Citrus Sinensis ID: 009957

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-
MASCSLFHPQTKIKPFNQNHPRLTYHPPTVISCSFSTSNPSSPPPPAAASKNRRAADENIRDEARRQRSTTNNTFSAKYVPFNAGPDSPEFYSLDEIVYRSRSGGLLDVQHDMESLKKFDGAYWRDLFDSRVGKTTWPYGSGVWSKKEWVLPEIDPDDIVSAFEGNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISIAQLVQPIANGAFVLSIDTDFDGCMKLIREVTSELPIYLANSLNSLRLEGQKTAAVEILQQFDWEVPDWVIVPGGNLGNIYAFYKGFKMCHELGLVDRMPRLVCTQAANANPLYLYYKSGWKDFKAVKASTTFASAIQIGDPVSIDRAVYALKNCNGIVEEATEEELMDAMAQADSTGMFICPHTGVALTALIKLRNSGVIGPLDRTVVVSTAHGLKFTQSKIDYHSKEIKDMACRFANPPVQVKADFGAVMDVLKKYLGSKAPI
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccEEcccccccccccccHHHHHcccccHHHHHHHcccccccccccccccHHccccccccccccccccccccccccccHHHHHHHcccccEEEEEcccccccccHHHHHHHHHHHHHHHHHccccccEEEEcccHHHHHHHHHHHHHccccEEEEEccccccHHHHHHHHHcccEEEEEcccHHHHHHHHHHHHHcccEEEcccccccccccHHHHHHHHHHHHccccccEEEEEcccHHHHHHHHHHHHHHHHcccccccccEEEEccccccHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHccccEEEEcHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHccccccccEEEEEcccccccccHHHHHHHcHHHHHHHHccccccccccccHHHHHHHHHHHHcccccc
ccccccccccccccccccccccccccccccEEEEEccccccccccccccccccccccHHHHHHHHHccccccccccEEEEccccccccccccccccEEEEccccccEEEEEcHHHHHHccHHHHHHHHHcccccccccccccHHHHHcccccccccccEEEEcccccccccHHHHHHHHccccEEEEEEccccccccHHcHHHHHHHHHHHHHHHcccccEEEEEEccccHHHHHHHHHHHccccEEEEEccccEHHHHHHHHHHcccEEEEEcccHHHHHHHHHHHHHcccEEEEEcccccccccHHHHHHHHHHHHccccccEEEEEcccHHHHHHHHHHHHHHHHcccccccccEHHEEHcccHHHHHHHHcccccccEccccccEEEEEEccccccHHHHHHHHHHcccEEEEccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccccccccEEEEEEEccccccHHHHHHHccccccccccHcccccccccccHHHHHHHHHHHHcccccc
mascslfhpqtkikpfnqnhprltyhpptviscsfstsnpssppppaaasknrraadENIRDEARRQrsttnntfsakyvpfnagpdspefysldeivyrsrsgglldvQHDMESLKKFDGAYWRdlfdsrvgkttwpygsgvwskkewvlpeidpddivsafegnsnlFWAERFGkqflgmndlwvkhcgishtgsfkdLGMTVLVSQVNrlrkmkrpvvgvgcastgDTSAALSAYCasagipsivflpanKISIAQLVQPIANGAFVLSIDTDFDGCMKLIREVTSELPIYLANSLNSLRLEGQKTAAVEILQQfdwevpdwvivpggnlgNIYAFYKGFKMChelglvdrmprlvctqaananplYLYYKSGWKDFKAVKASTTFAsaiqigdpvSIDRAVYALKNCNGIVEEATEEELMDAMAQAdstgmficphTGVALTALIKLrnsgvigpldrTVVVSTAhglkftqskIDYHSKEIKDMAcrfanppvqvkaDFGAVMDVLKKYLGSKAPI
mascslfhpqtkikpfnqnhPRLTYHPPTVISCSFSTSNPSSppppaaasknrraADENIRDearrqrsttnntfsakyvpfnagpdsPEFYSLDEIVYRSRSGGLLDVQHDMESLKKFDGAYWRDLFDSRVGkttwpygsgvwskkewVLPEIDPDDIVSAFEGNSNLFWAERFGKQFLGMNDLWVKHCGIShtgsfkdlgMTVLVSQVNRLRKMKRPVVGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISIAQLVQPIANGAFVLSIDTDFDGCMKLIREVTSELPIYLANSLNSLRLEGQKTAAVEILQQFDWEVPDWVIVPGGNLGNIYAFYKGFKMCHELGLVDRMPRLVCTQAANANPLYLYYKSGWKDFKAVKASTTFAsaiqigdpvSIDRAVYALKNCNGIVEEATEEELMDAMAQADSTGMFICPHTGVALTALIKLRNSGVIGPLDRTVVVStahglkftqsKIDYHSKEIKDMACRFANPPVQVKADFGAVMDVLKKYLGSKAPI
MASCSLFHPQTKIKPFNQNHPRLTYHPPTVISCSFstsnpssppppaaasknrraaDENIRDEARRQRSTTNNTFSAKYVPFNAGPDSPEFYSLDEIVYRSRSGGLLDVQHDMESLKKFDGAYWRDLFDSRVGKTTWPYGSGVWSKKEWVLPEIDPDDIVSAFEGNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISIAQLVQPIANGAFVLSIDTDFDGCMKLIREVTSELPIYLANSLNSLRLEGQKTAAVEILQQFDWEVPDWVIVPGGNLGNIYAFYKGFKMCHELGLVDRMPRLVCTQAANANPLYLYYKSGWKDFKAVKASTTFASAIQIGDPVSIDRAVYALKNCNGIVEEATEEELMDAMAQADSTGMFICPHTGVALTALIKLRNSGVIGPLDRTVVVSTAHGLKFTQSKIDYHSKEIKDMACRFANPPVQVKADFGAVMDVLKKYLGSKAPI
******************************************************************************YVPF*******EFYSLDEIVYRSRSGGLLDVQHDMESLKKFDGAYWRDLFDSRVGKTTWPYGSGVWSKKEWVLPEIDPDDIVSAFEGNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISIAQLVQPIANGAFVLSIDTDFDGCMKLIREVTSELPIYLANSLNSLRLEGQKTAAVEILQQFDWEVPDWVIVPGGNLGNIYAFYKGFKMCHELGLVDRMPRLVCTQAANANPLYLYY**************TFASAIQIGDPVSIDRAVYALKNCNGIVEEATEEELMDAMAQADSTGMFICPHTGVALTALIKLRNSGVIGPLDRTVVVSTAHGLKFTQSKIDYHSKEIKDMACRFANPPVQVKADFGAVMDVLKKYL******
******************************************************************************YVPFNAGPDSPEFYSLDEIVYRSRSGGLLDVQHDMESLKKFDGAYWRDLFDSRVGKTTWPYGSGVWSKKEWVLPEIDPDDIVSAFEGNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISIAQLVQPIANGAFVLSIDTDFDGCMKLIREVTSELPIYLANSLNSLRLEGQKTAAVEILQQFDWEVPDWVIVPGGNLGNIYAFYKGFKMCHELGLVDRMPRLVCTQAANANPLYLYYKSGWKDFKAVKASTTFASAIQIGDPVSIDRAVYALKNCNGIVEEATEEELMDAMAQADSTGMFICPHTGVALTALIKLRNSGVIGPLDRTVVVSTAHGLKFTQSKIDYHSKEIKDMACRFANPPVQVKADFGAVMDVLKKYLG*****
MASCSLFHPQTKIKPFNQNHPRLTYHPPTVISCS************************************TNNTFSAKYVPFNAGPDSPEFYSLDEIVYRSRSGGLLDVQHDMESLKKFDGAYWRDLFDSRVGKTTWPYGSGVWSKKEWVLPEIDPDDIVSAFEGNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISIAQLVQPIANGAFVLSIDTDFDGCMKLIREVTSELPIYLANSLNSLRLEGQKTAAVEILQQFDWEVPDWVIVPGGNLGNIYAFYKGFKMCHELGLVDRMPRLVCTQAANANPLYLYYKSGWKDFKAVKASTTFASAIQIGDPVSIDRAVYALKNCNGIVEEATEEELMDAMAQADSTGMFICPHTGVALTALIKLRNSGVIGPLDRTVVVSTAHGLKFTQSKIDYHSKEIKDMACRFANPPVQVKADFGAVMDVLKKYLGSKAPI
***************************PTVISCSFSTS*********************IRDEARRQRSTTNNTFSAKYVPFNAGPDSPEFYSLDEIVYRSRSGGLLDVQHDMESLKKFDGAYWRDLFDSRVGKTTWPYGSGVWSKKEWVLPEIDPDDIVSAFEGNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISIAQLVQPIANGAFVLSIDTDFDGCMKLIREVTSELPIYLANSLNSLRLEGQKTAAVEILQQFDWEVPDWVIVPGGNLGNIYAFYKGFKMCHELGLVDRMPRLVCTQAANANPLYLYYKSGWKDFKAVKASTTFASAIQIGDPVSIDRAVYALKNCNGIVEEATEEELMDAMAQADSTGMFICPHTGVALTALIKLRNSGVIGPLDRTVVVSTAHGLKFTQSKIDYHSKEIKDMACRFANPPVQVKADFGAVMDVLKKYLGSKA**
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MASCSLFHPQTKIKPFNQNHPRLTYHPPTVISCSFSTSNPSSPPPPAAASKNRRAADENIRDEARRQRSTTNNTFSAKYVPFNAGPDSPEFYSLDEIVYRSRSGGLLDVQHDMESLKKFDGAYWRDLFDSRVGKTTWPYGSGVWSKKEWVLPEIDPDDIVSAFEGNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISIAQLVQPIANGAFVLSIDTDFDGCMKLIREVTSELPIYLANSLNSLRLEGQKTAAVEILQQFDWEVPDWVIVPGGNLGNIYAFYKGFKMCHELGLVDRMPRLVCTQAANANPLYLYYKSGWKDFKAVKASTTFASAIQIGDPVSIDRAVYALKNCNGIVEEATEEELMDAMAQADSTGMFICPHTGVALTALIKLRNSGVIGPLDRTVVVSTAHGLKFTQSKIDYHSKEIKDMACRFANPPVQVKADFGAVMDVLKKYLGSKAPI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query521 2.2.26 [Sep-21-2011]
Q9S7B5526 Threonine synthase 1, chl yes no 0.988 0.979 0.839 0.0
Q9MT28519 Threonine synthase, chlor N/A no 0.894 0.897 0.903 0.0
Q9SSP5516 Threonine synthase 2, chl no no 0.982 0.992 0.797 0.0
Q58860405 Threonine synthase OS=Met yes no 0.748 0.962 0.383 2e-71
Q8TQD4405 Threonine synthase OS=Met yes no 0.704 0.906 0.393 3e-66
P66902360 Threonine synthase OS=Myc yes no 0.610 0.883 0.383 2e-44
P66903360 Threonine synthase OS=Myc yes no 0.610 0.883 0.383 2e-44
A0R220360 Threonine synthase OS=Myc yes no 0.589 0.852 0.384 5e-44
P45837360 Threonine synthase OS=Myc yes no 0.610 0.883 0.380 8e-44
P74193382 Threonine synthase OS=Syn N/A no 0.642 0.876 0.345 3e-43
>sp|Q9S7B5|THRC1_ARATH Threonine synthase 1, chloroplastic OS=Arabidopsis thaliana GN=TS1 PE=1 SV=1 Back     alignment and function desciption
 Score =  900 bits (2325), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 439/523 (83%), Positives = 462/523 (88%), Gaps = 8/523 (1%)

Query: 1   MASCSLFHPQT-----KIKPFNQNHP-RLTYHPPTVISCSFSTSNPSSPPPPAAASKNRR 54
           MAS  LF+        K  P  ++    L  H P VISC+   +N  +P   A    +R 
Sbjct: 1   MASSCLFNASVSSLNPKQDPIRRHRSTSLLRHRPVVISCTADGNNIKAPIETAVKPPHR- 59

Query: 55  AADENIRDEARRQRSTTNNTFSAKYVPFNAGPDSPEFYSLDEIVYRSRSGGLLDVQHDME 114
             ++NIRDEARR RS   N FSAKYVPFNA P S E YSLDEIVYRSRSGGLLDV+HDME
Sbjct: 60  -TEDNIRDEARRNRSNAVNPFSAKYVPFNAAPGSTESYSLDEIVYRSRSGGLLDVEHDME 118

Query: 115 SLKKFDGAYWRDLFDSRVGKTTWPYGSGVWSKKEWVLPEIDPDDIVSAFEGNSNLFWAER 174
           +LK+FDGAYWRDLFDSRVGK+TWPYGSGVWSKKEWVLPEID DDIVSAFEGNSNLFWAER
Sbjct: 119 ALKRFDGAYWRDLFDSRVGKSTWPYGSGVWSKKEWVLPEIDDDDIVSAFEGNSNLFWAER 178

Query: 175 FGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCASTGDTSAA 234
           FGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCASTGDTSAA
Sbjct: 179 FGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCASTGDTSAA 238

Query: 235 LSAYCASAGIPSIVFLPANKISIAQLVQPIANGAFVLSIDTDFDGCMKLIREVTSELPIY 294
           LSAYCASAGIPSIVFLPANKIS+AQLVQPIANGAFVLSIDTDFDGCMKLIRE+T+ELPIY
Sbjct: 239 LSAYCASAGIPSIVFLPANKISMAQLVQPIANGAFVLSIDTDFDGCMKLIREITAELPIY 298

Query: 295 LANSLNSLRLEGQKTAAVEILQQFDWEVPDWVIVPGGNLGNIYAFYKGFKMCHELGLVDR 354
           LANSLNSLRLEGQKTAA+EILQQFDW+VPDWVIVPGGNLGNIYAFYKGFKMC ELGLVDR
Sbjct: 299 LANSLNSLRLEGQKTAAIEILQQFDWQVPDWVIVPGGNLGNIYAFYKGFKMCQELGLVDR 358

Query: 355 MPRLVCTQAANANPLYLYYKSGWKDFKAVKASTTFASAIQIGDPVSIDRAVYALKNCNGI 414
           +PR+VC QAANANPLYL+YKSGWKDFK + ASTTFASAIQIGDPVSIDRAVYALK CNGI
Sbjct: 359 IPRMVCAQAANANPLYLHYKSGWKDFKPMTASTTFASAIQIGDPVSIDRAVYALKKCNGI 418

Query: 415 VEEATEEELMDAMAQADSTGMFICPHTGVALTALIKLRNSGVIGPLDRTVVVSTAHGLKF 474
           VEEATEEELMDAMAQADSTGMFICPHTGVALTAL KLRN GVI P DRTVVVSTAHGLKF
Sbjct: 419 VEEATEEELMDAMAQADSTGMFICPHTGVALTALFKLRNQGVIAPTDRTVVVSTAHGLKF 478

Query: 475 TQSKIDYHSKEIKDMACRFANPPVQVKADFGAVMDVLKKYLGS 517
           TQSKIDYHS  I DMACRF+NPPV VKADFGAVMDVLK YLGS
Sbjct: 479 TQSKIDYHSNAIPDMACRFSNPPVDVKADFGAVMDVLKSYLGS 521
Catalyzes the gamma-elimination of phosphate from L-phosphohomoserine and the beta-addition of water to produce L-threonine.
Arabidopsis thaliana (taxid: 3702)
EC: 4EC: .EC: 2EC: .EC: 3EC: .EC: 1
>sp|Q9MT28|THRC_SOLTU Threonine synthase, chloroplastic OS=Solanum tuberosum PE=2 SV=1 Back     alignment and function description
>sp|Q9SSP5|THRC2_ARATH Threonine synthase 2, chloroplastic OS=Arabidopsis thaliana GN=TS2 PE=1 SV=1 Back     alignment and function description
>sp|Q58860|THRC_METJA Threonine synthase OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=thrC PE=3 SV=1 Back     alignment and function description
>sp|Q8TQD4|THRC_METAC Threonine synthase OS=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=thrC PE=1 SV=1 Back     alignment and function description
>sp|P66902|THRC_MYCTU Threonine synthase OS=Mycobacterium tuberculosis GN=thrC PE=1 SV=1 Back     alignment and function description
>sp|P66903|THRC_MYCBO Threonine synthase OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) GN=thrC PE=3 SV=1 Back     alignment and function description
>sp|A0R220|THRC_MYCS2 Threonine synthase OS=Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155) GN=thrC PE=1 SV=1 Back     alignment and function description
>sp|P45837|THRC_MYCLE Threonine synthase OS=Mycobacterium leprae (strain TN) GN=thrC PE=3 SV=1 Back     alignment and function description
>sp|P74193|THRC_SYNY3 Threonine synthase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=thrC PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query521
255546057539 threonine synthase, putative [Ricinus co 0.980 0.948 0.876 0.0
449452536532 PREDICTED: threonine synthase, chloropla 0.996 0.975 0.850 0.0
297799002526 methionine over-accumulator [Arabidopsis 0.988 0.979 0.837 0.0
15233723526 threonine synthase 1 [Arabidopsis thalia 0.988 0.979 0.839 0.0
1448917525 threonine synthase, partial [Arabidopsis 0.982 0.975 0.847 0.0
225444828522 PREDICTED: threonine synthase, chloropla 0.973 0.971 0.831 0.0
430736179537 threonine synthase [Lens culinaris] 0.900 0.873 0.897 0.0
20140867519 RecName: Full=Threonine synthase, chloro 0.894 0.897 0.903 0.0
83754491486 Chain A, Crystallographic Structure Of A 0.907 0.973 0.894 0.0
357454545532 Threonine synthase [Medicago truncatula] 0.896 0.877 0.899 0.0
>gi|255546057|ref|XP_002514088.1| threonine synthase, putative [Ricinus communis] gi|223546544|gb|EEF48042.1| threonine synthase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  939 bits (2428), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 454/518 (87%), Positives = 478/518 (92%), Gaps = 7/518 (1%)

Query: 7   FHPQTKIKPFNQNHPRLTYHPPTVISCSFSTSNPS--SPPPPAAASKNRRAADENIRDEA 64
           FH  +K+        R    P   ISC+ ST +PS  S   P   +K+RR A+ENIRDEA
Sbjct: 24  FHRNSKLSSTTTTTTRRIVTP---ISCTSSTLDPSASSNNTPPVTTKHRRPAEENIRDEA 80

Query: 65  RRQRSTTN--NTFSAKYVPFNAGPDSPEFYSLDEIVYRSRSGGLLDVQHDMESLKKFDGA 122
           RR RS+++  NTFSAKY+PFNA PDS E+YSLDEIVYRSRSGGLLDVQHDME+LKKFDG 
Sbjct: 81  RRHRSSSSAVNTFSAKYIPFNAPPDSREYYSLDEIVYRSRSGGLLDVQHDMEALKKFDGG 140

Query: 123 YWRDLFDSRVGKTTWPYGSGVWSKKEWVLPEIDPDDIVSAFEGNSNLFWAERFGKQFLGM 182
           YWRDLFDSRVGKTTWPYGSGVWSKKEWVLPEIDPDDIVSAFEGNSNLFWAERFGKQFLGM
Sbjct: 141 YWRDLFDSRVGKTTWPYGSGVWSKKEWVLPEIDPDDIVSAFEGNSNLFWAERFGKQFLGM 200

Query: 183 NDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCASTGDTSAALSAYCASA 242
           NDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMK+PVVGVGCASTGDTSAALSAYCASA
Sbjct: 201 NDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKKPVVGVGCASTGDTSAALSAYCASA 260

Query: 243 GIPSIVFLPANKISIAQLVQPIANGAFVLSIDTDFDGCMKLIREVTSELPIYLANSLNSL 302
           GIPSIVFLPANKISIAQLVQPIANGAFVLSIDTDFDGCMKLIREVT+ELPIYLANSLNSL
Sbjct: 261 GIPSIVFLPANKISIAQLVQPIANGAFVLSIDTDFDGCMKLIREVTAELPIYLANSLNSL 320

Query: 303 RLEGQKTAAVEILQQFDWEVPDWVIVPGGNLGNIYAFYKGFKMCHELGLVDRMPRLVCTQ 362
           RLEGQKTAA+EILQQFDWEVPDWVIVPGGNLGNIYAFYKGFKMCHELGLVDR+PRLVC Q
Sbjct: 321 RLEGQKTAAIEILQQFDWEVPDWVIVPGGNLGNIYAFYKGFKMCHELGLVDRIPRLVCAQ 380

Query: 363 AANANPLYLYYKSGWKDFKAVKASTTFASAIQIGDPVSIDRAVYALKNCNGIVEEATEEE 422
           AANANPLYLYYKSGWKDFK VKA++TFASAIQIGDPVSIDRAVYALK CNGIVEEATEEE
Sbjct: 381 AANANPLYLYYKSGWKDFKPVKANSTFASAIQIGDPVSIDRAVYALKKCNGIVEEATEEE 440

Query: 423 LMDAMAQADSTGMFICPHTGVALTALIKLRNSGVIGPLDRTVVVSTAHGLKFTQSKIDYH 482
           LMDAMAQADSTGMFICPHTGVALTALIKLRNSG+IGP+DRTVVVSTAHGLKFTQSKIDYH
Sbjct: 441 LMDAMAQADSTGMFICPHTGVALTALIKLRNSGIIGPMDRTVVVSTAHGLKFTQSKIDYH 500

Query: 483 SKEIKDMACRFANPPVQVKADFGAVMDVLKKYLGSKAP 520
           SK I DMAC++ANPPVQVKADFGAVMDVLK YLG+KAP
Sbjct: 501 SKAIPDMACKYANPPVQVKADFGAVMDVLKTYLGNKAP 538

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449452536|ref|XP_004144015.1| PREDICTED: threonine synthase, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297799002|ref|XP_002867385.1| methionine over-accumulator [Arabidopsis lyrata subsp. lyrata] gi|297313221|gb|EFH43644.1| methionine over-accumulator [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15233723|ref|NP_194713.1| threonine synthase 1 [Arabidopsis thaliana] gi|20140904|sp|Q9S7B5.1|THRC1_ARATH RecName: Full=Threonine synthase 1, chloroplastic; AltName: Full=Protein METHIONINE OVER-ACCUMULATOR 2; Flags: Precursor gi|4850369|dbj|BAA77707.1| threonine synthase [Arabidopsis thaliana] gi|4914408|emb|CAB43659.1| threonine synthase [Arabidopsis thaliana] gi|7269883|emb|CAB79742.1| threonine synthase [Arabidopsis thaliana] gi|332660284|gb|AEE85684.1| threonine synthase 1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|1448917|gb|AAB04607.1| threonine synthase, partial [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|225444828|ref|XP_002279042.1| PREDICTED: threonine synthase, chloroplastic [Vitis vinifera] Back     alignment and taxonomy information
>gi|430736179|gb|AGA60119.1| threonine synthase [Lens culinaris] Back     alignment and taxonomy information
>gi|20140867|sp|Q9MT28.1|THRC_SOLTU RecName: Full=Threonine synthase, chloroplastic; Short=TS; Flags: Precursor gi|8439547|gb|AAF74984.1|AF082894_1 threonine synthase [Solanum tuberosum] Back     alignment and taxonomy information
>gi|83754491|pdb|2C2B|A Chain A, Crystallographic Structure Of Arabidopsis Thaliana Threonine Synthase Complexed With Pyridoxal Phosphate And S-Adenosylmethionine gi|83754492|pdb|2C2B|B Chain B, Crystallographic Structure Of Arabidopsis Thaliana Threonine Synthase Complexed With Pyridoxal Phosphate And S-Adenosylmethionine gi|83754493|pdb|2C2B|C Chain C, Crystallographic Structure Of Arabidopsis Thaliana Threonine Synthase Complexed With Pyridoxal Phosphate And S-Adenosylmethionine gi|83754494|pdb|2C2B|D Chain D, Crystallographic Structure Of Arabidopsis Thaliana Threonine Synthase Complexed With Pyridoxal Phosphate And S-Adenosylmethionine gi|83754495|pdb|2C2B|E Chain E, Crystallographic Structure Of Arabidopsis Thaliana Threonine Synthase Complexed With Pyridoxal Phosphate And S-Adenosylmethionine gi|83754496|pdb|2C2B|F Chain F, Crystallographic Structure Of Arabidopsis Thaliana Threonine Synthase Complexed With Pyridoxal Phosphate And S-Adenosylmethionine gi|83754503|pdb|2C2G|A Chain A, Crystal Structure Of Threonine Synthase From Arabidopsis Thaliana In Complex With Its Cofactor Pyridoxal Phosphate gi|83754504|pdb|2C2G|B Chain B, Crystal Structure Of Threonine Synthase From Arabidopsis Thaliana In Complex With Its Cofactor Pyridoxal Phosphate Back     alignment and taxonomy information
>gi|357454545|ref|XP_003597553.1| Threonine synthase [Medicago truncatula] gi|355486601|gb|AES67804.1| Threonine synthase [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query521
TAIR|locus:2123939526 MTO2 "METHIONINE OVER-ACCUMULA 0.982 0.973 0.839 3.2e-232
TAIR|locus:2032632516 AT1G72810 [Arabidopsis thalian 0.982 0.992 0.785 4.2e-214
UNIPROTKB|P66902360 thrC "Threonine synthase" [Myc 0.610 0.883 0.386 5.4e-47
TIGR_CMR|CHY_1911349 CHY_1911 "threonine synthase" 0.589 0.879 0.358 4.4e-45
TIGR_CMR|DET_1205348 DET_1205 "threonine synthase" 0.591 0.885 0.352 5e-44
TIGR_CMR|BA_1969352 BA_1969 "threonine synthase" [ 0.610 0.903 0.358 1.7e-41
UNIPROTKB|P00934428 thrC "threonine synthase" [Esc 0.573 0.698 0.274 1.1e-12
TIGR_CMR|CPS_4289434 CPS_4289 "threonine synthase" 0.573 0.688 0.271 8.9e-12
TIGR_CMR|SO_3413427 SO_3413 "threonine synthase" [ 0.533 0.651 0.278 3.1e-09
UNIPROTKB|Q9KPK5426 VC_2362 "Threonine synthase" [ 0.504 0.617 0.269 5.2e-09
TAIR|locus:2123939 MTO2 "METHIONINE OVER-ACCUMULATOR 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2240 (793.6 bits), Expect = 3.2e-232, P = 3.2e-232
 Identities = 434/517 (83%), Positives = 454/517 (87%)

Query:     2 ASCSLFHPQTKIKPFNQNHPR-LTYHPPTVISCSFXXXXXXXXXXXXXXXXXXXXXDENI 60
             AS S  +P  K  P  ++    L  H P VISC+                      ++NI
Sbjct:     9 ASVSSLNP--KQDPIRRHRSTSLLRHRPVVISCT--ADGNNIKAPIETAVKPPHRTEDNI 64

Query:    61 RDEARRQRSTTNNTFSAKYVPFNAGPDSPEFYSLDEIVYRSRSGGLLDVQHDMESLKKFD 120
             RDEARR RS   N FSAKYVPFNA P S E YSLDEIVYRSRSGGLLDV+HDME+LK+FD
Sbjct:    65 RDEARRNRSNAVNPFSAKYVPFNAAPGSTESYSLDEIVYRSRSGGLLDVEHDMEALKRFD 124

Query:   121 GAYWRDLFDSRVGKTTWPYGSGVWSKKEWVLPEIDPDDIVSAFEGNSNLFWAERFGKQFL 180
             GAYWRDLFDSRVGK+TWPYGSGVWSKKEWVLPEID DDIVSAFEGNSNLFWAERFGKQFL
Sbjct:   125 GAYWRDLFDSRVGKSTWPYGSGVWSKKEWVLPEIDDDDIVSAFEGNSNLFWAERFGKQFL 184

Query:   181 GMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCASTGDTSAALSAYCA 240
             GMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCASTGDTSAALSAYCA
Sbjct:   185 GMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCASTGDTSAALSAYCA 244

Query:   241 SAGIPSIVFLPANKISIAQLVQPIANGAFVLSIDTDFDGCMKLIREVTSELPIYLANSLN 300
             SAGIPSIVFLPANKIS+AQLVQPIANGAFVLSIDTDFDGCMKLIRE+T+ELPIYLANSLN
Sbjct:   245 SAGIPSIVFLPANKISMAQLVQPIANGAFVLSIDTDFDGCMKLIREITAELPIYLANSLN 304

Query:   301 SLRLEGQKTAAVEILQQFDWEVPDWVIVPGGNLGNIYAFYKGFKMCHELGLVDRMPRLVC 360
             SLRLEGQKTAA+EILQQFDW+VPDWVIVPGGNLGNIYAFYKGFKMC ELGLVDR+PR+VC
Sbjct:   305 SLRLEGQKTAAIEILQQFDWQVPDWVIVPGGNLGNIYAFYKGFKMCQELGLVDRIPRMVC 364

Query:   361 TQAANANPLYLYYKSGWKDFKAVKASTTFASAIQIGDPVSIDRAVYALKNCNGIVEEATE 420
              QAANANPLYL+YKSGWKDFK + ASTTFASAIQIGDPVSIDRAVYALK CNGIVEEATE
Sbjct:   365 AQAANANPLYLHYKSGWKDFKPMTASTTFASAIQIGDPVSIDRAVYALKKCNGIVEEATE 424

Query:   421 EELMDAMAQADSTGMFICPHTGVALTALIKLRNSGVIGPLDRTVVVSTAHGLKFTQSKID 480
             EELMDAMAQADSTGMFICPHTGVALTAL KLRN GVI P DRTVVVSTAHGLKFTQSKID
Sbjct:   425 EELMDAMAQADSTGMFICPHTGVALTALFKLRNQGVIAPTDRTVVVSTAHGLKFTQSKID 484

Query:   481 YHSKEIKDMACRFANPPVQVKADFGAVMDVLKKYLGS 517
             YHS  I DMACRF+NPPV VKADFGAVMDVLK YLGS
Sbjct:   485 YHSNAIPDMACRFSNPPVDVKADFGAVMDVLKSYLGS 521
GO:0003824 "catalytic activity" evidence=IEA
GO:0004795 "threonine synthase activity" evidence=IEA;IDA
GO:0006520 "cellular amino acid metabolic process" evidence=IEA
GO:0008152 "metabolic process" evidence=IEA
GO:0009088 "threonine biosynthetic process" evidence=IEA;ISS
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0030170 "pyridoxal phosphate binding" evidence=IEA
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0005829 "cytosol" evidence=IDA
TAIR|locus:2032632 AT1G72810 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|P66902 thrC "Threonine synthase" [Mycobacterium tuberculosis (taxid:1773)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_1911 CHY_1911 "threonine synthase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|DET_1205 DET_1205 "threonine synthase" [Dehalococcoides ethenogenes 195 (taxid:243164)] Back     alignment and assigned GO terms
TIGR_CMR|BA_1969 BA_1969 "threonine synthase" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
UNIPROTKB|P00934 thrC "threonine synthase" [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
TIGR_CMR|CPS_4289 CPS_4289 "threonine synthase" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
TIGR_CMR|SO_3413 SO_3413 "threonine synthase" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KPK5 VC_2362 "Threonine synthase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9SSP5THRC2_ARATH4, ., 2, ., 3, ., 10.79720.98270.9922nono
Q9MT28THRC_SOLTU4, ., 2, ., 3, ., 10.90380.89440.8978N/Ano
Q9S7B5THRC1_ARATH4, ., 2, ., 3, ., 10.83930.98840.9790yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer4.2.30.998
3rd Layer4.2.3.10.994

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query521
PLN02569484 PLN02569, PLN02569, threonine synthase 0.0
cd01563324 cd01563, Thr-synth_1, Threonine synthase is a pyri 1e-157
PRK06260397 PRK06260, PRK06260, threonine synthase; Validated 1e-114
COG0498411 COG0498, ThrC, Threonine synthase [Amino acid tran 2e-94
TIGR00260328 TIGR00260, thrC, threonine synthase 8e-80
PRK07409353 PRK07409, PRK07409, threonine synthase; Validated 1e-78
cd00640244 cd00640, Trp-synth-beta_II, Tryptophan synthase be 1e-55
PRK08197394 PRK08197, PRK08197, threonine synthase; Validated 9e-55
pfam00291295 pfam00291, PALP, Pyridoxal-phosphate dependent enz 1e-52
PRK06352351 PRK06352, PRK06352, threonine synthase; Validated 3e-52
PRK06721352 PRK06721, PRK06721, threonine synthase; Reviewed 3e-49
PRK05638442 PRK05638, PRK05638, threonine synthase; Validated 2e-44
PRK07591421 PRK07591, PRK07591, threonine synthase; Validated 2e-40
PRK08329347 PRK08329, PRK08329, threonine synthase; Validated 1e-27
PRK06450338 PRK06450, PRK06450, threonine synthase; Validated 4e-23
PRK09225462 PRK09225, PRK09225, threonine synthase; Validated 3e-22
cd01560460 cd01560, Thr-synth_2, Threonine synthase catalyzes 4e-22
PRK06381319 PRK06381, PRK06381, threonine synthase; Validated 9e-19
COG1171347 COG1171, IlvA, Threonine dehydratase [Amino acid t 9e-17
cd01562304 cd01562, Thr-dehyd, Threonine dehydratase: The fir 3e-13
TIGR03844398 TIGR03844, cysteate_syn, cysteate synthase 2e-12
TIGR02079409 TIGR02079, THD1, threonine dehydratase 2e-06
PRK08246310 PRK08246, PRK08246, threonine dehydratase; Provisi 7e-06
PRK06815317 PRK06815, PRK06815, hypothetical protein; Provisio 1e-05
PRK08639420 PRK08639, PRK08639, threonine dehydratase; Validat 6e-04
cd01561291 cd01561, CBS_like, CBS_like: This subgroup include 7e-04
PRK08813349 PRK08813, PRK08813, threonine dehydratase; Provisi 0.001
PRK07476322 PRK07476, eutB, threonine dehydratase; Provisional 0.004
>gnl|CDD|178182 PLN02569, PLN02569, threonine synthase Back     alignment and domain information 
 Score =  967 bits (2501), Expect = 0.0
 Identities = 406/482 (84%), Positives = 430/482 (89%)

Query: 36  STSNPSSPPPPAAASKNRRAADENIRDEARRQRSTTNNTFSAKYVPFNAGPDSPEFYSLD 95
           S +      PP   S  +  ADENIRDEARR      + FSAKYVPF   P + E YSLD
Sbjct: 3   SVTRAVISDPPPIKSATKFTADENIRDEARRGPPAPPDEFSAKYVPFLECPLTGEKYSLD 62

Query: 96  EIVYRSRSGGLLDVQHDMESLKKFDGAYWRDLFDSRVGKTTWPYGSGVWSKKEWVLPEID 155
           E+VYRS+SGGLLDV+HDME+LK++DG YWR LFDSRVGKTTWPYGSGVWSKKEWVLPEID
Sbjct: 63  EVVYRSKSGGLLDVRHDMEALKRYDGKYWRALFDSRVGKTTWPYGSGVWSKKEWVLPEID 122

Query: 156 PDDIVSAFEGNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRK 215
            DDIVS FEGNSNLFWAER GK+FLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRK
Sbjct: 123 DDDIVSLFEGNSNLFWAERLGKEFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRK 182

Query: 216 MKRPVVGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISIAQLVQPIANGAFVLSIDT 275
           M +PVVGVGCASTGDTSAALSAYCA+AGIPSIVFLPA+KISIAQLVQPIANGA VLSIDT
Sbjct: 183 MAKPVVGVGCASTGDTSAALSAYCAAAGIPSIVFLPADKISIAQLVQPIANGALVLSIDT 242

Query: 276 DFDGCMKLIREVTSELPIYLANSLNSLRLEGQKTAAVEILQQFDWEVPDWVIVPGGNLGN 335
           DFDGCM+LIREVT+ELPIYLANSLNSLRLEGQKTAA+EILQQFDWEVPDWVIVPGGNLGN
Sbjct: 243 DFDGCMRLIREVTAELPIYLANSLNSLRLEGQKTAAIEILQQFDWEVPDWVIVPGGNLGN 302

Query: 336 IYAFYKGFKMCHELGLVDRMPRLVCTQAANANPLYLYYKSGWKDFKAVKASTTFASAIQI 395
           IYAFYKGFKMC ELGLVDR+PRLVC QAANANPLY  YKSGW++FK VKA+ TFASAIQI
Sbjct: 303 IYAFYKGFKMCKELGLVDRLPRLVCAQAANANPLYRAYKSGWEEFKPVKANPTFASAIQI 362

Query: 396 GDPVSIDRAVYALKNCNGIVEEATEEELMDAMAQADSTGMFICPHTGVALTALIKLRNSG 455
           GDPVSIDRAVYALK  NGIVEEATEEELMDA A+AD TGMF+CPHTGVAL AL KLR SG
Sbjct: 363 GDPVSIDRAVYALKESNGIVEEATEEELMDAQAEADKTGMFLCPHTGVALAALKKLRASG 422

Query: 456 VIGPLDRTVVVSTAHGLKFTQSKIDYHSKEIKDMACRFANPPVQVKADFGAVMDVLKKYL 515
           VIGP DRTVVVSTAHGLKFTQSKIDYHSKEI DMACRFANPPV VKADFG+VMDVLKKYL
Sbjct: 423 VIGPTDRTVVVSTAHGLKFTQSKIDYHSKEIPDMACRFANPPVSVKADFGSVMDVLKKYL 482

Query: 516 GS 517
             
Sbjct: 483 SL 484

Length = 484
>gnl|CDD|107206 cd01563, Thr-synth_1, Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate Back     alignment and domain information
>gnl|CDD|235757 PRK06260, PRK06260, threonine synthase; Validated Back     alignment and domain information
>gnl|CDD|223572 COG0498, ThrC, Threonine synthase [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|232896 TIGR00260, thrC, threonine synthase Back     alignment and domain information
>gnl|CDD|236013 PRK07409, PRK07409, threonine synthase; Validated Back     alignment and domain information
>gnl|CDD|107202 cd00640, Trp-synth-beta_II, Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions Back     alignment and domain information
>gnl|CDD|181283 PRK08197, PRK08197, threonine synthase; Validated Back     alignment and domain information
>gnl|CDD|215840 pfam00291, PALP, Pyridoxal-phosphate dependent enzyme Back     alignment and domain information
>gnl|CDD|180539 PRK06352, PRK06352, threonine synthase; Validated Back     alignment and domain information
>gnl|CDD|136018 PRK06721, PRK06721, threonine synthase; Reviewed Back     alignment and domain information
>gnl|CDD|235539 PRK05638, PRK05638, threonine synthase; Validated Back     alignment and domain information
>gnl|CDD|236065 PRK07591, PRK07591, threonine synthase; Validated Back     alignment and domain information
>gnl|CDD|236244 PRK08329, PRK08329, threonine synthase; Validated Back     alignment and domain information
>gnl|CDD|180565 PRK06450, PRK06450, threonine synthase; Validated Back     alignment and domain information
>gnl|CDD|236418 PRK09225, PRK09225, threonine synthase; Validated Back     alignment and domain information
>gnl|CDD|107203 cd01560, Thr-synth_2, Threonine synthase catalyzes the final step of threonine biosynthesis Back     alignment and domain information
>gnl|CDD|235789 PRK06381, PRK06381, threonine synthase; Validated Back     alignment and domain information
>gnl|CDD|224092 COG1171, IlvA, Threonine dehydratase [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|107205 cd01562, Thr-dehyd, Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen Back     alignment and domain information
>gnl|CDD|163556 TIGR03844, cysteate_syn, cysteate synthase Back     alignment and domain information
>gnl|CDD|233712 TIGR02079, THD1, threonine dehydratase Back     alignment and domain information
>gnl|CDD|181319 PRK08246, PRK08246, threonine dehydratase; Provisional Back     alignment and domain information
>gnl|CDD|180709 PRK06815, PRK06815, hypothetical protein; Provisional Back     alignment and domain information
>gnl|CDD|236318 PRK08639, PRK08639, threonine dehydratase; Validated Back     alignment and domain information
>gnl|CDD|107204 cd01561, CBS_like, CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase Back     alignment and domain information
>gnl|CDD|236339 PRK08813, PRK08813, threonine dehydratase; Provisional Back     alignment and domain information
>gnl|CDD|236025 PRK07476, eutB, threonine dehydratase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 521
PLN02569484 threonine synthase 100.0
PRK07591421 threonine synthase; Validated 100.0
PRK06260397 threonine synthase; Validated 100.0
COG0498411 ThrC Threonine synthase [Amino acid transport and 100.0
PRK08197394 threonine synthase; Validated 100.0
PRK08329347 threonine synthase; Validated 100.0
PRK05638442 threonine synthase; Validated 100.0
PRK06450338 threonine synthase; Validated 100.0
TIGR03844398 cysteate_syn cysteate synthase. Members of this fa 100.0
PRK09225462 threonine synthase; Validated 100.0
cd01560460 Thr-synth_2 Threonine synthase catalyzes the final 100.0
TIGR00260328 thrC threonine synthase. Involved in threonine bio 100.0
PRK07409353 threonine synthase; Validated 100.0
PRK06352351 threonine synthase; Validated 100.0
PRK06721352 threonine synthase; Reviewed 100.0
cd01563324 Thr-synth_1 Threonine synthase is a pyridoxal phos 100.0
PRK02991441 D-serine dehydratase; Provisional 100.0
PRK06381319 threonine synthase; Validated 100.0
cd06448316 L-Ser-dehyd Serine dehydratase is a pyridoxal phos 100.0
PRK06110322 hypothetical protein; Provisional 100.0
TIGR02991317 ectoine_eutB ectoine utilization protein EutB. Mem 100.0
PRK08206399 diaminopropionate ammonia-lyase; Provisional 100.0
PLN02970328 serine racemase 100.0
PRK12483 521 threonine dehydratase; Reviewed 100.0
PRK08638333 threonine dehydratase; Validated 100.0
PRK08526403 threonine dehydratase; Provisional 100.0
PLN02550 591 threonine dehydratase 100.0
PRK07476322 eutB threonine dehydratase; Provisional 100.0
PRK06382406 threonine dehydratase; Provisional 100.0
PRK07048321 serine/threonine dehydratase; Validated 100.0
TIGR01747376 diampropi_NH3ly diaminopropionate ammonia-lyase fa 100.0
PRK08813349 threonine dehydratase; Provisional 100.0
PLN02565322 cysteine synthase 100.0
PRK06815317 hypothetical protein; Provisional 100.0
TIGR01124 499 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, 100.0
COG1171347 IlvA Threonine dehydratase [Amino acid transport a 100.0
cd01562304 Thr-dehyd Threonine dehydratase: The first step in 100.0
TIGR02079409 THD1 threonine dehydratase. This model represents 100.0
PRK08198404 threonine dehydratase; Provisional 100.0
cd06447404 D-Ser-dehyd D-Serine dehydratase is a pyridoxal ph 100.0
TIGR01127380 ilvA_1Cterm threonine dehydratase, medium form. A 100.0
PRK09224 504 threonine dehydratase; Reviewed 100.0
PRK08246310 threonine dehydratase; Provisional 100.0
PRK10717330 cysteine synthase A; Provisional 100.0
TIGR02035431 D_Ser_am_lyase D-serine ammonia-lyase. This family 100.0
PRK06608338 threonine dehydratase; Provisional 100.0
PRK08639420 threonine dehydratase; Validated 100.0
PRK07334403 threonine dehydratase; Provisional 100.0
TIGR03528396 2_3_DAP_am_ly diaminopropionate ammonia-lyase. Mem 100.0
cd01561291 CBS_like CBS_like: This subgroup includes Cystathi 100.0
TIGR01136299 cysKM cysteine synthases. This model discriminates 100.0
PLN02356423 phosphateglycerate kinase 100.0
TIGR01415419 trpB_rel pyridoxal-phosphate dependent TrpB-like e 100.0
PRK11761296 cysM cysteine synthase B; Provisional 100.0
TIGR01139298 cysK cysteine synthase A. This model distinguishes 100.0
PLN03013429 cysteine synthase 100.0
PLN02556368 cysteine synthase/L-3-cyanoalanine synthase 100.0
TIGR01138290 cysM cysteine synthase B. Alternate name: O-acetyl 100.0
PLN00011323 cysteine synthase 100.0
cd00640244 Trp-synth-beta_II Tryptophan synthase beta superfa 100.0
PF00291306 PALP: Pyridoxal-phosphate dependent enzyme; InterP 100.0
cd06446365 Trp-synth_B Tryptophan synthase-beta: Trptophan sy 100.0
TIGR00263385 trpB tryptophan synthase, beta subunit. Tryptophan 100.0
PLN02618410 tryptophan synthase, beta chain 100.0
PRK12391427 tryptophan synthase subunit beta; Reviewed 100.0
TIGR01137 454 cysta_beta cystathionine beta-synthase. Members of 100.0
KOG1250457 consensus Threonine/serine dehydratases [Amino aci 100.0
PRK13028402 tryptophan synthase subunit beta; Provisional 100.0
PRK04346397 tryptophan synthase subunit beta; Validated 100.0
COG0031300 CysK Cysteine synthase [Amino acid transport and m 100.0
KOG1251323 consensus Serine racemase [Signal transduction mec 100.0
PRK12390337 1-aminocyclopropane-1-carboxylate deaminase; Provi 100.0
PRK13802695 bifunctional indole-3-glycerol phosphate synthase/ 100.0
PRK03910331 D-cysteine desulfhydrase; Validated 100.0
TIGR01274337 ACC_deam 1-aminocyclopropane-1-carboxylate deamina 100.0
PRK13803610 bifunctional phosphoribosylanthranilate isomerase/ 100.0
TIGR01275311 ACC_deam_rel pyridoxal phosphate-dependent enzymes 100.0
cd06449307 ACCD Aminocyclopropane-1-carboxylate deaminase (AC 100.0
PRK14045329 1-aminocyclopropane-1-carboxylate deaminase; Provi 100.0
KOG1252362 consensus Cystathionine beta-synthase and related 100.0
KOG1481391 consensus Cysteine synthase [Amino acid transport 100.0
COG0133396 TrpB Tryptophan synthase beta chain [Amino acid tr 99.96
KOG1395477 consensus Tryptophan synthase beta chain [Amino ac 99.95
COG1350432 Predicted alternative tryptophan synthase beta-sub 99.92
COG3048443 DsdA D-serine dehydratase [Amino acid transport an 99.89
COG2515323 Acd 1-aminocyclopropane-1-carboxylate deaminase [A 99.86
KOG2616266 consensus Pyridoxalphosphate-dependent enzyme/pred 99.8
PF1482179 Thr_synth_N: Threonine synthase N terminus; PDB: 3 96.59
PRK0039846 rpoP DNA-directed RNA polymerase subunit P; Provis 85.73
TIGR00373158 conserved hypothetical protein TIGR00373. This fam 85.32
PRK06266178 transcription initiation factor E subunit alpha; V 85.19
PF03808172 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/Cp 81.77
>PLN02569 threonine synthase Back     alignment and domain information 
Probab=100.00  E-value=6.8e-95  Score=777.75  Aligned_cols=473  Identities=86%  Similarity=1.346  Sum_probs=432.1

Q ss_pred             CCCcccccccccCCcchHHHHHhcCCCCCCccceeecCCCCCCCCCCccCCCCceeecCCCCcceeccccchhccCChHH
Q 009957           44 PPPAAASKNRRAADENIRDEARRQRSTTNNTFSAKYVPFNAGPDSPEFYSLDEIVYRSRSGGLLDVQHDMESLKKFDGAY  123 (521)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~cg~~~~~~~~~~~c~cGGll~~~~d~~~~~~~~~~~  123 (521)
                      .||......++..++|||++|+|+.+.+.+.||.+|++++.|..||++|+.++..|+|+|||+|++.||++.++.++...
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~C~~Cg~~y~~~~~~~~C~cgg~l~~~~d~~~~~~~~~~~   90 (484)
T PLN02569         11 DPPPIKSATKFTADENIRDEARRGPPAPPDEFSAKYVPFLECPLTGEKYSLDEVVYRSKSGGLLDVRHDMEALKRYDGKY   90 (484)
T ss_pred             CCCCcccccccCcchhhhhhhhhcCCCCCcccccccccccEeCCCCCcCCCccccccCCCCCeEEEecchhhhccccchh
Confidence            34444556678889999999999888888999999999999999999999999999999999999999998776555455


Q ss_pred             HHHhhhhccCCCCCCCCCccccccccccCCCCcchhhcccccCCccccccccccccCCCCcEEEecCCCCCCCChhHHHH
Q 009957          124 WRDLFDSRVGKTTWPYGSGVWSKKEWVLPEIDPDDIVSAFEGNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGM  203 (521)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~iwr~~~~~lP~~~~~~~vsl~eG~TPL~~~~~l~~~~lg~~~l~vK~E~~nPTGSfKDRga  203 (521)
                      |++.++.+.....||+.++||||++|+||..+.+.+++|+||+|||++++++++..+|+.+||+|+|++||||||||||+
T Consensus        91 ~~~~~~~~~~~~~~~~~~g~wry~~~~lP~~~~~~~vsl~eG~TPLv~~~~l~~~~~G~~~l~~K~E~~nPTGSFKDRga  170 (484)
T PLN02569         91 WRALFDSRVGKTTWPYGSGVWSKKEWVLPEIDDDDIVSLFEGNSNLFWAERLGKEFLGMNDLWVKHCGISHTGSFKDLGM  170 (484)
T ss_pred             hhhhHhcccccccCCCCCCccccccccCCCCCcccceecCCCCCceeEhhhhhHhhcCCccEEEEECCCCCCcCHHHHHH
Confidence            66666666555668888899999998899877778899999999999999987642566689999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCceEEEEeCCchHHHHHHHHHHhcCCCEEEEccCCcCCHHhHHhHHhCCCEEEEECCCHHHHHHH
Q 009957          204 TVLVSQVNRLRKMKRPVVGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISIAQLVQPIANGAFVLSIDTDFDGCMKL  283 (521)
Q Consensus       204 ~~~v~~a~~~~~~g~~~~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~~dd~~~~  283 (521)
                      .++++.+.+.+..+.+...|+++||||||+|+|+||+++|++|+||+|++.++..|+.||+.|||+|+.|+|+||+|++.
T Consensus       171 ~~~vs~a~~~g~~~~~~~~Vv~ASSGN~GaAlAayaa~~Gl~~~I~vP~~~~~~~k~~qi~a~GA~Vi~v~g~~d~a~~~  250 (484)
T PLN02569        171 TVLVSQVNRLRKMAKPVVGVGCASTGDTSAALSAYCAAAGIPSIVFLPADKISIAQLVQPIANGALVLSIDTDFDGCMRL  250 (484)
T ss_pred             HHHHHHHHHhhhccCCccEEEEeCCcHHHHHHHHHHHhcCCeEEEEEcCCCCCHHHHHHHHhcCCEEEEECCCHHHHHHH
Confidence            99999987765444334679999999999999999999999999999997678899999999999999999999999999


Q ss_pred             HHHHHhcCCccccCCCChHhHhhHHHHHHHHHHhcCCCCCcEEEEcCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEecc
Q 009957          284 IREVTSELPIYLANSLNSLRLEGQKTAAVEILQQFDWEVPDWVIVPGGNLGNIYAFYKGFKMCHELGLVDRMPRLVCTQA  363 (521)
Q Consensus       284 ~~~~~~~~~~~~~ns~Np~~i~G~~T~a~EI~eQl~~~~pD~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prli~Vq~  363 (521)
                      +++++++.++|++|++||++++||+|+++||++|++|+.||+||+|+|+||+++|+++||++++++|+++++||||+||+
T Consensus       251 a~e~~~~~~~~~~n~~Np~~ieG~kT~a~EI~eQl~~~~pD~VvvPvG~Gg~l~Gi~kgfkel~~~G~i~~~Priv~Vqa  330 (484)
T PLN02569        251 IREVTAELPIYLANSLNSLRLEGQKTAAIEILQQFDWEVPDWVIVPGGNLGNIYAFYKGFKMCKELGLVDRLPRLVCAQA  330 (484)
T ss_pred             HHHHHHHcCCEecCCCCcchhHhHHHHHHHHHHHcCCCCCCEEEEeCCchHHHHHHHHHHHHHHHcCCCCCCCeEEEEee
Confidence            99998888999999999999999999999999999987799999999999999999999999999999999999999999


Q ss_pred             CCCchhhHHHhhCCcceeecccccchhhhhccCCCccHHHHHHHHHhcCCeEEEeCHHHHHHHHHHHHhcCCeeccchHH
Q 009957          364 ANANPLYLYYKSGWKDFKAVKASTTFASAIQIGDPVSIDRAVYALKNCNGIVEEATEEELMDAMAQADSTGMFICPHTGV  443 (521)
Q Consensus       364 ~~~~~l~~~~~~G~~~~~~~~~~~Tia~~i~i~~P~~~~~~l~~l~~~~g~~v~Vsd~Ei~~A~~~l~~eGi~~ePssA~  443 (521)
                      ++|++++++|+.|...+.+....+|++++|+++.|.++.+.+.++++++|.++.|+|+|+++|+++++++|+++||+||+
T Consensus       331 ~g~~pl~~a~~~G~~~~~~~~~~~T~A~gi~i~~P~~~~~~l~al~~s~g~~v~VsDeEi~~a~~~a~~~Gi~vepssAa  410 (484)
T PLN02569        331 ANANPLYRAYKSGWEEFKPVKANPTFASAIQIGDPVSIDRAVYALKESNGIVEEATEEELMDAQAEADKTGMFLCPHTGV  410 (484)
T ss_pred             CCCcHHHHHHHcCCCccccCCCCCccchhhccCCCccHHHHHHHHHHhCCEEEEECHHHHHHHHHHHHHCCcEECchHHH
Confidence            99999999999997555666667899999999999999999999999999999999999999999977899999999999


Q ss_pred             HHHHHHHHHhcCCCCCCCeEEEEeCCCCCCchHHHHhhhcchhHHhhhhhcCCCcccCCCHHHHHHHHHHHhc
Q 009957          444 ALTALIKLRNSGVIGPLDRTVVVSTAHGLKFTQSKIDYHSKEIKDMACRFANPPVQVKADFGAVMDVLKKYLG  516 (521)
Q Consensus       444 alAa~~~l~~~g~i~~~~~vV~v~TG~g~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  516 (521)
                      ++||++++.++|.+.++++||+++||+|+||++..+.||.++++.+.++++|+|..+++|++.|++.|+.+++
T Consensus       411 alAal~kl~~~g~i~~~~~VV~i~Tg~GlK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  483 (484)
T PLN02569        411 ALAALKKLRASGVIGPTDRTVVVSTAHGLKFTQSKIDYHSKEIPDMACRFANPPVSVKADFGSVMDVLKKYLS  483 (484)
T ss_pred             HHHHHHHHHHcCCCCCCCcEEEEeCCCcccChhHHHHhcccccccchhhccCCccccCCCHHHHHHHHHHHhc
Confidence            9999999999998999999999999999999999999999999999999999999999999999999998875

>PRK07591 threonine synthase; Validated Back     alignment and domain information
>PRK06260 threonine synthase; Validated Back     alignment and domain information
>COG0498 ThrC Threonine synthase [Amino acid transport and metabolism] Back     alignment and domain information
>PRK08197 threonine synthase; Validated Back     alignment and domain information
>PRK08329 threonine synthase; Validated Back     alignment and domain information
>PRK05638 threonine synthase; Validated Back     alignment and domain information
>PRK06450 threonine synthase; Validated Back     alignment and domain information
>TIGR03844 cysteate_syn cysteate synthase Back     alignment and domain information
>PRK09225 threonine synthase; Validated Back     alignment and domain information
>cd01560 Thr-synth_2 Threonine synthase catalyzes the final step of threonine biosynthesis Back     alignment and domain information
>TIGR00260 thrC threonine synthase Back     alignment and domain information
>PRK07409 threonine synthase; Validated Back     alignment and domain information
>PRK06352 threonine synthase; Validated Back     alignment and domain information
>PRK06721 threonine synthase; Reviewed Back     alignment and domain information
>cd01563 Thr-synth_1 Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate Back     alignment and domain information
>PRK02991 D-serine dehydratase; Provisional Back     alignment and domain information
>PRK06381 threonine synthase; Validated Back     alignment and domain information
>cd06448 L-Ser-dehyd Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia Back     alignment and domain information
>PRK06110 hypothetical protein; Provisional Back     alignment and domain information
>TIGR02991 ectoine_eutB ectoine utilization protein EutB Back     alignment and domain information
>PRK08206 diaminopropionate ammonia-lyase; Provisional Back     alignment and domain information
>PLN02970 serine racemase Back     alignment and domain information
>PRK12483 threonine dehydratase; Reviewed Back     alignment and domain information
>PRK08638 threonine dehydratase; Validated Back     alignment and domain information
>PRK08526 threonine dehydratase; Provisional Back     alignment and domain information
>PLN02550 threonine dehydratase Back     alignment and domain information
>PRK07476 eutB threonine dehydratase; Provisional Back     alignment and domain information
>PRK06382 threonine dehydratase; Provisional Back     alignment and domain information
>PRK07048 serine/threonine dehydratase; Validated Back     alignment and domain information
>TIGR01747 diampropi_NH3ly diaminopropionate ammonia-lyase family Back     alignment and domain information
>PRK08813 threonine dehydratase; Provisional Back     alignment and domain information
>PLN02565 cysteine synthase Back     alignment and domain information
>PRK06815 hypothetical protein; Provisional Back     alignment and domain information
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form Back     alignment and domain information
>COG1171 IlvA Threonine dehydratase [Amino acid transport and metabolism] Back     alignment and domain information
>cd01562 Thr-dehyd Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen Back     alignment and domain information
>TIGR02079 THD1 threonine dehydratase Back     alignment and domain information
>PRK08198 threonine dehydratase; Provisional Back     alignment and domain information
>cd06447 D-Ser-dehyd D-Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- or D-serine to pyruvate and ammonia Back     alignment and domain information
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form Back     alignment and domain information
>PRK09224 threonine dehydratase; Reviewed Back     alignment and domain information
>PRK08246 threonine dehydratase; Provisional Back     alignment and domain information
>PRK10717 cysteine synthase A; Provisional Back     alignment and domain information
>TIGR02035 D_Ser_am_lyase D-serine ammonia-lyase Back     alignment and domain information
>PRK06608 threonine dehydratase; Provisional Back     alignment and domain information
>PRK08639 threonine dehydratase; Validated Back     alignment and domain information
>PRK07334 threonine dehydratase; Provisional Back     alignment and domain information
>TIGR03528 2_3_DAP_am_ly diaminopropionate ammonia-lyase Back     alignment and domain information
>cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase Back     alignment and domain information
>TIGR01136 cysKM cysteine synthases Back     alignment and domain information
>PLN02356 phosphateglycerate kinase Back     alignment and domain information
>TIGR01415 trpB_rel pyridoxal-phosphate dependent TrpB-like enzyme Back     alignment and domain information
>PRK11761 cysM cysteine synthase B; Provisional Back     alignment and domain information
>TIGR01139 cysK cysteine synthase A Back     alignment and domain information
>PLN03013 cysteine synthase Back     alignment and domain information
>PLN02556 cysteine synthase/L-3-cyanoalanine synthase Back     alignment and domain information
>TIGR01138 cysM cysteine synthase B Back     alignment and domain information
>PLN00011 cysteine synthase Back     alignment and domain information
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions Back     alignment and domain information
>PF00291 PALP: Pyridoxal-phosphate dependent enzyme; InterPro: IPR001926 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) Back     alignment and domain information
>cd06446 Trp-synth_B Tryptophan synthase-beta: Trptophan synthase is a bifunctional enzyme that catalyses the last two steps in the biosynthesis of L-tryptophan via its alpha and beta reactions Back     alignment and domain information
>TIGR00263 trpB tryptophan synthase, beta subunit Back     alignment and domain information
>PLN02618 tryptophan synthase, beta chain Back     alignment and domain information
>PRK12391 tryptophan synthase subunit beta; Reviewed Back     alignment and domain information
>TIGR01137 cysta_beta cystathionine beta-synthase Back     alignment and domain information
>KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism] Back     alignment and domain information
>PRK13028 tryptophan synthase subunit beta; Provisional Back     alignment and domain information
>PRK04346 tryptophan synthase subunit beta; Validated Back     alignment and domain information
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism] Back     alignment and domain information
>KOG1251 consensus Serine racemase [Signal transduction mechanisms; Amino acid transport and metabolism] Back     alignment and domain information
>PRK12390 1-aminocyclopropane-1-carboxylate deaminase; Provisional Back     alignment and domain information
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional Back     alignment and domain information
>PRK03910 D-cysteine desulfhydrase; Validated Back     alignment and domain information
>TIGR01274 ACC_deam 1-aminocyclopropane-1-carboxylate deaminase Back     alignment and domain information
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional Back     alignment and domain information
>TIGR01275 ACC_deam_rel pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family Back     alignment and domain information
>cd06449 ACCD Aminocyclopropane-1-carboxylate deaminase (ACCD): Pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of 1-aminocyclopropane-L-carboxylate (ACC), a precursor of the plant hormone ethylene, to alpha-ketobutyrate and ammonia Back     alignment and domain information
>PRK14045 1-aminocyclopropane-1-carboxylate deaminase; Provisional Back     alignment and domain information
>KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism] Back     alignment and domain information
>KOG1481 consensus Cysteine synthase [Amino acid transport and metabolism] Back     alignment and domain information
>COG0133 TrpB Tryptophan synthase beta chain [Amino acid transport and metabolism] Back     alignment and domain information
>KOG1395 consensus Tryptophan synthase beta chain [Amino acid transport and metabolism] Back     alignment and domain information
>COG1350 Predicted alternative tryptophan synthase beta-subunit (paralog of TrpB) [General function prediction only] Back     alignment and domain information
>COG3048 DsdA D-serine dehydratase [Amino acid transport and metabolism] Back     alignment and domain information
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism] Back     alignment and domain information
>KOG2616 consensus Pyridoxalphosphate-dependent enzyme/predicted threonine synthase [Amino acid transport and metabolism] Back     alignment and domain information
>PF14821 Thr_synth_N: Threonine synthase N terminus; PDB: 3V7N_A 1VB3_A 1KL7_A Back     alignment and domain information
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional Back     alignment and domain information
>TIGR00373 conserved hypothetical protein TIGR00373 Back     alignment and domain information
>PRK06266 transcription initiation factor E subunit alpha; Validated Back     alignment and domain information
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query521
2c2b_A486 Crystallographic Structure Of Arabidopsis Thaliana 0.0
1e5x_A486 Structure Of Threonine Synthase From Arabidopsis Th 0.0
1uim_A351 Crystal Structure Of Threonine Synthase From Thermu 1e-46
2zsj_A352 Crystal Structure Of Threonine Synthase From Aquife 2e-46
2d1f_A360 Structure Of Mycobacterium Tuberculosis Threonine S 1e-45
1vb3_A428 Crystal Structure Of Threonine Synthase From Escher 5e-12
4f4f_A468 X-Ray Crystal Structure Of Plp Bound Threonine Synt 8e-08
>pdb|2C2B|A Chain A, Crystallographic Structure Of Arabidopsis Thaliana Threonine Synthase Complexed With Pyridoxal Phosphate And S-Adenosylmethionine Length = 486 Back     alignment and structure 
Iteration: 1

 Score =  883 bits (2281), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 420/461 (91%), Positives = 436/461 (94%)
Query: 57  DENIRDEARRQRSTTNNTFSAKYVPFNAGPDSPEFYSLDEIVYRSRSGGLLDVQHDMESL 116
           ++NIRDEARR RS   N FSAKYVPFNA P S E YSLDEIVYRSRSGGLLDV+HDME+L
Sbjct: 21  EDNIRDEARRNRSNAVNPFSAKYVPFNAAPGSTESYSLDEIVYRSRSGGLLDVEHDMEAL 80
Query: 117 KKFDGAYWRDLFDSRVGKTTWPYGSGVWSKKEWVLPEIDPDDIVSAFEGNSNLFWAERFG 176
           K+FDGAYWRDLFDSRVGK+TWPYGSGVWSKKEWVLPEID DDIVSAFEGNSNLFWAERFG
Sbjct: 81  KRFDGAYWRDLFDSRVGKSTWPYGSGVWSKKEWVLPEIDDDDIVSAFEGNSNLFWAERFG 140
Query: 177 KQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCASTGDTSAALS 236
           KQFLGMNDLWVKHCGISHTGSF DLGMTVLVSQVNRLRKMKRPVVGVGCASTGDTSAALS
Sbjct: 141 KQFLGMNDLWVKHCGISHTGSFXDLGMTVLVSQVNRLRKMKRPVVGVGCASTGDTSAALS 200
Query: 237 AYCASAGIPSIVFLPANKISIAQLVQPIANGAFVLSIDTDFDGCMKLIREVTSELPIYLA 296
           AYCASAGIPSIVFLPANKIS+AQLVQPIANGAFVLSIDTDFDGCMKLIRE+T+ELPIYLA
Sbjct: 201 AYCASAGIPSIVFLPANKISMAQLVQPIANGAFVLSIDTDFDGCMKLIREITAELPIYLA 260
Query: 297 NSLNSLRLEGQKTAAVEILQQFDWEVPDWVIVPGGNLGNIYAFYKGFKMCHELGLVDRMP 356
           NSLNSLRLEGQKTAA+EILQQFDW+VPDWVIVPGGNLGNIYAFYKGFKMC ELGLVDR+P
Sbjct: 261 NSLNSLRLEGQKTAAIEILQQFDWQVPDWVIVPGGNLGNIYAFYKGFKMCQELGLVDRIP 320
Query: 357 RLVCTQAANANPLYLYYKSGWKDFKAVKASTTFASAIQIGDPVSIDRAVYALKNCNGIVE 416
           R+VC QAANANPLYL+YKSGWKDFK + ASTTFASAIQIGDPVSIDRAVYALK CNGIVE
Sbjct: 321 RMVCAQAANANPLYLHYKSGWKDFKPMTASTTFASAIQIGDPVSIDRAVYALKKCNGIVE 380
Query: 417 EATEEELMDAMAQADSTGMFICPHTGVALTALIKLRNSGVIGPLDRTVVVSTAHGLKFTQ 476
           EATEEELMDAMAQADSTGMFICPHTGVALTAL KLRN GVI P DRTVVVSTAHGLKFTQ
Sbjct: 381 EATEEELMDAMAQADSTGMFICPHTGVALTALFKLRNQGVIAPTDRTVVVSTAHGLKFTQ 440
Query: 477 SKIDYHSKEIKDMACRFANPPVQVKADFGAVMDVLKKYLGS 517
           SKIDYHS  I DMACRF+NPPV VKADFGAVMDVLK YLGS
Sbjct: 441 SKIDYHSNAIPDMACRFSNPPVDVKADFGAVMDVLKSYLGS 481
>pdb|1E5X|A Chain A, Structure Of Threonine Synthase From Arabidopsis Thaliana Length = 486 Back     alignment and structure
>pdb|1UIM|A Chain A, Crystal Structure Of Threonine Synthase From Thermus Thermophilus Hb8, Orthorhombic Crystal Form Length = 351 Back     alignment and structure
>pdb|2ZSJ|A Chain A, Crystal Structure Of Threonine Synthase From Aquifex Aeolicus Vf5 Length = 352 Back     alignment and structure
>pdb|2D1F|A Chain A, Structure Of Mycobacterium Tuberculosis Threonine Synthase Length = 360 Back     alignment and structure
>pdb|1VB3|A Chain A, Crystal Structure Of Threonine Synthase From Escherichia Coli Length = 428 Back     alignment and structure
>pdb|4F4F|A Chain A, X-Ray Crystal Structure Of Plp Bound Threonine Synthase From Brucella Melitensis Length = 468 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query521
1e5x_A486 Threonine synthase; threonine biosynthesis, PLP en 0.0
2zsj_A352 Threonine synthase; PLP dependent enzyme, lyase; H 1e-154
3aey_A351 Threonine synthase; PLP, pyridoxal phosphate, lyas 1e-138
2d1f_A360 Threonine synthase; amino acid synthesis, pyridoxa 1e-137
1vb3_A428 Threonine synthase; PLP-dependent enzyme, lyase; H 3e-30
3v7n_A487 Threonine synthase; ssgcid, structural genomics, s 8e-25
4f4f_A468 Threonine synthase; structural genomics, niaid, na 2e-24
1kl7_A514 Threonine synthase; threonine synthesis, pyridoxal 4e-20
3l6b_A346 Serine racemase; pyridoxal phosphate, PLP, isomera 2e-07
4d9i_A398 Diaminopropionate ammonia-lyase; fold type II PLP- 3e-07
3ss7_X442 D-serine dehydratase; type II fold, ALFA,beta-elim 1e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-05
1v71_A323 Serine racemase, hypothetical protein C320.14 in c 4e-06
1ve5_A311 Threonine deaminase; riken structural genomics/Pro 8e-05
1f2d_A341 1-aminocyclopropane-1-carboxylate deaminase; carbo 7e-04
>1e5x_A Threonine synthase; threonine biosynthesis, PLP enzyme, S-adenosyl-methionine, allostery; 2.25A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 2c2b_A* 2c2g_A* Length = 486 Back     alignment and structure
 Score =  615 bits (1587), Expect = 0.0
 Identities = 423/483 (87%), Positives = 440/483 (91%)

Query: 37  TSNPSSPPPPAAASKNRRAADENIRDEARRQRSTTNNTFSAKYVPFNAGPDSPEFYSLDE 96
               +   P   A K     ++NIRDEARR RS   N FSAKYVPFNA P S E YSLDE
Sbjct: 1   ADGNNIKAPIETAVKPPHRTEDNIRDEARRNRSNAVNPFSAKYVPFNAAPGSTESYSLDE 60

Query: 97  IVYRSRSGGLLDVQHDMESLKKFDGAYWRDLFDSRVGKTTWPYGSGVWSKKEWVLPEIDP 156
           IVYRSRSGGLLDV+HDME+LK+FDGAYWRDLFDSRVGK+TWPYGSGVWSKKEWVLPEID 
Sbjct: 61  IVYRSRSGGLLDVEHDMEALKRFDGAYWRDLFDSRVGKSTWPYGSGVWSKKEWVLPEIDD 120

Query: 157 DDIVSAFEGNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKM 216
           DDIVSAFEGNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKM
Sbjct: 121 DDIVSAFEGNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKM 180

Query: 217 KRPVVGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISIAQLVQPIANGAFVLSIDTD 276
           KRPVVGVGCASTGDTSAALSAYCASAGIPSIVFLPANKIS+AQLVQPIANGAFVLSIDTD
Sbjct: 181 KRPVVGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISMAQLVQPIANGAFVLSIDTD 240

Query: 277 FDGCMKLIREVTSELPIYLANSLNSLRLEGQKTAAVEILQQFDWEVPDWVIVPGGNLGNI 336
           FDGCMKLIRE+T+ELPIYLANSLNSLRLEGQKTAA+EILQQFDW+VPDWVIVPGGNLGNI
Sbjct: 241 FDGCMKLIREITAELPIYLANSLNSLRLEGQKTAAIEILQQFDWQVPDWVIVPGGNLGNI 300

Query: 337 YAFYKGFKMCHELGLVDRMPRLVCTQAANANPLYLYYKSGWKDFKAVKASTTFASAIQIG 396
           YAFYKGFK C ELGLVDR+PR+VC QAANANPLYL+YKSGWKDFK + ASTTFASAIQIG
Sbjct: 301 YAFYKGFKXCQELGLVDRIPRMVCAQAANANPLYLHYKSGWKDFKPMTASTTFASAIQIG 360

Query: 397 DPVSIDRAVYALKNCNGIVEEATEEELMDAMAQADSTGMFICPHTGVALTALIKLRNSGV 456
           DPVSIDRAVYALK CNGIVEEATEEELMDAMAQADSTGMFICPHTGVALTAL KLRN GV
Sbjct: 361 DPVSIDRAVYALKKCNGIVEEATEEELMDAMAQADSTGMFICPHTGVALTALFKLRNQGV 420

Query: 457 IGPLDRTVVVSTAHGLKFTQSKIDYHSKEIKDMACRFANPPVQVKADFGAVMDVLKKYLG 516
           I P DRTVVVSTAHGLKFTQSKIDYHS  I DMACRF+NPPV VKADFGAVMDVLK YLG
Sbjct: 421 IAPTDRTVVVSTAHGLKFTQSKIDYHSNAIPDMACRFSNPPVDVKADFGAVMDVLKSYLG 480

Query: 517 SKA 519
           S  
Sbjct: 481 SNT 483
>2zsj_A Threonine synthase; PLP dependent enzyme, lyase; HET: PLP; 1.80A {Aquifex aeolicus} Length = 352 Back     alignment and structure
>3aey_A Threonine synthase; PLP, pyridoxal phosphate, lyase; 1.92A {Thermus thermophilus} PDB: 1uin_A* 1uim_A* 3aex_A* 1v7c_A Length = 351 Back     alignment and structure
>2d1f_A Threonine synthase; amino acid synthesis, pyridoxal-5'-phosphate, PLP, lyase; HET: PLP; 2.50A {Mycobacterium tuberculosis} Length = 360 Back     alignment and structure
>1vb3_A Threonine synthase; PLP-dependent enzyme, lyase; HET: KPA; 2.20A {Escherichia coli} SCOP: c.79.1.1 Length = 428 Back     alignment and structure
>3v7n_A Threonine synthase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, lyase; 1.40A {Burkholderia thailandensis} Length = 487 Back     alignment and structure
>4f4f_A Threonine synthase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.90A {Brucella melitensis BV} Length = 468 Back     alignment and structure
>1kl7_A Threonine synthase; threonine synthesis, pyridoxal 5-phosphate, beta-family, MON lyase; HET: PLP; 2.70A {Saccharomyces cerevisiae} SCOP: c.79.1.1 Length = 514 Back     alignment and structure
>3l6b_A Serine racemase; pyridoxal phosphate, PLP, isomerase; HET: PLP; 1.50A {Homo sapiens} PDB: 3l6r_A* 3hmk_A* 3l6c_A* Length = 346 Back     alignment and structure
>4d9i_A Diaminopropionate ammonia-lyase; fold type II PLP-dependent enzyme, tryptophan synthase beta like PLP-dependent enzymes superfamily; HET: IT1; 2.00A {Escherichia coli} PDB: 4d9g_A* 4d9n_A* 4d9k_A* 4d9m_A* Length = 398 Back     alignment and structure
>3ss7_X D-serine dehydratase; type II fold, ALFA,beta-elimination, P 5'-phosphate, lyase; HET: PLP; 1.55A {Escherichia coli} PDB: 3ss9_X* 3r0x_A* 3r0z_A Length = 442 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1v71_A Serine racemase, hypothetical protein C320.14 in chromosome III; dimer, PLP, isomerase; HET: PLP; 1.70A {Schizosaccharomyces pombe} SCOP: c.79.1.1 PDB: 1wtc_A* 2zpu_A* 2zr8_A* Length = 323 Back     alignment and structure
>1ve5_A Threonine deaminase; riken structural genomics/Pro initiative, RSGI, structural genomics, lyase; HET: PLP; 2.15A {Thermus thermophilus} SCOP: c.79.1.1 Length = 311 Back     alignment and structure
>1f2d_A 1-aminocyclopropane-1-carboxylate deaminase; carbon-carbon L open twisted alpha/beta, lyase; HET: PLP; 2.00A {Williopsis saturnus} SCOP: c.79.1.1 PDB: 1j0e_A* 1j0d_A* 1j0c_A* Length = 341 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query521
1e5x_A486 Threonine synthase; threonine biosynthesis, PLP en 100.0
1kl7_A514 Threonine synthase; threonine synthesis, pyridoxal 100.0
4f4f_A468 Threonine synthase; structural genomics, niaid, na 100.0
3v7n_A487 Threonine synthase; ssgcid, structural genomics, s 100.0
3aey_A351 Threonine synthase; PLP, pyridoxal phosphate, lyas 100.0
2zsj_A352 Threonine synthase; PLP dependent enzyme, lyase; H 100.0
2d1f_A360 Threonine synthase; amino acid synthesis, pyridoxa 100.0
1vb3_A428 Threonine synthase; PLP-dependent enzyme, lyase; H 100.0
3ss7_X442 D-serine dehydratase; type II fold, ALFA,beta-elim 100.0
1p5j_A372 L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo 100.0
4h27_A364 L-serine dehydratase/L-threonine deaminase; PLP de 100.0
2rkb_A318 Serine dehydratase-like; PLP bound enzyme, enzyme 100.0
3iau_A366 Threonine deaminase; pyridoxal phosphate, amino-ac 100.0
2gn0_A342 Threonine dehydratase catabolic; TDCB, biodegradat 100.0
1ve5_A311 Threonine deaminase; riken structural genomics/Pro 100.0
3l6b_A346 Serine racemase; pyridoxal phosphate, PLP, isomera 100.0
1y7l_A316 O-acetylserine sulfhydrylase, O-acetylserine (thio 100.0
4d9i_A398 Diaminopropionate ammonia-lyase; fold type II PLP- 100.0
1v71_A323 Serine racemase, hypothetical protein C320.14 in c 100.0
1tdj_A 514 Biosynthetic threonine deaminase; allostery, coope 100.0
1ve1_A304 O-acetylserine sulfhydrylase; PLP, transferase, ri 100.0
2q3b_A313 Cysteine synthase A; pyridoxal-5'-phosphate, sulph 100.0
1o58_A303 O-acetylserine sulfhydrylase; TM0665, structural g 100.0
3tbh_A334 O-acetyl serine sulfhydrylase; cysteine synthase, 100.0
2v03_A303 Cysteine synthase B; pyridoxal phosphate, cysteine 100.0
1z7w_A322 Cysteine synthase; transferase; HET: PLP; 2.20A {A 100.0
2egu_A308 Cysteine synthase; O-acetylserine sulfhydrase, str 100.0
2pqm_A343 Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.8 100.0
3dwg_A325 Cysteine synthase B; sulfur carrier protein comple 100.0
4aec_A430 Cysteine synthase, mitochondrial; lyase, cysteine 100.0
3vc3_A344 Beta-cyanoalnine synthase; beta-cyanoalanine synth 100.0
1v8z_A388 Tryptophan synthase beta chain 1; beta+alpha, rike 100.0
1jbq_A435 B, cystathionine beta-synthase, serine sulfhydrase 100.0
1wkv_A389 Cysteine synthase; homodimer, open alpha/beta fold 100.0
1tzj_A338 ACC deaminase, 1-aminocyclopropane-1-carboxylate d 100.0
1x1q_A418 Tryptophan synthase beta chain; structural genomic 100.0
4d9b_A342 D-cysteine desulfhydrase; fold type II PLP-depende 100.0
1f2d_A341 1-aminocyclopropane-1-carboxylate deaminase; carbo 100.0
2o2e_A422 Tryptophan synthase beta chain; amino-acid biosynt 100.0
3pc3_A 527 CG1753, isoform A; CBS, synthase, PLP, heme, amino 100.0
1qop_B396 Tryptophan synthase beta chain; lyase, carbon-oxyg 100.0
1j0a_A325 1-aminocyclopropane-1-carboxylate deaminase; PLP d 100.0
1vp8_A201 Hypothetical protein AF0103; putative pyruvate kin 89.46
>1e5x_A Threonine synthase; threonine biosynthesis, PLP enzyme, S-adenosyl-methionine, allostery; 2.25A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 2c2b_A* 2c2g_A* Back     alignment and structure
Probab=100.00  E-value=5.6e-83  Score=689.79  Aligned_cols=459  Identities=89%  Similarity=1.384  Sum_probs=385.8

Q ss_pred             CcchHHHHHhcCCC--CCCccceeecCCCCCC-CCCCccCCCCceeecCCCCcceeccccchhccCChHHHHHhhhhccC
Q 009957           57 DENIRDEARRQRST--TNNTFSAKYVPFNAGP-DSPEFYSLDEIVYRSRSGGLLDVQHDMESLKKFDGAYWRDLFDSRVG  133 (521)
Q Consensus        57 ~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~-~cg~~~~~~~~~~~c~cGGll~~~~d~~~~~~~~~~~~~~~~~~~~~  133 (521)
                      .+|||+||++..+.  +.....|+|+   +|| +|+++|+|++++++|+|||||++.||++.+|.++.+.|+.++++++.
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~m~c~---~~~~~~~~~~~~~~~~~~~~~ggl~~~~~d~~~~~~~~~~~~~~~~~~~~~   97 (486)
T 1e5x_A           21 EDNIRDEARRNRSNAVNPFSAKYVPF---NAAPGSTESYSLDEIVYRSRSGGLLDVEHDMEALKRFDGAYWRDLFDSRVG   97 (486)
T ss_dssp             HHHHCCC------CCCCCCCEEEEES---SCSSCCCBCTTSCCCBCC----CBEEEEECHHHHHTSCHHHHHHHHHTTTT
T ss_pred             CccHHHHhhhccccccccCCceEEec---cCCCCCCcccChHHheecCCCCCEEEEEecccccCcCCHHHHHHHHHhhhh
Confidence            38999999885554  3344689999   774 78999999999999999999999999999999999889888877776


Q ss_pred             CCCCCCCCccccccccccCCCCcchhhcccccCCccccccccccccCCCCcEEEecCCCCCCCChhHHHHHHHHHHHHHH
Q 009957          134 KTTWPYGSGVWSKKEWVLPEIDPDDIVSAFEGNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRL  213 (521)
Q Consensus       134 ~~~~~~~~~iwr~~~~~lP~~~~~~~vsl~eG~TPL~~~~~l~~~~lg~~~l~vK~E~~nPTGSfKDRga~~~v~~a~~~  213 (521)
                      ...++|..+||||++++.|.++.+.++++++|.|||++++++++..+|..+||+|+|++||||||||||++++++.+.++
T Consensus        98 ~~~~~~~~~i~~y~e~l~p~~~~~~iv~l~~g~TPLv~l~~L~~~~lg~~~l~~K~E~~nPTGSFKDRga~~~~~~l~~~  177 (486)
T 1e5x_A           98 KSTWPYGSGVWSKKEWVLPEIDDDDIVSAFEGNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRL  177 (486)
T ss_dssp             CCCTTTTSTTGGGGGGTCTTCCGGGCCCCCCCCCCEEECHHHHHHHHCCSSEEEEETTSSTTSBTTHHHHHHHHHHHHHH
T ss_pred             hhcccccccceeHHhhcCCcccccccccccCCCCCcEECcccchhhcCCCcEEEeeccCCCccCHHHHHHHHHHHHHHHH
Confidence            67778888999999964488776788999999999999998865313545899999999999999999999999988776


Q ss_pred             HhcCCCceEEEEeCCchHHHHHHHHHHhcCCCEEEEccCCcCCHHhHHhHHhCCCEEEEECCCHHHHHHHHHHHHhcCCc
Q 009957          214 RKMKRPVVGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISIAQLVQPIANGAFVLSIDTDFDGCMKLIREVTSELPI  293 (521)
Q Consensus       214 ~~~g~~~~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~~dd~~~~~~~~~~~~~~  293 (521)
                      .+.+++..+|+++||||||+|+|++|++.|++|+|++|+++++..|+.||+.+||+|+.++|+||+|++.+++++++.++
T Consensus       178 ~~~~~g~~~Vv~aSsGNtG~AlA~~a~~~Gi~~~I~~P~~~~s~~k~~~~~~~GA~vi~v~g~~dd~~~~a~~l~~~~~~  257 (486)
T 1e5x_A          178 RKMKRPVVGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISMAQLVQPIANGAFVLSIDTDFDGCMKLIREITAELPI  257 (486)
T ss_dssp             HHTTCCCCEEEECCCSHHHHHHHHHHHHHTCCEEEEEEGGGCCHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSCE
T ss_pred             HHcCCCCeEEEEcCCCHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHhCCCEEEEECCCHHHHHHHHHHHHhcCCE
Confidence            55555467899999999999999999999999999999976899999999999999999999999999999999988899


Q ss_pred             cccCCCChHhHhhHHHHHHHHHHhcCCCCCcEEEEcCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEeccCCCchhhHHH
Q 009957          294 YLANSLNSLRLEGQKTAAVEILQQFDWEVPDWVIVPGGNLGNIYAFYKGFKMCHELGLVDRMPRLVCTQAANANPLYLYY  373 (521)
Q Consensus       294 ~~~ns~Np~~i~G~~T~a~EI~eQl~~~~pD~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prli~Vq~~~~~~l~~~~  373 (521)
                      |++|++||++++||+|+++||++|++|..||+||||+|+||+++|+++||+++++|||+++.+|||+||+++++++.++|
T Consensus       258 ~~vns~N~~~i~gq~t~~~Ei~~ql~~~~~D~vvvpvG~GG~i~Gi~~a~k~~~~~Gli~p~~rvi~Ve~~~~~~l~~~~  337 (486)
T 1e5x_A          258 YLANSLNSLRLEGQKTAAIEILQQFDWQVPDWVIVPGGNLGNIYAFYKGFKXCQELGLVDRIPRMVCAQAANANPLYLHY  337 (486)
T ss_dssp             EEGGGSHHHHHHHHTHHHHHHHHHTTSCCCSEEEEECSSTHHHHHHHHHHHHHHHTTSSSCCCEEEEEEETTSSTHHHHH
T ss_pred             EEeCCCCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCcHHHHHHHHHHHHHhhhhccCCCCCEEEEEecCCCchHHHHH
Confidence            99999999999999999999999998767999999999999999999999999999998889999999999999999999


Q ss_pred             hhCCcceeecccccchhhhhccCCCccHHHHHHHHHhcCCeEEEeCHHHHHHHHHHHHhcCCeeccchHHHHHHHHHHHh
Q 009957          374 KSGWKDFKAVKASTTFASAIQIGDPVSIDRAVYALKNCNGIVEEATEEELMDAMAQADSTGMFICPHTGVALTALIKLRN  453 (521)
Q Consensus       374 ~~G~~~~~~~~~~~Tia~~i~i~~P~~~~~~l~~l~~~~g~~v~Vsd~Ei~~A~~~l~~eGi~~ePssA~alAa~~~l~~  453 (521)
                      ++|...+.+.....|++++|+++.|.++++.++.+++++|.++.|+|+|++++++.++++|+++||+||++++|++++.+
T Consensus       338 ~~G~~~~~~~~~~~t~a~gi~i~~p~~~~~~~~~~~~~~g~~~~Vsd~e~~~ai~l~~~eGi~~ePssA~alaa~~~~~~  417 (486)
T 1e5x_A          338 KSGWKDFKPMTASTTFASAIQIGDPVSIDRAVYALKKCNGIVEEATEEELMDAMAQADSTGMFICPHTGVALTALFKLRN  417 (486)
T ss_dssp             HTTTTTCCC----------------CCCHHHHHHHHHTTCEEEEECHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHH
T ss_pred             HcCCCccccCCCCCeeCccccCCCCccHHHHHHHHhccCCeEEEECHHHHHHHHHHHHHCCeEEChhHHHHHHHHHHHHH
Confidence            99964455656678999999999999999999889999998999999999999996588999999999999999999998


Q ss_pred             cCCCCCCCeEEEEeCCCCCCchHHHHhhhcchhHHhhhhhcCCCcccCCCHHHHHHHHHHHhccc
Q 009957          454 SGVIGPLDRTVVVSTAHGLKFTQSKIDYHSKEIKDMACRFANPPVQVKADFGAVMDVLKKYLGSK  518 (521)
Q Consensus       454 ~g~i~~~~~vV~v~TG~g~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  518 (521)
                      ++.+.++++||+++|||+.||.+++.+++..+++++.....++...+++|+++|++.|.++++.+
T Consensus       418 ~g~~~~~~~vV~i~Tg~~~k~~~~v~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  482 (486)
T 1e5x_A          418 QGVIAPTDRTVVVSTAHGLKFTQSKIDYHSNAIPDMACRFSNPPVDVKADFGAVMDVLKSYLGSN  482 (486)
T ss_dssp             TTSSCTTCCEEEEECBCGGGGHHHHHHHHTTCCSSCCCTTCCCCEEEESCHHHHHHHHHHHTTCC
T ss_pred             hcCCCCCCeEEEEeCCCCccCHHHHHHHhcCCCcchhhhhhccceecCCCHHHHHHHHHHHhhhc
Confidence            88788899999999999999999999987766544443444566789999999999999987654
>1kl7_A Threonine synthase; threonine synthesis, pyridoxal 5-phosphate, beta-family, MON lyase; HET: PLP; 2.70A {Saccharomyces cerevisiae} SCOP: c.79.1.1 Back     alignment and structure
>4f4f_A Threonine synthase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.90A {Brucella melitensis BV} Back     alignment and structure
>3v7n_A Threonine synthase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, lyase; 1.40A {Burkholderia thailandensis} Back     alignment and structure
>3aey_A Threonine synthase; PLP, pyridoxal phosphate, lyase; 1.92A {Thermus thermophilus} PDB: 1uin_A* 1uim_A* 3aex_A* 1v7c_A Back     alignment and structure
>2zsj_A Threonine synthase; PLP dependent enzyme, lyase; HET: PLP; 1.80A {Aquifex aeolicus} Back     alignment and structure
>2d1f_A Threonine synthase; amino acid synthesis, pyridoxal-5'-phosphate, PLP, lyase; HET: PLP; 2.50A {Mycobacterium tuberculosis} Back     alignment and structure
>1vb3_A Threonine synthase; PLP-dependent enzyme, lyase; HET: KPA; 2.20A {Escherichia coli} SCOP: c.79.1.1 Back     alignment and structure
>3ss7_X D-serine dehydratase; type II fold, ALFA,beta-elimination, P 5'-phosphate, lyase; HET: PLP; 1.55A {Escherichia coli} PDB: 3ss9_X* 3r0x_A* 3r0z_A Back     alignment and structure
>1p5j_A L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo sapiens} SCOP: c.79.1.1 PDB: 1pwh_A* 1pwe_A* Back     alignment and structure
>4h27_A L-serine dehydratase/L-threonine deaminase; PLP dependent typeii, PLP binding, liver, lyase; HET: LLP; 1.30A {Homo sapiens} PDB: 1p5j_A* 1pwh_A* 1pwe_A* Back     alignment and structure
>2rkb_A Serine dehydratase-like; PLP bound enzyme, enzyme found in human cells, lyase, pyridoxal phosphate; HET: PLP; 2.80A {Homo sapiens} Back     alignment and structure
>3iau_A Threonine deaminase; pyridoxal phosphate, amino-acid biosynthesis, defensive PROT jasmonic acid pathway, jasmonic acid,structural genomics; HET: LLP 15P; 2.35A {Solanum lycopersicum} Back     alignment and structure
>1ve5_A Threonine deaminase; riken structural genomics/Pro initiative, RSGI, structural genomics, lyase; HET: PLP; 2.15A {Thermus thermophilus} SCOP: c.79.1.1 Back     alignment and structure
>3l6b_A Serine racemase; pyridoxal phosphate, PLP, isomerase; HET: PLP; 1.50A {Homo sapiens} SCOP: c.79.1.0 PDB: 3l6r_A* 3hmk_A* 3l6c_A* Back     alignment and structure
>1y7l_A O-acetylserine sulfhydrylase, O-acetylserine (thiol)-lyase; X-RAY crystallography, sulfhydrylase; HET: LLP; 1.55A {Haemophilus influenzae} SCOP: c.79.1.1 PDB: 3iqg_X* 3iqh_X* 3iqi_X* 1fcj_A* 1oas_A* 1d6s_A* Back     alignment and structure
>4d9i_A Diaminopropionate ammonia-lyase; fold type II PLP-dependent enzyme, tryptophan synthase beta like PLP-dependent enzymes superfamily; HET: IT1; 2.00A {Escherichia coli} PDB: 4d9g_A* 4d9n_A* 4d9k_A* 4d9m_A* Back     alignment and structure
>1v71_A Serine racemase, hypothetical protein C320.14 in chromosome III; dimer, PLP, isomerase; HET: PLP; 1.70A {Schizosaccharomyces pombe} SCOP: c.79.1.1 PDB: 1wtc_A* 2zpu_A* 2zr8_A* Back     alignment and structure
>1tdj_A Biosynthetic threonine deaminase; allostery, cooperative, tetramer, regulation, pyridoxal PHOS isoleucine biosynthesis; HET: PLP; 2.80A {Escherichia coli} SCOP: c.79.1.1 d.58.18.2 d.58.18.2 Back     alignment and structure
>1ve1_A O-acetylserine sulfhydrylase; PLP, transferase, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.45A {Thermus thermophilus} SCOP: c.79.1.1 PDB: 2eco_A* 2ecq_A* 2efy_A* Back     alignment and structure
>2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism, cysteine biosynthesis, transferase; HET: LLP; 1.80A {Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* 3rr2_A Back     alignment and structure
>1o58_A O-acetylserine sulfhydrylase; TM0665, structural genomics, J protein structure initiative, joint center for structural G transferase; 1.80A {Thermotoga maritima} SCOP: c.79.1.1 PDB: 3fca_A* Back     alignment and structure
>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3spx_A* 3t4p_A* 4air_A* Back     alignment and structure
>2v03_A Cysteine synthase B; pyridoxal phosphate, cysteine biosynthesis, transferase, ENZ kinetics, enzymatic sythesis of novel compounds; HET: LLP CIT; 1.33A {Escherichia coli} PDB: 2bhs_A* 2bht_A* 2jc3_A* Back     alignment and structure
>1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A* Back     alignment and structure
>2egu_A Cysteine synthase; O-acetylserine sulfhydrase, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; 1.90A {Geobacillus kaustophilus} Back     alignment and structure
>2pqm_A Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.86A {Entamoeba histolytica} PDB: 3bm5_A* Back     alignment and structure
>3dwg_A Cysteine synthase B; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} SCOP: c.79.1.0 PDB: 3fgp_A* 3dki_A* 3dwi_A* Back     alignment and structure
>4aec_A Cysteine synthase, mitochondrial; lyase, cysteine synthesis, assimilatory sulfate reduction, S plant inorganic sulfur uptake; HET: PLP; 2.40A {Arabidopsis thaliana} Back     alignment and structure
>3vc3_A Beta-cyanoalnine synthase; beta-cyanoalanine synthase, transferase; HET: C6P; 1.77A {Glycine max} PDB: 3vbe_A* Back     alignment and structure
>1v8z_A Tryptophan synthase beta chain 1; beta+alpha, riken structural genomics/proteomics initiative, structural genomics, lyase; HET: PLP; 2.21A {Pyrococcus furiosus} SCOP: c.79.1.1 PDB: 1wdw_B* Back     alignment and structure
>1jbq_A B, cystathionine beta-synthase, serine sulfhydrase; fold type II of PLP enzymes, lyase; HET: HEM PLP; 2.60A {Homo sapiens} SCOP: c.79.1.1 PDB: 1m54_A* Back     alignment and structure
>1wkv_A Cysteine synthase; homodimer, open alpha/beta folding, transferase; HET: PLP; 2.00A {Aeropyrum pernix} SCOP: c.79.1.1 Back     alignment and structure
>1tzj_A ACC deaminase, 1-aminocyclopropane-1-carboxylate deaminase; substrate, PLP, crystal, complex, hydrolase; HET: PLP; 1.99A {Pseudomonas SP} SCOP: c.79.1.1 PDB: 1rqx_A* 1tz2_A* 1tyz_A* 1tzk_A* 1tzm_A* Back     alignment and structure
>1x1q_A Tryptophan synthase beta chain; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.50A {Thermus thermophilus} Back     alignment and structure
>4d9b_A D-cysteine desulfhydrase; fold type II PLP-dependent enzyme or tryptophan synthase BET like family, PLP dependent enzyme, lyase; HET: PMP; 1.67A {Salmonella typhimurium} PDB: 4d96_A* 4d9c_A* 4d9e_A* 4d9f_A* 4d97_A* 4d8w_A* 4d8u_A* 4d8t_A* 4d92_A* 4d99_A* Back     alignment and structure
>1f2d_A 1-aminocyclopropane-1-carboxylate deaminase; carbon-carbon L open twisted alpha/beta, lyase; HET: PLP; 2.00A {Williopsis saturnus} SCOP: c.79.1.1 PDB: 1j0e_A* 1j0d_A* 1j0c_A* Back     alignment and structure
>2o2e_A Tryptophan synthase beta chain; amino-acid biosynthesis, tryptophan biosynthesis, structural genomics; 2.20A {Mycobacterium tuberculosis} PDB: 2o2j_A Back     alignment and structure
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A* Back     alignment and structure
>1qop_B Tryptophan synthase beta chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.79.1.1 PDB: 1k7e_B* 1k7f_B* 1kfb_B* 1k3u_B* 1tjp_B* 1wbj_B* 2cli_B* 2clk_B* 2cll_B* 2j9x_B* 3cep_B* 1kfc_B* 1k8x_B* 1kfj_B* 1kfk_B* 2rh9_B* 2rhg_B* 2j9y_B* 1cw2_B* 1a5s_B* ... Back     alignment and structure
>1j0a_A 1-aminocyclopropane-1-carboxylate deaminase; PLP dependent, lyase; HET: PLP; 2.50A {Pyrococcus horikoshii} SCOP: c.79.1.1 PDB: 1j0b_A* Back     alignment and structure
>1vp8_A Hypothetical protein AF0103; putative pyruvate kinase, structural genomics, joint center structural genomics, JCSG; HET: MSE FMN; 1.30A {Archaeoglobus fulgidus} SCOP: c.49.1.2 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 521
d1e5xa_477 c.79.1.1 (A:) Threonine synthase {Mouse-ear cress 1e-144
d1v7ca_351 c.79.1.1 (A:) Threonine synthase {Thermus thermoph 2e-42
d1vb3a1428 c.79.1.1 (A:1-428) Threonine synthase {Escherichia 5e-32
d1v71a1318 c.79.1.1 (A:6-323) Hypothetical protein C320.14 (S 5e-22
d1o58a_293 c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cystei 9e-21
d1jbqa_355 c.79.1.1 (A:) Cystathionine beta-synthase {Human ( 5e-19
d1kl7a_511 c.79.1.1 (A:) Threonine synthase {Baker's yeast (S 1e-18
d1tdja1331 c.79.1.1 (A:5-335) Threonine deaminase {Escherichi 1e-18
d1v8za1386 c.79.1.1 (A:1-386) Tryptophan synthase, beta-subun 4e-17
d1tyza_338 c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate de 7e-17
d1f2da_341 c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate de 2e-15
d1ve1a1302 c.79.1.1 (A:1-302) O-acetylserine sulfhydrylase (C 6e-14
d1ve5a1310 c.79.1.1 (A:2-311) Threonine deaminase {Thermus th 1e-13
d1p5ja_319 c.79.1.1 (A:) L-serine dehydratase {Human (Homo sa 2e-13
d1y7la1310 c.79.1.1 (A:2-311) O-acetylserine sulfhydrylase (C 3e-12
d2bhsa1292 c.79.1.1 (A:2-293) O-acetylserine sulfhydrylase (C 4e-12
d1fcja_302 c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cystei 5e-12
d1z7wa1320 c.79.1.1 (A:3-322) O-acetylserine sulfhydrylase (C 2e-11
d1j0aa_325 c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate de 2e-10
d1wkva1382 c.79.1.1 (A:2-383) O-acetylserine sulfhydrylase (C 3e-08
>d1e5xa_ c.79.1.1 (A:) Threonine synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 477 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Threonine synthase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  421 bits (1082), Expect = e-144
 Identities = 423/471 (89%), Positives = 439/471 (93%)

Query: 49  ASKNRRAADENIRDEARRQRSTTNNTFSAKYVPFNAGPDSPEFYSLDEIVYRSRSGGLLD 108
           A K     ++NIRDEARR RS   N FSAKYVPFNA P S E YSLDEIVYRSRSGGLLD
Sbjct: 4   AVKPPHRTEDNIRDEARRNRSNAVNPFSAKYVPFNAAPGSTESYSLDEIVYRSRSGGLLD 63

Query: 109 VQHDMESLKKFDGAYWRDLFDSRVGKTTWPYGSGVWSKKEWVLPEIDPDDIVSAFEGNSN 168
           V+HDME+LK+FDGAYWRDLFDSRVGK+TWPYGSGVWSKKEWVLPEID DDIVSAFEGNSN
Sbjct: 64  VEHDMEALKRFDGAYWRDLFDSRVGKSTWPYGSGVWSKKEWVLPEIDDDDIVSAFEGNSN 123

Query: 169 LFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCAST 228
           LFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCAST
Sbjct: 124 LFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCAST 183

Query: 229 GDTSAALSAYCASAGIPSIVFLPANKISIAQLVQPIANGAFVLSIDTDFDGCMKLIREVT 288
           GDTSAALSAYCASAGIPSIVFLPANKIS+AQLVQPIANGAFVLSIDTDFDGCMKLIRE+T
Sbjct: 184 GDTSAALSAYCASAGIPSIVFLPANKISMAQLVQPIANGAFVLSIDTDFDGCMKLIREIT 243

Query: 289 SELPIYLANSLNSLRLEGQKTAAVEILQQFDWEVPDWVIVPGGNLGNIYAFYKGFKMCHE 348
           +ELPIYLANSLNSLRLEGQKTAA+EILQQFDW+VPDWVIVPGGNLGNIYAFYKGFKMC E
Sbjct: 244 AELPIYLANSLNSLRLEGQKTAAIEILQQFDWQVPDWVIVPGGNLGNIYAFYKGFKMCQE 303

Query: 349 LGLVDRMPRLVCTQAANANPLYLYYKSGWKDFKAVKASTTFASAIQIGDPVSIDRAVYAL 408
           LGLVDR+PR+VC QAANANPLYL+YKSGWKDFK + ASTTFASAIQIGDPVSIDRAVYAL
Sbjct: 304 LGLVDRIPRMVCAQAANANPLYLHYKSGWKDFKPMTASTTFASAIQIGDPVSIDRAVYAL 363

Query: 409 KNCNGIVEEATEEELMDAMAQADSTGMFICPHTGVALTALIKLRNSGVIGPLDRTVVVST 468
           K CNGIVEEATEEELMDAMAQADSTGMFICPHTGVALTAL KLRN GVI P DRTVVVST
Sbjct: 364 KKCNGIVEEATEEELMDAMAQADSTGMFICPHTGVALTALFKLRNQGVIAPTDRTVVVST 423

Query: 469 AHGLKFTQSKIDYHSKEIKDMACRFANPPVQVKADFGAVMDVLKKYLGSKA 519
           AHGLKFTQSKIDYHS  I DMACRF+NPPV VKADFGAVMDVLK YLGS  
Sbjct: 424 AHGLKFTQSKIDYHSNAIPDMACRFSNPPVDVKADFGAVMDVLKSYLGSNT 474
>d1v7ca_ c.79.1.1 (A:) Threonine synthase {Thermus thermophilus [TaxId: 274]} Length = 351 Back     information, alignment and structure
>d1vb3a1 c.79.1.1 (A:1-428) Threonine synthase {Escherichia coli [TaxId: 562]} Length = 428 Back     information, alignment and structure
>d1v71a1 c.79.1.1 (A:6-323) Hypothetical protein C320.14 (SPCC320.14, SPCC330.15c) {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 318 Back     information, alignment and structure
>d1o58a_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine synthase) {Thermotoga maritima [TaxId: 2336]} Length = 293 Back     information, alignment and structure
>d1jbqa_ c.79.1.1 (A:) Cystathionine beta-synthase {Human (Homo sapiens) [TaxId: 9606]} Length = 355 Back     information, alignment and structure
>d1kl7a_ c.79.1.1 (A:) Threonine synthase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 511 Back     information, alignment and structure
>d1tdja1 c.79.1.1 (A:5-335) Threonine deaminase {Escherichia coli [TaxId: 562]} Length = 331 Back     information, alignment and structure
>d1v8za1 c.79.1.1 (A:1-386) Tryptophan synthase, beta-subunit {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 386 Back     information, alignment and structure
>d1tyza_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Pseudomonas sp., strain ACP [TaxId: 306]} Length = 338 Back     information, alignment and structure
>d1f2da_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Yeast (Hansenula saturnus) [TaxId: 4906]} Length = 341 Back     information, alignment and structure
>d1ve1a1 c.79.1.1 (A:1-302) O-acetylserine sulfhydrylase (Cysteine synthase) {Thermus thermophilus [TaxId: 274]} Length = 302 Back     information, alignment and structure
>d1ve5a1 c.79.1.1 (A:2-311) Threonine deaminase {Thermus thermophilus [TaxId: 274]} Length = 310 Back     information, alignment and structure
>d1p5ja_ c.79.1.1 (A:) L-serine dehydratase {Human (Homo sapiens) [TaxId: 9606]} Length = 319 Back     information, alignment and structure
>d1y7la1 c.79.1.1 (A:2-311) O-acetylserine sulfhydrylase (Cysteine synthase) {Haemophilus influenzae [TaxId: 727]} Length = 310 Back     information, alignment and structure
>d2bhsa1 c.79.1.1 (A:2-293) O-acetylserine sulfhydrylase (Cysteine synthase) {Escherichia coli, isoform B (CysM) [TaxId: 562]} Length = 292 Back     information, alignment and structure
>d1fcja_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine synthase) {Salmonella typhimurium [TaxId: 90371]} Length = 302 Back     information, alignment and structure
>d1z7wa1 c.79.1.1 (A:3-322) O-acetylserine sulfhydrylase (Cysteine synthase) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 320 Back     information, alignment and structure
>d1j0aa_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 325 Back     information, alignment and structure
>d1wkva1 c.79.1.1 (A:2-383) O-acetylserine sulfhydrylase (Cysteine synthase) {Archaeon Aeropyrum pernix [TaxId: 56636]} Length = 382 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query521
d1e5xa_477 Threonine synthase {Mouse-ear cress (Arabidopsis t 100.0
d1vb3a1428 Threonine synthase {Escherichia coli [TaxId: 562]} 100.0
d1v7ca_351 Threonine synthase {Thermus thermophilus [TaxId: 2 100.0
d1kl7a_511 Threonine synthase {Baker's yeast (Saccharomyces c 100.0
d1p5ja_319 L-serine dehydratase {Human (Homo sapiens) [TaxId: 100.0
d1v71a1318 Hypothetical protein C320.14 (SPCC320.14, SPCC330. 100.0
d1tdja1331 Threonine deaminase {Escherichia coli [TaxId: 562] 100.0
d1ve5a1310 Threonine deaminase {Thermus thermophilus [TaxId: 100.0
d1o58a_293 O-acetylserine sulfhydrylase (Cysteine synthase) { 100.0
d2bhsa1292 O-acetylserine sulfhydrylase (Cysteine synthase) { 100.0
d1jbqa_355 Cystathionine beta-synthase {Human (Homo sapiens) 100.0
d1z7wa1320 O-acetylserine sulfhydrylase (Cysteine synthase) { 100.0
d1ve1a1302 O-acetylserine sulfhydrylase (Cysteine synthase) { 100.0
d1y7la1310 O-acetylserine sulfhydrylase (Cysteine synthase) { 100.0
d1fcja_302 O-acetylserine sulfhydrylase (Cysteine synthase) { 100.0
d1wkva1382 O-acetylserine sulfhydrylase (Cysteine synthase) { 100.0
d1v8za1386 Tryptophan synthase, beta-subunit {Archaeon Pyroco 100.0
d1qopb_390 Tryptophan synthase, beta-subunit {Salmonella typh 100.0
d1j0aa_325 1-aminocyclopropane-1-carboxylate deaminase {Archa 100.0
d1tyza_338 1-aminocyclopropane-1-carboxylate deaminase {Pseud 100.0
d1f2da_341 1-aminocyclopropane-1-carboxylate deaminase {Yeast 100.0
d1vp8a_190 Hypothetical protein AF0103 {Archaeoglobus fulgidu 91.64
>d1e5xa_ c.79.1.1 (A:) Threonine synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Threonine synthase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=1.3e-95  Score=785.54  Aligned_cols=467  Identities=90%  Similarity=1.413  Sum_probs=417.5

Q ss_pred             cccCCcchHHHHHhcCCCCCCccceeecCCCCCCCCCCccCCCCceeecCCCCcceeccccchhccCChHHHHHhhhhcc
Q 009957           53 RRAADENIRDEARRQRSTTNNTFSAKYVPFNAGPDSPEFYSLDEIVYRSRSGGLLDVQHDMESLKKFDGAYWRDLFDSRV  132 (521)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~cg~~~~~~~~~~~c~cGGll~~~~d~~~~~~~~~~~~~~~~~~~~  132 (521)
                      ....++|||+||||+.+.+++.+|++|+||+..++|+++|+.++++|+|+|||+|++.||++.+...+.+.|++.|+.|.
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~y~~~~~~~~c~~g~~l~~~~d~~~~~~~~~~~~~~~~~~r~   87 (477)
T d1e5xa_           8 PHRTEDNIRDEARRNRSNAVNPFSAKYVPFNAAPGSTESYSLDEIVYRSRSGGLLDVEHDMEALKRFDGAYWRDLFDSRV   87 (477)
T ss_dssp             TCCHHHHHCCC------CCCCCCCEEEEESSCSSCCCBCTTSCCCBCC----CBEEEEECHHHHHTSCHHHHHHHHHTTT
T ss_pred             CCCcccccchhhcccCCCCCCcccCCCCCcCCCCCCCCccCcccceEECCCCCeEEEecchhhhcccchhhhHHHHhccc
Confidence            34478999999999999999999999999999999999999999999999999999999999999888889999999999


Q ss_pred             CCCCCCCCCccccccccccCCCCcchhhcccccCCccccccccccccCCCCcEEEecCCCCCCCChhHHHHHHHHHHHHH
Q 009957          133 GKTTWPYGSGVWSKKEWVLPEIDPDDIVSAFEGNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNR  212 (521)
Q Consensus       133 ~~~~~~~~~~iwr~~~~~lP~~~~~~~vsl~eG~TPL~~~~~l~~~~lg~~~l~vK~E~~nPTGSfKDRga~~~v~~a~~  212 (521)
                      ....|||.+|||||++|+||..+.+.+++|+||+|||+++++|+++++|+.+||+|+|++|||||||||++.++++.+.+
T Consensus        88 ~~~~~~~~~g~wr~~~~~lp~~~~~~~v~lgeG~TPLv~~~~L~~~~lG~~~ly~K~E~~nPTGSfKDRga~~~i~~a~~  167 (477)
T d1e5xa_          88 GKSTWPYGSGVWSKKEWVLPEIDDDDIVSAFEGNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNR  167 (477)
T ss_dssp             TCCCTTTTSTTGGGGGGTCTTCCGGGCCCCCCCCCCEEECHHHHHHHHCCSSEEEEETTSSTTSBTTHHHHHHHHHHHHH
T ss_pred             cccCCcccCCceeehhhcCCCCCCCCccccCCCCCceEEchhhhHhhCCCceEEEEECCCCCCcccHHHHHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999998764687899999999999999999999999999988


Q ss_pred             HHhcCCCceEEEEeCCchHHHHHHHHHHhcCCCEEEEccCCcCCHHhHHhHHhCCCEEEEECCCHHHHHHHHHHHHhcCC
Q 009957          213 LRKMKRPVVGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISIAQLVQPIANGAFVLSIDTDFDGCMKLIREVTSELP  292 (521)
Q Consensus       213 ~~~~g~~~~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~~dd~~~~~~~~~~~~~  292 (521)
                      +++...+..+|+++||||||+|+|+||++.|++|+||+|++++++.|+.|++.+||+|+.++|+||+|++.+++++++.+
T Consensus       168 ~~~~~~~~~~vv~aSsGNtg~AlAa~aa~~Gi~~~I~~P~~~~s~~k~~~~~~~GA~V~~v~g~~dda~~~~~e~a~~~~  247 (477)
T d1e5xa_         168 LRKMKRPVVGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISMAQLVQPIANGAFVLSIDTDFDGCMKLIREITAELP  247 (477)
T ss_dssp             HHHTTCCCCEEEECCCSHHHHHHHHHHHHHTCCEEEEEEGGGCCHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSC
T ss_pred             hccccCCcceEEeecCchHHHHHHHHHHhcCCCeEEEeCCCCcCHHHHHHHHhcCccccccccCchhhHHHhhhhccccc
Confidence            76555556789999999999999999999999999999998788899999999999999999999999999999999999


Q ss_pred             ccccCCCChHhHhhHHHHHHHHHHhcCCCCCcEEEEcCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEeccCCCchhhHH
Q 009957          293 IYLANSLNSLRLEGQKTAAVEILQQFDWEVPDWVIVPGGNLGNIYAFYKGFKMCHELGLVDRMPRLVCTQAANANPLYLY  372 (521)
Q Consensus       293 ~~~~ns~Np~~i~G~~T~a~EI~eQl~~~~pD~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prli~Vq~~~~~~l~~~  372 (521)
                      +|..|+.||++++||+|+++||++|++|..||+|++|+|+||+++|+++||++++++|++++.|++++||++++++++++
T Consensus       248 ~~~~~~~N~~~~~g~~t~~~Ei~~ql~~~~pd~v~vp~G~gg~~~g~~~g~~~l~~~G~~~~~P~~~~v~a~~~~~~~~~  327 (477)
T d1e5xa_         248 IYLANSLNSLRLEGQKTAAIEILQQFDWQVPDWVIVPGGNLGNIYAFYKGFKMCQELGLVDRIPRMVCAQAANANPLYLH  327 (477)
T ss_dssp             EEEGGGSHHHHHHHHTHHHHHHHHHTTSCCCSEEEEECSSTHHHHHHHHHHHHHHHTTSSSCCCEEEEEEETTSSTHHHH
T ss_pred             eecccccccccchhhhHHHHHHHHhhccccceeeeecccCCcchhhHHHHHHHHhhcCccccCceEEEEeccchhhHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhCCcceeecccccchhhhhccCCCccHHHHHHHHHhcCCeEEEeCHHHHHHHHHHHHhcCCeeccchHHHHHHHHHHH
Q 009957          373 YKSGWKDFKAVKASTTFASAIQIGDPVSIDRAVYALKNCNGIVEEATEEELMDAMAQADSTGMFICPHTGVALTALIKLR  452 (521)
Q Consensus       373 ~~~G~~~~~~~~~~~Tia~~i~i~~P~~~~~~l~~l~~~~g~~v~Vsd~Ei~~A~~~l~~eGi~~ePssA~alAa~~~l~  452 (521)
                      |+.|...+.+.....|++++|+++.|.+++++++.+++++|.++.|+|+|+++++++++++||++||+||+++||+++++
T Consensus       328 ~~~g~~~~~~~~~~~T~a~~i~i~~p~~~~~~l~~~~~~~g~~~~VsDeei~~a~~l~~~eGi~vePssA~alAal~kl~  407 (477)
T d1e5xa_         328 YKSGWKDFKPMTASTTFASAIQIGDPVSIDRAVYALKKCNGIVEEATEEELMDAMAQADSTGMFICPHTGVALTALFKLR  407 (477)
T ss_dssp             HHTTTTTCCC----------------CCCHHHHHHHHHTTCEEEEECHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred             HHcCCCcccccccccccccccccccccchHHHHHHHhhcCceEEecCHHHHHHHHHHHHHCCcEEChHHHHHHHHHHHHH
Confidence            99998777777788999999999999999999999999999999999999999998788899999999999999999999


Q ss_pred             hcCCCCCCCeEEEEeCCCCCCchHHHHhhhcchhHHhhhhhcCCCcccCCCHHHHHHHHHHHhcccC
Q 009957          453 NSGVIGPLDRTVVVSTAHGLKFTQSKIDYHSKEIKDMACRFANPPVQVKADFGAVMDVLKKYLGSKA  519 (521)
Q Consensus       453 ~~g~i~~~~~vV~v~TG~g~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  519 (521)
                      ++|.+.++++||+++||||+||++++.++|...++++..++.+.+..+++|+++|+++|+.++..|.
T Consensus       408 ~~g~i~~~~~VVvl~Tg~glKf~~~~~~~~~~~~pd~~~~~~~~~~~v~~~~~av~~~i~~~~~~n~  474 (477)
T d1e5xa_         408 NQGVIAPTDRTVVVSTAHGLKFTQSKIDYHSNAIPDMACRFSNPPVDVKADFGAVMDVLKSYLGSNT  474 (477)
T ss_dssp             HTTSSCTTCCEEEEECBCGGGGHHHHHHHHTTCCSSCCCTTCCCCEEEESCHHHHHHHHHHHTTCCS
T ss_pred             HhCCCCCCCcEEEEeCcCcccCHHHHHHhcccCCCchHHHhccCCccCCCCHHHHHHHHHHHhhhcc
Confidence            9999999999999999999999999999999888887777888888999999999999999998763
>d1vb3a1 c.79.1.1 (A:1-428) Threonine synthase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1v7ca_ c.79.1.1 (A:) Threonine synthase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1kl7a_ c.79.1.1 (A:) Threonine synthase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1p5ja_ c.79.1.1 (A:) L-serine dehydratase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1v71a1 c.79.1.1 (A:6-323) Hypothetical protein C320.14 (SPCC320.14, SPCC330.15c) {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure
>d1tdja1 c.79.1.1 (A:5-335) Threonine deaminase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ve5a1 c.79.1.1 (A:2-311) Threonine deaminase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1o58a_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine synthase) {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2bhsa1 c.79.1.1 (A:2-293) O-acetylserine sulfhydrylase (Cysteine synthase) {Escherichia coli, isoform B (CysM) [TaxId: 562]} Back     information, alignment and structure
>d1jbqa_ c.79.1.1 (A:) Cystathionine beta-synthase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1z7wa1 c.79.1.1 (A:3-322) O-acetylserine sulfhydrylase (Cysteine synthase) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1ve1a1 c.79.1.1 (A:1-302) O-acetylserine sulfhydrylase (Cysteine synthase) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1y7la1 c.79.1.1 (A:2-311) O-acetylserine sulfhydrylase (Cysteine synthase) {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1fcja_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine synthase) {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1wkva1 c.79.1.1 (A:2-383) O-acetylserine sulfhydrylase (Cysteine synthase) {Archaeon Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d1v8za1 c.79.1.1 (A:1-386) Tryptophan synthase, beta-subunit {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1qopb_ c.79.1.1 (B:) Tryptophan synthase, beta-subunit {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1j0aa_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1tyza_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Pseudomonas sp., strain ACP [TaxId: 306]} Back     information, alignment and structure
>d1f2da_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Yeast (Hansenula saturnus) [TaxId: 4906]} Back     information, alignment and structure
>d1vp8a_ c.49.1.2 (A:) Hypothetical protein AF0103 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure