Citrus Sinensis ID: 009939


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520--
MVAVFNKELLSWYLITVKLRETVESGIPKTTTSRAASEQQQTPSESLHIVIGEDAENCEDAATSPDSEWVISIKEKLEQARQDDEAGSWAKLSIYKVPQHLREGGDDRAYVPQIVSLGPYHHGKKRLRQMDRHKWRSLHHVLKRNSQDIKIYLDSMKELEEKARACYEGPISLSSNDFAEMMVLDGCFVLELFRGASEGFTRLGYPRNDPVFAMRGSMHSIQRDMIMLENQLPLFILDRLLGLQFGKPEQKGLVAKLALRFFDPLMPTDEPLTKGERNKLESSLGNANFFDPLSDQCGLHCLDVFRKSLLRSGPKPEPPKIWIKRWSQTNRVADKRRQQLIHCVTELREAGVKFRKRKTDRFWDIKFKNGILSIPRLFVHDGTKSLFLNLIAFEQCHFDCSNDITSFVIFMDNLINSPEDVGYLHYCGIIEHWLGSDAEVADLFNRLCEEVVFDINDSYLSRLSEDVNQYYNHKWNAWRASLRHKYFNNPWAIISLVAAVVLLLLTFAQTFYGVYGYYRPVS
ccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccccEEEEcccccccccccccccccEEEEcccccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHccccHHHHHHHHHHHccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHcccEEEEccccccccccccccEEEcccEEEccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHcccHHHHHHHHHccccccccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHcccHHHHHHHHcHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccc
cEEEEcHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccEEEccccccccccccccccHHHHHHHHHHHHccccHHcccccccEEEEccHHHHHcccccccccEEEEEcccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHcccccccccHHccccHHcccccccccccccccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHcccEEEEcccccEEEEEEcccEEEccEEEEcccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHcccHHHHHHHHHcccEEcccccHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
MVAVFNKELLSWYLITVKLREtvesgipktttsraaseqqqtpseslhivigedaencedaatspdsewVISIKEKLEQARqddeagswaklSIYKvpqhlreggddrayvpqivslgpyhhgkkRLRQMDRHKWRSLHHVLKRNSQDIKIYLDSMKELEEKARAcyegpislssndfAEMMVLDGCFVLELFRgasegftrlgyprndpvfamrgsmHSIQRDMIMLENQLPLFILDRllglqfgkpeqKGLVAKLALrffdplmptdepltkgernklesslgnanffdplsdqcglhclDVFRKsllrsgpkpeppkiwiKRWSQTNRVADKRRQQLIHCVTELREAGVKFrkrktdrfwdikfkngilsiprlfvhdgtkSLFLNLIAFEQchfdcsndiTSFVIFMDnlinspedvgylHYCGIIEHWLGSDAEVADLFNRLCEEVVFDINDSYLSRLSEDVNQYYNHKWNAWRASLRHKYFNNPWAIISLVAAVVLLLLTFAQTFYgvygyyrpvs
MVAVFNKELLSWYLITVKLRETvesgipktttsraaseqqqtpsESLHIVIGEDAENCEDAATSPDSEWVISIKEKLEQarqddeagswaklsIYKVPQHLREGGDDRAYVPQIVSLGPYHHGKKRLRQMDRHKWRSLhhvlkrnsqdiKIYLDSMKELEEKARACYEGPISLSSNDFAEMMVLDGCFVLELFRGASEGFTRLGYPRNDPVFAMRGSMHSIQRDMIMLENQLPLFILDRLLGLQFGKPEQKGLVAKLALRFFDPLMPTDEPLTKGERNKLESSLGNANFFDPLSDQCGLHCLDVFRKSllrsgpkpeppkiwikrwsqtnrvadkrRQQLIHCVTelreagvkfrkrktdrfwdikfkngilsiprlFVHDGTKSLFLNLIAFEQCHFDCSNDITSFVIFMDNLINSPEDVGYLHYCGIIEHWLGSDAEVADLFNRLCEEVVFDINDSYLSRLSEDVNQYYNHKWNAWRASLRHKYFNNPWAIISLVAAVVLLLLTFAQTFYGVYGYYRPVS
MVAVFNKELLSWYLITVKLRETVESGIPKTTTSRAASEQQQTPSESLHIVIGEDAENCEDAATSPDSEWVISIKEKLEQARQDDEAGSWAKLSIYKVPQHLREGGDDRAYVPQIVSLGPYHHGKKRLRQMDRHKWRSLHHVLKRNSQDIKIYLDSMKELEEKARACYEGPISLSSNDFAEMMVLDGCFVLELFRGASEGFTRLGYPRNDPVFAMRGSMHSIQRDMIMLENQLPLFILDRLLGLQFGKPEQKGLVAKLALRFFDPLMPTDEPLTKGERNKLESSLGNANFFDPLSDQCGLHCLDVFRKSLLRSGPKPEPPKIWIKRWSQTNRVADKRRQQLIHCVTELREAGVKFRKRKTDRFWDIKFKNGILSIPRLFVHDGTKSLFLNLIAFEQCHFDCSNDITSFVIFMDNLINSPEDVGYLHYCGIIEHWLGSDAEVADLFNRLCEEVVFDINDSYLSRLSEDVNQYYNHKWNAWRASLRHKYFNNPWAIISlvaavvllllTFAQTFYGVYGYYRPVS
**AVFNKELLSWYLITVKLRETV*********************************************WVIS***************SWAKLSIYKVPQHLREGGDDRAYVPQIVSLGPYHHGKKRLRQMDRHKWRSLHHVLKRNSQDIKIYLDSMKELEEKARACYEGPISLSSNDFAEMMVLDGCFVLELFRGASEGFTRLGYPRNDPVFAMRGSMHSIQRDMIMLENQLPLFILDRLLGLQFGKPEQKGLVAKLALRFFDPLM*******************NANFFDPLSDQCGLHCLDVFRKSLL*********KIWIKRWSQTNRVADKRRQQLIHCVTELREAGVKFRKRKTDRFWDIKFKNGILSIPRLFVHDGTKSLFLNLIAFEQCHFDCSNDITSFVIFMDNLINSPEDVGYLHYCGIIEHWLGSDAEVADLFNRLCEEVVFDINDSYLSRLSEDVNQYYNHKWNAWRASLRHKYFNNPWAIISLVAAVVLLLLTFAQTFYGVYGYYR***
MVAVFNKELLSWYLITVKL*****************************************************IKEKL***********WAKLSIYKVPQHLREGGDDRAYVPQIVSLGPYHHGKKRLRQMDRHKWRSLHHVLKRNSQDIKIYLDSMKELEEKARACYEGPISLSSNDFAEMMVLDGCFVLELFRGASEGFTRLGYPRNDPVFAMRGSMHSIQRDMIMLENQLPLFILDRLLGLQFGKPEQKGLVAKLALRFFDPLMPTDEPLTKGERNKLESSLGNANFFDPLSDQCGLHCLDVFRKSL**************************RRQQLIHCVTELREAGVKFRKRKTDRFWDIKFKNGILSIPRLFVHDGTKSLFLNLIAFEQCHFDCSNDITSFVIFMDNLINSPEDVGYLHYCGIIEHWLGSDAEVADLFNRLCEEVVFDINDSYLSRLSEDVNQYYNHKWNAWRASLRHKYFNNPWAIISLVAAVVLLLLTFAQTFYGVYGYYRP**
MVAVFNKELLSWYLITVKLRETVESGI******************SLHIVIGEDAEN*********SEWVISIKEKLE********GSWAKLSIYKVPQHLREGGDDRAYVPQIVSLGPYHHGKKRLRQMDRHKWRSLHHVLKRNSQDIKIYLDSMKELEEKARACYEGPISLSSNDFAEMMVLDGCFVLELFRGASEGFTRLGYPRNDPVFAMRGSMHSIQRDMIMLENQLPLFILDRLLGLQFGKPEQKGLVAKLALRFFDPLMPTDEPLTKGERNKLESSLGNANFFDPLSDQCGLHCLDVFRKSLLRSGPKPEPPKIWIKRWSQTNRVADKRRQQLIHCVTELREAGVKFRKRKTDRFWDIKFKNGILSIPRLFVHDGTKSLFLNLIAFEQCHFDCSNDITSFVIFMDNLINSPEDVGYLHYCGIIEHWLGSDAEVADLFNRLCEEVVFDINDSYLSRLSEDVNQYYNHKWNAWRASLRHKYFNNPWAIISLVAAVVLLLLTFAQTFYGVYGYYRPVS
MVAVFNKELLSWYLITVKLRETVE******************************************SEWVISIKEKLEQARQDDEAGSWAKLSIYKVPQHLREGGDDRAYVPQIVSLGPYHHGKKRLRQMDRHKWRSLHHVLKRNSQDIKIYLDSMKELEEKARACYEGPISLSSNDFAEMMVLDGCFVLELFRGASEGFTRLGYPRNDPVFAMRGSMHSIQRDMIMLENQLPLFILDRLLGLQFGKPEQKGLVAKLALRFFDPLMPTDEPLTKGERNKLESSLGNANFFDPLSDQCGLHCLDVFRKSLLRSG************************QQLIHCVTELREAGVKFRKRKTDRFWDIKFKNGILSIPRLFVHDGTKSLFLNLIAFEQCHFDCSNDITSFVIFMDNLINSPEDVGYLHYCGIIEHWLGSDAEVADLFNRLCEEVVFDINDSYLSRLSEDVNQYYNHKWNAWRASLRHKYFNNPWAIISLVAAVVLLLLTFAQTFYGVYGYYRPV*
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MVAVFNKELLSWYLITVKLRETVESGIPKTTTSRAASEQQQTPSESLHIVIGEDAENCEDAATSPDSEWVISIKEKLEQARQDDEAGSWAKLSIYKVPQHLREGGDDRAYVPQIVSLGPYHHGKKRLRQMDRHKWRSLHHVxxxxxxxxxxxxxxxxxxxxxARACYEGPISLSSNDFAEMMVLDGCFVLELFRGASEGFTRLGYPRNDPVFAMRGSMHSIQRDMIMLENQLPLFILDRLLGLQFGKPEQKGLVAKLALRFFDPLMPTDEPLTKGERNKLESSLGNANFFDPLSDQCGLHCLDVFRKSLLRSGPKPEPPKIWIKRWSQTNRVADKRRQQLIHCVTELREAGVKFRKRKTDRFWDIKFKNGILSIPRLFVHDGTKSLFLNLIAFEQCHFDCSNDITSFVIFMDNLINSPEDVGYLHYCGIIEHWLGSDAEVADLFNRLCEEVVFDINDSYLSRLSEDVNQYYNHKWNAWRASLRHKYFNNPWAIISLVAAVVLLLLTFAQTFYGVYGYYRPVS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query522 2.2.26 [Sep-21-2011]
Q9SD53476 UPF0481 protein At3g47200 no no 0.779 0.855 0.316 4e-54
P0C897529 Putative UPF0481 protein no no 0.323 0.319 0.289 6e-15
>sp|Q9SD53|Y3720_ARATH UPF0481 protein At3g47200 OS=Arabidopsis thaliana GN=At3g47200 PE=1 SV=1 Back     alignment and function desciption
 Score =  213 bits (541), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 141/446 (31%), Positives = 235/446 (52%), Gaps = 39/446 (8%)

Query: 85  EAGSWAKLSIYKVPQHLREGGDDRAYVPQIVSLGPYHHGKKRLRQMDRHKWRSLHHVL-- 142
           E+       I++VP+      + +AY P++VS+GPYH+G+K L+ + +HK R L   L  
Sbjct: 39  ESAGKESCCIFRVPESFV-ALNPKAYKPKVVSIGPYHYGEKHLQMIQQHKPRLLQLFLDE 97

Query: 143 -KRNSQDIKIYLDSMKELEEKARACYEGPISLSSNDFAEMMVLDGCFVLELFRGASEGFT 201
            K+   +  + + ++ +LE+K R  Y   +  + +D   MMVLDGCF+L +F   S G  
Sbjct: 98  AKKKDVEENVLVKAVVDLEDKIRKSYSEELK-TGHDLMFMMVLDGCFILMVFLIMS-GNI 155

Query: 202 RLGYPRNDPVFAMRGSMHSIQRDMIMLENQLPLFILDRL-LGLQFGKPEQKGLVAKLALR 260
            L     DP+F++   + SIQ D+++LENQ+P F+L  L +G + G       + ++A  
Sbjct: 156 ELS---EDPIFSIPWLLSSIQSDLLLLENQVPFFVLQTLYVGSKIGVSSD---LNRIAFH 209

Query: 261 FFDPLMPTDEPLTKGERNKLESSLGNANFFDPLSDQCGLHCLDVFRKSLL---RSGPKPE 317
           FF    P D+  +  E+++               +    H LD+ R++ L       K  
Sbjct: 210 FFK--NPIDKEGSYWEKHR---------------NYKAKHLLDLIRETFLPNTSESDKAS 252

Query: 318 PPKIWIK-RWSQTNRV--ADKRRQQLIHCVTELREAGVKFRKR--KTDRFWDIKFKNGIL 372
            P + ++    ++  V   D +   LI     LR  G+KFR R  K D   +++ K   L
Sbjct: 253 SPHVQVQLHEGKSGNVPSVDSKAVPLILSAKRLRLQGIKFRLRRSKEDSILNVRLKKNKL 312

Query: 373 SIPRLFVHDGTKSLFLNLIAFEQCHFDCSNDITSFVIFMDNLINSPEDVGYLHYCG-IIE 431
            IP+L       S FLN +AFEQ + D SN+IT++++FM  L+N+ EDV +L     IIE
Sbjct: 313 QIPQLRFDGFISSFFLNCVAFEQFYTDSSNEITTYIVFMGCLLNNEEDVTFLRNDKLIIE 372

Query: 432 HWLGSDAEVADLFNRLCEEVVFDINDSYLSRLSEDVNQYYNHKWNAWRASLRHKYFNNPW 491
           +  GS+ EV++ F  + ++VVF+++ SYL+ + + VN+Y    +N   A  RH +F +PW
Sbjct: 373 NHFGSNNEVSEFFKTISKDVVFEVDTSYLNNVFKGVNEYTKKWYNGLWAGFRHTHFESPW 432

Query: 492 AIISLVAAVVLLLLTFAQTFYGVYGY 517
             +S  A + ++LLT  Q+   +  Y
Sbjct: 433 TFLSSCAVLFVILLTMLQSTVAILSY 458





Arabidopsis thaliana (taxid: 3702)
>sp|P0C897|Y3264_ARATH Putative UPF0481 protein At3g02645 OS=Arabidopsis thaliana GN=At3g02645 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query522
225438811527 PREDICTED: UPF0481 protein At3g47200-lik 0.992 0.982 0.776 0.0
224096712533 predicted protein [Populus trichocarpa] 0.996 0.975 0.771 0.0
255567871531 conserved hypothetical protein [Ricinus 0.996 0.979 0.784 0.0
147810955 752 hypothetical protein VITISV_038869 [Viti 0.955 0.663 0.748 0.0
357482771534 hypothetical protein MTR_5g016570 [Medic 0.994 0.971 0.781 0.0
388501700534 unknown [Medicago truncatula] 0.994 0.971 0.779 0.0
356495484490 PREDICTED: UPF0481 protein At3g47200-lik 0.934 0.995 0.768 0.0
449448496488 PREDICTED: UPF0481 protein At3g47200-lik 0.931 0.995 0.730 0.0
449517373488 PREDICTED: LOW QUALITY PROTEIN: UPF0481 0.931 0.995 0.728 0.0
15229680531 uncharacterized protein [Arabidopsis tha 0.982 0.966 0.683 0.0
>gi|225438811|ref|XP_002278393.1| PREDICTED: UPF0481 protein At3g47200-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  870 bits (2247), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 410/528 (77%), Positives = 463/528 (87%), Gaps = 10/528 (1%)

Query: 1   MVAVFNKELLSWYLITVKLRETVESGIPK---TTTSRAASE-----QQQTPSESLHIVIG 52
           MVAVFNKELLSWYLIT+KL+ETVE+GIP    T TS  + E     Q Q P++SL IV+ 
Sbjct: 1   MVAVFNKELLSWYLITLKLKETVEAGIPNLPGTPTSARSIELSEAPQHQQPNDSLQIVVN 60

Query: 53  EDAENCEDAATSPDSEWVISIKEKLEQARQDDEAGSWAKLSIYKVPQHLREGGDDRAYVP 112
            D +N  +     DSEWVISIKEKLEQA QDD A SWAKL IY++P +LREG DD+AY+P
Sbjct: 61  GDGQNFAEETNPSDSEWVISIKEKLEQAHQDDAADSWAKLCIYRLPHYLREG-DDKAYIP 119

Query: 113 QIVSLGPYHHGKKRLRQMDRHKWRSLHHVLKRNSQDIKIYLDSMKELEEKARACYEGPIS 172
           QIVSLGPYHHG++RLR MDRHKWRSLHH+LKR + DI+IYLD+MKELEEKARACYEG I 
Sbjct: 120 QIVSLGPYHHGRRRLRNMDRHKWRSLHHILKRTNHDIEIYLDAMKELEEKARACYEGTIC 179

Query: 173 LSSNDFAEMMVLDGCFVLELFRGASEGFTRLGYPRNDPVFAMRGSMHSIQRDMIMLENQL 232
           LSSN+F EMMVLDGCF+LELFRG + GF  LGY RNDPVFA+RGSMHSIQRDMIMLENQ+
Sbjct: 180 LSSNEFVEMMVLDGCFILELFRGVAGGFKHLGYARNDPVFAIRGSMHSIQRDMIMLENQI 239

Query: 233 PLFILDRLLGLQFGKPEQKGLVAKLALRFFDPLMPTDEPLTKGERNKLESSLGNANFFDP 292
           PLF+L+RLLG+Q G+PEQKGLVAKLALRFFDPLMPTDEPLTK +RN+LESSLG    FDP
Sbjct: 240 PLFVLERLLGIQLGQPEQKGLVAKLALRFFDPLMPTDEPLTKSDRNRLESSLGYTTTFDP 299

Query: 293 LSDQCGLHCLDVFRKSLLRSGPKPEPPKIWIKRWSQTNRVADKRRQQLIHCVTELREAGV 352
           L DQ GLHCL+VFR+SLLR+GP+P  P+IW+KRWS +NRVADKRRQQLIHCVT+LREAG+
Sbjct: 300 LGDQGGLHCLEVFRRSLLRTGPRP-VPRIWMKRWSHSNRVADKRRQQLIHCVTQLREAGI 358

Query: 353 KFRKRKTDRFWDIKFKNGILSIPRLFVHDGTKSLFLNLIAFEQCHFDCSNDITSFVIFMD 412
           KF+KRKTDRFWDIKFKNGIL IPRL +HDGTKSLFLNLIAFEQCH DCSNDITS+VIFMD
Sbjct: 359 KFKKRKTDRFWDIKFKNGILRIPRLLIHDGTKSLFLNLIAFEQCHLDCSNDITSYVIFMD 418

Query: 413 NLINSPEDVGYLHYCGIIEHWLGSDAEVADLFNRLCEEVVFDINDSYLSRLSEDVNQYYN 472
           +LINSPEDVGYLHYCGI+EHWLGS++EVADLFNRLC+EVVFDINDSYLS LSE VN+YYN
Sbjct: 419 SLINSPEDVGYLHYCGIMEHWLGSESEVADLFNRLCQEVVFDINDSYLSSLSEQVNKYYN 478

Query: 473 HKWNAWRASLRHKYFNNPWAIISLVAAVVLLLLTFAQTFYGVYGYYRP 520
           H+WNAWRASL+H YF++PW IIS VAAVVLL LTFAQTFY VY YYRP
Sbjct: 479 HRWNAWRASLKHNYFSSPWTIISFVAAVVLLALTFAQTFYAVYSYYRP 526




Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224096712|ref|XP_002310707.1| predicted protein [Populus trichocarpa] gi|222853610|gb|EEE91157.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255567871|ref|XP_002524913.1| conserved hypothetical protein [Ricinus communis] gi|223535748|gb|EEF37410.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|147810955|emb|CAN59797.1| hypothetical protein VITISV_038869 [Vitis vinifera] Back     alignment and taxonomy information
>gi|357482771|ref|XP_003611672.1| hypothetical protein MTR_5g016570 [Medicago truncatula] gi|355513007|gb|AES94630.1| hypothetical protein MTR_5g016570 [Medicago truncatula] Back     alignment and taxonomy information
>gi|388501700|gb|AFK38916.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|356495484|ref|XP_003516607.1| PREDICTED: UPF0481 protein At3g47200-like [Glycine max] Back     alignment and taxonomy information
>gi|449448496|ref|XP_004142002.1| PREDICTED: UPF0481 protein At3g47200-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449517373|ref|XP_004165720.1| PREDICTED: LOW QUALITY PROTEIN: UPF0481 protein At3g47200-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|15229680|ref|NP_190581.1| uncharacterized protein [Arabidopsis thaliana] gi|6522933|emb|CAB62120.1| putative protein [Arabidopsis thaliana] gi|60547801|gb|AAX23864.1| hypothetical protein At3g50120 [Arabidopsis thaliana] gi|332645107|gb|AEE78628.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query522
TAIR|locus:2083078531 AT3G50120 "AT3G50120" [Arabido 0.982 0.966 0.672 6.1e-197
TAIR|locus:2074755541 AT3G50170 "AT3G50170" [Arabido 0.980 0.946 0.619 4.6e-176
TAIR|locus:2083093564 AT3G50130 [Arabidopsis thalian 0.858 0.794 0.660 1.1e-168
TAIR|locus:2083108539 AT3G50140 [Arabidopsis thalian 0.860 0.833 0.623 1.3e-158
TAIR|locus:2083123509 AT3G50150 [Arabidopsis thalian 0.865 0.888 0.593 8.8e-150
TAIR|locus:2074760588 AT3G50180 [Arabidopsis thalian 0.446 0.396 0.604 8.1e-140
TAIR|locus:2074770493 AT3G50190 [Arabidopsis thalian 0.480 0.509 0.553 8.1e-138
TAIR|locus:2083138503 AT3G50160 "AT3G50160" [Arabido 0.417 0.433 0.583 9.9e-131
TAIR|locus:2044918448 AT2G36430 "AT2G36430" [Arabido 0.406 0.473 0.343 2.3e-68
TAIR|locus:2171127440 AT5G22540 "AT5G22540" [Arabido 0.413 0.490 0.342 4.8e-56
TAIR|locus:2083078 AT3G50120 "AT3G50120" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1907 (676.4 bits), Expect = 6.1e-197, P = 6.1e-197
 Identities = 363/540 (67%), Positives = 430/540 (79%)

Query:     1 MVAVFNKELLSWYLITVKLRETVES---------------GIPKTTTS---RAASEQQQT 42
             MVAVF K++LSWYL+T+K+RE +E+               G+P+ T S   +     QQT
Sbjct:     1 MVAVFYKDMLSWYLLTLKIREKLETQNQESVLVNQDQNLPGLPEITRSDQDQNIHNNQQT 60

Query:    43 PSESLHIVIGEDAENCEDAATSPDSEWVISIKEKLEQARQDDEAGSWAKLSIYKVPQHLR 102
              S+    VI E  ++  D       +WVISI +KLEQA +DD+   W KL IY+VP +L+
Sbjct:    61 QSDPAIYVIKESPKDSRD-------DWVISITDKLEQAHRDDDTTLWGKLCIYRVPYYLQ 113

Query:   103 EGGDDRAYVPQIVSLGPYHHGKKRLRQMDRHKWRSLHHVLKRNSQDIKIYLDSMKELEEK 162
             E  D+++Y PQ VSLGPYHHGKKRLR MDRHKWR+++ VLKR +Q IK+Y+D+M+ELEEK
Sbjct:   114 EN-DNKSYFPQTVSLGPYHHGKKRLRSMDRHKWRAVNRVLKRTNQGIKMYIDAMRELEEK 172

Query:   163 ARACYEGPISLSSNDFAEMMVLDGCFVLELFRGASEGFTRLGYPRNDPVFAMRGSMHSIQ 222
             ARACYEGP+SLSSN+F EM+VLDGCFVLELFRGA EGFT LGY RNDPVFAMRGSMHSIQ
Sbjct:   173 ARACYEGPLSLSSNEFIEMLVLDGCFVLELFRGAVEGFTELGYARNDPVFAMRGSMHSIQ 232

Query:   223 RDMIMLENQLPLFILDRLLGLQFGKPEQKGLVAKLALRFFDPLMPTDEPLTKGERNKLES 282
             RDM+MLENQLPLF+L+RLL LQ G   Q GLVA+LA+RFFDPLMPTDEPLTK  ++KLE+
Sbjct:   233 RDMVMLENQLPLFVLNRLLELQLGTRNQTGLVAQLAIRFFDPLMPTDEPLTKSGQSKLEN 292

Query:   283 SLGNANFFDPLSDQCGLHCLDVFRKSLLRSGPKPEPPKIWIKRWSQTNRVADKRRQQLIH 342
             SL     FDP +D   LHCLDVFR+SLLRS PKPEP ++  KRWS+  RVADKRRQQLIH
Sbjct:   293 SLARDKSFDPFADMGELHCLDVFRRSLLRSSPKPEP-RLTRKRWSRNTRVADKRRQQLIH 351

Query:   343 CVTELREAGVKFRKRKTDRFWDIKFKNGILSIPRLFVHDGTKSLFLNLIAFEQCHFDCSN 402
             CVTEL+EAG+KFR+RKTDRFWD++FKNG L IPRL +HDGTKSLFLNLIAFEQCH D SN
Sbjct:   352 CVTELKEAGIKFRRRKTDRFWDMQFKNGYLEIPRLLIHDGTKSLFLNLIAFEQCHIDSSN 411

Query:   403 DITSFVIFMDNLINSPEDVGYLHYCGIIEHWLGSDAEVADLFNRLCEEVVFDINDSYLSR 462
             DITS++IFMDNLI+S EDV YLHYCGIIEHWLGSD+EVADLFNRLC+EVVFD  DSYLSR
Sbjct:   412 DITSYIIFMDNLIDSHEDVSYLHYCGIIEHWLGSDSEVADLFNRLCQEVVFDTEDSYLSR 471

Query:   463 LSEDVNQYYNHKWNAWRASLRHKYFNNPWAIISXXXXXXXXXXTFAQTFYGVYGYYRPVS 522
             LS +VN+YY+HKWNAWRA+L+HKYFNNPWAI+S          TF+Q+FY VY YY+P S
Sbjct:   472 LSIEVNRYYDHKWNAWRATLKHKYFNNPWAIVSFCAAVILLVLTFSQSFYAVYAYYKPPS 531




GO:0003674 "molecular_function" evidence=ND
GO:0005886 "plasma membrane" evidence=ISM
GO:0008150 "biological_process" evidence=ND
TAIR|locus:2074755 AT3G50170 "AT3G50170" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2083093 AT3G50130 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2083108 AT3G50140 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2083123 AT3G50150 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2074760 AT3G50180 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2074770 AT3G50190 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2083138 AT3G50160 "AT3G50160" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2044918 AT2G36430 "AT2G36430" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2171127 AT5G22540 "AT5G22540" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Fail to connect to STRING server


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query522
pfam03140387 pfam03140, DUF247, Plant protein of unknown functi 0.0
>gnl|CDD|217385 pfam03140, DUF247, Plant protein of unknown function Back     alignment and domain information
 Score =  529 bits (1365), Expect = 0.0
 Identities = 200/420 (47%), Positives = 262/420 (62%), Gaps = 40/420 (9%)

Query: 94  IYKVPQHLREGGDDRAYVPQIVSLGPYHHGKKRLRQMDRHKWRSLHHVLKR--NSQDIKI 151
           IY+VP  LR+  +  AY P++VS+GPYHHGK  LR M+ HKWR L+  L R      ++ 
Sbjct: 1   IYRVPARLRDV-NPEAYEPRVVSIGPYHHGKPHLRAMEEHKWRYLNRFLDRTGRGLSLED 59

Query: 152 YLDSMKELEEKARACYEGPIS-LSSNDFAEMMVLDGCFVLELFRGASEGFTRLGYPRNDP 210
            L +++ELEE+ARACY   +  +SS +F EM++LDGCF+LELF   SEG     Y  NDP
Sbjct: 60  LLAAVRELEEEARACYAEDVDWMSSEEFVEMLLLDGCFILELFLRLSEGI----YGENDP 115

Query: 211 VFAMRGSMHSIQRDMIMLENQLPLFILDRLLGLQFGKPEQKGLVAKLALRFFD---PLMP 267
           +FA R  +  I+RD+++LENQ+P F+L++L  L  G+ + K  +  LALRFF     L+P
Sbjct: 116 LFARRWLLSLIRRDLLLLENQIPFFVLEKLFELLTGRQDVKTSLNDLALRFFYDCESLLP 175

Query: 268 TDEPLTKGERNKLESSLGNANFFDPLSDQCGLHCLDVFRKSLLRSGPKPEPPKIWIKRWS 327
            D+ + +                         H LD+ R+SLL S      P    +   
Sbjct: 176 PDDLIEESN---------------------VHHLLDLLRRSLLPSTSPDPTPAAPPRDNG 214

Query: 328 QTNRVADKRRQQLIHCVTELREAGVKFRKRKTDR-FWDIKFKNGILSIPRLFVHDGTKSL 386
                      +LI   TELREAGV+F++RKT     D+ FK G+L IPRL V DGT+SL
Sbjct: 215 -------AATPRLIPSATELREAGVRFKRRKTASCILDVSFKRGVLEIPRLAVDDGTESL 267

Query: 387 FLNLIAFEQCHFDCSNDITSFVIFMDNLINSPEDVGYLHYCGIIEHWLGSDAEVADLFNR 446
             NLIAFEQCH    N +TS+V FMDNLIN+ EDV  L   GI+E+ LGSD EVA  FNR
Sbjct: 268 LRNLIAFEQCHGGSGNHVTSYVAFMDNLINTAEDVALLRRKGILENLLGSDEEVAKFFNR 327

Query: 447 LCEEVVFDINDSYLSRLSEDVNQYYNHKWNAWRASLRHKYFNNPWAIISLVAAVVLLLLT 506
           LC  VVFD++DSYLS + EDVN+Y   +WN W+A+LR KYF+NPWA ISL+AAVVLL+LT
Sbjct: 328 LCRGVVFDVDDSYLSGVFEDVNRYCRSRWNRWKATLRRKYFSNPWAAISLLAAVVLLVLT 387


The function of the plant proteins constituting this family is unknown. Length = 387

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 522
PF03140391 DUF247: Plant protein of unknown function; InterPr 100.0
>PF03140 DUF247: Plant protein of unknown function; InterPro: IPR004158 The function of the plant proteins constituting this family is unknown Back     alignment and domain information
Probab=100.00  E-value=1.9e-106  Score=854.31  Aligned_cols=383  Identities=51%  Similarity=0.903  Sum_probs=334.0

Q ss_pred             EEecCccccccCCCCCcccceeeecCCCCCChhhccHHHHHHHHHHHHHhhcC---ccHHHHHHHHHHHHHHHHhccCCC
Q 009939           94 IYKVPQHLREGGDDRAYVPQIVSLGPYHHGKKRLRQMDRHKWRSLHHVLKRNS---QDIKIYLDSMKELEEKARACYEGP  170 (522)
Q Consensus        94 I~rVP~~lR~~~n~~aY~P~vVSIGPyHhg~~~L~~mE~~K~~~l~~~l~r~~---~~l~~~~~~i~~~e~~aR~cY~~~  170 (522)
                      |||||+++|+ +|+++|+|++|||||||||+++|+.||++||+|+++|++|++   .++++++++|+++|++||+||+++
T Consensus         1 I~rVP~~lr~-~~~~~Y~P~~VsIGPyH~g~~~L~~mE~~K~~~l~~~l~~~~~~~~~l~~~~~~i~~~e~~~R~~Y~~~   79 (391)
T PF03140_consen    1 IYRVPESLRD-VNPKAYTPQVVSIGPYHHGKPDLQEMEEHKLRYLHRFLKRSGAPAESLEDYVEAIRSLEEEARACYAED   79 (391)
T ss_pred             CcCCCHHHcc-CCchhcCCceEEeCCCCCCchhhhhhHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHHhccc
Confidence            8999999999 999999999999999999999999999999999999999998   899999999999999999999999


Q ss_pred             CC-CChHHHHHHHHHhHHHHHHHhhhhccCcccCCCCCCCc-ccccccchhhhhhhhhHhcccchHHHHHHHhhhhcC-C
Q 009939          171 IS-LSSNDFAEMMVLDGCFVLELFRGASEGFTRLGYPRNDP-VFAMRGSMHSIQRDMIMLENQLPLFILDRLLGLQFG-K  247 (522)
Q Consensus       171 i~-~~~~eF~~MmllDGCFiLe~l~~~~~~~~~~~~~~~dp-~~~~~~~~~~i~~DllLLENQIPffVL~~L~~l~~~-~  247 (522)
                      ++ +++++|++||++|||||||+|+....     +...+|| ++..+|.+..|++||+|||||||||||++||++..+ .
T Consensus        80 ~~~~~~~~f~~MmllDgCFlLe~~~~~~~-----~~~~~d~~~~~~~~~~~~i~~Dl~LLENQIPffVL~~L~~l~~~~~  154 (391)
T PF03140_consen   80 IDDMSSDEFVEMMLLDGCFLLEFFLRYSR-----SDGENDPGIFSRPWLLSAIRRDLLLLENQIPFFVLEKLFELLFGSK  154 (391)
T ss_pred             ccccCHHHHHHHHHHHHHHHHHHHHhhhh-----ccccccccccccccccccchhheeeecccchHHHHHHHHHHhcccc
Confidence            97 99999999999999999999998765     2235688 888899999999999999999999999999999873 2


Q ss_pred             CchhhHHHHHHHHhcCCCCCCCCCCcccccchhhhhcCCCCCCCCCCCCCCCchhhhhhhhcccCCCCCCC-Cccchhcc
Q 009939          248 PEQKGLVAKLALRFFDPLMPTDEPLTKGERNKLESSLGNANFFDPLSDQCGLHCLDVFRKSLLRSGPKPEP-PKIWIKRW  326 (522)
Q Consensus       248 ~~~~~~~~~l~~~ff~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~HlLdl~r~~~l~~~~~~~~-~~~~~~~~  326 (522)
                      ......+..++.+||....+...+                  ..+.....+.|+|||+|.+++++.+.+.+ +...... 
T Consensus       155 ~~~~~~l~~l~~~~~~~~~~~~~~------------------~~~~~~~~~~HlL~L~~~~~~p~~~~~~~~~~~~~~~-  215 (391)
T PF03140_consen  155 SDVDESLIDLVLKFFYKHWPSWPP------------------DEPISNPEPHHLLDLLRMSLLPSPPSSSPTPPRPPRS-  215 (391)
T ss_pred             cCccchHHHHHHhHhccccccccc------------------cccccCCCCCChHHHHHHHhccccCCcccCCCCcccc-
Confidence            334456788999999322111100                  01222344699999999999983222111 1111000 


Q ss_pred             cccccccccccccccccHHHHHHcCcEEEecCCCc-ceeeEeCCceEEeceEEeeCCcchhhhhhhHhhhccCCCCCchh
Q 009939          327 SQTNRVADKRRQQLIHCVTELREAGVKFRKRKTDR-FWDIKFKNGILSIPRLFVHDGTKSLFLNLIAFEQCHFDCSNDIT  405 (522)
Q Consensus       327 ~~~~~~~~~~~~~~~~sAteL~eaGVkFk~~~~~~-llDI~F~~G~L~IP~L~Idd~T~~llrNLiAfEqc~~~~~~~vT  405 (522)
                           .........+|||+||++|||+||++++.+ ++||+|++|+|+||+|.||++|+++||||||||||+...+.+||
T Consensus       216 -----~~~~~~~~~~~sA~eL~~aGV~fk~~~~~~~~lDv~F~~G~L~IP~L~id~~T~~~lrNLiA~Eq~~~~~~~~vt  290 (391)
T PF03140_consen  216 -----NGEKPPPKRIRSATELREAGVKFKPSETDRSLLDVKFKKGVLEIPPLYIDDNTESLLRNLIAFEQCHPPTGSYVT  290 (391)
T ss_pred             -----cccccccccCCCHHHHHhCCcEEeeccCccccccceecCCEEEeCeEEECCcchHHHhHHHHHHHHhccCCchHh
Confidence                 000123467999999999999999999874 99999999999999999999999999999999999988899999


Q ss_pred             hHHHHHhhccCChhhHHHHHHCCceeccCCChHHHHHHHHHhhcccccCCCCchHHHHHHHHHHHhcCchHHHhHhhccc
Q 009939          406 SFVIFMDNLINSPEDVGYLHYCGIIEHWLGSDAEVADLFNRLCEEVVFDINDSYLSRLSEDVNQYYNHKWNAWRASLRHK  485 (522)
Q Consensus       406 sYv~fM~~LI~t~eDV~lL~~kGII~n~lgsdeeVa~lFn~L~k~v~~d~~~~yl~~v~~~l~~y~~~rw~~w~a~l~~~  485 (522)
                      ||+.||++||+|++||++|+++|||+|++|||+|||+|||+||++++++.+++||.+++++||+||++||++|+|+++|+
T Consensus       291 sY~~fm~~Li~t~~DV~lL~~kgIi~~~l~~d~eva~~F~~L~~~v~~~~~~~~~~~v~~~l~~~~~~~~~~~~a~l~~~  370 (391)
T PF03140_consen  291 SYVFFMDSLINTPEDVELLRRKGIIVNWLGSDEEVAKLFNGLCKGVVFDVDDSYYSDVCEDLNKYYQSRWNRWWAWLRRK  370 (391)
T ss_pred             HHHHHHHHHhCcHhhHHHHHhCCeEecCCCCcHHHHHHHHHHhccCCCCCccHHHHHHHHHHHHHhcChHHHHHHHHhhh
Confidence            99999999999999999999999999999999999999999999999987789999999999999999999999999999


Q ss_pred             cccchhHHHHHHHHHHHHHHH
Q 009939          486 YFNNPWAIISLVAAVVLLLLT  506 (522)
Q Consensus       486 yf~nPW~~is~vaAvvlL~lT  506 (522)
                      ||+|||+++|++||+++|+||
T Consensus       371 yf~~pw~~is~~aa~~ll~lT  391 (391)
T PF03140_consen  371 YFSNPWTFISLVAAIILLLLT  391 (391)
T ss_pred             hcCCcHHHHHHHHHHHHHHhC
Confidence            999999999999999999998




Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query522
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-08
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 58.3 bits (140), Expect = 5e-09
 Identities = 57/385 (14%), Positives = 120/385 (31%), Gaps = 105/385 (27%)

Query: 4   VFNKELLSWY------LITVKLRETVESGIPKTTTSRAASEQQQ--TPSESLHI---VIG 52
           V N +  + +      L+T + ++  +     TTT  +        TP E   +    + 
Sbjct: 253 VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD 312

Query: 53  EDAENC--EDAATSPDSEWVISI-------------------KEKLEQARQ--------D 83
              ++   E   T+P     +SI                    +KL    +         
Sbjct: 313 CRPQDLPREVLTTNP---RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA 369

Query: 84  DEAGSWAKLSIY----KVPQHLRE---GGDDRAYVPQIVSLGPYHHGKKRLRQMDRHKWR 136
           +    + +LS++     +P  L         ++ V  +V+    H  K  L +    +  
Sbjct: 370 EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNK--LH--KYSLVEKQPKEST 425

Query: 137 -SLHHVLKRNSQDIKIYLDSMKELEEKARACYEGPISLSSNDFAEMMVLDGCFVLELFRG 195
            S+  +      ++K+ L++   L       Y  P +  S+D      LD  F       
Sbjct: 426 ISIPSIY----LELKVKLENEYALHRSIVDHYNIPKTFDSDDLIP-PYLDQYF------- 473

Query: 196 ASEGFTRLGYPRNDPVFAMRGSMHSIQRDMIMLENQLPLFILD--------RLLGLQFGK 247
               ++ +G+             H    +         +  LD        R     +  
Sbjct: 474 ----YSHIGH-------------HLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNA 516

Query: 248 PEQKGLVAKLA-LRFFDPLMPTDEPLTKGERNKLESSLGNANFFDPLSDQCGLHCLDVFR 306
                ++  L  L+F+ P +  ++P    +  +L +++ +   F P   +   + +    
Sbjct: 517 S--GSILNTLQQLKFYKPYICDNDP----KYERLVNAILD---FLP---KIEENLICSKY 564

Query: 307 KSLLRSGPKPEPPKIWIKRWSQTNR 331
             LLR     E   I+ +   Q  R
Sbjct: 565 TDLLRIALMAEDEAIFEEAHKQVQR 589


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00