Citrus Sinensis ID: 009925

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520--
MGALTSNRKRGDEYLNYQIPYQNLHISKRPRFNYTQQNQNQTLISSNSTVSRMSRYPEAKPPLKREVHAPCRTLKFGFADKSNQAFGSKKANGYGENQNLGIRMGNVLRYHLEKAKKSAFGAFRYFSKDKEVIDADNEQEKVEVISDDSSVEEIDAIEDGREGRSLVFDPRPRGSDENEKPVVDIGEIDGKSAEERNYHTNLQPSSSSVLTDTNNGDVSKMIDLLSLNGEMTVDVYKKLLQSVQKRGSKLKEIEFEIELNEKRWASLKQLWPLKKPEEEQVEELPREPFIPLTKEEEAAVERAFSANWRAVLVSHTETGIDITGKILQCLRPGAWLNDEVINVYLGLLKEREKREPQKFLKCHFFNTFFYNKLACGNKGYDFRAVKRWTSAKKLGYGLIECDKIFVPIHKQIHWCLAVIDRKDKKFQYLDSLKGRDKKVLGDLARYFVEEVRDKCGKDIDVSDWEQEFVLDLPEQANGFDCGMFMLKYVDFYSRGLGLCFDQSHMPYFRVRTAKEILRMRAD
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccccEEEccccHHHHHHccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHcccccccccccHHHHHHHHHHHccccccEEEccccccEEEEccccccccccccccHHHHHHHHHHHHHHHHccccccccEEEEcHHHHHHHccccccccHHHHHHHHHHccccccccccccEEEEEEccccEEEEEEEccccccEEccccccccHHHHHHHHHHHHHHHHHHcccccccccccEEccccccccccccccHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHcccc
ccEEEEcccccccccccccccccccccccccccccccccccccccccccccHcccccccccccccEccccccccccccccccccccccccccccccccccccHcccHHHHHHHHHHHHHHHHHHHcccccEEEEcccccccEEEEccccccEEEEEEcccccccccEccccccccccccccccccccccccccccccccccccccccEEEEEcccccccHHHcccccccHHcHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHccccccEEEEEEccEEEEcHHHHHHHcccccccHHHHHHHHHHHHHHcccccccccEEEEEEccEcHHHccccccccHHHHHHHHHHHHccccEccccEEEEEEEcccEEEEEEEEccccEEEEEEccccccHHHHHHHHHHHHHHHHHcccccccccccEEEcccccccccccccccHHHHHHHHHHHccccccccHHcHHHHHHHHHHHHHHHccc
mgaltsnrkrgdeylnyqipyqnlhiskrprfnytqqnqnqtlissnstvsrmsrypeakpplkrevhapcrtlkfgfadksnqafgskkangygenqnlgirMGNVLRYHLEKAKKSAFgafryfskdkevidadneqekvevisddssveeidaiedgregrslvfdprprgsdenekpvvdigeidgksaeernyhtnlqpssssvltdtnngdvSKMIDLLSLNGEMTVDVYKKLLQSVQKRGSKLKEIEFEIELNEKRWASLKQlwplkkpeeeqveelprepfipltkEEEAAVERAFSANWRAVLVSHTETGIDITGKIlqclrpgawlnDEVINVYLGLLKErekrepqkflkchffntffynklacgnkgydfraVKRWTSAKKLgygliecdkifvPIHKQIHWCLAVIDRKDKKFqyldslkgrdkkVLGDLARYFVEEVRDkcgkdidvsdweqefvldlpeqangfdcgmFMLKYVDFYsrglglcfdqshmpyfrVRTAKEILRMRAD
mgaltsnrkrgdeylNYQIPYQNLHISKRPRFNYTQQNQnqtlissnstvsrmSRYPEakpplkrevhAPCRTLKFGFADKSNQAfgskkangygenqnLGIRMGNVLRYHLEKAKKSAFGAFRYFSKDkevidadneqekvevisddssveeidaiedgregrslvfdprprgsdenekpvvdiGEIDGKSAEERNyhtnlqpssssvltdtnnGDVSKMIDLLSLNGEMTVDVYKKLLQSVQKRGSKLKEIEFEIELNEKRWASLKqlwplkkpeeeqveelprepfiplTKEEEAAVERAFSANWRAVLVSHtetgiditgKILQCLRPGAWLNDEVINVYLGLLKEREKREPQKFLKCHFFNTFFYNKLACGNKGYDFRAVKRWTSAKKLGYGLIECDKIFVPIHKQIHWCLAVIDRKDKKFQyldslkgrdkkvlgDLARYFVEEVRDKCGKDIDVSDWEQEFVLDLPEQANGFDCGMFMLKYVDFYSRGLGLcfdqshmpyfrVRTAKEILRMRAD
MGALTSNRKRGDEYLNYQIPYQNLHISKRPRFNYTQQNQNQTLISSNSTVSRMSRYPEAKPPLKREVHAPCRTLKFGFADKSNQAFGSKKANGYGENQNLGIRMGNVLRYHLEKAKKSAFGAFRYFSKDKEVIDADNEQEKVEVISDDSSVEEIDAIEDGREGRSLVFDPRPRGSDENEKPVVDIGEIDGKSAEERNYHTNLQPSSSSVLTDTNNGDVSKMIDLLSLNGEMTVDVYKKLLQSVQKRGSKLKEIEFEIELNEKRWASLKQLWplkkpeeeqveelprepFIPLTKEEEAAVERAFSANWRAVLVSHTETGIDITGKILQCLRPGAWLNDEVINVYLGLLKEREKREPQKFLKCHFFNTFFYNKLACGNKGYDFRAVKRWTSAKKLGYGLIECDKIFVPIHKQIHWCLAVIDRKDKKFQYLDSLKGRDKKVLGDLARYFVEEVRDKCGKDIDVSDWEQEFVLDLPEQANGFDCGMFMLKYVDFYSRGLGLCFDQSHMPYFRVRTAKEILRMRAD
*************YLNYQIPYQNLHIS*******************************************CRTLKFGFA**************YGENQNLGIRMGNVLRYHLEKAKKSAFGAFRYFSKDK*****************************************************************************************KMIDLLSLNGEMTVDVYKKLLQSVQKRGSKLKEIEFEIELNEKRWASLKQLWPL************************AAVERAFSANWRAVLVSHTETGIDITGKILQCLRPGAWLNDEVINVYLGLLKEREKREPQKFLKCHFFNTFFYNKLACGNKGYDFRAVKRWTSAKKLGYGLIECDKIFVPIHKQIHWCLAVIDRKDKKFQYLDSLKGRDKKVLGDLARYFVEEVRDKCGKDIDVSDWEQEFVLDLPEQANGFDCGMFMLKYVDFYSRGLGLCFDQSHMPYFRVRTAKEI******
****************************************************************************************************************************************************************************************************************************************************************************************************TKEEEAAVERAFSANWRAVLVSHTETGIDITGKILQCLRPGAWLNDEVINVYLGLLKEREKREPQKFLKCHFFNTFFYNKLACGN**YDFRAVKRWTSAKKLGYGLIECDKIFVPIHKQIHWCLAVIDRKDKKFQYLDSLKGRDKKVLGDLARYFVEEVRDKCGKDIDVSDWEQEFVLDLPEQANGFDCGMFMLKYVDFYSRGLGLCFDQSHMPYFRVRTAKEILRMRA*
********KRGDEYLNYQIPYQNLHISKRPRFNYTQQNQNQTLISSNSTVSRMSRYPEAKPPLKREVHAPCRTLKFGFADKSNQAFGSKKANGYGENQNLGIRMGNVLRYHLEKAKKSAFGAFRYFSKDKEVIDADNEQEKVEVISDDSSVEEIDAIEDGREGRSLVFDPRPRGSDENEKPVVDIGEIDGKSAEERNYHTNLQPSSSSVLTDTNNGDVSKMIDLLSLNGEMTVDVYKKLLQSVQKRGSKLKEIEFEIELNEKRWASLKQLWPLKK*********PREPFIPLTKEEEAAVERAFSANWRAVLVSHTETGIDITGKILQCLRPGAWLNDEVINVYLGLLKEREKREPQKFLKCHFFNTFFYNKLACGNKGYDFRAVKRWTSAKKLGYGLIECDKIFVPIHKQIHWCLAVIDRKDKKFQYLDSLKGRDKKVLGDLARYFVEEVRDKCGKDIDVSDWEQEFVLDLPEQANGFDCGMFMLKYVDFYSRGLGLCFDQSHMPYFRVRTAKEILRMRAD
*********RGDEYLNYQIPYQNLHI********************************AKPPLKREVHAPCRTLKF************************GIRMGNVLRYHLEKAKKSAFGAFRYFSKDKEVIDADNEQEKVEVISDDSSVEEIDAIEDG********************************************SSSSVLTDTNNGDVSKMIDLLSLNGEMTVDVYKKLLQSVQKRGSKLKEIEFEIELNEKRWASLKQLWPLKKP********PREPFIPLTKEEEAAVERAFSANWRAVLVSHTETGIDITGKILQCLRPGAWLNDEVINVYLGLLKEREKREPQKFLKCHFFNTFFYNKLACGNKGYDFRAVKRWTSAKKLGYGLIECDKIFVPIHKQIHWCLAVIDRKDKKFQYLDSLKGRDKKVLGDLARYFVEEVRDKCGKDIDVSDWEQEFVLDLPEQANGFDCGMFMLKYVDFYSRGLGLCFDQSHMPYFRVRTAKEILRMRA*
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MGALTSNRKRGDEYLNYQIPYQNLHISKRPRFNYTQQNQNQTLISSNSTVSRMSRYPEAKPPLKREVHAPCRTLKFGFADKSNQAFGSKKANGYGENQNLGIRMGNVLRYHLEKAKKSAFGAFRYFSKDKEVIDADNEQEKVEVISDDSSVEEIDAIEDGREGRSLVFDPRPRGSDENEKPVVDIGEIDGKSAEERNYHTNLQPSSSSVLTDTNNGDVSKMIDLLSLNGEMTVDVYKKLLQSVQKRGSKLKEIEFEIELNEKRWASLKQLWPLKKPEEEQVEELPREPFIPLTKEEEAAVERAFSANWRAVLVSHTETGIDITGKILQCLRPGAWLNDEVINVYLGLLKEREKREPQKFLKCHFFNTFFYNKLACGNKGYDFRAVKRWTSAKKLGYGLIECDKIFVPIHKQIHWCLAVIDRKDKKFQYLDSLKGRDKKVLGDLARYFVEEVRDKCGKDIDVSDWEQEFVLDLPEQANGFDCGMFMLKYVDFYSRGLGLCFDQSHMPYFRVRTAKEILRMRAD
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query522 2.2.26 [Sep-21-2011]
Q94F30489 Ubiquitin-like-specific p yes no 0.898 0.959 0.494 1e-138
Q8GYL3502 Ubiquitin-like-specific p no no 0.833 0.866 0.482 1e-118
O65278341 Putative ubiquitin-like-s no no 0.469 0.718 0.588 2e-83
O42957568 Ubiquitin-like-specific p yes no 0.434 0.399 0.381 2e-38
P59110640 Sentrin-specific protease no no 0.415 0.339 0.396 3e-36
Q9HC62589 Sentrin-specific protease yes no 0.417 0.370 0.376 3e-36
Q5R7K7589 Sentrin-specific protease yes no 0.417 0.370 0.376 8e-36
Q9P0U3644 Sentrin-specific protease no no 0.415 0.336 0.392 1e-35
Q5RBB1645 Sentrin-specific protease no no 0.415 0.336 0.392 1e-35
Q91ZX6588 Sentrin-specific protease no no 0.360 0.319 0.4 2e-35
>sp|Q94F30|ESD4_ARATH Ubiquitin-like-specific protease ESD4 OS=Arabidopsis thaliana GN=ESD4 PE=1 SV=1 Back     alignment and function desciption
 Score =  492 bits (1266), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 268/542 (49%), Positives = 344/542 (63%), Gaps = 73/542 (13%)

Query: 1   MGALTSNRKRGDEYLNY-----QIPYQN---LHISKRPRFNYTQQNQNQTLISSNSTVSR 52
           MGA+  NRKR DE  N+       P +N      SK+ RF++     +    SSN T+SR
Sbjct: 1   MGAVAINRKRSDESFNFINQQSTNPLRNSPYFQASKKRRFSFAMSEDSGKPASSNPTISR 60

Query: 53  MSRYPEAKPPLKREVHAPCRTLKFGFADKSNQAFGSKKANGYGENQNLGIRMGNVLRYHL 112
           +SRYP+AK PL+RE+HAP R +           +G  K+N Y E         N      
Sbjct: 61  ISRYPDAKAPLRREIHAPSRGI---------LRYGKAKSNDYCEKD------ANFFVRKY 105

Query: 113 EKAKKSAFGAFRYFSKDKEVIDADNEQEKVEVISDDSSVEEIDAIEDGREGRSLVFDPRP 172
           + AK+SA  A R+ +K K+ +D  +E EK EV+SDDSSV+ I+ I+              
Sbjct: 106 DDAKRSALEALRFVNKGKDFVDLGDEVEKEEVVSDDSSVQAIEVID-------------- 151

Query: 173 RGSDENEKPVVDIGEIDGKSAEERNYHTNLQPSSSSVLTDTNNG------DVSKMIDLLS 226
              D+ EK                    NLQPS SS +TD   G      D S M+D LS
Sbjct: 152 -CDDDEEK-------------------KNLQPSFSSGVTDVKKGENFRVEDTSMMLDSLS 191

Query: 227 L-----NGEMTVDVYKKLLQSVQKRGSKLKEIEFEIELNEKRWASLKQLWPLKKPEEEQV 281
           L     N   +++ Y+KL+QS +KR SKL+ + FEI LNEK+ + L+Q  P  K  E++V
Sbjct: 192 LDRDVDNDASSLEAYRKLMQSAEKRNSKLEALGFEIVLNEKKLSLLRQSRP--KTVEKRV 249

Query: 282 EELPREPFIPLTKEEEAAVERAFSA-NWRAVLVSHTETGIDITGKILQCLRPGAWLNDEV 340
           E +PREPFIPLT++EEA V RAFS  N R VL +H  + IDITG++LQCL P AWLNDEV
Sbjct: 250 E-VPREPFIPLTEDEEAEVYRAFSGRNRRKVLATHENSNIDITGEVLQCLTPSAWLNDEV 308

Query: 341 INVYLGLLKEREKREPQKFLKCHFFNTFFYNKLACGNKGYDFRAVKRWTSAKKLGYGLIE 400
           INVYL LLKERE REP+K+LKCH+FNTFFY KL   + GY+F+AV+RWT+ +KLGY LI+
Sbjct: 309 INVYLELLKERETREPKKYLKCHYFNTFFYKKLV-SDSGYNFKAVRRWTTQRKLGYALID 367

Query: 401 CDKIFVPIHKQIHWCLAVIDRKDKKFQYLDSLKGRDKKVLGDLARYFVEEVRDKCGKDID 460
           CD IFVPIH+ +HW LAVI+ ++ K  YLDSL G D  +L  LA+Y  +E  +K GK ID
Sbjct: 368 CDMIFVPIHRGVHWTLAVINNRESKLLYLDSLNGVDPMILNALAKYMGDEANEKSGKKID 427

Query: 461 VSDWEQEFVLDLPEQANGFDCGMFMLKYVDFYSRGLGLCFDQSHMPYFRVRTAKEILRMR 520
            + W+ EFV DLP+Q NG+DCGMFMLKY+DF+SRGLGLCF Q HMPYFR+RTAKEILR+R
Sbjct: 428 ANSWDMEFVEDLPQQKNGYDCGMFMLKYIDFFSRGLGLCFSQEHMPYFRLRTAKEILRLR 487

Query: 521 AD 522
           AD
Sbjct: 488 AD 489
Protease that catalyzes two essential functions in the SUMO pathway: processing of full-length SUMOs to their mature forms and deconjugation of SUMO from targeted proteins. Cleaves precursors of SUM1 and SUM2, but not of SUM3 or SUM5. Able to release SUM1 and SUM2 from conjugates, but unable to cleave SUM3. Acts predominantly as an isopeptidase, cleaving SUMO-conjugated proteins better than SUMO peptides. Plays an important role in the control of flowering time.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: 2EC: 2EC: .EC: 6EC: 8
>sp|Q8GYL3|ULP1A_ARATH Ubiquitin-like-specific protease 1A OS=Arabidopsis thaliana GN=ULP1A PE=2 SV=2 Back     alignment and function description
>sp|O65278|ULP1B_ARATH Putative ubiquitin-like-specific protease 1B OS=Arabidopsis thaliana GN=ULP1B PE=5 SV=2 Back     alignment and function description
>sp|O42957|ULP1_SCHPO Ubiquitin-like-specific protease 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ulp1 PE=3 SV=1 Back     alignment and function description
>sp|P59110|SENP1_MOUSE Sentrin-specific protease 1 OS=Mus musculus GN=Senp1 PE=2 SV=1 Back     alignment and function description
>sp|Q9HC62|SENP2_HUMAN Sentrin-specific protease 2 OS=Homo sapiens GN=SENP2 PE=1 SV=3 Back     alignment and function description
>sp|Q5R7K7|SENP2_PONAB Sentrin-specific protease 2 OS=Pongo abelii GN=SENP2 PE=2 SV=1 Back     alignment and function description
>sp|Q9P0U3|SENP1_HUMAN Sentrin-specific protease 1 OS=Homo sapiens GN=SENP1 PE=1 SV=2 Back     alignment and function description
>sp|Q5RBB1|SENP1_PONAB Sentrin-specific protease 1 OS=Pongo abelii GN=SENP1 PE=2 SV=1 Back     alignment and function description
>sp|Q91ZX6|SENP2_MOUSE Sentrin-specific protease 2 OS=Mus musculus GN=Senp2 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query522
359477277528 PREDICTED: ubiquitin-like-specific prote 0.978 0.967 0.580 1e-165
255551763492 sentrin/sumo-specific protease, putative 0.917 0.973 0.557 1e-158
449460961501 PREDICTED: ubiquitin-like-specific prote 0.936 0.976 0.558 1e-158
224114894516 predicted protein [Populus trichocarpa] 0.954 0.965 0.570 1e-156
356519964512 PREDICTED: ubiquitin-like-specific prote 0.959 0.978 0.536 1e-149
224110442532 predicted protein [Populus trichocarpa] 0.948 0.930 0.554 1e-145
356564595500 PREDICTED: ubiquitin-like-specific prote 0.938 0.98 0.531 1e-144
297736850556 unnamed protein product [Vitis vinifera] 0.875 0.821 0.539 1e-143
297804638499 hypothetical protein ARALYDRAFT_493298 [ 0.917 0.959 0.498 1e-138
18414542489 ubiquitin-like-specific protease ESD4 [A 0.898 0.959 0.494 1e-136
>gi|359477277|ref|XP_002275739.2| PREDICTED: ubiquitin-like-specific protease ESD4-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  588 bits (1517), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 313/539 (58%), Positives = 394/539 (73%), Gaps = 28/539 (5%)

Query: 1   MGALTSNRKRGDE--YLNYQI--PY-QNL------HISKRPRFNYTQQNQNQTLISSNST 49
           MGALTSNRKRGDE   LN+    PY Q+L      HISK+PR +   Q  +   +SS ST
Sbjct: 1   MGALTSNRKRGDECFTLNHTFLSPYPQDLDRRIDSHISKKPRLSSMPQTPDPA-VSSRST 59

Query: 50  VSRMSRYPEAKPPLKREVHAPCRTLKFGFADKSNQAFGSKKANGYGENQNLGIRMGNVLR 109
            SR+ RYPE    L+REVHAPCR +KFGFA  SN+     +     E   L   MGNVL 
Sbjct: 60  ASRIQRYPEPTAKLRREVHAPCRVVKFGFAASSNRE-SRLRIGEVDEKVGLSNVMGNVLS 118

Query: 110 YHLEKAKKSAFGAFRYFSKDKEVIDADNEQEKVEVISDDSSVEEIDAIEDGREGRSLVFD 169
              EKAK +A  A RYF KDKEVID  NE+ + ++ S+DSS+EEI+A+EDGREGRS+V D
Sbjct: 119 SQYEKAKNTAIQALRYFRKDKEVIDVGNERGE-DLASEDSSIEEIEAVEDGREGRSVVSD 177

Query: 170 PRPRGSDENEKPVVDIGEIDGKSAEERNYHTNLQPSSSSVLTDTNNGDVSKMIDLLSL-- 227
            R RG+D    P  DI E+     E +N+   L  SSSS +T+ +N ++ KM+D L+L  
Sbjct: 178 ERSRGADGAAVP--DIQEL-----ETKNFDRRLWQSSSSGVTELSNVNL-KMLDSLTLRE 229

Query: 228 -NGEMTVDVYKKLLQSVQKRGSKLKEIEFEIELNEKRWASLKQLWPLKKPEEEQV--EEL 284
            + E+ V  +KK L S +KR SKL+++  +I+  E + +SL  L P KKPEE +   +E+
Sbjct: 230 TDVELGVLPHKKWLDSAEKRNSKLRDLSVQIKFLEAQRSSLHALRPAKKPEEVKFNFQEV 289

Query: 285 PREPFIPLTKEEEAAVERAFSA-NWRAVLVSHTETGIDITGKILQCLRPGAWLNDEVINV 343
           PREPF+PLT+EEEA V+RA S+ N R VLV+H  + I+ITG+ILQCL+P AWLNDEVINV
Sbjct: 290 PREPFLPLTQEEEAEVDRALSSINRRKVLVTHEISNIEITGEILQCLQPTAWLNDEVINV 349

Query: 344 YLGLLKEREKREPQKFLKCHFFNTFFYNKLACGNKGYDFRAVKRWTSAKKLGYGLIECDK 403
           YL LLKEREKREP+KFLKCHFFNTFFY KL  G   YD+++V+RWT+ +KLGY L ECDK
Sbjct: 350 YLELLKEREKREPKKFLKCHFFNTFFYKKLISGRNSYDYKSVRRWTTQRKLGYSLSECDK 409

Query: 404 IFVPIHKQIHWCLAVIDRKDKKFQYLDSLKGRDKKVLGDLARYFVEEVRDKCGKDIDVSD 463
           IFVPIH++IHWCLAVI+++DKKFQYLDSLKG D +VL  LARY+V+EV+DK  KDID+S 
Sbjct: 410 IFVPIHQEIHWCLAVINKQDKKFQYLDSLKGMDTRVLKVLARYYVDEVKDKSEKDIDLSS 469

Query: 464 WEQEFVLDLPEQANGFDCGMFMLKYVDFYSRGLGLCFDQSHMPYFRVRTAKEILRMRAD 522
           WEQE+V DLPEQ NG+DCGMFM+KY DFYSRG+ LCF+Q HMPYFR+RTAKEIL+++AD
Sbjct: 470 WEQEYVEDLPEQKNGYDCGMFMIKYADFYSRGIELCFNQEHMPYFRLRTAKEILKLKAD 528

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255551763|ref|XP_002516927.1| sentrin/sumo-specific protease, putative [Ricinus communis] gi|223544015|gb|EEF45541.1| sentrin/sumo-specific protease, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449460961|ref|XP_004148212.1| PREDICTED: ubiquitin-like-specific protease ESD4-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224114894|ref|XP_002332256.1| predicted protein [Populus trichocarpa] gi|222832021|gb|EEE70498.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356519964|ref|XP_003528638.1| PREDICTED: ubiquitin-like-specific protease ESD4-like [Glycine max] Back     alignment and taxonomy information
>gi|224110442|ref|XP_002315520.1| predicted protein [Populus trichocarpa] gi|222864560|gb|EEF01691.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356564595|ref|XP_003550537.1| PREDICTED: ubiquitin-like-specific protease ESD4-like [Glycine max] Back     alignment and taxonomy information
>gi|297736850|emb|CBI26051.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|297804638|ref|XP_002870203.1| hypothetical protein ARALYDRAFT_493298 [Arabidopsis lyrata subsp. lyrata] gi|297316039|gb|EFH46462.1| hypothetical protein ARALYDRAFT_493298 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|18414542|ref|NP_567478.1| ubiquitin-like-specific protease ESD4 [Arabidopsis thaliana] gi|75165506|sp|Q94F30.1|ESD4_ARATH RecName: Full=Ubiquitin-like-specific protease ESD4; AltName: Full=Protein EARLY IN SHORT DAYS 4; Short=AtESD4 gi|14423394|gb|AAK62379.1|AF386934_1 Unknown protein [Arabidopsis thaliana] gi|20148439|gb|AAM10110.1| unknown protein [Arabidopsis thaliana] gi|332658261|gb|AEE83661.1| ubiquitin-like-specific protease ESD4 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query522
TAIR|locus:2077632502 ULP1A "UB-like protease 1A" [A 0.704 0.733 0.509 5.1e-106
TAIR|locus:2130864489 ESD4 "EARLY IN SHORT DAYS 4" [ 0.703 0.750 0.516 2.4e-99
DICTYBASE|DDB_G0292290769 DDB_G0292290 "Sentrin-specific 0.739 0.501 0.299 9e-41
UNIPROTKB|F1SGU9628 SENP1 "Uncharacterized protein 0.421 0.350 0.391 1.1e-40
UNIPROTKB|Q9P0U3644 SENP1 "Sentrin-specific protea 0.419 0.340 0.398 1.1e-40
RGD|1303230475 Senp18 "Sumo1/sentrin/SMT3 spe 0.409 0.450 0.405 1.7e-40
RGD|2324522475 LOC100362532 "Sumo1/sentrin/SM 0.409 0.450 0.405 1.7e-40
UNIPROTKB|Q5RBB1645 SENP1 "Sentrin-specific protea 0.419 0.339 0.398 1.8e-40
RGD|1303080475 Senp17 "Sumo1/sentrin/SMT3 spe 0.409 0.450 0.400 3.6e-40
POMBASE|SPBC19G7.09568 ulp1 "SUMO deconjugating enzym 0.365 0.336 0.410 6.4e-39
TAIR|locus:2077632 ULP1A "UB-like protease 1A" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 933 (333.5 bits), Expect = 5.1e-106, Sum P(2) = 5.1e-106
 Identities = 190/373 (50%), Positives = 244/373 (65%)

Query:   152 EEIDAIEDGREGRSLVFDPRPRGSDENEKPVVDIGEIDGKSAEERNYHTNLQPSSSSVLT 211
             E ID ++D      ++ D   R   EN    VD  E++ K+       + +    +  L 
Sbjct:   133 EVID-VDDELGDVEMISDDTSREGVENVAMEVD--EVEEKAEMGNGLFSEVASLKNGSLR 189

Query:   212 --DTNNGDVSKMIDLLSLNGEMTVDVYKKLLQSVQKRGSKLKEIEFEIELNEKRWASLKQ 269
               + +  + S ++    +    + + Y+K+L+S   R SKLK+  F     E+  A L+ 
Sbjct:   190 VGECSKANSSSLVVNRPVTDVTSFEAYRKVLESAVNRTSKLKDRGFVDFFKERGRALLRS 249

Query:   270 LWXXXXXXXXXXXXXXXXXFIPLTKEEEAAVERAFSANWRAVLVSHTETGIDITGKILQC 329
             L                  F+PL++EEE AV RAFSAN   +LV+H  + IDITGKIL+C
Sbjct:   250 LSSFWRQDEEPVEVVQREAFVPLSREEETAVRRAFSANDSNILVTHKNSNIDITGKILRC 309

Query:   330 LRPGAWLNDEVINVYLGLLKEREKREPQKFLKCHFFNTFFYNKLACGNKGYDFRAVKRWT 389
             L+PG WLNDEVIN+Y+ LLKERE REP+KFLKCHFFNTFF+ KL     GY++ AV+RWT
Sbjct:   310 LKPGKWLNDEVINLYMVLLKEREAREPKKFLKCHFFNTFFFTKLVNSATGYNYGAVRRWT 369

Query:   390 SAKKLGYGLIECDKIFVPIHKQIHWCLAVIDRKDKKFQYLDSLKGRDKKVLGDLARYFVE 449
             S K+LGY L +CDKIF+PIH  IHW LAVI+ KD+KFQYLDS KGR+ K+L  LARYFV+
Sbjct:   370 SMKRLGYHLKDCDKIFIPIHMNIHWTLAVINIKDQKFQYLDSFKGREPKILDALARYFVD 429

Query:   450 EVRDKCGKDIDVSDWEQEFVLDLPEQANGFDCGMFMLKYVDFYSRGLGLCFDQSHMPYFR 509
             EVRDK   D+DVS W QEFV DLP Q NGFDCGMFM+KY+DFYSRGL LCF Q  MPYFR
Sbjct:   430 EVRDKSEVDLDVSRWRQEFVQDLPMQRNGFDCGMFMVKYIDFYSRGLDLCFTQEQMPYFR 489

Query:   510 VRTAKEILRMRAD 522
              RTAKEIL+++A+
Sbjct:   490 ARTAKEILQLKAE 502
GO:0005634 "nucleus" evidence=ISM
GO:0006508 "proteolysis" evidence=IEA;ISS
GO:0008234 "cysteine-type peptidase activity" evidence=IEA;ISS
GO:0016926 "protein desumoylation" evidence=IDA
GO:0016929 "SUMO-specific protease activity" evidence=IDA
GO:0009506 "plasmodesma" evidence=IDA
GO:0009640 "photomorphogenesis" evidence=RCA
GO:0010388 "cullin deneddylation" evidence=RCA
GO:0016567 "protein ubiquitination" evidence=RCA
GO:0016571 "histone methylation" evidence=RCA
GO:0016579 "protein deubiquitination" evidence=RCA
GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA
TAIR|locus:2130864 ESD4 "EARLY IN SHORT DAYS 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0292290 DDB_G0292290 "Sentrin-specific protease 1" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|F1SGU9 SENP1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q9P0U3 SENP1 "Sentrin-specific protease 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|1303230 Senp18 "Sumo1/sentrin/SMT3 specific peptidase 18" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
RGD|2324522 LOC100362532 "Sumo1/sentrin/SMT3 specific peptidase 18-like" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q5RBB1 SENP1 "Sentrin-specific protease 1" [Pongo abelii (taxid:9601)] Back     alignment and assigned GO terms
RGD|1303080 Senp17 "Sumo1/sentrin/SMT3 specific peptidase 17" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
POMBASE|SPBC19G7.09 ulp1 "SUMO deconjugating enzyme Ulp1" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q94F30ESD4_ARATH3, ., 4, ., 2, 2, ., 6, 80.49440.89840.9591yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.220.691
3rd Layer3.4.22.68LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query522
PLN03189490 PLN03189, PLN03189, Protease specific for SMALL UB 0.0
COG5160578 COG5160, ULP1, Protease, Ulp1 family [Posttranslat 6e-42
pfam02902216 pfam02902, Peptidase_C48, Ulp1 protease family, C- 1e-37
>gnl|CDD|215622 PLN03189, PLN03189, Protease specific for SMALL UBIQUITIN-RELATED MODIFIER (SUMO); Provisional Back     alignment and domain information 
 Score =  665 bits (1717), Expect = 0.0
 Identities = 315/536 (58%), Positives = 375/536 (69%), Gaps = 60/536 (11%)

Query: 1   MGALTSNRKRGDEYLNYQIPYQN---LHISKRPRFNYTQQNQNQTLISSNSTVSRMSRYP 57
           MGALTSN KR DE  N   P  N    HISK+PRF+  Q   +    SSNST SR+SRYP
Sbjct: 1   MGALTSNHKRSDECFNN--PLSNSPDFHISKKPRFSMAQTPDSGNQHSSNSTASRISRYP 58

Query: 58  EAKPPLKREVHAPCRTLKFGFADKSNQAFGSKKANGYGENQNLGIRMGNVLRYHLEKAKK 117
           E K PL+REVHAPCR LKFG  DKS      KK       Q LG  MGN L    + AK+
Sbjct: 59  EVKSPLRREVHAPCRILKFG-RDKSTD-SSEKK-------QGLGNVMGNFLSRKYDMAKR 109

Query: 118 SAFGAFRYFSKDKEVIDADNEQEKVEVISDDSSVEEIDAIEDGREGRSLVFDPRPRGSDE 177
           SA  A RY+ KDKEV+D  +E  KVE+ISDDSS+EE++A+E                   
Sbjct: 110 SALDALRYYRKDKEVVDVGDELGKVEMISDDSSIEEVEAVEM------------------ 151

Query: 178 NEKPVVDIGEIDGKSAEERNYHTNLQPS-SSSVLTDTNNG-----DVSKMIDLLSLNG-- 229
                      D    EE+     +    SS V   T NG     D SKM+D L LN   
Sbjct: 152 -----------DVDEVEEKA---EMGNGLSSDVKIVTKNGNLRVEDTSKMLDSLVLNRPE 197

Query: 230 --EMTVDVYKKLLQSVQKRGSKLKEIEFEIELNEKRWASLKQLWPLKKPEEEQVEELPRE 287
              ++V+ Y+KLLQS ++R SKLK++ FEIELNEKR +SL+Q  P     +E VEE+PRE
Sbjct: 198 TDVLSVEAYRKLLQSAERRNSKLKDLGFEIELNEKRLSSLRQSRP---KPKEPVEEVPRE 254

Query: 288 PFIPLTKEEEAAVERAFSAN-WRAVLVSHTETGIDITGKILQCLRPGAWLNDEVINVYLG 346
           PFIPLT+EEE  V+RAFSAN  R VLV+H  + IDITG+IL+CL+PGAWLNDEVIN+YL 
Sbjct: 255 PFIPLTREEETEVKRAFSANNRRKVLVTHENSNIDITGEILRCLKPGAWLNDEVINLYLE 314

Query: 347 LLKEREKREPQKFLKCHFFNTFFYNKLACGNKGYDFRAVKRWTSAKKLGYGLIECDKIFV 406
           LLKERE REP+KFLKCHFFNTFFY KL  G  GYD++AV+RWT+ KKLGY LI+CDKIFV
Sbjct: 315 LLKEREAREPKKFLKCHFFNTFFYKKLVSGKSGYDYKAVRRWTTQKKLGYHLIDCDKIFV 374

Query: 407 PIHKQIHWCLAVIDRKDKKFQYLDSLKGRDKKVLGDLARYFVEEVRDKCGKDIDVSDWEQ 466
           PIH++IHW LAVI++KD+KFQYLDSLKGRD K+L  LA+Y+V+EV+DK  KDIDVS WEQ
Sbjct: 375 PIHQEIHWTLAVINKKDQKFQYLDSLKGRDPKILDALAKYYVDEVKDKSEKDIDVSSWEQ 434

Query: 467 EFVLDLPEQANGFDCGMFMLKYVDFYSRGLGLCFDQSHMPYFRVRTAKEILRMRAD 522
           EFV DLPEQ NG+DCGMFM+KY+DFYSRGLGLCF Q HMPYFR+RTAKEILR++AD
Sbjct: 435 EFVEDLPEQKNGYDCGMFMIKYIDFYSRGLGLCFGQEHMPYFRLRTAKEILRLKAD 490

Length = 490
>gnl|CDD|227489 COG5160, ULP1, Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|217278 pfam02902, Peptidase_C48, Ulp1 protease family, C-terminal catalytic domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 522
PLN03189490 Protease specific for SMALL UBIQUITIN-RELATED MODI 100.0
KOG0778511 consensus Protease, Ulp1 family [Posttranslational 100.0
COG5160578 ULP1 Protease, Ulp1 family [Posttranslational modi 100.0
PF02902216 Peptidase_C48: Ulp1 protease family, C-terminal ca 100.0
KOG3246223 consensus Sentrin-specific cysteine protease (Ulp1 99.91
KOG0779595 consensus Protease, Ulp1 family [Posttranslational 99.45
PF03290423 Peptidase_C57: Vaccinia virus I7 processing peptid 97.38
PRK14848317 deubiquitinase SseL; Provisional 96.7
PRK11836403 deubiquitinase; Provisional 95.71
PF00770183 Peptidase_C5: Adenovirus endoprotease; InterPro: I 94.78
>PLN03189 Protease specific for SMALL UBIQUITIN-RELATED MODIFIER (SUMO); Provisional Back     alignment and domain information 
Probab=100.00  E-value=4.3e-130  Score=1030.57  Aligned_cols=482  Identities=63%  Similarity=1.040  Sum_probs=443.0

Q ss_pred             CCcccccCCCCCccc-ccCCCCCCccccCCCCcccccccCCc-ccCcccccccccccCCCCCCcccccccCCcccccccc
Q 009925            1 MGALTSNRKRGDEYL-NYQIPYQNLHISKRPRFNYTQQNQNQ-TLISSNSTVSRMSRYPEAKPPLKREVHAPCRTLKFGF   78 (522)
Q Consensus         1 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (522)
                      |||||+|+||+++|+ |+++++|+||+||+|||| |+|++.. ..+||||||||||||||+|+||||||||||||+||| 
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   78 (490)
T PLN03189          1 MGALTSNHKRSDECFNNPLSNSPDFHISKKPRFS-MAQTPDSGNQHSSNSTASRISRYPEVKSPLRREVHAPCRILKFG-   78 (490)
T ss_pred             CCcccccccccccccccccccCCccccccCCCcc-ccccccccCCccccccccchhcCCCccchhhhhhcCchhhhhcc-
Confidence            999999999999999 679999999999999999 4555411 128999999999999999999999999999999999 


Q ss_pred             cccccccccccccCCCCccc-ccccchhhHHHHhHHHHHhhhhhcccccccCceeeecCccccceeeeccCcchhhhhhh
Q 009925           79 ADKSNQAFGSKKANGYGENQ-NLGIRMGNVLRYHLEKAKKSAFGAFRYFSKDKEVIDADNEQEKVEVISDDSSVEEIDAI  157 (522)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (522)
                               ++|+++++++. ++||+|||||++|||+||++||+|+||++|||||||||||.|++++||||||||||+||
T Consensus        79 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (490)
T PLN03189         79 ---------RDKSTDSSEKKQGLGNVMGNFLSRKYDMAKRSALDALRYYRKDKEVVDVGDELGKVEMISDDSSIEEVEAV  149 (490)
T ss_pred             ---------cccccchhhhhcchhhhHHHHhhhhhHHHHHHHHHHHHHHhcCCeeeecccccccceeccCccchhhhhee
Confidence                     99999999887 79999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccccCcccccCCCCCCCCCCCCCccccccccccccccccccCCCCCCCccccccCcccchHhhhhcccccc----ccCH
Q 009925          158 EDGREGRSLVFDPRPRGSDENEKPVVDIGEIDGKSAEERNYHTNLQPSSSSVLTDTNNGDVSKMIDLLSLNG----EMTV  233 (522)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~  233 (522)
                      |.+..+    ..++..++.+      +.++|..+     +++|++           +|.++++||+||+|++    ++++
T Consensus       150 ~~~~~~----~~~~~~~~~~------~~~~~~~~-----~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~  203 (490)
T PLN03189        150 EMDVDE----VEEKAEMGNG------LSSDVKIV-----TKNGNL-----------RVEDTSKMLDSLVLNRPETDVLSV  203 (490)
T ss_pred             ecccch----hhhccccCcc------ccccceEe-----ecCCcc-----------cccchhhhhhceeecCcccccccc
Confidence            954422    1222233333      23555554     789999           9999999999999998    8999


Q ss_pred             HHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhcCCCCCCchhhhhcCCCCCCCCCCHHHHHHHHHHHcc-CCCcee
Q 009925          234 DVYKKLLQSVQKRGSKLKEIEFEIELNEKRWASLKQLWPLKKPEEEQVEELPREPFIPLTKEEEAAVERAFSA-NWRAVL  312 (522)
Q Consensus       234 ~~~~~~~~~~~~r~~~l~~~~~~~~~~e~r~~~~~~~rp~~~p~~~~~e~~p~e~f~pLs~e~~~~V~~al~~-~~~~vL  312 (522)
                      ++|+++++++++|+.+|++++++++++|++++.+++.+|..+   +++|++++++|+|||+|++++|++||.+ +.++++
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~pLT~e~~~~V~~al~~~~~~~vl  280 (490)
T PLN03189        204 EAYRKLLQSAERRNSKLKDLGFEIELNEKRLSSLRQSRPKPK---EPVEEVPREPFIPLTREEETEVKRAFSANNRRKVL  280 (490)
T ss_pred             HHHHHHHHHHHhhcchhhhccceeehhhhHHHHHhhhccCcc---ccccccccccCcCCCHHHHHHHHHHhcCCCcccee
Confidence            999999999999999999999999999999999998888622   3458999999999999999999999998 447899


Q ss_pred             eecCCCCeEeccccccccCCCCccCHHHHHHHHHHHHHHhhhCCccccceeeeehhhhhhhccCCCCCchhHHHHhhhcc
Q 009925          313 VSHTETGIDITGKILQCLRPGAWLNDEVINVYLGLLKEREKREPQKFLKCHFFNTFFYNKLACGNKGYDFRAVKRWTSAK  392 (522)
Q Consensus       313 vs~~~~nI~It~~DL~~L~~~~WLNDeVINfYl~lL~e~~~~~p~~~~k~~~FnSfFy~kL~~~~~~~~y~~VkRWtk~k  392 (522)
                      +++.+++|+||++||.||.|++||||+||||||.+|.++...+|..+++||+||||||++|...+.+++|.+|+|||+++
T Consensus       281 vs~~~~~i~IT~~DL~~L~Pg~WLNDeVINfYm~LL~er~~~~p~~~~k~h~FNTFFytkL~~~~~~ygY~~VrRWTk~k  360 (490)
T PLN03189        281 VTHENSNIDITGEILRCLKPGAWLNDEVINLYLELLKEREAREPKKFLKCHFFNTFFYKKLVSGKSGYDYKAVRRWTTQK  360 (490)
T ss_pred             eecCCCceEEEHHHhhccCCCCccCHHHHHHHHHHHHHhhhcCcccccceEEEehHHHHHHhhcCCcCChHHHHHHhhhc
Confidence            99988999999999999999999999999999999999877777778999999999999999876778999999999988


Q ss_pred             ccccCcccCCceeeeeecCcceEEEEEecCCCcceecccCCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCceeeccCCC
Q 009925          393 KLGYGLIECDKIFVPIHKQIHWCLAVIDRKDKKFQYLDSLKGRDKKVLGDLARYFVEEVRDKCGKDIDVSDWEQEFVLDL  472 (522)
Q Consensus       393 kigidLf~kD~IfIPIn~~sHW~L~VId~k~k~I~~yDSL~~~~~~vl~~L~~yL~~E~k~K~g~~~d~s~W~~~~v~~v  472 (522)
                      ++++++|++|+||||||.+.||+|+|||++.++|.|||||++.+..++..|+.||..|++++.+.+++.+.|...++.++
T Consensus       361 Kigv~Lfs~D~IFIPIh~n~HWsLaVId~k~k~I~yyDSLgg~~~~vL~~L~rYL~~E~kdK~g~d~D~s~W~~~~~~~v  440 (490)
T PLN03189        361 KLGYHLIDCDKIFVPIHQEIHWTLAVINKKDQKFQYLDSLKGRDPKILDALAKYYVDEVKDKSEKDIDVSSWEQEFVEDL  440 (490)
T ss_pred             ccccccccCceEEeeeecCCeeEEEEEEcCCCeEEEEeCCCCCCHHHHHHHHHHHHHHHhhhcCCCcchhcceeccCCCC
Confidence            88999999999999999999999999999999999999999999999999999999999999999999999998777899


Q ss_pred             CCCCCCCchHHHHHHHHHHHHcCCCCccCCCChHHHHHHHHHHHHHhccC
Q 009925          473 PEQANGFDCGMFMLKYVDFYSRGLGLCFDQSHMPYFRVRTAKEILRMRAD  522 (522)
Q Consensus       473 PqQ~Ng~DCGVFVL~fae~ls~g~~l~FtQ~dMp~fRkrma~EIl~lr~~  522 (522)
                      |||.||+|||||||+||+||++|.+++|+|+||++||++|++||+++|+|
T Consensus       441 PQQ~NG~DCGVFVL~yAE~~SrG~~LtFSQeDMp~fRrRma~EIl~~r~~  490 (490)
T PLN03189        441 PEQKNGYDCGMFMIKYIDFYSRGLGLCFGQEHMPYFRLRTAKEILRLKAD  490 (490)
T ss_pred             CCCCCCCCHHHHHHHHHHHHcCCCCCCcChhhhHHHHHHHHHHHHHhhcC
Confidence            99999999999999999999999999999999999999999999999987

>KOG0778 consensus Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5160 ULP1 Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF02902 Peptidase_C48: Ulp1 protease family, C-terminal catalytic domain This family belongs to family C48 of the peptidase classification Back     alignment and domain information
>KOG3246 consensus Sentrin-specific cysteine protease (Ulp1 family) [General function prediction only] Back     alignment and domain information
>KOG0779 consensus Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF03290 Peptidase_C57: Vaccinia virus I7 processing peptidase; InterPro: IPR004970 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PRK14848 deubiquitinase SseL; Provisional Back     alignment and domain information
>PRK11836 deubiquitinase; Provisional Back     alignment and domain information
>PF00770 Peptidase_C5: Adenovirus endoprotease; InterPro: IPR000855 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query522
1tgz_A226 Structure Of Human Senp2 In Complex With Sumo-1 Len 9e-37
2io0_A232 Crystal Structure Of Human Senp2 In Complex With Pr 6e-36
2xph_A238 Crystal Structure Of Human Senp1 With The Bound Cob 3e-35
2xre_A230 Detection Of Cobalt In Previously Unassigned Human 4e-35
2iyc_A226 Senp1 Native Structure Length = 226 6e-35
2ckg_A225 The Structure Of Senp1 Sumo-2 Co-Complex Suggests A 1e-34
2iy0_A226 Senp1 (Mutant) Sumo1 Rangap Length = 226 6e-34
2g4d_A205 Crystal Structure Of Human Senp1 Mutant (C603s) In 2e-33
1euv_A221 X-Ray Structure Of The C-Terminal Ulp1 Protease Dom 2e-21
2hkp_A221 Sumo Protease Ulp1 With The Catalytic Cysteine Oxid 2e-20
3eay_A323 Crystal Structure Of The Human Senp7 Catalytic Doma 7e-08
2oiv_A186 Structural Analysis Of Xanthomonas Xopd Provides In 1e-05
2oix_A186 Xanthomonas Xopd C470a Mutant Length = 186 7e-05
>pdb|1TGZ|A Chain A, Structure Of Human Senp2 In Complex With Sumo-1 Length = 226 Back     alignment and structure 
Iteration: 1

 Score =  151 bits (381), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 87/232 (37%), Positives = 128/232 (55%), Gaps = 13/232 (5%)
Query: 289 FIPLTKEEEAAVERAFSANWRAVLVSHTETGIDITGKILQCLRPGAWLNDEVINVYLGLL 348
            + LT++ E  +  A     +  ++S +   + IT   +Q L+   WLNDEVIN Y+ LL
Sbjct: 2   LLELTEDMEKEISNALGHGPQDEILS-SAFKLRITRGDIQTLKNYHWLNDEVINFYMNLL 60
Query: 349 KEREKREPQKFLKCHFFNTFFYNKLACGNKGYDFRAVKRWTSAKKLGYGLIECDKIFVPI 408
            ER K+  Q +   H F+TFFY KL  G     ++AVKRWT     G  L E + I VPI
Sbjct: 61  VERNKK--QGYPALHVFSTFFYPKLKSGG----YQAVKRWTK----GVNLFEQEIILVPI 110
Query: 409 HKQIHWCLAVIDRKDKKFQYLDSLKGRDKKVLGDLARYFVEEVRDKCGKDIDVSDWEQEF 468
           H+++HW L VID + K  +YLDS+  +  ++   L +Y  +E + K   D+++ +W    
Sbjct: 111 HRKVHWSLVVIDLRKKCLKYLDSMGQKGHRICEILLQYLQDESKTKRNSDLNLLEWTHHS 170
Query: 469 V--LDLPEQANGFDCGMFMLKYVDFYSRGLGLCFDQSHMPYFRVRTAKEILR 518
           +   ++P+Q NG DCGMF  KY D+ SR   + F Q  MP FR +   EIL 
Sbjct: 171 MKPHEIPQQLNGSDCGMFTCKYADYISRDKPITFTQHQMPLFRKKMVWEILH 222
>pdb|2IO0|A Chain A, Crystal Structure Of Human Senp2 In Complex With Presumo-2 Length = 232 Back     alignment and structure
>pdb|2XPH|A Chain A, Crystal Structure Of Human Senp1 With The Bound Cobalt Length = 238 Back     alignment and structure
>pdb|2XRE|A Chain A, Detection Of Cobalt In Previously Unassigned Human Senp1 Structure Length = 230 Back     alignment and structure
>pdb|2IYC|A Chain A, Senp1 Native Structure Length = 226 Back     alignment and structure
>pdb|2CKG|A Chain A, The Structure Of Senp1 Sumo-2 Co-Complex Suggests A Structural Basis For Discrimination Between Sumo Paralogues During Processing Length = 225 Back     alignment and structure
>pdb|2IY0|A Chain A, Senp1 (Mutant) Sumo1 Rangap Length = 226 Back     alignment and structure
>pdb|2G4D|A Chain A, Crystal Structure Of Human Senp1 Mutant (C603s) In Complex With Sumo-1 Length = 205 Back     alignment and structure
>pdb|1EUV|A Chain A, X-Ray Structure Of The C-Terminal Ulp1 Protease Domain In Complex With Smt3, The Yeast Ortholog Of Sumo Length = 221 Back     alignment and structure
>pdb|2HKP|A Chain A, Sumo Protease Ulp1 With The Catalytic Cysteine Oxidized To A Sulfenic Acid Length = 221 Back     alignment and structure
>pdb|3EAY|A Chain A, Crystal Structure Of The Human Senp7 Catalytic Domain Length = 323 Back     alignment and structure
>pdb|2OIV|A Chain A, Structural Analysis Of Xanthomonas Xopd Provides Insights Into Substrate Specificity Of Ubiquitin-Like Protein Proteases Length = 186 Back     alignment and structure
>pdb|2OIX|A Chain A, Xanthomonas Xopd C470a Mutant Length = 186 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query522
2xph_A238 Sentrin-specific protease 1; hydrolase, cysteine p 2e-62
1th0_A226 SMT3-, sentrin-specific protease 2; SUMO, AXAM, SE 5e-58
1euv_A221 ULP1 protease; SUMO hydrolase, ubiquitin-like prot 6e-58
2bkr_A212 Sentrin-specific protease 8; protein-binding-hydro 7e-35
2oix_A186 Xanthomonas outer protein D; CLAN CE family 48 cys 2e-33
3eay_A323 Sentrin-specific protease 7; ULP, SENP, SUMO, ubiq 7e-28
3eay_A323 Sentrin-specific protease 7; ULP, SENP, SUMO, ubiq 1e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-07
>2xph_A Sentrin-specific protease 1; hydrolase, cysteine protease, thiol protease; 2.40A {Homo sapiens} PDB: 2xre_A 2iyc_A 2iyd_A 2iy1_A 2iy0_A 2ckg_A 2ckh_A 2g4d_A Length = 238 Back     alignment and structure
 Score =  203 bits (518), Expect = 2e-62
 Identities = 86/242 (35%), Positives = 125/242 (51%), Gaps = 13/242 (5%)

Query: 281 VEELPREPFIPLTKEEEAAVERAFSANWRAVLVSHTETGIDITGKILQCLRPGAWLNDEV 340
           +     + F  +T+E E  ++  F    +  ++S     + IT K +Q L    WLNDE+
Sbjct: 6   IGSDSEDEFPEITEEMEKEIKNVFRNGNQDEVLSEA-FRLTITRKDIQTLNHLNWLNDEI 64

Query: 341 INVYLGLLKEREKREPQKFLKCHFFNTFFYNKLACGNKGYDFRAVKRWTSAKKLGYGLIE 400
           IN Y+ +L ER K +       H FNTFF+ KL        ++AVKRWT    +      
Sbjct: 65  INFYMNMLMERSKEKGLP--SVHAFNTFFFTKLKTA----GYQAVKRWTKKVDVF----S 114

Query: 401 CDKIFVPIHKQIHWCLAVIDRKDKKFQYLDSLKGRDKKVLGDLARYFVEEVRDKCGKDID 460
            D + VPIH  +HWCLAV+D + K   Y DS+ G + +    L +Y  +E  DK  K+ D
Sbjct: 115 VDILLVPIHLGVHWCLAVVDFRKKNITYYDSMGGINNEACRILLQYLKQESIDKKRKEFD 174

Query: 461 VSDWE--QEFVLDLPEQANGFDCGMFMLKYVDFYSRGLGLCFDQSHMPYFRVRTAKEILR 518
            + W+   +   ++P+Q NG DCGMF  KY D  ++   + F Q HMPYFR R   EIL 
Sbjct: 175 TNGWQLFSKKSQEIPQQMNGSDCGMFACKYADCITKDRPINFTQQHMPYFRKRMVWEILH 234

Query: 519 MR 520
            +
Sbjct: 235 RK 236
>1th0_A SMT3-, sentrin-specific protease 2; SUMO, AXAM, SENP, ULP, cell cycle, hydrolase; 2.20A {Homo sapiens} SCOP: d.3.1.7 PDB: 1tgz_A 2io0_A 2io1_A 2io2_A 2io3_A Length = 226 Back     alignment and structure
>1euv_A ULP1 protease; SUMO hydrolase, ubiquitin-like protease 1, SMT3 hydrolase desumoylating enzyme, cysteine protease; 1.60A {Saccharomyces cerevisiae} SCOP: d.3.1.7 PDB: 2hkp_A 2hl8_A 2hl9_A Length = 221 Back     alignment and structure
>2bkr_A Sentrin-specific protease 8; protein-binding-hydrolase complex, ubiquitin, hydrolase, Pro thiol protease, UBL conjugation pathway, ubiquitin/hydrolas complex; 1.90A {Homo sapiens} SCOP: d.3.1.7 PDB: 2bkq_A 1xt9_A Length = 212 Back     alignment and structure
>2oix_A Xanthomonas outer protein D; CLAN CE family 48 cysteine protease, type III secreted effec desumoylating enzyme; 1.80A {Xanthomonas euvesicatoria} PDB: 2oiv_A Length = 186 Back     alignment and structure
>3eay_A Sentrin-specific protease 7; ULP, SENP, SUMO, ubiquitin, crystal, alternative splicing, hydrolase, phosphoprotein, polymorphism, thiol protease; 2.40A {Homo sapiens} Length = 323 Back     alignment and structure
>3eay_A Sentrin-specific protease 7; ULP, SENP, SUMO, ubiquitin, crystal, alternative splicing, hydrolase, phosphoprotein, polymorphism, thiol protease; 2.40A {Homo sapiens} Length = 323 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query522
1th0_A226 SMT3-, sentrin-specific protease 2; SUMO, AXAM, SE 100.0
2xph_A238 Sentrin-specific protease 1; hydrolase, cysteine p 100.0
1euv_A221 ULP1 protease; SUMO hydrolase, ubiquitin-like prot 100.0
3eay_A323 Sentrin-specific protease 7; ULP, SENP, SUMO, ubiq 100.0
2bkr_A212 Sentrin-specific protease 8; protein-binding-hydro 100.0
2oix_A186 Xanthomonas outer protein D; CLAN CE family 48 cys 99.98
4ekf_A204 Adenain; alpha and beta protein (A+B), hydrolase; 96.35
>1th0_A SMT3-, sentrin-specific protease 2; SUMO, AXAM, SENP, ULP, cell cycle, hydrolase; 2.20A {Homo sapiens} SCOP: d.3.1.7 PDB: 1tgz_A 2io0_A 2io1_A 2io2_A 2io3_A Back     alignment and structure
Probab=100.00  E-value=1.1e-50  Score=395.92  Aligned_cols=220  Identities=39%  Similarity=0.713  Sum_probs=203.3

Q ss_pred             CCCCCHHHHHHHHHHHcc-CCCceeeecCCCCeEeccccccccCCCCccCHHHHHHHHHHHHHHhhhCCccccceeeeeh
Q 009925          289 FIPLTKEEEAAVERAFSA-NWRAVLVSHTETGIDITGKILQCLRPGAWLNDEVINVYLGLLKEREKREPQKFLKCHFFNT  367 (522)
Q Consensus       289 f~pLs~e~~~~V~~al~~-~~~~vLvs~~~~nI~It~~DL~~L~~~~WLNDeVINfYl~lL~e~~~~~p~~~~k~~~FnS  367 (522)
                      |+|||+|++++|..+|.. ++++++++.  +++.||.+|+.+|.+++||||+|||||+.+|.++....  ..+++|+|+|
T Consensus         2 ~~~lt~~~~~~~~~~l~~~~~~~~~~~~--~~~~l~~~Dl~~L~~~~wLND~iI~fy~~~L~~~~~~~--~~~~~~~f~s   77 (226)
T 1th0_A            2 LLELTEDMEKEISNALGHGPQDEILSSA--FKLRITRGDIQTLKNYHWLNDEVINFYMNLLVERNKKQ--GYPALHVFST   77 (226)
T ss_dssp             CCCCCHHHHHHHHHHHSSSCTTCEEEEE--TTEEEEHHHHGGGSTTCCCCHHHHHHHHHHHHHHHHHH--TCCCEEECCT
T ss_pred             CCCCCHHHHHHHHHHhccCCccceeecc--CCeEEEHHHHhhcCCCCccChHHHHHHHHHHHHhhhhc--cCCcEEEEeH
Confidence            679999999999999986 788999875  79999999999999999999999999999998876432  3478999999


Q ss_pred             hhhhhhccCCCCCchhHHHHhhhccccccCcccCCceeeeeecCcceEEEEEecCCCcceecccCCCCCHHHHHHHHHHH
Q 009925          368 FFYNKLACGNKGYDFRAVKRWTSAKKLGYGLIECDKIFVPIHKQIHWCLAVIDRKDKKFQYLDSLKGRDKKVLGDLARYF  447 (522)
Q Consensus       368 fFy~kL~~~~~~~~y~~VkRWtk~kkigidLf~kD~IfIPIn~~sHW~L~VId~k~k~I~~yDSL~~~~~~vl~~L~~yL  447 (522)
                      |||++|...    +|+.|++|++.    .++|++++||||||.++||+|+|||+++++|+|||||++.+..+...|..||
T Consensus        78 ~f~~~l~~~----~~~~v~~w~~~----~~l~~~~~i~iPin~~~HW~l~vi~~~~~~i~~~DSl~~~~~~~~~~l~~~l  149 (226)
T 1th0_A           78 FFYPKLKSG----GYQAVKRWTKG----VNLFEQEIILVPIHRKVHWSLVVIDLRKKCLKYLDSMGQKGHRICEILLQYL  149 (226)
T ss_dssp             THHHHHHHH----TGGGTGGGGTT----CCGGGSSEEEEEEEETTEEEEEEEETTTTEEEEECTTCCCCHHHHHHHHHHH
T ss_pred             HHHHHhhhc----ccHHHHHHhhc----CCcccCCEEEEeEEeCcEEEEEEEEcCCCceEEEcCCCCCchHHHHHHHHHH
Confidence            999999876    78999999973    6899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhcCCCCCCCCceeec--cCCCCCCCCCCchHHHHHHHHHHHHcCCCCccCCCChHHHHHHHHHHHHHhc
Q 009925          448 VEEVRDKCGKDIDVSDWEQEF--VLDLPEQANGFDCGMFMLKYVDFYSRGLGLCFDQSHMPYFRVRTAKEILRMR  520 (522)
Q Consensus       448 ~~E~k~K~g~~~d~s~W~~~~--v~~vPqQ~Ng~DCGVFVL~fae~ls~g~~l~FtQ~dMp~fRkrma~EIl~lr  520 (522)
                      ..++..+.+.+++.+.|+...  ..++|||.||+|||||||+||++++++.++.|+|++|++||++|+.+|++.+
T Consensus       150 ~~e~~~k~~~~~~~~~w~~~~~~~~~~PqQ~Ng~DCGvfvl~~~~~~~~~~~~~f~q~dm~~~R~~~~~ei~~~~  224 (226)
T 1th0_A          150 QDESKTKRNSDLNLLEWTHHSMKPHEIPQQLNGSDCGMFTCKYADYISRDKPITFTQHQMPLFRKKMVWEILHQQ  224 (226)
T ss_dssp             HHHHHHHTSCCCCGGGCEEEECCTTTSCCCCSSSCHHHHHHHHHHHHTTTCCCCCCGGGHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHhcCCCCCcccceeccccCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCccChhhHHHHHHHHHHHHHhCC
Confidence            999999988888889998753  4699999999999999999999999999999999999999999999999876
>2xph_A Sentrin-specific protease 1; hydrolase, cysteine protease, thiol protease; 2.40A {Homo sapiens} PDB: 2xre_A 2iyc_A 2iyd_A 2iy1_A 2iy0_A 2ckg_A 2ckh_A 2g4d_A Back     alignment and structure
>1euv_A ULP1 protease; SUMO hydrolase, ubiquitin-like protease 1, SMT3 hydrolase desumoylating enzyme, cysteine protease; 1.60A {Saccharomyces cerevisiae} SCOP: d.3.1.7 PDB: 2hkp_A 2hl8_A 2hl9_A Back     alignment and structure
>3eay_A Sentrin-specific protease 7; ULP, SENP, SUMO, ubiquitin, crystal, alternative splicing, hydrolase, phosphoprotein, polymorphism, thiol protease; 2.40A {Homo sapiens} Back     alignment and structure
>2bkr_A Sentrin-specific protease 8; protein-binding-hydrolase complex, ubiquitin, hydrolase, Pro thiol protease, UBL conjugation pathway, ubiquitin/hydrolas complex; 1.90A {Homo sapiens} SCOP: d.3.1.7 PDB: 2bkq_A 1xt9_A Back     alignment and structure
>2oix_A Xanthomonas outer protein D; CLAN CE family 48 cysteine protease, type III secreted effec desumoylating enzyme; 1.80A {Xanthomonas euvesicatoria} PDB: 2oiv_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 522
d2iy1a1225 d.3.1.7 (A:419-643) Sentrin-specific protease 1 {H 5e-54
d1th0a_226 d.3.1.7 (A:) Sentrin-specific protease 2, SENP2 {H 2e-53
d1euva_221 d.3.1.7 (A:) Ulp1 protease C-terminal domain {Bake 3e-49
d2bkra1212 d.3.1.7 (A:1-212) Sentrin-specific protease 8, SEN 3e-31
>d2iy1a1 d.3.1.7 (A:419-643) Sentrin-specific protease 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 225 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Sentrin-specific protease 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  180 bits (456), Expect = 5e-54
 Identities = 85/234 (36%), Positives = 119/234 (50%), Gaps = 13/234 (5%)

Query: 289 FIPLTKEEEAAVERAFSANWRAVLVSHTETGIDITGKILQCLRPGAWLNDEVINVYLGLL 348
           F  +T+E E  ++  F        V      + IT K +Q L    WLNDE+IN Y+ +L
Sbjct: 2   FPEITEEMEKEIKNVFRNG-NQDEVLSEAFRLTITRKDIQTLNHLNWLNDEIINFYMNML 60

Query: 349 KEREKREPQKFLKCHFFNTFFYNKLACGNKGYDFRAVKRWTSAKKLGYGLIECDKIFVPI 408
            ER K +       H FNTFF+ K     K   ++AVKRWT    +       D + VPI
Sbjct: 61  MERSKEKGLP--SVHAFNTFFFTK----LKTAGYQAVKRWTKKVDV----FSVDILLVPI 110

Query: 409 HKQIHWCLAVIDRKDKKFQYLDSLKGRDKKVLGDLARYFVEEVRDKCGKDIDVSDWE--Q 466
           H  +HWCLAV+D + K   Y DS+ G + +    L +Y  +E  DK  K+ D + W+   
Sbjct: 111 HLGVHWCLAVVDFRKKNITYYDSMGGINNEACRILLQYLKQESIDKKRKEFDTNGWQLFS 170

Query: 467 EFVLDLPEQANGFDCGMFMLKYVDFYSRGLGLCFDQSHMPYFRVRTAKEILRMR 520
           +   ++P+Q NG D GMF  KY D  ++   + F Q HMPYFR R   EIL  +
Sbjct: 171 KKSQEIPQQMNGSDAGMFACKYADCITKDRPINFTQQHMPYFRKRMVWEILHRK 224
>d1th0a_ d.3.1.7 (A:) Sentrin-specific protease 2, SENP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 226 Back     information, alignment and structure
>d1euva_ d.3.1.7 (A:) Ulp1 protease C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 221 Back     information, alignment and structure
>d2bkra1 d.3.1.7 (A:1-212) Sentrin-specific protease 8, SENP8 {Human (Homo sapiens) [TaxId: 9606]} Length = 212 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query522
d2iy1a1225 Sentrin-specific protease 1 {Human (Homo sapiens) 100.0
d1th0a_226 Sentrin-specific protease 2, SENP2 {Human (Homo sa 100.0
d1euva_221 Ulp1 protease C-terminal domain {Baker's yeast (Sa 100.0
d2bkra1212 Sentrin-specific protease 8, SENP8 {Human (Homo sa 100.0
d1nlna_203 Human adenovirus 2 proteinase, adenain {Mastadenov 94.88
>d2iy1a1 d.3.1.7 (A:419-643) Sentrin-specific protease 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Sentrin-specific protease 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.5e-45  Score=349.36  Aligned_cols=220  Identities=40%  Similarity=0.682  Sum_probs=201.6

Q ss_pred             CCCCCHHHHHHHHHHHcc-CCCceeeecCCCCeEeccccccccCCCCccCHHHHHHHHHHHHHHhhhCCccccceeeeeh
Q 009925          289 FIPLTKEEEAAVERAFSA-NWRAVLVSHTETGIDITGKILQCLRPGAWLNDEVINVYLGLLKEREKREPQKFLKCHFFNT  367 (522)
Q Consensus       289 f~pLs~e~~~~V~~al~~-~~~~vLvs~~~~nI~It~~DL~~L~~~~WLNDeVINfYl~lL~e~~~~~p~~~~k~~~FnS  367 (522)
                      |+|||++++.++.+++.. ++++++++.  +++.||.+|+++|.+++||||.|||||+.+|.++....  ...++++|+|
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~it~~Dl~~L~~~~wLnd~iI~~y~~~l~~~~~~~--~~~~~~~~~t   77 (225)
T d2iy1a1           2 FPEITEEMEKEIKNVFRNGNQDEVLSEA--FRLTITRKDIQTLNHLNWLNDEIINFYMNMLMERSKEK--GLPSVHAFNT   77 (225)
T ss_dssp             CCCCCHHHHHHHHHHSSSSCTTCEEEEE--TTEEEEHHHHHTTSTTCCCBHHHHHHHHHHHHHHTTST--TSCCEEECCT
T ss_pred             CCCCCHHHHHHHHHHhcCCCcCceeeec--CCceeeHHHHHHhcCCcchhhHHHHHHHHHHHHHhhhh--ccCceEEecc
Confidence            789999999999999988 778899864  79999999999999999999999999999999876543  3468999999


Q ss_pred             hhhhhhccCCCCCchhHHHHhhhccccccCcccCCceeeeeecCcceEEEEEecCCCcceecccCCCCCHHHHHHHHHHH
Q 009925          368 FFYNKLACGNKGYDFRAVKRWTSAKKLGYGLIECDKIFVPIHKQIHWCLAVIDRKDKKFQYLDSLKGRDKKVLGDLARYF  447 (522)
Q Consensus       368 fFy~kL~~~~~~~~y~~VkRWtk~kkigidLf~kD~IfIPIn~~sHW~L~VId~k~k~I~~yDSL~~~~~~vl~~L~~yL  447 (522)
                      +|+..+...    ++..+++|+++    ++++++++||||||.++||+|+||+++.++|++||||++.+......+..++
T Consensus        78 ~~~~~~~~~----~~~~~~~~~~~----~~~~~~~~I~iPin~~~HW~l~vi~~~~~~i~~~DSl~~~~~~~~~~i~~~l  149 (225)
T d2iy1a1          78 FFFTKLKTA----GYQAVKRWTKK----VDVFSVDILLVPIHLGVHWCLAVVDFRKKNITYYDSMGGINNEACRILLQYL  149 (225)
T ss_dssp             THHHHHHHS----CGGGTGGGGTT----CCGGGSSEEEEEEECSSCEEEEEEETTTTEEEEECTTCCCCHHHHHHHHHHH
T ss_pred             HHHhhhccc----CHHHHHHHHhc----cccccCCEEEEEEeCCCCEEEEEEEeccceEEEEecCCCCchHHHHHHHHHH
Confidence            999998877    78999999973    5789999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhcCCCCCCCCceee--ccCCCCCCCCCCchHHHHHHHHHHHHcCCCCccCCCChHHHHHHHHHHHHHhc
Q 009925          448 VEEVRDKCGKDIDVSDWEQE--FVLDLPEQANGFDCGMFMLKYVDFYSRGLGLCFDQSHMPYFRVRTAKEILRMR  520 (522)
Q Consensus       448 ~~E~k~K~g~~~d~s~W~~~--~v~~vPqQ~Ng~DCGVFVL~fae~ls~g~~l~FtQ~dMp~fRkrma~EIl~lr  520 (522)
                      ..++..+.+..++...|+..  .+.++|||.||+|||||||+||++++.+.+++|+|++|++||++|+.+|++.+
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~pqQ~Ng~DCGvfvl~~~~~~~~~~~~~~~q~~~~~~R~~~~~~l~~~~  224 (225)
T d2iy1a1         150 KQESIDKKRKEFDTNGWQLFSKKSQEIPQQMNGSDAGMFACKYADCITKDRPINFTQQHMPYFRKRMVWEILHRK  224 (225)
T ss_dssp             HHHHHHHHSSCCCCTTCEEEECCTTTSCCCCSSSTHHHHHHHHHHHHHTTCCCCCCGGGHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHhccCccCcccceecccccccCCCCCCCCChHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHHHHhCc
Confidence            99888888888888888764  35789999999999999999999999999999999999999999999999876
>d1th0a_ d.3.1.7 (A:) Sentrin-specific protease 2, SENP2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1euva_ d.3.1.7 (A:) Ulp1 protease C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2bkra1 d.3.1.7 (A:1-212) Sentrin-specific protease 8, SENP8 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nlna_ d.3.1.7 (A:) Human adenovirus 2 proteinase, adenain {Mastadenovirus H2 [TaxId: 10515]} Back     information, alignment and structure