Citrus Sinensis ID: 009904

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520---
MDMSDKDKFVLEKRNDNPMDYHSPNMSSDWQFSGANLANAALNLVPTGNPLGVGSSSCSSAPMVDSFNQTIWDHPTNSQSLGYCNIDAQHNASSSNALGIRKGSSASLRSCIDRPLDIGWNPASSMIKGGIFLPNAPGMFPQSLSQFPADSAFIERAARFSSFSGGNFCDMMNTFGTPEPTGLYSRGRGMMQGPQEVFAGNGLKSLSGGQSQKNEMNVAEVSKDASLSVEHGASNGSTLKNERKGESLVNSHGEAKQGVGASGGDSDEAEFSGGGGQDEPSAVEGTGGEPSAKGLSSKKRKRNGQDIEFDQAKGGQSSGEAAKDNTENQRKGDHKPSSTGNKSAGKQGKQGSQTSDPPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRLDFNIEELLAKDVLQSRAGPSSTLGFSPDMPLVYPPVHQSQAGLMHGALPGMGNPSDILRRTINSQLTPMTGGFKEPSQVSFYPQ
cccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccc
ccccccccccEEEcccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccHHHccccccccccccHccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHcHHHHHccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccHcccccc
MDMSDKDKFVLEkrndnpmdyhspnmssdwqfsGANLANAALnlvptgnplgvgssscssapmvdsfnqtiwdhptnsqslgycnidaqhnasssnalgirkgssaslrscidrpldigwnpassmikggiflpnapgmfpqslsqfpadSAFIERAArfssfsggnfcdmmntfgtpeptglysrgrgmmqgpqevfagnglkslsggqsqknemnvaevskdaslsvehgasngstlknerkgeslvnshgeakqgvgasggdsdeaefsggggqdepsavegtggepsakglsskkrkrngqdiefdqakggqssgeaakdntenqrkgdhkpsstgnksagkqgkqgsqtsdppkeeYIHVRArrgqatnshsLAERVRREKISERMKFLQDLvpgcskvtgkAVMLDEIINYVQSLQRQVEFLSMKLatvnprldFNIEELLAKdvlqsragpsstlgfspdmplvyppvhqsqaglmhgalpgmgnpsdILRRTInsqltpmtggfkepsqvsfypq
MDMSDKDKFVLEkrndnpmdyhSPNMSSDWQFSGANLANAALNLVPTGNPLGVGSSSCSSAPMVDSFNQTIWDHPTNSQSLGYCNIDAQHNASSSNALGIRKGSSASLRSCIDRPLDIGWNPASSMIKGGIFLPNAPGMFPQSLSQFPADSAFIERAARFSSFSGGNFCDMMNTFGTPEPTGLYSRGRGMMQGPQEVFAGNGLKSLSGGQSQKNEMNVAEVSKDASLSVehgasngstlknerKGESLVNSHGEAKQGVGASGGDSDEAEFSGGGGQdepsavegtggepsakglsskkrkrnGQDIefdqakggqssgeaakdntenqrkgdhkpsstgnksagkqgkqgsqtsdppKEEYIHVrarrgqatnshslaeRVRREKISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRLDFNIEELLAKDVLQSRAGPSSTLGFSPDMPLVYPPVHQSQAGLMHGALPGMGNPSDILRRTINSQltpmtggfkepsqvsfypq
MDMSDKDKFVLEKRNDNPMDYHSPNMSSDWQFSGanlanaalnlVPTGNPLGVGSSSCSSAPMVDSFNQTIWDHPTNSQSLGYCNIDAQHNASSSNALGIRKGSSASLRSCIDRPLDIGWNPASSMIKGGIFLPNAPGMFPQSLSQFPADSAFIERAARFSSFSGGNFCDMMNTFGTPEPTGLYSRGRGMMQGPQEVFAGNGLKSLSGGQSQKNEMNVAEVSKDASLSVEHGASNGSTLKNERKGESLVNSHGEAKQGVGASGGDSDEAEFSGGGGQDEPSAVEGTGGEPSAKGLSSKKRKRNGQDIEFDQAKGGQSSGEAAKDNTENQRKGDHKPSSTGNKSAGKQGKQGSQTSDPPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRLDFNIEELLAKDVLQSRAGPSSTLGFSPDMPLVYPPVHQSQAGLMHGALPGMGNPSDILRRTINSQLTPMTGGFKEPSQVSFYPQ
*********************************GANLANAALNLVPT******************SFNQTIWDHPTNSQSLGYCNID*********************RSCIDRPLDIGWNPASSMIKGGIFLPNAPGMFPQSLSQFPADSAFIERAARFSSFSGGNFCDMMNTFG**********************************************************************************************************************************************************************************************************************MKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRLDFNIEELLAKDVL***********************************************************************
******************************************************************FNQTIWD*P*****************************************************************************FI**************************************************************************************************************************************************************************************************************************************EKISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVN***************************************************************************************
MDMSDKDKFVLEKRNDNPMDYHSPNMSSDWQFSGANLANAALNLVPTGNPLGVGSSSCSSAPMVDSFNQTIWDHPTNSQSLGYCNIDAQHNASSSNALGIRKGSSASLRSCIDRPLDIGWNPASSMIKGGIFLPNAPGMFPQSLSQFPADSAFIERAARFSSFSGGNFCDMMNTFGTPEPTGLYSRGRGMMQGPQEVFAGNGLKSLSGGQSQKNEMNVAEVSKDASLSVEHGASNGSTLKNERKG**********************************************************GQDIEFDQ***********************************************KEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRLDFNIEELLAKDVLQSRAGPSSTLGFSPDMPLVYPPVHQSQAGLMHGALPGMGNPSDILRRTINSQLTPMTGGFK**********
*******KFVLEKRNDNPMDYHSPNMSSDWQFSGANLANAALNLVPTGNPL******C*SAPMVDSFNQTIWDHPTNSQSLGYCNIDAQHNASSSNALGIRKGSSASLRSCIDRPLDIGWNPASSMIKGGIFLPNAPGMFPQSLSQFPADSAFIERAARFSSFSGGNFCDMMNTFGTPEPTGLYSRGRGMMQGPQEVFAGN***S*********************************************************************************************************************************************************KEEYIHVRARRGQ***SHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRLDFNIEELLAKDVLQSRAGPSSTLGFSPDMPLVYPPVHQSQAGLMHGALPGMGNPSDILRRTINSQLTPMTGGFKEPSQV*****
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MDMSDKDKFVLEKRNDNPMDYHSPNMSSDWQFSGANLANAALNLVPTGNPLGVGSSSCSSAPMVDSFNQTIWDHPTNSQSLGYCNIDAQHNASSSNALGIRKGSSASLRSCIDRPLDIGWNPASSMIKGGIFLPNAPGMFPQSLSQFPADSAFIERAARFSSFSGGNFCDMMNTFGTPEPTGLYSRGRGMMQGPQEVFAGNGLKSLSGGQSQKNEMNVAEVSKDASLSVEHGASNGSTLKNERKGESLVNSHGEAKQGVGASGGDSDEAEFSGGGGQDEPSAVEGTGGEPSAKGLSSKKRKRNGQDIEFDQAKGGQSSGEAAKDNTENQRKGDHKPSSTGNKSAGKQGKQGSQTSDPPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRLDFNIEELLAKDVLQSRAGPSSTLGFSPDMPLVYPPVHQSQAGLMHGALPGMGNPSDILRRTINSQLTPMTGGFKEPSQVSFYPQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query523 2.2.26 [Sep-21-2011]
Q9CAA9486 Transcription factor bHLH yes no 0.831 0.895 0.510 1e-116
Q9C670390 Transcription factor bHLH no no 0.661 0.887 0.380 8e-69
Q6NKN9366 Transcription factor bHLH no no 0.260 0.371 0.661 3e-47
Q9SRT2456 Transcription factor bHLH no no 0.304 0.348 0.581 8e-45
Q8GY61335 Transcription factor bHLH no no 0.216 0.337 0.709 2e-41
Q9LK48371 Transcription factor bHLH no no 0.416 0.587 0.429 5e-41
Q0JXE7343 Transcription factor BPE no no 0.353 0.539 0.455 6e-37
Q9ZPW3337 Transcription factor bHLH no no 0.309 0.480 0.505 4e-36
Q93W88286 Transcription factor bHLH no no 0.281 0.513 0.559 5e-36
Q93VJ4304 Transcription factor BEE no no 0.239 0.411 0.576 5e-35
>sp|Q9CAA9|BH049_ARATH Transcription factor bHLH49 OS=Arabidopsis thaliana GN=BHLH49 PE=2 SV=1 Back     alignment and function desciption
 Score =  419 bits (1076), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 265/519 (51%), Positives = 319/519 (61%), Gaps = 84/519 (16%)

Query: 1   MDMSDKDKFVLEKRNDNPMDYHSPNM-SSDWQFSGANLANAALNLVPTGNPLGVGSSSCS 59
           MD+S KD+F  EKRN  P +Y S N  S DW+          ++  P+ N +  G +SCS
Sbjct: 1   MDLSAKDEFSAEKRN--PDNYDSVNNPSGDWR----------VDSYPSENLISAGPASCS 48

Query: 60  SAPMVDSFNQTIWDHPTNSQSLGYCNIDAQHNASSSNALGIRKGSSASLRSCIDRPLDIG 119
            + M+DSF QT+W  PT+ Q++GY   +   NASSS           S R  IDR L++G
Sbjct: 49  PSQMMDSFGQTLWYDPTSVQAVGYAGFNG-GNASSS-----------SFRGSIDRSLEMG 96

Query: 120 WN-PASSMIKG-GIFLPNAPGMFPQSLSQFPADSAFIERAARFSSFSGGNFCDMMNT-FG 176
           WN P     KG G+FLPNA    P S++QFPADS FIERAARFS FSGGNF DM+N   G
Sbjct: 97  WNLPNLLPPKGNGLFLPNASSFLPPSMAQFPADSGFIERAARFSLFSGGNFSDMVNQPLG 156

Query: 177 TPEPTGLYSRGRGMMQGPQEVFAGNGLKSLSGGQSQKNEMNVAEVSKDASLSVEHGASNG 236
             E  GL+ +G G MQG                Q Q NE+NV E   D S++V+      
Sbjct: 157 NSEAIGLFLQGGGTMQG----------------QCQSNELNVGEPHNDVSVAVK------ 194

Query: 237 STLKNERKGESLVNSHGEAKQGVGASGGDSDEAEFSGGGGQDEPSAVEGTGGEPSAKGLS 296
                    ES V S  +AK  V  SG  S++ + SGG GQ         G E S+   +
Sbjct: 195 ---------ESTVRSSEQAKPNVPGSGNVSEDTQSSGGNGQ--------KGRETSS---N 234

Query: 297 SKKRKRNGQ-DIEFDQAKGGQSSGEAAKDNTENQRKGDHKPSSTGNKS-AGKQGKQGSQT 354
           +KKRKRNGQ + E  Q+   Q S E   +N + +R  +  P+S G KS +GKQ  QG Q+
Sbjct: 235 TKKRKRNGQKNSEAAQSHRSQQSEEEPDNNGDEKRNDEQSPNSPGKKSNSGKQ--QGKQS 292

Query: 355 SDPPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDEI 414
           SDPPK+ YIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGC+KVTGKAVMLDEI
Sbjct: 293 SDPPKDGYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCNKVTGKAVMLDEI 352

Query: 415 INYVQSLQRQVEFLSMKLATVNPRLDFNIEELLAKDVLQSRAGPSSTLGFSPDMPLVYPP 474
           INYVQSLQRQVEFLSMKLATVNP++DFN+E LLAKD LQ RAG SST  F P+M + YPP
Sbjct: 353 INYVQSLQRQVEFLSMKLATVNPQMDFNLEGLLAKDALQLRAGSSSTTPFPPNMSMAYPP 412

Query: 475 VHQSQAGLMHGALPGMGNPSDILRRTINSQLTPMTGGFK 513
           +     G M   L  +G       RTI S L+PM GGFK
Sbjct: 413 LPH---GFMQQTLSSIG-------RTITSPLSPMNGGFK 441

Arabidopsis thaliana (taxid: 3702)
>sp|Q9C670|BH076_ARATH Transcription factor bHLH76 OS=Arabidopsis thaliana GN=BHLH76 PE=2 SV=1 Back     alignment and function description
>sp|Q6NKN9|BH074_ARATH Transcription factor bHLH74 OS=Arabidopsis thaliana GN=BHLH74 PE=2 SV=1 Back     alignment and function description
>sp|Q9SRT2|BH062_ARATH Transcription factor bHLH62 OS=Arabidopsis thaliana GN=BHLH62 PE=2 SV=1 Back     alignment and function description
>sp|Q8GY61|BH063_ARATH Transcription factor bHLH63 OS=Arabidopsis thaliana GN=BHLH63 PE=2 SV=1 Back     alignment and function description
>sp|Q9LK48|BH077_ARATH Transcription factor bHLH77 OS=Arabidopsis thaliana GN=BHLH77 PE=2 SV=1 Back     alignment and function description
>sp|Q0JXE7|BPE_ARATH Transcription factor BPE OS=Arabidopsis thaliana GN=BPE PE=2 SV=1 Back     alignment and function description
>sp|Q9ZPW3|BH064_ARATH Transcription factor bHLH64 OS=Arabidopsis thaliana GN=BHLH64 PE=2 SV=3 Back     alignment and function description
>sp|Q93W88|BH137_ARATH Transcription factor bHLH137 OS=Arabidopsis thaliana GN=BHLH137 PE=2 SV=1 Back     alignment and function description
>sp|Q93VJ4|BEE2_ARATH Transcription factor BEE 2 OS=Arabidopsis thaliana GN=BEE2 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query523
255547017566 conserved hypothetical protein [Ricinus 0.988 0.913 0.706 0.0
224108619562 predicted protein [Populus trichocarpa] 0.984 0.916 0.702 0.0
359473485609 PREDICTED: LOW QUALITY PROTEIN: transcri 0.977 0.839 0.698 0.0
297738215496 unnamed protein product [Vitis vinifera] 0.858 0.905 0.629 1e-168
356502674551 PREDICTED: transcription factor bHLH49-l 0.950 0.901 0.592 1e-154
449434704561 PREDICTED: transcription factor bHLH49-l 0.977 0.910 0.556 1e-148
449493518517 PREDICTED: transcription factor bHLH49-l 0.892 0.903 0.522 1e-136
356495611414 PREDICTED: transcription factor bHLH49-l 0.709 0.896 0.657 1e-135
449518045533 PREDICTED: transcription factor bHLH49-l 0.923 0.906 0.547 1e-130
449463525533 PREDICTED: transcription factor bHLH49-l 0.923 0.906 0.545 1e-129
>gi|255547017|ref|XP_002514566.1| conserved hypothetical protein [Ricinus communis] gi|223546170|gb|EEF47672.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score =  742 bits (1915), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/525 (70%), Positives = 424/525 (80%), Gaps = 8/525 (1%)

Query: 1   MDMSDKDKFVLEKRNDNPMDYHSP-NMSSDWQFSGANLANAALNLVPTGNPLGV------ 53
           MDMSD DK  LEKR DNP++YHSP NM+SDW+F  +N+ N +L LVPT N + V      
Sbjct: 1   MDMSDMDKLELEKRGDNPINYHSPANMTSDWRFGSSNITNTSLGLVPTDNQMPVCRGDLL 60

Query: 54  GSSSCSSAPMVDSFNQTIWDHPTNSQSLGYCNIDAQHNASSSNALGIRKGSSASLRSCID 113
           G+SSCS+A MVDSF   +WDH TNS +LG+C+I+ Q++ S+SN +G RK    SLR   D
Sbjct: 61  GASSCSTASMVDSFGPGLWDHSTNSLNLGFCDINVQNHPSTSNTIGHRKSGPTSLRVGTD 120

Query: 114 RPLDIGWNPASSMIKGGIFLPNAPGMFPQSLSQFPADSAFIERAARFSSFSGGNFCDMMN 173
           + L +GWNP SSM+KGGIFLP+APG+ PQSLSQFPADSAFIERAARFS F+GGNF DMMN
Sbjct: 121 KALQMGWNPPSSMLKGGIFLPSAPGVLPQSLSQFPADSAFIERAARFSCFNGGNFSDMMN 180

Query: 174 TFGTPEPTGLYSRGRGMMQGPQEVFAGNGLKSLSGGQSQKNEMNVAEVSKDASLSVEHGA 233
            FG PE  GLYSR  GMMQGPQEVFA +GLK+++GGQ Q N   V E SKDAS+S+EH A
Sbjct: 181 PFGIPESMGLYSRSGGMMQGPQEVFAASGLKTVTGGQGQNNVTIVGETSKDASMSIEHVA 240

Query: 234 SNGSTLKNERKGESLVNSHGEAKQGVGASGGDSDEAEFSGGGGQDEPSAVEGTGGEPSAK 293
             G  LKNERK +SLV S+ EAKQG G SG +S+EAEFSGGGGQ+E S +EG G E SAK
Sbjct: 241 IEGP-LKNERKSDSLVRSNDEAKQGAGGSGDESEEAEFSGGGGQEEASTLEGNGMELSAK 299

Query: 294 GLSSKKRKRNGQDIEFDQAKGGQSSGEAAKDNTENQRKGDHKPSSTGNKSAGKQGKQGSQ 353
            L  KKRKRNGQDIE DQAKG   S EAAKDN E Q+KGD  P+ST NK++GKQGKQGSQ
Sbjct: 300 SLGLKKRKRNGQDIELDQAKGNLQSVEAAKDNVEAQQKGDQTPTSTPNKTSGKQGKQGSQ 359

Query: 354 TSDPPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDE 413
            SDPPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDE
Sbjct: 360 ASDPPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDE 419

Query: 414 IINYVQSLQRQVEFLSMKLATVNPRLDFNIEELLAKDVLQSRAGPSSTLGFSPDMPLVYP 473
           IINYVQSLQRQVEFLSMKLATVNPRLDFNIE LLAKD+L SRA PSSTL FSPDM + YP
Sbjct: 420 IINYVQSLQRQVEFLSMKLATVNPRLDFNIEGLLAKDILHSRAVPSSTLAFSPDMIMAYP 479

Query: 474 PVHQSQAGLMHGALPGMGNPSDILRRTINSQLTPMTGGFKEPSQV 518
           P + SQ GL+  + PGM + SD+LRRTI+SQLTP++G FKEP+Q+
Sbjct: 480 PFNTSQPGLIQASFPGMESHSDVLRRTISSQLTPLSGVFKEPTQL 524

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224108619|ref|XP_002314910.1| predicted protein [Populus trichocarpa] gi|222863950|gb|EEF01081.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359473485|ref|XP_003631305.1| PREDICTED: LOW QUALITY PROTEIN: transcription factor bHLH49-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|297738215|emb|CBI27416.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356502674|ref|XP_003520142.1| PREDICTED: transcription factor bHLH49-like [Glycine max] Back     alignment and taxonomy information
>gi|449434704|ref|XP_004135136.1| PREDICTED: transcription factor bHLH49-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449493518|ref|XP_004159328.1| PREDICTED: transcription factor bHLH49-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356495611|ref|XP_003516668.1| PREDICTED: transcription factor bHLH49-like [Glycine max] Back     alignment and taxonomy information
>gi|449518045|ref|XP_004166054.1| PREDICTED: transcription factor bHLH49-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449463525|ref|XP_004149484.1| PREDICTED: transcription factor bHLH49-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query523
TAIR|locus:2205420486 AT1G68920 [Arabidopsis thalian 0.468 0.504 0.6 5e-85
UNIPROTKB|Q69JJ6428 OSJNBa0026C08.22 "TA1 protein- 0.478 0.584 0.570 9.2e-68
UNIPROTKB|Q5VR96437 P0038C05.31-1 "Os06g0275600 pr 0.493 0.590 0.533 5.5e-61
TAIR|locus:2028804390 CIB5 "AT1G26260" [Arabidopsis 0.462 0.620 0.472 8.1e-57
UNIPROTKB|Q6ZCV8365 P0028A08.20 "Os08g0487700 prot 0.476 0.682 0.474 1.4e-48
UNIPROTKB|Q5N802481 P0004D12.24 "BHLH transcriptio 0.453 0.492 0.492 4.8e-46
UNIPROTKB|Q84LH4327 OSJNBb0011H13.2 "Putative Heli 0.388 0.620 0.507 6e-46
TAIR|locus:2079676456 AT3G07340 "AT3G07340" [Arabido 0.304 0.348 0.581 1.2e-45
TAIR|locus:2201906366 AT1G10120 "AT1G10120" [Arabido 0.288 0.412 0.607 2.4e-44
TAIR|locus:2152551498 AT5G48560 "AT5G48560" [Arabido 0.388 0.407 0.475 7.5e-41
TAIR|locus:2205420 AT1G68920 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 709 (254.6 bits), Expect = 5.0e-85, Sum P(2) = 5.0e-85
 Identities = 162/270 (60%), Positives = 188/270 (69%)

Query:   246 ESLVNSHGEAKQGVGASGGDSDEAEFSGGGGQDEPSAVEGTGGEPSAKGLSSKKRKRNGQ 305
             ES V S  +AK  V  SG  S++ + SGG GQ         G E S+   ++KKRKRNGQ
Sbjct:   195 ESTVRSSEQAKPNVPGSGNVSEDTQSSGGNGQK--------GRETSS---NTKKRKRNGQ 243

Query:   306 -DIEFDQAKGGQSSGEAAKDNTENQRKGDHKPSSTGNKS-AGKQGKQGSQTSDPPKEEYI 363
              + E  Q+   Q S E   +N + +R  +  P+S G KS +GKQ  QG Q+SDPPK+ YI
Sbjct:   244 KNSEAAQSHRSQQSEEEPDNNGDEKRNDEQSPNSPGKKSNSGKQ--QGKQSSDPPKDGYI 301

Query:   364 HVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQR 423
             HVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGC+KVTGKAVMLDEIINYVQSLQR
Sbjct:   302 HVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCNKVTGKAVMLDEIINYVQSLQR 361

Query:   424 QVEFLSMKLATVNPRLDFNIEELLAKDVLQSRAGPSSTLGFSPDMPLVYPPVHQSQAGLM 483
             QVEFLSMKLATVNP++DFN+E LLAKD LQ RAG SST  F P+M + YPP+     G M
Sbjct:   362 QVEFLSMKLATVNPQMDFNLEGLLAKDALQLRAGSSSTTPFPPNMSMAYPPLPH---GFM 418

Query:   484 HGALPGMGNPSDILRRTINSQLTPMTGGFK 513
                L  +G       RTI S L+PM GGFK
Sbjct:   419 QQTLSSIG-------RTITSPLSPMNGGFK 441
GO:0005634 "nucleus" evidence=ISM
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS
GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS
UNIPROTKB|Q69JJ6 OSJNBa0026C08.22 "TA1 protein-like" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|Q5VR96 P0038C05.31-1 "Os06g0275600 protein" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2028804 CIB5 "AT1G26260" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q6ZCV8 P0028A08.20 "Os08g0487700 protein" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|Q5N802 P0004D12.24 "BHLH transcription factor" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|Q84LH4 OSJNBb0011H13.2 "Putative Helix-loop-helix DNA-binding domain containing protein" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2079676 AT3G07340 "AT3G07340" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2201906 AT1G10120 "AT1G10120" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2152551 AT5G48560 "AT5G48560" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9CAA9BH049_ARATHNo assigned EC number0.51050.83170.8950yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query523
smart0035353 smart00353, HLH, helix loop helix domain 1e-11
cd0008360 cd00083, HLH, Helix-loop-helix domain, found in sp 2e-11
pfam0001052 pfam00010, HLH, Helix-loop-helix DNA-binding domai 3e-08
PRK12678 672 PRK12678, PRK12678, transcription termination fact 0.003
>gnl|CDD|197674 smart00353, HLH, helix loop helix domain Back     alignment and domain information 
 Score = 59.2 bits (144), Expect = 1e-11
 Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 4/53 (7%)

Query: 377 SLAERVRREKISERMKFLQDLVPGC---SKVTGKAVMLDEIINYVQSLQRQVE 426
           +  ER RR KI+E    L+ L+P      K++ KA +L   I Y++SLQ +++
Sbjct: 1   NARERRRRRKINEAFDELRSLLPTLPKNKKLS-KAEILRLAIEYIKSLQEELQ 52

Length = 53
>gnl|CDD|238036 cd00083, HLH, Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long Back     alignment and domain information
>gnl|CDD|215654 pfam00010, HLH, Helix-loop-helix DNA-binding domain Back     alignment and domain information
>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 523
KOG1318411 consensus Helix loop helix transcription factor EB 99.33
cd0008360 HLH Helix-loop-helix domain, found in specific DNA 99.33
smart0035353 HLH helix loop helix domain. 99.26
PF0001055 HLH: Helix-loop-helix DNA-binding domain only nucl 99.23
KOG1319229 consensus bHLHZip transcription factor BIGMAX [Tra 98.97
KOG4304250 consensus Transcriptional repressors of the hairy/ 98.27
KOG3561 803 consensus Aryl-hydrocarbon receptor nuclear transl 98.03
KOG2588 953 consensus Predicted DNA-binding protein [Transcrip 97.78
KOG2483232 consensus Upstream transcription factor 2/L-myc-2 97.75
KOG3960284 consensus Myogenic helix-loop-helix transcription 97.29
PLN0321793 transcription factor ATBS1; Provisional 97.26
KOG0561 373 consensus bHLH transcription factor [Transcription 97.25
KOG4029228 consensus Transcription factor HAND2/Transcription 96.7
KOG3910632 consensus Helix loop helix transcription factor [T 95.75
KOG4447173 consensus Transcription factor TWIST [Transcriptio 88.07
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription] Back     alignment and domain information 
Probab=99.33  E-value=1.4e-12  Score=136.60  Aligned_cols=92  Identities=30%  Similarity=0.472  Sum_probs=74.3

Q ss_pred             cccccccccccHHHHHHHHHHHHHHHHHhhcCCCCC----CCCCchhhHHHHHHHHHHHHHHHHH------HHhhHhhcC
Q 009904          367 ARRGQATNSHSLAERVRREKISERMKFLQDLVPGCS----KVTGKAVMLDEIINYVQSLQRQVEF------LSMKLATVN  436 (523)
Q Consensus       367 arR~qa~~~HslaERrRRerINer~k~LqsLVP~~~----K~tDKASILdeAIdYIK~LQ~QVq~------Le~kl~~vn  436 (523)
                      .|.+++++.|+++|||||++||++|++|..|||.|+    ++ +|++||..+++||+.||+..+.      +++++++.|
T Consensus       228 ~rdr~Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~-nKgtILk~s~dYIr~Lqq~~q~~~E~~~rqk~le~~n  306 (411)
T KOG1318|consen  228 ERDRRKRDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKS-NKGTILKASCDYIRELQQTLQRARELENRQKKLESTN  306 (411)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhc-ccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHhHH
Confidence            444556679999999999999999999999999994    44 7999999999999999876552      334566777


Q ss_pred             CCccchhhHHhHHHhhhcCCCCC
Q 009904          437 PRLDFNIEELLAKDVLQSRAGPS  459 (523)
Q Consensus       437 p~l~~~ie~L~~~d~~q~~~~p~  459 (523)
                      ..|-..|++|......+.....+
T Consensus       307 ~~L~~rieeLk~~~~~~~~~~~~  329 (411)
T KOG1318|consen  307 QELALRIEELKSEAGRHGLQVEP  329 (411)
T ss_pred             HHHHHHHHHHHHHHHHhcCcccc
Confidence            77877888888887777765543

>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long Back     alignment and domain information
>smart00353 HLH helix loop helix domain Back     alignment and domain information
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt) Back     alignment and domain information
>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription] Back     alignment and domain information
>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription] Back     alignment and domain information
>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription] Back     alignment and domain information
>KOG2588 consensus Predicted DNA-binding protein [Transcription] Back     alignment and domain information
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription] Back     alignment and domain information
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription] Back     alignment and domain information
>PLN03217 transcription factor ATBS1; Provisional Back     alignment and domain information
>KOG0561 consensus bHLH transcription factor [Transcription] Back     alignment and domain information
>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription] Back     alignment and domain information
>KOG3910 consensus Helix loop helix transcription factor [Transcription] Back     alignment and domain information
>KOG4447 consensus Transcription factor TWIST [Transcription] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query523
1am9_A82 Srebp-1A, protein (sterol regulatory element bindi 7e-19
1an4_A65 Protein (upstream stimulatory factor); protein-DNA 2e-09
1nkp_B83 MAX protein, MYC proto-oncogene protein; transcrip 6e-08
1hlo_A80 Protein (transcription factor MAX); transcriptiona 8e-08
1nkp_A88 C-MYC, MYC proto-oncogene protein; transcription, 1e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
1a0a_A63 BHLH, protein (phosphate system positive regulator 6e-04
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C Length = 82 Back     alignment and structure
 Score = 80.1 bits (198), Expect = 7e-19
 Identities = 18/73 (24%), Positives = 38/73 (52%)

Query: 368 RRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEF 427
            RG+   +H+  E+  R  I++++  L+DLV G      K+ +L + I+Y++ LQ   + 
Sbjct: 2   SRGEKRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQK 61

Query: 428 LSMKLATVNPRLD 440
           L  +  ++   + 
Sbjct: 62  LKQENLSLRTAVH 74
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1 Length = 65 Back     alignment and structure
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B Length = 83 Back     alignment and structure
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1 Length = 80 Back     alignment and structure
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 Length = 88 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1 Length = 63 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query523
4ati_A118 MITF, microphthalmia-associated transcription fact 99.71
1am9_A82 Srebp-1A, protein (sterol regulatory element bindi 99.63
1a0a_A63 BHLH, protein (phosphate system positive regulator 99.52
1an4_A65 Protein (upstream stimulatory factor); protein-DNA 99.51
4h10_B71 Circadian locomoter output cycles protein kaput; B 99.49
4h10_A73 ARYL hydrocarbon receptor nuclear translocator-LI 99.46
1hlo_A80 Protein (transcription factor MAX); transcriptiona 99.44
1nkp_B83 MAX protein, MYC proto-oncogene protein; transcrip 99.43
1nkp_A88 C-MYC, MYC proto-oncogene protein; transcription, 99.38
3u5v_A76 Protein MAX, transcription factor E2-alpha chimer; 99.31
1nlw_A80 MAD protein, MAX dimerizer; transcription factor, 99.22
4ath_A83 MITF, microphthalmia-associated transcription fact 98.99
4f3l_A 361 Mclock, circadian locomoter output cycles protein 98.89
1mdy_A68 Protein (MYOD BHLH domain); protein-DNA complex, t 98.85
4f3l_B 387 BMAL1B; BHLH, PAS, circadian rhythm proteins, tran 98.81
2ql2_B60 Neurod1, neurogenic differentiation factor 1; basi 98.81
2lfh_A68 DNA-binding protein inhibitor ID-3; structural gen 98.22
4aya_A97 DNA-binding protein inhibitor ID-2; cell cycle; 2. 97.6
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A Back     alignment and structure
Probab=99.71  E-value=6.6e-18  Score=148.71  Aligned_cols=95  Identities=27%  Similarity=0.377  Sum_probs=50.7

Q ss_pred             CcccchhccccccccccccHHHHHHHHHHHHHHHHHhhcCCCCCC---CCCchhhHHHHHHHHHHHHHHHHHHHhh----
Q 009904          359 KEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSK---VTGKAVMLDEIINYVQSLQRQVEFLSMK----  431 (523)
Q Consensus       359 ke~~i~~RarR~qa~~~HslaERrRRerINer~k~LqsLVP~~~K---~tDKASILdeAIdYIK~LQ~QVq~Le~k----  431 (523)
                      .++..+.++++++++.+|+++||+||++||++|.+|++|||.|.+   ..+|++||+.||+||++||.+++.|+..    
T Consensus        14 t~~~~~~~~k~~~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~~~~~   93 (118)
T 4ati_A           14 TESEARALAKERQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLENRQ   93 (118)
T ss_dssp             -----------------CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC--
T ss_pred             CcchHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345567788888899999999999999999999999999999853   2389999999999999999999999854    


Q ss_pred             --HhhcCCCccchhhHHhHHHhhh
Q 009904          432 --LATVNPRLDFNIEELLAKDVLQ  453 (523)
Q Consensus       432 --l~~vnp~l~~~ie~L~~~d~~q  453 (523)
                        +...|..|...|++|...+..|
T Consensus        94 ~~l~~~n~~L~~riqeLE~~a~~~  117 (118)
T 4ati_A           94 KKLEHANRHLLLRVQELEMQARAH  117 (118)
T ss_dssp             ------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHc
Confidence              5667888888888887766544
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C Back     alignment and structure
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1 Back     alignment and structure
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1 Back     alignment and structure
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens} Back     alignment and structure
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens} Back     alignment and structure
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1 Back     alignment and structure
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B Back     alignment and structure
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 Back     alignment and structure
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A* Back     alignment and structure
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1 Back     alignment and structure
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus} Back     alignment and structure
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus} Back     alignment and structure
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B* Back     alignment and structure
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus} Back     alignment and structure
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus} Back     alignment and structure
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Back     alignment and structure
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 523
d1uklc_61 a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId 2e-16
d1am9a_80 a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxI 9e-16
d1nkpa_88 a.38.1.1 (A:) Myc proto-oncogene protein {Human (H 1e-14
d1a0aa_63 a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Sa 1e-13
d1mdya_68 a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus muscul 4e-13
d1nkpb_83 a.38.1.1 (B:) Max protein {Human (Homo sapiens) [T 3e-12
d1an4a_65 a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapien 6e-12
d1nlwa_79 a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [T 9e-12
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 61 Back     information, alignment and structure

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.3 bits (175), Expect = 2e-16
 Identities = 15/59 (25%), Positives = 29/59 (49%)

Query: 384 REKISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRLDFN 442
           R  I++++  L+DLV G      K+ +L + I+Y++ LQ+    L  +   +      N
Sbjct: 1   RSSINDKIIELKDLVMGTDAKMHKSGVLRKAIDYIKYLQQVNHKLRQENMVLKLANQKN 59
>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]} Length = 80 Back     information, alignment and structure
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]} Length = 88 Back     information, alignment and structure
>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 63 Back     information, alignment and structure
>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 68 Back     information, alignment and structure
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]} Length = 83 Back     information, alignment and structure
>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens) [TaxId: 9606]} Length = 65 Back     information, alignment and structure
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]} Length = 79 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query523
d1am9a_80 SREBP-1a {Human (Homo sapiens) [TaxId: 9606]} 99.53
d1a0aa_63 Pho4 B/HLH domain {Baker's yeast (Saccharomyces ce 99.42
d1nlwa_79 Mad protein {Human (Homo sapiens) [TaxId: 9606]} 99.42
d1mdya_68 Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10 99.4
d1uklc_61 SREBP-2 {Human (Homo sapiens) [TaxId: 9606]} 99.38
d1nkpb_83 Max protein {Human (Homo sapiens) [TaxId: 9606]} 99.38
d1nkpa_88 Myc proto-oncogene protein {Human (Homo sapiens) [ 99.38
d1an4a_65 Usf B/HLH domain {Human (Homo sapiens) [TaxId: 960 99.33
>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-1a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=2.2e-15  Score=121.74  Aligned_cols=64  Identities=25%  Similarity=0.381  Sum_probs=58.4

Q ss_pred             cccccHHHHHHHHHHHHHHHHHhhcCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHhhHhhcC
Q 009904          373 TNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVN  436 (523)
Q Consensus       373 ~~~HslaERrRRerINer~k~LqsLVP~~~K~tDKASILdeAIdYIK~LQ~QVq~Le~kl~~vn  436 (523)
                      ...|+.+||+||++||+.|..|++|||++....+|++||..||+||+.|+.+++.|..++..+.
T Consensus         7 R~~H~~~Er~RR~~in~~~~~L~~llP~~~~k~~K~~iL~~a~~yI~~L~~~~~~L~~e~~~lk   70 (80)
T d1am9a_           7 RTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLR   70 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3579999999999999999999999999875569999999999999999999999998877653
>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure