Citrus Sinensis ID: 009923

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520--
MGVERIFRDEANEEKGERARMASFVGAMAIADLVKTTLGPKGMSTGRGREVTVTNDGATILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQLAVDAVMRLKGSTNLESIQIIKKPGGSLKDSFLDEGFILDKKIGIGQPKRIENAKILVANTAMDTDKVKIYGARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVDELARKTPGKKSHAIEAFSRALVAIPTTIADNAGLDSAELIAQLRAEHQKEGCPAGIDVISGSVGDMAELGISESFKVKQAVLLSATEAAEMILRVDEIITCAPRRREDRM
ccccEEccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccEEEcccHHHHHcccccccHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHcHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHccccccccccEEEcccccccccccccEEEEccccccccccccccccEEEEccccccccccccccEEEEccHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEcccccHHHHHHHHHcccEEEEccccccHHHHHHHHccEEccccccccccccccccEEEEEEEEccEEEEEEccccccEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHcccEEEcccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccccEEEccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccc
cccEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccEEEEccccHHHHHcccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHEEEEEEccccccccEEEcEEEEEcccccccccEccccEEEEEEcccEEccccEcccEEEEccHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEcccccHHHHHHHHHcccEEEEEEcHHHHHHHHHHHccEEEEccccccHHHcccccEEEEEEccccEEEEEEccccccEEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHcccEEccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccEEEEEEcccccccHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccc
mgverifrdeaneekgERARMASFVGAMAIADLVKttlgpkgmstgrgrevtvtndgATILkslhidnpaAKVLVDIskvqddevgdgTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQLAVDAVMRLKGSTNLESIQIIkkpggslkdsfldegfildkkigigqpkriENAKILVAntamdtdkvkiYGARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVnrqliynfpeelfaDAGILAIEHADFDGIERLALVTggeiastfdnpesvklghCKLIEEImigedklihfsgveMGQACTIVLRGASHHVLDEAERSLHDALCVLSqtvndsrvlfgggwpeMVMAKEVDELarktpgkksHAIEAFSRALVAIpttiadnaglDSAELIAQLRAEHqkegcpagidvisgsvgdmaelgiseSFKVKQAVLLSATEAAEMILRVDEIitcaprrredrm
mgverifrdeaneekgerarMASFVGAMAIADLVKTtlgpkgmstgrgrevtvTNDGATILKSLHIDNPAAKVLVDISKvqddevgdgTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQLAVDAVMRLKGSTNLESIqiikkpggslkdSFLDEGFILdkkigigqpkrieNAKIlvantamdtdkvkIYGARVRVDSMSKAaeiegaekqkMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGGEiastfdnpesvkLGHCKLIEEIMIGEDKLIHFSGVEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVDELARKTPGKKSHAIEAFSRALVAIPTTIADNAGLDSAELIAQLRAEHQKEGCPAGIDVISGSVGDMAELGISESFKVKQAVLLSATEAaemilrvdeiitcaprrredrm
MGVERIFRDEANEEKGERARMASFVGAMAIADLVKTTLGPKGMSTGRGREVTVTNDGATILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQLAVDAVMRLKGSTNLESIQIIKKPGGSLKDSFLDEGFILDKKIGIGQPKRIENAKILVANTAMDTDKVKIYGARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVDELARKTPGKKSHAIEAFSRALVAIPTTIADNAGLDSAELIAQLRAEHQKEGCPAGIDVISGSVGDMAELGISESFKVKQAVLLSATEAAEMILRVDEIITCAPRRREDRM
**********************SFVGAMAIADLVKTTLG*********REVTVTNDGATILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQLAVDAVMRLKGSTNLESIQIIKKPGGSLKDSFLDEGFILDKKIGIGQPKRIENAKILVANTAMDTDKVKIYGARVRV********************VQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVD***********HAIEAFSRALVAIPTTIADNAGLDSAELIAQLRAEHQKEGCPAGIDVISGSVGDMAELGISESFKVKQAVLLSATEAAEMILRVDEIITCA********
*GVERIF**************ASFVGAMAIADLVKTTLGPKGMSTGRGREVTVTNDGATILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQLAVDAVMRLKGSTNLESIQIIKKPGGSLKDSFLDEGFILDKKIGIGQPKRIENAKILVANTAMDTDKVKIYGARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVDELARKTPGKKSHAIEAFSRALVAIPTTIADNAGLDSAELIAQLRAEHQKEGCPAGIDVISGSVGDMAELGISESFKVKQAVLLSATEAAEMILRVDEI************
MGVERIFRDEANEEKGERARMASFVGAMAIADLVKTTLGPKGMSTGRGREVTVTNDGATILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQLAVDAVMRLKGSTNLESIQIIKKPGGSLKDSFLDEGFILDKKIGIGQPKRIENAKILVANTAMDTDKVKIYGARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVDELA*********AIEAFSRALVAIPTTIADNAGLDSAELIAQLRAEHQKEGCPAGIDVISGSVGDMAELGISESFKVKQAVLLSATEAAEMILRVDEIITCAPRRREDRM
MGVERIFRDEANEEKGERARMASFVGAMAIADLVKTTLGPKGMSTGRGREVTVTNDGATILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQLAVDAVMRLKGSTNLESIQIIKKPGGSLKDSFLDEGFILDKKIGIGQPKRIENAKILVANTAMDTDKVKIYGARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVDELARKTPGKKSHAIEAFSRALVAIPTTIADNAGLDSAELIAQLRAEHQKEGCPAGIDVISGSVGDMAELGISESFKVKQAVLLSATEAAEMILRVDEIITCA********
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MGVERIFRDEANEEKGERARMASFVGAMAIADLVKTTLGPKGMSTGRGREVTVTNDGATILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQLAVDAVMRLKGSTNLESIQIIKKPGGSLKDSFLDEGFILDKKIGIGQPKRIENAKILVANTAMDTDKVKIYGARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVDELARKTPGKKSHAIEAFSRALVAIPTTIADNAGLDSAELIAQLRAEHQKEGCPAGIDVISGSVGDMAELGISESFKVKQAVLLSATEAAEMILRVDEIITCAPRRREDRM
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query522 2.2.26 [Sep-21-2011]
Q4R6F8535 T-complex protein 1 subun N/A no 0.982 0.958 0.685 0.0
P78371535 T-complex protein 1 subun yes no 0.982 0.958 0.685 0.0
P80314535 T-complex protein 1 subun yes no 0.982 0.958 0.685 0.0
Q3ZBH0535 T-complex protein 1 subun yes no 0.982 0.958 0.681 0.0
Q5XIM9535 T-complex protein 1 subun yes no 0.982 0.958 0.685 0.0
Q54ES9532 T-complex protein 1 subun yes no 0.986 0.968 0.636 0.0
Q10147527 Probable T-complex protei yes no 0.986 0.977 0.647 0.0
P39076527 T-complex protein 1 subun yes no 0.980 0.971 0.617 0.0
P47207529 T-complex protein 1 subun yes no 0.978 0.965 0.610 0.0
Q8SQP2508 T-complex protein 1 subun yes no 0.940 0.966 0.470 1e-123
>sp|Q4R6F8|TCPB_MACFA T-complex protein 1 subunit beta OS=Macaca fascicularis GN=CCT2 PE=2 SV=3 Back     alignment and function desciption
 Score =  714 bits (1843), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/518 (68%), Positives = 435/518 (83%), Gaps = 5/518 (0%)

Query: 6   IFRDEANEEKGERARMASFVGAMAIADLVKTTLGPKGM-----STGRGREVTVTNDGATI 60
           IF+  A+EE+ E AR+ SF+GA+AI DLVK+TLGPKGM     S+GR   + VTNDGATI
Sbjct: 11  IFKAGADEERAETARLTSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDASLMVTNDGATI 70

Query: 61  LKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGF 120
           LK++ +DNPAAKVLVD+S+VQDDEVGDGTTSV VLA ELLREAE L+A KIHP TII+G+
Sbjct: 71  LKNIGVDNPAAKVLVDMSRVQDDEVGDGTTSVTVLAAELLREAESLIAKKIHPQTIIAGW 130

Query: 121 RMAAECARDALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQLAVDAVMRL 180
           R A + AR+ALL   VD+  +   F+ DLM IA TTLSSK+L+  K+HF +LAV+AV+RL
Sbjct: 131 REATKAAREALLSSAVDHGSDEVKFRQDLMNIAGTTLSSKLLTHHKDHFTKLAVEAVLRL 190

Query: 181 KGSTNLESIQIIKKPGGSLKDSFLDEGFILDKKIGIGQPKRIENAKILVANTAMDTDKVK 240
           KGS NLE+I IIKK GGSL DS+LDEGF+LDKKIG+ QPKRIENAKIL+ANT MDTDK+K
Sbjct: 191 KGSGNLEAIHIIKKLGGSLADSYLDEGFLLDKKIGVNQPKRIENAKILIANTGMDTDKIK 250

Query: 241 IYGARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGIL 300
           I+G+RVRVDS +K AEIE AEK+KM+EKV++I+ HGINCF+NRQLIYN+PE+LF  AG++
Sbjct: 251 IFGSRVRVDSTAKVAEIEHAEKEKMKEKVERILKHGINCFINRQLIYNYPEQLFGAAGVM 310

Query: 301 AIEHADFDGIERLALVTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMGQA 360
           AIEHADF G+ERLALVTGGEIASTFD+PE VKLG CKLIEE+MIGEDKLIHFSGV +G+A
Sbjct: 311 AIEHADFAGVERLALVTGGEIASTFDHPELVKLGSCKLIEEVMIGEDKLIHFSGVALGEA 370

Query: 361 CTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVDELARKTPG 420
           CTIVLRGA+  +LDEAERSLHDALCVL+QTV DSR ++GGG  EM+MA  V +LA +TPG
Sbjct: 371 CTIVLRGATQQILDEAERSLHDALCVLAQTVKDSRTVYGGGCSEMLMAHAVTQLANRTPG 430

Query: 421 KKSHAIEAFSRALVAIPTTIADNAGLDSAELIAQLRAEHQKEGCPAGIDVISGSVGDMAE 480
           K++ A+E++++AL  +PT IADNAG DSA+L+AQLRA H +    AG+D+  G++GDMA 
Sbjct: 431 KEAVAMESYAKALRMLPTIIADNAGYDSADLVAQLRAAHSEGNTTAGLDMREGTIGDMAI 490

Query: 481 LGISESFKVKQAVLLSATEAAEMILRVDEIITCAPRRR 518
           LGI+ESF+VK+ VLLSA EAAE+ILRVD II  APR+R
Sbjct: 491 LGITESFQVKRQVLLSAAEAAEVILRVDNIIKAAPRKR 528
Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. As part of the BBS/CCT complex may play a role in the assembly of BBSome, a complex involved in ciliogenesis regulating transports vesicles to the cilia. Known to play a role, in vitro, in the folding of actin and tubulin.
Macaca fascicularis (taxid: 9541)
>sp|P78371|TCPB_HUMAN T-complex protein 1 subunit beta OS=Homo sapiens GN=CCT2 PE=1 SV=4 Back     alignment and function description
>sp|P80314|TCPB_MOUSE T-complex protein 1 subunit beta OS=Mus musculus GN=Cct2 PE=1 SV=4 Back     alignment and function description
>sp|Q3ZBH0|TCPB_BOVIN T-complex protein 1 subunit beta OS=Bos taurus GN=CCT2 PE=1 SV=3 Back     alignment and function description
>sp|Q5XIM9|TCPB_RAT T-complex protein 1 subunit beta OS=Rattus norvegicus GN=Cct2 PE=1 SV=3 Back     alignment and function description
>sp|Q54ES9|TCPB_DICDI T-complex protein 1 subunit beta OS=Dictyostelium discoideum GN=cct2 PE=1 SV=1 Back     alignment and function description
>sp|Q10147|TCPB_SCHPO Probable T-complex protein 1 subunit beta OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cct2 PE=3 SV=1 Back     alignment and function description
>sp|P39076|TCPB_YEAST T-complex protein 1 subunit beta OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CCT2 PE=1 SV=1 Back     alignment and function description
>sp|P47207|TCPB_CAEEL T-complex protein 1 subunit beta OS=Caenorhabditis elegans GN=cct-2 PE=1 SV=2 Back     alignment and function description
>sp|Q8SQP2|TCPB_ENCCU T-complex protein 1 subunit beta OS=Encephalitozoon cuniculi (strain GB-M1) GN=CCT2 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query522
449446604527 PREDICTED: T-complex protein 1 subunit b 1.0 0.990 0.922 0.0
225459806527 PREDICTED: T-complex protein 1 subunit b 1.0 0.990 0.925 0.0
302399079527 TCP domain class transcription factor [M 1.0 0.990 0.922 0.0
449488048534 PREDICTED: T-complex protein 1 subunit b 1.0 0.977 0.910 0.0
356539292527 PREDICTED: T-complex protein 1 subunit b 1.0 0.990 0.912 0.0
356542726527 PREDICTED: T-complex protein 1 subunit b 1.0 0.990 0.912 0.0
357505883527 T-complex protein 1 subunit beta [Medica 1.0 0.990 0.908 0.0
224068705527 predicted protein [Populus trichocarpa] 1.0 0.990 0.895 0.0
357511993527 T-complex protein 1 subunit beta [Medica 1.0 0.990 0.903 0.0
242052451525 hypothetical protein SORBIDRAFT_03g00949 0.996 0.990 0.891 0.0
>gi|449446604|ref|XP_004141061.1| PREDICTED: T-complex protein 1 subunit beta-like [Cucumis sativus] Back     alignment and taxonomy information
 Score =  989 bits (2558), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 486/527 (92%), Positives = 509/527 (96%), Gaps = 5/527 (0%)

Query: 1   MGVERIFRDEANEEKGERARMASFVGAMAIADLVKTTLGPKGM-----STGRGREVTVTN 55
           M V+++ +DEA+EEKGERARMASFVGAMAIADLVKTTLGPKGM     STGRGR+VTVTN
Sbjct: 1   MAVDKLLKDEASEEKGERARMASFVGAMAIADLVKTTLGPKGMDKILQSTGRGRQVTVTN 60

Query: 56  DGATILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMT 115
           DGATILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVA+KIHPMT
Sbjct: 61  DGATILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVASKIHPMT 120

Query: 116 IISGFRMAAECARDALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQLAVD 175
           II+G+RMAAECAR+ALLQKVVDNK + E FKSDL+KIAMTTLSSKILSQDKEHF +LAVD
Sbjct: 121 IIAGYRMAAECARNALLQKVVDNKADLEKFKSDLLKIAMTTLSSKILSQDKEHFAKLAVD 180

Query: 176 AVMRLKGSTNLESIQIIKKPGGSLKDSFLDEGFILDKKIGIGQPKRIENAKILVANTAMD 235
           AVMRLKGSTNLESIQIIKKPGGSLKDSFLDEGFILDKKIGIGQPKRIENAKILVANTAMD
Sbjct: 181 AVMRLKGSTNLESIQIIKKPGGSLKDSFLDEGFILDKKIGIGQPKRIENAKILVANTAMD 240

Query: 236 TDKVKIYGARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFA 295
           TDKVKIYGARVRVDSMSK AEIEGAEK+KMREKV+KII HGINCFVNRQLIYNFPEELFA
Sbjct: 241 TDKVKIYGARVRVDSMSKVAEIEGAEKEKMREKVKKIIGHGINCFVNRQLIYNFPEELFA 300

Query: 296 DAGILAIEHADFDGIERLALVTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGV 355
           DAGILAIEHADFDGIERLALVTGGEIASTFDNPESVKLG+CKLIEEIMIGEDKLIHFSGV
Sbjct: 301 DAGILAIEHADFDGIERLALVTGGEIASTFDNPESVKLGYCKLIEEIMIGEDKLIHFSGV 360

Query: 356 EMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVDELA 415
           EMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRV+ GGGWPEM+M+KEVDELA
Sbjct: 361 EMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVVLGGGWPEMIMSKEVDELA 420

Query: 416 RKTPGKKSHAIEAFSRALVAIPTTIADNAGLDSAELIAQLRAEHQKEGCPAGIDVISGSV 475
           RKTPGKKSHAIEAFSRAL AIPT IADNAGLDSA+LIAQLRAEH KEGC AGIDVI+GSV
Sbjct: 421 RKTPGKKSHAIEAFSRALQAIPTIIADNAGLDSADLIAQLRAEHHKEGCNAGIDVITGSV 480

Query: 476 GDMAELGISESFKVKQAVLLSATEAAEMILRVDEIITCAPRRREDRM 522
           GDMAELGISE+FKVKQA+LLSATEAAEMILRVDEIITCAPRRREDRM
Sbjct: 481 GDMAELGISEAFKVKQAILLSATEAAEMILRVDEIITCAPRRREDRM 527

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225459806|ref|XP_002285912.1| PREDICTED: T-complex protein 1 subunit beta [Vitis vinifera] gi|302141688|emb|CBI18891.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|302399079|gb|ADL36834.1| TCP domain class transcription factor [Malus x domestica] Back     alignment and taxonomy information
>gi|449488048|ref|XP_004157926.1| PREDICTED: T-complex protein 1 subunit beta-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356539292|ref|XP_003538133.1| PREDICTED: T-complex protein 1 subunit beta-like [Glycine max] Back     alignment and taxonomy information
>gi|356542726|ref|XP_003539816.1| PREDICTED: T-complex protein 1 subunit beta-like [Glycine max] Back     alignment and taxonomy information
>gi|357505883|ref|XP_003623230.1| T-complex protein 1 subunit beta [Medicago truncatula] gi|355498245|gb|AES79448.1| T-complex protein 1 subunit beta [Medicago truncatula] Back     alignment and taxonomy information
>gi|224068705|ref|XP_002326179.1| predicted protein [Populus trichocarpa] gi|222833372|gb|EEE71849.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357511993|ref|XP_003626285.1| T-complex protein 1 subunit beta [Medicago truncatula] gi|355501300|gb|AES82503.1| T-complex protein 1 subunit beta [Medicago truncatula] Back     alignment and taxonomy information
>gi|242052451|ref|XP_002455371.1| hypothetical protein SORBIDRAFT_03g009490 [Sorghum bicolor] gi|241927346|gb|EES00491.1| hypothetical protein SORBIDRAFT_03g009490 [Sorghum bicolor] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query522
TAIR|locus:2147132527 AT5G20890 [Arabidopsis thalian 1.0 0.990 0.886 4.8e-245
UNIPROTKB|Q5F424535 CCT2 "Uncharacterized protein" 0.982 0.958 0.698 2e-189
ZFIN|ZDB-GENE-020419-6535 cct2 "chaperonin containing TC 0.982 0.958 0.685 2.7e-187
UNIPROTKB|E2QSH7535 CCT2 "Uncharacterized protein" 0.982 0.958 0.685 4.4e-187
UNIPROTKB|F6V0D8535 CCT2 "Uncharacterized protein" 0.982 0.958 0.685 4.4e-187
UNIPROTKB|P78371535 CCT2 "T-complex protein 1 subu 0.982 0.958 0.685 5.6e-187
UNIPROTKB|B6V9S9535 CCT2 "Uncharacterized protein" 0.982 0.958 0.685 5.6e-187
UNIPROTKB|D0G0C8535 CCT2 "Chaperonin containing TC 0.982 0.958 0.683 7.1e-187
MGI|MGI:107186535 Cct2 "chaperonin containing Tc 0.982 0.958 0.685 1.9e-186
UNIPROTKB|Q3ZBH0535 CCT2 "T-complex protein 1 subu 0.982 0.958 0.681 3.9e-186
TAIR|locus:2147132 AT5G20890 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2361 (836.2 bits), Expect = 4.8e-245, P = 4.8e-245
 Identities = 467/527 (88%), Positives = 502/527 (95%)

Query:     1 MGVERIFRDEANEEKGERARMASFVGAMAIADLVKTTLGPKGM-----STGRGREVTVTN 55
             M +++IF+D+A+EEKGERARMASFVGAMAI+DLVK+TLGPKGM     STGRG  VTVTN
Sbjct:     1 MPIDKIFKDDASEEKGERARMASFVGAMAISDLVKSTLGPKGMDKILQSTGRGHAVTVTN 60

Query:    56 DGATILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMT 115
             DGATILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVA+KIHPMT
Sbjct:    61 DGATILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVASKIHPMT 120

Query:   116 IISGFRMAAECARDALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQLAVD 175
             II+G+RMA+ECAR+ALL++V+DNK+NAE F+SDL+KIAMTTL SKILSQDKEHF ++AVD
Sbjct:   121 IIAGYRMASECARNALLKRVIDNKDNAEKFRSDLLKIAMTTLCSKILSQDKEHFAEMAVD 180

Query:   176 AVMRLKGSTNLESIQIIKKPGGSLKDSFLDEGFILDKKIGIGQPKRIENAKILVANTAMD 235
             AV RLKGSTNLE+IQIIKKPGGSLKDSFLDEGFILDKKIGIGQPKRIENA ILVANTAMD
Sbjct:   181 AVFRLKGSTNLEAIQIIKKPGGSLKDSFLDEGFILDKKIGIGQPKRIENANILVANTAMD 240

Query:   236 TDKVKIYGARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFA 295
             TDKVKIYGARVRVDSM+K AEIEGAEK+KM++KV+KII HGINCFVNRQLIYNFPEELFA
Sbjct:   241 TDKVKIYGARVRVDSMTKVAEIEGAEKEKMKDKVKKIIGHGINCFVNRQLIYNFPEELFA 300

Query:   296 DAGILAIEHADFDGIERLALVTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGV 355
             DAGILAIEHADF+GIERL LVTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSG 
Sbjct:   301 DAGILAIEHADFEGIERLGLVTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGC 360

Query:   356 EMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVDELA 415
             EMGQAC+IVLRGASHHVLDEAERSLHDALCVLSQTVND+RVL GGGWPEMVMAKEVDELA
Sbjct:   361 EMGQACSIVLRGASHHVLDEAERSLHDALCVLSQTVNDTRVLLGGGWPEMVMAKEVDELA 420

Query:   416 RKTPGKKSHAIEAFSRALVAIPTTIADNAGLDSAELIAQLRAEHQKEGCPAGIDVISGSV 475
             RKT GKKSHAIEAFSRALVAIPTTIADNAGLDSAEL+AQLRAEH  EGC AGIDVI+G+V
Sbjct:   421 RKTAGKKSHAIEAFSRALVAIPTTIADNAGLDSAELVAQLRAEHHTEGCNAGIDVITGAV 480

Query:   476 GDMAELGISESFKVKQAVLLSATEAAEMILRVDEIITCAPRRREDRM 522
             GDM E GI E+FKVKQAVLLSATEA+EMILRVDEIITCAPRRREDRM
Sbjct:   481 GDMEERGIYEAFKVKQAVLLSATEASEMILRVDEIITCAPRRREDRM 527
GO:0005524 "ATP binding" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0006457 "protein folding" evidence=IEA
GO:0044267 "cellular protein metabolic process" evidence=IEA
GO:0051082 "unfolded protein binding" evidence=IEA
GO:0046658 "anchored to plasma membrane" evidence=IDA
GO:0005618 "cell wall" evidence=IDA
GO:0005829 "cytosol" evidence=IDA
GO:0006094 "gluconeogenesis" evidence=RCA
GO:0006364 "rRNA processing" evidence=RCA
GO:0007010 "cytoskeleton organization" evidence=RCA
GO:0009664 "plant-type cell wall organization" evidence=RCA
GO:0010498 "proteasomal protein catabolic process" evidence=RCA
GO:0042545 "cell wall modification" evidence=RCA
UNIPROTKB|Q5F424 CCT2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-020419-6 cct2 "chaperonin containing TCP1, subunit 2 (beta)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E2QSH7 CCT2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F6V0D8 CCT2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P78371 CCT2 "T-complex protein 1 subunit beta" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|B6V9S9 CCT2 "Uncharacterized protein" [Oryctolagus cuniculus (taxid:9986)] Back     alignment and assigned GO terms
UNIPROTKB|D0G0C8 CCT2 "Chaperonin containing TCP1, subunit 2 (Beta)" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:107186 Cct2 "chaperonin containing Tcp1, subunit 2 (beta)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q3ZBH0 CCT2 "T-complex protein 1 subunit beta" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9V2T4THSB_SULACNo assigned EC number0.35420.96550.9113yesno
Q10147TCPB_SCHPONo assigned EC number0.64730.98650.9772yesno
P47207TCPB_CAEELNo assigned EC number0.61030.97890.9659yesno
Q54ES9TCPB_DICDINo assigned EC number0.63650.98650.9680yesno
P48424THSA_THEACNo assigned EC number0.36410.95210.9119yesno
O30561THS1_HALVDNo assigned EC number0.36770.96550.9yesno
Q3ZBH0TCPB_BOVINNo assigned EC number0.68140.98270.9588yesno
P78371TCPB_HUMANNo assigned EC number0.68530.98270.9588yesno
Q9V2S9THSA_SULSONo assigned EC number0.37520.98650.9212yesno
Q8SQP2TCPB_ENCCUNo assigned EC number0.47040.94060.9665yesno
Q9V2Q7THS_PYRABNo assigned EC number0.37370.94060.8927yesno
P80314TCPB_MOUSENo assigned EC number0.68530.98270.9588yesno
O24735THSB_SULTONo assigned EC number0.36380.95400.9021yesno
O26885THSB_METTHNo assigned EC number0.37670.93480.9070yesno
O57762THS_PYRHONo assigned EC number0.37570.94060.8943yesno
O28821THSB_ARCFUNo assigned EC number0.36970.95780.9174yesno
Q52500THSB_PYRKONo assigned EC number0.37810.94060.8992yesno
Q5XIM9TCPB_RATNo assigned EC number0.68530.98270.9588yesno
Q9YA66THSB_AERPENo assigned EC number0.37640.95210.9069yesno
P50016THS_METKANo assigned EC number0.37520.94440.9045yesno
Q4R6F8TCPB_MACFANo assigned EC number0.68530.98270.9588N/Ano
P39076TCPB_YEASTNo assigned EC number0.61700.98080.9715yesno
Q58405THS_METJANo assigned EC number0.36020.94440.9095yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query522
cd03336517 cd03336, TCP1_beta, TCP-1 (CTT or eukaryotic type 0.0
PTZ00212533 PTZ00212, PTZ00212, T-complex protein 1 subunit be 0.0
TIGR02341518 TIGR02341, chap_CCT_beta, T-complex protein 1, bet 0.0
cd00309464 cd00309, chaperonin_type_I_II, chaperonin families 0.0
pfam00118481 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin fami 1e-157
COG0459524 COG0459, GroL, Chaperonin GroEL (HSP60 family) [Po 1e-148
cd03343517 cd03343, cpn60, cpn60 chaperonin family 1e-145
cd03340522 cd03340, TCP1_eta, TCP-1 (CTT or eukaryotic type I 1e-134
TIGR02339519 TIGR02339, thermosome_arch, thermosome, various su 1e-129
cd03335527 cd03335, TCP1_alpha, TCP-1 (CTT or eukaryotic type 1e-127
cd03339526 cd03339, TCP1_epsilon, TCP-1 (CTT or eukaryotic ty 1e-123
TIGR02345523 TIGR02345, chap_CCT_eta, T-complex protein 1, eta 1e-121
TIGR02340536 TIGR02340, chap_CCT_alpha, T-complex protein 1, al 1e-120
cd03338515 cd03338, TCP1_delta, TCP-1 (CTT or eukaryotic type 1e-113
TIGR02343532 TIGR02343, chap_CCT_epsi, T-complex protein 1, eps 1e-107
TIGR02342517 TIGR02342, chap_CCT_delta, T-complex protein 1, de 1e-100
cd03341472 cd03341, TCP1_theta, TCP-1 (CTT or eukaryotic type 6e-91
TIGR02344525 TIGR02344, chap_CCT_gamma, T-complex protein 1, ga 1e-80
TIGR02346531 TIGR02346, chap_CCT_theta, T-complex protein 1, th 7e-78
TIGR02347531 TIGR02347, chap_CCT_zeta, T-complex protein 1, zet 7e-75
cd03342484 cd03342, TCP1_zeta, TCP-1 (CTT or eukaryotic type 2e-69
cd03333209 cd03333, chaperonin_like, chaperonin_like superfam 1e-62
cd03337480 cd03337, TCP1_gamma, TCP-1 (CTT or eukaryotic type 1e-42
cd03337480 cd03337, TCP1_gamma, TCP-1 (CTT or eukaryotic type 1e-41
cd03344520 cd03344, GroEL, GroEL_like type I chaperonin 3e-15
PTZ00114555 PTZ00114, PTZ00114, Heat shock protein 60; Provisi 5e-15
PRK00013542 PRK00013, groEL, chaperonin GroEL; Reviewed 4e-14
PRK12849542 PRK12849, groEL, chaperonin GroEL; Reviewed 5e-14
cd03334261 cd03334, Fab1_TCP, TCP-1 like domain of the eukary 5e-13
TIGR02348524 TIGR02348, GroEL, chaperonin GroL 2e-12
PRK12850544 PRK12850, groEL, chaperonin GroEL; Reviewed 6e-12
PRK12851541 PRK12851, groEL, chaperonin GroEL; Reviewed 1e-11
PRK12852545 PRK12852, groEL, chaperonin GroEL; Reviewed 5e-10
PRK14104546 PRK14104, PRK14104, chaperonin GroEL; Provisional 8e-10
PLN03167600 PLN03167, PLN03167, Chaperonin-60 beta subunit; Pr 4e-09
CHL00093529 CHL00093, groEL, chaperonin GroEL 9e-07
cd03344520 cd03344, GroEL, GroEL_like type I chaperonin 4e-05
PRK12849542 PRK12849, groEL, chaperonin GroEL; Reviewed 1e-04
PRK12851541 PRK12851, groEL, chaperonin GroEL; Reviewed 1e-04
TIGR02348524 TIGR02348, GroEL, chaperonin GroL 0.002
>gnl|CDD|239452 cd03336, TCP1_beta, TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit Back     alignment and domain information 
 Score =  949 bits (2456), Expect = 0.0
 Identities = 390/517 (75%), Positives = 445/517 (86%), Gaps = 5/517 (0%)

Query: 6   IFRDEANEEKGERARMASFVGAMAIADLVKTTLGPKGM-----STGRGREVTVTNDGATI 60
           I +D A EEKGE AR++SFVGA+AI DLVKTTLGPKGM     S GR   VTVTNDGATI
Sbjct: 1   ILKDGAQEEKGETARLSSFVGAIAIGDLVKTTLGPKGMDKILQSVGRSGGVTVTNDGATI 60

Query: 61  LKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGF 120
           LKS+ +DNPAAKVLVDISKVQDDEVGDGTTSV VLA ELLREAEKLVA KIHP TII G+
Sbjct: 61  LKSIGVDNPAAKVLVDISKVQDDEVGDGTTSVTVLAAELLREAEKLVAQKIHPQTIIEGY 120

Query: 121 RMAAECARDALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQLAVDAVMRL 180
           RMA   AR+ALL   VD+  + E F+ DL+ IA TTLSSKIL+QDKEHF +LAVDAV+RL
Sbjct: 121 RMATAAAREALLSSAVDHSSDEEAFREDLLNIARTTLSSKILTQDKEHFAELAVDAVLRL 180

Query: 181 KGSTNLESIQIIKKPGGSLKDSFLDEGFILDKKIGIGQPKRIENAKILVANTAMDTDKVK 240
           KGS NL++IQIIKK GGSLKDS+LDEGF+LDKKIG+ QPKRIENAKIL+ANT MDTDK+K
Sbjct: 181 KGSGNLDAIQIIKKLGGSLKDSYLDEGFLLDKKIGVNQPKRIENAKILIANTPMDTDKIK 240

Query: 241 IYGARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGIL 300
           I+GA+VRVDS +K AEIE AEK+KM+ KV+KI+ HGINCF+NRQLIYN+PE+LFADAGI+
Sbjct: 241 IFGAKVRVDSTAKVAEIEEAEKEKMKNKVEKILKHGINCFINRQLIYNYPEQLFADAGIM 300

Query: 301 AIEHADFDGIERLALVTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMGQA 360
           AIEHADFDG+ERLALVTGGEIASTFD+PE VKLG CKLIEEIMIGEDKLI FSGV  G+A
Sbjct: 301 AIEHADFDGVERLALVTGGEIASTFDHPELVKLGTCKLIEEIMIGEDKLIRFSGVAAGEA 360

Query: 361 CTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVDELARKTPG 420
           CTIVLRGAS  +LDEAERSLHDALCVL+QTV D+RV+ GGG  EM+MAK V+ELA+KTPG
Sbjct: 361 CTIVLRGASQQILDEAERSLHDALCVLAQTVKDTRVVLGGGCSEMLMAKAVEELAKKTPG 420

Query: 421 KKSHAIEAFSRALVAIPTTIADNAGLDSAELIAQLRAEHQKEGCPAGIDVISGSVGDMAE 480
           KKS AIEAF++AL  +PT IADNAG DSAEL+AQLRA H      AG+D+  G+VGDM E
Sbjct: 421 KKSLAIEAFAKALRQLPTIIADNAGYDSAELVAQLRAAHYNGNTTAGLDMRKGTVGDMKE 480

Query: 481 LGISESFKVKQAVLLSATEAAEMILRVDEIITCAPRR 517
           LGI+ESFKVK+ VLLSA+EAAEMILRVD+II CAPR+
Sbjct: 481 LGITESFKVKRQVLLSASEAAEMILRVDDIIKCAPRK 517

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 517
>gnl|CDD|185514 PTZ00212, PTZ00212, T-complex protein 1 subunit beta; Provisional Back     alignment and domain information
>gnl|CDD|211733 TIGR02341, chap_CCT_beta, T-complex protein 1, beta subunit Back     alignment and domain information
>gnl|CDD|238189 cd00309, chaperonin_type_I_II, chaperonin families, type I and type II Back     alignment and domain information
>gnl|CDD|215730 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family Back     alignment and domain information
>gnl|CDD|223535 COG0459, GroL, Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|239459 cd03343, cpn60, cpn60 chaperonin family Back     alignment and domain information
>gnl|CDD|239456 cd03340, TCP1_eta, TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit Back     alignment and domain information
>gnl|CDD|233823 TIGR02339, thermosome_arch, thermosome, various subunits, archaeal Back     alignment and domain information
>gnl|CDD|239451 cd03335, TCP1_alpha, TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit Back     alignment and domain information
>gnl|CDD|239455 cd03339, TCP1_epsilon, TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit Back     alignment and domain information
>gnl|CDD|200176 TIGR02345, chap_CCT_eta, T-complex protein 1, eta subunit Back     alignment and domain information
>gnl|CDD|131393 TIGR02340, chap_CCT_alpha, T-complex protein 1, alpha subunit Back     alignment and domain information
>gnl|CDD|239454 cd03338, TCP1_delta, TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit Back     alignment and domain information
>gnl|CDD|131396 TIGR02343, chap_CCT_epsi, T-complex protein 1, epsilon subunit Back     alignment and domain information
>gnl|CDD|233824 TIGR02342, chap_CCT_delta, T-complex protein 1, delta subunit Back     alignment and domain information
>gnl|CDD|239457 cd03341, TCP1_theta, TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit Back     alignment and domain information
>gnl|CDD|233825 TIGR02344, chap_CCT_gamma, T-complex protein 1, gamma subunit Back     alignment and domain information
>gnl|CDD|233826 TIGR02346, chap_CCT_theta, T-complex protein 1, theta subunit Back     alignment and domain information
>gnl|CDD|233827 TIGR02347, chap_CCT_zeta, T-complex protein 1, zeta subunit Back     alignment and domain information
>gnl|CDD|239458 cd03342, TCP1_zeta, TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit Back     alignment and domain information
>gnl|CDD|239449 cd03333, chaperonin_like, chaperonin_like superfamily Back     alignment and domain information
>gnl|CDD|239453 cd03337, TCP1_gamma, TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit Back     alignment and domain information
>gnl|CDD|239453 cd03337, TCP1_gamma, TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit Back     alignment and domain information
>gnl|CDD|239460 cd03344, GroEL, GroEL_like type I chaperonin Back     alignment and domain information
>gnl|CDD|185455 PTZ00114, PTZ00114, Heat shock protein 60; Provisional Back     alignment and domain information
>gnl|CDD|234573 PRK00013, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|237230 PRK12849, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|239450 cd03334, Fab1_TCP, TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1 Back     alignment and domain information
>gnl|CDD|233828 TIGR02348, GroEL, chaperonin GroL Back     alignment and domain information
>gnl|CDD|237231 PRK12850, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|171770 PRK12851, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|237232 PRK12852, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|172594 PRK14104, PRK14104, chaperonin GroEL; Provisional Back     alignment and domain information
>gnl|CDD|215611 PLN03167, PLN03167, Chaperonin-60 beta subunit; Provisional Back     alignment and domain information
>gnl|CDD|177025 CHL00093, groEL, chaperonin GroEL Back     alignment and domain information
>gnl|CDD|239460 cd03344, GroEL, GroEL_like type I chaperonin Back     alignment and domain information
>gnl|CDD|237230 PRK12849, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|171770 PRK12851, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|233828 TIGR02348, GroEL, chaperonin GroL Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 522
cd03336517 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaper 100.0
PTZ00212533 T-complex protein 1 subunit beta; Provisional 100.0
KOG0361543 consensus Chaperonin complex component, TCP-1 eta 100.0
KOG0363527 consensus Chaperonin complex component, TCP-1 beta 100.0
TIGR02341519 chap_CCT_beta T-complex protein 1, beta subunit. M 100.0
TIGR02347531 chap_CCT_zeta T-complex protein 1, zeta subunit. M 100.0
TIGR02339519 thermosome_arch thermosome, various subunits, arch 100.0
TIGR02344525 chap_CCT_gamma T-complex protein 1, gamma subunit. 100.0
cd03340522 TCP1_eta TCP-1 (CTT or eukaryotic type II) chapero 100.0
cd03343517 cpn60 cpn60 chaperonin family. Chaperonins are inv 100.0
cd03335527 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chape 100.0
TIGR02342517 chap_CCT_delta T-complex protein 1, delta subunit. 100.0
TIGR02345522 chap_CCT_eta T-complex protein 1, eta subunit. Mem 100.0
TIGR02343532 chap_CCT_epsi T-complex protein 1, epsilon subunit 100.0
cd03339526 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) cha 100.0
TIGR02346531 chap_CCT_theta T-complex protein 1, theta subunit. 100.0
TIGR02340536 chap_CCT_alpha T-complex protein 1, alpha subunit. 100.0
cd03338515 TCP1_delta TCP-1 (CTT or eukaryotic type II) chape 100.0
cd03342484 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaper 100.0
cd03337480 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chape 100.0
KOG0358534 consensus Chaperonin complex component, TCP-1 delt 100.0
cd03341472 TCP1_theta TCP-1 (CTT or eukaryotic type II) chape 100.0
cd00309464 chaperonin_type_I_II chaperonin families, type I a 100.0
COG0459524 GroL Chaperonin GroEL (HSP60 family) [Posttranslat 100.0
PF00118485 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperon 100.0
PRK12849542 groEL chaperonin GroEL; Reviewed 100.0
PRK00013542 groEL chaperonin GroEL; Reviewed 100.0
KOG0364527 consensus Chaperonin complex component, TCP-1 gamm 100.0
KOG0362537 consensus Chaperonin complex component, TCP-1 thet 100.0
PTZ00114555 Heat shock protein 60; Provisional 100.0
PRK12851541 groEL chaperonin GroEL; Reviewed 100.0
cd03344520 GroEL GroEL_like type I chaperonin. Chaperonins ar 100.0
KOG0360545 consensus Chaperonin complex component, TCP-1 alph 100.0
PRK12850544 groEL chaperonin GroEL; Reviewed 100.0
PRK12852545 groEL chaperonin GroEL; Reviewed 100.0
TIGR02348524 GroEL chaperonin GroL. This family consists of Gro 100.0
CHL00093529 groEL chaperonin GroEL 100.0
PRK14104546 chaperonin GroEL; Provisional 100.0
PLN03167600 Chaperonin-60 beta subunit; Provisional 100.0
KOG0359520 consensus Chaperonin complex component, TCP-1 zeta 100.0
KOG0357400 consensus Chaperonin complex component, TCP-1 epsi 100.0
KOG0356550 consensus Mitochondrial chaperonin, Cpn60/Hsp60p [ 100.0
cd03334261 Fab1_TCP TCP-1 like domain of the eukaryotic phosp 100.0
cd03333209 chaperonin_like chaperonin_like superfamily. Chape 100.0
KOG0230 1598 consensus Phosphatidylinositol-4-phosphate 5-kinas 99.85
>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit Back     alignment and domain information 
Probab=100.00  E-value=6.5e-109  Score=883.77  Aligned_cols=510  Identities=76%  Similarity=1.112  Sum_probs=488.9

Q ss_pred             ccchhhhhhhHHHHHHHHHHHHHHHHHhhhcCCCCCCCcc-cC----CCeEEecChHHHhhhccccChHHHHHHHHHhhc
Q 009923            7 FRDEANEEKGERARMASFVGAMAIADLVKTTLGPKGMSTG-RG----REVTVTNDGATILKSLHIDNPAAKVLVDISKVQ   81 (522)
Q Consensus         7 ~~~~~~~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~k~-~~----g~~~iTnDg~tIlk~l~~~hP~a~ll~~~~~~~   81 (522)
                      ++++.+..+|+++++.|+.||..++++++|||||+||+|| ++    |+++|||||+||+++|+++||+++|+++++++|
T Consensus         2 ~~~~~~~~~~~~a~~~n~~~~~~i~~~v~tslGP~G~~Kmi~~~~~~g~~~iTnDG~tIlk~l~~~hP~akll~~~a~~q   81 (517)
T cd03336           2 LKDGAQEEKGETARLSSFVGAIAIGDLVKTTLGPKGMDKILQSVGRSGGVTVTNDGATILKSIGVDNPAAKVLVDISKVQ   81 (517)
T ss_pred             CCCccccccHHHHHHHHHHHHHHHHHHHhcCCCCCcCceEeecCCCCCCeEEeccHHHHHHHccCcChHHHHHHHHHHHH
Confidence            4677788999999999999999999999999999999999 43    899999999999999999999999999999999


Q ss_pred             ccccCCCchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhhcccccCCchhhhHHHHHHHHHHHhhccc
Q 009923           82 DDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKVVDNKENAETFKSDLMKIAMTTLSSKI  161 (522)
Q Consensus        82 ~~~~GDGtts~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~~~~~~~~~~~~~~~l~~i~~t~l~sk~  161 (522)
                      ++++||||||+|+|+++||+++.+|+++|+||+.|++||+.|.+.+++.|+++++|++.+.+.+++.|+++++|+++||+
T Consensus        82 d~~~GDGTTtvvvLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~l~~ia~t~lssk~  161 (517)
T cd03336          82 DDEVGDGTTSVTVLAAELLREAEKLVAQKIHPQTIIEGYRMATAAAREALLSSAVDHSSDEEAFREDLLNIARTTLSSKI  161 (517)
T ss_pred             HhHhCCChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccCcccccchhHHHHHHHHHhhccccc
Confidence            99999999999999999999999999999999999999999999999999999998854322235789999999999999


Q ss_pred             cchhhhHHHHHHHHHHHhhcCCCCCcCeEEEEecCCCCcCcceeeeEEEeccCCCCCCccccCcceEEeecccccccccc
Q 009923          162 LSQDKEHFGQLAVDAVMRLKGSTNLESIQIIKKPGGSLKDSFLDEGFILDKKIGIGQPKRIENAKILVANTAMDTDKVKI  241 (522)
Q Consensus       162 ~~~~~~~la~lv~~a~~~~~~~~~~~~I~i~~i~Gg~~~dS~l~~Givl~~~~~~~~~~~i~~~rIll~~~~L~~~~~~~  241 (522)
                      .+.++++|++++++|+..++..++.++|++++++|++++||++++|+++++++.+.||++++||||++++++|++++++.
T Consensus       162 ~~~~~~~l~~l~~~A~~~v~~~~~~~~i~i~ki~G~s~~ds~l~~G~v~~~~~~~~~~~~~~n~kIli~~~~le~~~~~~  241 (517)
T cd03336         162 LTQDKEHFAELAVDAVLRLKGSGNLDAIQIIKKLGGSLKDSYLDEGFLLDKKIGVNQPKRIENAKILIANTPMDTDKIKI  241 (517)
T ss_pred             cchhHHHHHHHHHHHHHHhhccCCccceeEEEccCCCccceEEEeeEEEecccCCCCCCeeccccEEEEecCCCcccccc
Confidence            99999999999999999998788889999999999999999999999999987677899999999999999999999887


Q ss_pred             cCeEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCCCCchHHHHHHHcCCeEEecCChhhHHHHHHHhCCee
Q 009923          242 YGARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGGEI  321 (522)
Q Consensus       242 ~~~~~~i~~~~~l~~l~~~e~~~l~~~~~~I~~~~v~lVl~~~~i~~~~~~~l~~~~I~~i~~v~~~~L~~ia~~tGa~i  321 (522)
                      +++++.+++++++..++..|+++++++++.|++.++++++++++|+|.+++||.++||++++++++++|+|||++|||++
T Consensus       242 ~~~~~~~~~~~~~~~l~~~E~~~~~~~v~~I~~~gv~~v~~~~~I~~~~~~~l~~~~I~av~~v~~~~L~rIa~~tGa~i  321 (517)
T cd03336         242 FGAKVRVDSTAKVAEIEEAEKEKMKNKVEKILKHGINCFINRQLIYNYPEQLFADAGIMAIEHADFDGVERLALVTGGEI  321 (517)
T ss_pred             cCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeCCCccHHHHHHHHHCCcEEEecCCHHHHHHHHHHhCCEE
Confidence            56789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCCCCCccccceEEEEEEcCeEEEEEecccCCceEEEEecCCCHHHHHHHHHHHhHHHHHHHHHhhCCccccCCC
Q 009923          322 ASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGG  401 (522)
Q Consensus       322 i~~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~~~~~~vvpGGG  401 (522)
                      +++++++++.++|+|+.|++..+|+++|++|++|+++++|||+|||+|+.+++|.+|+++||+++++++++++++|||||
T Consensus       322 i~~l~~~~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~er~i~Dal~~~~~~i~~~~vvpGGG  401 (517)
T cd03336         322 ASTFDHPELVKLGTCKLIEEIMIGEDKLIRFSGVAAGEACTIVLRGASQQILDEAERSLHDALCVLAQTVKDTRVVLGGG  401 (517)
T ss_pred             ecccCCCCcccccccceEEEEEECCeEEEEEEccCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhCCCEEeCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhHHHHHHhcCCCHHHHHHHHHHHHhcCCCceeEEcCCCcccccccC
Q 009923          402 WPEMVMAKEVDELARKTPGKKSHAIEAFSRALVAIPTTIADNAGLDSAELIAQLRAEHQKEGCPAGIDVISGSVGDMAEL  481 (522)
Q Consensus       402 ~~E~~la~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~l~~l~~~h~~~~~~~Gid~~~g~~~d~~~~  481 (522)
                      ++|++|+.+|+++++..++++|+++++|++||+.||++|++|||+|+.+++.+|+..|.+++.++|+|+.+|++.||++.
T Consensus       402 a~e~~ls~~l~~~~~~~~~~~~~~i~~~a~ALe~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g~~~d~~~~  481 (517)
T cd03336         402 CSEMLMAKAVEELAKKTPGKKSLAIEAFAKALRQLPTIIADNAGYDSAELVAQLRAAHYNGNTTAGLDMRKGTVGDMKEL  481 (517)
T ss_pred             HHHHHHHHHHHHHhhhCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCceeeecCCCCccchhhc
Confidence            99999999999999888999999999999999999999999999999999999999998888899999999999999999


Q ss_pred             CcccchHHHHHHHHHHHHHHHHHHhhhHHHhcCCC
Q 009923          482 GISESFKVKQAVLLSATEAAEMILRVDEIITCAPR  516 (522)
Q Consensus       482 gi~dp~~vk~~~l~~A~e~~~~iL~iD~iI~~~~~  516 (522)
                      |||||+.+|+++|+.|+|+|++||+||++|..+|+
T Consensus       482 gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~~~~  516 (517)
T cd03336         482 GITESFKVKRQVLLSASEAAEMILRVDDIIKCAPR  516 (517)
T ss_pred             CceecHHHHHHHHHHHHHHHHHHHhHhHHhhcCCC
Confidence            99999999999999999999999999999999874

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
>PTZ00212 T-complex protein 1 subunit beta; Provisional Back     alignment and domain information
>KOG0361 consensus Chaperonin complex component, TCP-1 eta subunit (CCT7) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0363 consensus Chaperonin complex component, TCP-1 beta subunit (CCT2) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit Back     alignment and domain information
>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit Back     alignment and domain information
>TIGR02339 thermosome_arch thermosome, various subunits, archaeal Back     alignment and domain information
>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit Back     alignment and domain information
>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit Back     alignment and domain information
>cd03343 cpn60 cpn60 chaperonin family Back     alignment and domain information
>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit Back     alignment and domain information
>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit Back     alignment and domain information
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit Back     alignment and domain information
>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit Back     alignment and domain information
>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit Back     alignment and domain information
>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit Back     alignment and domain information
>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit Back     alignment and domain information
>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit Back     alignment and domain information
>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit Back     alignment and domain information
>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit Back     alignment and domain information
>KOG0358 consensus Chaperonin complex component, TCP-1 delta subunit (CCT4) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit Back     alignment and domain information
>cd00309 chaperonin_type_I_II chaperonin families, type I and type II Back     alignment and domain information
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism Back     alignment and domain information
>PRK12849 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>PRK00013 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>KOG0364 consensus Chaperonin complex component, TCP-1 gamma subunit (CCT3) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0362 consensus Chaperonin complex component, TCP-1 theta subunit (CCT8) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PTZ00114 Heat shock protein 60; Provisional Back     alignment and domain information
>PRK12851 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>cd03344 GroEL GroEL_like type I chaperonin Back     alignment and domain information
>KOG0360 consensus Chaperonin complex component, TCP-1 alpha subunit (CCT1) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK12850 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>PRK12852 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>TIGR02348 GroEL chaperonin GroL Back     alignment and domain information
>CHL00093 groEL chaperonin GroEL Back     alignment and domain information
>PRK14104 chaperonin GroEL; Provisional Back     alignment and domain information
>PLN03167 Chaperonin-60 beta subunit; Provisional Back     alignment and domain information
>KOG0359 consensus Chaperonin complex component, TCP-1 zeta subunit (CCT6) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0357 consensus Chaperonin complex component, TCP-1 epsilon subunit (CCT5) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0356 consensus Mitochondrial chaperonin, Cpn60/Hsp60p [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1 Back     alignment and domain information
>cd03333 chaperonin_like chaperonin_like superfamily Back     alignment and domain information
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query522
3iyg_B513 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 0.0
3p9d_B527 The Crystal Structure Of Yeast Cct Reveals Intrinsi 0.0
3ko1_A553 Cystal Structure Of Thermosome From Acidianus Tengc 7e-87
1q3r_A548 Crystal Structure Of The Chaperonin From Thermococc 8e-86
1q3s_A548 Crystal Structure Of The Chaperonin From Thermococc 2e-85
1q2v_A548 Crystal Structure Of The Chaperonin From Thermococc 8e-85
1a6d_A545 Thermosome From T. Acidophilum Length = 545 2e-82
3iyg_H515 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 1e-80
1a6d_B543 Thermosome From T. Acidophilum Length = 543 4e-79
3los_A543 Atomic Model Of Mm-Cpn In The Closed State Length = 4e-79
3izh_A513 Mm-Cpn D386a With Atp Length = 513 5e-79
3rus_A543 Crystal Structure Of Cpn-Rls In Complex With Adp Fr 2e-78
3izi_A513 Mm-Cpn Rls With Atp Length = 513 2e-78
3iyg_A529 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 8e-78
3iyf_A521 Atomic Model Of The Lidless Mm-Cpn In The Open Stat 1e-75
3izn_A491 Mm-Cpn Deltalid With Atp Length = 491 1e-75
3izk_A491 Mm-Cpn Rls Deltalid With Atp Length = 491 4e-75
3j02_A491 Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Boun 1e-74
3p9d_G550 The Crystal Structure Of Yeast Cct Reveals Intrinsi 1e-74
3iyg_E515 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 1e-73
3p9d_E562 The Crystal Structure Of Yeast Cct Reveals Intrinsi 3e-73
3p9d_A559 The Crystal Structure Of Yeast Cct Reveals Intrinsi 2e-71
3aq1_B500 Open State Monomer Of A Group Ii Chaperonin From Me 3e-71
3iyg_D518 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 1e-68
3p9d_D528 The Crystal Structure Of Yeast Cct Reveals Intrinsi 2e-63
3iyg_G515 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 9e-58
3iyg_Z517 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 4e-54
3p9d_F546 The Crystal Structure Of Yeast Cct Reveals Intrinsi 1e-47
3iyg_Q512 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 7e-41
3p9d_H568 The Crystal Structure Of Yeast Cct Reveals Intrinsi 1e-38
3p9d_C590 The Crystal Structure Of Yeast Cct Reveals Intrinsi 1e-27
3p9d_C590 The Crystal Structure Of Yeast Cct Reveals Intrinsi 4e-22
3rtk_A546 Crystal Structure Of Cpn60.2 From Mycobacterium Tub 1e-16
1we3_A543 Crystal Structure Of The Chaperonin Complex Cpn60CP 6e-12
1we3_A543 Crystal Structure Of The Chaperonin Complex Cpn60CP 1e-07
1sjp_A504 Mycobacterium Tuberculosis Chaperonin60.2 Length = 7e-12
1e0r_B159 Beta-Apical Domain Of Thermosome Length = 159 2e-11
1ass_A159 Apical Domain Of The Chaperonin From Thermoplasma A 5e-10
1iok_A545 Crystal Structure Of Chaperonin-60 From Paracoccus 5e-10
1aon_A547 Crystal Structure Of The Asymmetric Chaperonin Comp 1e-09
4aaq_A548 Atp-Triggered Molecular Mechanics Of The Chaperonin 1e-09
2eu1_A548 Crystal Structure Of The Chaperonin Groel-E461k Len 1e-09
2yey_A524 Crystal Structure Of The Allosteric-Defective Chape 1e-09
3c9v_A526 C7 Symmetrized Structure Of Unliganded Groel At 4.7 2e-09
1j4z_A547 Structural And Mechanistic Basis For Allostery In T 2e-09
1pcq_A524 Crystal Structure Of Groel-Groes Length = 524 2e-09
1sx3_A525 Groel14-(Atpgammas)14 Length = 525 2e-08
1grl_A548 The Crystal Structure Of The Bacterial Chaperonin G 2e-08
1ss8_A524 Groel Length = 524 2e-08
1kp8_A547 Structural Basis For Groel-Assisted Protein Folding 2e-08
1gr5_A547 Solution Structure Of Apo Groel By Cryo-Electron Mi 2e-08
1oel_A547 Conformational Variability In The Refined Structure 2e-08
3cau_A526 D7 Symmetrized Structure Of Unliganded Groel At 4.2 2e-08
>pdb|3IYG|B Chain B, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 513 Back     alignment and structure 
Iteration: 1

 Score =  706 bits (1822), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/511 (68%), Positives = 430/511 (84%), Gaps = 5/511 (0%)
Query: 11  ANEEKGERARMASFVGAMAIADLVKTTLGPKGM-----STGRGREVTVTNDGATILKSLH 65
           A+EE+ E AR++SF+GA+AI DLVK+TLGPKGM     S+GR   + VTNDGATILK++ 
Sbjct: 3   ADEERAETARLSSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDASLMVTNDGATILKNIG 62
Query: 66  IDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAE 125
           +DNPAAKVLVD+S+VQDDEVGDGTTSV VLA ELLREAE L+A KIHP TII+G+R A +
Sbjct: 63  VDNPAAKVLVDMSRVQDDEVGDGTTSVTVLAAELLREAESLIAKKIHPQTIIAGWREATK 122
Query: 126 CARDALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQLAVDAVMRLKGSTN 185
            AR ALL   VD+  +   F+ DLM IA TTLSSK+L+  K+HF +LAV+AV+RLKGS N
Sbjct: 123 AARQALLNSAVDHGSDEVKFRQDLMNIAGTTLSSKLLTHHKDHFTKLAVEAVLRLKGSGN 182
Query: 186 LESIQIIKKPGGSLKDSFLDEGFILDKKIGIGQPKRIENAKILVANTAMDTDKVKIYGAR 245
           LE+I +IKK GGSL DS+LDEGF+LDKKIG+ QPKRIENAKIL+ANT MDTDK+KI+G+R
Sbjct: 183 LEAIHVIKKLGGSLADSYLDEGFLLDKKIGVNQPKRIENAKILIANTGMDTDKIKIFGSR 242
Query: 246 VRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHA 305
           VRVDS +K AEIE AEK+KM+EKV++I+ HGINCF+NRQLIYN+PE+LF  AG++AIEHA
Sbjct: 243 VRVDSTAKVAEIEHAEKEKMKEKVERILKHGINCFINRQLIYNYPEQLFGAAGVMAIEHA 302
Query: 306 DFDGIERLALVTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMGQACTIVL 365
           DF G+ERLALVTGGEIASTFD+PE VKLG CKLIEE+MIGEDKLIHFSGV +G+ACTIVL
Sbjct: 303 DFVGVERLALVTGGEIASTFDHPELVKLGSCKLIEEVMIGEDKLIHFSGVALGEACTIVL 362
Query: 366 RGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVDELARKTPGKKSHA 425
           RGA+  +LDEAERSLHDALCVL+QTV DSR ++GGG  EM+MA  V +LA +TPGK++ A
Sbjct: 363 RGATQQILDEAERSLHDALCVLAQTVKDSRTVYGGGCSEMLMAHAVTQLASRTPGKEAVA 422
Query: 426 IEAFSRALVAIPTTIADNAGLDSAELIAQLRAEHQKEGCPAGIDVISGSVGDMAELGISE 485
           +E++++AL  +PT IADNAG DSA+L+AQLRA H +    AG+D+  G++GDM+ LGI+E
Sbjct: 423 MESYAKALRMLPTIIADNAGYDSADLVAQLRAAHSEGKTTAGLDMKEGTIGDMSVLGITE 482
Query: 486 SFKVKQAVLLSATEAAEMILRVDEIITCAPR 516
           SF+VK+ VLLSA EAAE+ILRVD II  APR
Sbjct: 483 SFQVKRQVLLSAAEAAEVILRVDNIIKAAPR 513
>pdb|3P9D|B Chain B, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 527 Back     alignment and structure
>pdb|3KO1|A Chain A, Cystal Structure Of Thermosome From Acidianus Tengchongensis Strain S5 Length = 553 Back     alignment and structure
>pdb|1Q3R|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus Strain Ks-1 (Nucleotide-Free Form Of Single Mutant) Length = 548 Back     alignment and structure
>pdb|1Q3S|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus Strain Ks-1 (Formiii Crystal Complexed With Adp) Length = 548 Back     alignment and structure
>pdb|1Q2V|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus Strain Ks-1 (Nucleotide-Free Form) Length = 548 Back     alignment and structure
>pdb|1A6D|A Chain A, Thermosome From T. Acidophilum Length = 545 Back     alignment and structure
>pdb|3IYG|H Chain H, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 515 Back     alignment and structure
>pdb|1A6D|B Chain B, Thermosome From T. Acidophilum Length = 543 Back     alignment and structure
>pdb|3LOS|A Chain A, Atomic Model Of Mm-Cpn In The Closed State Length = 543 Back     alignment and structure
>pdb|3IZH|A Chain A, Mm-Cpn D386a With Atp Length = 513 Back     alignment and structure
>pdb|3RUS|A Chain A, Crystal Structure Of Cpn-Rls In Complex With Adp From Methanococcus Maripaludis Length = 543 Back     alignment and structure
>pdb|3IZI|A Chain A, Mm-Cpn Rls With Atp Length = 513 Back     alignment and structure
>pdb|3IYG|A Chain A, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 529 Back     alignment and structure
>pdb|3IYF|A Chain A, Atomic Model Of The Lidless Mm-Cpn In The Open State Length = 521 Back     alignment and structure
>pdb|3IZN|A Chain A, Mm-Cpn Deltalid With Atp Length = 491 Back     alignment and structure
>pdb|3IZK|A Chain A, Mm-Cpn Rls Deltalid With Atp Length = 491 Back     alignment and structure
>pdb|3J02|A Chain A, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State Length = 491 Back     alignment and structure
>pdb|3P9D|G Chain G, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 550 Back     alignment and structure
>pdb|3IYG|E Chain E, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 515 Back     alignment and structure
>pdb|3P9D|E Chain E, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 562 Back     alignment and structure
>pdb|3P9D|A Chain A, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 559 Back     alignment and structure
>pdb|3AQ1|B Chain B, Open State Monomer Of A Group Ii Chaperonin From Methanococcoides Burtonii Length = 500 Back     alignment and structure
>pdb|3IYG|D Chain D, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 518 Back     alignment and structure
>pdb|3P9D|D Chain D, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 528 Back     alignment and structure
>pdb|3IYG|G Chain G, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 515 Back     alignment and structure
>pdb|3IYG|Z Chain Z, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 517 Back     alignment and structure
>pdb|3P9D|F Chain F, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 546 Back     alignment and structure
>pdb|3IYG|Q Chain Q, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 512 Back     alignment and structure
>pdb|3P9D|H Chain H, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 568 Back     alignment and structure
>pdb|3P9D|C Chain C, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 590 Back     alignment and structure
>pdb|3P9D|C Chain C, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 590 Back     alignment and structure
>pdb|3RTK|A Chain A, Crystal Structure Of Cpn60.2 From Mycobacterium Tuberculosis At 2.8a Length = 546 Back     alignment and structure
>pdb|1WE3|A Chain A, Crystal Structure Of The Chaperonin Complex Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS Length = 543 Back     alignment and structure
>pdb|1WE3|A Chain A, Crystal Structure Of The Chaperonin Complex Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS Length = 543 Back     alignment and structure
>pdb|1SJP|A Chain A, Mycobacterium Tuberculosis Chaperonin60.2 Length = 504 Back     alignment and structure
>pdb|1E0R|B Chain B, Beta-Apical Domain Of Thermosome Length = 159 Back     alignment and structure
>pdb|1ASS|A Chain A, Apical Domain Of The Chaperonin From Thermoplasma Acidophilum Length = 159 Back     alignment and structure
>pdb|1IOK|A Chain A, Crystal Structure Of Chaperonin-60 From Paracoccus Denitrificans Length = 545 Back     alignment and structure
>pdb|1AON|A Chain A, Crystal Structure Of The Asymmetric Chaperonin Complex GroelGROES(ADP)7 Length = 547 Back     alignment and structure
>pdb|4AAQ|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel Length = 548 Back     alignment and structure
>pdb|2EU1|A Chain A, Crystal Structure Of The Chaperonin Groel-E461k Length = 548 Back     alignment and structure
>pdb|2YEY|A Chain A, Crystal Structure Of The Allosteric-Defective Chaperonin Groel E434k Mutant Length = 524 Back     alignment and structure
>pdb|3C9V|A Chain A, C7 Symmetrized Structure Of Unliganded Groel At 4.7 Angstrom Resolution From Cryoem Length = 526 Back     alignment and structure
>pdb|1J4Z|A Chain A, Structural And Mechanistic Basis For Allostery In The Bacterial Chaperonin Groel; See Remark 400 Length = 547 Back     alignment and structure
>pdb|1PCQ|A Chain A, Crystal Structure Of Groel-Groes Length = 524 Back     alignment and structure
>pdb|1SX3|A Chain A, Groel14-(Atpgammas)14 Length = 525 Back     alignment and structure
>pdb|1GRL|A Chain A, The Crystal Structure Of The Bacterial Chaperonin Groel At 2.8 Angstroms Length = 548 Back     alignment and structure
>pdb|1SS8|A Chain A, Groel Length = 524 Back     alignment and structure
>pdb|1KP8|A Chain A, Structural Basis For Groel-Assisted Protein Folding From The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A Resolution Length = 547 Back     alignment and structure
>pdb|1GR5|A Chain A, Solution Structure Of Apo Groel By Cryo-Electron Microscopy Length = 547 Back     alignment and structure
>pdb|1OEL|A Chain A, Conformational Variability In The Refined Structure Of The Chaperonin Groel At 2.8 Angstrom Resolution Length = 547 Back     alignment and structure
>pdb|3CAU|A Chain A, D7 Symmetrized Structure Of Unliganded Groel At 4.2 Angstrom Resolution By Cryoem Length = 526 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query522
3iyg_B513 T-complex protein 1 subunit beta; TRIC/CCT, asymme 0.0
3p9d_B527 T-complex protein 1 subunit beta; HSP60, eukaryoti 0.0
3iyg_H515 T-complex protein 1 subunit ETA; TRIC/CCT, asymmet 0.0
3p9d_G550 T-complex protein 1 subunit ETA; HSP60, eukaryotic 0.0
3iyg_A529 T-complex protein 1 subunit alpha; TRIC/CCT, asymm 0.0
3p9d_E562 T-complex protein 1 subunit epsilon; HSP60, eukary 0.0
3ko1_A553 Chaperonin; 9-fold symmetry, double ring, ATP hydr 0.0
1a6d_B543 Thermosome (beta subunit); group II chaperonin, CC 0.0
3p9d_A559 T-complex protein 1 subunit alpha; HSP60, eukaryot 0.0
3p9d_D528 T-complex protein 1 subunit delta; HSP60, eukaryot 0.0
3iyg_E515 T-complex protein 1 subunit; TRIC/CCT, asymmetric, 0.0
1a6d_A545 Thermosome (alpha subunit); group II chaperonin, C 0.0
3ruv_A543 Chaperonin, CPN; double-ring, protein folding mach 0.0
3iyg_D518 T-complex protein 1 subunit delta; TRIC/CCT, asymm 0.0
3aq1_B500 Thermosome subunit; group II chaperonin, protein f 0.0
1q3q_A548 Thermosome alpha subunit; chaperone, chaperonin; H 0.0
3p9d_F546 T-complex protein 1 subunit zeta; HSP60, eukaryoti 0.0
3iyg_Z517 T-complex protein 1 subunit zeta; TRIC/CCT, asymme 0.0
3iyg_G515 T-complex protein 1 subunit gamma; TRIC/CCT, asymm 1e-174
3iyg_Q512 T-complex protein 1 subunit theta; TRIC/CCT, asymm 1e-172
3p9d_H568 T-complex protein 1 subunit theta; HSP60, eukaryot 1e-163
3p9d_C590 T-complex protein 1 subunit gamma; HSP60, eukaryot 1e-155
1gml_A178 T-complex protein 1 subunit gamma; chaperone, chap 1e-34
1ass_A159 Thermosome; chaperonin, HSP60, TCP1, groel, thermo 2e-26
3rtk_A546 60 kDa chaperonin 2; heat shock protein, chaperone 3e-14
1iok_A545 Chaperonin 60; chaperone; 3.20A {Paracoccus denitr 4e-14
1we3_A543 CPN60(groel); chaperonin, chaperone, groel, HSP60, 5e-14
1we3_A543 CPN60(groel); chaperonin, chaperone, groel, HSP60, 4e-05
1kp8_A547 Groel protein; chaperonin, assisted protein foldin 6e-14
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-07
>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A Length = 513 Back     alignment and structure
 Score =  730 bits (1888), Expect = 0.0
 Identities = 350/511 (68%), Positives = 430/511 (84%), Gaps = 5/511 (0%)

Query: 11  ANEEKGERARMASFVGAMAIADLVKTTLGPKGM-----STGRGREVTVTNDGATILKSLH 65
           A+EE+ E AR++SF+GA+AI DLVK+TLGPKGM     S+GR   + VTNDGATILK++ 
Sbjct: 3   ADEERAETARLSSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDASLMVTNDGATILKNIG 62

Query: 66  IDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAE 125
           +DNPAAKVLVD+S+VQDDEVGDGTTSV VLA ELLREAE L+A KIHP TII+G+R A +
Sbjct: 63  VDNPAAKVLVDMSRVQDDEVGDGTTSVTVLAAELLREAESLIAKKIHPQTIIAGWREATK 122

Query: 126 CARDALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQLAVDAVMRLKGSTN 185
            AR ALL   VD+  +   F+ DLM IA TTLSSK+L+  K+HF +LAV+AV+RLKGS N
Sbjct: 123 AARQALLNSAVDHGSDEVKFRQDLMNIAGTTLSSKLLTHHKDHFTKLAVEAVLRLKGSGN 182

Query: 186 LESIQIIKKPGGSLKDSFLDEGFILDKKIGIGQPKRIENAKILVANTAMDTDKVKIYGAR 245
           LE+I +IKK GGSL DS+LDEGF+LDKKIG+ QPKRIENAKIL+ANT MDTDK+KI+G+R
Sbjct: 183 LEAIHVIKKLGGSLADSYLDEGFLLDKKIGVNQPKRIENAKILIANTGMDTDKIKIFGSR 242

Query: 246 VRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHA 305
           VRVDS +K AEIE AEK+KM+EKV++I+ HGINCF+NRQLIYN+PE+LF  AG++AIEHA
Sbjct: 243 VRVDSTAKVAEIEHAEKEKMKEKVERILKHGINCFINRQLIYNYPEQLFGAAGVMAIEHA 302

Query: 306 DFDGIERLALVTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMGQACTIVL 365
           DF G+ERLALVTGGEIASTFD+PE VKLG CKLIEE+MIGEDKLIHFSGV +G+ACTIVL
Sbjct: 303 DFVGVERLALVTGGEIASTFDHPELVKLGSCKLIEEVMIGEDKLIHFSGVALGEACTIVL 362

Query: 366 RGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVDELARKTPGKKSHA 425
           RGA+  +LDEAERSLHDALCVL+QTV DSR ++GGG  EM+MA  V +LA +TPGK++ A
Sbjct: 363 RGATQQILDEAERSLHDALCVLAQTVKDSRTVYGGGCSEMLMAHAVTQLASRTPGKEAVA 422

Query: 426 IEAFSRALVAIPTTIADNAGLDSAELIAQLRAEHQKEGCPAGIDVISGSVGDMAELGISE 485
           +E++++AL  +PT IADNAG DSA+L+AQLRA H +    AG+D+  G++GDM+ LGI+E
Sbjct: 423 MESYAKALRMLPTIIADNAGYDSADLVAQLRAAHSEGKTTAGLDMKEGTIGDMSVLGITE 482

Query: 486 SFKVKQAVLLSATEAAEMILRVDEIITCAPR 516
           SF+VK+ VLLSA EAAE+ILRVD II  APR
Sbjct: 483 SFQVKRQVLLSAAEAAEVILRVDNIIKAAPR 513
>3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b* Length = 527 Back     alignment and structure
>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515 Back     alignment and structure
>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g* Length = 550 Back     alignment and structure
>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 529 Back     alignment and structure
>3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e* Length = 562 Back     alignment and structure
>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis} Length = 553 Back     alignment and structure
>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B Length = 543 Back     alignment and structure
>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* Length = 559 Back     alignment and structure
>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d* Length = 528 Back     alignment and structure
>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515 Back     alignment and structure
>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A* Length = 545 Back     alignment and structure
>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A Length = 543 Back     alignment and structure
>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 518 Back     alignment and structure
>3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii} Length = 500 Back     alignment and structure
>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A Length = 548 Back     alignment and structure
>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f* Length = 546 Back     alignment and structure
>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 517 Back     alignment and structure
>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515 Back     alignment and structure
>3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 512 Back     alignment and structure
>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h* Length = 568 Back     alignment and structure
>3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 2bbm_B 2bbn_B Length = 590 Back     alignment and structure
>1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin, tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A Length = 178 Back     alignment and structure
>1ass_A Thermosome; chaperonin, HSP60, TCP1, groel, thermoplasma ACI ATP-binding; 2.30A {Thermoplasma acidophilum} SCOP: c.8.5.2 PDB: 1asx_A Length = 159 Back     alignment and structure
>3rtk_A 60 kDa chaperonin 2; heat shock protein, chaperone; 2.80A {Mycobacterium tuberculosis} PDB: 1sjp_A Length = 546 Back     alignment and structure
>1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 Length = 545 Back     alignment and structure
>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a* Length = 543 Back     alignment and structure
>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a* Length = 543 Back     alignment and structure
>1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone; HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A 1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A 3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A 3cau_A ... Length = 547 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query522
3iyg_B513 T-complex protein 1 subunit beta; TRIC/CCT, asymme 100.0
3iyg_H515 T-complex protein 1 subunit ETA; TRIC/CCT, asymmet 100.0
3iyg_A529 T-complex protein 1 subunit alpha; TRIC/CCT, asymm 100.0
3ko1_A553 Chaperonin; 9-fold symmetry, double ring, ATP hydr 100.0
3ruv_A543 Chaperonin, CPN; double-ring, protein folding mach 100.0
3iyg_G515 T-complex protein 1 subunit gamma; TRIC/CCT, asymm 100.0
1q3q_A548 Thermosome alpha subunit; chaperone, chaperonin; H 100.0
1a6d_B543 Thermosome (beta subunit); group II chaperonin, CC 100.0
3p9d_G550 T-complex protein 1 subunit ETA; HSP60, eukaryotic 100.0
3iyg_D518 T-complex protein 1 subunit delta; TRIC/CCT, asymm 100.0
1a6d_A545 Thermosome (alpha subunit); group II chaperonin, C 100.0
3p9d_A559 T-complex protein 1 subunit alpha; HSP60, eukaryot 100.0
3p9d_B527 T-complex protein 1 subunit beta; HSP60, eukaryoti 100.0
3iyg_Z517 T-complex protein 1 subunit zeta; TRIC/CCT, asymme 100.0
3iyg_E515 T-complex protein 1 subunit; TRIC/CCT, asymmetric, 100.0
3p9d_C590 T-complex protein 1 subunit gamma; HSP60, eukaryot 100.0
3p9d_H568 T-complex protein 1 subunit theta; HSP60, eukaryot 100.0
3iyg_Q512 T-complex protein 1 subunit theta; TRIC/CCT, asymm 100.0
3p9d_D528 T-complex protein 1 subunit delta; HSP60, eukaryot 100.0
3p9d_F546 T-complex protein 1 subunit zeta; HSP60, eukaryoti 100.0
3p9d_E562 T-complex protein 1 subunit epsilon; HSP60, eukary 100.0
3aq1_B500 Thermosome subunit; group II chaperonin, protein f 100.0
1we3_A543 CPN60(groel); chaperonin, chaperone, groel, HSP60, 100.0
1kp8_A547 Groel protein; chaperonin, assisted protein foldin 100.0
1iok_A545 Chaperonin 60; chaperone; 3.20A {Paracoccus denitr 100.0
3rtk_A546 60 kDa chaperonin 2; heat shock protein, chaperone 100.0
1gml_A178 T-complex protein 1 subunit gamma; chaperone, chap 100.0
1ass_A159 Thermosome; chaperonin, HSP60, TCP1, groel, thermo 99.97
3m6c_A194 60 kDa chaperonin 1; chaperone, ATP-binding, nucle 98.34
3osx_A201 60 kDa chaperonin; alpha, beta, apical domain, cha 98.26
1srv_A145 Protein (groel (HSP60 class)); chaperone, cell div 98.08
>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A Back     alignment and structure
Probab=100.00  E-value=1.9e-113  Score=914.57  Aligned_cols=507  Identities=68%  Similarity=1.048  Sum_probs=487.6

Q ss_pred             hhhhhhhHHHHHHHHHHHHHHHHHhhhcCCCCCCCcc-cC----CCeEEecChHHHhhhccccChHHHHHHHHHhhcccc
Q 009923           10 EANEEKGERARMASFVGAMAIADLVKTTLGPKGMSTG-RG----REVTVTNDGATILKSLHIDNPAAKVLVDISKVQDDE   84 (522)
Q Consensus        10 ~~~~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~k~-~~----g~~~iTnDg~tIlk~l~~~hP~a~ll~~~~~~~~~~   84 (522)
                      ++++.+|.++|.+|+.||..|+++|||||||+||+|| ++    |+++|||||+||||+|+++||+|+|++++|++||++
T Consensus         2 ~~~~~~g~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~~~G~~~iTnDG~tIlk~i~v~hp~Akll~e~a~~qd~e   81 (513)
T 3iyg_B            2 GADEERAETARLSSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDASLMVTNDGATILKNIGVDNPAAKVLVDMSRVQDDE   81 (513)
T ss_pred             CcchhhhHHHHHHHHHHHHHHHHHHHhccCCCCCeEEeecCCCCCCeEEECCHHHHHHHccccCHHHHHHHHHHHHhhhh
Confidence            5678899999999999999999999999999999999 54    789999999999999999999999999999999999


Q ss_pred             cCCCchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhhcccccCCchhhhHHHHHHHHHHHhhccccch
Q 009923           85 VGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQ  164 (522)
Q Consensus        85 ~GDGtts~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~  164 (522)
                      +||||||+++|+++||+++.+++.+|+||+.|++||++|.+.+++.|+++++|++.+.+.+++.|.++++|+++||+.++
T Consensus        82 ~GDGTTtvvVLA~~LL~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~~~~~~~~l~~va~tslssK~~~~  161 (513)
T 3iyg_B           82 VGDGTTSVTVLAAELLREAESLIAKKIHPQTIIAGWREATKAARQALLNSAVDHGSDEVKFRQDLMNIAGTTLSSKLLTH  161 (513)
T ss_pred             hCCChhhhHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhCcCcccccccCHHHHHHHHHhhhccccccc
Confidence            99999999999999999999999999999999999999999999999999999874321235789999999999999999


Q ss_pred             hhhHHHHHHHHHHHhhcCCCCCcCeEEEEecCCCCcCcceeeeEEEeccCCCCCCccccCcceEEeecccccccccccCe
Q 009923          165 DKEHFGQLAVDAVMRLKGSTNLESIQIIKKPGGSLKDSFLDEGFILDKKIGIGQPKRIENAKILVANTAMDTDKVKIYGA  244 (522)
Q Consensus       165 ~~~~la~lv~~a~~~~~~~~~~~~I~i~~i~Gg~~~dS~l~~Givl~~~~~~~~~~~i~~~rIll~~~~L~~~~~~~~~~  244 (522)
                      ++++|++++++|+..+++++|+++|+|++++||++.||++++|++|++++.+.||++++||+|++++++|++++++..++
T Consensus       162 ~~~~i~~livdAv~~V~~~~d~~~I~V~ki~gg~~~ds~lv~G~v~dk~~~~~m~~~~en~kIll~~~~Le~~k~e~~~~  241 (513)
T 3iyg_B          162 HKDHFTKLAVEAVLRLKGSGNLEAIHVIKKLGGSLADSYLDEGFLLDKKIGVNQPKRIENAKILIANTGMDTDKIKIFGS  241 (513)
T ss_pred             chHHHHHHHHHHHHHhcccCCcCeEEEEEeCCCCccceeEEeeEEEeccccCCCceeecCceEEEEcCCcccccccccCC
Confidence            99999999999999998888889999999999999999999999999998777999999999999999999999883357


Q ss_pred             EEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCCCCchHHHHHHHcCCeEEecCChhhHHHHHHHhCCeeccc
Q 009923          245 RVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGGEIAST  324 (522)
Q Consensus       245 ~~~i~~~~~l~~l~~~e~~~l~~~~~~I~~~~v~lVl~~~~i~~~~~~~l~~~~I~~i~~v~~~~L~~ia~~tGa~ii~~  324 (522)
                      ++.+++++++.++.+.|+++++.++++|.+.|++||+++++|++.+++||.++||++++++++.+|+|||++|||+++++
T Consensus       242 ~v~iss~~~l~~~~~~E~~~l~~~le~I~~~g~~vvi~~~~I~~~al~~L~~~~I~av~~~~~~~le~ia~~tGa~ii~~  321 (513)
T 3iyg_B          242 RVRVDSTAKVAEIEHAEKEKMKEKVERILKHGINCFINRQLIYNYPEQLFGAAGVMAIEHADFVGVERLALVTGGEIAST  321 (513)
T ss_pred             ceEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEcCCccHHHHHHHHHcCceEEecCCHHHHHHHHHHhCCEEecc
Confidence            88999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCccccceEEEEEEcCeEEEEEecccCCceEEEEecCCCHHHHHHHHHHHhHHHHHHHHHhhCCccccCCCchH
Q 009923          325 FDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPE  404 (522)
Q Consensus       325 ~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~~~~~~vvpGGG~~E  404 (522)
                      ++++++.++|+|+.|+++.+|+++|++|+||+++++|||+|||+|+.+++|.||+++||++++|++++++++|||||++|
T Consensus       322 l~~l~~~~LG~a~~v~~~~ig~~~~~~~~g~~~~~~~tI~lrG~t~~~l~E~kr~l~DAl~~~r~av~~~~iVpGGGa~e  401 (513)
T 3iyg_B          322 FDHPELVKLGSCKLIEEVMIGEDKLIHFSGVALGEACTIVLRGATQQILDEAERSLHDALCVLAQTVKDSRTVYGGGCSE  401 (513)
T ss_pred             cccCCHhHCCcccEEEEEEECCeEEEEEecCCCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhCCcEEeCCcHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhHHHHHHhcCCCHHHHHHHHHHHHhcCCCceeEEcCCCcccccccCCcc
Q 009923          405 MVMAKEVDELARKTPGKKSHAIEAFSRALVAIPTTIADNAGLDSAELIAQLRAEHQKEGCPAGIDVISGSVGDMAELGIS  484 (522)
Q Consensus       405 ~~la~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~l~~l~~~h~~~~~~~Gid~~~g~~~d~~~~gi~  484 (522)
                      ++|+.+|++++.+.++++|+++++|++||+.||++|++|||+|+.+++.+|+..|.+++.++|||+.+|++.||++.|||
T Consensus       402 ~~~~~~L~~~~~~~~g~~q~~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~G~d~~~g~~~d~~~~gI~  481 (513)
T 3iyg_B          402 MLMAHAVTQLASRTPGKEAVAMESYAKALRMLPTIIADNAGYDSADLVAQLRAAHSEGKTTAGLDMKEGTIGDMSVLGIT  481 (513)
T ss_pred             HHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCceeecCCCCCccchHhccCE
Confidence            99999999999989999999999999999999999999999999999999999998888899999999999999999999


Q ss_pred             cchHHHHHHHHHHHHHHHHHHhhhHHHhcCCC
Q 009923          485 ESFKVKQAVLLSATEAAEMILRVDEIITCAPR  516 (522)
Q Consensus       485 dp~~vk~~~l~~A~e~~~~iL~iD~iI~~~~~  516 (522)
                      ||+.||+++|+.|+|+|+||||||++|...|+
T Consensus       482 dp~~vk~~al~~A~~~a~~iL~id~ii~~~~~  513 (513)
T 3iyg_B          482 ESFQVKRQVLLSAAEAAEVILRVDNIIKAAPR  513 (513)
T ss_pred             ecHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            99999999999999999999999999998774
>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis} Back     alignment and structure
>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A Back     alignment and structure
>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A Back     alignment and structure
>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B Back     alignment and structure
>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g* 4d8q_G* 4d8r_g* Back     alignment and structure
>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A* Back     alignment and structure
>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* 4d8q_A* 4d8r_a* Back     alignment and structure
>3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b* 4d8q_B* 4d8r_b* Back     alignment and structure
>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 4d8q_C* 4d8r_c* 2bbm_B 2bbn_B Back     alignment and structure
>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h* 4d8q_H* 4d8r_h* Back     alignment and structure
>3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d* 4d8q_D* 4d8r_d* Back     alignment and structure
>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f* 4d8q_F* 4d8r_f* Back     alignment and structure
>3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e* 4d8q_E* 4d8r_e* Back     alignment and structure
>3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii} Back     alignment and structure
>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a* Back     alignment and structure
>1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone; HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A 1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A 3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A 3cau_A ... Back     alignment and structure
>1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 Back     alignment and structure
>3rtk_A 60 kDa chaperonin 2; heat shock protein, chaperone; 2.80A {Mycobacterium tuberculosis} PDB: 1sjp_A Back     alignment and structure
>1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin, tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A Back     alignment and structure
>1ass_A Thermosome; chaperonin, HSP60, TCP1, groel, thermoplasma ACI ATP-binding; 2.30A {Thermoplasma acidophilum} SCOP: c.8.5.2 PDB: 1asx_A Back     alignment and structure
>3m6c_A 60 kDa chaperonin 1; chaperone, ATP-binding, nucleotide-binding; 2.20A {Mycobacterium tuberculosis} Back     alignment and structure
>3osx_A 60 kDa chaperonin; alpha, beta, apical domain, chaperone; 1.55A {Xenorhabdus nematophila} SCOP: c.8.5.1 PDB: 1kid_A 1fy9_A 1la1_A 1fya_A 1jon_A 1dk7_A 1dkd_A Back     alignment and structure
>1srv_A Protein (groel (HSP60 class)); chaperone, cell division, ATP-binding, phosphorylation; 1.70A {Thermus thermophilus} SCOP: c.8.5.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 522
d1gmla_168 c.8.5.2 (A:) Thermosome, A-domain {Mouse (Mus musc 1e-32
d1a6db2152 c.8.5.2 (B:216-367) Thermosome, A-domain {Archaeon 3e-32
d1q3qa2153 c.8.5.2 (A:217-369) Thermosome, A-domain {Archaeon 4e-32
d1assa_152 c.8.5.2 (A:) Thermosome, A-domain {Archaeon Thermo 6e-32
d1a6da1245 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domai 1e-31
d1a6da1245 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domai 1e-29
d1a6db1243 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domai 3e-27
d1a6db1243 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domai 4e-26
d1q3qa1258 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain 5e-25
d1q3qa1258 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain 1e-17
d1kp8a1252 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Esc 7e-21
d1a6db3107 d.56.1.2 (B:145-215,B:368-403) Thermosome, I domai 1e-18
d1q3qa3107 d.56.1.2 (A:146-216,A:370-405) Thermosome, I domai 1e-17
d1ioka1252 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Par 2e-17
d1ioka1252 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Par 9e-05
d1a6da3105 d.56.1.2 (A:146-214,A:368-403) Thermosome, I domai 5e-17
d1we3a1255 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {The 2e-16
d1we3a1255 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {The 4e-13
d1sjpa1180 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {My 1e-13
d1sjpa1180 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {My 6e-07
>d1gmla_ c.8.5.2 (A:) Thermosome, A-domain {Mouse (Mus musculus), gamma chain [TaxId: 10090]} Length = 168 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: GroEL apical domain-like
family: Group II chaperonin (CCT, TRIC), apical domain
domain: Thermosome, A-domain
species: Mouse (Mus musculus), gamma chain [TaxId: 10090]

 Score =  120 bits (301), Expect = 1e-32
 Identities = 33/169 (19%), Positives = 71/169 (42%), Gaps = 3/169 (1%)

Query: 201 DSFLDEGFILDKKI-GIGQPKRIENAKILVANTAMDTDKVKIYGARVRVDSMSKAAEIEG 259
           DS +  G +++K +      + I+N +I++ +++++  K +     + +        I  
Sbjct: 1   DSCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGES-QTDIEITREEDFTRILQ 59

Query: 260 AEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGG 319
            E++ + +  + II    +  +  + I +  +     A + AI         R+A   G 
Sbjct: 60  MEEEYIHQLCEDIIQLKPDVVITEKGISDLAQHYLMRANVTAIRRVRKTDNNRIARACGA 119

Query: 320 EIASTFDNP-ESVKLGHCKLIEEIMIGEDKLIHFSGVEMGQACTIVLRG 367
            I S  +   E        L+E   IG++     +  +  +ACTI+LRG
Sbjct: 120 RIVSRPEELREDDVGTGAGLLEIKKIGDEYFTFITDCKDPKACTILLRG 168
>d1a6db2 c.8.5.2 (B:216-367) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Length = 152 Back     information, alignment and structure
>d1q3qa2 c.8.5.2 (A:217-369) Thermosome, A-domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Length = 153 Back     information, alignment and structure
>d1assa_ c.8.5.2 (A:) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Length = 152 Back     information, alignment and structure
>d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Length = 245 Back     information, alignment and structure
>d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Length = 245 Back     information, alignment and structure
>d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Length = 243 Back     information, alignment and structure
>d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Length = 243 Back     information, alignment and structure
>d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Length = 258 Back     information, alignment and structure
>d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Length = 258 Back     information, alignment and structure
>d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia coli [TaxId: 562]} Length = 252 Back     information, alignment and structure
>d1a6db3 d.56.1.2 (B:145-215,B:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Length = 107 Back     information, alignment and structure
>d1q3qa3 d.56.1.2 (A:146-216,A:370-405) Thermosome, I domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Length = 107 Back     information, alignment and structure
>d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus denitrificans [TaxId: 266]} Length = 252 Back     information, alignment and structure
>d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus denitrificans [TaxId: 266]} Length = 252 Back     information, alignment and structure
>d1a6da3 d.56.1.2 (A:146-214,A:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Length = 105 Back     information, alignment and structure
>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]} Length = 255 Back     information, alignment and structure
>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]} Length = 255 Back     information, alignment and structure
>d1sjpa1 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Length = 180 Back     information, alignment and structure
>d1sjpa1 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Length = 180 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query522
d1a6db1243 Thermosome, E domain {Archaeon Thermoplasma acidop 100.0
d1a6da1245 Thermosome, E domain {Archaeon Thermoplasma acidop 100.0
d1q3qa1258 Thermosome, E domain {Archaeon Thermococcus sp. ks 100.0
d1we3a1255 GroEL, E domain {Thermus thermophilus [TaxId: 274] 100.0
d1gmla_168 Thermosome, A-domain {Mouse (Mus musculus), gamma 100.0
d1ioka1252 GroEL, E domain {Paracoccus denitrificans [TaxId: 99.97
d1kp8a1252 GroEL, E domain {Escherichia coli [TaxId: 562]} 99.97
d1q3qa2153 Thermosome, A-domain {Archaeon Thermococcus sp. ks 99.97
d1a6db2152 Thermosome, A-domain {Archaeon Thermoplasma acidop 99.97
d1assa_152 Thermosome, A-domain {Archaeon Thermoplasma acidop 99.96
d1sjpa1180 GroEL, E domain {Mycobacterium tuberculosis, GroEL 99.93
d1q3qa3107 Thermosome, I domain {Archaeon Thermococcus sp. ks 99.5
d1a6da3105 Thermosome, I domain {Archaeon Thermoplasma acidop 99.5
d1a6db3107 Thermosome, I domain {Archaeon Thermoplasma acidop 99.4
d1kida_193 GroEL, A domain {Escherichia coli [TaxId: 562]} 98.28
d1sjpa2184 GroEL, A domain {Mycobacterium tuberculosis, GroEL 98.19
d1srva_145 GroEL, A domain {Thermus thermophilus [TaxId: 274] 98.19
d1ioka2176 GroEL, A domain {Paracoccus denitrificans [TaxId: 98.18
d1we3a386 GroEL, I domain {Thermus thermophilus [TaxId: 274] 89.74
d1sjpa389 GroEL, I domain {Mycobacterium tuberculosis, GroEL 88.2
d1kp8a397 GroEL, I domain {Escherichia coli [TaxId: 562]} 87.61
d1ioka397 GroEL, I domain {Paracoccus denitrificans [TaxId: 87.11
d1ioka397 GroEL, I domain {Paracoccus denitrificans [TaxId: 83.86
>d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Back     information, alignment and structure
class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: Group II chaperonin (CCT, TRIC), ATPase domain
domain: Thermosome, E domain
species: Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]

Probab=100.00  E-value=6.6e-54  Score=410.88  Aligned_cols=239  Identities=40%  Similarity=0.647  Sum_probs=228.5

Q ss_pred             HHHHHHHHHHHHHHHHhhhcCCCCCCCcc-cC--CCeEEecChHHHhhhccccChHHHHHHHHHhhcccccCCCchhHHH
Q 009923           18 RARMASFVGAMAIADLVKTTLGPKGMSTG-RG--REVTVTNDGATILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVV   94 (522)
Q Consensus        18 ~~~~~~~~~~~~l~~~v~sslGP~G~~k~-~~--g~~~iTnDg~tIlk~l~~~hP~a~ll~~~~~~~~~~~GDGtts~vl   94 (522)
                      +++..|++||+.+++++++||||+|++|| .+  |++++||||+||++++.++||+++++.+++++|++++||||||+++
T Consensus         2 ~a~~~ni~a~~~i~~~v~~tlGP~g~~~~i~~~~g~~~iT~Dg~ti~~~~~~~~~~a~~~~~~~~~~~~~~GDGttt~~v   81 (243)
T d1a6db1           2 DAMKENIEAAIAISNSVRSSLGPRGMDKMLVDSLGDIVITNDGVTILKEMDVEHPAAKMMVEVSKTQDSFVGDGTTTAVI   81 (243)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTSSTTCCCEEEECTTCCEEEECCHHHHHHHSCCCSHHHHHHHHHHTCTTCCCTTHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHhCCcCCCCCeEEEECCCCCeEEecchhhHhhhhhccchHHHHHHHHHHHHHHHhhcCCcchHH
Confidence            78999999999999999999999999999 66  9999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhhcccccCCchhhhHHHHHHHHHHHhhccccchhhhHHHHHHH
Q 009923           95 LAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQLAV  174 (522)
Q Consensus        95 L~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~~la~lv~  174 (522)
                      |+++||+++.+++..|+||..|++||+.+++.+++.|++++.++...                                 
T Consensus        82 l~~~ll~~~~~~i~~G~~p~~I~~g~~~a~~~~~~~L~~~a~~v~~~---------------------------------  128 (243)
T d1a6db1          82 IAGGLLQQAQGLINQNVHPTVISEGYRMASEEAKRVIDEISTKIAYA---------------------------------  128 (243)
T ss_dssp             HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHCEECEEE---------------------------------
T ss_pred             HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccccccc---------------------------------
Confidence            99999999999999999999999999999999999888766553321                                 


Q ss_pred             HHHHhhcCCCCCcCeEEEEecCCCCcCcceeeeEEEeccCCCCCCccccCcceEEeecccccccccccCeEEEEcCHHHH
Q 009923          175 DAVMRLKGSTNLESIQIIKKPGGSLKDSFLDEGFILDKKIGIGQPKRIENAKILVANTAMDTDKVKIYGARVRVDSMSKA  254 (522)
Q Consensus       175 ~a~~~~~~~~~~~~I~i~~i~Gg~~~dS~l~~Givl~~~~~~~~~~~i~~~rIll~~~~L~~~~~~~~~~~~~i~~~~~l  254 (522)
                                                                                                      
T Consensus       129 --------------------------------------------------------------------------------  128 (243)
T d1a6db1         129 --------------------------------------------------------------------------------  128 (243)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHHHHHHHHHHHHHHHcCCcEEEeCCCCCchHHHHHHHcCCeEEecCChhhHHHHHHHhCCeeccccCCCCCCCcc
Q 009923          255 AEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGGEIASTFDNPESVKLG  334 (522)
Q Consensus       255 ~~l~~~e~~~l~~~~~~I~~~~v~lVl~~~~i~~~~~~~l~~~~I~~i~~v~~~~L~~ia~~tGa~ii~~~~~l~~~~lG  334 (522)
                                                                                                      
T Consensus       129 --------------------------------------------------------------------------------  128 (243)
T d1a6db1         129 --------------------------------------------------------------------------------  128 (243)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccceEEEEEEcCeEEEEEecccCCceEEEEecCCCHHHHHHHHHHHhHHHHHHHHHhhCCccccCCCchHHHHHHHHHHH
Q 009923          335 HCKLIEEIMIGEDKLIHFSGVEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVDEL  414 (522)
Q Consensus       335 ~~~~v~~~~ig~~~~~~~~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~~~~~~vvpGGG~~E~~la~~L~~~  414 (522)
                                                                                     ||||++|+.+|..|+++
T Consensus       129 ---------------------------------------------------------------~ggGa~e~~~a~~l~~~  145 (243)
T d1a6db1         129 ---------------------------------------------------------------AGGGATAAEIAFRLRSY  145 (243)
T ss_dssp             ---------------------------------------------------------------ETTTHHHHHHHHHHHHH
T ss_pred             ---------------------------------------------------------------cCCCchhHHHHHHHhhh
Confidence                                                                           06999999999999999


Q ss_pred             HhcCCChhHHHHHHHHHHHHHhHHHHHHhcCCCHHHHHHHHHHHHhcCCCceeEEcCCCcccccccCCcccchHHHHHHH
Q 009923          415 ARKTPGKKSHAIEAFSRALVAIPTTIADNAGLDSAELIAQLRAEHQKEGCPAGIDVISGSVGDMAELGISESFKVKQAVL  494 (522)
Q Consensus       415 ~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~l~~l~~~h~~~~~~~Gid~~~g~~~d~~~~gi~dp~~vk~~~l  494 (522)
                      ++++++++|+++++|++||+.||++|++|||+|+.+++.+|+..|.+++.++|+|+.+|++.||.+.|||||+.+|+++|
T Consensus       146 a~~~~g~~q~~i~~~a~Ale~ip~~LaeNaG~d~~~~i~~l~~~h~~~~~~~Gvd~~~g~i~d~~~~gV~dp~~vk~~ai  225 (243)
T d1a6db1         146 AQKIGGRQQLAIEKFADAIEEIPRALAENAGLDPIDILLKLRAEHAKGNKTYGINVFTGEIEDMVKNGVIEPIRVGKQAI  225 (243)
T ss_dssp             HHHTCSSHHHHHHHHHHHHTHHHHHHHHHHTCCHHHHHHHHHHHHHTTCTTEEEETTTTEEEETTTTTCEEEHHHHHHHH
T ss_pred             hhccCCHHHHHHHHHHHHhhccCccccccCCCChhHHHHHHHHHHhCCCCceeEECcCCEEeehHhcccEecHHHHHHHH
Confidence            99999999999999999999999999999999999999999999998999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhHHHh
Q 009923          495 LSATEAAEMILRVDEIIT  512 (522)
Q Consensus       495 ~~A~e~~~~iL~iD~iI~  512 (522)
                      +.|+|+|++|||||+||+
T Consensus       226 ~~A~e~a~~iL~iD~iis  243 (243)
T d1a6db1         226 ESATEAAIMILRIDDVIA  243 (243)
T ss_dssp             HHHHHHHHHHHHEEEEEC
T ss_pred             HHHHHHHHHHHHHHHhcC
Confidence            999999999999999874
>d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Back     information, alignment and structure
>d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Back     information, alignment and structure
>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1gmla_ c.8.5.2 (A:) Thermosome, A-domain {Mouse (Mus musculus), gamma chain [TaxId: 10090]} Back     information, alignment and structure
>d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1q3qa2 c.8.5.2 (A:217-369) Thermosome, A-domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Back     information, alignment and structure
>d1a6db2 c.8.5.2 (B:216-367) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Back     information, alignment and structure
>d1assa_ c.8.5.2 (A:) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Back     information, alignment and structure
>d1sjpa1 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Back     information, alignment and structure
>d1q3qa3 d.56.1.2 (A:146-216,A:370-405) Thermosome, I domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Back     information, alignment and structure
>d1a6da3 d.56.1.2 (A:146-214,A:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Back     information, alignment and structure
>d1a6db3 d.56.1.2 (B:145-215,B:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Back     information, alignment and structure
>d1kida_ c.8.5.1 (A:) GroEL, A domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1sjpa2 c.8.5.1 (A:189-372) GroEL, A domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Back     information, alignment and structure
>d1srva_ c.8.5.1 (A:) GroEL, A domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ioka2 c.8.5.1 (A:191-366) GroEL, A domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1we3a3 d.56.1.1 (A:139-189,A:374-408) GroEL, I domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1sjpa3 d.56.1.1 (A:135-188,A:373-407) GroEL, I domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Back     information, alignment and structure
>d1kp8a3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ioka3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1ioka3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure