Citrus Sinensis ID: 009939
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 522 | ||||||
| 225438811 | 527 | PREDICTED: UPF0481 protein At3g47200-lik | 0.992 | 0.982 | 0.776 | 0.0 | |
| 224096712 | 533 | predicted protein [Populus trichocarpa] | 0.996 | 0.975 | 0.771 | 0.0 | |
| 255567871 | 531 | conserved hypothetical protein [Ricinus | 0.996 | 0.979 | 0.784 | 0.0 | |
| 147810955 | 752 | hypothetical protein VITISV_038869 [Viti | 0.955 | 0.663 | 0.748 | 0.0 | |
| 357482771 | 534 | hypothetical protein MTR_5g016570 [Medic | 0.994 | 0.971 | 0.781 | 0.0 | |
| 388501700 | 534 | unknown [Medicago truncatula] | 0.994 | 0.971 | 0.779 | 0.0 | |
| 356495484 | 490 | PREDICTED: UPF0481 protein At3g47200-lik | 0.934 | 0.995 | 0.768 | 0.0 | |
| 449448496 | 488 | PREDICTED: UPF0481 protein At3g47200-lik | 0.931 | 0.995 | 0.730 | 0.0 | |
| 449517373 | 488 | PREDICTED: LOW QUALITY PROTEIN: UPF0481 | 0.931 | 0.995 | 0.728 | 0.0 | |
| 15229680 | 531 | uncharacterized protein [Arabidopsis tha | 0.982 | 0.966 | 0.683 | 0.0 |
| >gi|225438811|ref|XP_002278393.1| PREDICTED: UPF0481 protein At3g47200-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 870 bits (2247), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 410/528 (77%), Positives = 463/528 (87%), Gaps = 10/528 (1%)
Query: 1 MVAVFNKELLSWYLITVKLRETVESGIPK---TTTSRAASE-----QQQTPSESLHIVIG 52
MVAVFNKELLSWYLIT+KL+ETVE+GIP T TS + E Q Q P++SL IV+
Sbjct: 1 MVAVFNKELLSWYLITLKLKETVEAGIPNLPGTPTSARSIELSEAPQHQQPNDSLQIVVN 60
Query: 53 EDAENCEDAATSPDSEWVISIKEKLEQARQDDEAGSWAKLSIYKVPQHLREGGDDRAYVP 112
D +N + DSEWVISIKEKLEQA QDD A SWAKL IY++P +LREG DD+AY+P
Sbjct: 61 GDGQNFAEETNPSDSEWVISIKEKLEQAHQDDAADSWAKLCIYRLPHYLREG-DDKAYIP 119
Query: 113 QIVSLGPYHHGKKRLRQMDRHKWRSLHHVLKRNSQDIKIYLDSMKELEEKARACYEGPIS 172
QIVSLGPYHHG++RLR MDRHKWRSLHH+LKR + DI+IYLD+MKELEEKARACYEG I
Sbjct: 120 QIVSLGPYHHGRRRLRNMDRHKWRSLHHILKRTNHDIEIYLDAMKELEEKARACYEGTIC 179
Query: 173 LSSNDFAEMMVLDGCFVLELFRGASEGFTRLGYPRNDPVFAMRGSMHSIQRDMIMLENQL 232
LSSN+F EMMVLDGCF+LELFRG + GF LGY RNDPVFA+RGSMHSIQRDMIMLENQ+
Sbjct: 180 LSSNEFVEMMVLDGCFILELFRGVAGGFKHLGYARNDPVFAIRGSMHSIQRDMIMLENQI 239
Query: 233 PLFILDRLLGLQFGKPEQKGLVAKLALRFFDPLMPTDEPLTKGERNKLESSLGNANFFDP 292
PLF+L+RLLG+Q G+PEQKGLVAKLALRFFDPLMPTDEPLTK +RN+LESSLG FDP
Sbjct: 240 PLFVLERLLGIQLGQPEQKGLVAKLALRFFDPLMPTDEPLTKSDRNRLESSLGYTTTFDP 299
Query: 293 LSDQCGLHCLDVFRKSLLRSGPKPEPPKIWIKRWSQTNRVADKRRQQLIHCVTELREAGV 352
L DQ GLHCL+VFR+SLLR+GP+P P+IW+KRWS +NRVADKRRQQLIHCVT+LREAG+
Sbjct: 300 LGDQGGLHCLEVFRRSLLRTGPRP-VPRIWMKRWSHSNRVADKRRQQLIHCVTQLREAGI 358
Query: 353 KFRKRKTDRFWDIKFKNGILSIPRLFVHDGTKSLFLNLIAFEQCHFDCSNDITSFVIFMD 412
KF+KRKTDRFWDIKFKNGIL IPRL +HDGTKSLFLNLIAFEQCH DCSNDITS+VIFMD
Sbjct: 359 KFKKRKTDRFWDIKFKNGILRIPRLLIHDGTKSLFLNLIAFEQCHLDCSNDITSYVIFMD 418
Query: 413 NLINSPEDVGYLHYCGIIEHWLGSDAEVADLFNRLCEEVVFDINDSYLSRLSEDVNQYYN 472
+LINSPEDVGYLHYCGI+EHWLGS++EVADLFNRLC+EVVFDINDSYLS LSE VN+YYN
Sbjct: 419 SLINSPEDVGYLHYCGIMEHWLGSESEVADLFNRLCQEVVFDINDSYLSSLSEQVNKYYN 478
Query: 473 HKWNAWRASLRHKYFNNPWAIISLVAAVVLLLLTFAQTFYGVYGYYRP 520
H+WNAWRASL+H YF++PW IIS VAAVVLL LTFAQTFY VY YYRP
Sbjct: 479 HRWNAWRASLKHNYFSSPWTIISFVAAVVLLALTFAQTFYAVYSYYRP 526
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224096712|ref|XP_002310707.1| predicted protein [Populus trichocarpa] gi|222853610|gb|EEE91157.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|255567871|ref|XP_002524913.1| conserved hypothetical protein [Ricinus communis] gi|223535748|gb|EEF37410.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
| >gi|147810955|emb|CAN59797.1| hypothetical protein VITISV_038869 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|357482771|ref|XP_003611672.1| hypothetical protein MTR_5g016570 [Medicago truncatula] gi|355513007|gb|AES94630.1| hypothetical protein MTR_5g016570 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
| >gi|388501700|gb|AFK38916.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
|---|
| >gi|356495484|ref|XP_003516607.1| PREDICTED: UPF0481 protein At3g47200-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|449448496|ref|XP_004142002.1| PREDICTED: UPF0481 protein At3g47200-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|449517373|ref|XP_004165720.1| PREDICTED: LOW QUALITY PROTEIN: UPF0481 protein At3g47200-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|15229680|ref|NP_190581.1| uncharacterized protein [Arabidopsis thaliana] gi|6522933|emb|CAB62120.1| putative protein [Arabidopsis thaliana] gi|60547801|gb|AAX23864.1| hypothetical protein At3g50120 [Arabidopsis thaliana] gi|332645107|gb|AEE78628.1| uncharacterized protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 522 | ||||||
| TAIR|locus:2083078 | 531 | AT3G50120 "AT3G50120" [Arabido | 0.982 | 0.966 | 0.672 | 6.1e-197 | |
| TAIR|locus:2074755 | 541 | AT3G50170 "AT3G50170" [Arabido | 0.980 | 0.946 | 0.619 | 4.6e-176 | |
| TAIR|locus:2083093 | 564 | AT3G50130 [Arabidopsis thalian | 0.858 | 0.794 | 0.660 | 1.1e-168 | |
| TAIR|locus:2083108 | 539 | AT3G50140 [Arabidopsis thalian | 0.860 | 0.833 | 0.623 | 1.3e-158 | |
| TAIR|locus:2083123 | 509 | AT3G50150 [Arabidopsis thalian | 0.865 | 0.888 | 0.593 | 8.8e-150 | |
| TAIR|locus:2074760 | 588 | AT3G50180 [Arabidopsis thalian | 0.446 | 0.396 | 0.604 | 8.1e-140 | |
| TAIR|locus:2074770 | 493 | AT3G50190 [Arabidopsis thalian | 0.480 | 0.509 | 0.553 | 8.1e-138 | |
| TAIR|locus:2083138 | 503 | AT3G50160 "AT3G50160" [Arabido | 0.417 | 0.433 | 0.583 | 9.9e-131 | |
| TAIR|locus:2044918 | 448 | AT2G36430 "AT2G36430" [Arabido | 0.406 | 0.473 | 0.343 | 2.3e-68 | |
| TAIR|locus:2171127 | 440 | AT5G22540 "AT5G22540" [Arabido | 0.413 | 0.490 | 0.342 | 4.8e-56 |
| TAIR|locus:2083078 AT3G50120 "AT3G50120" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1907 (676.4 bits), Expect = 6.1e-197, P = 6.1e-197
Identities = 363/540 (67%), Positives = 430/540 (79%)
Query: 1 MVAVFNKELLSWYLITVKLRETVES---------------GIPKTTTS---RAASEQQQT 42
MVAVF K++LSWYL+T+K+RE +E+ G+P+ T S + QQT
Sbjct: 1 MVAVFYKDMLSWYLLTLKIREKLETQNQESVLVNQDQNLPGLPEITRSDQDQNIHNNQQT 60
Query: 43 PSESLHIVIGEDAENCEDAATSPDSEWVISIKEKLEQARQDDEAGSWAKLSIYKVPQHLR 102
S+ VI E ++ D +WVISI +KLEQA +DD+ W KL IY+VP +L+
Sbjct: 61 QSDPAIYVIKESPKDSRD-------DWVISITDKLEQAHRDDDTTLWGKLCIYRVPYYLQ 113
Query: 103 EGGDDRAYVPQIVSLGPYHHGKKRLRQMDRHKWRSLHHVLKRNSQDIKIYLDSMKELEEK 162
E D+++Y PQ VSLGPYHHGKKRLR MDRHKWR+++ VLKR +Q IK+Y+D+M+ELEEK
Sbjct: 114 EN-DNKSYFPQTVSLGPYHHGKKRLRSMDRHKWRAVNRVLKRTNQGIKMYIDAMRELEEK 172
Query: 163 ARACYEGPISLSSNDFAEMMVLDGCFVLELFRGASEGFTRLGYPRNDPVFAMRGSMHSIQ 222
ARACYEGP+SLSSN+F EM+VLDGCFVLELFRGA EGFT LGY RNDPVFAMRGSMHSIQ
Sbjct: 173 ARACYEGPLSLSSNEFIEMLVLDGCFVLELFRGAVEGFTELGYARNDPVFAMRGSMHSIQ 232
Query: 223 RDMIMLENQLPLFILDRLLGLQFGKPEQKGLVAKLALRFFDPLMPTDEPLTKGERNKLES 282
RDM+MLENQLPLF+L+RLL LQ G Q GLVA+LA+RFFDPLMPTDEPLTK ++KLE+
Sbjct: 233 RDMVMLENQLPLFVLNRLLELQLGTRNQTGLVAQLAIRFFDPLMPTDEPLTKSGQSKLEN 292
Query: 283 SLGNANFFDPLSDQCGLHCLDVFRKSLLRSGPKPEPPKIWIKRWSQTNRVADKRRQQLIH 342
SL FDP +D LHCLDVFR+SLLRS PKPEP ++ KRWS+ RVADKRRQQLIH
Sbjct: 293 SLARDKSFDPFADMGELHCLDVFRRSLLRSSPKPEP-RLTRKRWSRNTRVADKRRQQLIH 351
Query: 343 CVTELREAGVKFRKRKTDRFWDIKFKNGILSIPRLFVHDGTKSLFLNLIAFEQCHFDCSN 402
CVTEL+EAG+KFR+RKTDRFWD++FKNG L IPRL +HDGTKSLFLNLIAFEQCH D SN
Sbjct: 352 CVTELKEAGIKFRRRKTDRFWDMQFKNGYLEIPRLLIHDGTKSLFLNLIAFEQCHIDSSN 411
Query: 403 DITSFVIFMDNLINSPEDVGYLHYCGIIEHWLGSDAEVADLFNRLCEEVVFDINDSYLSR 462
DITS++IFMDNLI+S EDV YLHYCGIIEHWLGSD+EVADLFNRLC+EVVFD DSYLSR
Sbjct: 412 DITSYIIFMDNLIDSHEDVSYLHYCGIIEHWLGSDSEVADLFNRLCQEVVFDTEDSYLSR 471
Query: 463 LSEDVNQYYNHKWNAWRASLRHKYFNNPWAIISXXXXXXXXXXTFAQTFYGVYGYYRPVS 522
LS +VN+YY+HKWNAWRA+L+HKYFNNPWAI+S TF+Q+FY VY YY+P S
Sbjct: 472 LSIEVNRYYDHKWNAWRATLKHKYFNNPWAIVSFCAAVILLVLTFSQSFYAVYAYYKPPS 531
|
|
| TAIR|locus:2074755 AT3G50170 "AT3G50170" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2083093 AT3G50130 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2083108 AT3G50140 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2083123 AT3G50150 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2074760 AT3G50180 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2074770 AT3G50190 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2083138 AT3G50160 "AT3G50160" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2044918 AT2G36430 "AT2G36430" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2171127 AT5G22540 "AT5G22540" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 522 | |||
| pfam03140 | 387 | pfam03140, DUF247, Plant protein of unknown functi | 0.0 |
| >gnl|CDD|217385 pfam03140, DUF247, Plant protein of unknown function | Back alignment and domain information |
|---|
Score = 529 bits (1365), Expect = 0.0
Identities = 200/420 (47%), Positives = 262/420 (62%), Gaps = 40/420 (9%)
Query: 94 IYKVPQHLREGGDDRAYVPQIVSLGPYHHGKKRLRQMDRHKWRSLHHVLKR--NSQDIKI 151
IY+VP LR+ + AY P++VS+GPYHHGK LR M+ HKWR L+ L R ++
Sbjct: 1 IYRVPARLRDV-NPEAYEPRVVSIGPYHHGKPHLRAMEEHKWRYLNRFLDRTGRGLSLED 59
Query: 152 YLDSMKELEEKARACYEGPIS-LSSNDFAEMMVLDGCFVLELFRGASEGFTRLGYPRNDP 210
L +++ELEE+ARACY + +SS +F EM++LDGCF+LELF SEG Y NDP
Sbjct: 60 LLAAVRELEEEARACYAEDVDWMSSEEFVEMLLLDGCFILELFLRLSEGI----YGENDP 115
Query: 211 VFAMRGSMHSIQRDMIMLENQLPLFILDRLLGLQFGKPEQKGLVAKLALRFFD---PLMP 267
+FA R + I+RD+++LENQ+P F+L++L L G+ + K + LALRFF L+P
Sbjct: 116 LFARRWLLSLIRRDLLLLENQIPFFVLEKLFELLTGRQDVKTSLNDLALRFFYDCESLLP 175
Query: 268 TDEPLTKGERNKLESSLGNANFFDPLSDQCGLHCLDVFRKSLLRSGPKPEPPKIWIKRWS 327
D+ + + H LD+ R+SLL S P +
Sbjct: 176 PDDLIEESN---------------------VHHLLDLLRRSLLPSTSPDPTPAAPPRDNG 214
Query: 328 QTNRVADKRRQQLIHCVTELREAGVKFRKRKTDR-FWDIKFKNGILSIPRLFVHDGTKSL 386
+LI TELREAGV+F++RKT D+ FK G+L IPRL V DGT+SL
Sbjct: 215 -------AATPRLIPSATELREAGVRFKRRKTASCILDVSFKRGVLEIPRLAVDDGTESL 267
Query: 387 FLNLIAFEQCHFDCSNDITSFVIFMDNLINSPEDVGYLHYCGIIEHWLGSDAEVADLFNR 446
NLIAFEQCH N +TS+V FMDNLIN+ EDV L GI+E+ LGSD EVA FNR
Sbjct: 268 LRNLIAFEQCHGGSGNHVTSYVAFMDNLINTAEDVALLRRKGILENLLGSDEEVAKFFNR 327
Query: 447 LCEEVVFDINDSYLSRLSEDVNQYYNHKWNAWRASLRHKYFNNPWAIISLVAAVVLLLLT 506
LC VVFD++DSYLS + EDVN+Y +WN W+A+LR KYF+NPWA ISL+AAVVLL+LT
Sbjct: 328 LCRGVVFDVDDSYLSGVFEDVNRYCRSRWNRWKATLRRKYFSNPWAAISLLAAVVLLVLT 387
|
The function of the plant proteins constituting this family is unknown. Length = 387 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 522 | |||
| PF03140 | 391 | DUF247: Plant protein of unknown function; InterPr | 100.0 |
| >PF03140 DUF247: Plant protein of unknown function; InterPro: IPR004158 The function of the plant proteins constituting this family is unknown | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-106 Score=854.31 Aligned_cols=383 Identities=51% Similarity=0.903 Sum_probs=334.0
Q ss_pred EEecCccccccCCCCCcccceeeecCCCCCChhhccHHHHHHHHHHHHHhhcC---ccHHHHHHHHHHHHHHHHhccCCC
Q 009939 94 IYKVPQHLREGGDDRAYVPQIVSLGPYHHGKKRLRQMDRHKWRSLHHVLKRNS---QDIKIYLDSMKELEEKARACYEGP 170 (522)
Q Consensus 94 I~rVP~~lR~~~n~~aY~P~vVSIGPyHhg~~~L~~mE~~K~~~l~~~l~r~~---~~l~~~~~~i~~~e~~aR~cY~~~ 170 (522)
|||||+++|+ +|+++|+|++|||||||||+++|+.||++||+|+++|++|++ .++++++++|+++|++||+||+++
T Consensus 1 I~rVP~~lr~-~~~~~Y~P~~VsIGPyH~g~~~L~~mE~~K~~~l~~~l~~~~~~~~~l~~~~~~i~~~e~~~R~~Y~~~ 79 (391)
T PF03140_consen 1 IYRVPESLRD-VNPKAYTPQVVSIGPYHHGKPDLQEMEEHKLRYLHRFLKRSGAPAESLEDYVEAIRSLEEEARACYAED 79 (391)
T ss_pred CcCCCHHHcc-CCchhcCCceEEeCCCCCCchhhhhhHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHHhccc
Confidence 8999999999 999999999999999999999999999999999999999998 899999999999999999999999
Q ss_pred CC-CChHHHHHHHHHhHHHHHHHhhhhccCcccCCCCCCCc-ccccccchhhhhhhhhHhcccchHHHHHHHhhhhcC-C
Q 009939 171 IS-LSSNDFAEMMVLDGCFVLELFRGASEGFTRLGYPRNDP-VFAMRGSMHSIQRDMIMLENQLPLFILDRLLGLQFG-K 247 (522)
Q Consensus 171 i~-~~~~eF~~MmllDGCFiLe~l~~~~~~~~~~~~~~~dp-~~~~~~~~~~i~~DllLLENQIPffVL~~L~~l~~~-~ 247 (522)
++ +++++|++||++|||||||+|+.... +...+|| ++..+|.+..|++||+|||||||||||++||++..+ .
T Consensus 80 ~~~~~~~~f~~MmllDgCFlLe~~~~~~~-----~~~~~d~~~~~~~~~~~~i~~Dl~LLENQIPffVL~~L~~l~~~~~ 154 (391)
T PF03140_consen 80 IDDMSSDEFVEMMLLDGCFLLEFFLRYSR-----SDGENDPGIFSRPWLLSAIRRDLLLLENQIPFFVLEKLFELLFGSK 154 (391)
T ss_pred ccccCHHHHHHHHHHHHHHHHHHHHhhhh-----ccccccccccccccccccchhheeeecccchHHHHHHHHHHhcccc
Confidence 97 99999999999999999999998765 2235688 888899999999999999999999999999999873 2
Q ss_pred CchhhHHHHHHHHhcCCCCCCCCCCcccccchhhhhcCCCCCCCCCCCCCCCchhhhhhhhcccCCCCCCC-Cccchhcc
Q 009939 248 PEQKGLVAKLALRFFDPLMPTDEPLTKGERNKLESSLGNANFFDPLSDQCGLHCLDVFRKSLLRSGPKPEP-PKIWIKRW 326 (522)
Q Consensus 248 ~~~~~~~~~l~~~ff~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~HlLdl~r~~~l~~~~~~~~-~~~~~~~~ 326 (522)
......+..++.+||....+...+ ..+.....+.|+|||+|.+++++.+.+.+ +......
T Consensus 155 ~~~~~~l~~l~~~~~~~~~~~~~~------------------~~~~~~~~~~HlL~L~~~~~~p~~~~~~~~~~~~~~~- 215 (391)
T PF03140_consen 155 SDVDESLIDLVLKFFYKHWPSWPP------------------DEPISNPEPHHLLDLLRMSLLPSPPSSSPTPPRPPRS- 215 (391)
T ss_pred cCccchHHHHHHhHhccccccccc------------------cccccCCCCCChHHHHHHHhccccCCcccCCCCcccc-
Confidence 334456788999999322111100 01222344699999999999983222111 1111000
Q ss_pred cccccccccccccccccHHHHHHcCcEEEecCCCc-ceeeEeCCceEEeceEEeeCCcchhhhhhhHhhhccCCCCCchh
Q 009939 327 SQTNRVADKRRQQLIHCVTELREAGVKFRKRKTDR-FWDIKFKNGILSIPRLFVHDGTKSLFLNLIAFEQCHFDCSNDIT 405 (522)
Q Consensus 327 ~~~~~~~~~~~~~~~~sAteL~eaGVkFk~~~~~~-llDI~F~~G~L~IP~L~Idd~T~~llrNLiAfEqc~~~~~~~vT 405 (522)
.........+|||+||++|||+||++++.+ ++||+|++|+|+||+|.||++|+++||||||||||+...+.+||
T Consensus 216 -----~~~~~~~~~~~sA~eL~~aGV~fk~~~~~~~~lDv~F~~G~L~IP~L~id~~T~~~lrNLiA~Eq~~~~~~~~vt 290 (391)
T PF03140_consen 216 -----NGEKPPPKRIRSATELREAGVKFKPSETDRSLLDVKFKKGVLEIPPLYIDDNTESLLRNLIAFEQCHPPTGSYVT 290 (391)
T ss_pred -----cccccccccCCCHHHHHhCCcEEeeccCccccccceecCCEEEeCeEEECCcchHHHhHHHHHHHHhccCCchHh
Confidence 000123467999999999999999999874 99999999999999999999999999999999999988899999
Q ss_pred hHHHHHhhccCChhhHHHHHHCCceeccCCChHHHHHHHHHhhcccccCCCCchHHHHHHHHHHHhcCchHHHhHhhccc
Q 009939 406 SFVIFMDNLINSPEDVGYLHYCGIIEHWLGSDAEVADLFNRLCEEVVFDINDSYLSRLSEDVNQYYNHKWNAWRASLRHK 485 (522)
Q Consensus 406 sYv~fM~~LI~t~eDV~lL~~kGII~n~lgsdeeVa~lFn~L~k~v~~d~~~~yl~~v~~~l~~y~~~rw~~w~a~l~~~ 485 (522)
||+.||++||+|++||++|+++|||+|++|||+|||+|||+||++++++.+++||.+++++||+||++||++|+|+++|+
T Consensus 291 sY~~fm~~Li~t~~DV~lL~~kgIi~~~l~~d~eva~~F~~L~~~v~~~~~~~~~~~v~~~l~~~~~~~~~~~~a~l~~~ 370 (391)
T PF03140_consen 291 SYVFFMDSLINTPEDVELLRRKGIIVNWLGSDEEVAKLFNGLCKGVVFDVDDSYYSDVCEDLNKYYQSRWNRWWAWLRRK 370 (391)
T ss_pred HHHHHHHHHhCcHhhHHHHHhCCeEecCCCCcHHHHHHHHHHhccCCCCCccHHHHHHHHHHHHHhcChHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999987789999999999999999999999999999
Q ss_pred cccchhHHHHHHHHHHHHHHH
Q 009939 486 YFNNPWAIISLVAAVVLLLLT 506 (522)
Q Consensus 486 yf~nPW~~is~vaAvvlL~lT 506 (522)
||+|||+++|++||+++|+||
T Consensus 371 yf~~pw~~is~~aa~~ll~lT 391 (391)
T PF03140_consen 371 YFSNPWTFISLVAAIILLLLT 391 (391)
T ss_pred hcCCcHHHHHHHHHHHHHHhC
Confidence 999999999999999999998
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 522 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 5e-09 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 6e-08 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 58.3 bits (140), Expect = 5e-09
Identities = 57/385 (14%), Positives = 120/385 (31%), Gaps = 105/385 (27%)
Query: 4 VFNKELLSWY------LITVKLRETVESGIPKTTTSRAASEQQQ--TPSESLHI---VIG 52
V N + + + L+T + ++ + TTT + TP E + +
Sbjct: 253 VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD 312
Query: 53 EDAENC--EDAATSPDSEWVISI-------------------KEKLEQARQ--------D 83
++ E T+P +SI +KL +
Sbjct: 313 CRPQDLPREVLTTNP---RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA 369
Query: 84 DEAGSWAKLSIY----KVPQHLRE---GGDDRAYVPQIVSLGPYHHGKKRLRQMDRHKWR 136
+ + +LS++ +P L ++ V +V+ H K L + +
Sbjct: 370 EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNK--LH--KYSLVEKQPKEST 425
Query: 137 -SLHHVLKRNSQDIKIYLDSMKELEEKARACYEGPISLSSNDFAEMMVLDGCFVLELFRG 195
S+ + ++K+ L++ L Y P + S+D LD F
Sbjct: 426 ISIPSIY----LELKVKLENEYALHRSIVDHYNIPKTFDSDDLIP-PYLDQYF------- 473
Query: 196 ASEGFTRLGYPRNDPVFAMRGSMHSIQRDMIMLENQLPLFILD--------RLLGLQFGK 247
++ +G+ H + + LD R +
Sbjct: 474 ----YSHIGH-------------HLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNA 516
Query: 248 PEQKGLVAKLA-LRFFDPLMPTDEPLTKGERNKLESSLGNANFFDPLSDQCGLHCLDVFR 306
++ L L+F+ P + ++P + +L +++ + F P + + +
Sbjct: 517 S--GSILNTLQQLKFYKPYICDNDP----KYERLVNAILD---FLP---KIEENLICSKY 564
Query: 307 KSLLRSGPKPEPPKIWIKRWSQTNR 331
LLR E I+ + Q R
Sbjct: 565 TDLLRIALMAEDEAIFEEAHKQVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00