHHE---------EEEEEEEEEEEETTTSHHHHHHHHHHHHHH-CSE
T ss_pred             -ccCCCCEEEE-eCCCCCCCcccccCHHHHHhhHhhc---------CCCceEEEecCCcchhHHHHHHHHHHHHhh-CCe
Confidence             2468999996 44332211     257899999999         669988764433233333   344555565 444


Q ss_pred             EEEc
Q 009871          481 VDKW  484 (523)
Q Consensus       481 ~~~~  484 (523)
                      ...+
T Consensus       214 v~~y  217 (276)
T d1mjfa_         214 VYYY  217 (276)
T ss_dssp             EEEE
T ss_pred             eEEE
Confidence            4443

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.02  E-value=6.7e-06  Score=78.92  Aligned_cols=140  Identities=9%  Similarity=0.007  Sum_probs=86.5

Q ss_pred             HHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhc----C--CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEee
Q 009871          322 LMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAG----S--ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRL  395 (523)
Q Consensus       322 ~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~----~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l  395 (523)
                      +|+..+.......++.+|||.|||+|++...+...    .  ...++|+|+++.++..|+.|+..++..     ......
T Consensus       104 ~m~~l~~~~~~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~-----~~~~~~  178 (328)
T d2f8la1         104 IVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQK-----MTLLHQ  178 (328)
T ss_dssp             HHHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCC-----CEEEES
T ss_pred             HHHHHHHHHhCCCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhh-----hhhhcc
Confidence            45555443222335679999999999887666532    1  237999999999999999999887653     223332


Q ss_pred             ecCCCCcchhhhhhcCCCccEEEEccccCCCC------------------ChHHHHHHHHHHhhccCCCCCCCCCcEEEE
Q 009871          396 EWGNRDHIEAIKEENNEGFEVILGTDVSYIPE------------------AILPLFATAKELTASSNKSLREDQQPAFIL  457 (523)
Q Consensus       396 dw~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~------------------~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l  457 (523)
                      ++-..        ....+||+|+++...-...                  ....++..+.++|         +++|.+.+
T Consensus       179 d~~~~--------~~~~~fD~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~L---------k~~G~~~~  241 (328)
T d2f8la1         179 DGLAN--------LLVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYT---------KPGGYLFF  241 (328)
T ss_dssp             CTTSC--------CCCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTE---------EEEEEEEE
T ss_pred             ccccc--------cccccccccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhc---------CCCCceEE
Confidence            32211        2346899999987642111                  1233677777888         56887766


Q ss_pred             EEeec---CCChhHHHHHHHHcCCEEEEEc
Q 009871          458 CHIFR---QVDEPSMLSAATQCGFRLVDKW  484 (523)
Q Consensus       458 ~~~~r---~~~~~~~~~~~~~~gf~~~~~~  484 (523)
                      ..+..   ......+.+.+.+. +.+..+.
T Consensus       242 I~p~~~l~~~~~~~lR~~L~~~-~~i~~ii  270 (328)
T d2f8la1         242 LVPDAMFGTSDFAKVDKFIKKN-GHIEGII  270 (328)
T ss_dssp             EEEGGGGGSTTHHHHHHHHHHH-EEEEEEE
T ss_pred             EecCccccCchhHHHHHHHHhC-CcEEEEE
Confidence            55543   22334566655555 3554443

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=98.01  E-value=4.5e-05  Score=67.31  Aligned_cols=74  Identities=16%  Similarity=0.139  Sum_probs=61.8

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC-CCcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT-ETRVSTFVCDLISDDLSRQISPSSIDIVTM  152 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~-~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~  152 (523)
                      -++.+|+|+|||.|.-+..++-.+|+.+|+.+|.+..-+...++-.... -.++++++..+++.     ....+||+|++
T Consensus        64 ~~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~-----~~~~~fD~V~s  138 (207)
T d1jsxa_          64 LQGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEF-----PSEPPFDGVIS  138 (207)
T ss_dssp             CCSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTS-----CCCSCEEEEEC
T ss_pred             hcCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCCcceeeeccchhhh-----ccccccceehh
Confidence            3567999999999999999999999999999999999888887744332 35799999999865     23568999999

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=97.98  E-value=6e-06  Score=75.60  Aligned_cols=70  Identities=10%  Similarity=0.110  Sum_probs=57.1

Q ss_pred             HHhhhhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCcc
Q 009871           66 EWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDL  138 (523)
Q Consensus        66 ~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~  138 (523)
                      .+-+.+...++..|||||||+|.++..|++..  .+|++||+++.+++..+++... ..+++++.+|+.+.++
T Consensus        12 ~Iv~~~~~~~~d~vlEIGpG~G~LT~~Ll~~~--~~v~aiEiD~~l~~~L~~~~~~-~~~~~ii~~D~l~~~~   81 (252)
T d1qyra_          12 SIVSAINPQKGQAMVEIGPGLAALTEPVGERL--DQLTVIELDRDLAARLQTHPFL-GPKLTIYQQDAMTFNF   81 (252)
T ss_dssp             HHHHHHCCCTTCCEEEECCTTTTTHHHHHTTC--SCEEEECCCHHHHHHHHTCTTT-GGGEEEECSCGGGCCH
T ss_pred             HHHHhcCCCCCCEEEEECCCchHHHHHHHccC--CceEEEEeccchhHHHHHHhhh-ccchhHHhhhhhhhcc
Confidence            34445555678899999999999999999884  4599999999999999885432 3689999999987754

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.97  E-value=5e-06  Score=79.82  Aligned_cols=78  Identities=17%  Similarity=0.313  Sum_probs=60.8

Q ss_pred             hhcCCCCCeEEEECCCccccHHHHHhh-----CCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCC
Q 009871           70 YFSGAGRKDVLEVGCGAGNTIFPLIAA-----YPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISP  144 (523)
Q Consensus        70 ~~~~~~~~~iLDiGcG~G~~~~~l~~~-----~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  144 (523)
                      ++...++.+|||.|||+|.++..+.++     .+..+++|+|+++.++..|+.+.........+.++|....     .+.
T Consensus       112 ~~~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~~~~~~~d~~~~-----~~~  186 (328)
T d2f8la1         112 VIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLAN-----LLV  186 (328)
T ss_dssp             HHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSC-----CCC
T ss_pred             HhCCCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhhhhhhccccccc-----ccc
Confidence            344467789999999999999888654     2346899999999999999987655455667777776543     346


Q ss_pred             CceeEEEE
Q 009871          145 SSIDIVTM  152 (523)
Q Consensus       145 ~~fD~V~~  152 (523)
                      .+||+|++
T Consensus       187 ~~fD~vi~  194 (328)
T d2f8la1         187 DPVDVVIS  194 (328)
T ss_dssp             CCEEEEEE
T ss_pred             cccccccc
Confidence            78999999

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=97.97  E-value=1.5e-05  Score=71.95  Aligned_cols=125  Identities=15%  Similarity=0.127  Sum_probs=79.5

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhcccc-CCCcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDF-TETRVSTFVCDLISDDLSRQISPSSIDIVTM  152 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~-~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~  152 (523)
                      ....+|+|||+|.|.-+..|+=.+|+.+|+-+|.+..-+...+.-... .-.++.+++..++..... .-..++||+|++
T Consensus        69 ~~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~n~~i~~~R~E~~~~~-~~~~~~~D~v~s  147 (239)
T d1xdza_          69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQR-KDVRESYDIVTA  147 (239)
T ss_dssp             GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTC-TTTTTCEEEEEE
T ss_pred             cCCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCCCCcEEEeehhhhcccc-ccccccceEEEE
Confidence            356799999999999999999889999999999999988777664322 235788888877654211 112458999999


Q ss_pred             ccccccceeeec-ceEEecCCeEEEee---CHHHH---HHHHHhCCCcEEEEEe
Q 009871          153 ERLTGKDQKISE-NFYVRGDGTRAFYF---SNDFL---TSLFKENGFDVEELGL  199 (523)
Q Consensus       153 ~~~~~~~~~~~~-~~~~~~~g~~~~~~---~~~~l---~~ll~~~Gf~~~~~~~  199 (523)
                      ..|......+.- .-+++++|..+++-   ..+|+   .+.+...|++...+..
T Consensus       148 RAva~l~~ll~~~~~~l~~~g~~i~~KG~~~~~El~~a~~~~~~~~~~~~~v~~  201 (239)
T d1xdza_         148 RAVARLSVLSELCLPLVKKNGLFVALKAASAEEELNAGKKAITTLGGELENIHS  201 (239)
T ss_dssp             ECCSCHHHHHHHHGGGEEEEEEEEEEECC-CHHHHHHHHHHHHHTTEEEEEEEE
T ss_pred             hhhhCHHHHHHHHhhhcccCCEEEEECCCChHHHHHHHHHHHHHcCCEEEEEEE
Confidence            222111100000 01344445444432   34444   5567778888766543

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=97.95  E-value=6.6e-06  Score=77.88  Aligned_cols=77  Identities=22%  Similarity=0.255  Sum_probs=63.4

Q ss_pred             CCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccc------cCCCcEEEEEeeccCCccCCCCCCCc
Q 009871           73 GAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKD------FTETRVSTFVCDLISDDLSRQISPSS  146 (523)
Q Consensus        73 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~------~~~~~v~~~~~d~~~~~~~~~~~~~~  146 (523)
                      .+..++||.||.|.|..+..+++..+..+|++||+++.+++.|++...      ...++++++.+|+... +  .-.+++
T Consensus        75 ~~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~-l--~~~~~~  151 (312)
T d1uira_          75 HPEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAY-L--ERTEER  151 (312)
T ss_dssp             SSCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHH-H--HHCCCC
T ss_pred             CCCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHH-h--hhcCCc
Confidence            467889999999999999999988777899999999999999998652      2357899999998752 1  113568


Q ss_pred             eeEEEE
Q 009871          147 IDIVTM  152 (523)
Q Consensus       147 fD~V~~  152 (523)
                      ||+|++
T Consensus       152 yDvIi~  157 (312)
T d1uira_         152 YDVVII  157 (312)
T ss_dssp             EEEEEE
T ss_pred             ccEEEE
Confidence            999998

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.95  E-value=4e-06  Score=75.24  Aligned_cols=80  Identities=18%  Similarity=0.195  Sum_probs=63.1

Q ss_pred             CCCCCeEEEECCCccccHHHHHhhCC-CCEEEEEeCCHHHHHHHHhcccc--CCCcEEEEEeeccCCc--cCCCCCCCce
Q 009871           73 GAGRKDVLEVGCGAGNTIFPLIAAYP-DVFVYACDFSPRAVNLVMTHKDF--TETRVSTFVCDLISDD--LSRQISPSSI  147 (523)
Q Consensus        73 ~~~~~~iLDiGcG~G~~~~~l~~~~~-~~~v~gvD~S~~~l~~a~~~~~~--~~~~v~~~~~d~~~~~--~~~~~~~~~f  147 (523)
                      ..+.++|||||||+|..+..+++..+ +++|+.+|.++...+.|+++...  ...+++++.+|+.+.-  +......++|
T Consensus        57 ~~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~~~~f  136 (219)
T d2avda1          57 LIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTF  136 (219)
T ss_dssp             HTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCE
T ss_pred             ccCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhhcccCCc
Confidence            35688999999999999999998854 78999999999999999997643  2467999999975420  1011235789


Q ss_pred             eEEEE
Q 009871          148 DIVTM  152 (523)
Q Consensus       148 D~V~~  152 (523)
                      |+|+.
T Consensus       137 D~ifi  141 (219)
T d2avda1         137 DVAVV  141 (219)
T ss_dssp             EEEEE
T ss_pred             cEEEE
Confidence            99987

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.92  E-value=1.9e-05  Score=73.16  Aligned_cols=80  Identities=26%  Similarity=0.314  Sum_probs=61.7

Q ss_pred             HHHhhhhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC--CCcEEEEEeeccCCccCCCC
Q 009871           65 KEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISDDLSRQI  142 (523)
Q Consensus        65 ~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~~~~~~  142 (523)
                      ..+-+.+...++..|||||+|+|.++..|+++.  .+|++||+++.+++..++.....  ..+++++.+|+...+++   
T Consensus        11 ~kIv~~~~~~~~d~VlEIGPG~G~LT~~Ll~~~--~~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~~~---   85 (278)
T d1zq9a1          11 NSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKA--KKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLP---   85 (278)
T ss_dssp             HHHHHHTCCCTTCEEEEECCTTSTTHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCC---
T ss_pred             HHHHHHhCCCCCCEEEEECCCchHHHHHHHhcC--CcEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhhhhh---
Confidence            333344555678899999999999999999984  57999999999999998865332  36899999999876432   


Q ss_pred             CCCceeEEEE
Q 009871          143 SPSSIDIVTM  152 (523)
Q Consensus       143 ~~~~fD~V~~  152 (523)
                         .++.|++
T Consensus        86 ---~~~~vV~   92 (278)
T d1zq9a1          86 ---FFDTCVA   92 (278)
T ss_dssp             ---CCSEEEE
T ss_pred             ---hhhhhhc
Confidence               2455666

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.86  E-value=5.6e-06  Score=77.12  Aligned_cols=75  Identities=13%  Similarity=0.144  Sum_probs=60.4

Q ss_pred             CCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhcccc-----------CCCcEEEEEeeccCCccCCC
Q 009871           73 GAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDF-----------TETRVSTFVCDLISDDLSRQ  141 (523)
Q Consensus        73 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~-----------~~~~v~~~~~d~~~~~~~~~  141 (523)
                      .+++.+||.||+|.|..+..+++.. ..+|++||+++.+++.|++....           ..++++++.+|+... +   
T Consensus        70 ~~~p~~vLiiG~G~G~~~~~~l~~~-~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~-l---  144 (276)
T d1mjfa_          70 HPKPKRVLVIGGGDGGTVREVLQHD-VDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEF-I---  144 (276)
T ss_dssp             SSCCCEEEEEECTTSHHHHHHTTSC-CSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHH-H---
T ss_pred             CCCCceEEEecCCchHHHHHHHHhC-CceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHH-H---
Confidence            3678899999999999999888764 46899999999999999985421           247899999998743 1   


Q ss_pred             CCCCceeEEEE
Q 009871          142 ISPSSIDIVTM  152 (523)
Q Consensus       142 ~~~~~fD~V~~  152 (523)
                      -.+++||+|++
T Consensus       145 ~~~~~yDvIi~  155 (276)
T d1mjfa_         145 KNNRGFDVIIA  155 (276)
T ss_dssp             HHCCCEEEEEE
T ss_pred             hccCCCCEEEE
Confidence            12568999998

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=97.84  E-value=7.7e-05  Score=68.96  Aligned_cols=136  Identities=11%  Similarity=0.070  Sum_probs=87.6

Q ss_pred             CCCeEEEECCCccHHHHHHHhc-CCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCC
Q 009871          335 AGKKVLELGCGCGGICSMVAAG-SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG  413 (523)
Q Consensus       335 ~~~~VLElG~G~G~l~~~~a~~-~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~  413 (523)
                      ..++||-||-|.|..+..+++. +..+|+++|+++.+++.+++-...+.......++.+...|..     .-+. ....+
T Consensus        75 ~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~-----~~l~-~~~~~  148 (274)
T d1iy9a_          75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGF-----MHIA-KSENQ  148 (274)
T ss_dssp             SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSH-----HHHH-TCCSC
T ss_pred             CcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHH-----HHHh-hcCCC
Confidence            4579999999999888887776 457999999999999999987765543334467776543321     1122 23568


Q ss_pred             ccEEEEc--cccCCCC--ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChh---HHHHHHHHcCCEEEEEcCC
Q 009871          414 FEVILGT--DVSYIPE--AILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEP---SMLSAATQCGFRLVDKWPS  486 (523)
Q Consensus       414 fD~Ii~~--d~~y~~~--~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~---~~~~~~~~~gf~~~~~~~~  486 (523)
                      ||+|+.-  |......  .-..+++.+++.|         +|+|.++.-...-.....   .+...+++. |.....+..
T Consensus       149 yDvIi~D~~~p~~~~~~L~t~eFy~~~~~~L---------~~~Gv~v~q~~s~~~~~~~~~~i~~tl~~~-F~~v~~y~~  218 (274)
T d1iy9a_         149 YDVIMVDSTEPVGPAVNLFTKGFYAGIAKAL---------KEDGIFVAQTDNPWFTPELITNVQRDVKEI-FPITKLYTA  218 (274)
T ss_dssp             EEEEEESCSSCCSCCCCCSTTHHHHHHHHHE---------EEEEEEEEECCCTTTCHHHHHHHHHHHHTT-CSEEEEEEE
T ss_pred             CCEEEEcCCCCCCcchhhccHHHHHHHHhhc---------CCCceEEEecCCccccHHHHHHHHHhhhhh-cCceEEEEE
Confidence            9999963  1111111  2567899999999         668887764333222222   344555555 554555544

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.83  E-value=5.3e-05  Score=70.44  Aligned_cols=132  Identities=19%  Similarity=0.133  Sum_probs=83.8

Q ss_pred             CCCeEEEECCCccHHHHHHHhc-CCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCC
Q 009871          335 AGKKVLELGCGCGGICSMVAAG-SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG  413 (523)
Q Consensus       335 ~~~~VLElG~G~G~l~~~~a~~-~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~  413 (523)
                      ..++||=||-|.|+++..+.+. ...+|+++|+++.+++.+++-...+.......++++...|..     .-+ .....+
T Consensus        78 ~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~-----~~l-~~~~~~  151 (285)
T d2o07a1          78 NPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGF-----EFM-KQNQDA  151 (285)
T ss_dssp             SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHH-----HHH-HTCSSC
T ss_pred             CcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHH-----HHH-hcCCCC
Confidence            4479999999999888888776 467999999999999999886654322223357776644322     111 123568


Q ss_pred             ccEEEEccccCCCC-----ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChh---HHHHHHHHcCCEEEEE
Q 009871          414 FEVILGTDVSYIPE-----AILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEP---SMLSAATQCGFRLVDK  483 (523)
Q Consensus       414 fD~Ii~~d~~y~~~-----~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~---~~~~~~~~~gf~~~~~  483 (523)
                      ||+|+. |+.-...     .-..+++.+++.|         +|+|.+++-.........   .+...+++. |.....
T Consensus       152 yDvIi~-D~~~p~~~~~~L~t~eF~~~~~~~L---------~~~Gi~v~q~~s~~~~~~~~~~~~~tl~~~-F~~v~~  218 (285)
T d2o07a1         152 FDVIIT-DSSDPMGPAESLFKESYYQLMKTAL---------KEDGVLCCQGECQWLHLDLIKEMRQFCQSL-FPVVAY  218 (285)
T ss_dssp             EEEEEE-ECC-----------CHHHHHHHHHE---------EEEEEEEEEEECTTTCHHHHHHHHHHHHHH-CSEEEE
T ss_pred             CCEEEE-cCCCCCCcccccccHHHHHHHHHhc---------CCCCeEEEeccchhhhHHHHHHHHHHHHhc-CCeeeE
Confidence            999997 4322111     2335688899999         669988775544333332   233445444 555554

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.82  E-value=4.3e-05  Score=71.28  Aligned_cols=134  Identities=13%  Similarity=0.072  Sum_probs=86.0

Q ss_pred             CCCeEEEECCCccHHHHHHHhcC-CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCC
Q 009871          335 AGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG  413 (523)
Q Consensus       335 ~~~~VLElG~G~G~l~~~~a~~~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~  413 (523)
                      ..++||-||.|.|+++..+++.. ..+|+++|+++.+++.+++-+..+.......++++...|...     -+. -...+
T Consensus        89 ~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~-----~l~-~~~~~  162 (295)
T d1inla_          89 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAE-----YVR-KFKNE  162 (295)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHH-----HGG-GCSSC
T ss_pred             CCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHH-----HHh-cCCCC
Confidence            34799999999998887877764 568999999999999999876554322233567666543321     122 23568


Q ss_pred             ccEEEEccccC---CC---CChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChh---HHHHHHHHcCCEEEEEc
Q 009871          414 FEVILGTDVSY---IP---EAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEP---SMLSAATQCGFRLVDKW  484 (523)
Q Consensus       414 fD~Ii~~d~~y---~~---~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~---~~~~~~~~~gf~~~~~~  484 (523)
                      ||+|+. |+.-   .+   -.-..+++.+++.|         +|+|.+++-...-.....   .+.+.+++. |.....+
T Consensus       163 yDvIi~-D~~dp~~~~~~~L~t~efy~~~~~~L---------~~~Gi~v~q~~sp~~~~~~~~~i~~tl~~v-F~~v~~y  231 (295)
T d1inla_         163 FDVIII-DSTDPTAGQGGHLFTEEFYQACYDAL---------KEDGVFSAETEDPFYDIGWFKLAYRRISKV-FPITRVY  231 (295)
T ss_dssp             EEEEEE-EC----------CCSHHHHHHHHHHE---------EEEEEEEEECCCTTTTHHHHHHHHHHHHHH-CSEEEEE
T ss_pred             CCEEEE-cCCCCCcCchhhhccHHHHHHHHhhc---------CCCcEEEEecCChhhhhHHHHHHHHHHHhh-cceeEEE
Confidence            999996 3321   11   12468899999999         668987764433222332   344555565 5555544


Q ss_pred             C
Q 009871          485 P  485 (523)
Q Consensus       485 ~  485 (523)
                      .
T Consensus       232 ~  232 (295)
T d1inla_         232 L  232 (295)
T ss_dssp             E
T ss_pred             E
Confidence            3

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.82  E-value=6.3e-05  Score=70.11  Aligned_cols=132  Identities=16%  Similarity=0.069  Sum_probs=85.8

Q ss_pred             CCCeEEEECCCccHHHHHHHhc-CCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCC
Q 009871          335 AGKKVLELGCGCGGICSMVAAG-SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG  413 (523)
Q Consensus       335 ~~~~VLElG~G~G~l~~~~a~~-~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~  413 (523)
                      .-++||=||-|.|+++..+++. ...+|+++|+++++++.+++-...+.......++++...|-     ..-+.....++
T Consensus        80 ~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da-----~~~l~~~~~~~  154 (290)
T d1xj5a_          80 NPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDG-----VAFLKNAAEGS  154 (290)
T ss_dssp             CCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCH-----HHHHHTSCTTC
T ss_pred             CCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccH-----HHHHhhccccC
Confidence            4479999999999888888776 44689999999999999988654432222235666554332     22222333468


Q ss_pred             ccEEEEccccCCCC-----ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChh---HHHHHHHHcCCEEE
Q 009871          414 FEVILGTDVSYIPE-----AILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEP---SMLSAATQCGFRLV  481 (523)
Q Consensus       414 fD~Ii~~d~~y~~~-----~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~---~~~~~~~~~gf~~~  481 (523)
                      ||+||. |+.-...     .-..+++.+++.|         +|+|.+++-.........   .+.+.+++....+.
T Consensus       155 yDvIi~-D~~dp~~~~~~L~t~eF~~~~~~~L---------~~~Gi~v~q~~s~~~~~~~~~~i~~~l~~vF~~~~  220 (290)
T d1xj5a_         155 YDAVIV-DSSDPIGPAKELFEKPFFQSVARAL---------RPGGVVCTQAESLWLHMDIIEDIVSNCREIFKGSV  220 (290)
T ss_dssp             EEEEEE-CCCCTTSGGGGGGSHHHHHHHHHHE---------EEEEEEEEECCCTTTCHHHHHHHHHHHHHHCSSCE
T ss_pred             ccEEEE-cCCCCCCcchhhCCHHHHHHHHHhc---------CCCcEEEEecCCcHHHHHHHHHHHhhhhhhcccce
Confidence            999997 4432111     2356899999999         669988875544333433   34556666654443

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.82  E-value=1.7e-05  Score=68.64  Aligned_cols=85  Identities=11%  Similarity=-0.001  Sum_probs=67.6

Q ss_pred             hHHHHhhhhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCcc-CCC
Q 009871           63 LDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDL-SRQ  141 (523)
Q Consensus        63 l~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~-~~~  141 (523)
                      +..++-+++.+.++..++|..||.|.++..+++.  +++|+|+|..+.|+..|++..   ..++.+++.+..+++- ...
T Consensus         6 ll~Evl~~l~~~~g~~~vD~T~G~GGhs~~iL~~--~~~viaiD~D~~ai~~a~~~~---~~~~~~~~~~f~~~~~~l~~   80 (182)
T d1wg8a2           6 LYQEALDLLAVRPGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKGLH---LPGLTVVQGNFRHLKRHLAA   80 (182)
T ss_dssp             THHHHHHHHTCCTTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHTC---CTTEEEEESCGGGHHHHHHH
T ss_pred             HHHHHHHhcCCCCCCEEEEeCCCCcHHHHHHhcc--cCcEEEEhhhhhHHHHHhhcc---ccceeEeehHHHHHHHHHHH
Confidence            5667767777789999999999999999999997  568999999999999998753   3678999988775421 001


Q ss_pred             CCCCceeEEEE
Q 009871          142 ISPSSIDIVTM  152 (523)
Q Consensus       142 ~~~~~fD~V~~  152 (523)
                      ...+.+|.|+.
T Consensus        81 ~~~~~vdgIl~   91 (182)
T d1wg8a2          81 LGVERVDGILA   91 (182)
T ss_dssp             TTCSCEEEEEE
T ss_pred             cCCCccCEEEE
Confidence            23467999998

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.80  E-value=3.1e-05  Score=71.65  Aligned_cols=88  Identities=19%  Similarity=0.194  Sum_probs=64.6

Q ss_pred             HHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcc
Q 009871          324 AAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHI  403 (523)
Q Consensus       324 a~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~  403 (523)
                      ++.+.+.....++..|||+|+|+|.++..++..+ ++|+++++|+.+++.+++++..+...   .++.+...|+-+.+  
T Consensus        10 ~~kIv~~~~~~~~d~VlEIGPG~G~LT~~Ll~~~-~~v~aiE~D~~l~~~L~~~~~~~~~~---~~~~~i~~D~l~~~--   83 (278)
T d1zq9a1          10 INSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKA-KKVVACELDPRLVAELHKRVQGTPVA---SKLQVLVGDVLKTD--   83 (278)
T ss_dssp             HHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHHS-SEEEEEESCHHHHHHHHHHHTTSTTG---GGEEEEESCTTTSC--
T ss_pred             HHHHHHHhCCCCCCEEEEECCCchHHHHHHHhcC-CcEEEEEEccchhHHHHHHHhhhccc---cchhhhHHHHhhhh--
Confidence            4444444455678899999999999999999886 58999999999999999887654332   56777776665442  


Q ss_pred             hhhhhhcCCCccEEEEccccCC
Q 009871          404 EAIKEENNEGFEVILGTDVSYI  425 (523)
Q Consensus       404 ~~~~~~~~~~fD~Ii~~d~~y~  425 (523)
                             ...++.||++ +.|+
T Consensus        84 -------~~~~~~vV~N-LPY~   97 (278)
T d1zq9a1          84 -------LPFFDTCVAN-LPYQ   97 (278)
T ss_dssp             -------CCCCSEEEEE-CCGG
T ss_pred             -------hhhhhhhhcc-hHHH
Confidence                   1346678876 4454

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=97.79  E-value=6e-05  Score=70.58  Aligned_cols=133  Identities=19%  Similarity=0.138  Sum_probs=82.1

Q ss_pred             CCCeEEEECCCccHHHHHHHhcC-CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCC
Q 009871          335 AGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG  413 (523)
Q Consensus       335 ~~~~VLElG~G~G~l~~~~a~~~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~  413 (523)
                      ..++||-||-|.|+++..+++.. ..+|+++|+++.+++.+++-...+.......++++..-|-     ..-+. ....+
T Consensus       106 ~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da-----~~~l~-~~~~~  179 (312)
T d2b2ca1         106 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDG-----FEFLK-NHKNE  179 (312)
T ss_dssp             SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCH-----HHHHH-HCTTC
T ss_pred             CCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchH-----HHHHH-hCCCC
Confidence            44699999999998888888764 4699999999999999998665443322345666653322     22222 24578


Q ss_pred             ccEEEEccccCC---CC--ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChh---HHHHHHHHcCCEEEEEc
Q 009871          414 FEVILGTDVSYI---PE--AILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEP---SMLSAATQCGFRLVDKW  484 (523)
Q Consensus       414 fD~Ii~~d~~y~---~~--~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~---~~~~~~~~~gf~~~~~~  484 (523)
                      ||+||. |+.-.   ..  .-..+++.+++.|         +|+|.++.-...-....+   .+...+++. |.....+
T Consensus       180 yDvII~-D~~dp~~~~~~L~t~eFy~~~~~~L---------~~~Gi~v~q~~s~~~~~~~~~~i~~~l~~v-F~~v~~y  247 (312)
T d2b2ca1         180 FDVIIT-DSSDPVGPAESLFGQSYYELLRDAL---------KEDGILSSQGESVWLHLPLIAHLVAFNRKI-FPAVTYA  247 (312)
T ss_dssp             EEEEEE-CCC-------------HHHHHHHHE---------EEEEEEEEECCCTTTCHHHHHHHHHHHHHH-CSEEEEE
T ss_pred             CCEEEE-cCCCCCCcchhhhhHHHHHHHHhhc---------CCCcEEEEecCChHHhHHHHHHHHHHhhhc-cceEEEe
Confidence            999996 33211   11  2356788999999         668888775433233332   334445554 5444443

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.77  E-value=1.3e-05  Score=74.90  Aligned_cols=77  Identities=14%  Similarity=0.236  Sum_probs=63.2

Q ss_pred             CCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccc-----cCCCcEEEEEeeccCCccCCCCCCCce
Q 009871           73 GAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKD-----FTETRVSTFVCDLISDDLSRQISPSSI  147 (523)
Q Consensus        73 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~-----~~~~~v~~~~~d~~~~~~~~~~~~~~f  147 (523)
                      .+.+++||-||.|.|..+..+++..+..+|++||+++.+++.|++...     ...++++++.+|+... +  .-.+++|
T Consensus        87 ~~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~-l--~~~~~~y  163 (295)
T d1inla_          87 HPNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEY-V--RKFKNEF  163 (295)
T ss_dssp             SSSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHH-G--GGCSSCE
T ss_pred             CCCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHH-H--hcCCCCC
Confidence            367889999999999999999988767789999999999999998652     2357899999998753 1  1235689


Q ss_pred             eEEEE
Q 009871          148 DIVTM  152 (523)
Q Consensus       148 D~V~~  152 (523)
                      |+|++
T Consensus       164 DvIi~  168 (295)
T d1inla_         164 DVIII  168 (295)
T ss_dssp             EEEEE
T ss_pred             CEEEE
Confidence            99998

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=97.72  E-value=9.7e-05  Score=66.45  Aligned_cols=130  Identities=12%  Similarity=0.061  Sum_probs=79.7

Q ss_pred             CCCCeEEEECCCccHHHHHHHhc-CCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCC
Q 009871          334 VAGKKVLELGCGCGGICSMVAAG-SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNE  412 (523)
Q Consensus       334 ~~~~~VLElG~G~G~l~~~~a~~-~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~  412 (523)
                      ..+.+|+|+|||.|.-|+.+|-. ...+|+++|.+..=+..++.-+..-++.    .+.+..-..   +..... .-...
T Consensus        69 ~~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~----n~~i~~~R~---E~~~~~-~~~~~  140 (239)
T d1xdza_          69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLE----NTTFCHDRA---ETFGQR-KDVRE  140 (239)
T ss_dssp             GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCS----SEEEEESCH---HHHTTC-TTTTT
T ss_pred             cCCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCCC----CcEEEeehh---hhcccc-ccccc
Confidence            35679999999999555555543 4569999999987777776655554442    333332211   111000 01135


Q ss_pred             CccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCCh--hHHHHHHHHcCCEEEEEcC
Q 009871          413 GFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDE--PSMLSAATQCGFRLVDKWP  485 (523)
Q Consensus       413 ~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~--~~~~~~~~~~gf~~~~~~~  485 (523)
                      +||+|++-    -...+..++.....++         +++|.+++.-.. ....  ......+...|+++..+..
T Consensus       141 ~~D~v~sR----Ava~l~~ll~~~~~~l---------~~~g~~i~~KG~-~~~~El~~a~~~~~~~~~~~~~v~~  201 (239)
T d1xdza_         141 SYDIVTAR----AVARLSVLSELCLPLV---------KKNGLFVALKAA-SAEEELNAGKKAITTLGGELENIHS  201 (239)
T ss_dssp             CEEEEEEE----CCSCHHHHHHHHGGGE---------EEEEEEEEEECC--CHHHHHHHHHHHHHTTEEEEEEEE
T ss_pred             cceEEEEh----hhhCHHHHHHHHhhhc---------ccCCEEEEECCC-ChHHHHHHHHHHHHHcCCEEEEEEE
Confidence            89999986    3356888888888898         557776654433 2221  2334456678998876643

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=97.72  E-value=0.00041  Score=59.66  Aligned_cols=145  Identities=12%  Similarity=0.140  Sum_probs=92.0

Q ss_pred             hHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhc--CCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeee
Q 009871          319 SAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAG--SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLE  396 (523)
Q Consensus       319 ~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~--~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ld  396 (523)
                      |+.-|.+......-+.++.+||||||+.|+.+-.++..  ....|+++|+.+.           +    ....+.+...+
T Consensus         6 aafKL~EI~~k~~l~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~-----------~----~i~~~~~~~~d   70 (180)
T d1ej0a_           6 AWFKLDEIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM-----------D----PIVGVDFLQGD   70 (180)
T ss_dssp             HHHHHHHHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC-----------C----CCTTEEEEESC
T ss_pred             HHHHHHHHHHHhCccCCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc-----------c----ccCCceEeecc
Confidence            56667776666655668889999999999998877765  3458999998651           1    12445555655


Q ss_pred             cCCCCcchhhh-hhcCCCccEEEEccccCCCC------------ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecC
Q 009871          397 WGNRDHIEAIK-EENNEGFEVILGTDVSYIPE------------AILPLFATAKELTASSNKSLREDQQPAFILCHIFRQ  463 (523)
Q Consensus       397 w~~~~~~~~~~-~~~~~~fD~Ii~~d~~y~~~------------~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~  463 (523)
                      ..+........ .....++|+|++ |.--+..            .....+..+.++|         ++||.+++=... .
T Consensus        71 ~~~~~~~~~~~~~~~~~~~DlVlS-D~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~L---------k~gG~fV~K~F~-g  139 (180)
T d1ej0a_          71 FRDELVMKALLERVGDSKVQVVMS-DMAPNMSGTPAVDIPRAMYLVELALEMCRDVL---------APGGSFVVKVFQ-G  139 (180)
T ss_dssp             TTSHHHHHHHHHHHTTCCEEEEEE-CCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHE---------EEEEEEEEEEES-S
T ss_pred             cccchhhhhhhhhccCcceeEEEe-cccchhcccchhHHHHHHHHHHHHHHhhhhcc---------CCCCcEEEEEec-C
Confidence            55433222221 234568999997 4333321            2344555666777         568888875443 4


Q ss_pred             CChhHHHHHHHHcCCEEEEEcCCCCCC
Q 009871          464 VDEPSMLSAATQCGFRLVDKWPSKNSA  490 (523)
Q Consensus       464 ~~~~~~~~~~~~~gf~~~~~~~~~~~~  490 (523)
                      .....++..++.. |+-..+..+.++.
T Consensus       140 ~~~~~l~~~l~~~-F~~V~~~KP~aSR  165 (180)
T d1ej0a_         140 EGFDEYLREIRSL-FTKVKVRKPDSSR  165 (180)
T ss_dssp             TTHHHHHHHHHHH-EEEEEEECCTTSC
T ss_pred             ccHHHHHHHHHhh-cCEEEEECCCCcc
Confidence            5566777777665 7766776654443

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=97.70  E-value=1.4e-06  Score=79.54  Aligned_cols=89  Identities=17%  Similarity=0.187  Sum_probs=59.4

Q ss_pred             HHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcc
Q 009871          324 AAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHI  403 (523)
Q Consensus       324 a~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~  403 (523)
                      .+.+.+.....++.+|||||||+|.++..++..+ .+|+++|+|+.+++.++.+...      ..++.+...|.-+.   
T Consensus        18 i~kIv~~~~~~~~d~VLEIGpG~G~LT~~L~~~~-~~v~aIE~D~~l~~~l~~~~~~------~~n~~ii~~D~l~~---   87 (245)
T d1yuba_          18 LNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKIS-KQVTSIELDSHLFNLSSEKLKL------NTRVTLIHQDILQF---   87 (245)
T ss_dssp             HHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHHS-SEEEESSSSCSSSSSSSCTTTT------CSEEEECCSCCTTT---
T ss_pred             HHHHHHhcCCCCCCeEEEECCCccHHHHHHHhhc-CceeEeeecccchhhhhhhhhh------ccchhhhhhhhhcc---
Confidence            3444444455678899999999999999998875 6899999999888877654322      13455554444332   


Q ss_pred             hhhhhhcCCCccEEEEccccCCCC
Q 009871          404 EAIKEENNEGFEVILGTDVSYIPE  427 (523)
Q Consensus       404 ~~~~~~~~~~fD~Ii~~d~~y~~~  427 (523)
                          +++...++.|+++ +.|+..
T Consensus        88 ----~~~~~~~~~vv~N-LPY~Is  106 (245)
T d1yuba_          88 ----QFPNKQRYKIVGN-IPYHLS  106 (245)
T ss_dssp             ----TCCCSSEEEEEEE-CCSSSC
T ss_pred             ----ccccceeeeEeee-eehhhh
Confidence                2334456666664 566654

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=97.70  E-value=1.4e-05  Score=71.95  Aligned_cols=79  Identities=15%  Similarity=0.227  Sum_probs=62.2

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCC-CCEEEEEeCCHHHHHHHHhccccC--CCcEEEEEeeccCC--cc-CCCCCCCce
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYP-DVFVYACDFSPRAVNLVMTHKDFT--ETRVSTFVCDLISD--DL-SRQISPSSI  147 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~-~~~v~gvD~S~~~l~~a~~~~~~~--~~~v~~~~~d~~~~--~~-~~~~~~~~f  147 (523)
                      .+.++|||||+++|..+..+++..| +++|+.+|.+++..+.|+++....  ..+++++.+|+.+.  .+ ......++|
T Consensus        58 ~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~~~~f  137 (227)
T d1susa1          58 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSY  137 (227)
T ss_dssp             HTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCGGGTTCB
T ss_pred             cCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHHhccccCCce
Confidence            4678999999999999999998854 789999999999999999976432  35799999998642  00 001135689


Q ss_pred             eEEEE
Q 009871          148 DIVTM  152 (523)
Q Consensus       148 D~V~~  152 (523)
                      |+|+.
T Consensus       138 D~iFi  142 (227)
T d1susa1         138 DFIFV  142 (227)
T ss_dssp             SEEEE
T ss_pred             eEEEe
Confidence            99977

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=97.69  E-value=7.9e-05  Score=65.67  Aligned_cols=100  Identities=11%  Similarity=0.101  Sum_probs=69.7

Q ss_pred             CCCeEEEECCCccHHHHHHHhcCC-CEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCC
Q 009871          335 AGKKVLELGCGCGGICSMVAAGSA-DLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG  413 (523)
Q Consensus       335 ~~~~VLElG~G~G~l~~~~a~~~~-~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~  413 (523)
                      ++.+|||+|||.|.-|..+|-..+ .+|+++|.+..-+..++.-+..-++    .++.+..-+..+..        ...+
T Consensus        65 ~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L----~nv~v~~~R~E~~~--------~~~~  132 (207)
T d1jsxa_          65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKL----ENIEPVQSRVEEFP--------SEPP  132 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTC----SSEEEEECCTTTSC--------CCSC
T ss_pred             cCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCC----cceeeeccchhhhc--------cccc
Confidence            567999999999955555555554 5999999999888888876666444    34565544433321        2358


Q ss_pred             ccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEE
Q 009871          414 FEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCH  459 (523)
Q Consensus       414 fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~  459 (523)
                      ||+|++.-+    ..+..++..+..++         +++|.+++.-
T Consensus       133 fD~V~sRA~----~~~~~ll~~~~~~l---------~~~g~~~~~K  165 (207)
T d1jsxa_         133 FDGVISRAF----ASLNDMVSWCHHLP---------GEQGRFYALK  165 (207)
T ss_dssp             EEEEECSCS----SSHHHHHHHHTTSE---------EEEEEEEEEE
T ss_pred             cceehhhhh----cCHHHHHHHHHHhc---------CCCcEEEEEC
Confidence            999998533    45778888888888         5577776654

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.67  E-value=4.3e-05  Score=71.04  Aligned_cols=79  Identities=14%  Similarity=0.272  Sum_probs=63.9

Q ss_pred             hcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccc-----cCCCcEEEEEeeccCCccCCCCCCC
Q 009871           71 FSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKD-----FTETRVSTFVCDLISDDLSRQISPS  145 (523)
Q Consensus        71 ~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~-----~~~~~v~~~~~d~~~~~~~~~~~~~  145 (523)
                      ...+.+++||-||-|.|..+..+++..+..+|+.||+++++++.|++...     ...++++++.+|+... +.  -..+
T Consensus        74 ~~~~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~-l~--~~~~  150 (285)
T d2o07a1          74 CSHPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEF-MK--QNQD  150 (285)
T ss_dssp             TTSSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHH-HH--TCSS
T ss_pred             hhCcCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHH-Hh--cCCC
Confidence            34467889999999999999999987667789999999999999998652     2458999999998642 11  1246


Q ss_pred             ceeEEEE
Q 009871          146 SIDIVTM  152 (523)
Q Consensus       146 ~fD~V~~  152 (523)
                      +||+|++
T Consensus       151 ~yDvIi~  157 (285)
T d2o07a1         151 AFDVIIT  157 (285)
T ss_dssp             CEEEEEE
T ss_pred             CCCEEEE
Confidence            8999999

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=97.63  E-value=2.6e-05  Score=69.93  Aligned_cols=73  Identities=15%  Similarity=0.167  Sum_probs=54.7

Q ss_pred             HhhhhcCCCCCeEEEECCCccccHHHHHhh-CCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCC
Q 009871           67 WGRYFSGAGRKDVLEVGCGAGNTIFPLIAA-YPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPS  145 (523)
Q Consensus        67 ~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  145 (523)
                      +.+++...++.+|||.|||+|.++..+.++ .....++|+|+++.++..++        ....+++|....     ....
T Consensus        11 m~~l~~~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~~--------~~~~~~~~~~~~-----~~~~   77 (223)
T d2ih2a1          11 MVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLPP--------WAEGILADFLLW-----EPGE   77 (223)
T ss_dssp             HHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCCT--------TEEEEESCGGGC-----CCSS
T ss_pred             HHHhcCCCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhcc--------cceeeeeehhcc-----cccc
Confidence            344555577889999999999999888876 44578999999998764433        346677777643     2356


Q ss_pred             ceeEEEE
Q 009871          146 SIDIVTM  152 (523)
Q Consensus       146 ~fD~V~~  152 (523)
                      .||+|++
T Consensus        78 ~fd~ii~   84 (223)
T d2ih2a1          78 AFDLILG   84 (223)
T ss_dssp             CEEEEEE
T ss_pred             ccceecc
Confidence            8999999

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=97.62  E-value=4.1e-05  Score=70.86  Aligned_cols=77  Identities=18%  Similarity=0.218  Sum_probs=63.1

Q ss_pred             CCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccc-----cCCCcEEEEEeeccCCccCCCCCCCce
Q 009871           73 GAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKD-----FTETRVSTFVCDLISDDLSRQISPSSI  147 (523)
Q Consensus        73 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~-----~~~~~v~~~~~d~~~~~~~~~~~~~~f  147 (523)
                      .+++++||-||-|.|..+..+++..+..+|+.||+++++++.|++...     ...++++++.+|.... +  .-.+++|
T Consensus        73 ~~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~-l--~~~~~~y  149 (274)
T d1iy9a_          73 HPNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMH-I--AKSENQY  149 (274)
T ss_dssp             SSSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHH-H--HTCCSCE
T ss_pred             cCCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHH-H--hhcCCCC
Confidence            367789999999999999999988666789999999999999999652     2457899999998652 1  1135689


Q ss_pred             eEEEE
Q 009871          148 DIVTM  152 (523)
Q Consensus       148 D~V~~  152 (523)
                      |+|++
T Consensus       150 DvIi~  154 (274)
T d1iy9a_         150 DVIMV  154 (274)
T ss_dssp             EEEEE
T ss_pred             CEEEE
Confidence            99999

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.59  E-value=4.5e-05  Score=71.17  Aligned_cols=78  Identities=19%  Similarity=0.256  Sum_probs=63.0

Q ss_pred             CCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccc-----cCCCcEEEEEeeccCCccCCCCCCCce
Q 009871           73 GAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKD-----FTETRVSTFVCDLISDDLSRQISPSSI  147 (523)
Q Consensus        73 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~-----~~~~~v~~~~~d~~~~~~~~~~~~~~f  147 (523)
                      .+..++||-||-|.|..+..+++..+-.+|++||+++++++.|++...     ...++++.+.+|.... +. ...+++|
T Consensus        78 ~~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~-l~-~~~~~~y  155 (290)
T d1xj5a_          78 IPNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAF-LK-NAAEGSY  155 (290)
T ss_dssp             SSCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHH-HH-TSCTTCE
T ss_pred             CCCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHH-Hh-hccccCc
Confidence            357789999999999999999988766789999999999999998642     2368899999997642 10 1235689


Q ss_pred             eEEEE
Q 009871          148 DIVTM  152 (523)
Q Consensus       148 D~V~~  152 (523)
                      |+|++
T Consensus       156 DvIi~  160 (290)
T d1xj5a_         156 DAVIV  160 (290)
T ss_dssp             EEEEE
T ss_pred             cEEEE
Confidence            99998

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=97.57  E-value=5.5e-05  Score=65.68  Aligned_cols=76  Identities=12%  Similarity=0.122  Sum_probs=57.0

Q ss_pred             CCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccC---CCcEEEEEeeccCCccCCCCCCCceeEEE
Q 009871           75 GRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFT---ETRVSTFVCDLISDDLSRQISPSSIDIVT  151 (523)
Q Consensus        75 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~---~~~v~~~~~d~~~~~~~~~~~~~~fD~V~  151 (523)
                      .+.+|||+-||||.++...+.++. .+|+.||.+..+++..+++.+..   .....+...|+.+. +........||+|+
T Consensus        43 ~~~~vLDlFaGsG~~glEalSRGA-~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~-l~~~~~~~~fDlIF  120 (183)
T d2ifta1          43 HQSECLDGFAGSGSLGFEALSRQA-KKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDF-LKQPQNQPHFDVVF  120 (183)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHH-TTSCCSSCCEEEEE
T ss_pred             ccceEeecccCccceeeeeeeecc-eeeEEeecccchhhhHhhHHhhhccccccccccccccccc-ccccccCCcccEEE
Confidence            567999999999999999999963 48999999999999999986432   23566666665431 11123355799997


Q ss_pred             E
Q 009871          152 M  152 (523)
Q Consensus       152 ~  152 (523)
                      +
T Consensus       121 l  121 (183)
T d2ifta1         121 L  121 (183)
T ss_dssp             E
T ss_pred             e
Confidence            7

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.57  E-value=5.7e-05  Score=70.43  Aligned_cols=80  Identities=10%  Similarity=0.143  Sum_probs=59.2

Q ss_pred             hhcCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCC-cEEEEEeeccCCccCCCCCCCcee
Q 009871           70 YFSGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTET-RVSTFVCDLISDDLSRQISPSSID  148 (523)
Q Consensus        70 ~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~fD  148 (523)
                      ++...++.+|||+++|.|.=+..+++...+..|+++|+++.-+...+++.+..+. ++.....|....   .....+.||
T Consensus        97 ~L~~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~~~~~---~~~~~~~fd  173 (284)
T d1sqga2          97 WLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPS---QWCGEQQFD  173 (284)
T ss_dssp             HHCCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTH---HHHTTCCEE
T ss_pred             ccCccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccccceeeeccccccc---hhccccccc
Confidence            3455788999999999999999999887778999999999999998887654433 333333332211   123456899


Q ss_pred             EEEE
Q 009871          149 IVTM  152 (523)
Q Consensus       149 ~V~~  152 (523)
                      .|++
T Consensus       174 ~IL~  177 (284)
T d1sqga2         174 RILL  177 (284)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9999

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=97.55  E-value=3.5e-05  Score=69.10  Aligned_cols=50  Identities=24%  Similarity=0.302  Sum_probs=36.6

Q ss_pred             HHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhc--CCCEEEEEcCChHHHH
Q 009871          323 MAAVLARNPTIVAGKKVLELGCGCGGICSMVAAG--SADLVVATDGDSIALD  372 (523)
Q Consensus       323 la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~--~~~~V~~~D~~~~~l~  372 (523)
                      ++++|.......++.+|||.|||+|.+...+...  ....++++|+++.++.
T Consensus         7 i~~~m~~l~~~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~   58 (223)
T d2ih2a1           7 VVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALD   58 (223)
T ss_dssp             HHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCC
T ss_pred             HHHHHHHhcCCCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHh
Confidence            4555555445557889999999999877666554  3457999999986543

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.54  E-value=6.8e-05  Score=70.88  Aligned_cols=78  Identities=13%  Similarity=0.068  Sum_probs=61.7

Q ss_pred             hcCCCCCeEEEECCCccccHHHHHhhC-CCCEEEEEeCCHHHHHHHHhcccc-CCCcEEEEEeeccCCccCCCCCCCcee
Q 009871           71 FSGAGRKDVLEVGCGAGNTIFPLIAAY-PDVFVYACDFSPRAVNLVMTHKDF-TETRVSTFVCDLISDDLSRQISPSSID  148 (523)
Q Consensus        71 ~~~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~v~gvD~S~~~l~~a~~~~~~-~~~~v~~~~~d~~~~~~~~~~~~~~fD  148 (523)
                      +.+.++.+|||++||.|.=+..++... ..+.|+++|+++.-+...+++... ...++.....|....    +..+..||
T Consensus       112 l~~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~~~----~~~~~~fD  187 (313)
T d1ixka_         112 LDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHI----GELNVEFD  187 (313)
T ss_dssp             HCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGG----GGGCCCEE
T ss_pred             ccCCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhcccccccccccc----cccccccc
Confidence            455788999999999999999998873 467899999999999988876543 335677777776654    34467899


Q ss_pred             EEEE
Q 009871          149 IVTM  152 (523)
Q Consensus       149 ~V~~  152 (523)
                      .|++
T Consensus       188 ~ILv  191 (313)
T d1ixka_         188 KILL  191 (313)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9999

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=97.48  E-value=5e-05  Score=71.13  Aligned_cols=78  Identities=17%  Similarity=0.280  Sum_probs=63.3

Q ss_pred             cCCCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccc-----cCCCcEEEEEeeccCCccCCCCCCCc
Q 009871           72 SGAGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKD-----FTETRVSTFVCDLISDDLSRQISPSS  146 (523)
Q Consensus        72 ~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~-----~~~~~v~~~~~d~~~~~~~~~~~~~~  146 (523)
                      ..+.+++||-||-|.|..+..+++..+-.+|+.||+++.+++.|++...     ...++++++.+|.... +  .-..++
T Consensus       103 ~~~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~-l--~~~~~~  179 (312)
T d2b2ca1         103 AHPDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEF-L--KNHKNE  179 (312)
T ss_dssp             HSSSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHH-H--HHCTTC
T ss_pred             cCCCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHH-H--HhCCCC
Confidence            3467889999999999999999987665789999999999999999643     2347899999998752 1  113568


Q ss_pred             eeEEEE
Q 009871          147 IDIVTM  152 (523)
Q Consensus       147 fD~V~~  152 (523)
                      ||+|++
T Consensus       180 yDvII~  185 (312)
T d2b2ca1         180 FDVIIT  185 (312)
T ss_dssp             EEEEEE
T ss_pred             CCEEEE
Confidence            999999

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.46  E-value=0.00012  Score=63.22  Aligned_cols=127  Identities=13%  Similarity=0.188  Sum_probs=81.2

Q ss_pred             CCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhh-hhhc
Q 009871          332 TIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAI-KEEN  410 (523)
Q Consensus       332 ~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~-~~~~  410 (523)
                      ...+|..++|..+|.|+.+..++... .+|+++|.++++++.++..     .   ..++.+......+   +... ..+.
T Consensus        15 ~~~~g~~~vD~T~G~GGhs~~iL~~~-~~viaiD~D~~ai~~a~~~-----~---~~~~~~~~~~f~~---~~~~l~~~~   82 (182)
T d1wg8a2          15 AVRPGGVYVDATLGGAGHARGILERG-GRVIGLDQDPEAVARAKGL-----H---LPGLTVVQGNFRH---LKRHLAALG   82 (182)
T ss_dssp             TCCTTCEEEETTCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHT-----C---CTTEEEEESCGGG---HHHHHHHTT
T ss_pred             CCCCCCEEEEeCCCCcHHHHHHhccc-CcEEEEhhhhhHHHHHhhc-----c---ccceeEeehHHHH---HHHHHHHcC
Confidence            34588899999999999998888875 4899999999999888752     1   1355555544433   2222 2334


Q ss_pred             CCCccEEEEccccCCC----------CChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhHHHHHHHHcCCEE
Q 009871          411 NEGFEVILGTDVSYIP----------EAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRL  480 (523)
Q Consensus       411 ~~~fD~Ii~~d~~y~~----------~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~~~~~~~~gf~~  480 (523)
                      .+.+|.|+. |+-+..          +.....+.....+|         +++|.+.+...+ ......+...+++.+++.
T Consensus        83 ~~~vdgIl~-DLGvSs~qld~~~re~~~~~~~L~~~~~~l---------k~gg~~~ii~fh-s~Ed~ivk~~~~e~~~k~  151 (182)
T d1wg8a2          83 VERVDGILA-DLGVSSFHLDDPSDELNALKEFLEQAAEVL---------APGGRLVVIAFH-SLEDRVVKRFLRESGLKV  151 (182)
T ss_dssp             CSCEEEEEE-ECSCCHHHHHCGGTHHHHHHHHHHHHHHHE---------EEEEEEEEEECS-HHHHHHHHHHHHHHCSEE
T ss_pred             CCccCEEEE-EccCCHHHhhcchHHHHHHHHHHHHHHhhh---------CCCCeEEEEecc-cchhHHHHHHHhhcccee
Confidence            568999987 443321          12333555666667         557877665543 333334556667777765


Q ss_pred             E
Q 009871          481 V  481 (523)
Q Consensus       481 ~  481 (523)
                      .
T Consensus       152 i  152 (182)
T d1wg8a2         152 L  152 (182)
T ss_dssp             S
T ss_pred             c
Confidence            3

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.32  E-value=0.001  Score=62.43  Aligned_cols=142  Identities=18%  Similarity=0.112  Sum_probs=85.5

Q ss_pred             hHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhc--CCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeee
Q 009871          319 SAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAG--SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLE  396 (523)
Q Consensus       319 ~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~--~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ld  396 (523)
                      +|.+.+..|.    ..+|.+|||+.||.|+=+..++..  ....|++.|.++.-++.++.|+...+..    .+.+.   
T Consensus       104 aS~l~~~~l~----~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~----~i~~~---  172 (313)
T d1ixka_         104 SSMYPPVALD----PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVL----NVILF---  172 (313)
T ss_dssp             HHHHHHHHHC----CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCC----SEEEE---
T ss_pred             cccchhhccc----CCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhh----ccccc---
Confidence            3444455442    347889999999999877777765  3458999999999999999999987664    23222   


Q ss_pred             cCCCCcchhhhhhcCCCccEEEEcc------cc-------CC--CC-------ChHHHHHHHHHHhhccCCCCCCCCCcE
Q 009871          397 WGNRDHIEAIKEENNEGFEVILGTD------VS-------YI--PE-------AILPLFATAKELTASSNKSLREDQQPA  454 (523)
Q Consensus       397 w~~~~~~~~~~~~~~~~fD~Ii~~d------~~-------y~--~~-------~~~~l~~~l~~ll~~~~~~~~~~~~g~  454 (523)
                      +.+....    +.....||.|+.--      ++       +.  .+       .-..++.....++         +|||.
T Consensus       173 ~~d~~~~----~~~~~~fD~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l---------k~gG~  239 (313)
T d1ixka_         173 HSSSLHI----GELNVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVL---------KPGGI  239 (313)
T ss_dssp             SSCGGGG----GGGCCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHE---------EEEEE
T ss_pred             ccccccc----ccccccccEEEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhhee---------CCCcE
Confidence            1221111    22356899999521      11       11  11       2233444555555         56888


Q ss_pred             EEEEEeecC--CChhHHHHHHHHcCCEEEEEc
Q 009871          455 FILCHIFRQ--VDEPSMLSAATQCGFRLVDKW  484 (523)
Q Consensus       455 ~~l~~~~r~--~~~~~~~~~~~~~gf~~~~~~  484 (523)
                      ++.+...=.  ..+.-+...++++++++..+.
T Consensus       240 lVYsTCSl~~eENE~VV~~~L~~~~~~~~~~~  271 (313)
T d1ixka_         240 LVYSTCSLEPEENEFVIQWALDNFDVELLPLK  271 (313)
T ss_dssp             EEEEESCCCGGGTHHHHHHHHHHSSEEEECCC
T ss_pred             EEEeeccCChHhHHHHHHHHHhcCCCEEeecc
Confidence            776554422  223334455567888776553

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=97.20  E-value=0.00014  Score=66.13  Aligned_cols=51  Identities=16%  Similarity=0.174  Sum_probs=41.2

Q ss_pred             HHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHH
Q 009871          326 VLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQN  377 (523)
Q Consensus       326 ~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n  377 (523)
                      .+.+.....++..|||+|||+|.++..++..+ .+|+++|+|+.+++.++..
T Consensus        12 ~Iv~~~~~~~~d~vlEIGpG~G~LT~~Ll~~~-~~v~aiEiD~~l~~~L~~~   62 (252)
T d1qyra_          12 SIVSAINPQKGQAMVEIGPGLAALTEPVGERL-DQLTVIELDRDLAARLQTH   62 (252)
T ss_dssp             HHHHHHCCCTTCCEEEECCTTTTTHHHHHTTC-SCEEEECCCHHHHHHHHTC
T ss_pred             HHHHhcCCCCCCEEEEECCCchHHHHHHHccC-CceEEEEeccchhHHHHHH
Confidence            33333344578899999999999999998875 5799999999999988763

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.18  E-value=0.0004  Score=68.56  Aligned_cols=140  Identities=12%  Similarity=0.044  Sum_probs=84.6

Q ss_pred             HHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcC--------------CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCc
Q 009871          324 AAVLARNPTIVAGKKVLELGCGCGGICSMVAAGS--------------ADLVVATDGDSIALDLLAQNVTANLKPPFLAK  389 (523)
Q Consensus       324 a~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~--------------~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~  389 (523)
                      ++++........+.+|||-.||+|++...+....              ...+.+.|+++.+...++.|+..++.......
T Consensus       151 v~~mv~ll~~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~~~~~~  230 (425)
T d2okca1         151 IQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSP  230 (425)
T ss_dssp             HHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCS
T ss_pred             hHhhheeccCcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCccccce
Confidence            3344332233467899999999998876665431              12499999999999999999998876533222


Q ss_pred             eEEEeeecCCCCcchhhhhhcCCCccEEEEccccCCC-----------------CChHHHHHHHHHHhhccCCCCCCCCC
Q 009871          390 LITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIP-----------------EAILPLFATAKELTASSNKSLREDQQ  452 (523)
Q Consensus       390 v~~~~ldw~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~-----------------~~~~~l~~~l~~ll~~~~~~~~~~~~  452 (523)
                      +  ...|.-.        .....+||+||++...-..                 ..-..++..+..+|         +++
T Consensus       231 i--~~~d~l~--------~~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~L---------k~~  291 (425)
T d2okca1         231 I--VCEDSLE--------KEPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLML---------KTG  291 (425)
T ss_dssp             E--EECCTTT--------SCCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHE---------EEE
T ss_pred             e--ecCchhh--------hhcccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhc---------CCC
Confidence            2  2222211        1234689999998765210                 11234778888888         557


Q ss_pred             cEEEEEEeec---CCC-hhHHHHHHHHcCCEEEEE
Q 009871          453 PAFILCHIFR---QVD-EPSMLSAATQCGFRLVDK  483 (523)
Q Consensus       453 g~~~l~~~~r---~~~-~~~~~~~~~~~gf~~~~~  483 (523)
                      |.+.+..+..   +.. ...+.+.+.+. +.+..+
T Consensus       292 G~~~iI~p~~~L~~~~~~~~iR~~Ll~~-~~i~aI  325 (425)
T d2okca1         292 GRAAVVLPDNVLFEAGAGETIRKRLLQD-FNLHTI  325 (425)
T ss_dssp             EEEEEEEEHHHHHCSTHHHHHHHHHHHH-EEEEEE
T ss_pred             CeEEEEechHHhhhhhhHHHHHHHHHHh-cchhHh
Confidence            7665555432   122 23455555444 334444

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.08  E-value=0.00044  Score=64.19  Aligned_cols=87  Identities=22%  Similarity=0.133  Sum_probs=60.3

Q ss_pred             hHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcC-CCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeec
Q 009871          319 SAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGS-ADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEW  397 (523)
Q Consensus       319 ~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw  397 (523)
                      +|.+.+..|.    ..+|.+|||+.||.|+=+..+++.+ ...|++.|.++.-++.++.|+...+..    .+.+...+.
T Consensus        90 sS~l~~~~L~----~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~----~~~~~~~~~  161 (284)
T d1sqga2          90 SAQGCMTWLA----PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMK----ATVKQGDGR  161 (284)
T ss_dssp             HHHTHHHHHC----CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCC----CEEEECCTT
T ss_pred             cccccccccC----ccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhccccc----ceeeecccc
Confidence            4455555552    2478899999999999888888764 358999999999999999999987764    222222111


Q ss_pred             CCCCcchhhhhhcCCCccEEEE
Q 009871          398 GNRDHIEAIKEENNEGFEVILG  419 (523)
Q Consensus       398 ~~~~~~~~~~~~~~~~fD~Ii~  419 (523)
                         ...   .......||.|+.
T Consensus       162 ---~~~---~~~~~~~fd~IL~  177 (284)
T d1sqga2         162 ---YPS---QWCGEQQFDRILL  177 (284)
T ss_dssp             ---CTH---HHHTTCCEEEEEE
T ss_pred             ---ccc---hhcccccccEEEE
Confidence               111   1223568999994

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.02  E-value=0.0011  Score=61.71  Aligned_cols=82  Identities=12%  Similarity=0.095  Sum_probs=63.6

Q ss_pred             hhcCCCCCeEEEECCCccccHHHHHhh-CCCCEEEEEeCCHHHHHHHHhccccC-CCcEEEEEeeccCCccCCCCCCCce
Q 009871           70 YFSGAGRKDVLEVGCGAGNTIFPLIAA-YPDVFVYACDFSPRAVNLVMTHKDFT-ETRVSTFVCDLISDDLSRQISPSSI  147 (523)
Q Consensus        70 ~~~~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~v~gvD~S~~~l~~a~~~~~~~-~~~v~~~~~d~~~~~~~~~~~~~~f  147 (523)
                      ++.+.++.+|||++||.|.-+.+++.. .....|+++|+++.-++.++++.... ..++.+...|...++... -..+.|
T Consensus        89 ~L~~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~~~~~~~~d~~~~~~~~-~~~~~f  167 (293)
T d2b9ea1          89 LLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSD-PRYHEV  167 (293)
T ss_dssp             HHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTC-GGGTTE
T ss_pred             ccCCCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCccceeeeehhhhhhcccc-ccccee
Confidence            345578899999999999999998876 45678999999999999998876443 467888888887653211 113579


Q ss_pred             eEEEE
Q 009871          148 DIVTM  152 (523)
Q Consensus       148 D~V~~  152 (523)
                      |.|++
T Consensus       168 D~VL~  172 (293)
T d2b9ea1         168 HYILL  172 (293)
T ss_dssp             EEEEE
T ss_pred             eEEee
Confidence            99988

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=96.95  E-value=0.0013  Score=56.32  Aligned_cols=69  Identities=16%  Similarity=0.198  Sum_probs=52.0

Q ss_pred             CCCCeEEEECCCccccHHHHHhh-CCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCcc----CCCCCCCcee
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAA-YPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDL----SRQISPSSID  148 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~-~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~----~~~~~~~~fD  148 (523)
                      .++.+|||+||++|..+..+.++ .+...|+|+|+.+-          ....++.++++|+.+...    ......+.||
T Consensus        21 k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~----------~~i~~~~~~~~d~~~~~~~~~~~~~~~~~~~D   90 (180)
T d1ej0a_          21 KPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM----------DPIVGVDFLQGDFRDELVMKALLERVGDSKVQ   90 (180)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC----------CCCTTEEEEESCTTSHHHHHHHHHHHTTCCEE
T ss_pred             CCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc----------cccCCceEeecccccchhhhhhhhhccCccee
Confidence            57889999999999999988876 55678999998762          123678999999975321    0112356899


Q ss_pred             EEEE
Q 009871          149 IVTM  152 (523)
Q Consensus       149 ~V~~  152 (523)
                      +|+|
T Consensus        91 lVlS   94 (180)
T d1ej0a_          91 VVMS   94 (180)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            9999

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=96.89  E-value=0.002  Score=57.25  Aligned_cols=53  Identities=21%  Similarity=0.273  Sum_probs=40.0

Q ss_pred             ccccchhHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcC-CCEEEEEcC
Q 009871          313 GLMLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGS-ADLVVATDG  366 (523)
Q Consensus       313 G~~~W~~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~-~~~V~~~D~  366 (523)
                      |..+=-++.-|.+..... .+.++.+|+|||||.|+.+-.++.+. ...|.++|+
T Consensus        45 ~~~~SR~~~Kl~~~~~~~-~~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~i   98 (257)
T d2p41a1          45 HHAVSRGSAKLRWFVERN-LVTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTK   98 (257)
T ss_dssp             SCCSSTHHHHHHHHHHTT-SSCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECC
T ss_pred             CCCcchHHHHHHHHHHhc-CccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEe
Confidence            444556788887766665 55677799999999999988888774 347888887

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=96.84  E-value=0.00026  Score=63.47  Aligned_cols=75  Identities=9%  Similarity=0.035  Sum_probs=53.1

Q ss_pred             CCCCeEEEECCCccccHHHHHhh----CCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeE
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAA----YPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDI  149 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~----~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~  149 (523)
                      .++++|||||++.|..+..++..    .++++|+|+|+.+.....+.    ....+++++++|..+......+....+|.
T Consensus        79 ~KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~----~~~~~I~~i~gDs~~~~~~~~l~~~~~dl  154 (232)
T d2bm8a1          79 LRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA----SDMENITLHQGDCSDLTTFEHLREMAHPL  154 (232)
T ss_dssp             HCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG----GGCTTEEEEECCSSCSGGGGGGSSSCSSE
T ss_pred             hCCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhh----ccccceeeeecccccHHHHHHHHhcCCCE
Confidence            45789999999999887766543    46789999999876433222    23478999999987654333344556888


Q ss_pred             EEE
Q 009871          150 VTM  152 (523)
Q Consensus       150 V~~  152 (523)
                      |+.
T Consensus       155 IfI  157 (232)
T d2bm8a1         155 IFI  157 (232)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            876

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=96.75  E-value=0.00085  Score=67.98  Aligned_cols=123  Identities=10%  Similarity=-0.080  Sum_probs=74.0

Q ss_pred             HHHhcCCCCCCCCeEEEECCCccHHHHHHHhc----C---------------CCEEEEEcCChHHHHHHHHHHHhcCCCC
Q 009871          325 AVLARNPTIVAGKKVLELGCGCGGICSMVAAG----S---------------ADLVVATDGDSIALDLLAQNVTANLKPP  385 (523)
Q Consensus       325 ~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~----~---------------~~~V~~~D~~~~~l~~~~~n~~~n~~~~  385 (523)
                      ++|.......++.+|+|-.||+|++...+...    .               ...+++.|+++.+...++.|+...+...
T Consensus       154 ~~mv~ll~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~~~~~  233 (524)
T d2ar0a1         154 KTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEG  233 (524)
T ss_dssp             HHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCC
T ss_pred             HhhhhcccCccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhhcccc
Confidence            33333323346779999999999877655432    1               1258999999999999999998876542


Q ss_pred             CCCceEEEeeecCCCCcchhhhhhcCCCccEEEEccccCCCC--------------ChHHHHHHHHHHhhccCCCCCCCC
Q 009871          386 FLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPE--------------AILPLFATAKELTASSNKSLREDQ  451 (523)
Q Consensus       386 ~~~~v~~~~ldw~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~--------------~~~~l~~~l~~ll~~~~~~~~~~~  451 (523)
                      ....  ...+.+++....   ......+||+|+++...-...              .--.++..+.+.|         ++
T Consensus       234 ~i~~--~~~~~~~~~l~~---d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~L---------k~  299 (524)
T d2ar0a1         234 NLDH--GGAIRLGNTLGS---DGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETL---------HP  299 (524)
T ss_dssp             BGGG--TBSEEESCTTSH---HHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHE---------EE
T ss_pred             cccc--cchhhhhhhhhh---cccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhc---------cc
Confidence            1100  001111211100   012346899999987653211              1234778888888         55


Q ss_pred             CcEEEEEEee
Q 009871          452 QPAFILCHIF  461 (523)
Q Consensus       452 ~g~~~l~~~~  461 (523)
                      +|++.+..+.
T Consensus       300 gGr~aiIlP~  309 (524)
T d2ar0a1         300 GGRAAVVVPD  309 (524)
T ss_dssp             EEEEEEEEEH
T ss_pred             cCcEEEEEeh
Confidence            7876655543

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.69  E-value=0.0036  Score=58.00  Aligned_cols=78  Identities=17%  Similarity=0.053  Sum_probs=56.6

Q ss_pred             CCCCeEEEECCCccHHHHHHHhc--CCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcC
Q 009871          334 VAGKKVLELGCGCGGICSMVAAG--SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENN  411 (523)
Q Consensus       334 ~~~~~VLElG~G~G~l~~~~a~~--~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~  411 (523)
                      .+|.+|||++||.|+=+..+|+.  ....|+++|+++.-++.+++|+...+..    .+.+...|........    ...
T Consensus        93 ~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~----~~~~~~~d~~~~~~~~----~~~  164 (293)
T d2b9ea1          93 PPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVS----CCELAEEDFLAVSPSD----PRY  164 (293)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCC----SEEEEECCGGGSCTTC----GGG
T ss_pred             CccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCcc----ceeeeehhhhhhcccc----ccc
Confidence            47889999999999878877765  4568999999999999999999998764    4555444433221110    012


Q ss_pred             CCccEEEE
Q 009871          412 EGFEVILG  419 (523)
Q Consensus       412 ~~fD~Ii~  419 (523)
                      +.||.|+.
T Consensus       165 ~~fD~VL~  172 (293)
T d2b9ea1         165 HEVHYILL  172 (293)
T ss_dssp             TTEEEEEE
T ss_pred             ceeeEEee
Confidence            57999995

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=96.63  E-value=0.0023  Score=57.08  Aligned_cols=121  Identities=14%  Similarity=0.165  Sum_probs=67.8

Q ss_pred             ccccchhH--HH-HHHHHhcCCCCCCCCeEEEECCCccHHHHHHHh----c-CCCEEEEEcCChHHHHHHHHHHHhcCCC
Q 009871          313 GLMLWESA--HL-MAAVLARNPTIVAGKKVLELGCGCGGICSMVAA----G-SADLVVATDGDSIALDLLAQNVTANLKP  384 (523)
Q Consensus       313 G~~~W~~a--~~-la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~----~-~~~~V~~~D~~~~~l~~~~~n~~~n~~~  384 (523)
                      |.++|..-  +. +.+.+.+    .+.++|||+|++.|+-+.+++.    . ...+|+++|+++.......         
T Consensus        59 G~p~~k~p~d~~~~~eli~~----~KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~---------  125 (232)
T d2bm8a1          59 GLRMLKDPDTQAVYHDMLWE----LRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA---------  125 (232)
T ss_dssp             TEECCSCHHHHHHHHHHHHH----HCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG---------
T ss_pred             ceecccCHHHHHHHHHHHHH----hCCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhh---------
Confidence            66777332  33 2333332    2457999999999965444442    2 2458999999874322111         


Q ss_pred             CCCCceEEEeeecCCCCcchhhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEe
Q 009871          385 PFLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHI  460 (523)
Q Consensus       385 ~~~~~v~~~~ldw~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~  460 (523)
                      ....++++...|-.+.+.++   .+....+|+|+.-+. +..+....-+ .+..+|         ++||.+++-..
T Consensus       126 ~~~~~I~~i~gDs~~~~~~~---~l~~~~~dlIfID~~-H~~~~v~~~~-~~~~lL---------k~GG~iIveD~  187 (232)
T d2bm8a1         126 SDMENITLHQGDCSDLTTFE---HLREMAHPLIFIDNA-HANTFNIMKW-AVDHLL---------EEGDYFIIEDM  187 (232)
T ss_dssp             GGCTTEEEEECCSSCSGGGG---GGSSSCSSEEEEESS-CSSHHHHHHH-HHHHTC---------CTTCEEEECSC
T ss_pred             ccccceeeeecccccHHHHH---HHHhcCCCEEEEcCC-cchHHHHHHH-HHhccc---------CcCCEEEEEcC
Confidence            11256777766655443333   333446888776433 3322222222 245677         67999888654

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=96.50  E-value=0.0019  Score=63.44  Aligned_cols=93  Identities=15%  Similarity=0.217  Sum_probs=64.5

Q ss_pred             cccccchhhhHHHHhhhhcCCCCCeEEEECCCccccHHHHHhhCC-------------CCEEEEEeCCHHHHHHHHhccc
Q 009871           54 DRFFKDRHYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAYP-------------DVFVYACDFSPRAVNLVMTHKD  120 (523)
Q Consensus        54 ~~f~~~~~~l~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~-------------~~~v~gvD~S~~~l~~a~~~~~  120 (523)
                      +.|+=+ +.+.+...+++.+..+.+|+|-+||+|.++..+.++..             ...+.|+|+++.+...|+-+..
T Consensus       142 G~f~TP-~~Iv~~mv~ll~~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~  220 (425)
T d2okca1         142 GQYFTP-RPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLY  220 (425)
T ss_dssp             GGGCCC-HHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHH
T ss_pred             hhhccc-hhhhHhhheeccCcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhh
Confidence            345433 33445555666667789999999999999988766521             1249999999999999987653


Q ss_pred             cC---CCcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871          121 FT---ETRVSTFVCDLISDDLSRQISPSSIDIVTM  152 (523)
Q Consensus       121 ~~---~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~  152 (523)
                      ..   .........|....     .+..+||+|++
T Consensus       221 l~g~~~~~~~i~~~d~l~~-----~~~~~fD~Ii~  250 (425)
T d2okca1         221 LHGIGTDRSPIVCEDSLEK-----EPSTLVDVILA  250 (425)
T ss_dssp             HTTCCSSCCSEEECCTTTS-----CCSSCEEEEEE
T ss_pred             hcCCccccceeecCchhhh-----hcccccceEEe
Confidence            21   23445666776543     34678999999

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.34  E-value=0.0019  Score=61.97  Aligned_cols=75  Identities=15%  Similarity=0.030  Sum_probs=55.2

Q ss_pred             CCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCC----------------CcEEEEEeeccCCcc
Q 009871           75 GRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTE----------------TRVSTFVCDLISDDL  138 (523)
Q Consensus        75 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~----------------~~v~~~~~d~~~~~~  138 (523)
                      .+.+|||..||+|..+..++...+...|++.|+|+.+++.++++.+.+.                ..+...+.|+...- 
T Consensus        45 ~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~-  123 (375)
T d2dula1          45 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLM-  123 (375)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHH-
T ss_pred             CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhh-
Confidence            5789999999999999988777656689999999999999999864321                23455566654220 


Q ss_pred             CCCCCCCceeEEEE
Q 009871          139 SRQISPSSIDIVTM  152 (523)
Q Consensus       139 ~~~~~~~~fD~V~~  152 (523)
                        .-....||+|..
T Consensus       124 --~~~~~~fDvIDi  135 (375)
T d2dula1         124 --AERHRYFHFIDL  135 (375)
T ss_dssp             --HHSTTCEEEEEE
T ss_pred             --HhhcCcCCcccC
Confidence              012457999977

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=96.27  E-value=0.0067  Score=51.42  Aligned_cols=104  Identities=13%  Similarity=0.124  Sum_probs=64.2

Q ss_pred             CCCCCCCeEEEECCCc-cHHHHHHHhc-CCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhh
Q 009871          331 PTIVAGKKVLELGCGC-GGICSMVAAG-SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKE  408 (523)
Q Consensus       331 ~~~~~~~~VLElG~G~-G~l~~~~a~~-~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~  408 (523)
                      ....+|.+||=+|||. |.++..+++. |+.+|+++|.+++-++.+++-    +..        ..++..+.+..+.+..
T Consensus        23 a~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~l----Ga~--------~~i~~~~~~~~~~v~~   90 (174)
T d1jqba2          23 ADIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFY----GAT--------DILNYKNGHIEDQVMK   90 (174)
T ss_dssp             TTCCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHH----TCS--------EEECGGGSCHHHHHHH
T ss_pred             hCCCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhh----Ccc--------ccccccchhHHHHHHH
Confidence            3556889999999985 4444445554 566899999999888887641    111        1123333333333434


Q ss_pred             hc-CCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee
Q 009871          409 EN-NEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIF  461 (523)
Q Consensus       409 ~~-~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~  461 (523)
                      .. ...+|+||-+      ...+..++..-+++         +|+|.+++....
T Consensus        91 ~t~g~G~D~vid~------~g~~~~~~~a~~~~---------~~~G~iv~~G~~  129 (174)
T d1jqba2          91 LTNGKGVDRVIMA------GGGSETLSQAVKMV---------KPGGIISNINYH  129 (174)
T ss_dssp             HTTTSCEEEEEEC------SSCTTHHHHHHHHE---------EEEEEEEECCCC
T ss_pred             HhhccCcceEEEc------cCCHHHHHHHHHHH---------hcCCEEEEEeec
Confidence            33 3469998854      22345567777788         568888776543

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=96.00  E-value=0.0054  Score=51.69  Aligned_cols=104  Identities=17%  Similarity=0.181  Sum_probs=63.5

Q ss_pred             CCCCCCeEEEECCCc-cHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCC-c----chh
Q 009871          332 TIVAGKKVLELGCGC-GGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRD-H----IEA  405 (523)
Q Consensus       332 ~~~~~~~VLElG~G~-G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~-~----~~~  405 (523)
                      ...+|.+||=+|||. |.++..+++..+.+|+++|.+++-++.+++-    +.     ...   ..+.... .    ...
T Consensus        23 ~~~~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~~----ga-----~~~---~~~~~~~~~~~~~~~~   90 (170)
T d1e3ja2          23 GVQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNC----GA-----DVT---LVVDPAKEEESSIIER   90 (170)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT----TC-----SEE---EECCTTTSCHHHHHHH
T ss_pred             CCCCCCEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHHHc----CC-----cEE---Eeccccccccchhhhh
Confidence            346888999999984 4334444554456899999999888888752    11     111   1111111 1    112


Q ss_pred             hhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec
Q 009871          406 IKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFR  462 (523)
Q Consensus       406 ~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r  462 (523)
                      +.......+|+|+-+      ..-+..+....+++         +++|.+++.....
T Consensus        91 ~~~~~g~g~D~vid~------~g~~~~~~~a~~~~---------~~~G~iv~~G~~~  132 (170)
T d1e3ja2          91 IRSAIGDLPNVTIDC------SGNEKCITIGINIT---------RTGGTLMLVGMGS  132 (170)
T ss_dssp             HHHHSSSCCSEEEEC------SCCHHHHHHHHHHS---------CTTCEEEECSCCS
T ss_pred             hhcccccCCceeeec------CCChHHHHHHHHHH---------hcCCceEEEecCC
Confidence            223335678998864      33456677777888         6789888776543

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.99  E-value=0.004  Score=58.51  Aligned_cols=59  Identities=10%  Similarity=0.017  Sum_probs=49.3

Q ss_pred             CCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccC
Q 009871           75 GRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLIS  135 (523)
Q Consensus        75 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~  135 (523)
                      .+..|||||.|.|.++..|+......+|+++|+++..++..++...  ..+++++.+|+..
T Consensus        43 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~--~~~~~ii~~D~l~  101 (322)
T d1i4wa_          43 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFE--GSPLQILKRDPYD  101 (322)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTT--TSSCEEECSCTTC
T ss_pred             CCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhcc--CCCcEEEeCchhh
Confidence            5678999999999999999987433479999999999999887643  3678999999864

>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HhaI
species: Haemophilus haemolyticus [TaxId: 726]

Probab=95.96  E-value=0.033  Score=51.94  Aligned_cols=125  Identities=11%  Similarity=0.139  Sum_probs=75.0

Q ss_pred             CCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCc
Q 009871          335 AGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGF  414 (523)
Q Consensus       335 ~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~f  414 (523)
                      .+.+||||-||.|++...+-..|...|.++|+++.+++..+.|.... .          ..|..+.      ....-..+
T Consensus        10 ~~lrv~~lFsG~Gg~~~gl~~aG~~~v~a~e~d~~a~~~~~~N~~~~-~----------~~Di~~~------~~~~~~~~   72 (327)
T d2c7pa1          10 TGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGEK-P----------EGDITQV------NEKTIPDH   72 (327)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSCC-C----------BSCGGGS------CGGGSCCC
T ss_pred             CCCeEEEECccccHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHCCCC-C----------cCchhcC------chhhccee
Confidence            66799999999998888777778777888999999999999886321 0          1122211      11112479


Q ss_pred             cEEEEccccCCC----------CChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCC------hhHHHHHHHHcCC
Q 009871          415 EVILGTDVSYIP----------EAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVD------EPSMLSAATQCGF  478 (523)
Q Consensus       415 D~Ii~~d~~y~~----------~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~------~~~~~~~~~~~gf  478 (523)
                      |+|+++...-..          .....|+..+.++++..      +|. .+++-....-..      ...++..+++.|+
T Consensus        73 Dll~ggpPCq~fS~ag~~~g~~d~r~~l~~~~~~~i~~~------kP~-~~~lENV~~~~~~~~~~~~~~i~~~l~~lGY  145 (327)
T d2c7pa1          73 DILCAGFPCQAFSISGKQKGFEDSRGTLFFDIARIVREK------KPK-VVFMENVKNFASHDNGNTLEVVKNTMNELDY  145 (327)
T ss_dssp             SEEEEECCCTTTCTTSCCCGGGSTTSCHHHHHHHHHHHH------CCS-EEEEEEEGGGGTGGGGHHHHHHHHHHHHTTB
T ss_pred             eeeecccccchhhhhhhhcCCcccchhHHHHHHHHHhcc------CCc-EEecccchhhhhhccchhhHHhhhHHHhcCC
Confidence            999988654321          11223555555555221      232 444433332111      2455677888888


Q ss_pred             EEEEE
Q 009871          479 RLVDK  483 (523)
Q Consensus       479 ~~~~~  483 (523)
                      .+...
T Consensus       146 ~~~~~  150 (327)
T d2c7pa1         146 SFHAK  150 (327)
T ss_dssp             CCEEE
T ss_pred             cceee
Confidence            77654

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=95.82  E-value=0.0032  Score=56.43  Aligned_cols=96  Identities=13%  Similarity=0.115  Sum_probs=62.2

Q ss_pred             CeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCC-----CCceEEEeeecCCCCcchhhhhhcC
Q 009871          337 KKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPF-----LAKLITKRLEWGNRDHIEAIKEENN  411 (523)
Q Consensus       337 ~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~-----~~~v~~~~ldw~~~~~~~~~~~~~~  411 (523)
                      .+|||+=||.|.-+..+|+.|+ +|++++.+|.+..+++.++........     ..++++...   +  ..+-+... .
T Consensus        90 ~~VlD~TaGlG~Da~vlA~~G~-~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~---D--s~~~L~~~-~  162 (250)
T d2oyra1          90 PDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHA---S--SLTALTDI-T  162 (250)
T ss_dssp             CCEEETTCTTCHHHHHHHHHTC-CEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEES---C--HHHHSTTC-S
T ss_pred             CEEEECCCcccHHHHHHHhCCC-EEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecC---c--HHHHHhcc-C
Confidence            4899999999999999998875 699999999888888877654332111     124454432   2  12212222 4


Q ss_pred             CCccEEEEccccCCCCCh----HHHHHHHHHHh
Q 009871          412 EGFEVILGTDVSYIPEAI----LPLFATAKELT  440 (523)
Q Consensus       412 ~~fD~Ii~~d~~y~~~~~----~~l~~~l~~ll  440 (523)
                      .+||+|.. |..|....-    ..-++.++.++
T Consensus       163 ~~~DvIYl-DPMFp~~~Ksa~~kk~m~~l~~l~  194 (250)
T d2oyra1         163 PRPQVVYL-DPMFPHKQKSALVKKEMRVFQSLV  194 (250)
T ss_dssp             SCCSEEEE-CCCCCCCCC-----HHHHHHHHHS
T ss_pred             CCCCEEEE-CCCCccccccccchhHHHHHHhhc
Confidence            57999998 888864433    33455555555

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=95.72  E-value=0.027  Score=47.38  Aligned_cols=107  Identities=16%  Similarity=0.179  Sum_probs=69.4

Q ss_pred             hcCCCCCCCCeEEEECCCccHHH-HHHHh-cCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchh
Q 009871          328 ARNPTIVAGKKVLELGCGCGGIC-SMVAA-GSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEA  405 (523)
Q Consensus       328 ~~~~~~~~~~~VLElG~G~G~l~-~~~a~-~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~  405 (523)
                      .......+|.+||=+|||.-++. ..+++ .++..|+++|.++.-++.+++-    +..      .+  ++-.+.+..+.
T Consensus        21 ~~~~~~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~----Ga~------~~--i~~~~~~~~~~   88 (174)
T d1f8fa2          21 INALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQL----GAT------HV--INSKTQDPVAA   88 (174)
T ss_dssp             HTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHH----TCS------EE--EETTTSCHHHH
T ss_pred             HHhhCCCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHc----CCe------EE--EeCCCcCHHHH
Confidence            34445678999999999753322 23333 3778899999999888887652    211      12  23333344455


Q ss_pred             hhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee
Q 009871          406 IKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIF  461 (523)
Q Consensus       406 ~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~  461 (523)
                      +..+.++.||+|+-+      ......++...+++         +++|.+++....
T Consensus        89 i~~~t~gg~D~vid~------~G~~~~~~~~~~~~---------~~~G~i~~~G~~  129 (174)
T d1f8fa2          89 IKEITDGGVNFALES------TGSPEILKQGVDAL---------GILGKIAVVGAP  129 (174)
T ss_dssp             HHHHTTSCEEEEEEC------SCCHHHHHHHHHTE---------EEEEEEEECCCC
T ss_pred             HHHHcCCCCcEEEEc------CCcHHHHHHHHhcc---------cCceEEEEEeec
Confidence            555656789998865      34566778888888         568888876543

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=95.59  E-value=0.026  Score=48.60  Aligned_cols=109  Identities=15%  Similarity=0.060  Sum_probs=65.9

Q ss_pred             CCCCCCCeEEEECCCccH-HHHHHHh-cCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhh
Q 009871          331 PTIVAGKKVLELGCGCGG-ICSMVAA-GSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKE  408 (523)
Q Consensus       331 ~~~~~~~~VLElG~G~G~-l~~~~a~-~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~  408 (523)
                      ....+|.+||-+|||..+ ++..+++ .++.+|+++|.++.-++.+++.    +..      .+  .+-.+.+....+..
T Consensus        21 a~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~----Ga~------~~--~~~~~~~~~~~i~~   88 (195)
T d1kola2          21 AGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQ----GFE------IA--DLSLDTPLHEQIAA   88 (195)
T ss_dssp             TTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT----TCE------EE--ETTSSSCHHHHHHH
T ss_pred             hCCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhc----ccc------EE--EeCCCcCHHHHHHH
Confidence            456689999999998733 3344443 4777999999999988888753    111      11  11111111222222


Q ss_pred             h-cCCCccEEEEc---cc------cCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEe
Q 009871          409 E-NNEGFEVILGT---DV------SYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHI  460 (523)
Q Consensus       409 ~-~~~~fD~Ii~~---d~------~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~  460 (523)
                      + ....+|+++-+   +.      ..........++...+++         +|+|.+.+...
T Consensus        89 ~t~g~g~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~---------r~gG~v~~~G~  141 (195)
T d1kola2          89 LLGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVT---------RVAGKIGIPGL  141 (195)
T ss_dssp             HHSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHE---------EEEEEEEECSC
T ss_pred             HhCCCCcEEEEECccccccCCcccceeecCcHHHHHHHHHHH---------hcCCEEEEeee
Confidence            2 34579999843   11      111223456788888888         56898887654

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=95.46  E-value=0.0049  Score=55.19  Aligned_cols=73  Identities=16%  Similarity=0.167  Sum_probs=54.1

Q ss_pred             CCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhcc---ccC-------CCcEEEEEeeccCCccCCCCCC
Q 009871           75 GRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHK---DFT-------ETRVSTFVCDLISDDLSRQISP  144 (523)
Q Consensus        75 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~---~~~-------~~~v~~~~~d~~~~~~~~~~~~  144 (523)
                      ...+|||.=||.|..+..++..  +++|+++|-+|.+....+...   ...       ..+++++++|..+. +  .-..
T Consensus        88 ~~~~VlD~TaGlG~Da~vlA~~--G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~-L--~~~~  162 (250)
T d2oyra1          88 YLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTA-L--TDIT  162 (250)
T ss_dssp             BCCCEEETTCTTCHHHHHHHHH--TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHH-S--TTCS
T ss_pred             CCCEEEECCCcccHHHHHHHhC--CCEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHH-H--hccC
Confidence            3458999999999999999988  567999999998766655422   111       24789999997642 1  1124


Q ss_pred             CceeEEEE
Q 009871          145 SSIDIVTM  152 (523)
Q Consensus       145 ~~fD~V~~  152 (523)
                      ++||+|+.
T Consensus       163 ~~~DvIYl  170 (250)
T d2oyra1         163 PRPQVVYL  170 (250)
T ss_dssp             SCCSEEEE
T ss_pred             CCCCEEEE
Confidence            57999988

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=95.31  E-value=0.039  Score=46.73  Aligned_cols=105  Identities=21%  Similarity=0.235  Sum_probs=62.4

Q ss_pred             cCCCCCCCCeEEEECCCc-cHHHHHHHhc-CCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCc---c
Q 009871          329 RNPTIVAGKKVLELGCGC-GGICSMVAAG-SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDH---I  403 (523)
Q Consensus       329 ~~~~~~~~~~VLElG~G~-G~l~~~~a~~-~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~---~  403 (523)
                      +.....+|.+||=+|||. |.+...+|+. |+.+|+++|.+++-++.+++.    +..      .  .++-.+.+.   .
T Consensus        22 ~~~~~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~l----Ga~------~--vi~~~~~~~~~~~   89 (182)
T d1vj0a2          22 EYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEI----GAD------L--TLNRRETSVEERR   89 (182)
T ss_dssp             TCSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHT----TCS------E--EEETTTSCHHHHH
T ss_pred             HHhCCCCCCEEEEECCCccchhheecccccccccccccccccccccccccc----cce------E--EEeccccchHHHH
Confidence            445566899999999973 3334444444 666899999999988888652    211      1  112222211   1


Q ss_pred             hhhhhhc-CCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEe
Q 009871          404 EAIKEEN-NEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHI  460 (523)
Q Consensus       404 ~~~~~~~-~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~  460 (523)
                      +.+.++. ...+|+|+-+  .-    .+..++...+++         +++|.+++...
T Consensus        90 ~~i~~~~~~~g~Dvvid~--vG----~~~~~~~a~~~l---------~~~G~iv~~G~  132 (182)
T d1vj0a2          90 KAIMDITHGRGADFILEA--TG----DSRALLEGSELL---------RRGGFYSVAGV  132 (182)
T ss_dssp             HHHHHHTTTSCEEEEEEC--SS----CTTHHHHHHHHE---------EEEEEEEECCC
T ss_pred             HHHHHhhCCCCceEEeec--CC----chhHHHHHHHHh---------cCCCEEEEEee
Confidence            1122222 3469998844  22    234567777888         56888877643

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=95.24  E-value=0.075  Score=44.58  Aligned_cols=106  Identities=15%  Similarity=0.110  Sum_probs=64.9

Q ss_pred             cCCCCCCCCeEEEECCCc-cHHHHHHHhc-CCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCC-cchh
Q 009871          329 RNPTIVAGKKVLELGCGC-GGICSMVAAG-SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRD-HIEA  405 (523)
Q Consensus       329 ~~~~~~~~~~VLElG~G~-G~l~~~~a~~-~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~-~~~~  405 (523)
                      ......+|.+||=+|||. |.++..+++. |+..|+++|.+++-++.+++-    +..      .+  .+....+ ....
T Consensus        22 ~~a~v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~----Ga~------~~--i~~~~~~~~~~~   89 (174)
T d1e3ia2          22 NTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKAL----GAT------DC--LNPRELDKPVQD   89 (174)
T ss_dssp             TTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT----TCS------EE--ECGGGCSSCHHH
T ss_pred             HhhCCCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHh----CCC------cc--cCCccchhhhhh
Confidence            344567899999999986 4334444443 677999999999877777652    211      11  1222111 1111


Q ss_pred             -hhhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCC-cEEEEEEee
Q 009871          406 -IKEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQ-PAFILCHIF  461 (523)
Q Consensus       406 -~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~-g~~~l~~~~  461 (523)
                       ........+|+++-+      ...+..+....+.+         +++ |.+++....
T Consensus        90 ~~~~~~~~G~d~vie~------~G~~~~~~~a~~~~---------~~g~G~~v~vG~~  132 (174)
T d1e3ia2          90 VITELTAGGVDYSLDC------AGTAQTLKAAVDCT---------VLGWGSCTVVGAK  132 (174)
T ss_dssp             HHHHHHTSCBSEEEES------SCCHHHHHHHHHTB---------CTTTCEEEECCCS
T ss_pred             hHhhhhcCCCcEEEEe------cccchHHHHHHHHh---------hcCCeEEEecCCC
Confidence             122345688988755      45666777777787         454 888776554

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.15  E-value=0.017  Score=54.11  Aligned_cols=44  Identities=18%  Similarity=0.120  Sum_probs=38.3

Q ss_pred             CCCeEEEECCCccHHHHHHHhc-CCCEEEEEcCChHHHHHHHHHH
Q 009871          335 AGKKVLELGCGCGGICSMVAAG-SADLVVATDGDSIALDLLAQNV  378 (523)
Q Consensus       335 ~~~~VLElG~G~G~l~~~~a~~-~~~~V~~~D~~~~~l~~~~~n~  378 (523)
                      .+.+|||+|.|.|.++..++.. .+.+|+++|.++..++.++...
T Consensus        43 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~   87 (322)
T d1i4wa_          43 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKF   87 (322)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHT
T ss_pred             CCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhc
Confidence            5678999999999999888876 5679999999999999887654

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.97  E-value=0.075  Score=44.29  Aligned_cols=125  Identities=18%  Similarity=0.143  Sum_probs=72.3

Q ss_pred             CCCCCCeEEEECCCccHHHHH-HHh-cCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCc---chhh
Q 009871          332 TIVAGKKVLELGCGCGGICSM-VAA-GSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDH---IEAI  406 (523)
Q Consensus       332 ~~~~~~~VLElG~G~G~l~~~-~a~-~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~---~~~~  406 (523)
                      ...+|.+||=+|||..++... +++ .|+.+|+++|.++.-++.+++.    +..      .+.  ...+.+.   ...+
T Consensus        23 ~~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~----Ga~------~~~--~~~~~~~~~~~~~~   90 (171)
T d1pl8a2          23 GVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEI----GAD------LVL--QISKESPQEIARKV   90 (171)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT----TCS------EEE--ECSSCCHHHHHHHH
T ss_pred             CCCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHh----CCc------ccc--cccccccccccccc
Confidence            345788999999986544333 333 3677999999999888887642    221      111  1111111   1111


Q ss_pred             hhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhHHHHHHHHcCCEEEEEc
Q 009871          407 KEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGFRLVDKW  484 (523)
Q Consensus       407 ~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~~~~~~~~gf~~~~~~  484 (523)
                      .......+|+|+-+      ...+..++...+++         +++|++++.........-.+...+ ..++++.-.+
T Consensus        91 ~~~~g~g~Dvvid~------~G~~~~~~~a~~~~---------~~gG~iv~~G~~~~~~~~~~~~~~-~k~l~i~Gs~  152 (171)
T d1pl8a2          91 EGQLGCKPEVTIEC------TGAEASIQAGIYAT---------RSGGTLVLVGLGSEMTTVPLLHAA-IREVDIKGVF  152 (171)
T ss_dssp             HHHHTSCCSEEEEC------SCCHHHHHHHHHHS---------CTTCEEEECSCCCSCCCCCHHHHH-HTTCEEEECC
T ss_pred             cccCCCCceEEEec------cCCchhHHHHHHHh---------cCCCEEEEEecCCCCCccCHHHHH-HCCcEEEEEe
Confidence            12234578998865      34566788888888         668888877654332221233332 3456665444

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=94.94  E-value=0.0066  Score=61.17  Aligned_cols=95  Identities=13%  Similarity=0.114  Sum_probs=58.8

Q ss_pred             cccccchhhhHHHHhhhhcCCCCCeEEEECCCccccHHHHHhhC----C--------------CCEEEEEeCCHHHHHHH
Q 009871           54 DRFFKDRHYLDKEWGRYFSGAGRKDVLEVGCGAGNTIFPLIAAY----P--------------DVFVYACDFSPRAVNLV  115 (523)
Q Consensus        54 ~~f~~~~~~l~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~----~--------------~~~v~gvD~S~~~l~~a  115 (523)
                      +.|+=+++ +.+.+.+++.+..+.+|+|-.||+|.++..+.++.    .              ...++|+|+++.+...|
T Consensus       144 GqfyTP~~-Iv~~mv~ll~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la  222 (524)
T d2ar0a1         144 GQYFTPRP-LIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLA  222 (524)
T ss_dssp             -CCCCCHH-HHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHH
T ss_pred             chhccccc-hhHhhhhcccCccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHH
Confidence            44553333 44444566666778899999999999997765531    1              11489999999999999


Q ss_pred             HhccccCCC------cEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871          116 MTHKDFTET------RVSTFVCDLISDDLSRQISPSSIDIVTM  152 (523)
Q Consensus       116 ~~~~~~~~~------~v~~~~~d~~~~~~~~~~~~~~fD~V~~  152 (523)
                      +-+......      .-.+...+....+   .....+||+|++
T Consensus       223 ~~nl~l~~~~~~i~~~~~~~~~~~l~~d---~~~~~kfD~Ii~  262 (524)
T d2ar0a1         223 LMNCLLHDIEGNLDHGGAIRLGNTLGSD---GENLPKAHIVAT  262 (524)
T ss_dssp             HHHHHTTTCCCBGGGTBSEEESCTTSHH---HHTSCCEEEEEE
T ss_pred             HHHHHhhcccccccccchhhhhhhhhhc---ccccccceeEEe
Confidence            875432211      1122333332211   123467999999

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=94.68  E-value=0.13  Score=43.03  Aligned_cols=109  Identities=12%  Similarity=0.091  Sum_probs=61.7

Q ss_pred             cCCCCCCCCeEEEECCCccHHHHHH-Hh-cCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhh
Q 009871          329 RNPTIVAGKKVLELGCGCGGICSMV-AA-GSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAI  406 (523)
Q Consensus       329 ~~~~~~~~~~VLElG~G~G~l~~~~-a~-~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~  406 (523)
                      +.....+|.+||=+|||..++.... ++ .|+.+|+++|.+++-++.+++.    +..      .+....-.+.......
T Consensus        21 ~~a~~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~l----Ga~------~~i~~~~~d~~~~~~~   90 (174)
T d1p0fa2          21 NTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIEL----GAT------ECLNPKDYDKPIYEVI   90 (174)
T ss_dssp             TTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHT----TCS------EEECGGGCSSCHHHHH
T ss_pred             HhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHc----CCc------EEEcCCCchhHHHHHH
Confidence            4456779999999999854444332 32 3778999999999888888752    221      1111111111111111


Q ss_pred             hhhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee
Q 009871          407 KEENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIF  461 (523)
Q Consensus       407 ~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~  461 (523)
                      ....++.+|+|+-+      ......+......+.        +++|.+++....
T Consensus        91 ~~~~~~G~d~vid~------~g~~~~~~~~~~~~~--------~~~G~~v~vG~~  131 (174)
T d1p0fa2          91 CEKTNGGVDYAVEC------AGRIETMMNALQSTY--------CGSGVTVVLGLA  131 (174)
T ss_dssp             HHHTTSCBSEEEEC------SCCHHHHHHHHHTBC--------TTTCEEEECCCC
T ss_pred             HHhcCCCCcEEEEc------CCCchHHHHHHHHHH--------HhcCceEEEEEe
Confidence            23345678988854      233445555554441        346777776543

>d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase AviRa
domain: rRNA methyltransferase AviRa
species: Streptomyces viridochromogenes [TaxId: 1938]

Probab=94.60  E-value=0.058  Score=47.93  Aligned_cols=135  Identities=11%  Similarity=0.051  Sum_probs=83.8

Q ss_pred             ccccchhHHHHHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcC-----------------------------------
Q 009871          313 GLMLWESAHLMAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGS-----------------------------------  357 (523)
Q Consensus       313 G~~~W~~a~~la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~-----------------------------------  357 (523)
                      ++.+=.++-+|+..+.... ...+..++|--||+|-+.+.+|...                                   
T Consensus        29 ~~~~~Laa~il~~al~l~~-w~~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~  107 (249)
T d1o9ga_          29 AFPVRLATEIFQRALARLP-GDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTAR  107 (249)
T ss_dssp             CCCHHHHHHHHHHHHHTSS-CCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHH
T ss_pred             CcchHHHHHHHHHHhhhhc-CCCCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHH
Confidence            3333356666666654322 2345579999999998877766421                                   


Q ss_pred             ------CCEEEEEcCChHHHHHH---HHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCccEEEEccccCC---
Q 009871          358 ------ADLVVATDGDSIALDLL---AQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVILGTDVSYI---  425 (523)
Q Consensus       358 ------~~~V~~~D~~~~~l~~~---~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~fD~Ii~~d~~y~---  425 (523)
                            ...+++.|+++.+++.+   +.|+...++.   ..+.+...|+.+.......  ..+..+++||++...=.   
T Consensus       108 ~~~~~~~~~i~G~D~d~~ai~~A~~~r~n~~~Agl~---~~i~i~~~d~f~~~~~~~~--~~~~~~GlIVtNPPYGERl~  182 (249)
T d1o9ga_         108 ELERREQSERFGKPSYLEAAQAARRLRERLTAEGGA---LPCAIRTADVFDPRALSAV--LAGSAPDVVLTDLPYGERTH  182 (249)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHTTSS---CCEEEEECCTTCGGGHHHH--HTTCCCSEEEEECCGGGSSS
T ss_pred             hccccccCCccccccCHHHHHHHHHHHHHHHHcCCC---ceeeeeecchhccCcchhc--cCCCCCCEEEeCCCcccccc
Confidence                  01467899999999988   4688887776   5678877777554332221  13457899999754321   


Q ss_pred             --CC----ChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeec
Q 009871          426 --PE----AILPLFATAKELTASSNKSLREDQQPAFILCHIFR  462 (523)
Q Consensus       426 --~~----~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r  462 (523)
                        .+    .+..+...+++.+         .....++++...|
T Consensus       183 ~~~~~~~~~~~~~~~~l~~~~---------p~~s~~~it~~~~  216 (249)
T d1o9ga_         183 WEGQVPGQPVAGLLRSLASAL---------PAHAVIAVTDRSR  216 (249)
T ss_dssp             SSSCCCHHHHHHHHHHHHHHS---------CTTCEEEEEESSS
T ss_pred             ccccchHHHHHHHHHHHHccC---------CCCcEEEEeCchh
Confidence              12    2556666677766         3345666665443

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.56  E-value=0.084  Score=44.12  Aligned_cols=103  Identities=17%  Similarity=0.210  Sum_probs=63.4

Q ss_pred             cCCCCCCCCeEEEECCC--ccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhh
Q 009871          329 RNPTIVAGKKVLELGCG--CGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAI  406 (523)
Q Consensus       329 ~~~~~~~~~~VLElG~G--~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~  406 (523)
                      +...+.+|.+||=.|++  .|.++..+|+....+|++++.+++-++.+++    .+..      .  .++-.+.+..+.+
T Consensus        22 ~~~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~----~Ga~------~--vi~~~~~~~~~~i   89 (174)
T d1yb5a2          22 HSACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQ----NGAH------E--VFNHREVNYIDKI   89 (174)
T ss_dssp             TTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH----TTCS------E--EEETTSTTHHHHH
T ss_pred             HHhCCCCCCEEEEEeccccccccccccccccCcccccccccccccccccc----cCcc------c--ccccccccHHHHh
Confidence            44456789999999973  3434444555555689999988877776653    2221      1  1233443333333


Q ss_pred             hh-hcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEE
Q 009871          407 KE-ENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCH  459 (523)
Q Consensus       407 ~~-~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~  459 (523)
                      .. .....+|+|+.+       .-.+.+....+++         +++|.+++..
T Consensus        90 ~~~t~~~g~d~v~d~-------~g~~~~~~~~~~l---------~~~G~iv~~G  127 (174)
T d1yb5a2          90 KKYVGEKGIDIIIEM-------LANVNLSKDLSLL---------SHGGRVIVVG  127 (174)
T ss_dssp             HHHHCTTCEEEEEES-------CHHHHHHHHHHHE---------EEEEEEEECC
T ss_pred             hhhhccCCceEEeec-------ccHHHHHHHHhcc---------CCCCEEEEEe
Confidence            32 245679999975       1234577777788         5688888764

>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HaeIII
species: Haemophilus aegyptius [TaxId: 197575]

Probab=94.55  E-value=0.14  Score=47.09  Aligned_cols=123  Identities=12%  Similarity=0.104  Sum_probs=71.9

Q ss_pred             eEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCccEE
Q 009871          338 KVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGFEVI  417 (523)
Q Consensus       338 ~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~fD~I  417 (523)
                      +||||-||.|++..-+-..|...|.++|+++.+.+..+.|...          .....|..+.+. .   .  -...|+|
T Consensus         2 k~~~lF~G~Gg~~~gl~~aG~~~~~a~e~d~~a~~~~~~N~~~----------~~~~~Di~~~~~-~---~--~~~~dll   65 (324)
T d1dcta_           2 NLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNHSA----------KLIKGDISKISS-D---E--FPKCDGI   65 (324)
T ss_dssp             EEEEESCSSCHHHHHHHHHTCEEEEEEECCHHHHHHHHHHCCS----------EEEESCTTTSCG-G---G--SCCCSEE
T ss_pred             eEEEeCcCcCHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHCCC----------CCccCChhhCCH-h---H--cccccEE
Confidence            7999999999887766666777788999999999888877421          122334433211 1   1  2468999


Q ss_pred             EEccccCC---------CCC-hHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCC------hhHHHHHHHHcCCEEE
Q 009871          418 LGTDVSYI---------PEA-ILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVD------EPSMLSAATQCGFRLV  481 (523)
Q Consensus       418 i~~d~~y~---------~~~-~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~------~~~~~~~~~~~gf~~~  481 (523)
                      +++...-.         .++ -..|+-.+.++++.-      +|. .+++-....-..      ...++..+.+.|+.+.
T Consensus        66 ~~g~PCq~fS~ag~~~g~~d~r~~l~~~~~~~i~~~------~Pk-~~~lENV~~~~~~~~~~~~~~~l~~l~~lGY~v~  138 (324)
T d1dcta_          66 IGGPPCQSWSEGGSLRGIDDPRGKLFYEYIRILKQK------KPI-FFLAENVKGMMAQRHNKAVQEFIQEFDNAGYDVH  138 (324)
T ss_dssp             EECCCCTTTSSSSCCCCSSSHHHHHHHHHHHHHHHH------CCS-EEEEEEEGGGGSGGGHHHHHHHHHHHHHHHEEEE
T ss_pred             eecccccccccccccccccccccchHHHHHHHHHhh------CCc-eeeccccccccccccchhhHHHHhHHhhCCCccc
Confidence            98855432         112 224555555555222      232 344433322111      1345566677788876


Q ss_pred             EE
Q 009871          482 DK  483 (523)
Q Consensus       482 ~~  483 (523)
                      ..
T Consensus       139 ~~  140 (324)
T d1dcta_         139 II  140 (324)
T ss_dssp             EE
T ss_pred             ee
Confidence            55

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.50  E-value=0.035  Score=46.18  Aligned_cols=102  Identities=20%  Similarity=0.187  Sum_probs=58.7

Q ss_pred             CCCCCCeEEEECCCc-cHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhc
Q 009871          332 TIVAGKKVLELGCGC-GGICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEEN  410 (523)
Q Consensus       332 ~~~~~~~VLElG~G~-G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~  410 (523)
                      ...+|.+||=+|||. |.++..+++..+.+|+++|.+++-++.+++    .+..      .  ..+..+.+..+.+....
T Consensus        24 ~~~~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~~----~Ga~------~--~i~~~~~~~~~~~~~~~   91 (166)
T d1llua2          24 NARPGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELARK----LGAS------L--TVNARQEDPVEAIQRDI   91 (166)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH----TTCS------E--EEETTTSCHHHHHHHHH
T ss_pred             CCCCCCEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhhhc----cCcc------c--cccccchhHHHHHHHhh
Confidence            346888999999975 223333444444799999999988887764    2221      1  12334433333333333


Q ss_pred             CCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee
Q 009871          411 NEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIF  461 (523)
Q Consensus       411 ~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~  461 (523)
                      .+.+|+|+.+       .-...+....++|         +++|.+++....
T Consensus        92 ~g~~~~i~~~-------~~~~~~~~~~~~l---------~~~G~iv~~G~~  126 (166)
T d1llua2          92 GGAHGVLVTA-------VSNSAFGQAIGMA---------RRGGTIALVGLP  126 (166)
T ss_dssp             SSEEEEEECC-------SCHHHHHHHHTTE---------EEEEEEEECCCC
T ss_pred             cCCccccccc-------ccchHHHHHHHHh---------cCCcEEEEEEec
Confidence            3334444432       2244566666788         568888776543

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=94.41  E-value=0.012  Score=51.98  Aligned_cols=35  Identities=17%  Similarity=0.147  Sum_probs=29.5

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCC
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFS  108 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S  108 (523)
                      .+..+|+|+|||.|..+..++.+.+...|.|+|+-
T Consensus        65 ~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG   99 (257)
T d2p41a1          65 TPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKG   99 (257)
T ss_dssp             CCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCC
T ss_pred             cCCCeEEEecCCCChHHHHHHhhcCCCceeEEEec
Confidence            56778999999999999999888655678888884

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=94.02  E-value=0.052  Score=45.25  Aligned_cols=104  Identities=13%  Similarity=0.244  Sum_probs=63.0

Q ss_pred             CCCCCCCeEEEECCCc--cHHHHHHHh-cCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhh
Q 009871          331 PTIVAGKKVLELGCGC--GGICSMVAA-GSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIK  407 (523)
Q Consensus       331 ~~~~~~~~VLElG~G~--G~l~~~~a~-~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~  407 (523)
                      ....++.+||=+|||.  |.++..+++ .+..+|+++|.+++-++.+++.    +..      .  .++..+.+..+.+.
T Consensus        23 ~~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~----Ga~------~--~i~~~~~~~~~~~~   90 (170)
T d1jvba2          23 ASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRA----GAD------Y--VINASMQDPLAEIR   90 (170)
T ss_dssp             TTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHH----TCS------E--EEETTTSCHHHHHH
T ss_pred             hCCCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHc----CCc------e--eeccCCcCHHHHHH
Confidence            4566889999999742  222333333 4778999999999888887753    211      1  12333333333333


Q ss_pred             hh-cCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee
Q 009871          408 EE-NNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIF  461 (523)
Q Consensus       408 ~~-~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~  461 (523)
                      .. .+..||+|+-+      ..-...++..-+++         +|+|.+++....
T Consensus        91 ~~~~~~~~d~vid~------~g~~~~~~~a~~~l---------~~~G~iv~~G~~  130 (170)
T d1jvba2          91 RITESKGVDAVIDL------NNSEKTLSVYPKAL---------AKQGKYVMVGLF  130 (170)
T ss_dssp             HHTTTSCEEEEEES------CCCHHHHTTGGGGE---------EEEEEEEECCSS
T ss_pred             HHhhcccchhhhcc------cccchHHHhhhhhc---------ccCCEEEEeccc
Confidence            22 34579988865      33455566666777         568888877543

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=93.70  E-value=0.044  Score=48.88  Aligned_cols=55  Identities=15%  Similarity=0.148  Sum_probs=42.3

Q ss_pred             HHHHHhcCCCCCCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHH
Q 009871          323 MAAVLARNPTIVAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVT  379 (523)
Q Consensus       323 la~~l~~~~~~~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~  379 (523)
                      |.+.+..... .+|..|||--||+| .++.+|.....+.+++|++++.++.|++++.
T Consensus       201 L~~~lI~~~s-~~gd~VlDpF~GSG-TT~~aa~~~~R~~ig~El~~~y~~~a~~Rl~  255 (256)
T d1g60a_         201 LIERIIRASS-NPNDLVLDCFMGSG-TTAIVAKKLGRNFIGCDMNAEYVNQANFVLN  255 (256)
T ss_dssp             HHHHHHHHHC-CTTCEEEESSCTTC-HHHHHHHHTTCEEEEEESCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhC-CCCCEEEECCCCch-HHHHHHHHcCCeEEEEeCCHHHHHHHHHHHc
Confidence            4444443222 47889999999999 5666666666899999999999999998875

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=93.53  E-value=0.094  Score=43.34  Aligned_cols=102  Identities=20%  Similarity=0.091  Sum_probs=61.4

Q ss_pred             CCCCCCeEEEECCCccHHH-HHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhc
Q 009871          332 TIVAGKKVLELGCGCGGIC-SMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEEN  410 (523)
Q Consensus       332 ~~~~~~~VLElG~G~G~l~-~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~  410 (523)
                      ...++.+||=.|||.-++. ..+++..+.+|+++|.+++-++.+++    .+..        ...+..+.+....+....
T Consensus        24 ~~~~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~----~Ga~--------~~~~~~~~~~~~~~~~~~   91 (168)
T d1rjwa2          24 GAKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKE----LGAD--------LVVNPLKEDAAKFMKEKV   91 (168)
T ss_dssp             TCCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHH----TTCS--------EEECTTTSCHHHHHHHHH
T ss_pred             CCCCCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhhh----cCcc--------eecccccchhhhhccccc
Confidence            3558899999999875443 33344455689999999988777754    2221        123344433333333444


Q ss_pred             CCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee
Q 009871          411 NEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIF  461 (523)
Q Consensus       411 ~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~  461 (523)
                      .+.+|+|+.+       .-...+....+++         +++|.+++....
T Consensus        92 ~~~~~~v~~~-------~~~~~~~~a~~~l---------~~~G~i~~~g~~  126 (168)
T d1rjwa2          92 GGVHAAVVTA-------VSKPAFQSAYNSI---------RRGGACVLVGLP  126 (168)
T ss_dssp             SSEEEEEESS-------CCHHHHHHHHHHE---------EEEEEEEECCCC
T ss_pred             CCCceEEeec-------CCHHHHHHHHHHh---------ccCCceEecccc
Confidence            4444444332       2356677888888         568888876543

>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNMT2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.30  E-value=0.19  Score=46.63  Aligned_cols=140  Identities=19%  Similarity=0.262  Sum_probs=76.9

Q ss_pred             CeEEEECCCccHHHHHHHhcCC--CEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCCc
Q 009871          337 KKVLELGCGCGGICSMVAAGSA--DLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEGF  414 (523)
Q Consensus       337 ~~VLElG~G~G~l~~~~a~~~~--~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~f  414 (523)
                      .+|+||-||.|++...+-..|.  .-|.++|+++.+++..+.|...       .  .+..-|..+.. .   ..++...+
T Consensus         3 ~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~~n~~~-------~--~~~~~di~~~~-~---~~~~~~~~   69 (343)
T d1g55a_           3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPH-------T--QLLAKTIEGIT-L---EEFDRLSF   69 (343)
T ss_dssp             EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTT-------S--CEECSCGGGCC-H---HHHHHHCC
T ss_pred             CEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHHHHCCC-------C--CcccCchhhCC-H---hHcCCCCc
Confidence            4799999999988766655564  3477999999999988877421       0  11111111111 1   12222378


Q ss_pred             cEEEEccccCC----------CCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCC----hhHHHHHHHHcCCEE
Q 009871          415 EVILGTDVSYI----------PEAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVD----EPSMLSAATQCGFRL  480 (523)
Q Consensus       415 D~Ii~~d~~y~----------~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~----~~~~~~~~~~~gf~~  480 (523)
                      |+++++...-.          .+....|+-.+.++++.-.      -.+.+++........    .+.+++.+++.|+.+
T Consensus        70 Dll~ggpPCq~fS~ag~~~~~~d~r~~l~~~~~~~i~~~~------~kPk~~i~ENV~~l~~~~~~~~i~~~l~~~GY~v  143 (343)
T d1g55a_          70 DMILMSPPCQPFTRIGRQGDMTDSRTNSFLHILDILPRLQ------KLPKYILLENVKGFEVSSTRDLLIQTIENCGFQY  143 (343)
T ss_dssp             SEEEECCC------------------CHHHHHHHHGGGCS------SCCSEEEEEEETTGGGSHHHHHHHHHHHHTTEEE
T ss_pred             cEEEeecccccccccccccccccccccccchhhhhHhhhc------CCCceeeeeccCCcccchhhHHHHhhhhcccccc
Confidence            99998855432          1123356666666662211      023344444443332    345778889999998


Q ss_pred             EEEcCCCCCCCCcch
Q 009871          481 VDKWPSKNSASPSES  495 (523)
Q Consensus       481 ~~~~~~~~~~~~~~~  495 (523)
                      ....-...++|..|.
T Consensus       144 ~~~vlna~dyGvPQ~  158 (343)
T d1g55a_         144 QEFLLSPTSLGIPNS  158 (343)
T ss_dssp             EEEEECGGGGTCSCC
T ss_pred             ceeeeeccccCCccc
Confidence            765333344444444

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=93.11  E-value=0.074  Score=48.97  Aligned_cols=45  Identities=11%  Similarity=-0.039  Sum_probs=40.6

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccc
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKD  120 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~  120 (523)
                      .++..|||.=||+|..+....+.  +...+|+|++++.++.|+++..
T Consensus       249 ~~gdiVlDpF~GSGTT~~AA~~l--gR~~Ig~El~~~y~~~a~~Rl~  293 (320)
T d1booa_         249 EPDDLVVDIFGGSNTTGLVAERE--SRKWISFEMKPEYVAASAFRFL  293 (320)
T ss_dssp             CTTCEEEETTCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHGGGS
T ss_pred             cCCCEEEecCCCCcHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHHH
Confidence            67899999999999999888877  6679999999999999998864

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=92.87  E-value=0.55  Score=38.96  Aligned_cols=49  Identities=12%  Similarity=0.244  Sum_probs=35.8

Q ss_pred             cCCCCCCCCeEEEECCCccHHHHHH-Hh-cCCCEEEEEcCChHHHHHHHHH
Q 009871          329 RNPTIVAGKKVLELGCGCGGICSMV-AA-GSADLVVATDGDSIALDLLAQN  377 (523)
Q Consensus       329 ~~~~~~~~~~VLElG~G~G~l~~~~-a~-~~~~~V~~~D~~~~~l~~~~~n  377 (523)
                      ......+|.+||=.|||..++.... ++ .|+.+|+++|.+++-++.+++-
T Consensus        23 ~~~~~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~   73 (176)
T d1d1ta2          23 KTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAV   73 (176)
T ss_dssp             TTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHH
T ss_pred             HhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhc
Confidence            4445678999999999854343332 33 3678999999999999988763

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=92.35  E-value=0.97  Score=37.05  Aligned_cols=92  Identities=14%  Similarity=0.142  Sum_probs=56.0

Q ss_pred             cCCCCCCCCeEEEECCCccHHHHHH---Hh-cCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCC-Ccc
Q 009871          329 RNPTIVAGKKVLELGCGCGGICSMV---AA-GSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNR-DHI  403 (523)
Q Consensus       329 ~~~~~~~~~~VLElG~G~G~l~~~~---a~-~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~-~~~  403 (523)
                      +.....+|.+||=.||| | ++.++   ++ .++..|+++|.+++-++.+++-    +..      .+  .+..+. +..
T Consensus        22 ~~~~~~~G~tVlI~GaG-G-vG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~l----Ga~------~~--i~~~~~~~~~   87 (176)
T d2fzwa2          22 NTAKLEPGSVCAVFGLG-G-VGLAVIMGCKVAGASRIIGVDINKDKFARAKEF----GAT------EC--INPQDFSKPI   87 (176)
T ss_dssp             TTTCCCTTCEEEEECCS-H-HHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHH----TCS------EE--ECGGGCSSCH
T ss_pred             HhhCCCCCCEEEEecch-h-HHHHHHHHHHHHhcCceEEEcccHHHHHHHHHh----CCc------EE--EeCCchhhHH
Confidence            44566799999999997 4 33333   33 3778999999999888887752    111      11  122111 111


Q ss_pred             -hhhhhhcCCCccEEEEccccCCCCChHHHHHHHHHHh
Q 009871          404 -EAIKEENNEGFEVILGTDVSYIPEAILPLFATAKELT  440 (523)
Q Consensus       404 -~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll  440 (523)
                       ..+....+..+|+|+-+      ..-..+++....++
T Consensus        88 ~~~~~~~~~~g~D~vid~------~G~~~~~~~~~~~~  119 (176)
T d2fzwa2          88 QEVLIEMTDGGVDYSFEC------IGNVKVMRAALEAC  119 (176)
T ss_dssp             HHHHHHHTTSCBSEEEEC------SCCHHHHHHHHHTB
T ss_pred             HHHHHHHcCCCCcEeeec------CCCHHHHHHHHHhh
Confidence             12223345679998865      33456777777777

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=92.33  E-value=0.07  Score=48.16  Aligned_cols=46  Identities=22%  Similarity=0.328  Sum_probs=39.1

Q ss_pred             CCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHh
Q 009871          334 VAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTA  380 (523)
Q Consensus       334 ~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~  380 (523)
                      .+|..|||.-||+| .++.+|....++.+++|++++.++.+++++..
T Consensus       206 ~~gdiVLDpF~GSG-TT~~Aa~~lgR~~ig~El~~~y~~~a~~Ri~~  251 (279)
T d1eg2a_         206 HPGSTVLDFFAGSG-VTARVAIQEGRNSICTDAAPVFKEYYQKQLTF  251 (279)
T ss_dssp             CTTCEEEETTCTTC-HHHHHHHHHTCEEEEEESSTHHHHHHHHHHHH
T ss_pred             CCCCEEEecCCCCc-HHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHH
Confidence            37889999999999 55566665567999999999999999998875

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=92.32  E-value=0.13  Score=42.73  Aligned_cols=101  Identities=16%  Similarity=0.108  Sum_probs=61.5

Q ss_pred             CCCCCeEEEECCCccHHH-HHHHh-cCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhh-h
Q 009871          333 IVAGKKVLELGCGCGGIC-SMVAA-GSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKE-E  409 (523)
Q Consensus       333 ~~~~~~VLElG~G~G~l~-~~~a~-~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~-~  409 (523)
                      ..+|.+||=+|||..++. ..+++ .++..|+++|.+++-++.+++.    +..      .  .++..+ +..+.... .
T Consensus        30 ~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~----ga~------~--~i~~~~-~~~~~~~~~~   96 (172)
T d1h2ba2          30 LYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERL----GAD------H--VVDARR-DPVKQVMELT   96 (172)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHT----TCS------E--EEETTS-CHHHHHHHHT
T ss_pred             cCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhc----ccc------e--eecCcc-cHHHHHHHhh
Confidence            457889999999865443 23333 4788999999999877777642    111      1  123222 22222222 2


Q ss_pred             cCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee
Q 009871          410 NNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIF  461 (523)
Q Consensus       410 ~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~  461 (523)
                      ....+|+|+-+      ..-...++...+++         +++|+++++...
T Consensus        97 ~~~g~d~vid~------~g~~~~~~~a~~~l---------~~~G~iv~~G~~  133 (172)
T d1h2ba2          97 RGRGVNVAMDF------VGSQATVDYTPYLL---------GRMGRLIIVGYG  133 (172)
T ss_dssp             TTCCEEEEEES------SCCHHHHHHGGGGE---------EEEEEEEECCCS
T ss_pred             CCCCceEEEEe------cCcchHHHHHHHHH---------hCCCEEEEEeCc
Confidence            34568888855      33445567777777         568888876543

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.23  E-value=0.074  Score=44.24  Aligned_cols=45  Identities=18%  Similarity=0.169  Sum_probs=32.9

Q ss_pred             CCCCCCeEEEECCC-ccHHHHHHHhcCCCEEEEEcCChHHHHHHHH
Q 009871          332 TIVAGKKVLELGCG-CGGICSMVAAGSADLVVATDGDSIALDLLAQ  376 (523)
Q Consensus       332 ~~~~~~~VLElG~G-~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~  376 (523)
                      ...+|.+||-+|+| .|.++..+++....+|+++|.+++-++.+++
T Consensus        24 ~~~~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~   69 (168)
T d1piwa2          24 GCGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMK   69 (168)
T ss_dssp             TCSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHH
T ss_pred             CcCCCCEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhhc
Confidence            45689999999998 3434444444434589999999988888765

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=92.17  E-value=0.11  Score=44.47  Aligned_cols=48  Identities=15%  Similarity=0.137  Sum_probs=39.6

Q ss_pred             cCCCCCeEEEECCCc-cccHHHHHhhCCCCEEEEEeCCHHHHHHHHhcc
Q 009871           72 SGAGRKDVLEVGCGA-GNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHK  119 (523)
Q Consensus        72 ~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~  119 (523)
                      ...++.+||-+|||. |..+..+++......|+++|.++..++.|++..
T Consensus        22 ~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~G   70 (195)
T d1kola2          22 GVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQG   70 (195)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTT
T ss_pred             CCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhcc
Confidence            346789999999998 666777777665668999999999999999863

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=92.08  E-value=0.064  Score=49.43  Aligned_cols=47  Identities=13%  Similarity=0.063  Sum_probs=38.9

Q ss_pred             CCCCeEEEECCCccHHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhc
Q 009871          334 VAGKKVLELGCGCGGICSMVAAGSADLVVATDGDSIALDLLAQNVTAN  381 (523)
Q Consensus       334 ~~~~~VLElG~G~G~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n  381 (523)
                      .+|..|||.-||+| -++.+|.....+.+++|++++.++.+++++..+
T Consensus       249 ~~gdiVlDpF~GSG-TT~~AA~~lgR~~Ig~El~~~y~~~a~~Rl~~~  295 (320)
T d1booa_         249 EPDDLVVDIFGGSN-TTGLVAERESRKWISFEMKPEYVAASAFRFLDN  295 (320)
T ss_dssp             CTTCEEEETTCTTC-HHHHHHHHTTCEEEEEESCHHHHHHHHGGGSCS
T ss_pred             cCCCEEEecCCCCc-HHHHHHHHcCCcEEEEeCCHHHHHHHHHHHHhc
Confidence            37889999999999 556666666689999999999999998876553

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=91.99  E-value=0.74  Score=37.95  Aligned_cols=95  Identities=15%  Similarity=0.136  Sum_probs=56.7

Q ss_pred             hcCCCCCCCCeEEEECCCccHHH-HHHHh-cCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCC-Ccch
Q 009871          328 ARNPTIVAGKKVLELGCGCGGIC-SMVAA-GSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNR-DHIE  404 (523)
Q Consensus       328 ~~~~~~~~~~~VLElG~G~G~l~-~~~a~-~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~-~~~~  404 (523)
                      .......+|.+||=+|+|-+++. ..+++ .++.+|+++|.+++-++.+++.    +..      .  ..++.+. +...
T Consensus        21 ~~~~~vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~----Ga~------~--~i~~~~~~~~~~   88 (176)
T d2jhfa2          21 VKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEV----GAT------E--CVNPQDYKKPIQ   88 (176)
T ss_dssp             HTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT----TCS------E--EECGGGCSSCHH
T ss_pred             HHhhCCCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHh----CCe------e--EEecCCchhHHH
Confidence            34456679999999999744332 22233 3678999999999888887653    211      1  1222221 1221


Q ss_pred             h-hhhhcCCCccEEEEccccCCCCChHHHHHHHHHHh
Q 009871          405 A-IKEENNEGFEVILGTDVSYIPEAILPLFATAKELT  440 (523)
Q Consensus       405 ~-~~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll  440 (523)
                      . .....++.+|+|+-+      ......+.....++
T Consensus        89 ~~~~~~~~~G~D~vid~------~G~~~~~~~a~~~~  119 (176)
T d2jhfa2          89 EVLTEMSNGGVDFSFEV------IGRLDTMVTALSCC  119 (176)
T ss_dssp             HHHHHHTTSCBSEEEEC------SCCHHHHHHHHHHB
T ss_pred             HHHHHHhcCCCCEEEec------CCchhHHHHHHHHH
Confidence            1 223345688988865      44556667666677

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=91.78  E-value=0.25  Score=41.13  Aligned_cols=105  Identities=11%  Similarity=0.092  Sum_probs=64.0

Q ss_pred             cCCCCCCCCeEEEECCCcc--HHHHHHHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhh
Q 009871          329 RNPTIVAGKKVLELGCGCG--GICSMVAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAI  406 (523)
Q Consensus       329 ~~~~~~~~~~VLElG~G~G--~l~~~~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~  406 (523)
                      +...+.+|.+||=.|+|.|  .++..+|+..+.+|+++|.+++-++.+++.    +..        ..++..+.+..+.+
T Consensus        22 ~~~~l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~l----Ga~--------~vi~~~~~d~~~~v   89 (179)
T d1qora2          22 KTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKA----GAW--------QVINYREEDLVERL   89 (179)
T ss_dssp             TTSCCCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHH----TCS--------EEEETTTSCHHHHH
T ss_pred             HHhCCCCCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHhc----CCe--------EEEECCCCCHHHHH
Confidence            3445678999999988764  333444555556899999999888887642    221        12345554444444


Q ss_pred             hhh-cCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEee
Q 009871          407 KEE-NNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHIF  461 (523)
Q Consensus       407 ~~~-~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~  461 (523)
                      ..+ .+..+|+|+-+  .    . .+.+.....++         +++|.+++....
T Consensus        90 ~~~t~g~g~d~v~d~--~----g-~~~~~~~~~~l---------~~~G~~v~~g~~  129 (179)
T d1qora2          90 KEITGGKKVRVVYDS--V----G-RDTWERSLDCL---------QRRGLMVSFGNS  129 (179)
T ss_dssp             HHHTTTCCEEEEEEC--S----C-GGGHHHHHHTE---------EEEEEEEECCCT
T ss_pred             HHHhCCCCeEEEEeC--c----c-HHHHHHHHHHH---------hcCCeeeecccc
Confidence            443 34578988865  1    1 12355666677         457877665433

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.59  E-value=0.29  Score=43.56  Aligned_cols=85  Identities=20%  Similarity=0.239  Sum_probs=60.4

Q ss_pred             CCCCCeEEEECCCccHHHHHHHhc---CCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhh-
Q 009871          333 IVAGKKVLELGCGCGGICSMVAAG---SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKE-  408 (523)
Q Consensus       333 ~~~~~~VLElG~G~G~l~~~~a~~---~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~-  408 (523)
                      .++|+.||=-|++.| ++..+|..   .+.+|+++|.+++.++.+.+.+...+..   .++.+...|..+.+....+-. 
T Consensus         7 ~lk~Kv~lITGas~G-IG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~---~~~~~~~~Dls~~~~v~~~v~~   82 (257)
T d1xg5a_           7 RWRDRLALVTGASGG-IGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYP---GTLIPYRCDLSNEEDILSMFSA   82 (257)
T ss_dssp             GGTTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCS---SEEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCC---ceEEEEEccCCCHHHHHHHHHH
Confidence            368999999999987 77776654   2458999999998888877766664432   466777888887655433211 


Q ss_pred             --hcCCCccEEEEcc
Q 009871          409 --ENNEGFEVILGTD  421 (523)
Q Consensus       409 --~~~~~fD~Ii~~d  421 (523)
                        -..++.|++|.+-
T Consensus        83 ~~~~~g~iD~lVnnA   97 (257)
T d1xg5a_          83 IRSQHSGVDICINNA   97 (257)
T ss_dssp             HHHHHCCCSEEEECC
T ss_pred             HHHhcCCCCEEEecc
Confidence              0125799999664

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=90.91  E-value=0.17  Score=44.73  Aligned_cols=44  Identities=20%  Similarity=0.146  Sum_probs=39.6

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhcc
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHK  119 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~  119 (523)
                      .++..|||.=||+|.++....+.  +.+.+|+|++++.++.|+++.
T Consensus       211 ~~gd~VlDpF~GSGTT~~aa~~~--~R~~ig~El~~~y~~~a~~Rl  254 (256)
T d1g60a_         211 NPNDLVLDCFMGSGTTAIVAKKL--GRNFIGCDMNAEYVNQANFVL  254 (256)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHH
T ss_pred             CCCCEEEECCCCchHHHHHHHHc--CCeEEEEeCCHHHHHHHHHHH
Confidence            67899999999999999888777  567999999999999999875

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.89  E-value=0.56  Score=42.58  Aligned_cols=90  Identities=18%  Similarity=0.268  Sum_probs=62.4

Q ss_pred             CCCCCCCeEEEECCCccHHHHHHHhc---CCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhh
Q 009871          331 PTIVAGKKVLELGCGCGGICSMVAAG---SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIK  407 (523)
Q Consensus       331 ~~~~~~~~VLElG~G~G~l~~~~a~~---~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~  407 (523)
                      |..++|+.+|=-|++.| ++..++..   .+.+|+++|.+++-++.+.+.+..+.......++.+...|..+.+....+.
T Consensus         7 ~g~L~gKvalITGas~G-IG~aia~~la~~Ga~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~   85 (297)
T d1yxma1           7 PGLLQGQVAIVTGGATG-IGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLV   85 (297)
T ss_dssp             TTTTTTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHH
T ss_pred             CCCCCCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHHHHHHHH
Confidence            34579999999999987 77766543   235899999999888887776766544333456777788888765544332


Q ss_pred             hh---cCCCccEEEEcc
Q 009871          408 EE---NNEGFEVILGTD  421 (523)
Q Consensus       408 ~~---~~~~fD~Ii~~d  421 (523)
                      ..   ..+..|++|.+-
T Consensus        86 ~~~~~~~G~iDiLVnnA  102 (297)
T d1yxma1          86 KSTLDTFGKINFLVNNG  102 (297)
T ss_dssp             HHHHHHHSCCCEEEECC
T ss_pred             HHHHHHhCCeEEEEeec
Confidence            11   125799999664

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=90.76  E-value=0.072  Score=42.34  Aligned_cols=68  Identities=9%  Similarity=0.011  Sum_probs=45.9

Q ss_pred             eEEEECCCccccHHHHHhh--CCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871           78 DVLEVGCGAGNTIFPLIAA--YPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM  152 (523)
Q Consensus        78 ~iLDiGcG~G~~~~~l~~~--~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~  152 (523)
                      +|+=+|+  |..+..+++.  ..+..|+.+|.+++.++.+++..     .+.++.+|..+.+.-....-...|.+++
T Consensus         2 ~IvI~G~--G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~-----~~~vi~Gd~~~~~~l~~~~i~~a~~vv~   71 (132)
T d1lssa_           2 YIIIAGI--GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEI-----DALVINGDCTKIKTLEDAGIEDADMYIA   71 (132)
T ss_dssp             EEEEECC--SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC-----SSEEEESCTTSHHHHHHTTTTTCSEEEE
T ss_pred             EEEEECC--CHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhh-----hhhhccCcccchhhhhhcChhhhhhhcc
Confidence            4555665  7777766665  23678999999999998876642     3578899988643221122346788877

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=90.70  E-value=1.4  Score=36.03  Aligned_cols=94  Identities=14%  Similarity=0.177  Sum_probs=56.2

Q ss_pred             cCCCCCCCCeEEEECCCccHHHHHH-H-hcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCc-chh
Q 009871          329 RNPTIVAGKKVLELGCGCGGICSMV-A-AGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDH-IEA  405 (523)
Q Consensus       329 ~~~~~~~~~~VLElG~G~G~l~~~~-a-~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~-~~~  405 (523)
                      ......+|.+||=+|||.+++.... + +.++..|+++|.+++-++.+++    -+..      .  ..+..+.+. ...
T Consensus        22 ~~a~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~----~GAd------~--~in~~~~~~~~~~   89 (175)
T d1cdoa2          22 NTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKV----FGAT------D--FVNPNDHSEPISQ   89 (175)
T ss_dssp             TTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TTCC------E--EECGGGCSSCHHH
T ss_pred             HhhCCCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHH----cCCc------E--EEcCCCcchhHHH
Confidence            4456778999999999886554333 2 3367799999999987777764    2211      1  123322221 111


Q ss_pred             h-hhhcCCCccEEEEccccCCCCChHHHHHHHHHHh
Q 009871          406 I-KEENNEGFEVILGTDVSYIPEAILPLFATAKELT  440 (523)
Q Consensus       406 ~-~~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll  440 (523)
                      . .......+|+|+-+      ......+.....++
T Consensus        90 ~~~~~~~~G~d~vid~------~G~~~~~~~a~~~~  119 (175)
T d1cdoa2          90 VLSKMTNGGVDFSLEC------VGNVGVMRNALESC  119 (175)
T ss_dssp             HHHHHHTSCBSEEEEC------SCCHHHHHHHHHTB
T ss_pred             HHHhhccCCcceeeee------cCCHHHHHHHHHHh
Confidence            1 12234578888755      34455666666666

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=90.43  E-value=0.22  Score=41.87  Aligned_cols=132  Identities=13%  Similarity=0.126  Sum_probs=69.1

Q ss_pred             HhcCCCCCCCCeEEEECCCccHHHHH----HHhcCCCEEEEEcCChHHHHHHHH---HHHhcCCCCCCCceEEEeeecCC
Q 009871          327 LARNPTIVAGKKVLELGCGCGGICSM----VAAGSADLVVATDGDSIALDLLAQ---NVTANLKPPFLAKLITKRLEWGN  399 (523)
Q Consensus       327 l~~~~~~~~~~~VLElG~G~G~l~~~----~a~~~~~~V~~~D~~~~~l~~~~~---n~~~n~~~~~~~~v~~~~ldw~~  399 (523)
                      |.......++++||=|||| | .+..    ++..++.+++.++.+++.++.+..   ++..+.      ...+...+|.+
T Consensus         9 l~~~~~~l~~k~vlIlGaG-G-aarai~~al~~~g~~~i~i~nR~~~~~~~~~~l~~~~~~~~------~~~~~~~~~~~   80 (182)
T d1vi2a1           9 IKESGFDIKGKTMVLLGAG-G-ASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENT------DCVVTVTDLAD   80 (182)
T ss_dssp             HHHTTCCCTTCEEEEECCS-H-HHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHS------SCEEEEEETTC
T ss_pred             HHHcCCCcCCCEEEEECCc-H-HHHHHHHHHhhcCCceEeeeccchHHHHHHHHHHHHHHhhc------CcceEeeeccc
Confidence            3333334588999999998 4 3322    334578899999998765554432   223322      12345567765


Q ss_pred             CCcchhhhhhcCCCccEEEEccccCCC-CChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEeecCCChhHHHHHHHHcCC
Q 009871          400 RDHIEAIKEENNEGFEVILGTDVSYIP-EAILPLFATAKELTASSNKSLREDQQPAFILCHIFRQVDEPSMLSAATQCGF  478 (523)
Q Consensus       400 ~~~~~~~~~~~~~~fD~Ii~~d~~y~~-~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~~r~~~~~~~~~~~~~~gf  478 (523)
                      ...+...    ...+|+||.+-.+-.. ...+.+..-+ ..+         +++..++  ...-.+....|++.+++.|.
T Consensus        81 ~~~~~~~----~~~~diiIN~Tp~G~~~~~~~~~~~~~-~~~---------~~~~~v~--Di~Y~p~~T~ll~~a~~~g~  144 (182)
T d1vi2a1          81 QQAFAEA----LASADILTNGTKVGMKPLENESLVNDI-SLL---------HPGLLVT--ECVYNPHMTKLLQQAQQAGC  144 (182)
T ss_dssp             HHHHHHH----HHTCSEEEECSSTTSTTSCSCCSCCCG-GGS---------CTTCEEE--ECCCSSSSCHHHHHHHTTTC
T ss_pred             ccchhhh----hcccceeccccCCccccccchhhhhHH-Hhh---------hcchhhH--HhhcCccccHHHHHHHHCcC
Confidence            4332211    1378999976433221 1111110000 123         2344333  22223333468899999999


Q ss_pred             EEEE
Q 009871          479 RLVD  482 (523)
Q Consensus       479 ~~~~  482 (523)
                      ++..
T Consensus       145 ~~i~  148 (182)
T d1vi2a1         145 KTID  148 (182)
T ss_dssp             EEEC
T ss_pred             eEec
Confidence            8754

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.17  E-value=0.091  Score=43.64  Aligned_cols=46  Identities=24%  Similarity=0.112  Sum_probs=37.9

Q ss_pred             CCCCCeEEEECCC-ccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhcc
Q 009871           73 GAGRKDVLEVGCG-AGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHK  119 (523)
Q Consensus        73 ~~~~~~iLDiGcG-~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~  119 (523)
                      ..++.+||-+||| .|..+..+++.. +++|+++|.|++.++.|++..
T Consensus        25 ~~~g~~vlI~GaG~vG~~a~q~ak~~-G~~vi~~~~~~~k~~~a~~lG   71 (168)
T d1piwa2          25 CGPGKKVGIVGLGGIGSMGTLISKAM-GAETYVISRSSRKREDAMKMG   71 (168)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHH-TCEEEEEESSSTTHHHHHHHT
T ss_pred             cCCCCEEEEECCCCcchhHHHHhhhc-cccccccccchhHHHHhhccC
Confidence            3578899999999 666677777664 789999999999999998853

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.62  E-value=0.6  Score=41.24  Aligned_cols=96  Identities=11%  Similarity=0.081  Sum_probs=63.0

Q ss_pred             CCCeEEEECCCccHHHHHHHhc---CCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhh---
Q 009871          335 AGKKVLELGCGCGGICSMVAAG---SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKE---  408 (523)
Q Consensus       335 ~~~~VLElG~G~G~l~~~~a~~---~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~---  408 (523)
                      .||.+|=-|++.| ++..+|..   .+.+|+++|.+++.++.+...+.....   ..++.+...|..+.+..+.+..   
T Consensus         2 ~GKvalITGas~G-IG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~~   77 (254)
T d2gdza1           2 NGKVALVTGAAQG-IGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFE---PQKTLFIQCDVADQQQLRDTFRKVV   77 (254)
T ss_dssp             TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSC---GGGEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcC---CCcEEEEEeecCCHHHHHHHHHHHH
Confidence            5889999999887 77776653   245899999999887776655443221   2467777788887654433311   


Q ss_pred             hcCCCccEEEEccccCCCCChHHHHH
Q 009871          409 ENNEGFEVILGTDVSYIPEAILPLFA  434 (523)
Q Consensus       409 ~~~~~fD~Ii~~d~~y~~~~~~~l~~  434 (523)
                      -.-++.|++|.+--+......+..++
T Consensus        78 ~~~G~iDilVnnAg~~~~~~~~~~~~  103 (254)
T d2gdza1          78 DHFGRLDILVNNAGVNNEKNWEKTLQ  103 (254)
T ss_dssp             HHHSCCCEEEECCCCCCSSSHHHHHH
T ss_pred             HHcCCcCeecccccccccccchheee
Confidence            01258999998866666555444433

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=89.23  E-value=0.71  Score=38.73  Aligned_cols=81  Identities=19%  Similarity=0.092  Sum_probs=53.2

Q ss_pred             CCCCCCCCeEEEECCCccHHHHHHHhc---CCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhh
Q 009871          330 NPTIVAGKKVLELGCGCGGICSMVAAG---SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAI  406 (523)
Q Consensus       330 ~~~~~~~~~VLElG~G~G~l~~~~a~~---~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~  406 (523)
                      .....+|++||=.|++.| ++..++..   .+.+|++++.+++-++.+...+..+..      +.+..+|..+...+.  
T Consensus        17 ~~~~l~gK~vlItGasgG-IG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~------~~~~~~d~~~~~~~~--   87 (191)
T d1luaa1          17 AGGSVKGKKAVVLAGTGP-VGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRFK------VNVTAAETADDASRA--   87 (191)
T ss_dssp             TTSCCTTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHT------CCCEEEECCSHHHHH--
T ss_pred             cCCCCCCCEEEEECCCHH-HHHHHHHHHHhhccchhhcccchHHHHHHHHHHHhccc------hhhhhhhcccHHHHH--
Confidence            345569999999999876 66665543   245899999999888888777665422      233444544433332  


Q ss_pred             hhhcCCCccEEEEcc
Q 009871          407 KEENNEGFEVILGTD  421 (523)
Q Consensus       407 ~~~~~~~fD~Ii~~d  421 (523)
                       .. -+..|++|.+-
T Consensus        88 -~~-~~~iDilin~A  100 (191)
T d1luaa1          88 -EA-VKGAHFVFTAG  100 (191)
T ss_dssp             -HH-TTTCSEEEECC
T ss_pred             -HH-hcCcCeeeecC
Confidence             22 24789998763

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=89.08  E-value=0.49  Score=42.04  Aligned_cols=84  Identities=18%  Similarity=0.193  Sum_probs=57.6

Q ss_pred             CCCCeEEEECCCccHHHHHHHhc---CCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhh--
Q 009871          334 VAGKKVLELGCGCGGICSMVAAG---SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKE--  408 (523)
Q Consensus       334 ~~~~~VLElG~G~G~l~~~~a~~---~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~--  408 (523)
                      ++|+.+|=-|++.| ++..++..   .+.+|+++|.+++.++.+...+......   .++.....|..+.+....+..  
T Consensus         2 l~gK~alITGas~G-IG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~~~~---~~~~~~~~Dvt~~~~v~~~~~~~   77 (258)
T d1iy8a_           2 FTDRVVLITGGGSG-LGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPD---AEVLTTVADVSDEAQVEAYVTAT   77 (258)
T ss_dssp             CTTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCTT---CCEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhCCC---CeEEEEeccCCCHHHHHHHHHHH
Confidence            47899999999987 77665543   2358999999999888776666554332   456777788887655433311  


Q ss_pred             -hcCCCccEEEEcc
Q 009871          409 -ENNEGFEVILGTD  421 (523)
Q Consensus       409 -~~~~~fD~Ii~~d  421 (523)
                       -.-++.|++|.+-
T Consensus        78 ~~~~G~iDiLVnnA   91 (258)
T d1iy8a_          78 TERFGRIDGFFNNA   91 (258)
T ss_dssp             HHHHSCCSEEEECC
T ss_pred             HHHhCCCCEEEECC
Confidence             0125799999663

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=88.68  E-value=0.28  Score=40.45  Aligned_cols=46  Identities=26%  Similarity=0.301  Sum_probs=37.2

Q ss_pred             CCCCCeEEEECCC-ccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhcc
Q 009871           73 GAGRKDVLEVGCG-AGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHK  119 (523)
Q Consensus        73 ~~~~~~iLDiGcG-~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~  119 (523)
                      ..++.+||-+||| .|..+..+++.. +++|+++|.+++-++.|++..
T Consensus        24 ~~~g~~vlV~G~G~vG~~~~~~ak~~-Ga~vi~v~~~~~r~~~a~~~g   70 (170)
T d1e3ja2          24 VQLGTTVLVIGAGPIGLVSVLAAKAY-GAFVVCTARSPRRLEVAKNCG   70 (170)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHTT
T ss_pred             CCCCCEEEEEcccccchhhHhhHhhh-cccccccchHHHHHHHHHHcC
Confidence            3678899999999 456666666664 689999999999999999853

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=88.68  E-value=0.29  Score=43.77  Aligned_cols=45  Identities=18%  Similarity=0.076  Sum_probs=40.4

Q ss_pred             CCCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccc
Q 009871           74 AGRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKD  120 (523)
Q Consensus        74 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~  120 (523)
                      .++..|||-=||+|..+....+.  +.+.+|+|+++..++.|+++..
T Consensus       206 ~~gdiVLDpF~GSGTT~~Aa~~l--gR~~ig~El~~~y~~~a~~Ri~  250 (279)
T d1eg2a_         206 HPGSTVLDFFAGSGVTARVAIQE--GRNSICTDAAPVFKEYYQKQLT  250 (279)
T ss_dssp             CTTCEEEETTCTTCHHHHHHHHH--TCEEEEEESSTHHHHHHHHHHH
T ss_pred             CCCCEEEecCCCCcHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHH
Confidence            68899999999999999888887  5679999999999999998764

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=88.61  E-value=0.43  Score=42.80  Aligned_cols=84  Identities=17%  Similarity=0.162  Sum_probs=59.9

Q ss_pred             CCCCeEEEECCCccHHHHHHHhc---CCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhh-
Q 009871          334 VAGKKVLELGCGCGGICSMVAAG---SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEE-  409 (523)
Q Consensus       334 ~~~~~VLElG~G~G~l~~~~a~~---~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~-  409 (523)
                      ++|+++|=-|++.| ++..+|..   .+.+|+++|.+++-++.+.+.+...+..  ..++.+...|..+.+..+.+... 
T Consensus         2 L~gK~alITGas~G-IG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~   78 (274)
T d1xhla_           2 FSGKSVIITGSSNG-IGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVP--AEKINAVVADVTEASGQDDIINTT   78 (274)
T ss_dssp             CTTCEEEETTCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCC--GGGEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCC--CcceEEEEeeCCCHHHHHHHHHHH
Confidence            47899999999987 77666543   2358999999999898888888776543  24677888888876554333111 


Q ss_pred             --cCCCccEEEEc
Q 009871          410 --NNEGFEVILGT  420 (523)
Q Consensus       410 --~~~~fD~Ii~~  420 (523)
                        .-++.|++|.+
T Consensus        79 ~~~~G~iDilVnn   91 (274)
T d1xhla_          79 LAKFGKIDILVNN   91 (274)
T ss_dssp             HHHHSCCCEEEEC
T ss_pred             HHHcCCceEEEee
Confidence              12589999966

>d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: FkbM-like
domain: Methyltransferase FkbM
species: Methylobacillus flagellatus [TaxId: 405]

Probab=88.31  E-value=0.74  Score=43.54  Aligned_cols=61  Identities=15%  Similarity=0.194  Sum_probs=45.1

Q ss_pred             CCCCeEEEECCCccHHHHHHHhc---CCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEe
Q 009871          334 VAGKKVLELGCGCGGICSMVAAG---SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKR  394 (523)
Q Consensus       334 ~~~~~VLElG~G~G~l~~~~a~~---~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~  394 (523)
                      .++..++|+||-.|..+..+++.   ...+|++++.+|...+.+++|+..|.......++.+..
T Consensus       211 ~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~~n~~~n~~~~I~~~~  274 (395)
T d2py6a1         211 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHG  274 (395)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEEC
T ss_pred             CCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHHhcccccccceEEEEE
Confidence            46679999999999666555543   23589999999999999999999887643333444433

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=88.02  E-value=0.47  Score=42.48  Aligned_cols=84  Identities=17%  Similarity=0.109  Sum_probs=59.8

Q ss_pred             CCCCeEEEECCCccHHHHHHHhc---CCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhh--
Q 009871          334 VAGKKVLELGCGCGGICSMVAAG---SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKE--  408 (523)
Q Consensus       334 ~~~~~VLElG~G~G~l~~~~a~~---~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~--  408 (523)
                      ++|+++|=-|++.| ++..++..   .+.+|+++|.+++-++.+.+.+...+..  ..++.+...|..+.+..+.+..  
T Consensus         3 L~gK~alVTGas~G-IG~aia~~la~~Ga~V~l~~r~~~~l~~~~~~l~~~~~~--~~~~~~~~~Dvs~~~~v~~~~~~~   79 (272)
T d1xkqa_           3 FSNKTVIITGSSNG-IGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVS--EKQVNSVVADVTTEDGQDQIINST   79 (272)
T ss_dssp             TTTCEEEETTCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCC--GGGEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCCEEEEeCcCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCC--CCceEEEEccCCCHHHHHHHHHHH
Confidence            58999999999987 77666543   2358999999999988888777765432  2467778888887655443321  


Q ss_pred             -hcCCCccEEEEc
Q 009871          409 -ENNEGFEVILGT  420 (523)
Q Consensus       409 -~~~~~fD~Ii~~  420 (523)
                       ...++.|++|.+
T Consensus        80 ~~~~g~iDilvnn   92 (272)
T d1xkqa_          80 LKQFGKIDVLVNN   92 (272)
T ss_dssp             HHHHSCCCEEEEC
T ss_pred             HHHhCCceEEEeC
Confidence             112579999966

>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNMT2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.81  E-value=0.12  Score=47.95  Aligned_cols=72  Identities=19%  Similarity=0.152  Sum_probs=52.1

Q ss_pred             CCeEEEECCCccccHHHHHhhCCCCE-EEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871           76 RKDVLEVGCGAGNTIFPLIAAYPDVF-VYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM  152 (523)
Q Consensus        76 ~~~iLDiGcG~G~~~~~l~~~~~~~~-v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~  152 (523)
                      +.+|+|+-||.|.+...|...+-+.+ |.++|+.+.+++..+.+.    +....+..|+.+.+.. .++...+|+++.
T Consensus         2 p~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~~n~----~~~~~~~~di~~~~~~-~~~~~~~Dll~g   74 (343)
T d1g55a_           2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNF----PHTQLLAKTIEGITLE-EFDRLSFDMILM   74 (343)
T ss_dssp             CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHC----TTSCEECSCGGGCCHH-HHHHHCCSEEEE
T ss_pred             CCEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHHHHC----CCCCcccCchhhCCHh-HcCCCCccEEEe
Confidence            46899999999999888876643333 679999999999988764    3345667788765322 122236899988

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=87.42  E-value=0.43  Score=39.75  Aligned_cols=46  Identities=20%  Similarity=0.130  Sum_probs=37.9

Q ss_pred             CCCCCeEEEECCCc-cccHHHHHhhCCCC-EEEEEeCCHHHHHHHHhcc
Q 009871           73 GAGRKDVLEVGCGA-GNTIFPLIAAYPDV-FVYACDFSPRAVNLVMTHK  119 (523)
Q Consensus        73 ~~~~~~iLDiGcG~-G~~~~~l~~~~~~~-~v~gvD~S~~~l~~a~~~~  119 (523)
                      ..++.+||-+|||. |..+..+++.. ++ +|+++|.+++.++.|++..
T Consensus        26 ~~~G~~VlV~GaG~iG~~~~~~ak~~-Ga~~Vi~~~~~~~~~~~a~~lG   73 (182)
T d1vj0a2          26 SFAGKTVVIQGAGPLGLFGVVIARSL-GAENVIVIAGSPNRLKLAEEIG   73 (182)
T ss_dssp             CCBTCEEEEECCSHHHHHHHHHHHHT-TBSEEEEEESCHHHHHHHHHTT
T ss_pred             CCCCCEEEEECCCccchhheeccccc-cccccccccccccccccccccc
Confidence            35789999999985 77777888775 54 7999999999999998863

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=87.39  E-value=0.57  Score=38.88  Aligned_cols=102  Identities=16%  Similarity=0.131  Sum_probs=60.6

Q ss_pred             cCCCCCCCCeEEEECCCccHHHHH---HHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchh
Q 009871          329 RNPTIVAGKKVLELGCGCGGICSM---VAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEA  405 (523)
Q Consensus       329 ~~~~~~~~~~VLElG~G~G~l~~~---~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~  405 (523)
                      +...+.+|.+||=.|+.+ .++.+   +|+....+|++++.+++-.+.+++    .+..      .  ..+..+.+..+.
T Consensus        19 ~~~~~~~g~~VlI~ga~g-~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~~----~Ga~------~--vi~~~~~~~~~~   85 (183)
T d1pqwa_          19 EVGRLSPGERVLIHSATG-GVGMAAVSIAKMIGARIYTTAGSDAKREMLSR----LGVE------Y--VGDSRSVDFADE   85 (183)
T ss_dssp             TTSCCCTTCEEEETTTTS-HHHHHHHHHHHHHTCEEEEEESSHHHHHHHHT----TCCS------E--EEETTCSTHHHH
T ss_pred             HHhCCCCCCEEEEECCCC-Ccccccchhhccccccceeeeccccccccccc----cccc------c--cccCCccCHHHH
Confidence            444567889999988532 24444   444445688888888876666653    2321      1  133444433344


Q ss_pred             hhhh-cCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEE
Q 009871          406 IKEE-NNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCH  459 (523)
Q Consensus       406 ~~~~-~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~  459 (523)
                      +... .+..||+|+.+  +-     .+.++.+.++|         +++|+++.+.
T Consensus        86 v~~~t~~~g~d~v~d~--~g-----~~~~~~~~~~l---------~~~G~~v~~G  124 (183)
T d1pqwa_          86 ILELTDGYGVDVVLNS--LA-----GEAIQRGVQIL---------APGGRFIELG  124 (183)
T ss_dssp             HHHHTTTCCEEEEEEC--CC-----THHHHHHHHTE---------EEEEEEEECS
T ss_pred             HHHHhCCCCEEEEEec--cc-----chHHHHHHHHh---------cCCCEEEEEc
Confidence            4443 34689999964  22     23556666788         5688887764

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=87.11  E-value=0.74  Score=40.78  Aligned_cols=81  Identities=14%  Similarity=0.130  Sum_probs=56.6

Q ss_pred             CCCCeEEEECCCccHHHHHHHhc---CCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhh-
Q 009871          334 VAGKKVLELGCGCGGICSMVAAG---SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEE-  409 (523)
Q Consensus       334 ~~~~~VLElG~G~G~l~~~~a~~---~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~-  409 (523)
                      ++|+.+|=-|++.| ++..++..   .+.+|+++|.+++.++.+.+.+...+     .++.+...|..+.+....+... 
T Consensus         3 L~gK~alITGas~G-IG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g-----~~~~~~~~Dv~~~~~v~~~~~~~   76 (260)
T d1zema1           3 FNGKVCLVTGAGGN-IGLATALRLAEEGTAIALLDMNREALEKAEASVREKG-----VEARSYVCDVTSEEAVIGTVDSV   76 (260)
T ss_dssp             TTTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTT-----SCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC-----CcEEEEEccCCCHHHHHHHHHHH
Confidence            58999999999887 77665543   23579999999999988877776543     3466777888776544333110 


Q ss_pred             --cCCCccEEEEc
Q 009871          410 --NNEGFEVILGT  420 (523)
Q Consensus       410 --~~~~fD~Ii~~  420 (523)
                        .-+..|++|.+
T Consensus        77 ~~~~g~iDilVnn   89 (260)
T d1zema1          77 VRDFGKIDFLFNN   89 (260)
T ss_dssp             HHHHSCCCEEEEC
T ss_pred             HHHhCCCCeehhh
Confidence              12579999955

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=86.45  E-value=0.43  Score=39.14  Aligned_cols=91  Identities=21%  Similarity=0.146  Sum_probs=53.6

Q ss_pred             CCCeEEEECCCccHHHHHH-HhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhcCCC
Q 009871          335 AGKKVLELGCGCGGICSMV-AAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEENNEG  413 (523)
Q Consensus       335 ~~~~VLElG~G~G~l~~~~-a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~~~~  413 (523)
                      +..+|+=||+|.-++..+. |....+.|++.|.+++.++.++.-...+        +...   ..+.+.+..  .  -..
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~~--------~~~~---~~~~~~l~~--~--~~~   95 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSR--------VELL---YSNSAEIET--A--VAE   95 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGG--------SEEE---ECCHHHHHH--H--HHT
T ss_pred             CCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhccc--------ceee---hhhhhhHHH--h--hcc
Confidence            5679999999986555443 3445678999999999988877544332        2221   111111111  1  136


Q ss_pred             ccEEEEccccCCCCChHHHHHHHHHHh
Q 009871          414 FEVILGTDVSYIPEAILPLFATAKELT  440 (523)
Q Consensus       414 fD~Ii~~d~~y~~~~~~~l~~~l~~ll  440 (523)
                      .|+||++-.+-......-+-+.+-+.+
T Consensus        96 aDivI~aalipG~~aP~lIt~~mv~~M  122 (168)
T d1pjca1          96 ADLLIGAVLVPGRRAPILVPASLVEQM  122 (168)
T ss_dssp             CSEEEECCCCTTSSCCCCBCHHHHTTS
T ss_pred             CcEEEEeeecCCcccCeeecHHHHhhc
Confidence            899999865544443333334444444

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=86.26  E-value=0.71  Score=41.00  Aligned_cols=84  Identities=14%  Similarity=0.083  Sum_probs=59.8

Q ss_pred             CCCCeEEEECCCccHHHHHHHhc---CCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhh-
Q 009871          334 VAGKKVLELGCGCGGICSMVAAG---SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEE-  409 (523)
Q Consensus       334 ~~~~~VLElG~G~G~l~~~~a~~---~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~-  409 (523)
                      ++||.+|=-|++.| ++..++..   .+.+|+++|.+++.++.+...+...+..  ..++.+...|..+.+..+.+... 
T Consensus         3 l~gKvalVTGas~G-IG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~~~~--~~~~~~~~~Dvt~~~~v~~~~~~~   79 (264)
T d1spxa_           3 FAEKVAIITGSSNG-IGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVS--EQNVNSVVADVTTDAGQDEILSTT   79 (264)
T ss_dssp             TTTCEEEETTTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCC--GGGEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCCEEEEeCcCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCC--cCceEEEEccCCCHHHHHHHHHHH
Confidence            58899999999987 77766653   2358999999999998888877765543  24577788888876554433211 


Q ss_pred             --cCCCccEEEEc
Q 009871          410 --NNEGFEVILGT  420 (523)
Q Consensus       410 --~~~~fD~Ii~~  420 (523)
                        .-++.|++|.+
T Consensus        80 ~~~~g~iDilvnn   92 (264)
T d1spxa_          80 LGKFGKLDILVNN   92 (264)
T ss_dssp             HHHHSCCCEEEEC
T ss_pred             HHHhCCCCEeecc
Confidence              12589999865

>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HaeIII
species: Haemophilus aegyptius [TaxId: 197575]

Probab=86.23  E-value=0.82  Score=41.51  Aligned_cols=66  Identities=11%  Similarity=0.090  Sum_probs=50.4

Q ss_pred             CeEEEECCCccccHHHHHhhCCCCE-EEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871           77 KDVLEVGCGAGNTIFPLIAAYPDVF-VYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM  152 (523)
Q Consensus        77 ~~iLDiGcG~G~~~~~l~~~~~~~~-v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~  152 (523)
                      .+|||+=||.|.+...|.+.  +.+ |.++|+++.+++..+.+..     -..+++|+.+++... +  ..+|+++.
T Consensus         1 mk~~~lF~G~Gg~~~gl~~a--G~~~~~a~e~d~~a~~~~~~N~~-----~~~~~~Di~~~~~~~-~--~~~dll~~   67 (324)
T d1dcta_           1 MNLISLFSGAGGLDLGFQKA--GFRIICANEYDKSIWKTYESNHS-----AKLIKGDISKISSDE-F--PKCDGIIG   67 (324)
T ss_dssp             CEEEEESCSSCHHHHHHHHH--TCEEEEEEECCHHHHHHHHHHCC-----SEEEESCTTTSCGGG-S--CCCSEEEE
T ss_pred             CeEEEeCcCcCHHHHHHHHC--CCEEEEEEeCCHHHHHHHHHHCC-----CCCccCChhhCCHhH-c--ccccEEee
Confidence            37999999999999888877  344 5599999999998887742     256789998764321 2  35899998

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=86.19  E-value=1.5  Score=38.70  Aligned_cols=82  Identities=11%  Similarity=0.082  Sum_probs=56.8

Q ss_pred             CCCCeEEEECCCccHHHHHHHhc---CCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhh----
Q 009871          334 VAGKKVLELGCGCGGICSMVAAG---SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAI----  406 (523)
Q Consensus       334 ~~~~~VLElG~G~G~l~~~~a~~---~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~----  406 (523)
                      .+||+||=.|+..| ++..++..   .+.+|+++|.+++-++.+.+.+...+.     .+.+...|..+.+..+.+    
T Consensus         4 L~gK~alITGas~G-IG~aia~~la~~G~~V~i~~r~~~~l~~~~~~~~~~~~-----~~~~~~~D~s~~~~~~~~~~~~   77 (258)
T d1ae1a_           4 LKGTTALVTGGSKG-IGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGL-----NVEGSVCDLLSRTERDKLMQTV   77 (258)
T ss_dssp             CTTCEEEEESCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-----CEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-----CceEEEeecCCHHHHHHHHHHH
Confidence            48999999999887 77666543   345899999999888877776666443     355667788776554333    


Q ss_pred             hhhcCCCccEEEEcc
Q 009871          407 KEENNEGFEVILGTD  421 (523)
Q Consensus       407 ~~~~~~~fD~Ii~~d  421 (523)
                      .....+..|+++.+-
T Consensus        78 ~~~~~g~idilinna   92 (258)
T d1ae1a_          78 AHVFDGKLNILVNNA   92 (258)
T ss_dssp             HHHTTSCCCEEEECC
T ss_pred             HHHhCCCcEEEeccc
Confidence            223345789988653

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=86.16  E-value=1.6  Score=36.02  Aligned_cols=103  Identities=14%  Similarity=0.173  Sum_probs=63.6

Q ss_pred             cCCCCCCCCeEEEECCCccHHHHH---HHhcCCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchh
Q 009871          329 RNPTIVAGKKVLELGCGCGGICSM---VAAGSADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEA  405 (523)
Q Consensus       329 ~~~~~~~~~~VLElG~G~G~l~~~---~a~~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~  405 (523)
                      +.....+|.+||=.|+|.| ++.+   +++..+.+|++++.+++-++.++..    +..      .+  .+-.+.+..+.
T Consensus        23 ~~~~v~~G~~VlV~ga~gg-vG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~----Ga~------~v--i~~~~~~~~~~   89 (182)
T d1v3va2          23 EVCGVKGGETVLVSAAAGA-VGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQI----GFD------AA--FNYKTVNSLEE   89 (182)
T ss_dssp             TTTCCCSSCEEEESSTTSH-HHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT----TCS------EE--EETTSCSCHHH
T ss_pred             HHhCCCCCCEEEEEeCCCc-hhHHHHHHHHccCCEEEEeCCCHHHHHHHHhh----hhh------hh--cccccccHHHH
Confidence            4456678999998898765 4444   4455567999999998877776652    221      11  22233322222


Q ss_pred             hh-hhcCCCccEEEEccccCCCCChHHHHHHHHHHhhccCCCCCCCCCcEEEEEEe
Q 009871          406 IK-EENNEGFEVILGTDVSYIPEAILPLFATAKELTASSNKSLREDQQPAFILCHI  460 (523)
Q Consensus       406 ~~-~~~~~~fD~Ii~~d~~y~~~~~~~l~~~l~~ll~~~~~~~~~~~~g~~~l~~~  460 (523)
                      .. ......+|+|+-+      -. .+.++....++         +++|.++++..
T Consensus        90 ~~~~~~~~Gvd~v~D~------vG-~~~~~~~~~~l---------~~~G~~v~~G~  129 (182)
T d1v3va2          90 ALKKASPDGYDCYFDN------VG-GEFLNTVLSQM---------KDFGKIAICGA  129 (182)
T ss_dssp             HHHHHCTTCEEEEEES------SC-HHHHHHHGGGE---------EEEEEEEECCC
T ss_pred             HHHHhhcCCCceeEEe------cC-chhhhhhhhhc---------cCCCeEEeecc
Confidence            22 2345679998864      22 34677777788         56888887653

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.99  E-value=1.6  Score=38.11  Aligned_cols=85  Identities=22%  Similarity=0.206  Sum_probs=60.0

Q ss_pred             CCCCeEEEECCCccHHHHHHHhc---CCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhh--
Q 009871          334 VAGKKVLELGCGCGGICSMVAAG---SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKE--  408 (523)
Q Consensus       334 ~~~~~VLElG~G~G~l~~~~a~~---~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~--  408 (523)
                      ..|+.||=-|++.| +|..++..   .+.+|+++|.+++-++.+...+...+     .++.....|..+.+....+..  
T Consensus         5 l~Gkv~lITGas~G-IG~~ia~~la~~G~~V~l~~r~~~~l~~~~~~~~~~~-----~~~~~~~~Dvs~~~~v~~~~~~i   78 (244)
T d1yb1a_           5 VTGEIVLITGAGHG-IGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLG-----AKVHTFVVDCSNREDIYSSAKKV   78 (244)
T ss_dssp             CTTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-----CCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC-----CcEEEEEeeCCCHHHHHHHHHHH
Confidence            58999999999998 77766553   24589999999999988887776533     356777788887655433221  


Q ss_pred             -hcCCCccEEEEccccC
Q 009871          409 -ENNEGFEVILGTDVSY  424 (523)
Q Consensus       409 -~~~~~fD~Ii~~d~~y  424 (523)
                       -..+..|+++.+--+.
T Consensus        79 ~~~~g~idilinnag~~   95 (244)
T d1yb1a_          79 KAEIGDVSILVNNAGVV   95 (244)
T ss_dssp             HHHTCCCSEEEECCCCC
T ss_pred             HHHcCCCceeEeecccc
Confidence             1245799988664433

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=85.93  E-value=0.5  Score=39.14  Aligned_cols=48  Identities=15%  Similarity=-0.013  Sum_probs=38.5

Q ss_pred             cCCCCCeEEEECCCc-cccHHHHHhhCCCCEEEEEeCCHHHHHHHHhcc
Q 009871           72 SGAGRKDVLEVGCGA-GNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHK  119 (523)
Q Consensus        72 ~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~  119 (523)
                      ...++.+||=+|||. |..+..+++.....+|+++|.+++-++.|++..
T Consensus        24 ~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lG   72 (174)
T d1jqba2          24 DIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYG   72 (174)
T ss_dssp             TCCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHT
T ss_pred             CCCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhC
Confidence            346788899999997 777888888752236999999999999998753

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=85.35  E-value=1.6  Score=38.26  Aligned_cols=84  Identities=13%  Similarity=0.146  Sum_probs=58.6

Q ss_pred             CCCCeEEEECCCccHHHHHHHhc---CCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhh--
Q 009871          334 VAGKKVLELGCGCGGICSMVAAG---SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKE--  408 (523)
Q Consensus       334 ~~~~~VLElG~G~G~l~~~~a~~---~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~--  408 (523)
                      +++|.+|=-|++.| ++..++..   .+.+|+++|.+++.++.+...+...+     .++.....|..+.+....+..  
T Consensus         8 lenKvalITGas~G-IG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~g-----~~~~~~~~Dvt~~~~v~~~~~~~   81 (251)
T d2c07a1           8 GENKVALVTGAGRG-IGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFG-----YESSGYAGDVSKKEEISEVINKI   81 (251)
T ss_dssp             CSSCEEEEESTTSH-HHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTT-----CCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCH-HHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcC-----CcEEEEEccCCCHHHHHHHHHHH
Confidence            47899999999887 87776654   23589999999998888877776543     346667778877654433311  


Q ss_pred             -hcCCCccEEEEcccc
Q 009871          409 -ENNEGFEVILGTDVS  423 (523)
Q Consensus       409 -~~~~~fD~Ii~~d~~  423 (523)
                       -..++.|++|.+--+
T Consensus        82 ~~~~g~iDilvnnag~   97 (251)
T d2c07a1          82 LTEHKNVDILVNNAGI   97 (251)
T ss_dssp             HHHCSCCCEEEECCCC
T ss_pred             HHhcCCceeeeecccc
Confidence             123689999976433

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=85.26  E-value=0.13  Score=40.64  Aligned_cols=62  Identities=13%  Similarity=0.134  Sum_probs=39.5

Q ss_pred             CccccHHHHHhhC--CCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871           85 GAGNTIFPLIAAY--PDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM  152 (523)
Q Consensus        85 G~G~~~~~l~~~~--~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~  152 (523)
                      |.|.++..+++..  .+..|+.+|.+++.++.++...      ...+.+|..+.+......-...|.|++
T Consensus         7 G~G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~~~------~~~~~gd~~~~~~l~~a~i~~a~~vi~   70 (134)
T d2hmva1           7 GLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYA------THAVIANATEENELLSLGIRNFEYVIV   70 (134)
T ss_dssp             CCSHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTTTC------SEEEECCTTCTTHHHHHTGGGCSEEEE
T ss_pred             CCCHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHHhC------CcceeeecccchhhhccCCccccEEEE
Confidence            4466666665541  2667999999999998886542      356778987653211111235787766

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=85.17  E-value=1.3  Score=38.88  Aligned_cols=82  Identities=16%  Similarity=0.240  Sum_probs=57.1

Q ss_pred             CCCCeEEEECCCccHHHHHHHhc---CCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhh-
Q 009871          334 VAGKKVLELGCGCGGICSMVAAG---SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEE-  409 (523)
Q Consensus       334 ~~~~~VLElG~G~G~l~~~~a~~---~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~-  409 (523)
                      ++|+.+|=-|++.| ++..+|..   .+.+|+++|.+++.++.+.+.+...+     .++.....|..+.+....+... 
T Consensus         9 L~gK~alITGas~G-IG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l~~~g-----~~~~~~~~Dvs~~~~~~~~~~~~   82 (255)
T d1fmca_           9 LDGKCAIITGAGAG-IGKEIAITFATAGASVVVSDINADAANHVVDEIQQLG-----GQAFACRCDITSEQELSALADFA   82 (255)
T ss_dssp             CTTCEEEETTTTSH-HHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTT-----CCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcC-----CcEEEEEccCCCHHHHHHHHHHH
Confidence            48999999999887 77766653   24589999999988888877776543     3456667788776544332110 


Q ss_pred             --cCCCccEEEEcc
Q 009871          410 --NNEGFEVILGTD  421 (523)
Q Consensus       410 --~~~~fD~Ii~~d  421 (523)
                        .-+..|++|.+-
T Consensus        83 ~~~~g~iDilvnnA   96 (255)
T d1fmca_          83 ISKLGKVDILVNNA   96 (255)
T ss_dssp             HHHHSSCCEEEECC
T ss_pred             HHHcCCCCEeeeCC
Confidence              125799999763

>d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RPA4359-like
domain: Hypothetical protein RPA4359
species: Rhodopseudomonas palustris [TaxId: 1076]

Probab=84.47  E-value=1.1  Score=41.78  Aligned_cols=43  Identities=12%  Similarity=0.096  Sum_probs=29.2

Q ss_pred             CCCeEEEECCCccHHHHHHHhc--------CCCEEEEEcCChHHHHHHHHH
Q 009871          335 AGKKVLELGCGCGGICSMVAAG--------SADLVVATDGDSIALDLLAQN  377 (523)
Q Consensus       335 ~~~~VLElG~G~G~l~~~~a~~--------~~~~V~~~D~~~~~l~~~~~n  377 (523)
                      +..+|+|+|+|+|.++.-++..        -..+++.++.|+.+.+.-+.+
T Consensus        79 ~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~  129 (365)
T d1zkda1          79 QTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTL  129 (365)
T ss_dssp             SSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHH
T ss_pred             ccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHHH
Confidence            4458999999999776544332        123689999998655544443

>d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: FkbM-like
domain: Methyltransferase FkbM
species: Methylobacillus flagellatus [TaxId: 405]

Probab=84.05  E-value=0.51  Score=44.71  Aligned_cols=50  Identities=10%  Similarity=0.109  Sum_probs=41.1

Q ss_pred             hcCCCCCeEEEECCCccccHHHHHhhCC--CCEEEEEeCCHHHHHHHHhccc
Q 009871           71 FSGAGRKDVLEVGCGAGNTIFPLIAAYP--DVFVYACDFSPRAVNLVMTHKD  120 (523)
Q Consensus        71 ~~~~~~~~iLDiGcG~G~~~~~l~~~~~--~~~v~gvD~S~~~l~~a~~~~~  120 (523)
                      +...++..++|||+-.|..+..++...+  ..+|+++|+++...+..+++..
T Consensus       208 ~~l~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~  259 (395)
T d2py6a1         208 LRFSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLR  259 (395)
T ss_dssp             CCCCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHH
T ss_pred             cCcCCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHH
Confidence            3346788999999999999888776643  3689999999999999988653

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=83.73  E-value=1  Score=40.01  Aligned_cols=80  Identities=13%  Similarity=0.148  Sum_probs=54.7

Q ss_pred             CCCCeEEEECCCccHHHHHHHhc---CCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhh--
Q 009871          334 VAGKKVLELGCGCGGICSMVAAG---SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKE--  408 (523)
Q Consensus       334 ~~~~~VLElG~G~G~l~~~~a~~---~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~--  408 (523)
                      ++|+.+|=-|++.| ++..+|..   .+.+|+++|.+++.++.+...+..      ...+.+...|..+.+....+..  
T Consensus         4 L~gKvalITGas~G-IG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~------~~~~~~~~~Dv~~~~~v~~~~~~~   76 (268)
T d2bgka1           4 LQDKVAIITGGAGG-IGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGS------PDVISFVHCDVTKDEDVRNLVDTT   76 (268)
T ss_dssp             TTTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCC------TTTEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcC------CCceEEEEccCCCHHHHHHHHHHH
Confidence            58999999999987 77666543   245899999999887776655432      1346667778877655443311  


Q ss_pred             -hcCCCccEEEEc
Q 009871          409 -ENNEGFEVILGT  420 (523)
Q Consensus       409 -~~~~~fD~Ii~~  420 (523)
                       -..++.|++|.+
T Consensus        77 ~~~~g~iD~lVnn   89 (268)
T d2bgka1          77 IAKHGKLDIMFGN   89 (268)
T ss_dssp             HHHHSCCCEEEEC
T ss_pred             HHHcCCcceeccc
Confidence             012589999965

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=83.53  E-value=0.61  Score=38.60  Aligned_cols=47  Identities=11%  Similarity=-0.041  Sum_probs=39.5

Q ss_pred             CCCCCeEEEECCCc-cccHHHHHhhCCCCEEEEEeCCHHHHHHHHhcc
Q 009871           73 GAGRKDVLEVGCGA-GNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHK  119 (523)
Q Consensus        73 ~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~  119 (523)
                      ..++.+||=+|||. |..+..+++......|+.+|.++.-++.|++..
T Consensus        26 v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~G   73 (174)
T d1e3ia2          26 VTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALG   73 (174)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTT
T ss_pred             CCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhC
Confidence            36788999999998 777888888764457999999999999999863

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=83.34  E-value=3.1  Score=36.44  Aligned_cols=82  Identities=11%  Similarity=0.098  Sum_probs=56.4

Q ss_pred             CCCCeEEEECCCccHHHHHHHhc---CCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhh---
Q 009871          334 VAGKKVLELGCGCGGICSMVAAG---SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIK---  407 (523)
Q Consensus       334 ~~~~~VLElG~G~G~l~~~~a~~---~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~---  407 (523)
                      .+|+.+|=-|++.| ++..++..   .+.+|+++|.+++-++.+...+...+     .++.+...|..+.+....+.   
T Consensus         6 L~GK~alITGas~G-IG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g-----~~~~~~~~Dv~~~~~v~~~~~~~   79 (259)
T d2ae2a_           6 LEGCTALVTGGSRG-IGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKG-----FKVEASVCDLSSRSERQELMNTV   79 (259)
T ss_dssp             CTTCEEEEESCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-----CEEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC-----CCceEEEeeCCCHHHHHHHHHHH
Confidence            47999999999987 77666553   23589999999988887777666543     34566677777665443331   


Q ss_pred             -hhcCCCccEEEEcc
Q 009871          408 -EENNEGFEVILGTD  421 (523)
Q Consensus       408 -~~~~~~fD~Ii~~d  421 (523)
                       .....+.|++|.+-
T Consensus        80 ~~~~~~~idilvnnA   94 (259)
T d2ae2a_          80 ANHFHGKLNILVNNA   94 (259)
T ss_dssp             HHHTTTCCCEEEECC
T ss_pred             HHHhCCCceEEEECC
Confidence             11234799999763

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=82.47  E-value=1.7  Score=38.25  Aligned_cols=82  Identities=11%  Similarity=0.080  Sum_probs=56.5

Q ss_pred             CCCCeEEEECCCccHHHHHHHhc---CCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhh---
Q 009871          334 VAGKKVLELGCGCGGICSMVAAG---SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIK---  407 (523)
Q Consensus       334 ~~~~~VLElG~G~G~l~~~~a~~---~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~---  407 (523)
                      .+|+++|=-|++.| ++..+|..   .+.+|+++|.+++-++.+...+...+     .++.....|..+.+....+.   
T Consensus         6 LkgK~alVTGas~G-IG~aiA~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~~   79 (259)
T d1xq1a_           6 LKAKTVLVTGGTKG-IGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKG-----FQVTGSVCDASLRPEREKLMQTV   79 (259)
T ss_dssp             CTTCEEEETTTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-----CCEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC-----CceEEEeccCCCHHHHHHHHHHH
Confidence            37999999999987 77665543   23589999999988887777666543     34666777777654433321   


Q ss_pred             -hhcCCCccEEEEcc
Q 009871          408 -EENNEGFEVILGTD  421 (523)
Q Consensus       408 -~~~~~~fD~Ii~~d  421 (523)
                       ....+..|+++.+-
T Consensus        80 ~~~~~g~idilvnnA   94 (259)
T d1xq1a_          80 SSMFGGKLDILINNL   94 (259)
T ss_dssp             HHHHTTCCSEEEEEC
T ss_pred             HHHhCCCcccccccc
Confidence             12246799999763

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.37  E-value=1.5  Score=38.83  Aligned_cols=89  Identities=17%  Similarity=0.131  Sum_probs=55.3

Q ss_pred             CCCCCCeEEEECCCccHHHHHHHhc---CCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhh-
Q 009871          332 TIVAGKKVLELGCGCGGICSMVAAG---SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIK-  407 (523)
Q Consensus       332 ~~~~~~~VLElG~G~G~l~~~~a~~---~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~-  407 (523)
                      ...+|+++|=-|++.| +|..+|..   .+.+|++++.+++.++.+...+.....    ..+.....|..+........ 
T Consensus        10 ~~L~GK~alITGassG-IG~aiA~~la~~G~~Vil~~r~~~~l~~~~~~~~~~~~----~~~~~~~~d~~~~~~~~~~~~   84 (269)
T d1xu9a_          10 EMLQGKKVIVTGASKG-IGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGA----ASAHYIAGTMEDMTFAEQFVA   84 (269)
T ss_dssp             GGGTTCEEEESSCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTC----SEEEEEECCTTCHHHHHHHHH
T ss_pred             cccCCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHhhhhc----ccchhhhhhhhhHHHHHHHHH
Confidence            4468999999999998 77776654   245899999999988877665443322    23444444444332222111 


Q ss_pred             --hhcCCCccEEEEccccCC
Q 009871          408 --EENNEGFEVILGTDVSYI  425 (523)
Q Consensus       408 --~~~~~~fD~Ii~~d~~y~  425 (523)
                        ....+..|+++.+-..+.
T Consensus        85 ~~~~~~g~~~~li~nag~~~  104 (269)
T d1xu9a_          85 QAGKLMGGLDMLILNHITNT  104 (269)
T ss_dssp             HHHHHHTSCSEEEECCCCCC
T ss_pred             HHHHHhCCcccccccccccc
Confidence              112357888887654443

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=81.31  E-value=1.9  Score=37.70  Aligned_cols=83  Identities=17%  Similarity=0.220  Sum_probs=54.0

Q ss_pred             CCCCeEEEECCCccHHHHHHHhc---CCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhh-
Q 009871          334 VAGKKVLELGCGCGGICSMVAAG---SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEE-  409 (523)
Q Consensus       334 ~~~~~VLElG~G~G~l~~~~a~~---~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~-  409 (523)
                      ++|+.+|=-|++.| ++..+|..   .+.+|+++|.+++.++.+...+....-    .++.....|..+.+....+... 
T Consensus         3 l~gK~~lITGas~G-IG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~g----~~~~~~~~Dv~~~~~v~~~~~~~   77 (251)
T d1vl8a_           3 LRGRVALVTGGSRG-LGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYG----VETMAFRCDVSNYEEVKKLLEAV   77 (251)
T ss_dssp             CTTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHC----CCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhC----CcEEEEEccCCCHHHHHHHHHHH
Confidence            47899999999987 77665543   235899999998877766555433211    3455667788776544333110 


Q ss_pred             --cCCCccEEEEcc
Q 009871          410 --NNEGFEVILGTD  421 (523)
Q Consensus       410 --~~~~fD~Ii~~d  421 (523)
                        .-++.|++|.+-
T Consensus        78 ~~~~g~iDiLVnnA   91 (251)
T d1vl8a_          78 KEKFGKLDTVVNAA   91 (251)
T ss_dssp             HHHHSCCCEEEECC
T ss_pred             HHHcCCCCEEEECC
Confidence              125899999664

>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HhaI
species: Haemophilus haemolyticus [TaxId: 726]

Probab=81.18  E-value=1.3  Score=40.25  Aligned_cols=68  Identities=13%  Similarity=0.098  Sum_probs=50.5

Q ss_pred             CCCeEEEECCCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871           75 GRKDVLEVGCGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM  152 (523)
Q Consensus        75 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~  152 (523)
                      .+.+|||+=||.|.+...|.+.+-. .|.++|+++.+++..+.+...      ..++|+.+.+...   -..+|+++.
T Consensus        10 ~~lrv~~lFsG~Gg~~~gl~~aG~~-~v~a~e~d~~a~~~~~~N~~~------~~~~Di~~~~~~~---~~~~Dll~g   77 (327)
T d2c7pa1          10 TGLRFIDLFAGLGGFRLALESCGAE-CVYSNEWDKYAQEVYEMNFGE------KPEGDITQVNEKT---IPDHDILCA   77 (327)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHTTCE-EEEEECCCHHHHHHHHHHHSC------CCBSCGGGSCGGG---SCCCSEEEE
T ss_pred             CCCeEEEECccccHHHHHHHHCCCe-EEEEEeCCHHHHHHHHHHCCC------CCcCchhcCchhh---cceeeeeec
Confidence            5689999999999999988877322 367799999999999887532      1257887764321   235899998

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.10  E-value=2.1  Score=37.17  Aligned_cols=78  Identities=21%  Similarity=0.299  Sum_probs=52.3

Q ss_pred             CCCCeEEEECCCccHHHHHHHhc---CCCEEEEEcCChHHHHHHHHHHHhcCCCCCCCceEEEeeecCCCCcchhhhhhc
Q 009871          334 VAGKKVLELGCGCGGICSMVAAG---SADLVVATDGDSIALDLLAQNVTANLKPPFLAKLITKRLEWGNRDHIEAIKEEN  410 (523)
Q Consensus       334 ~~~~~VLElG~G~G~l~~~~a~~---~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~v~~~~ldw~~~~~~~~~~~~~  410 (523)
                      .+|+++|=-|++.| ++..++..   .+.+|+++|.+++-++.+.+..         ..+.....|..+.+..+.+... 
T Consensus         5 L~GK~~lITGas~G-IG~aia~~la~~G~~V~~~~r~~~~l~~~~~~~---------~~~~~~~~Dv~d~~~v~~~~~~-   73 (244)
T d1pr9a_           5 LAGRRVLVTGAGKG-IGRGTVQALHATGARVVAVSRTQADLDSLVREC---------PGIEPVCVDLGDWEATERALGS-   73 (244)
T ss_dssp             CTTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS---------TTCEEEECCTTCHHHHHHHHTT-
T ss_pred             CCCCEEEEeCCCCH-HHHHHHHHHHHcCCEEEEEECCHHHHHHHHHhc---------CCCeEEEEeCCCHHHHHHHHHH-
Confidence            58999999999987 77766654   2458999999987776554322         1244556677766554443322 


Q ss_pred             CCCccEEEEccc
Q 009871          411 NEGFEVILGTDV  422 (523)
Q Consensus       411 ~~~fD~Ii~~d~  422 (523)
                      -++.|++|.+--
T Consensus        74 ~g~iDilVnnAg   85 (244)
T d1pr9a_          74 VGPVDLLVNNAA   85 (244)
T ss_dssp             CCCCCEEEECCC
T ss_pred             hCCceEEEeccc
Confidence            358999996643

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=80.43  E-value=0.42  Score=37.31  Aligned_cols=63  Identities=10%  Similarity=0.049  Sum_probs=45.3

Q ss_pred             CCccccHHHHHhhCCCCEEEEEeCCHHHHHHHHhccccCCCcEEEEEeeccCCccCCCCCCCceeEEEE
Q 009871           84 CGAGNTIFPLIAAYPDVFVYACDFSPRAVNLVMTHKDFTETRVSTFVCDLISDDLSRQISPSSIDIVTM  152 (523)
Q Consensus        84 cG~G~~~~~l~~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~  152 (523)
                      ||.|..+..+++...+..|+.+|.++..++.++..      .+.++.+|..+.+.-....-.+.+.+++
T Consensus         6 ~G~g~~g~~l~~~L~~~~i~vi~~d~~~~~~~~~~------~~~~i~Gd~~~~~~L~~a~i~~A~~vi~   68 (129)
T d2fy8a1           6 CGWSESTLECLRELRGSEVFVLAEDENVRKKVLRS------GANFVHGDPTRVSDLEKANVRGARAVIV   68 (129)
T ss_dssp             ESCCHHHHHHHHTSCGGGEEEEESCTTHHHHHHHT------TCEEEESCTTSHHHHHHTTCTTCSEEEE
T ss_pred             ECCCHHHHHHHHHHcCCCCEEEEcchHHHHHHHhc------CccccccccCCHHHHHHhhhhcCcEEEE
Confidence            56788899999987677799999999998877653      4688999987643211122345777777