Citrus Sinensis ID: 009975

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-
Protein Sequence
MAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMMSS
Secondary Structure (PSIPRED)
cHHHHHHHccccccHHHHHcHHHHHHHHHccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccHHHHHHcHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccHHcHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
HHHHHccccHHHcccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccHHHHHHcHHHHHHHHHccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccHHHHccHHHHHHHHHHHccHHHHHHHcHHHHHHHHccccHHHHHHHHHcHHHHHHHHcHHHHHHcHHHHHHHHHccccHHHHHHHHccHHHHHHcccccHHHHcHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHccccHHHHHHHHHccHHHHHHccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcHHHccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcHHHHHHHcHHHHHHccccccHHHHHHHHHHHHHHHHHHcHHHHHHHcHHHHHHHcccccHHHHHHHHHHHHHHHHHccHHHHHHcHHHHHHHHcccccccccHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MAEELGVFIPyvggvehahvllppletlctveetCVRDKAVESLCRIGsqmresdlvdwYIPLVKRLAAGEWFTARVSACGLfhiaypsapdILKTELRSIYTQLcqddmpmvRRSAASNLgkfaatvepahlkTDIMSIFEdltqddqdSVRLLAVEGCAAlgkllepqdcvahILPVIVNFSQDKSWRVRYMVANQLYELCeavgpeptrmdlvPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCvkelssdssQHVRSALASVIMGmapllgkdatIEQLLPIFLSLlkdefpdvRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLAsqlgvgffddKLGALCMQWLQDKVYSIRDAAANNLKRLAEefgpewamqhitpqvleminnphyLYRMTILRAISLLapvmgseitcsrllpvvinaskdrvpniKFNVAKVLQSLIpivdqsmvekTIRPClveltedpdvdvRFFATQAIQSIDHVMMSS
Flexible Loop (DISEMBL)
MAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCrigsqmresdlvdWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCeavgpeptrMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSlipivdqsmvEKTIRPCLVEltedpdvdvRFFATQAiqsidhvmmss
Low Complexity Region (SEG)
MAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMMSS
Disordered region (IsUnstruct)
****LGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKEL******HVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSID******
Disordered Region (DISOPRED)
MAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMM**
Disordered Region (DISEMBL)
MAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKE**********SALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMMSS
Disordered Region (DISPRO)
MAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHV****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMMSS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	521	2.2.26 [Sep-21-2011]
Q38950	587	Serine/threonine-protein	yes	no	0.850	0.754	0.934	0.0
Q38951	587	Serine/threonine-protein	no	no	0.850	0.754	0.911	0.0
Q38845	588	Serine/threonine-protein	no	no	0.900	0.797	0.864	0.0
P36875	395	Protein phosphatase PP2A	N/A	no	0.756	0.997	0.893	0.0
Q32PI5	589	Serine/threonine-protein	yes	no	0.980	0.867	0.574	1e-171
P30153	589	Serine/threonine-protein	yes	no	0.980	0.867	0.574	1e-171
P54612	589	Serine/threonine-protein	yes	no	0.980	0.867	0.574	1e-171
Q76MZ3	589	Serine/threonine-protein	yes	no	0.980	0.867	0.574	1e-171
Q54QR9	584	Serine/threonine-protein	yes	no	0.967	0.863	0.560	1e-167
P54613	602	Serine/threonine-protein	no	no	0.980	0.848	0.563	1e-166

>sp|Q38950|2AAB_ARATH Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform OS=Arabidopsis thaliana GN=PP2AA2 PE=1 SV=2

 Score = 1010 bits (2611), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 487/521 (93%), Positives = 510/521 (97%)

Query: 1   MAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWY 60
           MAEELGVFIPYVGGVE+AHVLLPPLETL TVEETCVR+KAVESLCR+GSQMRESDLVD +
Sbjct: 67  MAEELGVFIPYVGGVEYAHVLLPPLETLSTVEETCVREKAVESLCRVGSQMRESDLVDHF 126

Query: 61  IPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASN 120
           I LVKRLAAGEWFTARVSACG+FHIAYPSAPD+LKTELRS+YTQLCQDDMPMVRR+AA+N
Sbjct: 127 ISLVKRLAAGEWFTARVSACGVFHIAYPSAPDMLKTELRSLYTQLCQDDMPMVRRAAATN 186

Query: 121 LGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVI 180
           LGKFAATVE AHLKTD+MS+FEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCV HILPVI
Sbjct: 187 LGKFAATVESAHLKTDVMSMFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVQHILPVI 246

Query: 181 VNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTK 240
           VNFSQDKSWRVRYMVANQLYELCEAVGPEPTR +LVPAYVRLLRDNEAEVRIAAAGKVTK
Sbjct: 247 VNFSQDKSWRVRYMVANQLYELCEAVGPEPTRTELVPAYVRLLRDNEAEVRIAAAGKVTK 306

Query: 241 FCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSL 300
           FCRILNPE+AIQHILPCVKELSSDSSQHVRSALASVIMGMAP+LGKDATIE LLPIFLSL
Sbjct: 307 FCRILNPEIAIQHILPCVKELSSDSSQHVRSALASVIMGMAPVLGKDATIEHLLPIFLSL 366

Query: 301 LKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS 360
           LKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS
Sbjct: 367 LKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS 426

Query: 361 QLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINN 420
           QLGVGFFDDKLGALCMQWLQDKV+SIRDAAANNLKRLAEEFGPEWAMQHI PQVLEM+NN
Sbjct: 427 QLGVGFFDDKLGALCMQWLQDKVHSIRDAAANNLKRLAEEFGPEWAMQHIVPQVLEMVNN 486

Query: 421 PHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD 480
           PHYLYRMTILRA+SLLAPVMGSEITCS+LLPVV+ ASKDRVPNIKFNVAKVLQSLIPIVD
Sbjct: 487 PHYLYRMTILRAVSLLAPVMGSEITCSKLLPVVMTASKDRVPNIKFNVAKVLQSLIPIVD 546

Query: 481 QSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMMSS 521
           QS+VEKTIRP LVEL+EDPDVDVRFFA QA+QSID+VMMSS
Sbjct: 547 QSVVEKTIRPGLVELSEDPDVDVRFFANQALQSIDNVMMSS 587

The A subunit of protein phosphatase 2A serves as a scaffolding molecule to coordinate the assembly of the catalytic subunit and a variable regulatory B subunit. Involved during developmental process such as seedling and floral developments. Seems to act as a negative regulator of PP2A catalytic activity.
Arabidopsis thaliana (taxid: 3702)

>sp|Q38951|2AAG_ARATH Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A gamma isoform OS=Arabidopsis thaliana GN=PP2AA3 PE=1 SV=2

 Score =  985 bits (2546), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 475/521 (91%), Positives = 503/521 (96%)

Query: 1   MAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWY 60
           MAEELG FI YVGGVE+A+VLLPPLETL TVEETCVR+KAV+SLCRIG+QMRESDLV+ +
Sbjct: 67  MAEELGGFILYVGGVEYAYVLLPPLETLSTVEETCVREKAVDSLCRIGAQMRESDLVEHF 126

Query: 61  IPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASN 120
            PL KRL+AGEWFTARVSACG+FHIAYPSAPD+LKTELRSIY QLCQDDMPMVRR+AA+N
Sbjct: 127 TPLAKRLSAGEWFTARVSACGIFHIAYPSAPDVLKTELRSIYGQLCQDDMPMVRRAAATN 186

Query: 121 LGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVI 180
           LGKFAAT+E AHLKTDIMS+FEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVI
Sbjct: 187 LGKFAATIESAHLKTDIMSMFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVI 246

Query: 181 VNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTK 240
           VNFSQDKSWRVRYMVANQLYELCEAVGPEPTR DLVPAY RLL DNEAEVRIAAAGKVTK
Sbjct: 247 VNFSQDKSWRVRYMVANQLYELCEAVGPEPTRTDLVPAYARLLCDNEAEVRIAAAGKVTK 306

Query: 241 FCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSL 300
           FCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAP+LGKDATIE LLPIFLSL
Sbjct: 307 FCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPVLGKDATIEHLLPIFLSL 366

Query: 301 LKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS 360
           LKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS
Sbjct: 367 LKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS 426

Query: 361 QLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINN 420
           QLGVGFFD+KLGALCMQWLQDKV+SIR+AAANNLKRLAEEFGPEWAMQHI PQVLEMINN
Sbjct: 427 QLGVGFFDEKLGALCMQWLQDKVHSIREAAANNLKRLAEEFGPEWAMQHIVPQVLEMINN 486

Query: 421 PHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD 480
           PHYLYRMTILRA+SLLAPVMGSEITCS+LLP VI ASKDRVPNIKFNVAK++QSLIPIVD
Sbjct: 487 PHYLYRMTILRAVSLLAPVMGSEITCSKLLPAVITASKDRVPNIKFNVAKMMQSLIPIVD 546

Query: 481 QSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMMSS 521
           Q++VE  IRPCLVEL+EDPDVDVR+FA QA+QSID+VMMSS
Sbjct: 547 QAVVENMIRPCLVELSEDPDVDVRYFANQALQSIDNVMMSS 587

The A subunit of protein phosphatase 2A serves as a scaffolding molecule to coordinate the assembly of the catalytic subunit and a variable regulatory B subunit. Involved during developmental process such as seedling and floral developments. Seems to act as a negative regulator of PP2A catalytic activity.

Arabidopsis thaliana (taxid: 3702)

>sp|Q38845|2AAA_ARATH Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform OS=Arabidopsis thaliana GN=PP2AA1 PE=1 SV=1

 Score =  941 bits (2431), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 445/515 (86%), Positives = 489/515 (94%)

Query: 1   MAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWY 60
           MAEELGVFIP+VGG+E AHVLLPPLE+LCTVEETCVR+KAVESLC+IGSQM+E+DLV+ +
Sbjct: 67  MAEELGVFIPFVGGIEFAHVLLPPLESLCTVEETCVREKAVESLCKIGSQMKENDLVESF 126

Query: 61  IPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASN 120
           +PLVKRLA GEWF ARVSACG+FH+AY    D+LKTELR+ Y+QLC+DDMPMVRR+AASN
Sbjct: 127 VPLVKRLAGGEWFAARVSACGIFHVAYQGCTDVLKTELRATYSQLCKDDMPMVRRAAASN 186

Query: 121 LGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVI 180
           LGKFA TVE   L  +IM++F+DLT+DDQDSVRLLAVEGCAALGKLLEPQDCVA ILPVI
Sbjct: 187 LGKFATTVESTFLIAEIMTMFDDLTKDDQDSVRLLAVEGCAALGKLLEPQDCVARILPVI 246

Query: 181 VNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTK 240
           VNFSQDKSWRVRYMVANQLYELCEAVGP+ TR DLVPAYVRLLRDNEAEVRIAAAGKVTK
Sbjct: 247 VNFSQDKSWRVRYMVANQLYELCEAVGPDCTRTDLVPAYVRLLRDNEAEVRIAAAGKVTK 306

Query: 241 FCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSL 300
           FCR+LNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAP+LGKD+TIE LLPIFLSL
Sbjct: 307 FCRLLNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPILGKDSTIEHLLPIFLSL 366

Query: 301 LKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS 360
           LKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY+PLLAS
Sbjct: 367 LKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYVPLLAS 426

Query: 361 QLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINN 420
           QLG+GFFDDKLGALCMQWLQDKVYSIR+AAANNLKRLAEEFGPEWAMQH+ PQVL+M+NN
Sbjct: 427 QLGIGFFDDKLGALCMQWLQDKVYSIREAAANNLKRLAEEFGPEWAMQHLVPQVLDMVNN 486

Query: 421 PHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD 480
           PHYL+RM +LRAISL+APVMGSEITCS+ LPVV+ ASKDRVPNIKFNVAK+LQSLIPIVD
Sbjct: 487 PHYLHRMMVLRAISLMAPVMGSEITCSKFLPVVVEASKDRVPNIKFNVAKLLQSLIPIVD 546

Query: 481 QSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSID 515
           QS+V+KTIR CLV+L+EDPDVDVR+FA QA+ SID
Sbjct: 547 QSVVDKTIRQCLVDLSEDPDVDVRYFANQALNSID 581

The A subunit of protein phosphatase 2A serves as a scaffolding molecule to coordinate the assembly of the catalytic subunit and a variable regulatory B subunit. Seems to act as a positive regulator of PP2A catalytic activity. Confers resistance to phosphatase inhibitors such as okadaic acid and cantharidin. Involved during developmental process such as seedling and floral developments, root gravitropism, and stomatal opening regulation. Involved in the regulation of auxin efflux, especially during basipetal (tips to base) auxin transport in roots, and appears to contribute to the perception of auxin efflux inhibitors such as 1-N-naphthylphthalamic acid (NPA) and to semicarbazone I (substituted phenylsemicarbazone of 2-acetylarylcarboxylic acids) (SCB-I). Modulates the magnitude of ethylene response in the hypocotyl and stem, and functions as a general positive transducer of early ABA signaling.

Arabidopsis thaliana (taxid: 3702)

>sp|P36875|2AAA_PEA Protein phosphatase PP2A regulatory subunit A (Fragment) OS=Pisum sativum PE=2 SV=1

 Score =  723 bits (1866), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/395 (89%), Positives = 377/395 (95%), Gaps = 1/395 (0%)

Query: 128 VEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDK 187
           VE AHLKTDIMS+F+DLTQDDQDS R LAVEGCAALGKLLEPQDC+AHILPVIVNFSQDK
Sbjct: 1   VEAAHLKTDIMSVFDDLTQDDQDSFRFLAVEGCAALGKLLEPQDCLAHILPVIVNFSQDK 60

Query: 188 SWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP 247
           SWRVRYMVANQLYELCEAVGP+ T+ +LVPAYVRLLRDN AEVRIAAAGKV+KF RIL+P
Sbjct: 61  SWRVRYMVANQLYELCEAVGPDSTKTELVPAYVRLLRDNVAEVRIAAAGKVSKFSRILSP 120

Query: 248 ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPD 307
           ELAIQHILPCVKELS+DSSQHVRSALASVIMGMAP+LGKDATIEQLLPIFLSLLKDEFPD
Sbjct: 121 ELAIQHILPCVKELSTDSSQHVRSALASVIMGMAPVLGKDATIEQLLPIFLSLLKDEFPD 180

Query: 308 VRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF 367
           VRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF
Sbjct: 181 VRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF 240

Query: 368 DDKLGALCMQWLQDKVYSIRDAAANNLKRL-AEEFGPEWAMQHITPQVLEMINNPHYLYR 426
           DDKLGAL MQWL+DK YSIR+AAANN+KRL AEEFGPEWAMQHI PQVL+MIN+PHYLYR
Sbjct: 241 DDKLGALIMQWLKDKEYSIRNAAANNVKRLAAEEFGPEWAMQHIIPQVLDMINDPHYLYR 300

Query: 427 MTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEK 486
           MTIL AISLLAPV+GSEIT + LLP+V+NASKDRVPNIKFNVAKVLQSLIPIVD+S+VE 
Sbjct: 301 MTILHAISLLAPVLGSEITSTNLLPLVVNASKDRVPNIKFNVAKVLQSLIPIVDESVVES 360

Query: 487 TIRPCLVELTEDPDVDVRFFATQAIQSIDHVMMSS 521
           TIRPCLVEL+EDPDVDVRFFA+QA+QS D V MSS
Sbjct: 361 TIRPCLVELSEDPDVDVRFFASQALQSSDQVKMSS 395

The PR65 subunit of protein phosphatase 2A serves as a scaffolding molecule to coordinate the assembly of the catalytic subunit and a variable regulatory B subunit.

Pisum sativum (taxid: 3888)

>sp|Q32PI5|2AAA_BOVIN Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform OS=Bos taurus GN=PPP2R1A PE=1 SV=1

 Score =  602 bits (1552), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 296/515 (57%), Positives = 385/515 (74%), Gaps = 4/515 (0%)

Query: 1   MAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWY 60
           +AE+LG F   VGG E+ H LLPPLE+L TVEET VRDKAVESL  I  +   SDL   +
Sbjct: 69  LAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHF 128

Query: 61  IPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASN 120
           +PLVKRLA G+WFT+R SACGLF + YP     +K ELR  +  LC DD PMVRR+AAS 
Sbjct: 129 VPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASK 188

Query: 121 LGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVI 180
           LG+FA  +E  ++K++I+ +F +L  D+QDSVRLLAVE C  + +LL  +D  A ++P +
Sbjct: 189 LGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTL 248

Query: 181 VNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTK 240
              ++DKSWRVRYMVA++  EL +AVGPE T+ DLVPA+  L++D EAEVR AA+ KV +
Sbjct: 249 RQAAEDKSWRVRYMVADKFTELHKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKE 308

Query: 241 FCRILNPE----LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPI 296
           FC  L+ +    + +  ILPC+KEL SD++QHV+SALASVIMG++P+LGKD+TIE LLP+
Sbjct: 309 FCENLSADCRENVIMTQILPCIKELVSDANQHVKSALASVIMGLSPILGKDSTIEHLLPL 368

Query: 297 FLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIP 356
           FL+ LKDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY+P
Sbjct: 369 FLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMP 428

Query: 357 LLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLE 416
           LLA QLGV FFD+KL +LCM WL D VY+IR+AA +NLK+L E+FG EWA   I P+VL 
Sbjct: 429 LLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLA 488

Query: 417 MINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLI 476
           M  +P+YL+RMT L  I++L+ V G +IT   +LP V+  + D V N++FNVAK LQ + 
Sbjct: 489 MSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIG 548

Query: 477 PIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAI 511
           PI+D S ++  ++P L +LT+D DVDV++FA +A+
Sbjct: 549 PILDNSTLQSEVKPVLEKLTQDQDVDVKYFAQEAL 583

The PR65 subunit of protein phosphatase 2A serves as a scaffolding molecule to coordinate the assembly of the catalytic subunit and a variable regulatory B subunit. Required for proper chromosome segregation and for centromeric localization of SGOL1 in mitosis.

Bos taurus (taxid: 9913)

>sp|P30153|2AAA_HUMAN Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform OS=Homo sapiens GN=PPP2R1A PE=1 SV=4

 Score =  601 bits (1550), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 296/515 (57%), Positives = 384/515 (74%), Gaps = 4/515 (0%)

Query: 1   MAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWY 60
           +AE+LG F   VGG E+ H LLPPLE+L TVEET VRDKAVESL  I  +   SDL   +
Sbjct: 69  LAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHF 128

Query: 61  IPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASN 120
           +PLVKRLA G+WFT+R SACGLF + YP     +K ELR  +  LC DD PMVRR+AAS 
Sbjct: 129 VPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASK 188

Query: 121 LGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVI 180
           LG+FA  +E  ++K++I+ +F +L  D+QDSVRLLAVE C  + +LL  +D  A ++P +
Sbjct: 189 LGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTL 248

Query: 181 VNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTK 240
              ++DKSWRVRYMVA++  EL +AVGPE T+ DLVPA+  L++D EAEVR AA+ KV +
Sbjct: 249 RQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKE 308

Query: 241 FCRILNPE----LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPI 296
           FC  L+ +    + +  ILPC+KEL SD++QHV+SALASVIMG++P+LGKD TIE LLP+
Sbjct: 309 FCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPL 368

Query: 297 FLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIP 356
           FL+ LKDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY+P
Sbjct: 369 FLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMP 428

Query: 357 LLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLE 416
           LLA QLGV FFD+KL +LCM WL D VY+IR+AA +NLK+L E+FG EWA   I P+VL 
Sbjct: 429 LLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLA 488

Query: 417 MINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLI 476
           M  +P+YL+RMT L  I++L+ V G +IT   +LP V+  + D V N++FNVAK LQ + 
Sbjct: 489 MSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIG 548

Query: 477 PIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAI 511
           PI+D S ++  ++P L +LT+D DVDV++FA +A+
Sbjct: 549 PILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEAL 583

The PR65 subunit of protein phosphatase 2A serves as a scaffolding molecule to coordinate the assembly of the catalytic subunit and a variable regulatory B subunit. Required for proper chromosome segregation and for centromeric localization of SGOL1 in mitosis.

Homo sapiens (taxid: 9606)

>sp|P54612|2AAA_PIG Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform OS=Sus scrofa GN=PPP2R1A PE=2 SV=2

 Score =  601 bits (1550), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 296/515 (57%), Positives = 384/515 (74%), Gaps = 4/515 (0%)

Query: 1   MAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWY 60
           +AE+LG F   VGG E+ H LLPPLE+L TVEET VRDKAVESL  I  +   SDL   +
Sbjct: 69  LAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHF 128

Query: 61  IPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASN 120
           +PLVKRLA G+WFT+R SACGLF + YP     +K ELR  +  LC DD PMVRR+AAS 
Sbjct: 129 VPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASK 188

Query: 121 LGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVI 180
           LG+FA  +E  ++K++I+ +F +L  D+QDSVRLLAVE C  + +LL  +D  A ++P +
Sbjct: 189 LGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTL 248

Query: 181 VNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTK 240
              ++DKSWRVRYMVA++  EL +AVGPE T+ DLVPA+  L++D EAEVR AA+ KV +
Sbjct: 249 RQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKE 308

Query: 241 FCRILNPE----LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPI 296
           FC  L+ +    + +  ILPC+KEL SD++QHV+SALASVIMG++P+LGKD TIE LLP+
Sbjct: 309 FCENLSADCRENVIMTQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPL 368

Query: 297 FLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIP 356
           FL+ LKDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY+P
Sbjct: 369 FLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMP 428

Query: 357 LLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLE 416
           LLA QLGV FFD+KL +LCM WL D VY+IR+AA +NLK+L E+FG EWA   I P+VL 
Sbjct: 429 LLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLA 488

Query: 417 MINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLI 476
           M  +P+YL+RMT L  I++L+ V G +IT   +LP V+  + D V N++FNVAK LQ + 
Sbjct: 489 MSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIG 548

Query: 477 PIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAI 511
           PI+D S ++  ++P L +LT+D DVDV++FA +A+
Sbjct: 549 PILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEAL 583

The PR65 subunit of protein phosphatase 2A serves as a scaffolding molecule to coordinate the assembly of the catalytic subunit and a variable regulatory B subunit. Required for proper chromosome segregation and for centromeric localization of SGOL1 in mitosis.

Sus scrofa (taxid: 9823)

>sp|Q76MZ3|2AAA_MOUSE Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform OS=Mus musculus GN=Ppp2r1a PE=1 SV=3

 Score =  601 bits (1550), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 296/515 (57%), Positives = 384/515 (74%), Gaps = 4/515 (0%)

Query: 1   MAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWY 60
           +AE+LG F   VGG E+ H LLPPLE+L TVEET VRDKAVESL  I  +   SDL   +
Sbjct: 69  LAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHF 128

Query: 61  IPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASN 120
           +PLVKRLA G+WFT+R SACGLF + YP     +K ELR  +  LC DD PMVRR+AAS 
Sbjct: 129 VPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASK 188

Query: 121 LGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVI 180
           LG+FA  +E  ++K++I+ +F +L  D+QDSVRLLAVE C  + +LL  +D  A ++P +
Sbjct: 189 LGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTL 248

Query: 181 VNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTK 240
              ++DKSWRVRYMVA++  EL +AVGPE T+ DLVPA+  L++D EAEVR AA+ KV +
Sbjct: 249 RQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKE 308

Query: 241 FCRILNPE----LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPI 296
           FC  L+ +    + +  ILPC+KEL SD++QHV+SALASVIMG++P+LGKD TIE LLP+
Sbjct: 309 FCENLSADCRENVIMTQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPL 368

Query: 297 FLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIP 356
           FL+ LKDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY+P
Sbjct: 369 FLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMP 428

Query: 357 LLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLE 416
           LLA QLGV FFD+KL +LCM WL D VY+IR+AA +NLK+L E+FG EWA   I P+VL 
Sbjct: 429 LLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLA 488

Query: 417 MINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLI 476
           M  +P+YL+RMT L  I++L+ V G +IT   +LP V+  + D V N++FNVAK LQ + 
Sbjct: 489 MSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIG 548

Query: 477 PIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAI 511
           PI+D S ++  ++P L +LT+D DVDV++FA +A+
Sbjct: 549 PILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEAL 583

The PR65 subunit of protein phosphatase 2A serves as a scaffolding molecule to coordinate the assembly of the catalytic subunit and a variable regulatory B subunit. Required for proper chromosome segregation and for centromeric localization of SGOL1 in mitosis.

Mus musculus (taxid: 10090)

>sp|Q54QR9|2AAA_DICDI Serine/threonine-protein phosphatase 2A regulatory subunit pppA OS=Dictyostelium discoideum GN=pppA PE=2 SV=1

 Score =  590 bits (1520), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 287/512 (56%), Positives = 385/512 (75%)

Query: 1   MAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWY 60
           ++EELG  I +VGG EHA  LLPPL+ L   EE  VR+KAVESLC+I  ++  S   + +
Sbjct: 71  LSEELGNLIEFVGGAEHAVCLLPPLQILAGAEELVVREKAVESLCKIAKEIPTSSFEESF 130

Query: 61  IPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASN 120
           +PL+  L+  +WFT+R SACGLF ++YP A   +K  LR  +  LC DD PMV+R+AA+N
Sbjct: 131 LPLLFSLSKADWFTSRTSACGLFTVSYPRANAEMKKSLRKTFGGLCHDDTPMVKRAAATN 190

Query: 121 LGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVI 180
           LG FA  +E   +K++I+ +F+ L+ D+QDSVRLL VE CA LG +L  ++ +  ILP I
Sbjct: 191 LGSFAKQIEKESVKSEILPLFQSLSTDEQDSVRLLGVENCALLGSMLTNEENIQFILPTI 250

Query: 181 VNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTK 240
              S DKSWRVRYMVA  L ELCE++G E T+ +L+ A+V+LL+D EAEVR  A+ ++  
Sbjct: 251 KASSLDKSWRVRYMVARLLKELCESMGTEITKTELIGAFVKLLKDTEAEVRTEASLRIAD 310

Query: 241 FCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSL 300
            C +L  E+ I+ ILPCVK+L SDSSQHVR+ALA VIM +AP+ GK+ T+  LL +FL L
Sbjct: 311 VCSLLTKEMNIKTILPCVKDLVSDSSQHVRAALAQVIMSLAPIYGKEDTLTHLLELFLHL 370

Query: 301 LKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS 360
           LKD+FPDVRLNIISKLDQV++VIGI++LSQSLLPAIVELAED  WRVRLAII+YIPLLAS
Sbjct: 371 LKDDFPDVRLNIISKLDQVSKVIGIEMLSQSLLPAIVELAEDHQWRVRLAIIDYIPLLAS 430

Query: 361 QLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINN 420
           QLGV FFD+KLG LCM WL D V+SIR+AA NNLK+L E FG +WA  +I P+VL + ++
Sbjct: 431 QLGVEFFDEKLGNLCMTWLGDPVFSIREAATNNLKKLTEVFGVDWAKNNIIPKVLSLHSH 490

Query: 421 PHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD 480
           P+YLYRMT L +IS L+ V+G ++  S ++P++     D+VPNI+FNVAK  Q++IP++D
Sbjct: 491 PNYLYRMTTLFSISTLSTVVGGDVISSSMVPLLAKMVSDKVPNIRFNVAKTFQTIIPLLD 550

Query: 481 QSMVEKTIRPCLVELTEDPDVDVRFFATQAIQ 512
            ++V+  ++P LV+L ED D DV+F+A+QA+Q
Sbjct: 551 STIVQSRVKPLLVKLHEDTDKDVKFYASQALQ 582

Scaffolding molecule which may coordinate the assembly of the catalytic subunit and a variable regulatory B subunit.

Dictyostelium discoideum (taxid: 44689)

>sp|P54613|2AAB_PIG Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform (Fragment) OS=Sus scrofa GN=PPP2R1B PE=2 SV=1

 Score =  585 bits (1509), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 290/515 (56%), Positives = 381/515 (73%), Gaps = 4/515 (0%)

Query: 1   MAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWY 60
           +AE+LG F   VGG + AH LLPPLE+L TVEET VRDKAVESL +I  +     L   +
Sbjct: 82  LAEQLGNFTGLVGGPDFAHCLLPPLESLATVEETVVRDKAVESLRQISQEHTPVALEAHF 141

Query: 61  IPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASN 120
           +PLVKRLA+G+WFT+R SACGLF + YP A + +K E+R  +  LC DD PMVRR+AAS 
Sbjct: 142 VPLVKRLASGDWFTSRTSACGLFSVCYPRASNAVKAEIRQHFRSLCSDDTPMVRRAAASK 201

Query: 121 LGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVI 180
           LG+FA  +E   +K++I+ +F +L  D+QDSVRLLAVE C ++ +LL   D  A ++P +
Sbjct: 202 LGEFAKVLELDSVKSEIVPLFTNLASDEQDSVRLLAVEACVSIAQLLSQDDLEALVMPTL 261

Query: 181 VNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTK 240
              ++DKSWRVRYMVA++  EL  AVGP+ T  DL+PA+  LL+D EAEVR AAA KV +
Sbjct: 262 RQAAEDKSWRVRYMVADKFSELQRAVGPKITLNDLIPAFQNLLKDCEAEVRAAAAHKVKE 321

Query: 241 FCRILNPE----LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPI 296
            C  L  E    + +  ILPC+KEL SD++QHV+SALASVIMG++ +LGK+ TIE LLP+
Sbjct: 322 LCENLPIEGRETIIMNQILPCIKELVSDTNQHVKSALASVIMGLSTILGKENTIEHLLPL 381

Query: 297 FLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIP 356
           FL+ LKDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY+P
Sbjct: 382 FLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMP 441

Query: 357 LLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLE 416
           LLA QLGV FFD+KL +LCM WL D VY+IR+AA NNL +L ++FG EWA   I P+VL 
Sbjct: 442 LLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATNNLMKLVQKFGTEWAQNTIVPKVLV 501

Query: 417 MINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLI 476
           M N+P+YL+RMT L  I++L+   G EIT  ++LP+V+  + D+V N++FNVAK LQ + 
Sbjct: 502 MANDPNYLHRMTTLFCINVLSEACGQEITTKQMLPIVLKMAGDQVANVRFNVAKSLQKIG 561

Query: 477 PIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAI 511
           PI+D   +++ ++P L +L +D D+DV++FA +AI
Sbjct: 562 PILDTDALQEEVKPVLQKLGQDEDMDVKYFAQEAI 596

The PR65 subunit of protein phosphatase 2A serves as a scaffolding molecule to coordinate the assembly of the catalytic subunit and a variable regulatory B subunit.

Sus scrofa (taxid: 9823)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	521
255576493	587	serine/threonine protein phosphatase 2a	0.915	0.812	0.961	0.0
449434642	587	PREDICTED: serine/threonine-protein phos	0.915	0.812	0.952	0.0
353259711	587	serine/threonine protein phosphatase 2a	0.915	0.812	0.950	0.0
224108518	587	predicted protein [Populus trichocarpa]	0.911	0.809	0.938	0.0
224101693	586	predicted protein [Populus trichocarpa]	0.925	0.822	0.946	0.0
15230896	587	protein phosphatase 2A subunit A2 [Arabi	0.850	0.754	0.934	0.0
343172122	576	protein phosphatase 2A subunit A2, parti	0.913	0.826	0.928	0.0
297818092	587	hypothetical protein ARALYDRAFT_904748 [	0.911	0.809	0.932	0.0
224115920	587	predicted protein [Populus trichocarpa]	0.850	0.754	0.927	0.0
225455902	587	PREDICTED: serine/threonine-protein phos	0.923	0.819	0.932	0.0

>gi|255576493|ref|XP_002529138.1| serine/threonine protein phosphatase 2a regulatory subunit A, putative [Ricinus communis] gi|223531417|gb|EEF33251.1| serine/threonine protein phosphatase 2a regulatory subunit A, putative [Ricinus communis]

 Score = 1034 bits (2673), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 501/521 (96%), Positives = 512/521 (98%)

Query: 1   MAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWY 60
           MAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDW+
Sbjct: 67  MAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWF 126

Query: 61  IPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASN 120
           IPLVKRLAAGEWFTARVSACGLFHIAYPSAPD+LK ELRSIY+QLCQDDMPMVRRSAASN
Sbjct: 127 IPLVKRLAAGEWFTARVSACGLFHIAYPSAPDVLKAELRSIYSQLCQDDMPMVRRSAASN 186

Query: 121 LGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVI 180
           LGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVI
Sbjct: 187 LGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVI 246

Query: 181 VNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTK 240
           VNFSQDKSWRVRYMVANQLYELCEAVGPEPTR DLVPAYVRLLRDNEAEVRIAAAGKVTK
Sbjct: 247 VNFSQDKSWRVRYMVANQLYELCEAVGPEPTRTDLVPAYVRLLRDNEAEVRIAAAGKVTK 306

Query: 241 FCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSL 300
           FCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAP+LGKDATIEQLLPIFLSL
Sbjct: 307 FCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPVLGKDATIEQLLPIFLSL 366

Query: 301 LKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS 360
           LKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS
Sbjct: 367 LKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS 426

Query: 361 QLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINN 420
           QLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAM+HI PQVLEM+ N
Sbjct: 427 QLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMRHIIPQVLEMVTN 486

Query: 421 PHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD 480
           PHYLYRMTILRAISLLAPVMGSEITCS+LLPVV  ASKDRVPNIKFNVAKVLQSLI IVD
Sbjct: 487 PHYLYRMTILRAISLLAPVMGSEITCSKLLPVVATASKDRVPNIKFNVAKVLQSLISIVD 546

Query: 481 QSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMMSS 521
           QS+VEKTIRPCL EL+EDPDVDVRFFA QA+QSID+VMMSS
Sbjct: 547 QSVVEKTIRPCLAELSEDPDVDVRFFANQALQSIDNVMMSS 587

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449434642|ref|XP_004135105.1| PREDICTED: serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform-like [Cucumis sativus] gi|449493464|ref|XP_004159301.1| PREDICTED: serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform-like [Cucumis sativus]

 Score = 1029 bits (2660), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 496/521 (95%), Positives = 514/521 (98%)

Query: 1   MAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWY 60
           MAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDW+
Sbjct: 67  MAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWF 126

Query: 61  IPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASN 120
           IPLVKRLAAGEWFTARVSACGLFHIAYPSAP++LKTELRSIY QLCQDDMPMVRRSAA+N
Sbjct: 127 IPLVKRLAAGEWFTARVSACGLFHIAYPSAPEMLKTELRSIYGQLCQDDMPMVRRSAATN 186

Query: 121 LGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVI 180
           LGKFAAT+EPAHLKTDIM+IFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCV HILPVI
Sbjct: 187 LGKFAATIEPAHLKTDIMTIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVLHILPVI 246

Query: 181 VNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTK 240
           VNFSQDKSWRVRYMVANQLYELCEAVGPEPTR DLVPAYVRLLRDNEAEVRIAAAGKVTK
Sbjct: 247 VNFSQDKSWRVRYMVANQLYELCEAVGPEPTRTDLVPAYVRLLRDNEAEVRIAAAGKVTK 306

Query: 241 FCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSL 300
           FCRIL+PELAIQHILPCVKELSSDSSQHVRSALASVIMGMAP+LGKDATIEQLLPIFLSL
Sbjct: 307 FCRILSPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPVLGKDATIEQLLPIFLSL 366

Query: 301 LKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS 360
           LKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS
Sbjct: 367 LKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS 426

Query: 361 QLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINN 420
           QLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHI PQVL+MINN
Sbjct: 427 QLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHIVPQVLDMINN 486

Query: 421 PHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD 480
           PHYLYRMT+LRA+SLLAPVMGSEITC++LLPVVI++SKDRVPNIKFNVAKVLQSLIPIVD
Sbjct: 487 PHYLYRMTVLRAVSLLAPVMGSEITCTKLLPVVISSSKDRVPNIKFNVAKVLQSLIPIVD 546

Query: 481 QSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMMSS 521
           Q +VEKTIRP LVEL+EDPDVDVRFFA QA+QSIDHVMMSS
Sbjct: 547 QPVVEKTIRPSLVELSEDPDVDVRFFANQALQSIDHVMMSS 587

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|353259711|gb|AEQ75494.1| serine/threonine protein phosphatase 2a regulatory subunit A [Rosa multiflora]

 Score = 1020 bits (2638), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 495/521 (95%), Positives = 509/521 (97%)

Query: 1   MAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWY 60
           MAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRE DLV W+
Sbjct: 67  MAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREGDLVSWF 126

Query: 61  IPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASN 120
           IPLVKRLAAGEWFTARVSACGLFHIAYPSA + LKTELRSIY+QLCQDDMPMVRRSAA+N
Sbjct: 127 IPLVKRLAAGEWFTARVSACGLFHIAYPSASETLKTELRSIYSQLCQDDMPMVRRSAATN 186

Query: 121 LGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVI 180
           LGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCV HILPVI
Sbjct: 187 LGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVQHILPVI 246

Query: 181 VNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTK 240
           VNFSQDKSWRVRYMVANQLYELCEAVGP+PTR DLVPAYVRLLRDNEAEVRIAAAGKVTK
Sbjct: 247 VNFSQDKSWRVRYMVANQLYELCEAVGPDPTRTDLVPAYVRLLRDNEAEVRIAAAGKVTK 306

Query: 241 FCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSL 300
           FCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMA +LGKDATIEQLLPIFLSL
Sbjct: 307 FCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMALVLGKDATIEQLLPIFLSL 366

Query: 301 LKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS 360
           LKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS
Sbjct: 367 LKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS 426

Query: 361 QLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINN 420
           QLGVGFFDDKLG+LCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHI PQVLEMI+N
Sbjct: 427 QLGVGFFDDKLGSLCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHIVPQVLEMIDN 486

Query: 421 PHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD 480
           PHYLYRMTILRAI LLAPVMGSEITCS+LLPVV+ ASKDRVPNIKFNVAKVLQSLIPIVD
Sbjct: 487 PHYLYRMTILRAICLLAPVMGSEITCSKLLPVVVTASKDRVPNIKFNVAKVLQSLIPIVD 546

Query: 481 QSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMMSS 521
            S+VEKTIRP LVEL+EDPDVDVRFFATQA+Q+IDHVMMSS
Sbjct: 547 HSVVEKTIRPTLVELSEDPDVDVRFFATQALQAIDHVMMSS 587

Source: Rosa multiflora

Species: Rosa multiflora

Genus: Rosa

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224108518|ref|XP_002314877.1| predicted protein [Populus trichocarpa] gi|118484366|gb|ABK94060.1| unknown [Populus trichocarpa] gi|222863917|gb|EEF01048.1| predicted protein [Populus trichocarpa]

 Score = 1014 bits (2623), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 489/521 (93%), Positives = 509/521 (97%)

Query: 1   MAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWY 60
           +AEELGVFIPYVGGVE+AHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRE+DLVDW+
Sbjct: 67  LAEELGVFIPYVGGVEYAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRETDLVDWF 126

Query: 61  IPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASN 120
           IPLVKRLAAGEWFT+RVSACGLFHIAYPSAP++LKTELRSIY+QLCQDDMPMVRRSAASN
Sbjct: 127 IPLVKRLAAGEWFTSRVSACGLFHIAYPSAPEMLKTELRSIYSQLCQDDMPMVRRSAASN 186

Query: 121 LGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVI 180
           LGKFAATVE  HLK DI+SIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVI
Sbjct: 187 LGKFAATVESVHLKADILSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVI 246

Query: 181 VNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTK 240
           VNFSQDKSWRVRYMVANQLYELCEAVGPEPTR DLVPAYVRLLRDNEAEVRIAAAGKVTK
Sbjct: 247 VNFSQDKSWRVRYMVANQLYELCEAVGPEPTRTDLVPAYVRLLRDNEAEVRIAAAGKVTK 306

Query: 241 FCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSL 300
           FCRIL+PE AIQHILPCVKELSSDSSQHVRSALASVIMGMAP+LGKDATIEQLLPIFLSL
Sbjct: 307 FCRILSPEHAIQHILPCVKELSSDSSQHVRSALASVIMGMAPVLGKDATIEQLLPIFLSL 366

Query: 301 LKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS 360
           LKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS
Sbjct: 367 LKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS 426

Query: 361 QLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINN 420
           QLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAM+HI PQVLEM  N
Sbjct: 427 QLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMEHIIPQVLEMSTN 486

Query: 421 PHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD 480
           PHYLYRMTI+RA+SLLAPVMGSEITCS+LLPVV+NASKDRV NIKFNVAKVLQSLIPIVD
Sbjct: 487 PHYLYRMTIIRAVSLLAPVMGSEITCSKLLPVVVNASKDRVSNIKFNVAKVLQSLIPIVD 546

Query: 481 QSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMMSS 521
           QS+ EKTIRPCLVEL+EDPDVDVRFFA QA+Q+ID VMMSS
Sbjct: 547 QSVAEKTIRPCLVELSEDPDVDVRFFANQALQTIDSVMMSS 587

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224101693|ref|XP_002312385.1| predicted protein [Populus trichocarpa] gi|222852205|gb|EEE89752.1| predicted protein [Populus trichocarpa]

 Score = 1014 bits (2622), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 492/520 (94%), Positives = 509/520 (97%)

Query: 1   MAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWY 60
           MAEELGVFIP+VGGV++AHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRE+DLV+W+
Sbjct: 67  MAEELGVFIPFVGGVDYAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRETDLVEWF 126

Query: 61  IPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASN 120
           IPLVKRLAAGEWFTARVSACGLFHIAYPSAPD LKTELRSIY+QLCQDDMPMVRRSAASN
Sbjct: 127 IPLVKRLAAGEWFTARVSACGLFHIAYPSAPDTLKTELRSIYSQLCQDDMPMVRRSAASN 186

Query: 121 LGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVI 180
           LGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ+CVAHILPVI
Sbjct: 187 LGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQNCVAHILPVI 246

Query: 181 VNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTK 240
           VNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTK
Sbjct: 247 VNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTK 306

Query: 241 FCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSL 300
           FCRIL+PELAIQHILPCVKELSSDSSQHVRSALASVIMGMAP+LGKDATIEQLLPIFLSL
Sbjct: 307 FCRILSPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPVLGKDATIEQLLPIFLSL 366

Query: 301 LKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS 360
           LKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS
Sbjct: 367 LKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS 426

Query: 361 QLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINN 420
           QLGVGFFD+KLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWA+QHI PQVLEM  N
Sbjct: 427 QLGVGFFDEKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAVQHIIPQVLEMSTN 486

Query: 421 PHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD 480
           PHYLYRMTILRA+SLLAPVMGSEITCS+LLPVVINASKDRVPNIKFN AKVLQSLIPIVD
Sbjct: 487 PHYLYRMTILRAVSLLAPVMGSEITCSKLLPVVINASKDRVPNIKFNAAKVLQSLIPIVD 546

Query: 481 QSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMMS 520
           QS+VEKTI PCL EL EDPDVDVRFFA QA+Q+I  VMMS
Sbjct: 547 QSVVEKTICPCLFELGEDPDVDVRFFANQALQTIASVMMS 586

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15230896|ref|NP_189208.1| protein phosphatase 2A subunit A2 [Arabidopsis thaliana] gi|83287930|sp|Q38950.2|2AAB_ARATH RecName: Full=Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform; Short=AtA beta; Short=PP2A, subunit A, beta isoform gi|7939566|dbj|BAA95767.1| protein phosphotase 2a 65kd regulatory subunit [Arabidopsis thaliana] gi|27311765|gb|AAO00848.1| protein phosphatase 2A 65 kDa regulatory subunit [Arabidopsis thaliana] gi|30725386|gb|AAP37715.1| At3g25800 [Arabidopsis thaliana] gi|332643548|gb|AEE77069.1| protein phosphatase 2A subunit A2 [Arabidopsis thaliana]

 Score = 1010 bits (2611), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 487/521 (93%), Positives = 510/521 (97%)

Query: 1   MAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWY 60
           MAEELGVFIPYVGGVE+AHVLLPPLETL TVEETCVR+KAVESLCR+GSQMRESDLVD +
Sbjct: 67  MAEELGVFIPYVGGVEYAHVLLPPLETLSTVEETCVREKAVESLCRVGSQMRESDLVDHF 126

Query: 61  IPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASN 120
           I LVKRLAAGEWFTARVSACG+FHIAYPSAPD+LKTELRS+YTQLCQDDMPMVRR+AA+N
Sbjct: 127 ISLVKRLAAGEWFTARVSACGVFHIAYPSAPDMLKTELRSLYTQLCQDDMPMVRRAAATN 186

Query: 121 LGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVI 180
           LGKFAATVE AHLKTD+MS+FEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCV HILPVI
Sbjct: 187 LGKFAATVESAHLKTDVMSMFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVQHILPVI 246

Query: 181 VNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTK 240
           VNFSQDKSWRVRYMVANQLYELCEAVGPEPTR +LVPAYVRLLRDNEAEVRIAAAGKVTK
Sbjct: 247 VNFSQDKSWRVRYMVANQLYELCEAVGPEPTRTELVPAYVRLLRDNEAEVRIAAAGKVTK 306

Query: 241 FCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSL 300
           FCRILNPE+AIQHILPCVKELSSDSSQHVRSALASVIMGMAP+LGKDATIE LLPIFLSL
Sbjct: 307 FCRILNPEIAIQHILPCVKELSSDSSQHVRSALASVIMGMAPVLGKDATIEHLLPIFLSL 366

Query: 301 LKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS 360
           LKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS
Sbjct: 367 LKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS 426

Query: 361 QLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINN 420
           QLGVGFFDDKLGALCMQWLQDKV+SIRDAAANNLKRLAEEFGPEWAMQHI PQVLEM+NN
Sbjct: 427 QLGVGFFDDKLGALCMQWLQDKVHSIRDAAANNLKRLAEEFGPEWAMQHIVPQVLEMVNN 486

Query: 421 PHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD 480
           PHYLYRMTILRA+SLLAPVMGSEITCS+LLPVV+ ASKDRVPNIKFNVAKVLQSLIPIVD
Sbjct: 487 PHYLYRMTILRAVSLLAPVMGSEITCSKLLPVVMTASKDRVPNIKFNVAKVLQSLIPIVD 546

Query: 481 QSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMMSS 521
           QS+VEKTIRP LVEL+EDPDVDVRFFA QA+QSID+VMMSS
Sbjct: 547 QSVVEKTIRPGLVELSEDPDVDVRFFANQALQSIDNVMMSS 587

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|343172122|gb|AEL98765.1| protein phosphatase 2A subunit A2, partial [Silene latifolia]

 Score = 1009 bits (2610), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 483/520 (92%), Positives = 509/520 (97%)

Query: 1   MAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWY 60
           MAEELGVF+ YVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQM+E+DLVD++
Sbjct: 57  MAEELGVFLTYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMKETDLVDYF 116

Query: 61  IPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASN 120
           IPLVKRL+AGEWFTARVS+CGLFHIAYPSAPD LKTELRSIY QLCQDDMPMVRRSAA+N
Sbjct: 117 IPLVKRLSAGEWFTARVSSCGLFHIAYPSAPDALKTELRSIYNQLCQDDMPMVRRSAATN 176

Query: 121 LGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVI 180
           LGKFAATVEP HLKTD+M +FEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAH+LPVI
Sbjct: 177 LGKFAATVEPNHLKTDVMGMFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHVLPVI 236

Query: 181 VNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTK 240
           VNFSQDKSWRVRYMVANQLYELCEAVGP+PTR DLVPAYVRLLRDNEAEVRIAAAGKVTK
Sbjct: 237 VNFSQDKSWRVRYMVANQLYELCEAVGPDPTRADLVPAYVRLLRDNEAEVRIAAAGKVTK 296

Query: 241 FCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSL 300
           FCRIL+PELAIQHILPCVK+LSSDSSQHVRSALASVIMGMAP+LGKDATIEQLLPIFLSL
Sbjct: 297 FCRILSPELAIQHILPCVKDLSSDSSQHVRSALASVIMGMAPILGKDATIEQLLPIFLSL 356

Query: 301 LKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS 360
           LKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLL S
Sbjct: 357 LKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLGS 416

Query: 361 QLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINN 420
           QLGVGFFDDKLGALCMQWLQDKVYSIRDAAANN+KRLAEEFGPEWAMQHI PQVLEM+NN
Sbjct: 417 QLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNVKRLAEEFGPEWAMQHIVPQVLEMMNN 476

Query: 421 PHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD 480
           PHYLYRMTIL AISLLAPV+GSEITCS+LLPV++NASKDRVPNIKFNVAKVLQS+IPIVD
Sbjct: 477 PHYLYRMTILHAISLLAPVLGSEITCSKLLPVLVNASKDRVPNIKFNVAKVLQSIIPIVD 536

Query: 481 QSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMMS 520
           Q++VEKTIRPCLVEL EDPDVDVRFFA QA+QSID+VMMS
Sbjct: 537 QTVVEKTIRPCLVELGEDPDVDVRFFANQALQSIDNVMMS 576

Source: Silene latifolia

Species: Silene latifolia

Genus: Silene

Family: Caryophyllaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297818092|ref|XP_002876929.1| hypothetical protein ARALYDRAFT_904748 [Arabidopsis lyrata subsp. lyrata] gi|297322767|gb|EFH53188.1| hypothetical protein ARALYDRAFT_904748 [Arabidopsis lyrata subsp. lyrata]

 Score = 1008 bits (2606), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 486/521 (93%), Positives = 511/521 (98%)

Query: 1   MAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWY 60
           MAEELGVFIPYVGGVE+AHVLLPPLETL +VEETCVR+KAVESLCR+GSQM+ESDLVD +
Sbjct: 67  MAEELGVFIPYVGGVEYAHVLLPPLETLSSVEETCVREKAVESLCRVGSQMKESDLVDHF 126

Query: 61  IPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASN 120
           IPLVKRLAAGEWFTARVSACG+FHIAYPSAPD+LKTELRS+YTQLCQDDMPMVRR+AA+N
Sbjct: 127 IPLVKRLAAGEWFTARVSACGVFHIAYPSAPDMLKTELRSLYTQLCQDDMPMVRRAAATN 186

Query: 121 LGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVI 180
           LGKFAAT+E AHLKTDIMS+F+DLTQDDQDSVRLLAVEGCAALGKLLEPQDCV HILPVI
Sbjct: 187 LGKFAATIESAHLKTDIMSMFDDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVQHILPVI 246

Query: 181 VNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTK 240
           VNFSQDKSWRVRYMVANQLYELCEAVGPEPTR +LVPAYVRLLRDNEAEVRIAAAGKVTK
Sbjct: 247 VNFSQDKSWRVRYMVANQLYELCEAVGPEPTRTELVPAYVRLLRDNEAEVRIAAAGKVTK 306

Query: 241 FCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSL 300
           FCRILNPE+AIQHILPCVKELSSDSSQHVRSALASVIMGMAP+LGKDATIE LLPIFLSL
Sbjct: 307 FCRILNPEIAIQHILPCVKELSSDSSQHVRSALASVIMGMAPVLGKDATIEHLLPIFLSL 366

Query: 301 LKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS 360
           LKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS
Sbjct: 367 LKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS 426

Query: 361 QLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINN 420
           QLGVGFFDDKLGALCMQWLQDKV+SIRDAAANNLKRLAEEFGPEWAMQHI PQVLEMINN
Sbjct: 427 QLGVGFFDDKLGALCMQWLQDKVHSIRDAAANNLKRLAEEFGPEWAMQHIVPQVLEMINN 486

Query: 421 PHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD 480
           PHYLYRMTILRA+SLLAPVMGSEITCS+LLPVV+ ASKDRVPNIKFNVAKVLQSLIPIVD
Sbjct: 487 PHYLYRMTILRAVSLLAPVMGSEITCSKLLPVVMTASKDRVPNIKFNVAKVLQSLIPIVD 546

Query: 481 QSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMMSS 521
           QS+VEKTIRP LVEL+EDPDVDVRFFA QA+QSID+VMMSS
Sbjct: 547 QSVVEKTIRPGLVELSEDPDVDVRFFANQALQSIDNVMMSS 587

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224115920|ref|XP_002332045.1| predicted protein [Populus trichocarpa] gi|222875342|gb|EEF12473.1| predicted protein [Populus trichocarpa]

 Score = 1007 bits (2603), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 483/521 (92%), Positives = 512/521 (98%)

Query: 1   MAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWY 60
           MA+ELGVFIPYVGGVE+A+VLLPPLETLCTVEETCVRDK+VESLCRIG+QM E DLVD +
Sbjct: 67  MADELGVFIPYVGGVEYANVLLPPLETLCTVEETCVRDKSVESLCRIGTQMIEQDLVDHF 126

Query: 61  IPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASN 120
           IPLVKRLAAGEWFTARVS+CGLFHIAYPSAP+ LKTELR++Y+QLCQDDMPMVRRSAA+N
Sbjct: 127 IPLVKRLAAGEWFTARVSSCGLFHIAYPSAPETLKTELRALYSQLCQDDMPMVRRSAATN 186

Query: 121 LGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVI 180
           LGKFAATVEP HLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVI
Sbjct: 187 LGKFAATVEPVHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVI 246

Query: 181 VNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTK 240
           VNFSQDKSWRVRYMVANQLYELCEAVGPEPTR DLVPAYVRLLRDNEAEVRIAAAGKVTK
Sbjct: 247 VNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDLVPAYVRLLRDNEAEVRIAAAGKVTK 306

Query: 241 FCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSL 300
           FCRILNPE+AIQHILPCVK+LS+DSSQHVRSALASVIMGMAP+LGKDATIEQLLPIFLSL
Sbjct: 307 FCRILNPEVAIQHILPCVKDLSTDSSQHVRSALASVIMGMAPVLGKDATIEQLLPIFLSL 366

Query: 301 LKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS 360
           LKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS
Sbjct: 367 LKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS 426

Query: 361 QLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINN 420
           QLGVGFFDDKLGALCMQWL+DKVYSIRDAAANN+KRLAEEFGP+WAMQHI PQVL++INN
Sbjct: 427 QLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLDLINN 486

Query: 421 PHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD 480
           PHYLYRMTIL A+SLL+PVMGSEITCS+LLP+VINASKDRVPNIKFNVAKVLQSLIPIVD
Sbjct: 487 PHYLYRMTILHAVSLLSPVMGSEITCSQLLPIVINASKDRVPNIKFNVAKVLQSLIPIVD 546

Query: 481 QSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMMSS 521
           QS+VEKTIRPCLVEL+EDPDVDVRFFATQA+QS DHVMMS+
Sbjct: 547 QSVVEKTIRPCLVELSEDPDVDVRFFATQALQSSDHVMMST 587

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225455902|ref|XP_002276180.1| PREDICTED: serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform [Vitis vinifera]

 Score = 1006 bits (2602), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 486/521 (93%), Positives = 509/521 (97%)

Query: 1   MAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWY 60
           MAEELGVFIPYVGGVEHA+VLLPPLETLCTVEETCVRDKAVESLCRIG+QMRE DLV+ +
Sbjct: 67  MAEELGVFIPYVGGVEHANVLLPPLETLCTVEETCVRDKAVESLCRIGAQMREPDLVESF 126

Query: 61  IPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASN 120
           IPLVKRLAAGEWFTARVS+CGLFHIAYPSAP+ LKTELR+IY+QLCQDDMPMVRRSAASN
Sbjct: 127 IPLVKRLAAGEWFTARVSSCGLFHIAYPSAPETLKTELRAIYSQLCQDDMPMVRRSAASN 186

Query: 121 LGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVI 180
           LGKFAATVE AHLK DIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVI
Sbjct: 187 LGKFAATVEAAHLKADIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVI 246

Query: 181 VNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTK 240
           VNFSQDKSWRVRYMVANQLYELCEAVGPEPTR DLVPAYVRLLRDNEAEVRIAAAGKVTK
Sbjct: 247 VNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDLVPAYVRLLRDNEAEVRIAAAGKVTK 306

Query: 241 FCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSL 300
           FCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAP+LGKDATI+QLLPIFLSL
Sbjct: 307 FCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPVLGKDATIDQLLPIFLSL 366

Query: 301 LKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS 360
           LKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS
Sbjct: 367 LKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS 426

Query: 361 QLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINN 420
           QLGVGFFDDKLGALCMQWL+DKVYSIRDAAANN+KRLAEEFGP+WAMQHI PQVL+MINN
Sbjct: 427 QLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIIPQVLDMINN 486

Query: 421 PHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD 480
           PHYLYRMTIL AISLLAPVMG EITCS+LLPVVINA+KDRVPNIKFNVAKVLQSL PIVD
Sbjct: 487 PHYLYRMTILHAISLLAPVMGPEITCSKLLPVVINAAKDRVPNIKFNVAKVLQSLTPIVD 546

Query: 481 QSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMMSS 521
           QS+V+KTIRPCLVEL+EDPDVDVRFFA+QA+Q+ D +MMSS
Sbjct: 547 QSVVDKTIRPCLVELSEDPDVDVRFFASQALQASDQIMMSS 587

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	521
TAIR|locus:2085994	587	PP2AA2 "protein phosphatase 2A	1.0	0.887	0.934	7e-260
TAIR|locus:2205354	587	PP2AA3 "AT1G13320" [Arabidopsi	1.0	0.887	0.911	7.6e-254
TAIR|locus:2031165	588	RCN1 "AT1G25490" [Arabidopsis	0.988	0.875	0.864	1.7e-242
UNIPROTKB|A5D973	589	PPP2R1A "Alpha isoform of regu	0.980	0.867	0.574	1.1e-153
UNIPROTKB|Q32PI5	589	PPP2R1A "Serine/threonine-prot	0.980	0.867	0.574	1.1e-153
UNIPROTKB|P30153	589	PPP2R1A "Serine/threonine-prot	0.980	0.867	0.574	1.7e-153
UNIPROTKB|F1PX75	589	PPP2R1A "Uncharacterized prote	0.980	0.867	0.574	2.2e-153
UNIPROTKB|P54612	589	PPP2R1A "Serine/threonine-prot	0.980	0.867	0.574	2.2e-153
MGI|MGI:1926334	589	Ppp2r1a "protein phosphatase 2	0.980	0.867	0.574	2.2e-153
RGD|620907	589	Ppp2r1a "protein phosphatase 2	0.980	0.867	0.574	2.2e-153

TAIR|locus:2085994 PP2AA2 "protein phosphatase 2A subunit A2" [Arabidopsis thaliana (taxid:3702)]

 Score = 2501 (885.5 bits), Expect = 7.0e-260, P = 7.0e-260
 Identities = 487/521 (93%), Positives = 510/521 (97%)

Query:     1 MAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWY 60
             MAEELGVFIPYVGGVE+AHVLLPPLETL TVEETCVR+KAVESLCR+GSQMRESDLVD +
Sbjct:    67 MAEELGVFIPYVGGVEYAHVLLPPLETLSTVEETCVREKAVESLCRVGSQMRESDLVDHF 126

Query:    61 IPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASN 120
             I LVKRLAAGEWFTARVSACG+FHIAYPSAPD+LKTELRS+YTQLCQDDMPMVRR+AA+N
Sbjct:   127 ISLVKRLAAGEWFTARVSACGVFHIAYPSAPDMLKTELRSLYTQLCQDDMPMVRRAAATN 186

Query:   121 LGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVI 180
             LGKFAATVE AHLKTD+MS+FEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCV HILPVI
Sbjct:   187 LGKFAATVESAHLKTDVMSMFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVQHILPVI 246

Query:   181 VNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTK 240
             VNFSQDKSWRVRYMVANQLYELCEAVGPEPTR +LVPAYVRLLRDNEAEVRIAAAGKVTK
Sbjct:   247 VNFSQDKSWRVRYMVANQLYELCEAVGPEPTRTELVPAYVRLLRDNEAEVRIAAAGKVTK 306

Query:   241 FCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSL 300
             FCRILNPE+AIQHILPCVKELSSDSSQHVRSALASVIMGMAP+LGKDATIE LLPIFLSL
Sbjct:   307 FCRILNPEIAIQHILPCVKELSSDSSQHVRSALASVIMGMAPVLGKDATIEHLLPIFLSL 366

Query:   301 LKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS 360
             LKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS
Sbjct:   367 LKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS 426

Query:   361 QLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINN 420
             QLGVGFFDDKLGALCMQWLQDKV+SIRDAAANNLKRLAEEFGPEWAMQHI PQVLEM+NN
Sbjct:   427 QLGVGFFDDKLGALCMQWLQDKVHSIRDAAANNLKRLAEEFGPEWAMQHIVPQVLEMVNN 486

Query:   421 PHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD 480
             PHYLYRMTILRA+SLLAPVMGSEITCS+LLPVV+ ASKDRVPNIKFNVAKVLQSLIPIVD
Sbjct:   487 PHYLYRMTILRAVSLLAPVMGSEITCSKLLPVVMTASKDRVPNIKFNVAKVLQSLIPIVD 546

Query:   481 QSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMMSS 521
             QS+VEKTIRP LVEL+EDPDVDVRFFA QA+QSID+VMMSS
Sbjct:   547 QSVVEKTIRPGLVELSEDPDVDVRFFANQALQSIDNVMMSS 587

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0000902 "cell morphogenesis" evidence=RCA

GO:0016049 "cell growth" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=ISS

GO:0042325 "regulation of phosphorylation" evidence=ISS

TAIR|locus:2205354 PP2AA3 "AT1G13320" [Arabidopsis thaliana (taxid:3702)]

 Score = 2444 (865.4 bits), Expect = 7.6e-254, P = 7.6e-254
 Identities = 475/521 (91%), Positives = 503/521 (96%)

Query:     1 MAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWY 60
             MAEELG FI YVGGVE+A+VLLPPLETL TVEETCVR+KAV+SLCRIG+QMRESDLV+ +
Sbjct:    67 MAEELGGFILYVGGVEYAYVLLPPLETLSTVEETCVREKAVDSLCRIGAQMRESDLVEHF 126

Query:    61 IPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASN 120
              PL KRL+AGEWFTARVSACG+FHIAYPSAPD+LKTELRSIY QLCQDDMPMVRR+AA+N
Sbjct:   127 TPLAKRLSAGEWFTARVSACGIFHIAYPSAPDVLKTELRSIYGQLCQDDMPMVRRAAATN 186

Query:   121 LGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVI 180
             LGKFAAT+E AHLKTDIMS+FEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVI
Sbjct:   187 LGKFAATIESAHLKTDIMSMFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVI 246

Query:   181 VNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTK 240
             VNFSQDKSWRVRYMVANQLYELCEAVGPEPTR DLVPAY RLL DNEAEVRIAAAGKVTK
Sbjct:   247 VNFSQDKSWRVRYMVANQLYELCEAVGPEPTRTDLVPAYARLLCDNEAEVRIAAAGKVTK 306

Query:   241 FCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSL 300
             FCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAP+LGKDATIE LLPIFLSL
Sbjct:   307 FCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPVLGKDATIEHLLPIFLSL 366

Query:   301 LKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS 360
             LKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS
Sbjct:   367 LKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS 426

Query:   361 QLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINN 420
             QLGVGFFD+KLGALCMQWLQDKV+SIR+AAANNLKRLAEEFGPEWAMQHI PQVLEMINN
Sbjct:   427 QLGVGFFDEKLGALCMQWLQDKVHSIREAAANNLKRLAEEFGPEWAMQHIVPQVLEMINN 486

Query:   421 PHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD 480
             PHYLYRMTILRA+SLLAPVMGSEITCS+LLP VI ASKDRVPNIKFNVAK++QSLIPIVD
Sbjct:   487 PHYLYRMTILRAVSLLAPVMGSEITCSKLLPAVITASKDRVPNIKFNVAKMMQSLIPIVD 546

Query:   481 QSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMMSS 521
             Q++VE  IRPCLVEL+EDPDVDVR+FA QA+QSID+VMMSS
Sbjct:   547 QAVVENMIRPCLVELSEDPDVDVRYFANQALQSIDNVMMSS 587

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=ISS

GO:0005618 "cell wall" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0000159 "protein phosphatase type 2A complex" evidence=TAS

GO:0042325 "regulation of phosphorylation" evidence=ISS

TAIR|locus:2031165 RCN1 "AT1G25490" [Arabidopsis thaliana (taxid:3702)]

 Score = 2337 (827.7 bits), Expect = 1.7e-242, P = 1.7e-242
 Identities = 445/515 (86%), Positives = 489/515 (94%)

Query:     1 MAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWY 60
             MAEELGVFIP+VGG+E AHVLLPPLE+LCTVEETCVR+KAVESLC+IGSQM+E+DLV+ +
Sbjct:    67 MAEELGVFIPFVGGIEFAHVLLPPLESLCTVEETCVREKAVESLCKIGSQMKENDLVESF 126

Query:    61 IPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASN 120
             +PLVKRLA GEWF ARVSACG+FH+AY    D+LKTELR+ Y+QLC+DDMPMVRR+AASN
Sbjct:   127 VPLVKRLAGGEWFAARVSACGIFHVAYQGCTDVLKTELRATYSQLCKDDMPMVRRAAASN 186

Query:   121 LGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVI 180
             LGKFA TVE   L  +IM++F+DLT+DDQDSVRLLAVEGCAALGKLLEPQDCVA ILPVI
Sbjct:   187 LGKFATTVESTFLIAEIMTMFDDLTKDDQDSVRLLAVEGCAALGKLLEPQDCVARILPVI 246

Query:   181 VNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTK 240
             VNFSQDKSWRVRYMVANQLYELCEAVGP+ TR DLVPAYVRLLRDNEAEVRIAAAGKVTK
Sbjct:   247 VNFSQDKSWRVRYMVANQLYELCEAVGPDCTRTDLVPAYVRLLRDNEAEVRIAAAGKVTK 306

Query:   241 FCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSL 300
             FCR+LNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAP+LGKD+TIE LLPIFLSL
Sbjct:   307 FCRLLNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPILGKDSTIEHLLPIFLSL 366

Query:   301 LKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS 360
             LKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY+PLLAS
Sbjct:   367 LKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYVPLLAS 426

Query:   361 QLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINN 420
             QLG+GFFDDKLGALCMQWLQDKVYSIR+AAANNLKRLAEEFGPEWAMQH+ PQVL+M+NN
Sbjct:   427 QLGIGFFDDKLGALCMQWLQDKVYSIREAAANNLKRLAEEFGPEWAMQHLVPQVLDMVNN 486

Query:   421 PHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD 480
             PHYL+RM +LRAISL+APVMGSEITCS+ LPVV+ ASKDRVPNIKFNVAK+LQSLIPIVD
Sbjct:   487 PHYLHRMMVLRAISLMAPVMGSEITCSKFLPVVVEASKDRVPNIKFNVAKLLQSLIPIVD 546

Query:   481 QSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSID 515
             QS+V+KTIR CLV+L+EDPDVDVR+FA QA+ SID
Sbjct:   547 QSVVDKTIRQCLVDLSEDPDVDVRYFANQALNSID 581

GO:0009723 "response to ethylene stimulus" evidence=IMP

GO:0009926 "auxin polar transport" evidence=RCA;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009738 "abscisic acid mediated signaling pathway" evidence=TAS

GO:0009789 "positive regulation of abscisic acid mediated signaling pathway" evidence=IMP

GO:0010119 "regulation of stomatal movement" evidence=IMP

GO:0005618 "cell wall" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0006007 "glucose catabolic process" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0008361 "regulation of cell size" evidence=RCA

GO:0009637 "response to blue light" evidence=RCA

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009853 "photorespiration" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048364 "root development" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

GO:0080129 "proteasome core complex assembly" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=IMP

GO:0000159 "protein phosphatase type 2A complex" evidence=TAS

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=IGI;ISS

UNIPROTKB|A5D973 PPP2R1A "Alpha isoform of regulatory subunit A, protein phosphatase 2" [Bos taurus (taxid:9913)]

 Score = 1499 (532.7 bits), Expect = 1.1e-153, P = 1.1e-153
 Identities = 296/515 (57%), Positives = 385/515 (74%)

Query:     1 MAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWY 60
             +AE+LG F   VGG E+ H LLPPLE+L TVEET VRDKAVESL  I  +   SDL   +
Sbjct:    69 LAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHF 128

Query:    61 IPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASN 120
             +PLVKRLA G+WFT+R SACGLF + YP     +K ELR  +  LC DD PMVRR+AAS 
Sbjct:   129 VPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASK 188

Query:   121 LGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVI 180
             LG+FA  +E  ++K++I+ +F +L  D+QDSVRLLAVE C  + +LL  +D  A ++P +
Sbjct:   189 LGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTL 248

Query:   181 VNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTK 240
                ++DKSWRVRYMVA++  EL +AVGPE T+ DLVPA+  L++D EAEVR AA+ KV +
Sbjct:   249 RQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKE 308

Query:   241 FCRILNPE----LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPI 296
             FC  L+ +    + +  ILPC+KEL SD++QHV+SALASVIMG++P+LGKD+TIE LLP+
Sbjct:   309 FCENLSADCRENVIMTQILPCIKELVSDANQHVKSALASVIMGLSPILGKDSTIEHLLPL 368

Query:   297 FLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIP 356
             FL+ LKDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY+P
Sbjct:   369 FLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMP 428

Query:   357 LLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLE 416
             LLA QLGV FFD+KL +LCM WL D VY+IR+AA +NLK+L E+FG EWA   I P+VL 
Sbjct:   429 LLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLA 488

Query:   417 MINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLI 476
             M  +P+YL+RMT L  I++L+ V G +IT   +LP V+  + D V N++FNVAK LQ + 
Sbjct:   489 MSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIG 548

Query:   477 PIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAI 511
             PI+D S ++  ++P L +LT+D DVDV++FA +A+
Sbjct:   549 PILDNSTLQSEVKPVLEKLTQDQDVDVKYFAQEAL 583

GO:0070262 "peptidyl-serine dephosphorylation" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0042981 "regulation of apoptotic process" evidence=IEA

GO:0007059 "chromosome segregation" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0004722 "protein serine/threonine phosphatase activity" evidence=IEA

GO:0003823 "antigen binding" evidence=IEA

GO:0000775 "chromosome, centromeric region" evidence=IEA

GO:0000159 "protein phosphatase type 2A complex" evidence=IEA

UNIPROTKB|Q32PI5 PPP2R1A "Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform" [Bos taurus (taxid:9913)]

 Score = 1499 (532.7 bits), Expect = 1.1e-153, P = 1.1e-153
 Identities = 296/515 (57%), Positives = 385/515 (74%)

Query:     1 MAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWY 60
             +AE+LG F   VGG E+ H LLPPLE+L TVEET VRDKAVESL  I  +   SDL   +
Sbjct:    69 LAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHF 128

Query:    61 IPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASN 120
             +PLVKRLA G+WFT+R SACGLF + YP     +K ELR  +  LC DD PMVRR+AAS 
Sbjct:   129 VPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASK 188

Query:   121 LGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVI 180
             LG+FA  +E  ++K++I+ +F +L  D+QDSVRLLAVE C  + +LL  +D  A ++P +
Sbjct:   189 LGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTL 248

Query:   181 VNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTK 240
                ++DKSWRVRYMVA++  EL +AVGPE T+ DLVPA+  L++D EAEVR AA+ KV +
Sbjct:   249 RQAAEDKSWRVRYMVADKFTELHKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKE 308

Query:   241 FCRILNPE----LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPI 296
             FC  L+ +    + +  ILPC+KEL SD++QHV+SALASVIMG++P+LGKD+TIE LLP+
Sbjct:   309 FCENLSADCRENVIMTQILPCIKELVSDANQHVKSALASVIMGLSPILGKDSTIEHLLPL 368

Query:   297 FLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIP 356
             FL+ LKDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY+P
Sbjct:   369 FLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMP 428

Query:   357 LLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLE 416
             LLA QLGV FFD+KL +LCM WL D VY+IR+AA +NLK+L E+FG EWA   I P+VL 
Sbjct:   429 LLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLA 488

Query:   417 MINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLI 476
             M  +P+YL+RMT L  I++L+ V G +IT   +LP V+  + D V N++FNVAK LQ + 
Sbjct:   489 MSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIG 548

Query:   477 PIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAI 511
             PI+D S ++  ++P L +LT+D DVDV++FA +A+
Sbjct:   549 PILDNSTLQSEVKPVLEKLTQDQDVDVKYFAQEAL 583

GO:0005737 "cytoplasm" evidence=IDA

GO:0000775 "chromosome, centromeric region" evidence=IEA

GO:0007059 "chromosome segregation" evidence=IEA

UNIPROTKB|P30153 PPP2R1A "Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform" [Homo sapiens (taxid:9606)]

 Score = 1497 (532.0 bits), Expect = 1.7e-153, P = 1.7e-153
 Identities = 296/515 (57%), Positives = 384/515 (74%)

Query:     1 MAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWY 60
             +AE+LG F   VGG E+ H LLPPLE+L TVEET VRDKAVESL  I  +   SDL   +
Sbjct:    69 LAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHF 128

Query:    61 IPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASN 120
             +PLVKRLA G+WFT+R SACGLF + YP     +K ELR  +  LC DD PMVRR+AAS 
Sbjct:   129 VPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASK 188

Query:   121 LGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVI 180
             LG+FA  +E  ++K++I+ +F +L  D+QDSVRLLAVE C  + +LL  +D  A ++P +
Sbjct:   189 LGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTL 248

Query:   181 VNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTK 240
                ++DKSWRVRYMVA++  EL +AVGPE T+ DLVPA+  L++D EAEVR AA+ KV +
Sbjct:   249 RQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKE 308

Query:   241 FCRILNPE----LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPI 296
             FC  L+ +    + +  ILPC+KEL SD++QHV+SALASVIMG++P+LGKD TIE LLP+
Sbjct:   309 FCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPL 368

Query:   297 FLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIP 356
             FL+ LKDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY+P
Sbjct:   369 FLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMP 428

Query:   357 LLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLE 416
             LLA QLGV FFD+KL +LCM WL D VY+IR+AA +NLK+L E+FG EWA   I P+VL 
Sbjct:   429 LLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLA 488

Query:   417 MINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLI 476
             M  +P+YL+RMT L  I++L+ V G +IT   +LP V+  + D V N++FNVAK LQ + 
Sbjct:   489 MSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIG 548

Query:   477 PIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAI 511
             PI+D S ++  ++P L +LT+D DVDV++FA +A+
Sbjct:   549 PILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEAL 583

GO:0004722 "protein serine/threonine phosphatase activity" evidence=IEA

GO:0070262 "peptidyl-serine dephosphorylation" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IPI

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=TAS

GO:0006470 "protein dephosphorylation" evidence=TAS

GO:0015630 "microtubule cytoskeleton" evidence=NAS

GO:0005634 "nucleus" evidence=NAS

GO:0005829 "cytosol" evidence=TAS

GO:0005739 "mitochondrion" evidence=NAS

GO:0016020 "membrane" evidence=NAS

GO:0010033 "response to organic substance" evidence=NAS

GO:0006672 "ceramide metabolic process" evidence=NAS

GO:0006917 "induction of apoptosis" evidence=TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=NAS

GO:0008380 "RNA splicing" evidence=NAS

GO:0006275 "regulation of DNA replication" evidence=NAS

GO:0045595 "regulation of cell differentiation" evidence=NAS

GO:0030111 "regulation of Wnt receptor signaling pathway" evidence=NAS

GO:0000188 "inactivation of MAPK activity" evidence=NAS

GO:0042518 "negative regulation of tyrosine phosphorylation of Stat3 protein" evidence=NAS

GO:0030155 "regulation of cell adhesion" evidence=NAS

GO:0006461 "protein complex assembly" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0003823 "antigen binding" evidence=IPI

GO:0000159 "protein phosphatase type 2A complex" evidence=IDA;TAS

GO:0019932 "second-messenger-mediated signaling" evidence=NAS

GO:0040008 "regulation of growth" evidence=NAS

GO:0030308 "negative regulation of cell growth" evidence=NAS

GO:0007059 "chromosome segregation" evidence=IDA

GO:0000775 "chromosome, centromeric region" evidence=IDA

GO:0000086 "G2/M transition of mitotic cell cycle" evidence=TAS

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0008543 "fibroblast growth factor receptor signaling pathway" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

UNIPROTKB|F1PX75 PPP2R1A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 1496 (531.7 bits), Expect = 2.2e-153, P = 2.2e-153
 Identities = 296/515 (57%), Positives = 384/515 (74%)

Query:     1 MAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWY 60
             +AE+LG F   VGG E+ H LLPPLE+L TVEET VRDKAVESL  I  +   SDL   +
Sbjct:    69 LAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHF 128

Query:    61 IPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASN 120
             +PLVKRLA G+WFT+R SACGLF + YP     +K ELR  +  LC DD PMVRR+AAS 
Sbjct:   129 VPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASK 188

Query:   121 LGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVI 180
             LG+FA  +E  ++K++I+ +F +L  D+QDSVRLLAVE C  + +LL  +D  A ++P +
Sbjct:   189 LGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTL 248

Query:   181 VNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTK 240
                ++DKSWRVRYMVA++  EL +AVGPE T+ DLVPA+  L++D EAEVR AA+ KV +
Sbjct:   249 RQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKE 308

Query:   241 FCRILNPE----LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPI 296
             FC  L+ +    + +  ILPC+KEL SD++QHV+SALASVIMG++P+LGKD TIE LLP+
Sbjct:   309 FCENLSADCRENVIMTQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPL 368

Query:   297 FLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIP 356
             FL+ LKDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY+P
Sbjct:   369 FLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMP 428

Query:   357 LLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLE 416
             LLA QLGV FFD+KL +LCM WL D VY+IR+AA +NLK+L E+FG EWA   I P+VL 
Sbjct:   429 LLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLA 488

Query:   417 MINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLI 476
             M  +P+YL+RMT L  I++L+ V G +IT   +LP V+  + D V N++FNVAK LQ + 
Sbjct:   489 MSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIG 548

Query:   477 PIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAI 511
             PI+D S ++  ++P L +LT+D DVDV++FA +A+
Sbjct:   549 PILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEAL 583

GO:0070262 "peptidyl-serine dephosphorylation" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0042981 "regulation of apoptotic process" evidence=IEA

GO:0007059 "chromosome segregation" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0004722 "protein serine/threonine phosphatase activity" evidence=IEA

GO:0003823 "antigen binding" evidence=IEA

GO:0000775 "chromosome, centromeric region" evidence=IEA

GO:0000159 "protein phosphatase type 2A complex" evidence=IEA

UNIPROTKB|P54612 PPP2R1A "Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform" [Sus scrofa (taxid:9823)]

 Score = 1496 (531.7 bits), Expect = 2.2e-153, P = 2.2e-153
 Identities = 296/515 (57%), Positives = 384/515 (74%)

Query:     1 MAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWY 60
             +AE+LG F   VGG E+ H LLPPLE+L TVEET VRDKAVESL  I  +   SDL   +
Sbjct:    69 LAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHF 128

Query:    61 IPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASN 120
             +PLVKRLA G+WFT+R SACGLF + YP     +K ELR  +  LC DD PMVRR+AAS 
Sbjct:   129 VPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASK 188

Query:   121 LGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVI 180
             LG+FA  +E  ++K++I+ +F +L  D+QDSVRLLAVE C  + +LL  +D  A ++P +
Sbjct:   189 LGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTL 248

Query:   181 VNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTK 240
                ++DKSWRVRYMVA++  EL +AVGPE T+ DLVPA+  L++D EAEVR AA+ KV +
Sbjct:   249 RQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKE 308

Query:   241 FCRILNPE----LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPI 296
             FC  L+ +    + +  ILPC+KEL SD++QHV+SALASVIMG++P+LGKD TIE LLP+
Sbjct:   309 FCENLSADCRENVIMTQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPL 368

Query:   297 FLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIP 356
             FL+ LKDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY+P
Sbjct:   369 FLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMP 428

Query:   357 LLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLE 416
             LLA QLGV FFD+KL +LCM WL D VY+IR+AA +NLK+L E+FG EWA   I P+VL 
Sbjct:   429 LLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLA 488

Query:   417 MINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLI 476
             M  +P+YL+RMT L  I++L+ V G +IT   +LP V+  + D V N++FNVAK LQ + 
Sbjct:   489 MSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIG 548

Query:   477 PIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAI 511
             PI+D S ++  ++P L +LT+D DVDV++FA +A+
Sbjct:   549 PILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEAL 583

GO:0000775 "chromosome, centromeric region" evidence=ISS

GO:0007059 "chromosome segregation" evidence=ISS

GO:0070262 "peptidyl-serine dephosphorylation" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0042981 "regulation of apoptotic process" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0004722 "protein serine/threonine phosphatase activity" evidence=IEA

GO:0003823 "antigen binding" evidence=IEA

GO:0000159 "protein phosphatase type 2A complex" evidence=IEA

MGI|MGI:1926334 Ppp2r1a "protein phosphatase 2 (formerly 2A), regulatory subunit A (PR 65), alpha isoform" [Mus musculus (taxid:10090)]

 Score = 1496 (531.7 bits), Expect = 2.2e-153, P = 2.2e-153
 Identities = 296/515 (57%), Positives = 384/515 (74%)

Query:     1 MAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWY 60
             +AE+LG F   VGG E+ H LLPPLE+L TVEET VRDKAVESL  I  +   SDL   +
Sbjct:    69 LAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHF 128

Query:    61 IPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASN 120
             +PLVKRLA G+WFT+R SACGLF + YP     +K ELR  +  LC DD PMVRR+AAS 
Sbjct:   129 VPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASK 188

Query:   121 LGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVI 180
             LG+FA  +E  ++K++I+ +F +L  D+QDSVRLLAVE C  + +LL  +D  A ++P +
Sbjct:   189 LGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTL 248

Query:   181 VNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTK 240
                ++DKSWRVRYMVA++  EL +AVGPE T+ DLVPA+  L++D EAEVR AA+ KV +
Sbjct:   249 RQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKE 308

Query:   241 FCRILNPE----LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPI 296
             FC  L+ +    + +  ILPC+KEL SD++QHV+SALASVIMG++P+LGKD TIE LLP+
Sbjct:   309 FCENLSADCRENVIMTQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPL 368

Query:   297 FLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIP 356
             FL+ LKDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY+P
Sbjct:   369 FLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMP 428

Query:   357 LLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLE 416
             LLA QLGV FFD+KL +LCM WL D VY+IR+AA +NLK+L E+FG EWA   I P+VL 
Sbjct:   429 LLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLA 488

Query:   417 MINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLI 476
             M  +P+YL+RMT L  I++L+ V G +IT   +LP V+  + D V N++FNVAK LQ + 
Sbjct:   489 MSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIG 548

Query:   477 PIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAI 511
             PI+D S ++  ++P L +LT+D DVDV++FA +A+
Sbjct:   549 PILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEAL 583

GO:0000159 "protein phosphatase type 2A complex" evidence=ISO;IDA

GO:0000775 "chromosome, centromeric region" evidence=ISO

GO:0003823 "antigen binding" evidence=ISO

GO:0004722 "protein serine/threonine phosphatase activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005694 "chromosome" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0007059 "chromosome segregation" evidence=ISO

GO:0042981 "regulation of apoptotic process" evidence=IMP

GO:0046982 "protein heterodimerization activity" evidence=ISO

GO:0070262 "peptidyl-serine dephosphorylation" evidence=IDA

RGD|620907 Ppp2r1a "protein phosphatase 2, regulatory subunit A, alpha" [Rattus norvegicus (taxid:10116)]

 Score = 1496 (531.7 bits), Expect = 2.2e-153, P = 2.2e-153
 Identities = 296/515 (57%), Positives = 384/515 (74%)

Query:     1 MAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWY 60
             +AE+LG F   VGG E+ H LLPPLE+L TVEET VRDKAVESL  I  +   SDL   +
Sbjct:    69 LAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHF 128

Query:    61 IPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASN 120
             +PLVKRLA G+WFT+R SACGLF + YP     +K ELR  +  LC DD PMVRR+AAS 
Sbjct:   129 VPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASK 188

Query:   121 LGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVI 180
             LG+FA  +E  ++K++I+ +F +L  D+QDSVRLLAVE C  + +LL  +D  A ++P +
Sbjct:   189 LGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTL 248

Query:   181 VNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTK 240
                ++DKSWRVRYMVA++  EL +AVGPE T+ DLVPA+  L++D EAEVR AA+ KV +
Sbjct:   249 RQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKE 308

Query:   241 FCRILNPE----LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPI 296
             FC  L+ +    + +  ILPC+KEL SD++QHV+SALASVIMG++P+LGKD TIE LLP+
Sbjct:   309 FCENLSADCRENVIMTQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPL 368

Query:   297 FLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIP 356
             FL+ LKDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY+P
Sbjct:   369 FLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMP 428

Query:   357 LLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLE 416
             LLA QLGV FFD+KL +LCM WL D VY+IR+AA +NLK+L E+FG EWA   I P+VL 
Sbjct:   429 LLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLA 488

Query:   417 MINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLI 476
             M  +P+YL+RMT L  I++L+ V G +IT   +LP V+  + D V N++FNVAK LQ + 
Sbjct:   489 MSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIG 548

Query:   477 PIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAI 511
             PI+D S ++  ++P L +LT+D DVDV++FA +A+
Sbjct:   549 PILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEAL 583

GO:0000159 "protein phosphatase type 2A complex" evidence=IEA;ISO

GO:0000775 "chromosome, centromeric region" evidence=IEA;ISO

GO:0003823 "antigen binding" evidence=IEA;ISO

GO:0004722 "protein serine/threonine phosphatase activity" evidence=IEA;ISO

GO:0005829 "cytosol" evidence=IEA;ISO

GO:0007059 "chromosome segregation" evidence=IEA;ISO

GO:0042981 "regulation of apoptotic process" evidence=IEA;ISO

GO:0046982 "protein heterodimerization activity" evidence=IEA;ISO

GO:0070262 "peptidyl-serine dephosphorylation" evidence=IEA;ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P36179	2AAA_DROME	No assigned EC number	0.5518	0.9692	0.8544	yes	no
Q54QR9	2AAA_DICDI	No assigned EC number	0.5605	0.9673	0.8630	yes	no
P36875	2AAA_PEA	No assigned EC number	0.8936	0.7562	0.9974	N/A	no
Q32PI5	2AAA_BOVIN	No assigned EC number	0.5747	0.9808	0.8675	yes	no
Q38950	2AAB_ARATH	No assigned EC number	0.9347	0.8502	0.7546	yes	no
P30153	2AAA_HUMAN	No assigned EC number	0.5747	0.9808	0.8675	yes	no
P31383	2AAA_YEAST	No assigned EC number	0.4352	0.9769	0.8015	yes	no
P54612	2AAA_PIG	No assigned EC number	0.5747	0.9808	0.8675	yes	no
Q09543	2AAA_CAEEL	No assigned EC number	0.4739	0.9846	0.8694	yes	no
Q38951	2AAG_ARATH	No assigned EC number	0.9117	0.8502	0.7546	no	no
Q76MZ3	2AAA_MOUSE	No assigned EC number	0.5747	0.9808	0.8675	yes	no
Q9UT08	2AAA_SCHPO	No assigned EC number	0.4856	0.9884	0.8728	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	521
COG1413	335	COG1413, COG1413, FOG: HEAT repeat [Energy product	2e-05
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	4e-04
COG1413	335	COG1413, COG1413, FOG: HEAT repeat [Energy product	6e-04
pfam13646	88	pfam13646, HEAT_2, HEAT repeats	0.002

>gnl|CDD|224331 COG1413, COG1413, FOG: HEAT repeat [Energy production and conversion]

 Score = 46.4 bits (110), Expect = 2e-05
 Identities = 48/219 (21%), Positives = 75/219 (34%), Gaps = 34/219 (15%)

Query: 22  LPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAA-GEWFTARVSAC 80
           +P L  L + E+  VRD A ++L  +G             PLV+ L           +A 
Sbjct: 76  VPLLRELLSDEDPRVRDAAADALGELGDPEA-------VPPLVELLENDENEGVRAAAAR 128

Query: 81  GLFHI----AYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTD 136
            L  +    A     + L+ E            +  VR +AA  LG+         L   
Sbjct: 129 ALGKLGDERALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGELGDPEAIPLLI-- 186

Query: 137 IMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVA 196
                 +L +D+   VR  A     ALG+L            ++V    D+S  VR    
Sbjct: 187 ------ELLEDEDADVRRAAAS---ALGQLGSE---NVEAADLLVKALSDESLEVR---- 230

Query: 197 NQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAA 235
                   A+G      + V A  + L D +  + + AA
Sbjct: 231 ---KAALLALGEIGDE-EAVDALAKALEDEDVILALLAA 265

Length = 335

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 40.0 bits (94), Expect = 4e-04
 Identities = 19/107 (17%), Positives = 36/107 (33%), Gaps = 6/107 (5%)

Query: 212 RMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAI---QHILPCVKELSSDSSQH 268
           +   +PA V LL  ++  V+  AA  ++      N  +        LP + +L     + 
Sbjct: 5   QAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEE 64

Query: 269 VRSALASV---IMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNI 312
           V  A       +                +P  ++LL     D++ N 
Sbjct: 65  VVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNA 111

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|224331 COG1413, COG1413, FOG: HEAT repeat [Energy production and conversion]

 Score = 41.8 bits (98), Expect = 6e-04
 Identities = 57/211 (27%), Positives = 84/211 (39%), Gaps = 27/211 (12%)

Query: 144 LTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELC 203
           L +D+   VRL A     ALG+L   +      +P++     D+  RVR   A+ L EL 
Sbjct: 51  LLEDEDLLVRLSAAV---ALGELGSEE-----AVPLLRELLSDEDPRVRDAAADALGEL- 101

Query: 204 EAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSS 263
              G       LV     L  D    VR AAA    +    L  E A+  +L  +++  S
Sbjct: 102 ---GDPEAVPPLVEL---LENDENEGVRAAAA----RALGKLGDERALDPLLEALQDEDS 151

Query: 264 DSSQHVR-SALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV 322
            S+     +AL  V    A  LG+    E +  + + LL+DE  DVR    S L Q    
Sbjct: 152 GSAAAALDAALLDVRAAAAEALGELGDPEAIPLL-IELLEDEDADVRRAAASALGQ---- 206

Query: 323 IGIDLLSQSLLPAIVELAEDRHWRVRLAIIE 353
             +   +      +V+   D    VR A + 
Sbjct: 207 --LGSENVEAADLLVKALSDESLEVRKAALL 235

Length = 335

>gnl|CDD|222285 pfam13646, HEAT_2, HEAT repeats

 Score = 36.9 bits (86), Expect = 0.002
 Identities = 28/95 (29%), Positives = 42/95 (44%), Gaps = 16/95 (16%)

Query: 141 FEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLY 200
            E L  D    VR  A     ALG+L +P+      LP ++   +D    VR   A  L 
Sbjct: 5   LEALLSDPDPEVRAAAAR---ALGELGDPE-----ALPALLELLKDPDPEVRRAAAEALG 56

Query: 201 ELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAA 235
           +L +         + +PA + LL+D++  V  AAA
Sbjct: 57  KLGDP--------EALPALLELLQDDDDAVVRAAA 83

This family includes multiple HEAT repeats. Length = 88

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	521
KOG0211	759	consensus Protein phosphatase 2A regulatory subuni	100.0
KOG0211	759	consensus Protein phosphatase 2A regulatory subuni	100.0
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	100.0
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	100.0
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	99.97
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	99.95
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	99.95
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	99.92
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	99.91
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	99.9
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	99.9
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	99.89
KOG1242	569	consensus Protein containing adaptin N-terminal re	99.89
KOG1824	1233	consensus TATA-binding protein-interacting protein	99.89
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.88
KOG1242	569	consensus Protein containing adaptin N-terminal re	99.88
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	99.87
PRK09687	280	putative lyase; Provisional	99.87
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.86
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	99.86
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	99.85
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	99.85
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	99.84
PRK09687	280	putative lyase; Provisional	99.84
KOG0212	675	consensus Uncharacterized conserved protein [Funct	99.81
PTZ00429	746	beta-adaptin; Provisional	99.81
KOG1824	1233	consensus TATA-binding protein-interacting protein	99.8
KOG0212	675	consensus Uncharacterized conserved protein [Funct	99.79
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	99.79
KOG0915	1702	consensus Uncharacterized conserved protein [Funct	99.78
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.78
KOG0915	1702	consensus Uncharacterized conserved protein [Funct	99.76
PTZ00429	746	beta-adaptin; Provisional	99.75
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	99.69
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.68
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	99.67
KOG1943	1133	consensus Beta-tubulin folding cofactor D [Posttra	99.59
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	99.58
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.57
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	99.56
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.54
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	99.47
KOG1943	1133	consensus Beta-tubulin folding cofactor D [Posttra	99.47
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	99.47
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	99.46
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	99.42
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	99.39
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	99.39
COG1413	335	FOG: HEAT repeat [Energy production and conversion	99.37
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	99.33
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	99.32
COG1413	335	FOG: HEAT repeat [Energy production and conversion	99.31
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	99.31
KOG1020	1692	consensus Sister chromatid cohesion protein SCC2/N	99.31
KOG2259	823	consensus Uncharacterized conserved protein [Funct	99.28
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	99.28
KOG1243	690	consensus Protein kinase [General function predict	99.28
TIGR02270	410	conserved hypothetical protein. Members are found	99.27
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	99.23
KOG2259	823	consensus Uncharacterized conserved protein [Funct	99.23
TIGR02270	410	conserved hypothetical protein. Members are found	99.21
KOG1078	865	consensus Vesicle coat complex COPI, gamma subunit	99.21
KOG1991	1010	consensus Nuclear transport receptor RANBP7/RANBP8	99.17
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	99.16
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	99.14
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	99.1
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	99.1
KOG1991	1010	consensus Nuclear transport receptor RANBP7/RANBP8	99.08
KOG1078	865	consensus Vesicle coat complex COPI, gamma subunit	99.08
KOG1243	690	consensus Protein kinase [General function predict	99.06
KOG1020	1692	consensus Sister chromatid cohesion protein SCC2/N	99.04
COG5096	757	Vesicle coat complex, various subunits [Intracellu	99.02
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	99.01
KOG1820	815	consensus Microtubule-associated protein [Cytoskel	98.96
KOG1820	815	consensus Microtubule-associated protein [Cytoskel	98.96
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	98.94
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	98.92
COG5096	757	Vesicle coat complex, various subunits [Intracellu	98.85
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	98.85
KOG0413	1529	consensus Uncharacterized conserved protein relate	98.83
KOG2137	700	consensus Protein kinase [Signal transduction mech	98.82
KOG2032	533	consensus Uncharacterized conserved protein [Funct	98.81
KOG1992	960	consensus Nuclear export receptor CSE1/CAS (import	98.81
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	98.79
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	98.77
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	98.75
PF05804	708	KAP: Kinesin-associated protein (KAP)	98.73
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	98.73
KOG2032	533	consensus Uncharacterized conserved protein [Funct	98.69
KOG0567	289	consensus HEAT repeat-containing protein [General	98.67
PF05804	708	KAP: Kinesin-associated protein (KAP)	98.64
KOG2137	700	consensus Protein kinase [Signal transduction mech	98.62
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	98.62
KOG1992	960	consensus Nuclear export receptor CSE1/CAS (import	98.61
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	98.57
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	98.56
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	98.54
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	98.53
KOG2062	929	consensus 26S proteasome regulatory complex, subun	98.52
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	98.49
KOG0414	1251	consensus Chromosome condensation complex Condensi	98.48
KOG1293	678	consensus Proteins containing armadillo/beta-caten	98.47
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	98.47
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	98.47
KOG1293	678	consensus Proteins containing armadillo/beta-caten	98.47
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	98.46
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	98.46
KOG0567	289	consensus HEAT repeat-containing protein [General	98.43
KOG2025	892	consensus Chromosome condensation complex Condensi	98.43
KOG2025	892	consensus Chromosome condensation complex Condensi	98.43
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	98.43
KOG2062	929	consensus 26S proteasome regulatory complex, subun	98.43
PF13001	501	Ecm29: Proteasome stabiliser; InterPro: IPR024372	98.42
PF13001	501	Ecm29: Proteasome stabiliser; InterPro: IPR024372	98.41
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	98.39
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	98.39
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	98.38
KOG4413	524	consensus 26S proteasome regulatory complex, subun	98.38
KOG4413	524	consensus 26S proteasome regulatory complex, subun	98.37
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	98.37
KOG2956	516	consensus CLIP-associating protein [General functi	98.36
PLN03076	1780	ARF guanine nucleotide exchange factor (ARF-GEF);	98.33
KOG1967	1030	consensus DNA repair/transcription protein Mms19 [	98.3
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	98.29
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	98.28
KOG4653	982	consensus Uncharacterized conserved protein [Funct	98.25
KOG4653	982	consensus Uncharacterized conserved protein [Funct	98.22
KOG2956	516	consensus CLIP-associating protein [General functi	98.21
PF05004	309	IFRD: Interferon-related developmental regulator (	98.16
KOG1949	1005	consensus Uncharacterized conserved protein [Funct	98.1
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	98.08
KOG1525	1266	consensus Sister chromatid cohesion complex Cohesi	98.07
COG5218	885	YCG1 Chromosome condensation complex Condensin, su	98.05
PF05004	309	IFRD: Interferon-related developmental regulator (	98.05
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	98.02
KOG0413	1529	consensus Uncharacterized conserved protein relate	97.97
PF14500	262	MMS19_N: Dos2-interacting transcription regulator	97.97
KOG1822	2067	consensus Uncharacterized conserved protein [Funct	97.94
KOG1851	1710	consensus Uncharacterized conserved protein [Funct	97.92
KOG1949	1005	consensus Uncharacterized conserved protein [Funct	97.89
KOG1967	1030	consensus DNA repair/transcription protein Mms19 [	97.87
PF08506	370	Cse1: Cse1; InterPro: IPR013713 The exchange of ma	97.86
KOG1525	1266	consensus Sister chromatid cohesion complex Cohesi	97.85
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	97.82
PF14500	262	MMS19_N: Dos2-interacting transcription regulator	97.82
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	97.8
PF01347	618	Vitellogenin_N: Lipoprotein amino terminal region;	97.79
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	97.75
COG5218	885	YCG1 Chromosome condensation complex Condensin, su	97.71
COG5116	926	RPN2 26S proteasome regulatory complex component [	97.68
PLN03076	1780	ARF guanine nucleotide exchange factor (ARF-GEF);	97.68
KOG0414	1251	consensus Chromosome condensation complex Condensi	97.65
COG5116	926	RPN2 26S proteasome regulatory complex component [	97.62
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	97.61
PF01347	618	Vitellogenin_N: Lipoprotein amino terminal region;	97.61
COG5098	1128	Chromosome condensation complex Condensin, subunit	97.58
smart00638	574	LPD_N Lipoprotein N-terminal Domain.	97.58
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	97.37
COG5656	970	SXM1 Importin, protein involved in nuclear import	97.36
KOG1993	978	consensus Nuclear transport receptor KAP120 (impor	97.34
KOG2933	334	consensus Uncharacterized conserved protein [Funct	97.32
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	97.3
PF08506	370	Cse1: Cse1; InterPro: IPR013713 The exchange of ma	97.27
smart00638	574	LPD_N Lipoprotein N-terminal Domain.	97.24
PF11864	464	DUF3384: Domain of unknown function (DUF3384); Int	97.17
KOG0889	3550	consensus Histone acetyltransferase SAGA, TRRAP/TR	97.09
KOG0891	2341	consensus DNA-dependent protein kinase [Replicatio	97.06
PF12530	234	DUF3730: Protein of unknown function (DUF3730) ; I	97.05
PF12530	234	DUF3730: Protein of unknown function (DUF3730) ; I	97.04
PF11864	464	DUF3384: Domain of unknown function (DUF3384); Int	97.01
KOG0392	1549	consensus SNF2 family DNA-dependent ATPase domain-	96.96
KOG2933	334	consensus Uncharacterized conserved protein [Funct	96.92
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	96.89
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	96.76
KOG2011	1048	consensus Sister chromatid cohesion complex Cohesi	96.76
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	96.66
PF10274	183	ParcG: Parkin co-regulated protein; InterPro: IPR0	96.59
KOG1822	2067	consensus Uncharacterized conserved protein [Funct	96.59
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	96.54
COG5098	1128	Chromosome condensation complex Condensin, subunit	96.51
KOG0392	1549	consensus SNF2 family DNA-dependent ATPase domain-	96.47
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	96.45
PF03378	435	CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I	96.44
KOG2021	980	consensus Nuclear mRNA export factor receptor LOS1	96.39
KOG2213	460	consensus Apoptosis inhibitor 5/fibroblast growth	96.32
PF13251	182	DUF4042: Domain of unknown function (DUF4042)	96.27
COG5234	993	CIN1 Beta-tubulin folding cofactor D [Posttranslat	96.26
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	96.24
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	96.18
PF05536	543	Neurochondrin: Neurochondrin	96.18
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	96.17
PF13251	182	DUF4042: Domain of unknown function (DUF4042)	96.13
KOG1851	1710	consensus Uncharacterized conserved protein [Funct	96.11
COG5234	993	CIN1 Beta-tubulin folding cofactor D [Posttranslat	96.11
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	96.08
KOG2021	980	consensus Nuclear mRNA export factor receptor LOS1	96.01
PF08713	213	DNA_alkylation: DNA alkylation repair enzyme; Inte	95.95
PF12074	339	DUF3554: Domain of unknown function (DUF3554); Int	95.94
PF12074	339	DUF3554: Domain of unknown function (DUF3554); Int	95.92
PF10274	183	ParcG: Parkin co-regulated protein; InterPro: IPR0	95.9
cd08050	343	TAF6 TATA Binding Protein (TBP) Associated Factor	95.83
COG5537	740	IRR1 Cohesin [Cell division and chromosome partiti	95.75
PF01603	409	B56: Protein phosphatase 2A regulatory B subunit (	95.73
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	95.73
COG5656	970	SXM1 Importin, protein involved in nuclear import	95.72
KOG2213	460	consensus Apoptosis inhibitor 5/fibroblast growth	95.69
PF11865	160	DUF3385: Domain of unknown function (DUF3385); Int	95.68
PF08161	198	NUC173: NUC173 domain; InterPro: IPR012978 This is	95.67
cd08050	343	TAF6 TATA Binding Protein (TBP) Associated Factor	95.66
PF12054	441	DUF3535: Domain of unknown function (DUF3535); Int	95.56
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	95.54
KOG0889	3550	consensus Histone acetyltransferase SAGA, TRRAP/TR	95.53
KOG2011	1048	consensus Sister chromatid cohesion complex Cohesi	95.45
PF10521	282	DUF2454: Protein of unknown function (DUF2454); In	95.44
PF12231	372	Rif1_N: Rap1-interacting factor 1 N terminal; Inte	95.27
PF11865	160	DUF3385: Domain of unknown function (DUF3385); Int	95.22
KOG1848	1610	consensus Uncharacterized conserved protein [Funct	95.17
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	95.09
KOG2973	353	consensus Uncharacterized conserved protein [Funct	95.03
KOG2973	353	consensus Uncharacterized conserved protein [Funct	94.98
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	94.93
PF08713	213	DNA_alkylation: DNA alkylation repair enzyme; Inte	94.89
PF04118	307	Dopey_N: Dopey, N-terminal; InterPro: IPR007249 Do	94.86
KOG2549	576	consensus Transcription initiation factor TFIID, s	94.86
PF14868	559	DUF4487: Domain of unknown function (DUF4487)	94.77
PF01603	409	B56: Protein phosphatase 2A regulatory B subunit (	94.73
PF12054	441	DUF3535: Domain of unknown function (DUF3535); Int	94.59
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	94.58
PF03378	435	CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I	94.32
PF08389	148	Xpo1: Exportin 1-like protein; InterPro: IPR013598	94.3
PF08767	319	CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1	94.28
KOG3678	832	consensus SARM protein (with sterile alpha and arm	94.13
KOG2149	393	consensus Uncharacterized conserved protein [Funct	94.06
PF08767	319	CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1	94.03
KOG2549	576	consensus Transcription initiation factor TFIID, s	94.01
cd03568	144	VHS_STAM VHS domain family, STAM subfamily; member	93.86
PF07571	92	DUF1546: Protein of unknown function (DUF1546); In	93.86
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	93.84
PF10521	282	DUF2454: Protein of unknown function (DUF2454); In	93.75
KOG2038	988	consensus CAATT-binding transcription factor/60S r	93.67
KOG2081	559	consensus Nuclear transport regulator [Intracellul	93.54
PF08161	198	NUC173: NUC173 domain; InterPro: IPR012978 This is	93.49
cd03569	142	VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s	93.38
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	93.3
PF12830	187	Nipped-B_C: Sister chromatid cohesion C-terminus	93.23
COG5537	740	IRR1 Cohesin [Cell division and chromosome partiti	93.21
cd03567	139	VHS_GGA VHS domain family, GGA subfamily; GGA (Gol	93.2
KOG1848	1610	consensus Uncharacterized conserved protein [Funct	93.18
PF12830	187	Nipped-B_C: Sister chromatid cohesion C-terminus	93.17
KOG2005	878	consensus 26S proteasome regulatory complex, subun	93.05
cd03568	144	VHS_STAM VHS domain family, STAM subfamily; member	92.95
KOG0803	1312	consensus Predicted E3 ubiquitin ligase [Posttrans	92.93
COG5095	450	TAF6 Transcription initiation factor TFIID, subuni	92.85
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	92.71
PF04118	307	Dopey_N: Dopey, N-terminal; InterPro: IPR007249 Do	92.64
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	92.47
cd03561	133	VHS VHS domain family; The VHS domain is present i	92.38
KOG2149	393	consensus Uncharacterized conserved protein [Funct	92.36
PF08389	148	Xpo1: Exportin 1-like protein; InterPro: IPR013598	92.33
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	92.23
PF07571	92	DUF1546: Protein of unknown function (DUF1546); In	92.21
PF12765	42	Cohesin_HEAT: HEAT repeat associated with sister c	92.12
cd03569	142	VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s	92.08
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	91.87
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	91.69
PF00790	140	VHS: VHS domain; InterPro: IPR002014 The VHS domai	91.69
PF08064	107	UME: UME (NUC010) domain; InterPro: IPR012993 This	91.5
KOG0803	1312	consensus Predicted E3 ubiquitin ligase [Posttrans	91.39
smart00288	133	VHS Domain present in VPS-27, Hrs and STAM. Unpubl	91.35
KOG2005	878	consensus 26S proteasome regulatory complex, subun	91.27
PF12765	42	Cohesin_HEAT: HEAT repeat associated with sister c	91.12
cd03567	139	VHS_GGA VHS domain family, GGA subfamily; GGA (Gol	90.91
cd06561	197	AlkD_like A new structural DNA glycosylase. This d	90.81
KOG1048	717	consensus Neural adherens junction protein Plakoph	90.75
KOG2022	982	consensus Nuclear transport receptor LGL2 (importi	90.22
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	90.14
PF08064	107	UME: UME (NUC010) domain; InterPro: IPR012993 This	89.89
PF00790	140	VHS: VHS domain; InterPro: IPR002014 The VHS domai	89.87
cd07064	208	AlkD_like_1 A new structural DNA glycosylase conta	89.86
PF08623	169	TIP120: TATA-binding protein interacting (TIP20);	89.86
PF14225	262	MOR2-PAG1_C: Cell morphogenesis C-terminal	89.6
KOG0891	2341	consensus DNA-dependent protein kinase [Replicatio	89.43
cd06561	197	AlkD_like A new structural DNA glycosylase. This d	89.03
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	88.86
PF14222	552	MOR2-PAG1_N: Cell morphogenesis N-terminal	88.41
KOG3036	293	consensus Protein involved in cell differentiation	88.3
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	88.03
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	87.94
COG5095	450	TAF6 Transcription initiation factor TFIID, subuni	87.9
cd00197	115	VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamil	87.87
KOG2081	559	consensus Nuclear transport regulator [Intracellul	87.78
cd03565	141	VHS_Tom1 VHS domain family, Tom1 subfamily; The VH	87.76
COG5101	1053	CRM1 Importin beta-related nuclear transport recep	87.62
KOG1993	978	consensus Nuclear transport receptor KAP120 (impor	87.51
cd03572	122	ENTH_epsin_related ENTH domain, Epsin Related fami	86.76
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	86.7
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	86.55
PF05536	543	Neurochondrin: Neurochondrin	86.43
KOG2229	616	consensus Protein required for actin cytoskeleton	86.1
KOG1048	717	consensus Neural adherens junction protein Plakoph	86.1
PF08623	169	TIP120: TATA-binding protein interacting (TIP20);	86.04
KOG4524	1014	consensus Uncharacterized conserved protein [Funct	85.96
KOG2038	988	consensus CAATT-binding transcription factor/60S r	85.9
smart00802	107	UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1.	85.89
cd03561	133	VHS VHS domain family; The VHS domain is present i	85.76
smart00288	133	VHS Domain present in VPS-27, Hrs and STAM. Unpubl	85.59
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	85.54
PF12231	372	Rif1_N: Rap1-interacting factor 1 N terminal; Inte	85.51
PF09324	86	DUF1981: Domain of unknown function (DUF1981); Int	84.91
KOG2022	982	consensus Nuclear transport receptor LGL2 (importi	84.61
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	84.29
PF09324	86	DUF1981: Domain of unknown function (DUF1981); Int	84.16
PF11935	239	DUF3453: Domain of unknown function (DUF3453); Int	83.58
cd03565	141	VHS_Tom1 VHS domain family, Tom1 subfamily; The VH	82.65
PF14868	559	DUF4487: Domain of unknown function (DUF4487)	82.28
smart00567	30	EZ_HEAT E-Z type HEAT repeats. Present in subunits	81.98
PF07539	141	DRIM: Down-regulated in metastasis; InterPro: IPR0	81.7
cd00197	115	VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamil	81.68
COG5369	743	Uncharacterized conserved protein [Function unknow	81.25
PF14225	262	MOR2-PAG1_C: Cell morphogenesis C-terminal	80.2

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]

Probab=100.00  E-value=1.2e-47  Score=374.10  Aligned_cols=519  Identities=52%  Similarity=0.798  Sum_probs=490.5

Q ss_pred             ChhhhhccccCCCcchhHHhhhhHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHHHhHHHHHHHhhcCCCCcchhhhh
Q 009975            1 MAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSAC   80 (521)
Q Consensus         1 ~a~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~p~i~~~~~~~~~~~r~~~~   80 (521)
                      +|.++|.+.+++||++|.+.+++.+++++.+.+..+|+.+++.+..++...+.+..+.++.|.+..+..+++++.|..+|
T Consensus       140 ~a~~~~~~~~~v~~~~~~~~ll~~le~l~~~eet~vr~k~ve~l~~v~~~~~~~~~~~~lv~l~~~l~~~d~~~sr~sac  219 (759)
T KOG0211|consen  140 LAEQLGTFLPDVGGPEYAHMLLPPLELLATVEETGVREKAVESLLKVAVGLPKEKLREHLVPLLKRLATGDWFQSRLSAC  219 (759)
T ss_pred             HHHHhcccchhccchhHHHHhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHccchhhhhcchhhh
Confidence            47899999999999999999999999999999999999999999999999999888999999999999999999999999


Q ss_pred             hhhhhhcCCCC-hHHHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCCChhHHHHHHHH
Q 009975           81 GLFHIAYPSAP-DILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEG  159 (521)
Q Consensus        81 ~~~~~~~~~~~-~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~  159 (521)
                      ++++..+...+ +.++.++.+...++++|.++.||..++..++.+++.++.......++|.+.++..|+.+.||..|...
T Consensus       220 glf~~~~~~~~~~~vk~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~  299 (759)
T KOG0211|consen  220 GLFGKLYVSLPDDAVKRELRPIVQSLCQDDTPMVRRAVASNLGNIAKVLESEIVKSEVLPTLIQLLRDDQDSVREAAVES  299 (759)
T ss_pred             hhhHHhccCCChHHHHHHHHHHHHhhccccchhhHHHHHhhhHHHHHHHHHHHHHhhccHHHhhhhhcchhhHHHHHHHH
Confidence            99999999888 44899999999999999999999999999999999999888899999999999999999999999999


Q ss_pred             HHHHhhhcChh-hhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhH
Q 009975          160 CAALGKLLEPQ-DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKV  238 (521)
Q Consensus       160 l~~l~~~~~~~-~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l  238 (521)
                      +..+.+.+..+ +..+.+.+.+.+..+|.+|.+|...+..+..+...++++.......+.+...++|+.+++|.++..-.
T Consensus       300 ~~~l~~l~~~~~d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~  379 (759)
T KOG0211|consen  300 LVSLLDLLDDDDDVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGPSATRTQLVPPVSNLLKDEEWEVRYAIAKKV  379 (759)
T ss_pred             HHHHHHhcCCchhhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhccccCcccchhhHHHHhcchhhhhhHHhhcch
Confidence            99999999887 78888999999999999999999999999999999999888889999999999999999999999999


Q ss_pred             HHHHhhhC----HHHHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccChHHHHHhHHHHHHHhhcCCChHHHHHHH-
Q 009975          239 TKFCRILN----PELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNII-  313 (521)
Q Consensus       239 ~~l~~~~~----~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~-  313 (521)
                      ..+....+    ++...+.++|.+..+..|.+..||.+.+..+..+.+.+|++...+.+.|.+...++|..++||.... 
T Consensus       380 ~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k~~ti~~llp~~~~~l~de~~~V~lnli~  459 (759)
T KOG0211|consen  380 QKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPKERTISELLPLLIGNLKDEDPIVRLNLID  459 (759)
T ss_pred             HHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCCcCcCccccChhhhhhcchhhHHHHHhhHH
Confidence            99988887    4455667889999999999999999999999999999999988999999999999999999999999 


Q ss_pred             --HHHHHhhhhhchhhHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChhhhHHHHHHHHHHHcCCCcHHHHHHHH
Q 009975          314 --SKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAA  391 (521)
Q Consensus       314 --~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~  391 (521)
                        ..+..+....|.+.+.+..+|.+..+..|.+|++|.++++.+..++...|..++.+.+.+.+..++.|....+|.+|.
T Consensus       460 ~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~~~~~~~~~~~l~~~~l~d~v~~Ir~~aa  539 (759)
T KOG0211|consen  460 KLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLGVEFFDEKLAELLRTWLPDHVYSIREAAA  539 (759)
T ss_pred             HHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhhhhhhHHHHHHHHH
Confidence              555556677888888899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChHHHhhcHHHHHHhhcCCCCchHHHHHHHH
Q 009975          392 NNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKV  471 (521)
Q Consensus       392 ~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~VR~~a~~~  471 (521)
                      ..+..++..+|.+|....++|.+..+..+++|..|.+.+.++..++..+|.+.+.++++|.+..+..|++++||.++++.
T Consensus       540 ~~l~~l~~~~G~~w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~  619 (759)
T KOG0211|consen  540 RNLPALVETFGSEWARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKDPVANVRINVAKH  619 (759)
T ss_pred             HHhHHHHHHhCcchhHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccCCchhhhhhHHHH
Confidence            99999999999999999999999999888899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhchHHHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHHhhc
Q 009975          472 LQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMM  519 (521)
Q Consensus       472 l~~~~~~~~~~~~~~~~~~~l~~l~~D~~~~vr~~a~~al~~l~~~~~  519 (521)
                      +..+.+.+......+.++|.+..+..|++.|||..|..|++.+.....
T Consensus       620 L~~i~~~L~~~~~~~~v~pll~~L~~d~~~dvr~~a~~a~~~i~l~~~  667 (759)
T KOG0211|consen  620 LPKILKLLDESVRDEEVLPLLETLSSDQELDVRYRAILAFGSIELSRL  667 (759)
T ss_pred             HHHHHhhcchHHHHHHHHHHHHHhccCcccchhHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999998876554

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]

Probab=100.00  E-value=2.2e-33  Score=274.43  Aligned_cols=497  Identities=19%  Similarity=0.243  Sum_probs=401.4

Q ss_pred             hhHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHHHhHHHHHHHhhcCCCCcchhhhhhhhhhhcCCCC-hHHHHHHHH
Q 009975           22 LPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAP-DILKTELRS  100 (521)
Q Consensus        22 ~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~p~i~~~~~~~~~~~r~~~~~~~~~~~~~~~-~~~~~~l~~  100 (521)
                      +..+.+.....|-.-|..+.+.+..+.-..+.+..+..++|++.+.. ++..++...+..-++.+.+... +.+...+.+
T Consensus        84 ia~l~~e~~~~di~~r~~~~~~l~~~a~~~~~~~tr~~lipf~~e~~-~~~dev~~~~a~~~~~~~~~v~~~~~~~~ll~  162 (759)
T KOG0211|consen   84 IAVLIDELSNTDIQLRLNSGRKLSNLALALGVERTRLELIPFLTEAE-DDEDEVLLDLAEQLGTFLPDVGGPEYAHMLLP  162 (759)
T ss_pred             HHHHhhccCchhhhhhhhhhccccchhhhcccchhhhhhhhHHHHhc-cchhHHHHHHHHHhcccchhccchhHHHHhhH
Confidence            44455666777888899999999999999998888899999998888 5555666666555555554332 235677888


Q ss_pred             HHHHhcCCCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcChhhhhhhhHHHH
Q 009975          101 IYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVI  180 (521)
Q Consensus       101 ~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l  180 (521)
                      .+..++.+..+.||+++++.+..++...+++.....+.|++..+..++....|..++..++......+++..+..+.|..
T Consensus       163 ~le~l~~~eet~vr~k~ve~l~~v~~~~~~~~~~~~lv~l~~~l~~~d~~~sr~sacglf~~~~~~~~~~~vk~elr~~~  242 (759)
T KOG0211|consen  163 PLELLATVEETGVREKAVESLLKVAVGLPKEKLREHLVPLLKRLATGDWFQSRLSACGLFGKLYVSLPDDAVKRELRPIV  242 (759)
T ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHccchhhhhcchhhhhhhHHhccCCChHHHHHHHHHHH
Confidence            99999999999999999999999999988877789999999999998878889999999999999888778899999999


Q ss_pred             HHhcCCCChHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHH-HHHHhhhHHHH
Q 009975          181 VNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE-LAIQHILPCVK  259 (521)
Q Consensus       181 ~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~-~~~~~~~~~l~  259 (521)
                      .++++|..++||.++++.++.+++.++.+...+.++|.+.++..|+...||.+|...+..+...+... ...+.+.+.+.
T Consensus       243 ~~lc~d~~~~Vr~~~a~~l~~~a~~~~~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~d~~~~~~~~l~  322 (759)
T KOG0211|consen  243 QSLCQDDTPMVRRAVASNLGNIAKVLESEIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDDDVVKSLTESLV  322 (759)
T ss_pred             HhhccccchhhHHHHHhhhHHHHHHHHHHHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCchhhhhhhhHHHH
Confidence            99999999999999999999999999998888999999999999999999999999999999998776 77778899999


Q ss_pred             HhccCCcHHHHHHHHHHHHccccccChHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhc----hhhHhhhHHHH
Q 009975          260 ELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG----IDLLSQSLLPA  335 (521)
Q Consensus       260 ~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~----~~~~~~~~~~~  335 (521)
                      +..+|++|++|......+..+...+|.+.......+.+..+++|...++|.++......+.....    ++...+.++|.
T Consensus       323 ~~~~d~~~~v~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~  402 (759)
T KOG0211|consen  323 QAVEDGSWRVSYMVADKFSELSSAVGPSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPE  402 (759)
T ss_pred             HHhcChhHHHHHHHhhhhhhHHHHhccccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHH
Confidence            99999999999999999999998888866666778888888888888888888877777766655    33333556677


Q ss_pred             HHHHhcCCChHHHHHHHHHhHHHHhhhChh------------------------------------------hhHHHHHH
Q 009975          336 IVELAEDRHWRVRLAIIEYIPLLASQLGVG------------------------------------------FFDDKLGA  373 (521)
Q Consensus       336 l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~------------------------------------------~~~~~l~~  373 (521)
                      +..+..|.+..+|.+.+..+..+...+|.+                                          .+.+..+|
T Consensus       403 ~~~lv~d~~~~vr~a~a~~~~~~~p~~~k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp  482 (759)
T KOG0211|consen  403 VQVLVLDNALHVRSALASVITGLSPILPKERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLP  482 (759)
T ss_pred             HHHHHhcccchHHHHHhccccccCccCCcCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhh
Confidence            777777777777776665555544444433                                          23344555


Q ss_pred             HHHHHcCCCcHHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChHHHhhcHHHHH
Q 009975          374 LCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVV  453 (521)
Q Consensus       374 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~il~~l  453 (521)
                      .+..+..|..|.+|.+..+.+..++...|..++.+.+-+.+...+.|..+.+|.++...+..++..+|.++....++|.+
T Consensus       483 ~i~el~~d~~wRvr~ail~~ip~la~q~~~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~w~~~~~i~k~  562 (759)
T KOG0211|consen  483 AIVELAEDLLWRVRLAILEYIPQLALQLGVEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFGSEWARLEEIPKL  562 (759)
T ss_pred             hhhhhccchhHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCcchhHHHhhHHH
Confidence            66666666666666666666666666666555555555555556666667777777777777777777655666777777


Q ss_pred             HhhcCCCCchHHHHHHHHHHHHHhhhchHHHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHHhhc
Q 009975          454 INASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMM  519 (521)
Q Consensus       454 ~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~~~~~~~~l~~l~~D~~~~vr~~a~~al~~l~~~~~  519 (521)
                      +....++++.+|.+.+.++..+++.+|.+.+.++++|.+.++..|++++||.++++.+..+.+.+-
T Consensus       563 L~~~~q~~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~  628 (759)
T KOG0211|consen  563 LAMDLQDNYLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLD  628 (759)
T ss_pred             HHHhcCcccchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcc
Confidence            777777788888888888888888889999999999999999999999999999999999988764

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=9.6e-31  Score=241.57  Aligned_cols=502  Identities=20%  Similarity=0.199  Sum_probs=370.5

Q ss_pred             CcchhHHhhhhHHhhhhcCchhHHHHHHHHHHHHHHhhcCh-------hHHHHhHHHHHHHhhcCCCCcchhhhhhhhhh
Q 009975           13 GGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRE-------SDLVDWYIPLVKRLAAGEWFTARVSACGLFHI   85 (521)
Q Consensus        13 ~~~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~-------~~~~~~l~p~i~~~~~~~~~~~r~~~~~~~~~   85 (521)
                      ||-++++.++|.|.++++++|.+....|..+|.+||+....       ++..+.++|.+.++.++.+...|.-|+..+..
T Consensus       121 ~~~~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq  200 (885)
T KOG2023|consen  121 GGLQHWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQ  200 (885)
T ss_pred             cccccchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhh
Confidence            45678999999999999999999999999999999997432       23346889999999998888999988887776


Q ss_pred             hcCCCChH---HHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCch--hhHHHHHHHHHHhhcCCChhHHHHHHHHH
Q 009975           86 AYPSAPDI---LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPA--HLKTDIMSIFEDLTQDDQDSVRLLAVEGC  160 (521)
Q Consensus        86 ~~~~~~~~---~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~l~~d~~~~vr~~a~~~l  160 (521)
                      +...-+..   ..+.++..+..+..|++|+||+..+.++..+.+.-+..  .....++..+.+..+|.+++|...|++.+
T Consensus       201 ~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFw  280 (885)
T KOG2023|consen  201 FIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFW  280 (885)
T ss_pred             eeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHH
Confidence            65444433   46778888899999999999999999999988765532  25567888888899999999999999999


Q ss_pred             HHHhhhc-Chh---hhhhhhHHHHHHh----------cC------------------------------------C----
Q 009975          161 AALGKLL-EPQ---DCVAHILPVIVNF----------SQ------------------------------------D----  186 (521)
Q Consensus       161 ~~l~~~~-~~~---~~~~~l~~~l~~~----------~~------------------------------------d----  186 (521)
                      ..+++.- .++   .+...++|.+...          ++                                    |    
T Consensus       281 la~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~  360 (885)
T KOG2023|consen  281 LALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDED  360 (885)
T ss_pred             HHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCcccccccccccccc
Confidence            9998863 222   2334466655431          11                                    0    


Q ss_pred             ------CChHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhC--HHHHHHhhhHHH
Q 009975          187 ------KSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN--PELAIQHILPCV  258 (521)
Q Consensus       187 ------~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~--~~~~~~~~~~~l  258 (521)
                            .+|..|+..+.++.-++..++++.. +.++|.+.+.+..++|-||++++-++|.+++..-  --...+.++|++
T Consensus       361 DDdD~~~dWNLRkCSAAaLDVLanvf~~elL-~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l  439 (885)
T KOG2023|consen  361 DDDDAFSDWNLRKCSAAALDVLANVFGDELL-PILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFL  439 (885)
T ss_pred             ccccccccccHhhccHHHHHHHHHhhHHHHH-HHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHH
Confidence                  1389999999999999998887764 7799999999999999999999999999999752  224466789999


Q ss_pred             HHhccCCcHHHHHHHHHHHHccccccChH---HHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchhhH--hhhHH
Q 009975          259 KELSSDSSQHVRSALASVIMGMAPLLGKD---ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL--SQSLL  333 (521)
Q Consensus       259 ~~~~~d~~~~vr~~~~~~l~~i~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~--~~~~~  333 (521)
                      ..++.|+.+-||+..++.+++++...-.+   .+...++..+.+.+-|.+..|+++|+.++..+-+..|.+.+  .+.++
T Consensus       440 ~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL  519 (885)
T KOG2023|consen  440 LSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVPYLEYIL  519 (885)
T ss_pred             HHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHHHHHHHH
Confidence            99999999999999999999998776433   33344555556666799999999999999999887774432  11222


Q ss_pred             HHHHHHh---cCCChHHHHHHHHHhHHHHhhhC----hhhhHHHHHHHHH---HHcCCCcHHHHHHHHHHHHHHHHHhCH
Q 009975          334 PAIVELA---EDRHWRVRLAIIEYIPLLASQLG----VGFFDDKLGALCM---QWLQDKVYSIRDAAANNLKRLAEEFGP  403 (521)
Q Consensus       334 ~~l~~~~---~~~~~~vr~~~~~~l~~l~~~~~----~~~~~~~l~~~l~---~~l~d~~~~vr~~a~~~l~~l~~~~~~  403 (521)
                      ..+...+   +.+|-.+   ...+++.++..+|    +..|.+.++|.++   +.++|.++++ --.++|+..++..+|.
T Consensus       520 ~~l~~af~kYQ~KNLlI---LYDAIgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~~lsd~DKdL-fPLLEClSsia~AL~~  595 (885)
T KOG2023|consen  520 DQLVFAFGKYQKKNLLI---LYDAIGTLADSVGHALNKPAYIQILMPPLIEKWELLSDSDKDL-FPLLECLSSIASALGV  595 (885)
T ss_pred             HHHHHHHHHHhhcceeh---HHHHHHHHHHHHHHhcCcHHHHHHhccHHHHHHHhcCcccchH-HHHHHHHHHHHHHHhc
Confidence            2222222   2233333   4455666666554    4566777777664   4588888876 4467888888888875


Q ss_pred             HHH--Hhh-------h----HHHHHhhhcC-----cchHHHHHHHHHHHHhhcccChH----HHhhcHHHHHHhhcCCCC
Q 009975          404 EWA--MQH-------I----TPQVLEMINN-----PHYLYRMTILRAISLLAPVMGSE----ITCSRLLPVVINASKDRV  461 (521)
Q Consensus       404 ~~~--~~~-------l----~~~l~~~l~~-----~~~~~r~~a~~~l~~l~~~~~~~----~~~~~il~~l~~~l~d~~  461 (521)
                      .+.  ...       +    ...+...-.+     ++...-..++..++.+++.+|..    .....++..+++++.|+.
T Consensus       596 gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~sLDL~SGLaegLg~~ie~Lva~snl~~lll~C~~D~~  675 (885)
T KOG2023|consen  596 GFLPYAQPVYQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIVSLDLLSGLAEGLGSHIEPLVAQSNLLDLLLQCLQDEV  675 (885)
T ss_pred             cccccCHHHHHHHHHHHHHHHHHHHhccCCccccCCCcceEEEeHHHHhHHHHHhhhchHHHhhhccHHHHHHHHhccCC
Confidence            431  111       1    1122222222     23344467888999999877753    245679999999999999


Q ss_pred             chHHHHHHHHHHHHHhhhchH--HHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHHhhc
Q 009975          462 PNIKFNVAKVLQSLIPIVDQS--MVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMM  519 (521)
Q Consensus       462 ~~VR~~a~~~l~~~~~~~~~~--~~~~~~~~~l~~l~~D~~~~vr~~a~~al~~l~~~~~  519 (521)
                      ++||+.+...||-+.......  .....++|.+-.-++-....|-.+|.||++.++..|+
T Consensus       676 peVRQS~FALLGDltk~c~~~v~p~~~~fl~~lg~Nl~~~~isv~nNA~WAiGeia~k~g  735 (885)
T KOG2023|consen  676 PEVRQSAFALLGDLTKACFEHVIPNLADFLPILGANLNPENISVCNNAIWAIGEIALKMG  735 (885)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHhhcCChhhchHHHHHHHHHHHHHHHhc
Confidence            999999999999998875322  1234555665544455577889999999999998876

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=6.5e-28  Score=237.88  Aligned_cols=487  Identities=14%  Similarity=0.183  Sum_probs=374.6

Q ss_pred             hhhHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHHHhHHHHHHHhhc-CCCCcchhhhhhh----hhhhcCCCChHHH
Q 009975           21 LLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAA-GEWFTARVSACGL----FHIAYPSAPDILK   95 (521)
Q Consensus        21 l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~p~i~~~~~-~~~~~~r~~~~~~----~~~~~~~~~~~~~   95 (521)
                      +.+++.++.+ +|..+|+.|.+++..+...-       .++|.+..... .++..+|..+..+    +...|+.++.+++
T Consensus         6 l~qLl~~l~s-pDn~vr~~Ae~~l~~~~~~~-------~~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~   77 (1075)
T KOG2171|consen    6 LEQLLQQLLS-PDNEVRRQAEEALETLAKTE-------PLLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLSAEVQ   77 (1075)
T ss_pred             HHHHHHHhcC-CCchHHHHHHHHHHHhhccc-------chHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCCHHHH
Confidence            4556666665 66678999999999887753       26777766655 5577888776644    4456788888888


Q ss_pred             HHHHHHHHH-hcCCCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcChh--hh
Q 009975           96 TELRSIYTQ-LCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ--DC  172 (521)
Q Consensus        96 ~~l~~~l~~-l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~--~~  172 (521)
                      ..+...+.. ..+.+.+.||++.+..+..+++...++ -|+++++.+.+..+++++..|..|..++..+...++..  .+
T Consensus        78 ~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e-~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~  156 (1075)
T KOG2171|consen   78 QSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPE-KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPH  156 (1075)
T ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhcccc-chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchh
Confidence            888886665 455678999999999999999988877 89999999999999999999999999999999988764  24


Q ss_pred             hhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCcc--------ccchHHHHHHhcCCChHHHHHHHHHhHHHHHhh
Q 009975          173 VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPT--------RMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRI  244 (521)
Q Consensus       173 ~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~--------~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~  244 (521)
                      ...+.+++.+.+.|++..||..++++++.++.....+..        .+.++..+.+.+.+++...-..++++|..+++.
T Consensus       157 ~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~  236 (1075)
T KOG2171|consen  157 LDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLES  236 (1075)
T ss_pred             HHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhh
Confidence            567999999999998888999999999999988752211        123444455566777777778888888888887


Q ss_pred             hCHH--HHHHhhhHHHHHhccC--CcHHHHHHHHHHHHccccccCh-----HHHHHhHHHHHHHhhcCCC----------
Q 009975          245 LNPE--LAIQHILPCVKELSSD--SSQHVRSALASVIMGMAPLLGK-----DATIEQLLPIFLSLLKDEF----------  305 (521)
Q Consensus       245 ~~~~--~~~~~~~~~l~~~~~d--~~~~vr~~~~~~l~~i~~~~~~-----~~~~~~l~~~l~~~l~d~~----------  305 (521)
                      .++-  .....++....+...+  -+..+|..+++.+..+++.-+.     ......++|.++.++.|..          
T Consensus       237 ~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~  316 (1075)
T KOG2171|consen  237 EPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDD  316 (1075)
T ss_pred             chHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccc
Confidence            6542  3344455555555554  4678999999988887765211     1134567777777765321          


Q ss_pred             ------hHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChhh--hHHHHHHHHHH
Q 009975          306 ------PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQ  377 (521)
Q Consensus       306 ------~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~  377 (521)
                            ..-...|.+++..++..+|++.+...+++.+..++.+++|.-|.+++.+++.+++.+++..  -.+.++|.+++
T Consensus       317 ~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~  396 (1075)
T KOG2171|consen  317 LDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLN  396 (1075)
T ss_pred             cccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence                  1246678899999999999988889999999999999999999999999999999887743  34779999999


Q ss_pred             HcCCCcHHHHHHHHHHHHHHHHHhCHHH---HHhhhHHHHHhhhcCc-chHHHHHHHHHHHHhhcccChHHH---hhcHH
Q 009975          378 WLQDKVYSIRDAAANNLKRLAEEFGPEW---AMQHITPQVLEMINNP-HYLYRMTILRAISLLAPVMGSEIT---CSRLL  450 (521)
Q Consensus       378 ~l~d~~~~vr~~a~~~l~~l~~~~~~~~---~~~~l~~~l~~~l~~~-~~~~r~~a~~~l~~l~~~~~~~~~---~~~il  450 (521)
                      .++|+++.||.+|+.++|.+...+.++.   +.+.+.|.+...+.++ +.++...|+.++-.+...+..+.+   .+.++
T Consensus       397 ~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm  476 (1075)
T KOG2171|consen  397 GLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLM  476 (1075)
T ss_pred             hcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence            9999999999999999999999998764   3466777888877775 679999999999999988777654   34555


Q ss_pred             H-HHHhhcCCCCchHHHHHHHHHHHHHhhhchH--HHHhhHHHHHHHhcCC----CCccHHHHHHHHHHHHHH
Q 009975          451 P-VVINASKDRVPNIKFNVAKVLQSLIPIVDQS--MVEKTIRPCLVELTED----PDVDVRFFATQAIQSIDH  516 (521)
Q Consensus       451 ~-~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~--~~~~~~~~~l~~l~~D----~~~~vr~~a~~al~~l~~  516 (521)
                      . .+..++..+.+.||..++.+++.++...+..  .+.+.++|.|.+.+..    .....|....+++..+..
T Consensus       477 ~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~  549 (1075)
T KOG2171|consen  477 EKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIAR  549 (1075)
T ss_pred             HHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHH
Confidence            5 4555677889999999999999999887654  3447889999885433    234444444444444443

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=3.5e-25  Score=218.81  Aligned_cols=471  Identities=17%  Similarity=0.221  Sum_probs=368.7

Q ss_pred             hHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHHHhHHHHHHHhhcCCCCcchhhhhhhhhhhcCCCChH---HHHHHH
Q 009975           23 PPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI---LKTELR   99 (521)
Q Consensus        23 ~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~p~i~~~~~~~~~~~r~~~~~~~~~~~~~~~~~---~~~~l~   99 (521)
                      .+|....+.+.+.||+..++.+..+++...++ -|.+++|++.+..++++...|.++..++..+....+..   ....+.
T Consensus        83 ~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e-~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~  161 (1075)
T KOG2171|consen   83 SLLEIIQSETEPSVRHKLADVIAEIARNDLPE-KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLDDLL  161 (1075)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHHHHHhcccc-chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHHHHH
Confidence            33556778889999999999999999998888 79999999999999999999999988877655443332   467899


Q ss_pred             HHHHHhcCCCChHHHHHHHHhHHHHHHhhCc--hh--hHHHHHH----HHHHhhcCCChhHHHHHHHHHHHHhhhcCh--
Q 009975          100 SIYTQLCQDDMPMVRRSAASNLGKFAATVEP--AH--LKTDIMS----IFEDLTQDDQDSVRLLAVEGCAALGKLLEP--  169 (521)
Q Consensus       100 ~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~--~~--~~~~l~~----~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~--  169 (521)
                      +++.+.+.|++..||..++++++.++.....  ..  ....++|    .+....++.+......+.+++..+++..++  
T Consensus       162 ~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l  241 (1075)
T KOG2171|consen  162 RLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLL  241 (1075)
T ss_pred             HHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHH
Confidence            9999999998777999999999999988852  11  2233444    444555666777788888889888887654  


Q ss_pred             hhhhhhhHHHHHHhcCC--CChHHHHHHHHHHHHHHHHhC-----CCccccchHHHHHHhcC----CCh-----------
Q 009975          170 QDCVAHILPVIVNFSQD--KSWRVRYMVANQLYELCEAVG-----PEPTRMDLVPAYVRLLR----DNE-----------  227 (521)
Q Consensus       170 ~~~~~~l~~~l~~~~~d--~~~~vR~~~~~~l~~i~~~~~-----~~~~~~~l~~~l~~~l~----d~~-----------  227 (521)
                      ......++.+..+.+.+  -+..+|..+.+.+..+++..+     .......+++.+..++.    |++           
T Consensus       242 ~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~  321 (1075)
T KOG2171|consen  242 RPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDD  321 (1075)
T ss_pred             HHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhcccccccccc
Confidence            22344566666666655  467899999999988887632     11234567777777653    211           


Q ss_pred             -HHHHHHHHHhHHHHHhhhCHHHHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccChHH--HHHhHHHHHHHhhcCC
Q 009975          228 -AEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA--TIEQLLPIFLSLLKDE  304 (521)
Q Consensus       228 -~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~--~~~~l~~~l~~~l~d~  304 (521)
                       ..-...|..++..++..+|++.+.+.+++.+..++.+++|+-|++++.+++.+++..++..  ..+.+++.+++.++|+
T Consensus       322 ~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~Dp  401 (1075)
T KOG2171|consen  322 EETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDP  401 (1075)
T ss_pred             ccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCC
Confidence             1246788999999999999999899999999999999999999999999999998877633  3568899999999999


Q ss_pred             ChHHHHHHHHHHHHhhhhhchhh---HhhhHHHHHHHHhcC-CChHHHHHHHHHhHHHHhhhChhhhHHH---HHH-HHH
Q 009975          305 FPDVRLNIISKLDQVNQVIGIDL---LSQSLLPAIVELAED-RHWRVRLAIIEYIPLLASQLGVGFFDDK---LGA-LCM  376 (521)
Q Consensus       305 ~~~vr~~a~~~l~~~~~~~~~~~---~~~~~~~~l~~~~~~-~~~~vr~~~~~~l~~l~~~~~~~~~~~~---l~~-~l~  376 (521)
                      +|.||.+|+.+++.+...++++.   ..+.+.|.+.....+ .+.+|...++.++-.+...+.++.+.++   ++. .+.
T Consensus       402 hprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~  481 (1075)
T KOG2171|consen  402 HPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLL  481 (1075)
T ss_pred             CHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence            99999999999999998888653   335667777777666 5679999999999999988888655444   444 555


Q ss_pred             HHcCCCcHHHHHHHHHHHHHHHHHhCHHHH--HhhhHHHHHhhhcCc----chHHHHHHHHHHHHhhcccChHHHhh---
Q 009975          377 QWLQDKVYSIRDAAANNLKRLAEEFGPEWA--MQHITPQVLEMINNP----HYLYRMTILRAISLLAPVMGSEITCS---  447 (521)
Q Consensus       377 ~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~--~~~l~~~l~~~l~~~----~~~~r~~a~~~l~~l~~~~~~~~~~~---  447 (521)
                      .+++.+.+.||+.+..+++.++...+..+.  .+.++|.|...+...    ...+|-...++++.++...|.+.|.+   
T Consensus       482 ~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a~  561 (1075)
T KOG2171|consen  482 LLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPLAE  561 (1075)
T ss_pred             HHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhHH
Confidence            667889999999999999999998887653  478899998877553    36688888999999999999877654   


Q ss_pred             cHHHHHHhh---cCCCCchHHHHHHHHHHHHHhhhchH--HHHhhHHHHHHH
Q 009975          448 RLLPVVINA---SKDRVPNIKFNVAKVLQSLIPIVDQS--MVEKTIRPCLVE  494 (521)
Q Consensus       448 ~il~~l~~~---l~d~~~~VR~~a~~~l~~~~~~~~~~--~~~~~~~~~l~~  494 (521)
                      .++..+..+   ..|.+...|......++.++..+|++  .+.+.++|.+.+
T Consensus       562 eliqll~~~~~~~~~~dd~~~sy~~~~warmc~ilg~~F~p~L~~Vmppl~~  613 (1075)
T KOG2171|consen  562 ELIQLLLELQGSDQDDDDPLRSYMIAFWARMCRILGDDFAPFLPVVMPPLLK  613 (1075)
T ss_pred             HHHHHHHhhcccchhhccccHHHHHHHHHHHHHHhchhhHhHHHHHhHHHHH
Confidence            456666666   45557778999999999999999986  455777776665

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=9.5e-26  Score=208.81  Aligned_cols=495  Identities=17%  Similarity=0.183  Sum_probs=363.2

Q ss_pred             chhHHhhhhHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHHHhHHHHHHHhhcCCCCcchhhhhhhh----hhhcCCC
Q 009975           15 VEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLF----HIAYPSA   90 (521)
Q Consensus        15 ~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~p~i~~~~~~~~~~~r~~~~~~~----~~~~~~~   90 (521)
                      ++++..+.++|++-. ++|+.+|..+...+..+-. ++  ++.++++-.+.+...++. ..|..+-.++    ...++..
T Consensus         9 e~~l~ql~~lLk~s~-Spn~~~~~~~~~~leq~~~-~p--dfnnYL~~IL~~~~~~d~-~~Rs~aGLlLKNnvr~~~~~~   83 (885)
T KOG2023|consen    9 EQGLQQLAQLLKNSQ-SPNSETRNNVQEKLEQFNL-FP--DFNNYLIYILIRAKSEDV-PTRSLAGLLLKNNVRGHYNSI   83 (885)
T ss_pred             HHHHHHHHHHHHhcc-CCChHHHHHHHHHHHHHhc-cc--chhceeeEEEecccccch-hHHHHhhhhHhccccccccCC
Confidence            456667777776655 5888999999988877655 22  344565544444444333 3465543333    2334455


Q ss_pred             ChHHHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcChh
Q 009975           91 PDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ  170 (521)
Q Consensus        91 ~~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~  170 (521)
                      +.+....+...+.+.+.|.++.||....-.+.+++...+ -..|++++|.+.+++.+++.+..+.|..+|..+++-....
T Consensus        84 ~~~~~~yiKs~~l~~lgd~~~lIr~tvGivITTI~s~~~-~~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~  162 (885)
T KOG2023|consen   84 PSEVLDYIKSECLHGLGDASPLIRATVGIVITTIASTGG-LQHWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQF  162 (885)
T ss_pred             ChHHHHHHHHHHHhhccCchHHHHhhhhheeeeeecccc-cccchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHH
Confidence            666777888888888999999999888888888776654 4568999999999999999999999999999988754321


Q ss_pred             -------hhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCcc--ccchHHHHHHhcCCChHHHHHHHHHhHHHH
Q 009975          171 -------DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPT--RMDLVPAYVRLLRDNEAEVRIAAAGKVTKF  241 (521)
Q Consensus       171 -------~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~--~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l  241 (521)
                             .-.+.++|-+.++.+++++.+|..++.++.++.-.......  -+.++..+..+..|++++||+..+.+|.-+
T Consensus       163 lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~L  242 (885)
T KOG2023|consen  163 LDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFL  242 (885)
T ss_pred             HhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHH
Confidence                   12345889999999999999999999998877643332221  246777788888999999999999999998


Q ss_pred             HhhhCHH--HHHHhhhHHHHHhccCCcHHHHHHHHHHHHcccccc-ChHH---HHHhHHHHHHHhh----------c-C-
Q 009975          242 CRILNPE--LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLL-GKDA---TIEQLLPIFLSLL----------K-D-  303 (521)
Q Consensus       242 ~~~~~~~--~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~-~~~~---~~~~l~~~l~~~l----------~-d-  303 (521)
                      .+..+..  .....++.++.+..+|.+..|-..|++....+++.- .++.   +..+++|.+++.+          + + 
T Consensus       243 levr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~e  322 (885)
T KOG2023|consen  243 LEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNE  322 (885)
T ss_pred             HHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCcc
Confidence            8875443  234567888888889999999999999888887643 2222   3456677765433          2 0 


Q ss_pred             --------------------------------------------CChHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHH
Q 009975          304 --------------------------------------------EFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVEL  339 (521)
Q Consensus       304 --------------------------------------------~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~  339 (521)
                                                                  .++..|+..+.+++-+...+|.+.+ +.++|.+.+.
T Consensus       323 eD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~elL-~~l~PlLk~~  401 (885)
T KOG2023|consen  323 EDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDELL-PILLPLLKEH  401 (885)
T ss_pred             ccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHHHHH-HHHHHHHHHH
Confidence                                                        0146799999999999999997766 8999999999


Q ss_pred             hcCCChHHHHHHHHHhHHHHhhhChh--hhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHH---HHHhhhHHHH
Q 009975          340 AEDRHWRVRLAIIEYIPLLASQLGVG--FFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE---WAMQHITPQV  414 (521)
Q Consensus       340 ~~~~~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~~l  414 (521)
                      +.+..|.+|++.+-+++.+++.+-.-  .+.+.++|.++.++.|..+-||.-++.+|+++.+..-.+   .+...++.-+
T Consensus       402 L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~l  481 (885)
T KOG2023|consen  402 LSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGL  481 (885)
T ss_pred             cCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHH
Confidence            99999999999999999999887443  345678999999999999999999999999988765322   2334455555


Q ss_pred             HhhhcCcchHHHHHHHHHHHHhhcccChHH--HhhcHHHHHHhhcC---CCCchHHHHHHHHHHHHHhhh----chHHHH
Q 009975          415 LEMINNPHYLYRMTILRAISLLAPVMGSEI--TCSRLLPVVINASK---DRVPNIKFNVAKVLQSLIPIV----DQSMVE  485 (521)
Q Consensus       415 ~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~--~~~~il~~l~~~l~---d~~~~VR~~a~~~l~~~~~~~----~~~~~~  485 (521)
                      ...+-|+|.+++++|+.++..+-+..|.+-  |.++++..+...++   .++-.+=.   .+++.++...    ....+.
T Consensus       482 l~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af~kYQ~KNLlILY---DAIgtlAdsvg~~Ln~~~Yi  558 (885)
T KOG2023|consen  482 LRRLLDSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVFAFGKYQKKNLLILY---DAIGTLADSVGHALNKPAYI  558 (885)
T ss_pred             HHHHhcccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhcceehHH---HHHHHHHHHHHHhcCcHHHH
Confidence            667789999999999999999988777653  45666666555443   33333333   3444444443    344555


Q ss_pred             hhHHHHHH-H--hcCCCCccHHHHHHHHHHHHHHhhcc
Q 009975          486 KTIRPCLV-E--LTEDPDVDVRFFATQAIQSIDHVMMS  520 (521)
Q Consensus       486 ~~~~~~l~-~--l~~D~~~~vr~~a~~al~~l~~~~~~  520 (521)
                      +.++|.|. +  +++|+|+++ +-..+++.++..-+++
T Consensus       559 qiLmPPLi~KW~~lsd~DKdL-fPLLEClSsia~AL~~  595 (885)
T KOG2023|consen  559 QILMPPLIEKWELLSDSDKDL-FPLLECLSSIASALGV  595 (885)
T ss_pred             HHhccHHHHHHHhcCcccchH-HHHHHHHHHHHHHHhc
Confidence            66666555 3  789999997 7778888888877665

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=2.3e-23  Score=196.27  Aligned_cols=497  Identities=15%  Similarity=0.180  Sum_probs=365.2

Q ss_pred             HHhhhhHHhhhhcCchhH-HHHHHHHHHHHHHhhcChhHHHHhHHHHHHHhhc-----CCCCcchhhhhhhhhhhc----
Q 009975           18 AHVLLPPLETLCTVEETC-VRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAA-----GEWFTARVSACGLFHIAY----   87 (521)
Q Consensus        18 ~~~l~~~l~~l~~~~~~~-vR~~a~~~l~~i~~~~~~~~~~~~l~p~i~~~~~-----~~~~~~r~~~~~~~~~~~----   87 (521)
                      |+.++..+.....++.+. +++.+++++|-+|++++|+.+.+..-..+...++     +.+..+|.++.+.+....    
T Consensus       127 wp~li~~lv~nv~~~~~~~~k~~slealGyice~i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~  206 (859)
T KOG1241|consen  127 WPELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTK  206 (859)
T ss_pred             CHHHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHH
Confidence            677888887776666664 9999999999999999998655433333323222     446678888776543322    


Q ss_pred             -CCCChHHHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCc---hhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHH
Q 009975           88 -PSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP---AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAAL  163 (521)
Q Consensus        88 -~~~~~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l  163 (521)
                       ....+..++.+++..++..+.++.+||.+|..+|..++....+   ....+.+.++-...+.++++.|...+++.|..+
T Consensus       207 ~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsti  286 (859)
T KOG1241|consen  207 ANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTI  286 (859)
T ss_pred             HhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence             1223446888999999999999999999999999999876542   223344666666677889999999999999988


Q ss_pred             hhhcCh---------h------------hhhhhhHHHHHHhcC-------CCChHHHHHHHHHHHHHHHHhCCCccccch
Q 009975          164 GKLLEP---------Q------------DCVAHILPVIVNFSQ-------DKSWRVRYMVANQLYELCEAVGPEPTRMDL  215 (521)
Q Consensus       164 ~~~~~~---------~------------~~~~~l~~~l~~~~~-------d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l  215 (521)
                      ++.--+         +            ...++++|.+.+++.       |++|..-+++..+|.-++...+++.. +++
T Consensus       287 ceEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv-~~V  365 (859)
T KOG1241|consen  287 CEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIV-PHV  365 (859)
T ss_pred             HHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccch-hhh
Confidence            754111         0            112368888877552       46799999999999999988888776 589


Q ss_pred             HHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHH---HHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccCh----HH
Q 009975          216 VPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE---LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK----DA  288 (521)
Q Consensus       216 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~----~~  288 (521)
                      +|++.+.++.++|.-|.+|+.+++.+.....+.   ......+|.+..+..|++-.||..++++++++++.++.    ..
T Consensus       366 l~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~  445 (859)
T KOG1241|consen  366 LPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQE  445 (859)
T ss_pred             HHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHh
Confidence            999999999999999999999999998865554   34456788889999999999999999999999987754    33


Q ss_pred             HHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhch---h--------hHhhhHHHHHHHHhc--C-CChHHHHHHHHH
Q 009975          289 TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---D--------LLSQSLLPAIVELAE--D-RHWRVRLAIIEY  354 (521)
Q Consensus       289 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~---~--------~~~~~~~~~l~~~~~--~-~~~~vr~~~~~~  354 (521)
                      ....+++.+...++|. |.|-.++++++..+.+....   +        .+.+.++..+.....  | ..-..|.++.++
T Consensus       446 ~l~~~l~~l~~gL~De-Prva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeA  524 (859)
T KOG1241|consen  446 LLQSKLSALLEGLNDE-PRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEA  524 (859)
T ss_pred             hhhHHHHHHHHHhhhC-chHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHH
Confidence            3445677777777776 89999999999988765421   1        122334444443322  2 346789999999


Q ss_pred             hHHHHhhhChhhhH--HHHHHHHHH----HcC---------CCcHHHHHHHHHHHHHHHHHhCHHH--HHhhhHHHHHhh
Q 009975          355 IPLLASQLGVGFFD--DKLGALCMQ----WLQ---------DKVYSIRDAAANNLKRLAEEFGPEW--AMQHITPQVLEM  417 (521)
Q Consensus       355 l~~l~~~~~~~~~~--~~l~~~l~~----~l~---------d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~  417 (521)
                      |..+.+..+++.+.  ..+.+.++.    .++         +...+++...+.+|+.+...++.+.  ..+.++..+..+
T Consensus       525 LmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d~iM~lflri  604 (859)
T KOG1241|consen  525 LMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIREVSDQIMGLFLRI  604 (859)
T ss_pred             HHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHH
Confidence            99999998876432  222222222    222         1224456667778888888777642  457788888888


Q ss_pred             hcC-cchHHHHHHHHHHHHhhcccChHH--HhhcHHHHHHhhc-CCCCchHHHHHHHHHHHHHhhhchHH--HHhhHHHH
Q 009975          418 INN-PHYLYRMTILRAISLLAPVMGSEI--TCSRLLPVVINAS-KDRVPNIKFNVAKVLQSLIPIVDQSM--VEKTIRPC  491 (521)
Q Consensus       418 l~~-~~~~~r~~a~~~l~~l~~~~~~~~--~~~~il~~l~~~l-~d~~~~VR~~a~~~l~~~~~~~~~~~--~~~~~~~~  491 (521)
                      +++ ++..+.+.+..+++.++..+|..+  +.+.|.|++...+ +-....|=.+|...++.++..++.+.  +...+...
T Consensus       605 ~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~py~d~~mt~  684 (859)
T KOG1241|consen  605 FESKRSAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDILPYCDELMTV  684 (859)
T ss_pred             HcCCccccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence            888 456688999999999999999876  6789999999999 55677888899999999999887763  44666666


Q ss_pred             HHHhcCC--CCccHHHHHHHHHHHHHH
Q 009975          492 LVELTED--PDVDVRFFATQAIQSIDH  516 (521)
Q Consensus       492 l~~l~~D--~~~~vr~~a~~al~~l~~  516 (521)
                      |.+.++.  .+.+|+-...++++.|.-
T Consensus       685 Lvq~Lss~~~hR~vKP~IlS~FgDIAl  711 (859)
T KOG1241|consen  685 LVQCLSSPNLHRNVKPAILSVFGDIAL  711 (859)
T ss_pred             HHHHccCccccccccchHHHHHHHHHH
Confidence            6665444  377888888888887754

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=99.92  E-value=3.2e-21  Score=181.03  Aligned_cols=472  Identities=19%  Similarity=0.286  Sum_probs=342.4

Q ss_pred             cCchhHHHHHHHHHHHHHHhhcChhHHHHhHHHHHHHhhcCC-CCcchhhhhhhhhhhcC--CC--ChHHHHHHHHHHHH
Q 009975           30 TVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGE-WFTARVSACGLFHIAYP--SA--PDILKTELRSIYTQ  104 (521)
Q Consensus        30 ~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~p~i~~~~~~~-~~~~r~~~~~~~~~~~~--~~--~~~~~~~l~~~l~~  104 (521)
                      .+.|+-||....++++.++.+++-    +.++|++...+.+. ++..|..++...-.++.  ++  -+ ....++..+.+
T Consensus       486 dn~deYVRnttarafavvasalgi----p~llpfLkavc~SkkSwqaRhTgIkivqqIail~Gcsvlp-hl~~lv~ii~~  560 (1172)
T KOG0213|consen  486 DNKDEYVRNTTARAFAVVASALGI----PALLPFLKAVCGSKKSWQARHTGIKIVQQIAILSGCSVLP-HLKPLVKIIEH  560 (1172)
T ss_pred             ccccHHHHHHHHHHHHHHHHHhCc----HHHHHHHHHHhccccchhhhchhhHHHHHHHHHhcchhhh-hhHHHHHHHHH
Confidence            467889999999999999999873    47899999999876 66777666544333221  11  12 36778889999


Q ss_pred             hcCCCChHHHHHHHHhHHHHHHhhCc---hhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcChh---hhhhhhHH
Q 009975          105 LCQDDMPMVRRSAASNLGKFAATVEP---AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ---DCVAHILP  178 (521)
Q Consensus       105 l~~~~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~  178 (521)
                      .+.|.+..||.-++.++..+++..++   +.+...+.|++....+ .....-.+.+++++.+......+   -+..+++-
T Consensus       561 gl~De~qkVR~itAlalsalaeaa~Pygie~fDsVlkpLwkgir~-hrgk~laafLkAigyliplmd~eya~yyTrevml  639 (1172)
T KOG0213|consen  561 GLKDEQQKVRTITALALSALAEAATPYGIEQFDSVLKPLWKGIRQ-HRGKELAAFLKAIGYLIPLMDAEYASYYTREVML  639 (1172)
T ss_pred             hhcccchhhhhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHH-ccChHHHHHHHHHhhccccccHHHHHHhHHHHHH
Confidence            99999999999999999999988776   3344455555444332 22222333455555555444332   12233455


Q ss_pred             HHHHhcCCCChHHHHHHHHHHHHHHHHhCCCcc--ccc---------------------------------------hHH
Q 009975          179 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEPT--RMD---------------------------------------LVP  217 (521)
Q Consensus       179 ~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~--~~~---------------------------------------l~~  217 (521)
                      ++..=.+.++.+.++.+.+.+.+.+..-|-+..  ..+                                       ++.
T Consensus       640 il~rEf~sPDeemkkivLKVv~qcc~t~Gv~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~KvG~~~~v~  719 (1172)
T KOG0213|consen  640 ILIREFGSPDEEMKKIVLKVVKQCCATDGVEPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAAKVGSDPIVS  719 (1172)
T ss_pred             HHHHhhCCChHHHHHHHHHHHHHHhcccCCCHHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHHHHHHhCchHHHH
Confidence            555555666666666666666666554332211  111                                       233


Q ss_pred             HHHHhcCCChHHHHHHHHHhHHHHHhhhCH--------------------------------------------HHHHHh
Q 009975          218 AYVRLLRDNEAEVRIAAAGKVTKFCRILNP--------------------------------------------ELAIQH  253 (521)
Q Consensus       218 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~--------------------------------------------~~~~~~  253 (521)
                      -.+.-++|+.+..|+..+++...+...+|.                                            ..+.+.
T Consensus       720 R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~~lg~r~kpylpq  799 (1172)
T KOG0213|consen  720 RVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNALGGRVKPYLPQ  799 (1172)
T ss_pred             HHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHhhccccchHH
Confidence            333345677777777777777666655542                                            112333


Q ss_pred             hhHHHHHhccCCcHHHHHHHHHHHHccccc---cChHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchhhH--
Q 009975          254 ILPCVKELSSDSSQHVRSALASVIMGMAPL---LGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL--  328 (521)
Q Consensus       254 ~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~---~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~--  328 (521)
                      ++..+...++++++.||..++..++.++..   ++++....++--++...+..+.++|-...+.++..+...+|....  
T Consensus       800 i~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~km~p  879 (1172)
T KOG0213|consen  800 ICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTP  879 (1172)
T ss_pred             HHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccccccCC
Confidence            455556678899999999999999988765   466666667777788889999999999999999999988875443  


Q ss_pred             -hhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChhhhHHHHHHHH---HHHcCCCcHHHHHHHHHHHHHHHHHhCHH
Q 009975          329 -SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALC---MQWLQDKVYSIRDAAANNLKRLAEEFGPE  404 (521)
Q Consensus       329 -~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l---~~~l~d~~~~vr~~a~~~l~~l~~~~~~~  404 (521)
                       ...++|.+.-.+++....|....+..++.++...+.-.-...++.++   +.+|+.-+.++|.+|...+|.+++..|+.
T Consensus       880 Pi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~IakaIGPq  959 (1172)
T KOG0213|consen  880 PIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAKAIGPQ  959 (1172)
T ss_pred             ChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhcCHH
Confidence             25778888888899999999999999999997755432233444444   45567789999999999999999999964


Q ss_pred             HHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChHHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchH--
Q 009975          405 WAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--  482 (521)
Q Consensus       405 ~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~--  482 (521)
                          .++..|.+.++....+.|.+..-+++-+++.+|+-    .++|.++.-..-|..+|++..+++++.+.+..|..  
T Consensus       960 ----dVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pF----tVLPalmneYrtPe~nVQnGVLkalsf~Feyigemsk 1031 (1172)
T KOG0213|consen  960 ----DVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPF----TVLPALMNEYRTPEANVQNGVLKALSFMFEYIGEMSK 1031 (1172)
T ss_pred             ----HHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCch----hhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHHhh
Confidence                56778888888888888888888888888877743    47889998899999999999999999999988753  


Q ss_pred             HHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHH
Q 009975          483 MVEKTIRPCLVELTEDPDVDVRFFATQAIQSID  515 (521)
Q Consensus       483 ~~~~~~~~~l~~l~~D~~~~vr~~a~~al~~l~  515 (521)
                      .+.-.+.|.|...+.|.|...|..|..++..+.
T Consensus      1032 dYiyav~PlleDAlmDrD~vhRqta~~~I~Hl~ 1064 (1172)
T KOG0213|consen 1032 DYIYAVTPLLEDALMDRDLVHRQTAMNVIKHLA 1064 (1172)
T ss_pred             hHHHHhhHHHHHhhccccHHHHHHHHHHHHHHh
Confidence            556789999999999999999999999998764

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.91  E-value=1.6e-19  Score=170.67  Aligned_cols=492  Identities=18%  Similarity=0.175  Sum_probs=343.4

Q ss_pred             hhHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHHHhHHHHHHHhhcCC-CCcchhhh-hhhhhhhc------------
Q 009975           22 LPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGE-WFTARVSA-CGLFHIAY------------   87 (521)
Q Consensus        22 ~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~p~i~~~~~~~-~~~~r~~~-~~~~~~~~------------   87 (521)
                      +..|.+ .-++|+++|..|.+.|...+..-    +..++.-....+.+++ ....|..+ +.+-..+.            
T Consensus         4 ~~~le~-tlSpD~n~~~~Ae~~l~~~~~~n----f~~F~~~Ls~vl~n~~~~~~~R~~AGL~LKN~L~akd~~~k~~~~q   78 (859)
T KOG1241|consen    4 LELLEK-TLSPDQNVRKRAEKQLEQAQSQN----FPQFLVLLSEVLANDNSSDVARMAAGLQLKNSLTAKDPERKQQYQQ   78 (859)
T ss_pred             HHHHHH-HcCCCcchHHHHHHHHHHHHhcc----HHHHHHHHHHHHhccCCcHHHHHHHhHHHhhhhccCCHHHHHHHHH
Confidence            455666 44689999999999998887742    2222222233444443 34555444 33322222            


Q ss_pred             --CCCChHHHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCCChh-HHHHHHHHHHHHh
Q 009975           88 --PSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDS-VRLLAVEGCAALG  164 (521)
Q Consensus        88 --~~~~~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~-vr~~a~~~l~~l~  164 (521)
                        -.++.++++.+...+...+..+.|..+..|..+++.++..--+...|+.+++.+..-..++.+. +|..+++++|.++
T Consensus        79 RWl~l~~e~reqVK~~il~tL~~~ep~~~s~Aaq~va~IA~~ElP~n~wp~li~~lv~nv~~~~~~~~k~~slealGyic  158 (859)
T KOG1241|consen   79 RWLQLPAEIREQVKNNILRTLGSPEPRRPSSAAQCVAAIACIELPQNQWPELIVTLVSNVGEEQASMVKESSLEALGYIC  158 (859)
T ss_pred             HHHcCCHHHHHHHHHHHHHHcCCCCCCccchHHHHHHHHHHhhCchhhCHHHHHHHHHhcccccchHHHHHHHHHHHHHH
Confidence              2345567888888899989999999999999999999988777788999999999888877664 9999999999999


Q ss_pred             hhcChhhhh---hhhHHHHHH-hc-CCCChHHHHHHHHHHHHHHHH----hCCCccccchHHHHHHhcCCChHHHHHHHH
Q 009975          165 KLLEPQDCV---AHILPVIVN-FS-QDKSWRVRYMVANQLYELCEA----VGPEPTRMDLVPAYVRLLRDNEAEVRIAAA  235 (521)
Q Consensus       165 ~~~~~~~~~---~~l~~~l~~-~~-~d~~~~vR~~~~~~l~~i~~~----~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~  235 (521)
                      +.+.++...   +.++-.+.. .. ..++..||.++..+|..-...    +..+...+.++....+..+.++.++|.+|+
T Consensus       159 e~i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~  238 (859)
T KOG1241|consen  159 EDIDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDEEIQVAAF  238 (859)
T ss_pred             ccCCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcHHHHHHHH
Confidence            999887433   334443333 32 357889999999987654443    334444466777777788899999999999


Q ss_pred             HhHHHHHhhhCH--HHHH-HhhhHHHHHhccCCcHHHHHHHHHHHHcccccc-------Ch------H--------HHHH
Q 009975          236 GKVTKFCRILNP--ELAI-QHILPCVKELSSDSSQHVRSALASVIMGMAPLL-------GK------D--------ATIE  291 (521)
Q Consensus       236 ~~l~~l~~~~~~--~~~~-~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~-------~~------~--------~~~~  291 (521)
                      .+|..+....=.  +.+. +.+++.-.....+.++.|...+++..+.++..-       |+      .        ....
T Consensus       239 ~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~  318 (859)
T KOG1241|consen  239 QCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQ  318 (859)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHh
Confidence            999998886421  1111 224444455566888889999988888665311       10      0        0134


Q ss_pred             hHHHHHHHhhc-------CCChHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhCh
Q 009975          292 QLLPIFLSLLK-------DEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV  364 (521)
Q Consensus       292 ~l~~~l~~~l~-------d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~  364 (521)
                      .++|.+++++.       |+++..-++|-.+|.-+++..|.+.+ +.++|.+.+-++.++|+-|.+++-+++.+.....+
T Consensus       319 ~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv-~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~  397 (859)
T KOG1241|consen  319 DVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIV-PHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEP  397 (859)
T ss_pred             HhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccch-hhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCch
Confidence            78999988874       23567889999999999998886655 78999999999999999999999999999877655


Q ss_pred             hh---hHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCH----HHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhh
Q 009975          365 GF---FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP----EWAMQHITPQVLEMINNPHYLYRMTILRAISLLA  437 (521)
Q Consensus       365 ~~---~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~  437 (521)
                      ..   .....+|.+..++.|+.-.||.++..+++.+++.+..    ......+++.+..-++| .+++-..+++++..++
T Consensus       398 ~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~D-ePrva~N~CWAf~~La  476 (859)
T KOG1241|consen  398 DKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLND-EPRVASNVCWAFISLA  476 (859)
T ss_pred             hhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhh-CchHHHHHHHHHHHHH
Confidence            43   3455788999999999999999999999999987643    22334455555655555 5788889999999988


Q ss_pred             cccCh-----------HHHhhcHHHHHHhhcC--C-CCchHHHHHHHHHHHHHhhhchHHHH------hhHHHHHHHhc-
Q 009975          438 PVMGS-----------EITCSRLLPVVINASK--D-RVPNIKFNVAKVLQSLIPIVDQSMVE------KTIRPCLVELT-  496 (521)
Q Consensus       438 ~~~~~-----------~~~~~~il~~l~~~l~--d-~~~~VR~~a~~~l~~~~~~~~~~~~~------~~~~~~l~~l~-  496 (521)
                      +++..           ..+.+.++..++..-+  | ...+.|.+|..+|..+++..+.+.+.      ..++.-|.... 
T Consensus       477 ea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~  556 (859)
T KOG1241|consen  477 EAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEKLDQTIS  556 (859)
T ss_pred             HHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            64321           1133444444544432  2 35679999999999999876654331      12222222111 


Q ss_pred             --------CCCCccHHHHHHHHHHHHHHhhcc
Q 009975          497 --------EDPDVDVRFFATQAIQSIDHVMMS  520 (521)
Q Consensus       497 --------~D~~~~vr~~a~~al~~l~~~~~~  520 (521)
                              .+.-.++....+.+++++-.++++
T Consensus       557 ~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~  588 (859)
T KOG1241|consen  557 SQILSLADRAQLNELQSLLCNTLQSIIRKVGS  588 (859)
T ss_pred             HHhccHhhHHHHHHHHHHHHHHHHHHHHHccc
Confidence                    122446677777888888777765

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=99.90  E-value=8.5e-20  Score=171.63  Aligned_cols=486  Identities=15%  Similarity=0.134  Sum_probs=350.4

Q ss_pred             hhHHhhhhHHhhhhcCchhHHHHHHHHHHHHHHhhcCh---hHHHHhHHHHHHHhhcCCCCcchhhhhhhhhhhcCCCCh
Q 009975           16 EHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRE---SDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPD   92 (521)
Q Consensus        16 ~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~---~~~~~~l~p~i~~~~~~~~~~~r~~~~~~~~~~~~~~~~   92 (521)
                      .|+..++..+...+.|+...||--+..++..+++..+|   +.+.+.+-|+.....++-. ..-.+.+..++-+.+-..+
T Consensus       549 phl~~lv~ii~~gl~De~qkVR~itAlalsalaeaa~Pygie~fDsVlkpLwkgir~hrg-k~laafLkAigyliplmd~  627 (1172)
T KOG0213|consen  549 PHLKPLVKIIEHGLKDEQQKVRTITALALSALAEAATPYGIEQFDSVLKPLWKGIRQHRG-KELAAFLKAIGYLIPLMDA  627 (1172)
T ss_pred             hhhHHHHHHHHHhhcccchhhhhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHccC-hHHHHHHHHHhhccccccH
Confidence            57777899999999999999999999999999998776   4444455555543333211 1223334555666655544


Q ss_pred             H----HHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCch--hhHHHHHH---------------------------
Q 009975           93 I----LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPA--HLKTDIMS---------------------------  139 (521)
Q Consensus        93 ~----~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~---------------------------  139 (521)
                      +    ...+++-.+..-..++|.+.++.+.+.+..++...+-+  ....+++|                           
T Consensus       628 eya~yyTrevmlil~rEf~sPDeemkkivLKVv~qcc~t~Gv~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~  707 (1172)
T KOG0213|consen  628 EYASYYTREVMLILIREFGSPDEEMKKIVLKVVKQCCATDGVEPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVE  707 (1172)
T ss_pred             HHHHHhHHHHHHHHHHhhCCChHHHHHHHHHHHHHHhcccCCCHHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHH
Confidence            4    22333333444345667777777777777766554321  11111111                           


Q ss_pred             ------------HHHHhhcCCChhHHHHHHHHHHHHhhhcCh--------------------------------------
Q 009975          140 ------------IFEDLTQDDQDSVRLLAVEGCAALGKLLEP--------------------------------------  169 (521)
Q Consensus       140 ------------~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~--------------------------------------  169 (521)
                                  -+..-+.|+.+..|....++...+...++.                                      
T Consensus       708 ia~KvG~~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~  787 (1172)
T KOG0213|consen  708 IAAKVGSDPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVN  787 (1172)
T ss_pred             HHHHhCchHHHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHH
Confidence                        111123566677777777777666554431                                      


Q ss_pred             ------hhhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCc---cccchHHHHHHhcCCChHHHHHHHHHhHHH
Q 009975          170 ------QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP---TRMDLVPAYVRLLRDNEAEVRIAAAGKVTK  240 (521)
Q Consensus       170 ------~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~---~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~  240 (521)
                            +.+.+.|...++..++++++.||..++..++.++..++...   ...++-.++.+.+..+.++|--..+.++..
T Consensus       788 ~lg~r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLgsILgAika  867 (1172)
T KOG0213|consen  788 ALGGRVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKA  867 (1172)
T ss_pred             HHhhccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHH
Confidence                  01122344455667889999999999999999998776432   234566778888889999999988888888


Q ss_pred             HHhhhCHHH---HHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccChHHHHHhHHHH---HHHhhcCCChHHHHHHHH
Q 009975          241 FCRILNPEL---AIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPI---FLSLLKDEFPDVRLNIIS  314 (521)
Q Consensus       241 l~~~~~~~~---~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~---l~~~l~d~~~~vr~~a~~  314 (521)
                      +...+|...   -...++|.+...+.+++.+|...++..++.|+..-++.....+++.+   ++.+++..+.++|++|.+
T Consensus       868 I~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~n  947 (1172)
T KOG0213|consen  868 IVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVN  947 (1172)
T ss_pred             HHHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            888875431   13457788888889999999999999999998655443333344444   345677889999999999


Q ss_pred             HHHHhhhhhchhhHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChhhhHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q 009975          315 KLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNL  394 (521)
Q Consensus       315 ~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l  394 (521)
                      +++.+++.+|+..    ++..+.+-++....+.|....-+++.+++.+|+-    .++|.+++-..-++..|+...++++
T Consensus       948 TfG~IakaIGPqd----VLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pF----tVLPalmneYrtPe~nVQnGVLkal 1019 (1172)
T KOG0213|consen  948 TFGYIAKAIGPQD----VLATLLNNLKVQERQNRVCTTVAIAIVAETCGPF----TVLPALMNEYRTPEANVQNGVLKAL 1019 (1172)
T ss_pred             hhhHHHHhcCHHH----HHHHHHhcchHHHHHhchhhhhhhhhhhhhcCch----hhhHHHHhhccCchhHHHHhHHHHH
Confidence            9999999999854    5667777666667777777777788888888764    3788888888889999999999999


Q ss_pred             HHHHHHhCHH--HHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhc---ccChHHHhhcHHHHHHhhcCCCCchHHHHHH
Q 009975          395 KRLAEEFGPE--WAMQHITPQVLEMINNPHYLYRMTILRAISLLAP---VMGSEITCSRLLPVVINASKDRVPNIKFNVA  469 (521)
Q Consensus       395 ~~l~~~~~~~--~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~---~~~~~~~~~~il~~l~~~l~d~~~~VR~~a~  469 (521)
                      .-+.+..|..  .+...+.|.|.+.+.|.+.-.|+.+..++.+++-   ..|.+...-++++.++.-.-+++|.|.++..
T Consensus      1020 sf~FeyigemskdYiyav~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~g~g~eda~iHLLN~iWpNIle~sPhviqa~~ 1099 (1172)
T KOG0213|consen 1020 SFMFEYIGEMSKDYIYAVTPLLEDALMDRDLVHRQTAMNVIKHLALGVPGTGCEDALIHLLNLIWPNILETSPHVIQAFD 1099 (1172)
T ss_pred             HHHHHHHHHHhhhHHHHhhHHHHHhhccccHHHHHHHHHHHHHHhcCCCCcCcHHHHHHHHHHhhhhhcCCChHHHHHHH
Confidence            9999887753  2345688999999999999999999999999985   4566777788999999999999999999999


Q ss_pred             HHHHHHHhhhchHHHHhhHHHHHHHhcCCCCccHHHHHHHHHHHH
Q 009975          470 KVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSI  514 (521)
Q Consensus       470 ~~l~~~~~~~~~~~~~~~~~~~l~~l~~D~~~~vr~~a~~al~~l  514 (521)
                      .++..+...+|+..+..+++..|    =.|...||..-+..+.++
T Consensus      1100 e~~eg~r~~Lg~~~~~~Y~~QGL----FHParkVR~~yw~vyn~m 1140 (1172)
T KOG0213|consen 1100 EAMEGLRVALGPQAMLKYCLQGL----FHPARKVRKRYWTVYNSM 1140 (1172)
T ss_pred             HHHHHHHHHhchHHHHHHHHHhc----cCcHHHHHHHHHHHHHhH
Confidence            99999999999877666655443    346778888777776655

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.90  E-value=2.1e-20  Score=187.74  Aligned_cols=473  Identities=14%  Similarity=0.131  Sum_probs=353.8

Q ss_pred             hhhhHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHHHhHHHHHHHhhcCCCCcchhhhhhhhhhhcCCCChHHHHHHH
Q 009975           20 VLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELR   99 (521)
Q Consensus        20 ~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~p~i~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~l~   99 (521)
                      .+++.+.+++.++|...|+.+--.+..+...-+ + ..-.....+.+=..+++..+|..|+..++.+.   .++..+.+.
T Consensus        42 ~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~-~-~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~---~~~~~~~l~  116 (526)
T PF01602_consen   42 FLFMEVIKLISSKDLELKRLGYLYLSLYLHEDP-E-LLILIINSLQKDLNSPNPYIRGLALRTLSNIR---TPEMAEPLI  116 (526)
T ss_dssp             STHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSH-H-HHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH----SHHHHHHHH
T ss_pred             hHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcch-h-HHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhc---ccchhhHHH
Confidence            455566677778899999988877777776533 2 23345555655566777889999998888766   566788899


Q ss_pred             HHHHHhcCCCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcChh---hhhhhh
Q 009975          100 SIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ---DCVAHI  176 (521)
Q Consensus       100 ~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~l  176 (521)
                      +.+.+++.|++|.||+.|+.++..+.+..+...... +.+.+.+++.|+++.|+..|+.++..+  ...++   ...+.+
T Consensus       117 ~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i--~~~~~~~~~~~~~~  193 (526)
T PF01602_consen  117 PDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDE-LIPKLKQLLSDKDPSVVSAALSLLSEI--KCNDDSYKSLIPKL  193 (526)
T ss_dssp             HHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHH--HCTHHHHTTHHHHH
T ss_pred             HHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHH-HHHHHhhhccCCcchhHHHHHHHHHHH--ccCcchhhhhHHHH
Confidence            999999999999999999999999998755322222 789999999999999999999999998  22222   233445


Q ss_pred             HHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCccc--cchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhh
Q 009975          177 LPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR--MDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHI  254 (521)
Q Consensus       177 ~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~--~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~  254 (521)
                      .+.+.+.+.+.++-.+..+++.+..++..-  ....  ..+++.+..++++.++.|...++.++..+...   ......+
T Consensus       194 ~~~L~~~l~~~~~~~q~~il~~l~~~~~~~--~~~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~---~~~~~~~  268 (526)
T PF01602_consen  194 IRILCQLLSDPDPWLQIKILRLLRRYAPME--PEDADKNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPS---PELLQKA  268 (526)
T ss_dssp             HHHHHHHHTCCSHHHHHHHHHHHTTSTSSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS---HHHHHHH
T ss_pred             HHHhhhcccccchHHHHHHHHHHHhcccCC--hhhhhHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcc---hHHHHhh
Confidence            555566668888888888888777554211  1112  35888888888888899999888888765442   2355678


Q ss_pred             hHHHHHhccCCcHHHHHHHHHHHHccccccChHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchhhHhhhHHH
Q 009975          255 LPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLP  334 (521)
Q Consensus       255 ~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~  334 (521)
                      ++.+..++.++++.+|..++.++..++...++...  .....+..+..+++..+|..++..+..++..-..    ..+++
T Consensus       269 ~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v~--~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~~n~----~~Il~  342 (526)
T PF01602_consen  269 INPLIKLLSSSDPNVRYIALDSLSQLAQSNPPAVF--NQSLILFFLLYDDDPSIRKKALDLLYKLANESNV----KEILD  342 (526)
T ss_dssp             HHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHHG--THHHHHHHHHCSSSHHHHHHHHHHHHHH--HHHH----HHHHH
T ss_pred             HHHHHHHhhcccchhehhHHHHHHHhhcccchhhh--hhhhhhheecCCCChhHHHHHHHHHhhcccccch----hhHHH
Confidence            88899999999999999999999999876633322  3333444555688999999999999998864332    55777


Q ss_pred             HHHHHhcC-CChHHHHHHHHHhHHHHhhhChhhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHHHHHhhhHHH
Q 009975          335 AIVELAED-RHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQ  413 (521)
Q Consensus       335 ~l~~~~~~-~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~  413 (521)
                      .+.+.+.+ .+..+|..++..++.++...++.  .++.++.+++++......+...+...+..+......  ....++..
T Consensus       343 eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~--~~~~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~--~~~~~l~~  418 (526)
T PF01602_consen  343 ELLKYLSELSDPDFRRELIKAIGDLAEKFPPD--AEWYVDTLLKLLEISGDYVSNEIINVIRDLLSNNPE--LREKILKK  418 (526)
T ss_dssp             HHHHHHHHC--HHHHHHHHHHHHHHHHHHGSS--HHHHHHHHHHHHHCTGGGCHCHHHHHHHHHHHHSTT--THHHHHHH
T ss_pred             HHHHHHHhccchhhhhhHHHHHHHHHhccCch--HHHHHHHHHHhhhhccccccchHHHHHHHHhhcChh--hhHHHHHH
Confidence            77777744 47789999999999999888554  466778888888888888888888888887765432  13446677


Q ss_pred             HHhhhcC-cchHHHHHHHHHHHHhhcccChHHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchHHHHhhHHHHH
Q 009975          414 VLEMINN-PHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCL  492 (521)
Q Consensus       414 l~~~l~~-~~~~~r~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~~~~~~~~l  492 (521)
                      +.+.+.+ .+...+..+++.+|..+...........++..+.....+..+.||...+.++.++....+.+...+.+...+
T Consensus       419 L~~~l~~~~~~~~~~~~~wilGEy~~~~~~~~~~~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~~~~~~~~~~i~~~~  498 (526)
T PF01602_consen  419 LIELLEDISSPEALAAAIWILGEYGELIENTESAPDILRSLIENFIEESPEVKLQILTALAKLFKRNPENEVQNEILQFL  498 (526)
T ss_dssp             HHHHHTSSSSHHHHHHHHHHHHHHCHHHTTTTHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHSCSTTHHHHHHHHH
T ss_pred             HHHHHHHhhHHHHHHHHHhhhcccCCcccccccHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhCCchhhHHHHHHHH
Confidence            7776655 567889999999999998776511456778888888888889999999999999998876655566888888


Q ss_pred             HHhcC--CCCccHHHHHHHHHHHHH
Q 009975          493 VELTE--DPDVDVRFFATQAIQSID  515 (521)
Q Consensus       493 ~~l~~--D~~~~vr~~a~~al~~l~  515 (521)
                      .++.+  +.+.+||..|..-+.-+.
T Consensus       499 ~~~~~~~s~~~evr~Ra~~y~~ll~  523 (526)
T PF01602_consen  499 LSLATEDSSDPEVRDRAREYLRLLN  523 (526)
T ss_dssp             HCHHHHS-SSHHHHHHHHHHHHHHH
T ss_pred             HHHhccCCCCHHHHHHHHHHHHHHc
Confidence            88877  889999999998776554

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=99.89  E-value=1.3e-19  Score=167.05  Aligned_cols=473  Identities=17%  Similarity=0.220  Sum_probs=334.4

Q ss_pred             cCchhHHHHHHHHHHHHHHhhcChhHHHHhHHHHHHHhhcCC-CCcchhhhhhhhhhhcCCCC---hHHHHHHHHHHHHh
Q 009975           30 TVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGE-WFTARVSACGLFHIAYPSAP---DILKTELRSIYTQL  105 (521)
Q Consensus        30 ~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~p~i~~~~~~~-~~~~r~~~~~~~~~~~~~~~---~~~~~~l~~~l~~l  105 (521)
                      .+.|+-||...-++.+.++++++-    ++++|++..++.+. ++..|..++...-.+...+.   -.....++..+-++
T Consensus       291 ~~~deYVRnvt~ra~~vva~algv----~~llpfl~a~c~SrkSw~aRhTgiri~qqI~~llG~s~l~hl~~l~~ci~~~  366 (975)
T COG5181         291 TSKDEYVRNVTGRAVGVVADALGV----EELLPFLEALCGSRKSWEARHTGIRIAQQICELLGRSRLSHLGPLLKCISKL  366 (975)
T ss_pred             ccccHHHHHHHHHHHHHHHHhhCc----HHHHHHHHHHhcCccchhhhchhhHHHHHHHHHhCccHHhhhhhHHHHHHHH
Confidence            467889999999999999999884    57899999998865 66777766655443332111   11356788889999


Q ss_pred             cCCCChHHHHHHHHhHHHHHHhhCc---hhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcChhh---hhhhhHHH
Q 009975          106 CQDDMPMVRRSAASNLGKFAATVEP---AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQD---CVAHILPV  179 (521)
Q Consensus       106 ~~~~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~---~~~~l~~~  179 (521)
                      +.|.+..||-.++.++..+++..++   +.+...+.|++....+. ....-.+.+++.+.+...+.++-   .......+
T Consensus       367 l~D~~~~vRi~tA~alS~lae~~~Pygie~fd~vl~pLw~g~~~h-rgk~l~sfLkA~g~iiplm~peYa~h~tre~m~i  445 (975)
T COG5181         367 LKDRSRFVRIDTANALSYLAELVGPYGIEQFDEVLCPLWEGASQH-RGKELVSFLKAMGFIIPLMSPEYACHDTREHMEI  445 (975)
T ss_pred             hhccceeeeehhHhHHHHHHHhcCCcchHHHHHHHHHHHHHHHhc-CCchHHHHHHHhccccccCChHhhhhhHHHHHHH
Confidence            9999999999999999999998876   34445555655544332 22222233344444444333321   11223333


Q ss_pred             HHHhcCCCC----------------------hHHHHHHHH-HHHHHHHH--hCC----------------CccccchHHH
Q 009975          180 IVNFSQDKS----------------------WRVRYMVAN-QLYELCEA--VGP----------------EPTRMDLVPA  218 (521)
Q Consensus       180 l~~~~~d~~----------------------~~vR~~~~~-~l~~i~~~--~~~----------------~~~~~~l~~~  218 (521)
                      +...+++++                      |..|..+.- .+..+-..  .++                ....+.+..-
T Consensus       446 v~ref~spdeemkk~~l~v~~~C~~v~~~tp~~lr~~v~pefF~~fw~rr~A~dr~~~k~v~~ttvilAk~~g~~~v~~k  525 (975)
T COG5181         446 VFREFKSPDEEMKKDLLVVERICDKVGTDTPWKLRDQVSPEFFSPFWRRRSAGDRRSYKQVVLTTVILAKMGGDPRVSRK  525 (975)
T ss_pred             HHHHhCCchhhcchhHHHHHHHHhccCCCCHHHHHHhhcHHhhchHHHhhhcccccccceeehhHHHHHHHcCChHHHHH
Confidence            333333333                      333333221 11111110  000                0011345666


Q ss_pred             HHHhcCCChHHHHHHHHHhHHHHHhhhCHH--------------------------------------------HHHHhh
Q 009975          219 YVRLLRDNEAEVRIAAAGKVTKFCRILNPE--------------------------------------------LAIQHI  254 (521)
Q Consensus       219 l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--------------------------------------------~~~~~~  254 (521)
                      +.+..+|+....|..++.+...+...+|..                                            .+...+
T Consensus       526 il~~~~De~ep~r~m~a~~vsri~~~lg~~~~dErleerl~d~il~Afqeq~~t~~~il~~f~tv~vsl~~r~kp~l~~i  605 (975)
T COG5181         526 ILEYYSDEPEPYRKMNAGLVSRIFSRLGRLGFDERLEERLYDSILNAFQEQDTTVGLILPCFSTVLVSLEFRGKPHLSMI  605 (975)
T ss_pred             HHhhccCCcchhhhhhhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhccccccEEEecccceeeehhhccCcchHHH
Confidence            677778887778888887777666655421                                            122335


Q ss_pred             hHHHHHhccCCcHHHHHHHHHHHHccccc---cChHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchhhH---
Q 009975          255 LPCVKELSSDSSQHVRSALASVIMGMAPL---LGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL---  328 (521)
Q Consensus       255 ~~~l~~~~~d~~~~vr~~~~~~l~~i~~~---~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~---  328 (521)
                      +..+..++.++.+.+|..++..++.++..   +|+.....++-.++...+....++|-...+.++..+....+....   
T Consensus       606 vStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~mqpP  685 (975)
T COG5181         606 VSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLGEDYPEVLGSILKAICSIYSVHRFRSMQPP  685 (975)
T ss_pred             HHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhcccccCCc
Confidence            55667778899999999999998887654   466666677778888889999999999999999988877664422   


Q ss_pred             hhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChhhhHHHHHHHHH---HHcCCCcHHHHHHHHHHHHHHHHHhCHHH
Q 009975          329 SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCM---QWLQDKVYSIRDAAANNLKRLAEEFGPEW  405 (521)
Q Consensus       329 ~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~---~~l~d~~~~vr~~a~~~l~~l~~~~~~~~  405 (521)
                      ...++|.+...+.++...+....+..++.++...+...-...++.+++   ..|+.-+.++|.+|...+|.+.+..|+  
T Consensus       686 i~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiGP--  763 (975)
T COG5181         686 ISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRAIGP--  763 (975)
T ss_pred             hhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcCH--
Confidence            257788888888899999999999999999877654322333444443   456778999999999999999999996  


Q ss_pred             HHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChHHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchH--H
Q 009975          406 AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--M  483 (521)
Q Consensus       406 ~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~--~  483 (521)
                        +.++..|.+.++....+.|.+..-+++-+++.+|+-    .++|.+..-...|..+|++..++++..+.+..|..  .
T Consensus       764 --qdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpf----sVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~d  837 (975)
T COG5181         764 --QDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGPF----SVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASLD  837 (975)
T ss_pred             --HHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCch----hhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHHH
Confidence              456778888888888888988888899898888853    47889999899999999999999999999988865  4


Q ss_pred             HHhhHHHHHHHhcCCCCccHHHHHHHHHHHHH
Q 009975          484 VEKTIRPCLVELTEDPDVDVRFFATQAIQSID  515 (521)
Q Consensus       484 ~~~~~~~~l~~l~~D~~~~vr~~a~~al~~l~  515 (521)
                      +.-.+.|.|...+.|.|+..|..|...+..+.
T Consensus       838 Yvy~itPlleDAltDrD~vhRqta~nvI~Hl~  869 (975)
T COG5181         838 YVYSITPLLEDALTDRDPVHRQTAMNVIRHLV  869 (975)
T ss_pred             HHHHhhHHHHhhhcccchHHHHHHHHHHHHHh
Confidence            55789999999999999999999999988664

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=99.89  E-value=5.7e-19  Score=164.93  Aligned_cols=482  Identities=15%  Similarity=0.087  Sum_probs=350.2

Q ss_pred             hhHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHHHhHHHHHHHhhcCC-CCcchhhhhhhhhhhcCCCChH--HHHHH
Q 009975           22 LPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGE-WFTARVSACGLFHIAYPSAPDI--LKTEL   98 (521)
Q Consensus        22 ~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~p~i~~~~~~~-~~~~r~~~~~~~~~~~~~~~~~--~~~~l   98 (521)
                      ++.+-.-..|+.+.+|..-.++.......-+.+.+ ..+.|...+..+.. +...|..-..+.+....++...  ....+
T Consensus        19 ~~~~~~~g~d~~~~v~~~ml~a~~~~~~~~~~~~v-~~l~~~~~~~l~~~~~~~~~~~~~v~~~~~a~~~~~~d~~~~~~   97 (569)
T KOG1242|consen   19 LLFLVSAGEDRRIDVRGNMLEAGEAAINQHGDQNV-LNLKPCFEQRLNSLHNDNLRNNVVVLEGTLAFHLQIVDPRPISI   97 (569)
T ss_pred             ceeecccCCCcchhhHHhHHHHHHHHHHhhhHHHH-HHHHHHHHHHhccchhHHHhhhhHHHHHHHHHhccccCcchhHH
Confidence            34443334688889999888888887777776655 57788887766643 4455655566666665554322  24456


Q ss_pred             HHHHHHhcCCCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcChhh-hhhhhH
Q 009975           99 RSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQD-CVAHIL  177 (521)
Q Consensus        99 ~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~-~~~~l~  177 (521)
                      +..+.+....+++.+|++...++..+...... .....+++.+.+++......-|..+...+..+....+-+. ....++
T Consensus        98 ~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~-~~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~~~~l  176 (569)
T KOG1242|consen   98 IEILLEELDTPSKSVQRAVSTCLPPLVVLSKG-LSGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIESLKEFGFL  176 (569)
T ss_pred             HHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhc-cCHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHhhhhhhhHH
Confidence            66677777788999999999999988765543 3456677788888887777778888777777766654332 344578


Q ss_pred             HHHHHhcCCCChHHHH-HHHHHHHHHHHHhCCCc--cccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhh
Q 009975          178 PVIVNFSQDKSWRVRY-MVANQLYELCEAVGPEP--TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHI  254 (521)
Q Consensus       178 ~~l~~~~~d~~~~vR~-~~~~~l~~i~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~  254 (521)
                      ..+.+...|.....|+ .+..++......+|...  ..-.++|.+.....|....||.+|..+...+...++.......+
T Consensus       177 ~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~ll  256 (569)
T KOG1242|consen  177 DNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKLLL  256 (569)
T ss_pred             HHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhHhh
Confidence            8888888886665444 46666666666666432  22456777777788999999999999999999988776654434


Q ss_pred             hHHHHHhccCCcHHHHHHHHHHHHccccccChH--HHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchhhHhhhH
Q 009975          255 LPCVKELSSDSSQHVRSALASVIMGMAPLLGKD--ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSL  332 (521)
Q Consensus       255 ~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~  332 (521)
                      .+.+..+. +..|+.+.++++.++.++.+-+..  .....++|.+...+.|..++||.++..++..++..+....+ ..+
T Consensus       257 psll~~l~-~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI-~~~  334 (569)
T KOG1242|consen  257 PSLLGSLL-EAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDI-QKI  334 (569)
T ss_pred             hhhHHHHH-HHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHH-HHH
Confidence            44444444 449999999999999888777663  35678999999999999999999999999999998886665 788


Q ss_pred             HHHHHHHhcCCChHHHHHHHHHhH-HHHhhhChhhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHH----HHH
Q 009975          333 LPAIVELAEDRHWRVRLAIIEYIP-LLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE----WAM  407 (521)
Q Consensus       333 ~~~l~~~~~~~~~~vr~~~~~~l~-~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~----~~~  407 (521)
                      +|.+.+.+.|+...+..+.-.... .++..+.. ...+.++|++.+.+.+.+...++.++..++.++.-....    .+.
T Consensus       335 ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~-psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl  413 (569)
T KOG1242|consen  335 IPTLLDALADPSCYTPECLDSLGATTFVAEVDA-PSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFL  413 (569)
T ss_pred             HHHHHHHhcCcccchHHHHHhhcceeeeeeecc-hhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhH
Confidence            999999999998665543221111 12222222 335779999999999999999999999999999877322    345


Q ss_pred             hhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChHHHhhcHHHHHHhhcCCCCchH-HHHHHHHHHHHHhhhchHHHHh
Q 009975          408 QHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNI-KFNVAKVLQSLIPIVDQSMVEK  486 (521)
Q Consensus       408 ~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~V-R~~a~~~l~~~~~~~~~~~~~~  486 (521)
                      ..++|.+...+.++.+.+|..+..+++.+.+..|...+ ....|.+...+.+....+ |..++..++.+...++.+.+..
T Consensus       414 ~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~~f-~d~~p~l~e~~~~~k~~~~~~g~aq~l~evl~~~~v~~~~~  492 (569)
T KOG1242|consen  414 PSLLPGLKENLDDAVPEVRAVAARALGALLERLGEVSF-DDLIPELSETLTSEKSLVDRSGAAQDLSEVLAGLGVEKVED  492 (569)
T ss_pred             HHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhhcc-cccccHHHHhhccchhhhhhHHHhhhHHHHHhcccchHHHH
Confidence            77888888889999999999999999999999888776 788899988887765444 8899999999998887776644


Q ss_pred             hHHHHHHHhcC-CCCccHHHHHHH
Q 009975          487 TIRPCLVELTE-DPDVDVRFFATQ  509 (521)
Q Consensus       487 ~~~~~l~~l~~-D~~~~vr~~a~~  509 (521)
                      .+-..+....+ ..++.+|....+
T Consensus       493 ~~~~~~a~~~~~~~~~~~~dg~~~  516 (569)
T KOG1242|consen  493 ILPEILANASSVLIDERIRDGVIW  516 (569)
T ss_pred             HHHHHHHHHhhccchhhhccCeee
Confidence            44333333333 334445544333

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=99.89  E-value=2.5e-18  Score=166.02  Aligned_cols=501  Identities=16%  Similarity=0.202  Sum_probs=326.8

Q ss_pred             hhHHhhhhHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHHHhHHHHHHHhhcCCCCcchhhhhhhhhhhc---C----
Q 009975           16 EHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAY---P----   88 (521)
Q Consensus        16 ~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~p~i~~~~~~~~~~~r~~~~~~~~~~~---~----   88 (521)
                      +..+.+...+.++++|.++.|+..|+++++-+...++.++++..+-.+...+..+.....-.+++.+...+.   +    
T Consensus        43 dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~  122 (1233)
T KOG1824|consen   43 DSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLETIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSS  122 (1233)
T ss_pred             cchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCcccc
Confidence            344567888889999999999999999999999999988887666666666555544333345555443333   2    


Q ss_pred             CCChHHHHHHHHHHHHhcC--CCChHHHHHHHHhHHHHHHhhCc--hhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHh
Q 009975           89 SAPDILKTELRSIYTQLCQ--DDMPMVRRSAASNLGKFAATVEP--AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALG  164 (521)
Q Consensus        89 ~~~~~~~~~l~~~l~~l~~--~~~~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~  164 (521)
                      .....+.+.+.|.+.....  .+..-++-.++..++.+...+|.  ..++..++..+...+..+...||+.++.+++.++
T Consensus       123 ~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la  202 (1233)
T KOG1824|consen  123 FLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLA  202 (1233)
T ss_pred             ccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHH
Confidence            1223366777777766543  33445888888888888888775  3477778888888888889999999999999999


Q ss_pred             hhcChhhhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCcc--ccchHHHHHHhc---CCChHHHHHHHHHhHH
Q 009975          165 KLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPT--RMDLVPAYVRLL---RDNEAEVRIAAAGKVT  239 (521)
Q Consensus       165 ~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~--~~~l~~~l~~~l---~d~~~~vr~~a~~~l~  239 (521)
                      ...+.+.+..-+-.++..+.+..+...-+..+++++.+++..|....  .+.++|.+.+++   +.++++.|+.++++++
T Consensus       203 ~~~~~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale  282 (1233)
T KOG1824|consen  203 SSCNRDLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALE  282 (1233)
T ss_pred             HhcCHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHH
Confidence            99887755555555555666666766677788999999999887543  367899999988   6677899999999999


Q ss_pred             HHHhhhCHHH--HHHhhhHHHHHhc----------------------------------cCCcHHHHHHHHHHHHccccc
Q 009975          240 KFCRILNPEL--AIQHILPCVKELS----------------------------------SDSSQHVRSALASVIMGMAPL  283 (521)
Q Consensus       240 ~l~~~~~~~~--~~~~~~~~l~~~~----------------------------------~d~~~~vr~~~~~~l~~i~~~  283 (521)
                      .+....+.+.  +.+.+...+.+.+                                  +|-+|.||+++++++..+...
T Consensus       283 ~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsS  362 (1233)
T KOG1824|consen  283 SFLRRCPKEILPHVPEIINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISS  362 (1233)
T ss_pred             HHHHhChhhhcccchHHHHHHHHHhccCCCCCCCCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhc
Confidence            9999877652  1222222222111                                  122599999999999876532


Q ss_pred             cCh--HHHHHhHHHHHHHhhcCCChHH-----------------------------------------------------
Q 009975          284 LGK--DATIEQLLPIFLSLLKDEFPDV-----------------------------------------------------  308 (521)
Q Consensus       284 ~~~--~~~~~~l~~~l~~~l~d~~~~v-----------------------------------------------------  308 (521)
                      ..+  ..+...+-|.+..-+++.++.|                                                     
T Consensus       363 R~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~  442 (1233)
T KOG1824|consen  363 RLEMLPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQK  442 (1233)
T ss_pred             cHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCcccccCchhhhccCCccchHHHHhhhHHHHHHHHH
Confidence            211  0011112222222222222222                                                     


Q ss_pred             ---------HHHHHHHHHHhhhhh-------------------------------------------chhhH---hhhHH
Q 009975          309 ---------RLNIISKLDQVNQVI-------------------------------------------GIDLL---SQSLL  333 (521)
Q Consensus       309 ---------r~~a~~~l~~~~~~~-------------------------------------------~~~~~---~~~~~  333 (521)
                               |.++...+..++..+                                           +++.+   ...+.
T Consensus       443 qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls  522 (1233)
T KOG1824|consen  443 QLREKSVKTRQGCFLLLTELINVLPGALAQHIPSLVPGIIYSLNDKSSSSNLKIDALVFLYSALISHPPEVFHPHLSALS  522 (1233)
T ss_pred             HHhhccccchhhHHHHHHHHHHhCcchhhhcccccchhhhhhcCCccchHHHHHHHHHHHHHHHhcCChhhcccchhhhh
Confidence                     222222222221110                                           01111   11223


Q ss_pred             HHHHHHhcCCChHHHHHHHHHhHHHHhhhCh---------hhhHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHHHHhC
Q 009975          334 PAIVELAEDRHWRVRLAIIEYIPLLASQLGV---------GFFDDKLGALCMQWL--QDKVYSIRDAAANNLKRLAEEFG  402 (521)
Q Consensus       334 ~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~---------~~~~~~l~~~l~~~l--~d~~~~vr~~a~~~l~~l~~~~~  402 (521)
                      |.+.....++.+++-..++-.+..+++.+.+         ..+...+....++.+  +|.+.+||+.|+.+++.++..+|
T Consensus       523 ~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fg  602 (1233)
T KOG1824|consen  523 PPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFG  602 (1233)
T ss_pred             hHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHh
Confidence            3333344666666666666666666655422         223333444444443  47888999999999999998888


Q ss_pred             HHH--HHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhc---ccChHHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHh
Q 009975          403 PEW--AMQHITPQVLEMINNPHYLYRMTILRAISLLAP---VMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIP  477 (521)
Q Consensus       403 ~~~--~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~---~~~~~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~  477 (521)
                      ...  .....+|.+.+.++  |.-.|.+|+.++..++.   .+.......++++.+...+.-.....|.....++..+.+
T Consensus       603 D~l~~eL~~~L~il~eRl~--nEiTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~  680 (1233)
T KOG1824|consen  603 DFLGNELPRTLPILLERLG--NEITRLTAVKALTLIAMSPLDIDLSPVLTEILPELASFLRKNQRALRLATLTALDKLVK  680 (1233)
T ss_pred             hhhhhhhHHHHHHHHHHHh--chhHHHHHHHHHHHHHhccceeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            421  12345555555554  45678889999888875   233334457788888888877777888899999988888


Q ss_pred             hhch---HHHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHHhh
Q 009975          478 IVDQ---SMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVM  518 (521)
Q Consensus       478 ~~~~---~~~~~~~~~~l~~l~~D~~~~vr~~a~~al~~l~~~~  518 (521)
                      .++.   ....+.++..+..|.+++|-.|-..|...+.++...-
T Consensus       681 ~~~~~~~~~~~e~vL~el~~Lisesdlhvt~~a~~~L~tl~~~~  724 (1233)
T KOG1824|consen  681 NYSDSIPAELLEAVLVELPPLISESDLHVTQLAVAFLTTLAIIQ  724 (1233)
T ss_pred             HHhccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcc
Confidence            7753   2334566666677888999888888888888776543

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.88  E-value=1.1e-18  Score=186.57  Aligned_cols=493  Identities=13%  Similarity=0.098  Sum_probs=345.2

Q ss_pred             hhhHHhhhhcCchhHHHHHHHHHHHHHHhhcCh---hHHHHhHHHHHHHhhcC-CCCcchhhhhhhhhhhcCCCChH---
Q 009975           21 LLPPLETLCTVEETCVRDKAVESLCRIGSQMRE---SDLVDWYIPLVKRLAAG-EWFTARVSACGLFHIAYPSAPDI---   93 (521)
Q Consensus        21 l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~---~~~~~~l~p~i~~~~~~-~~~~~r~~~~~~~~~~~~~~~~~---   93 (521)
                      ..|.+..+++++++.++..|+..+..++...+.   .-+....+|.+.+++.+ ++..+|..+...+..+..+.++.   
T Consensus       190 aVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e~r~~  269 (2102)
T PLN03200        190 GVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEAKQA  269 (2102)
T ss_pred             CHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCCHHHHHH
Confidence            677788888889999999999988888765432   22456778888888864 45578888887787777654433   


Q ss_pred             -HHHHHHHHHHHhcCCCC---------hHHHHHHHHhHHHHHHhhCc-----------h-hhH---H--H----------
Q 009975           94 -LKTELRSIYTQLCQDDM---------PMVRRSAASNLGKFAATVEP-----------A-HLK---T--D----------  136 (521)
Q Consensus        94 -~~~~l~~~l~~l~~~~~---------~~vr~~a~~~l~~l~~~~~~-----------~-~~~---~--~----------  136 (521)
                       ....-++.+.+++..++         +..++.+..+|++++.....           . ...   .  .          
T Consensus       270 Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~rd~~~~ada~gALayll~l~d  349 (2102)
T PLN03200        270 IADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMSALILYLGELSESPRSPAPIADTLGALAYALMVFD  349 (2102)
T ss_pred             HHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHHHHHHhhcccchHHHHHHHHhhHHHHHHhcC
Confidence             11223456665554333         45689999999998864211           0 000   0  0          


Q ss_pred             -------------HHHHHHHhhcCCChh-HHHHHHHHHHHHhhhcCh--hhhhhhhHHHHHHhcCCCChHHHHHHHHHHH
Q 009975          137 -------------IMSIFEDLTQDDQDS-VRLLAVEGCAALGKLLEP--QDCVAHILPVIVNFSQDKSWRVRYMVANQLY  200 (521)
Q Consensus       137 -------------l~~~l~~l~~d~~~~-vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~  200 (521)
                                   +.+.+.+++...++. +...+.++|..+..+..-  -.......+.+..++...+.+++..++.++.
T Consensus       350 ~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av~aL~  429 (2102)
T PLN03200        350 SSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQEELIRALS  429 (2102)
T ss_pred             CchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHHHHHHHHHH
Confidence                         012222222222221 122223333221111100  0011234455666666677889999999988


Q ss_pred             HHHHHhC---CCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHH---HHHHhhhHHHHHhccCCcHHHHHHHH
Q 009975          201 ELCEAVG---PEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE---LAIQHILPCVKELSSDSSQHVRSALA  274 (521)
Q Consensus       201 ~i~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~~~~l~~~~~d~~~~vr~~~~  274 (521)
                      .++..-.   ........+|.+++++.+++..+|..|+..++.++..-...   ......+|.+.+++..++..+|..++
T Consensus       430 ~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAa  509 (2102)
T PLN03200        430 SLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSA  509 (2102)
T ss_pred             HHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHH
Confidence            7763211   11223457899999999999999999999999987633221   12245789999999999999999999


Q ss_pred             HHHHccccccCh-H-HH-HHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHhcCCChHHHHHH
Q 009975          275 SVIMGMAPLLGK-D-AT-IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAI  351 (521)
Q Consensus       275 ~~l~~i~~~~~~-~-~~-~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~  351 (521)
                      +++++++..-.. . .. ....+|.++.++++.+++++..|+.++..+...-.     +..++.+..++..++..++..+
T Consensus       510 wAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d-----~~~I~~Lv~LLlsdd~~~~~~a  584 (2102)
T PLN03200        510 TVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTAD-----AATISQLTALLLGDLPESKVHV  584 (2102)
T ss_pred             HHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccc-----hhHHHHHHHHhcCCChhHHHHH
Confidence            999999863211 1 11 23578999999999999999999999999976432     3345667788888888888889


Q ss_pred             HHHhHHHHhhhChhhhH------HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCH---HHHHhhhHHHHHhhhcCcc
Q 009975          352 IEYIPLLASQLGVGFFD------DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP---EWAMQHITPQVLEMINNPH  422 (521)
Q Consensus       352 ~~~l~~l~~~~~~~~~~------~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~~~~  422 (521)
                      ++.++.+......+...      ...+|.+..+++.++..+++.|+.++..++..-..   .......+|.+..++.+.+
T Consensus       585 L~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~  664 (2102)
T PLN03200        585 LDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNT  664 (2102)
T ss_pred             HHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCC
Confidence            99888887655443211      24689999999999999999999999999863221   2234678899999999999


Q ss_pred             hHHHHHHHHHHHHhhcccChHH----HhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchH--HHHhhHHHHHHHhc
Q 009975          423 YLYRMTILRAISLLAPVMGSEI----TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--MVEKTIRPCLVELT  496 (521)
Q Consensus       423 ~~~r~~a~~~l~~l~~~~~~~~----~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~--~~~~~~~~~l~~l~  496 (521)
                      ..++..++++++.++.....+.    .....+|.+.+++++++..++..++.+|..++......  ......+|.|.+++
T Consensus       665 ~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lL  744 (2102)
T PLN03200        665 EAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVL  744 (2102)
T ss_pred             hHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHH
Confidence            9999999999999997433332    23568889999999999999999999999999865332  34466789999999


Q ss_pred             CCCCccHHHHHHHHHHHHHHhh
Q 009975          497 EDPDVDVRFFATQAIQSIDHVM  518 (521)
Q Consensus       497 ~D~~~~vr~~a~~al~~l~~~~  518 (521)
                      .+...++|.+|++++..|++..
T Consensus       745 r~G~~~~k~~Aa~AL~~L~~~~  766 (2102)
T PLN03200        745 REGTLEGKRNAARALAQLLKHF  766 (2102)
T ss_pred             HhCChHHHHHHHHHHHHHHhCC
Confidence            9999999999999999888654

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=99.88  E-value=7.1e-19  Score=164.29  Aligned_cols=413  Identities=17%  Similarity=0.173  Sum_probs=311.0

Q ss_pred             HHHHhcCCCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhc-CCChhHHHHHHHHHHHHhhhcChhh-hhhhhHH
Q 009975          101 IYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQ-DDQDSVRLLAVEGCAALGKLLEPQD-CVAHILP  178 (521)
Q Consensus       101 ~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~-d~~~~vr~~a~~~l~~l~~~~~~~~-~~~~l~~  178 (521)
                      ++...-.|+.+.||....++........+.+ ....+.|...+.++ +.++.+|...+-..+.++.+....+ ....++.
T Consensus        21 ~~~~~g~d~~~~v~~~ml~a~~~~~~~~~~~-~v~~l~~~~~~~l~~~~~~~~~~~~~v~~~~~a~~~~~~d~~~~~~~~   99 (569)
T KOG1242|consen   21 FLVSAGEDRRIDVRGNMLEAGEAAINQHGDQ-NVLNLKPCFEQRLNSLHNDNLRNNVVVLEGTLAFHLQIVDPRPISIIE   99 (569)
T ss_pred             eecccCCCcchhhHHhHHHHHHHHHHhhhHH-HHHHHHHHHHHHhccchhHHHhhhhHHHHHHHHHhccccCcchhHHHH
Confidence            3333347788889999888888777666643 34456666666554 4477889998888888888865432 3344666


Q ss_pred             HHHHhcCCCChHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHH-HhhhHH
Q 009975          179 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAI-QHILPC  257 (521)
Q Consensus       179 ~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~-~~~~~~  257 (521)
                      .+..-...+++.+|++...++..+........ ...+.+.+.+++......-|..+...+..+....+-+.+. ..++..
T Consensus       100 ~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~-~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~~~~l~~  178 (569)
T KOG1242|consen  100 ILLEELDTPSKSVQRAVSTCLPPLVVLSKGLS-GEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIESLKEFGFLDN  178 (569)
T ss_pred             HHHHhcCCCcHHHHHHHHHHhhhHHHHhhccC-HHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHhhhhhhhHHHH
Confidence            77777888999999999999988876554333 4567888888888777788888888888777766554433 346677


Q ss_pred             HHHhccCCcHHH-HHHHHHHHHccccccCh--HHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchhhHhhhHHH
Q 009975          258 VKELSSDSSQHV-RSALASVIMGMAPLLGK--DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLP  334 (521)
Q Consensus       258 l~~~~~d~~~~v-r~~~~~~l~~i~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~  334 (521)
                      +.....|++... |+.+..++......+|.  +.+.-.++|.++..+.|..+.||.+|..+...+...+....+ +.++|
T Consensus       179 l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aV-K~llp  257 (569)
T KOG1242|consen  179 LSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAV-KLLLP  257 (569)
T ss_pred             HHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchh-hHhhh
Confidence            777778876654 44455555555555554  223446788888889999999999999999999988887766 56666


Q ss_pred             HHHHHhcCCChHHHHHHHHHhHHHHhhhChh--hhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHHHHHhhhHH
Q 009975          335 AIVELAEDRHWRVRLAIIEYIPLLASQLGVG--FFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITP  412 (521)
Q Consensus       335 ~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~  412 (521)
                      .+..-+.+..|+.+.++++.++.++...+..  ...+.++|.+.+.+.|..+.||.++.+++..+.....+.. .+.++|
T Consensus       258 sll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~d-I~~~ip  336 (569)
T KOG1242|consen  258 SLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPD-IQKIIP  336 (569)
T ss_pred             hhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHH-HHHHHH
Confidence            6655444559999999999999998887664  5568899999999999999999999999999998887665 467999


Q ss_pred             HHHhhhcCcchHHHHHHHHHHHH--hhcccChHHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhc-hH---HHHh
Q 009975          413 QVLEMINNPHYLYRMTILRAISL--LAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD-QS---MVEK  486 (521)
Q Consensus       413 ~l~~~l~~~~~~~r~~a~~~l~~--l~~~~~~~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~-~~---~~~~  486 (521)
                      .+.+.+.|++..+..+ +..++.  +..... ..-..-+.|.+.+.+.+.+...+..++..++.++.-.. +.   .+.+
T Consensus       337 ~Lld~l~dp~~~~~e~-~~~L~~ttFV~~V~-~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~  414 (569)
T KOG1242|consen  337 TLLDALADPSCYTPEC-LDSLGATTFVAEVD-APSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLP  414 (569)
T ss_pred             HHHHHhcCcccchHHH-HHhhcceeeeeeec-chhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHH
Confidence            9999999998655432 222222  111111 12346788999999999999999999999999998873 32   4568


Q ss_pred             hHHHHHHHhcCCCCccHHHHHHHHHHHHHHhhc
Q 009975          487 TIRPCLVELTEDPDVDVRFFATQAIQSIDHVMM  519 (521)
Q Consensus       487 ~~~~~l~~l~~D~~~~vr~~a~~al~~l~~~~~  519 (521)
                      .++|.+.+...|++++||..+++|++.+.+-++
T Consensus       415 ~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g  447 (569)
T KOG1242|consen  415 SLLPGLKENLDDAVPEVRAVAARALGALLERLG  447 (569)
T ss_pred             HHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHH
Confidence            899999999999999999999999999887665

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=99.87  E-value=3e-20  Score=194.29  Aligned_cols=275  Identities=22%  Similarity=0.268  Sum_probs=220.7

Q ss_pred             hHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhhh
Q 009975          176 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHIL  255 (521)
Q Consensus       176 l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~  255 (521)
                      -++.+...++|+++.||..+++.|+.+.        .+..++.+.+.++|+++.||..|+.+|..+.+..+.       .
T Consensus       622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~--------~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~-------~  686 (897)
T PRK13800        622 SVAELAPYLADPDPGVRRTAVAVLTETT--------PPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPP-------A  686 (897)
T ss_pred             hHHHHHHHhcCCCHHHHHHHHHHHhhhc--------chhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCc-------h
Confidence            3456777889999999999999999764        356789999999999999999999999988654332       2


Q ss_pred             HHHHHhccCCcHHHHHHHHHHHHccccccChHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchhhHhhhHHHH
Q 009975          256 PCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPA  335 (521)
Q Consensus       256 ~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~  335 (521)
                      +.+...+.++++.||..++.+++.+..  +.       .+.+...++|+++.||..|+.+|+.+..           .+.
T Consensus       687 ~~L~~~L~~~d~~VR~~A~~aL~~~~~--~~-------~~~l~~~L~D~d~~VR~~Av~aL~~~~~-----------~~~  746 (897)
T PRK13800        687 PALRDHLGSPDPVVRAAALDVLRALRA--GD-------AALFAAALGDPDHRVRIEAVRALVSVDD-----------VES  746 (897)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHhhcc--CC-------HHHHHHHhcCCCHHHHHHHHHHHhcccC-----------cHH
Confidence            345566788999999999999988642  11       2356778999999999999999998632           134


Q ss_pred             HHHHhcCCChHHHHHHHHHhHHHHhhhChhhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHH
Q 009975          336 IVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVL  415 (521)
Q Consensus       336 l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~  415 (521)
                      +...++|+++.||..++..|+.+...-      ....+.+..+++|+++.||.+|+.+|+.+..       ...+.+.+.
T Consensus       747 l~~~l~D~~~~VR~~aa~aL~~~~~~~------~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~-------~~~~~~~l~  813 (897)
T PRK13800        747 VAGAATDENREVRIAVAKGLATLGAGG------APAGDAVRALTGDPDPLVRAAALAALAELGC-------PPDDVAAAT  813 (897)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHhcccc------chhHHHHHHHhcCCCHHHHHHHHHHHHhcCC-------cchhHHHHH
Confidence            567789999999999999998775431      1235677899999999999999999987632       123445677


Q ss_pred             hhhcCcchHHHHHHHHHHHHhhcccChHHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchHHHHhhHHHHHHHh
Q 009975          416 EMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVEL  495 (521)
Q Consensus       416 ~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~~~~~~~~l~~l  495 (521)
                      ..+.|++|.+|..|+.+|+.+..        +..++.+..+++|+++.||..|+.+|+.+.   +    .+...+.|.+.
T Consensus       814 ~aL~d~d~~VR~~Aa~aL~~l~~--------~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~---~----~~~a~~~L~~a  878 (897)
T PRK13800        814 AALRASAWQVRQGAARALAGAAA--------DVAVPALVEALTDPHLDVRKAAVLALTRWP---G----DPAARDALTTA  878 (897)
T ss_pred             HHhcCCChHHHHHHHHHHHhccc--------cchHHHHHHHhcCCCHHHHHHHHHHHhccC---C----CHHHHHHHHHH
Confidence            88999999999999999988752        345688999999999999999999999862   1    24567888888


Q ss_pred             cCCCCccHHHHHHHHHHH
Q 009975          496 TEDPDVDVRFFATQAIQS  513 (521)
Q Consensus       496 ~~D~~~~vr~~a~~al~~  513 (521)
                      ++|+|.+||..|.++|..
T Consensus       879 l~D~d~~Vr~~A~~aL~~  896 (897)
T PRK13800        879 LTDSDADVRAYARRALAH  896 (897)
T ss_pred             HhCCCHHHHHHHHHHHhh
Confidence            999999999999999864

>PRK09687 putative lyase; Provisional

Probab=99.87  E-value=5.4e-20  Score=164.36  Aligned_cols=254  Identities=20%  Similarity=0.186  Sum_probs=191.0

Q ss_pred             hHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccChHHHHHhHH
Q 009975          215 LVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL  294 (521)
Q Consensus       215 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~  294 (521)
                      -.+.+...+.|++..||..++.+|..+..        +.+++.+..++.++++.+|..++++++.+...-..   ....+
T Consensus        24 ~~~~L~~~L~d~d~~vR~~A~~aL~~~~~--------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~---~~~a~   92 (280)
T PRK09687         24 NDDELFRLLDDHNSLKRISSIRVLQLRGG--------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC---QDNVF   92 (280)
T ss_pred             cHHHHHHHHhCCCHHHHHHHHHHHHhcCc--------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc---hHHHH
Confidence            35666677788888888888888876543        33556667777888888888888888887532110   23456


Q ss_pred             HHHHHh-hcCCChHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChhhhHHHHHH
Q 009975          295 PIFLSL-LKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGA  373 (521)
Q Consensus       295 ~~l~~~-l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~  373 (521)
                      |.+..+ ++|+++.||..|+.+|+.+...-.  ......++.+.....|++|.||..++.+|+.+.        .+..++
T Consensus        93 ~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~--~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~--------~~~ai~  162 (280)
T PRK09687         93 NILNNLALEDKSACVRASAINATGHRCKKNP--LYSPKIVEQSQITAFDKSTNVRFAVAFALSVIN--------DEAAIP  162 (280)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHhccccccc--ccchHHHHHHHHHhhCCCHHHHHHHHHHHhccC--------CHHHHH
Confidence            777665 788888999999988888753211  011345666777778889999999988886442        234678


Q ss_pred             HHHHHcCCCcHHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChHHHhhcHHHHH
Q 009975          374 LCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVV  453 (521)
Q Consensus       374 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~il~~l  453 (521)
                      .+..+++|+++.||..|+.+|+.+.  .+    .+...+.|...+.|+++.+|..|+.+++.+..        +..+|.+
T Consensus       163 ~L~~~L~d~~~~VR~~A~~aLg~~~--~~----~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~--------~~av~~L  228 (280)
T PRK09687        163 LLINLLKDPNGDVRNWAAFALNSNK--YD----NPDIREAFVAMLQDKNEEIRIEAIIGLALRKD--------KRVLSVL  228 (280)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHhcCC--CC----CHHHHHHHHHHhcCCChHHHHHHHHHHHccCC--------hhHHHHH
Confidence            8889999999999999999998871  11    23577788888899999999999999988643        4678889


Q ss_pred             HhhcCCCCchHHHHHHHHHHHHHhhhchHHHHhhHHHHHHHhcC-CCCccHHHHHHHHHHH
Q 009975          454 INASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTE-DPDVDVRFFATQAIQS  513 (521)
Q Consensus       454 ~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~~~~~~~~l~~l~~-D~~~~vr~~a~~al~~  513 (521)
                      ++.++|+.  +|..++.+|+.+..        +..+|.|.++++ ++|..|+..|.+++.+
T Consensus       229 i~~L~~~~--~~~~a~~ALg~ig~--------~~a~p~L~~l~~~~~d~~v~~~a~~a~~~  279 (280)
T PRK09687        229 IKELKKGT--VGDLIIEAAGELGD--------KTLLPVLDTLLYKFDDNEIITKAIDKLKR  279 (280)
T ss_pred             HHHHcCCc--hHHHHHHHHHhcCC--------HhHHHHHHHHHhhCCChhHHHHHHHHHhc
Confidence            99998866  78889999988875        467888888775 8899999999988864

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.86  E-value=6.7e-18  Score=180.77  Aligned_cols=472  Identities=13%  Similarity=0.144  Sum_probs=339.8

Q ss_pred             hHHHHHHHHHHHHHHhhcChhHHHHhHHHHHHHhhcCC-CCcchhhhhhhhhhh---cCCCChHHH----HHHHHHHHHh
Q 009975           34 TCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGE-WFTARVSACGLFHIA---YPSAPDILK----TELRSIYTQL  105 (521)
Q Consensus        34 ~~vR~~a~~~l~~i~~~~~~~~~~~~l~p~i~~~~~~~-~~~~r~~~~~~~~~~---~~~~~~~~~----~~l~~~l~~l  105 (521)
                      ...++.|+-+|+.+|...      ..++|++.+..++. +......++..+..+   .....+...    ..+.+.+.++
T Consensus       297 ~~Lqe~AvwALsNIcgg~------~~ll~~L~~ll~s~rd~~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~L  370 (2102)
T PLN03200        297 QALQENAMGALANICGGM------SALILYLGELSESPRSPAPIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKL  370 (2102)
T ss_pred             hHHHHHHHHHHHHHhCCc------hhhHHHHHHhhcccchHHHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHH
Confidence            345788888999998764      46788887776643 222222333333333   222222111    1234678888


Q ss_pred             cCCCChH-HHHHHHHhHHHHHHhhCc--hhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcCh---hhhhhhhHHH
Q 009975          106 CQDDMPM-VRRSAASNLGKFAATVEP--AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP---QDCVAHILPV  179 (521)
Q Consensus       106 ~~~~~~~-vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~  179 (521)
                      +.++++. ++..+..+|..+......  -.......+.+..++...+..++..++..+..++..-..   .......+|.
T Consensus       371 lr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~  450 (2102)
T PLN03200        371 LKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQL  450 (2102)
T ss_pred             hCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHH
Confidence            8887666 477888887654332211  112345567788888888889999999999999865221   1123347899


Q ss_pred             HHHhcCCCChHHHHHHHHHHHHHHHHhC---CCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCH-HHHH--Hh
Q 009975          180 IVNFSQDKSWRVRYMVANQLYELCEAVG---PEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP-ELAI--QH  253 (521)
Q Consensus       180 l~~~~~d~~~~vR~~~~~~l~~i~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~-~~~~--~~  253 (521)
                      +.+++.+++..+|..++..++.++..-.   ........+|.+.+++..++..+|+.|+.+++.++..-.. ....  ..
T Consensus       451 LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aG  530 (2102)
T PLN03200        451 LISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAG  530 (2102)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCC
Confidence            9999999999999999999998874211   1122367899999999999999999999999999874211 1112  24


Q ss_pred             hhHHHHHhccCCcHHHHHHHHHHHHccccccChHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchhhH-----
Q 009975          254 ILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL-----  328 (521)
Q Consensus       254 ~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~-----  328 (521)
                      .+|.+.+++.+.++++|..+++++..+...-..     ..++.+..++..+++.++..++..++.+......+..     
T Consensus       531 AIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~-----~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~  605 (2102)
T PLN03200        531 AVPALLWLLKNGGPKGQEIAAKTLTKLVRTADA-----ATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGS  605 (2102)
T ss_pred             CHHHHHHHHhCCCHHHHHHHHHHHHHHHhccch-----hHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhh
Confidence            788889999999999999999999998654322     2346677888888899999999999888664443221     


Q ss_pred             -hhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhCh---hhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHH
Q 009975          329 -SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---GFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE  404 (521)
Q Consensus       329 -~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~  404 (521)
                       ....+|.+.+++++++..+++.++..+..++..-..   .......+|.+..++++.+.+++..++.+|+.+......+
T Consensus       606 ~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~  685 (2102)
T PLN03200        606 AANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKEN  685 (2102)
T ss_pred             hccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHH
Confidence             245789999999999999999999999888864322   2334557888889999999999999999999998633222


Q ss_pred             ----HHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccCh--HHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhh
Q 009975          405 ----WAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS--EITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPI  478 (521)
Q Consensus       405 ----~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~--~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~  478 (521)
                          ......+|.|.+++++++..++..++.++..++..-..  +......++.+...+++.++.+|..|+.+|..++..
T Consensus       686 q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~  765 (2102)
T PLN03200        686 RKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKH  765 (2102)
T ss_pred             HHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhC
Confidence                12356899999999999999999999999999974322  223467789999999999999999999999999988


Q ss_pred             hchHH-H-----HhhHHHHHHHhcCCCCccHHHH--HHHHHHHHHH
Q 009975          479 VDQSM-V-----EKTIRPCLVELTEDPDVDVRFF--ATQAIQSIDH  516 (521)
Q Consensus       479 ~~~~~-~-----~~~~~~~l~~l~~D~~~~vr~~--a~~al~~l~~  516 (521)
                      ...+. +     .......|..+++-.|.++-..  |..++..+.+
T Consensus       766 ~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al~~l~~l~~  811 (2102)
T PLN03200        766 FPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSATSEALEALALLAR  811 (2102)
T ss_pred             CChhHHHHHHHHHhCcHHHHHHHHhcCCcchhhHHHHHHHHHHHHh
Confidence            76443 2     2334455555556555555554  8888877766

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=99.86  E-value=4e-17  Score=149.74  Aligned_cols=513  Identities=13%  Similarity=0.082  Sum_probs=349.3

Q ss_pred             hhhhccccCCCcchhHHhhhhHHhhhhcCchh-HHHHHHHHHHHHHHhhcChhHHHHhHHHHHHHh-----hcCCCCcch
Q 009975            3 EELGVFIPYVGGVEHAHVLLPPLETLCTVEET-CVRDKAVESLCRIGSQMRESDLVDWYIPLVKRL-----AAGEWFTAR   76 (521)
Q Consensus         3 ~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~-~vR~~a~~~l~~i~~~~~~~~~~~~l~p~i~~~-----~~~~~~~~r   76 (521)
                      ..++.++.+=-..-.++.++..+.....++.| +....++..++.+|+.-.|+.+...--..+...     .+++...+|
T Consensus       116 ql~aaIA~~Elp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~Pe~li~~sN~il~aiv~ga~k~et~~avR  195 (858)
T COG5215         116 QLLAAIARMELPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAPEDLIQMSNVILFAIVMGALKNETTSAVR  195 (858)
T ss_pred             HHHHHHHHhhCccccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCHHHHHHHhhHHHHHHHHhhcccCchHHHH
Confidence            33444544422223467778887777777766 788899999999999999965543222222222     224456778


Q ss_pred             hhhhhhhhhhc-----CCCChHHHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhC---chhhHHHHHHHHHHhhcCC
Q 009975           77 VSACGLFHIAY-----PSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVE---PAHLKTDIMSIFEDLTQDD  148 (521)
Q Consensus        77 ~~~~~~~~~~~-----~~~~~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~---~~~~~~~l~~~l~~l~~d~  148 (521)
                      .+++..+....     ...-+..++.+++..++..+.++.+++.++.-++..++....   +...++.+..+..+.+.+.
T Consensus       196 LaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~  275 (858)
T COG5215         196 LAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQ  275 (858)
T ss_pred             HHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence            77776543311     122344688899999999999999999999999999886533   2344556666777788999


Q ss_pred             ChhHHHHHHHHHHHHhhhcCh-h------------------hhhhhhHHHHHHhcC-------CCChHHHHHHHHHHHHH
Q 009975          149 QDSVRLLAVEGCAALGKLLEP-Q------------------DCVAHILPVIVNFSQ-------DKSWRVRYMVANQLYEL  202 (521)
Q Consensus       149 ~~~vr~~a~~~l~~l~~~~~~-~------------------~~~~~l~~~l~~~~~-------d~~~~vR~~~~~~l~~i  202 (521)
                      ++.|...+++.+..+++.-.+ +                  ....+++|-++.++.       +++|.+..++..++.-+
T Consensus       276 nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlf  355 (858)
T COG5215         276 NDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLF  355 (858)
T ss_pred             chHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHH
Confidence            999999999999888764211 0                  112346777776553       46899999999999988


Q ss_pred             HHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHH---HHHHhhhHHHHHhccCCcHHHHHHHHHHHHc
Q 009975          203 CEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE---LAIQHILPCVKELSSDSSQHVRSALASVIMG  279 (521)
Q Consensus       203 ~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~  279 (521)
                      +...|+.... .++.++.+.++.++|.-|.+|+.+++.+...-...   .+.++.+|.+.....|+.-.|+..++++++.
T Consensus       356 aq~~gd~i~~-pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~  434 (858)
T COG5215         356 AQLKGDKIMR-PVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGA  434 (858)
T ss_pred             HHHhhhHhHH-HHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHH
Confidence            8877766543 48888899999999999999999999988744332   3456678888888899999999999999999


Q ss_pred             cccccChHHHH-HhHHHHHH---HhhcCCChHHHHHHHHHHHHhhhhhchhh------H---hhhHHHHHHHHh--cCCC
Q 009975          280 MAPLLGKDATI-EQLLPIFL---SLLKDEFPDVRLNIISKLDQVNQVIGIDL------L---SQSLLPAIVELA--EDRH  344 (521)
Q Consensus       280 i~~~~~~~~~~-~~l~~~l~---~~l~d~~~~vr~~a~~~l~~~~~~~~~~~------~---~~~~~~~l~~~~--~~~~  344 (521)
                      +++........ .++.+...   ..+.|. |.+-.++.+....+..++.+-.      +   -..++..+....  .+..
T Consensus       435 iad~va~~i~p~~Hl~~~vsa~liGl~D~-p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne  513 (858)
T COG5215         435 IADHVAMIISPCGHLVLEVSASLIGLMDC-PFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNE  513 (858)
T ss_pred             HHHHHHHhcCccccccHHHHHHHhhhhcc-chHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccc
Confidence            98766443221 12333322   234443 6666677777777666655321      1   122333332211  3455


Q ss_pred             hHHHHHHHHHhHHHHhhhChhh------hHHHHHHHHHHHc---------CC--CcHHHHHHHHHHHHHHHHHhCH--HH
Q 009975          345 WRVRLAIIEYIPLLASQLGVGF------FDDKLGALCMQWL---------QD--KVYSIRDAAANNLKRLAEEFGP--EW  405 (521)
Q Consensus       345 ~~vr~~~~~~l~~l~~~~~~~~------~~~~l~~~l~~~l---------~d--~~~~vr~~a~~~l~~l~~~~~~--~~  405 (521)
                      ...|.+..++++.+...++...      +.+++..-+.+.+         +|  ...++....+..+..++...+.  +.
T Consensus       514 ~n~R~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~  593 (858)
T COG5215         514 SNLRVSLFSALGTLILICPDAVSDILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIED  593 (858)
T ss_pred             hhHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence            6789999999999988776531      1122222221111         12  2345666777777777777766  34


Q ss_pred             HHhhhHHHHHhhhcCcch-HHHHHHHHHHHHhhcccCh--HHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchH
Q 009975          406 AMQHITPQVLEMINNPHY-LYRMTILRAISLLAPVMGS--EITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS  482 (521)
Q Consensus       406 ~~~~l~~~l~~~l~~~~~-~~r~~a~~~l~~l~~~~~~--~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~  482 (521)
                      ..++++..+...++..++ .+-.-...+++.+...++.  +.+.+.+.|++.+.++..+..|-..+...++.++..++.+
T Consensus       594 v~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~aln~~d~~v~~~avglvgdlantl~~d  673 (858)
T COG5215         594 VEDQLMELFIRILESTKPTTAFGDVYTAISALSTSLEERFEQYASKFIPYLTRALNCTDRFVLNSAVGLVGDLANTLGTD  673 (858)
T ss_pred             HHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhh
Confidence            556788888888877643 3445566677777765554  4477899999999999999999999999999999998876


Q ss_pred             H--HHhhHHHHHHHhcCC--CCccHHHHHHHHHHHHHHh
Q 009975          483 M--VEKTIRPCLVELTED--PDVDVRFFATQAIQSIDHV  517 (521)
Q Consensus       483 ~--~~~~~~~~l~~l~~D--~~~~vr~~a~~al~~l~~~  517 (521)
                      .  +...+...|.+.++.  .+.+++-...++++.+.--
T Consensus       674 f~~y~d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIAla  712 (858)
T COG5215         674 FNIYADVLMSSLVQCLSSEATHRDLKPAILSVFGDIALA  712 (858)
T ss_pred             HHHHHHHHHHHHHHHhcChhhccccchHHHHHHHHHHHH
Confidence            4  345666666665443  4778888888888877643

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.85  E-value=1.6e-18  Score=174.25  Aligned_cols=441  Identities=18%  Similarity=0.193  Sum_probs=326.7

Q ss_pred             HHhhhhHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHHHhHHHHHHHhhcCCCCcchhhhhhhhhhhcCCCChHHHHH
Q 009975           18 AHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTE   97 (521)
Q Consensus        18 ~~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~p~i~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~   97 (521)
                      .......+.+=+.++++.+|-.|+++++.++.    ..+.+.+.|.+.++..++++.+|..|+..+..++...++.....
T Consensus        77 ~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~----~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~  152 (526)
T PF01602_consen   77 LILIINSLQKDLNSPNPYIRGLALRTLSNIRT----PEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDE  152 (526)
T ss_dssp             HHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-S----HHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGG
T ss_pred             HHHHHHHHHHhhcCCCHHHHHHHHhhhhhhcc----cchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHH
Confidence            34456667776778999999999999999873    34557888999999998888999998888888876655443222


Q ss_pred             HHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCch--hhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcChhhhhhh
Q 009975           98 LRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPA--HLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAH  175 (521)
Q Consensus        98 l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~  175 (521)
                      +.+.+.+++.|+++.|+.+|+..+..+ +..+..  ...+.+...+.+++.+.++..+...++++..++..-........
T Consensus       153 ~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~~~  231 (526)
T PF01602_consen  153 LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADKNR  231 (526)
T ss_dssp             HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHHHH
T ss_pred             HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhHHH
Confidence            899999999999999999999999998 222212  34455566666666888888888888888876654322211156


Q ss_pred             hHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhhh
Q 009975          176 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHIL  255 (521)
Q Consensus       176 l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~  255 (521)
                      +++.+...+++.++.|...++..+..+..   .......+++.+.+++.++++++|..++.++..++...++...  ...
T Consensus       232 ~i~~l~~~l~s~~~~V~~e~~~~i~~l~~---~~~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v~--~~~  306 (526)
T PF01602_consen  232 IIEPLLNLLQSSSPSVVYEAIRLIIKLSP---SPELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPPAVF--NQS  306 (526)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHSS---SHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHHG--THH
T ss_pred             HHHHHHHHhhccccHHHHHHHHHHHHhhc---chHHHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccchhhh--hhh
Confidence            78888888888889999988888765432   1223467889999999999999999999999998886522221  222


Q ss_pred             HHHHHhccCCcHHHHHHHHHHHHccccccChHHHHHhHHHHHHHhhcCC-ChHHHHHHHHHHHHhhhhhchhhHhhhHHH
Q 009975          256 PCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDE-FPDVRLNIISKLDQVNQVIGIDLLSQSLLP  334 (521)
Q Consensus       256 ~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~  334 (521)
                      ..+..+..+++..+|..++..+..++.    +...+.+++.+...+.+. ++++|..++..++.++.......  +..++
T Consensus       307 ~~~~~l~~~~d~~Ir~~~l~lL~~l~~----~~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~--~~~v~  380 (526)
T PF01602_consen  307 LILFFLLYDDDPSIRKKALDLLYKLAN----ESNVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPDA--EWYVD  380 (526)
T ss_dssp             HHHHHHHCSSSHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSH--HHHHH
T ss_pred             hhhheecCCCChhHHHHHHHHHhhccc----ccchhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCchH--HHHHH
Confidence            222333457888899999998888874    223456777788888444 78899999999999998775432  66788


Q ss_pred             HHHHHhcCCChHHHHHHHHHhHHHHhhhChhhhHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHHHHHhCH-HHHHhhhHH
Q 009975          335 AIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQD-KVYSIRDAAANNLKRLAEEFGP-EWAMQHITP  412 (521)
Q Consensus       335 ~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~-~~~~~~l~~  412 (521)
                      .+.+++...+..+...++..+..+....+..  ....+..+...+.+ .++.++..++..+|+....... . ....++.
T Consensus       381 ~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~~--~~~~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~~~-~~~~~~~  457 (526)
T PF01602_consen  381 TLLKLLEISGDYVSNEIINVIRDLLSNNPEL--REKILKKLIELLEDISSPEALAAAIWILGEYGELIENTE-SAPDILR  457 (526)
T ss_dssp             HHHHHHHCTGGGCHCHHHHHHHHHHHHSTTT--HHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTTTT-HHHHHHH
T ss_pred             HHHHhhhhccccccchHHHHHHHHhhcChhh--hHHHHHHHHHHHHHhhHHHHHHHHHhhhcccCCcccccc-cHHHHHH
Confidence            8888888877788888888887777654332  34567777777766 6778999999999999877754 2 3456677


Q ss_pred             HHHhhhcCcchHHHHHHHHHHHHhhcccChHHHhhcHHHHHHhhcC--CCCchHHHHHHHHHHHHHh
Q 009975          413 QVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASK--DRVPNIKFNVAKVLQSLIP  477 (521)
Q Consensus       413 ~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~--d~~~~VR~~a~~~l~~~~~  477 (521)
                      .+.+...+.+..+|...+.++.++....+.....+.+.+.+.+...  +.+++||..|...+..+-.
T Consensus       458 ~l~~~~~~~~~~vk~~ilt~~~Kl~~~~~~~~~~~~i~~~~~~~~~~~s~~~evr~Ra~~y~~ll~~  524 (526)
T PF01602_consen  458 SLIENFIEESPEVKLQILTALAKLFKRNPENEVQNEILQFLLSLATEDSSDPEVRDRAREYLRLLNS  524 (526)
T ss_dssp             HHHHHHTTSHHHHHHHHHHHHHHHHHHSCSTTHHHHHHHHHHCHHHHS-SSHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhccccHHHHHHHHHHHHHHHhhCCchhhHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHcc
Confidence            7777777788899999999999999877654445688889988888  8899999999988876543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=99.85  E-value=1.8e-17  Score=153.21  Aligned_cols=480  Identities=14%  Similarity=0.107  Sum_probs=332.0

Q ss_pred             hhHHhhhhHHhhhhcCchhHHHHHHHHHHHHHHhhcChh---HHHHhHHHHHHHhhcCCCCcchhhhhhhhhhhcCCCCh
Q 009975           16 EHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRES---DLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPD   92 (521)
Q Consensus        16 ~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~---~~~~~l~p~i~~~~~~~~~~~r~~~~~~~~~~~~~~~~   92 (521)
                      .|+..++..+.+++.|+...||..+..++..+++..+|-   ++.+.+-|+.....++- -..-.+.+..++.+.+-.++
T Consensus       354 ~hl~~l~~ci~~~l~D~~~~vRi~tA~alS~lae~~~Pygie~fd~vl~pLw~g~~~hr-gk~l~sfLkA~g~iiplm~p  432 (975)
T COG5181         354 SHLGPLLKCISKLLKDRSRFVRIDTANALSYLAELVGPYGIEQFDEVLCPLWEGASQHR-GKELVSFLKAMGFIIPLMSP  432 (975)
T ss_pred             hhhhhHHHHHHHHhhccceeeeehhHhHHHHHHHhcCCcchHHHHHHHHHHHHHHHhcC-CchHHHHHHHhccccccCCh
Confidence            566778999999999999999999999999999987764   43344445443333221 11223334445555554443


Q ss_pred             H----HHHHHHHHHHHhcCCCChHHHHHHHHhHHHH--------------------------------------------
Q 009975           93 I----LKTELRSIYTQLCQDDMPMVRRSAASNLGKF--------------------------------------------  124 (521)
Q Consensus        93 ~----~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l--------------------------------------------  124 (521)
                      +    ...+...++.....+++.+.++.........                                            
T Consensus       433 eYa~h~tre~m~iv~ref~spdeemkk~~l~v~~~C~~v~~~tp~~lr~~v~pefF~~fw~rr~A~dr~~~k~v~~ttvi  512 (975)
T COG5181         433 EYACHDTREHMEIVFREFKSPDEEMKKDLLVVERICDKVGTDTPWKLRDQVSPEFFSPFWRRRSAGDRRSYKQVVLTTVI  512 (975)
T ss_pred             HhhhhhHHHHHHHHHHHhCCchhhcchhHHHHHHHHhccCCCCHHHHHHhhcHHhhchHHHhhhcccccccceeehhHHH
Confidence            2    2233444444443333333222221111111                                            


Q ss_pred             -HHhhCchhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcCh----------------------------------
Q 009975          125 -AATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP----------------------------------  169 (521)
Q Consensus       125 -~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~----------------------------------  169 (521)
                       ++..+.    +.+..-+.+-..|+.+..|..++.+...+...++.                                  
T Consensus       513 lAk~~g~----~~v~~kil~~~~De~ep~r~m~a~~vsri~~~lg~~~~dErleerl~d~il~Afqeq~~t~~~il~~f~  588 (975)
T COG5181         513 LAKMGGD----PRVSRKILEYYSDEPEPYRKMNAGLVSRIFSRLGRLGFDERLEERLYDSILNAFQEQDTTVGLILPCFS  588 (975)
T ss_pred             HHHHcCC----hHHHHHHHhhccCCcchhhhhhhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhccccccEEEeccc
Confidence             111111    12233334445666666677666655555443321                                  


Q ss_pred             ----------hhhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCC---ccccchHHHHHHhcCCChHHHHHHHHH
Q 009975          170 ----------QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE---PTRMDLVPAYVRLLRDNEAEVRIAAAG  236 (521)
Q Consensus       170 ----------~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~  236 (521)
                                +.....++..++..++++.+.||..++..++.++..++..   .....+-.++.+.+..+.++|--..+.
T Consensus       589 tv~vsl~~r~kp~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lge~ypEvLgsil~  668 (975)
T COG5181         589 TVLVSLEFRGKPHLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLGEDYPEVLGSILK  668 (975)
T ss_pred             ceeeehhhccCcchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcCcccHHHHHHHHH
Confidence                      0111224555677888999999999999999998876532   223456677788888888999888888


Q ss_pred             hHHHHHhhhCHH---HHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccChHHHHHhHHHH---HHHhhcCCChHHHH
Q 009975          237 KVTKFCRILNPE---LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPI---FLSLLKDEFPDVRL  310 (521)
Q Consensus       237 ~l~~l~~~~~~~---~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~---l~~~l~d~~~~vr~  310 (521)
                      ++..+....+-.   .-...++|.+...+.+++.+|....+..++.++..-+......+++.+   +..+++..+.++|+
T Consensus       669 Ai~~I~sv~~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR  748 (975)
T COG5181         669 AICSIYSVHRFRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRR  748 (975)
T ss_pred             HHHHHhhhhcccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            887777665432   113457888888889999999999999999988665443333444444   34567889999999


Q ss_pred             HHHHHHHHhhhhhchhhHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChhhhHHHHHHHHHHHcCCCcHHHHHHH
Q 009975          311 NIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAA  390 (521)
Q Consensus       311 ~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a  390 (521)
                      +|.++++.+.+.+|+.    .++..+.+-++....+.|....-+++.+++.+|+-    .++|.++.-...++..|+...
T Consensus       749 ~A~~tfG~Is~aiGPq----dvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpf----sVlP~lm~dY~TPe~nVQnGv  820 (975)
T COG5181         749 NATETFGCISRAIGPQ----DVLDILLNNLKVQERQQRVCTSVAISIVAEYCGPF----SVLPTLMSDYETPEANVQNGV  820 (975)
T ss_pred             hhhhhhhhHHhhcCHH----HHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCch----hhHHHHHhcccCchhHHHHhH
Confidence            9999999999999985    45677777777777777877777888889988874    378888888888999999999


Q ss_pred             HHHHHHHHHHhCHHH--HHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcc---cChHHHhhcHHHHHHhhcCCCCchHH
Q 009975          391 ANNLKRLAEEFGPEW--AMQHITPQVLEMINNPHYLYRMTILRAISLLAPV---MGSEITCSRLLPVVINASKDRVPNIK  465 (521)
Q Consensus       391 ~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~---~~~~~~~~~il~~l~~~l~d~~~~VR  465 (521)
                      ++++.-+.+..|...  +...+.|.+.+.+.|.++-.|+.+...+.++.-.   .|.+...=++++.++.-.-++.|.|.
T Consensus       821 Lkam~fmFeyig~~s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gtg~eda~IHLlNllwpNIle~sPhvi  900 (975)
T COG5181         821 LKAMCFMFEYIGQASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGTGDEDAAIHLLNLLWPNILEPSPHVI  900 (975)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhhhhccCCCcHHH
Confidence            999999998887642  3466889999999999999999999999999853   44555566788999999999999999


Q ss_pred             HHHHHHHHHHHhhhchHHHHhhHHHHHHHhcCCCCccHHHHHHHHHH
Q 009975          466 FNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQ  512 (521)
Q Consensus       466 ~~a~~~l~~~~~~~~~~~~~~~~~~~l~~l~~D~~~~vr~~a~~al~  512 (521)
                      ++..+++..+.+.+|...+-.++...    +=.|..+||..-...+.
T Consensus       901 ~~~~Eg~e~~~~~lg~g~~m~Yv~qG----LFHPs~~VRk~ywtvyn  943 (975)
T COG5181         901 QSFDEGMESFATVLGSGAMMKYVQQG----LFHPSSTVRKRYWTVYN  943 (975)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHh----ccCchHHHHHHHHHHHh
Confidence            99999999999999876665554433    44677788765554444

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=99.84  E-value=7.9e-19  Score=183.64  Aligned_cols=274  Identities=20%  Similarity=0.185  Sum_probs=213.1

Q ss_pred             HHHHHHhhcCCChhHHHHHHHHHHHHhhhcChhhhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCccccchHH
Q 009975          138 MSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVP  217 (521)
Q Consensus       138 ~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~  217 (521)
                      ++.+...+.|+++.||..|+..|+.+..        +..++.+...++|+++.||..++..+..+....+       -.+
T Consensus       623 ~~~L~~~L~D~d~~VR~~Av~~L~~~~~--------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~-------~~~  687 (897)
T PRK13800        623 VAELAPYLADPDPGVRRTAVAVLTETTP--------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLP-------PAP  687 (897)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHhhhcc--------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC-------chH
Confidence            4566667789999999999999987642        3467778888899999999999999988754221       135


Q ss_pred             HHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccChHHHHHhHHHHH
Q 009975          218 AYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIF  297 (521)
Q Consensus       218 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l  297 (521)
                      .+...++|+++.||.+|+.+|+.+..  +.       ...+...+.|+++.||..++.+++.+..           .+.+
T Consensus       688 ~L~~~L~~~d~~VR~~A~~aL~~~~~--~~-------~~~l~~~L~D~d~~VR~~Av~aL~~~~~-----------~~~l  747 (897)
T PRK13800        688 ALRDHLGSPDPVVRAAALDVLRALRA--GD-------AALFAAALGDPDHRVRIEAVRALVSVDD-----------VESV  747 (897)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHhhcc--CC-------HHHHHHHhcCCCHHHHHHHHHHHhcccC-----------cHHH
Confidence            66777888999999999999988642  11       1234567799999999999999988631           1345


Q ss_pred             HHhhcCCChHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChhhhHHHHHHHHHH
Q 009975          298 LSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQ  377 (521)
Q Consensus       298 ~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~  377 (521)
                      ..++.|++++||..++.+|+.+...-      ...++.+..+++|+++.||..++..|+.+...       +.+.+.+..
T Consensus       748 ~~~l~D~~~~VR~~aa~aL~~~~~~~------~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~-------~~~~~~l~~  814 (897)
T PRK13800        748 AGAATDENREVRIAVAKGLATLGAGG------APAGDAVRALTGDPDPLVRAAALAALAELGCP-------PDDVAAATA  814 (897)
T ss_pred             HHHhcCCCHHHHHHHHHHHHHhcccc------chhHHHHHHHhcCCCHHHHHHHHHHHHhcCCc-------chhHHHHHH
Confidence            67899999999999999999886521      22367788889999999999999988766321       123345678


Q ss_pred             HcCCCcHHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChHHHhhcHHHHHHhhc
Q 009975          378 WLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINAS  457 (521)
Q Consensus       378 ~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l  457 (521)
                      .++|+++.||.+|+.+|+.+.        .+..++.|...++|+++.+|..++.+|+.+.   +    .+...+.+...+
T Consensus       815 aL~d~d~~VR~~Aa~aL~~l~--------~~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~---~----~~~a~~~L~~al  879 (897)
T PRK13800        815 ALRASAWQVRQGAARALAGAA--------ADVAVPALVEALTDPHLDVRKAAVLALTRWP---G----DPAARDALTTAL  879 (897)
T ss_pred             HhcCCChHHHHHHHHHHHhcc--------ccchHHHHHHHhcCCCHHHHHHHHHHHhccC---C----CHHHHHHHHHHH
Confidence            889999999999999998653        2346688888999999999999999999982   1    234567788999


Q ss_pred             CCCCchHHHHHHHHHHH
Q 009975          458 KDRVPNIKFNVAKVLQS  474 (521)
Q Consensus       458 ~d~~~~VR~~a~~~l~~  474 (521)
                      +|+++.||..|.++|..
T Consensus       880 ~D~d~~Vr~~A~~aL~~  896 (897)
T PRK13800        880 TDSDADVRAYARRALAH  896 (897)
T ss_pred             hCCCHHHHHHHHHHHhh
Confidence            99999999999999863

>PRK09687 putative lyase; Provisional

Probab=99.84  E-value=6.5e-19  Score=157.44  Aligned_cols=255  Identities=15%  Similarity=0.073  Sum_probs=196.9

Q ss_pred             hhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhh
Q 009975          175 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHI  254 (521)
Q Consensus       175 ~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~  254 (521)
                      .-.+.+...+.|++..||..++..|+.+.        .+.+++.+.++++|+++.+|..++.+|+.+...-..   ....
T Consensus        23 ~~~~~L~~~L~d~d~~vR~~A~~aL~~~~--------~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~---~~~a   91 (280)
T PRK09687         23 LNDDELFRLLDDHNSLKRISSIRVLQLRG--------GQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC---QDNV   91 (280)
T ss_pred             ccHHHHHHHHhCCCHHHHHHHHHHHHhcC--------cchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc---hHHH
Confidence            34455666778999999999999888653        356788888899999999999999999997652111   2345


Q ss_pred             hHHHHHh-ccCCcHHHHHHHHHHHHccccccChHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchhhHhhhHH
Q 009975          255 LPCVKEL-SSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLL  333 (521)
Q Consensus       255 ~~~l~~~-~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~  333 (521)
                      ++.+..+ .+|+++.||..++.++|.+...-.  .....+++.+...+.|+++.||..++.+|+.+..        +..+
T Consensus        92 ~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~--~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~--------~~ai  161 (280)
T PRK09687         92 FNILNNLALEDKSACVRASAINATGHRCKKNP--LYSPKIVEQSQITAFDKSTNVRFAVAFALSVIND--------EAAI  161 (280)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHhccccccc--ccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCC--------HHHH
Confidence            6777665 688999999999999998753211  1123456667778889999999999999987653        5678


Q ss_pred             HHHHHHhcCCChHHHHHHHHHhHHHHhhhChhhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHHHHHhhhHHH
Q 009975          334 PAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQ  413 (521)
Q Consensus       334 ~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~  413 (521)
                      +.+..+++|++|.||..++.+|+.+..  +    .+...+.+...+.|.++.||..|+.+|+.+-        ....+|.
T Consensus       162 ~~L~~~L~d~~~~VR~~A~~aLg~~~~--~----~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~--------~~~av~~  227 (280)
T PRK09687        162 PLLINLLKDPNGDVRNWAAFALNSNKY--D----NPDIREAFVAMLQDKNEEIRIEAIIGLALRK--------DKRVLSV  227 (280)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHhcCCC--C----CHHHHHHHHHHhcCCChHHHHHHHHHHHccC--------ChhHHHH
Confidence            889999999999999999999988721  1    2357788888899999999999999998753        2467888


Q ss_pred             HHhhhcCcchHHHHHHHHHHHHhhcccChHHHhhcHHHHHHhhcC-CCCchHHHHHHHHHHH
Q 009975          414 VLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASK-DRVPNIKFNVAKVLQS  474 (521)
Q Consensus       414 l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~-d~~~~VR~~a~~~l~~  474 (521)
                      |.+.+++++  +|..++.++|.+..        +..+|.+.++++ +++..|+..+.+++..
T Consensus       228 Li~~L~~~~--~~~~a~~ALg~ig~--------~~a~p~L~~l~~~~~d~~v~~~a~~a~~~  279 (280)
T PRK09687        228 LIKELKKGT--VGDLIIEAAGELGD--------KTLLPVLDTLLYKFDDNEIITKAIDKLKR  279 (280)
T ss_pred             HHHHHcCCc--hHHHHHHHHHhcCC--------HhHHHHHHHHHhhCCChhHHHHHHHHHhc
Confidence            888888877  46678888888864        467888988886 8899999999888764

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.81  E-value=7.3e-17  Score=147.86  Aligned_cols=396  Identities=17%  Similarity=0.188  Sum_probs=300.5

Q ss_pred             HHHhcCCCChHHHHHHHHhHHHHHHhhCchhhH----HHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcChh--hhhhh
Q 009975          102 YTQLCQDDMPMVRRSAASNLGKFAATVEPAHLK----TDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ--DCVAH  175 (521)
Q Consensus       102 l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~----~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~  175 (521)
                      +..-++|+-.+.|++|+..+..+++.+-...-.    ..+-.+..+...+.+.+.|+.+.-.+...+-.++.+  .+...
T Consensus         5 i~r~ltdKlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~~   84 (675)
T KOG0212|consen    5 IARGLTDKLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLEK   84 (675)
T ss_pred             hhhhhhhHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHHHH
Confidence            345567888999999999999999876543322    223335566667777777888777777776666654  35677


Q ss_pred             hHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCcc--ccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHH---HH
Q 009975          176 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPT--RMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE---LA  250 (521)
Q Consensus       176 l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~--~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~  250 (521)
                      ++|.+...+.|++..||..+|+.+..+++...++..  .+++...+-++..|.+..||.+ .+.+..+.+.+..+   .+
T Consensus        85 iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~-aeLLdRLikdIVte~~~tF  163 (675)
T KOG0212|consen   85 IVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGG-AELLDRLIKDIVTESASTF  163 (675)
T ss_pred             hhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccH-HHHHHHHHHHhcccccccc
Confidence            888888999999999999999999999998887654  3678899999999999999865 46666666655322   22


Q ss_pred             -HHhhhHHHHHhccCCcHHHHHHHHHHHHccccccChHH--HHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhch--
Q 009975          251 -IQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA--TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI--  325 (521)
Q Consensus       251 -~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~--  325 (521)
                       .+.++|.+...+.+.++..|...+.++..+-..-+-+.  +...+++.+++++.|++++||.-+-.+++.+...+..  
T Consensus       164 sL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P  243 (675)
T KOG0212|consen  164 SLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSP  243 (675)
T ss_pred             CHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCc
Confidence             46789999999999999999999999987654433332  3567899999999999999999999989888776542  


Q ss_pred             hh-HhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChhh--hHHHHHHHHHHHcCCCcH-HHHHHHHHHHHHHHHHh
Q 009975          326 DL-LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLQDKVY-SIRDAAANNLKRLAEEF  401 (521)
Q Consensus       326 ~~-~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~-~vr~~a~~~l~~l~~~~  401 (521)
                      .. -...+++.+..-..++++.++..++.++..+.+..|.+.  +.+.++..++.++.|++. ..+..+...-+.+...+
T Consensus       244 ~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~  323 (675)
T KOG0212|consen  244 SSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLV  323 (675)
T ss_pred             cccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHH
Confidence            22 125677777777788999999999999999999988874  346677777788888766 57777666655555555


Q ss_pred             CHHHH-----HhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChHH--HhhcHHHHHHhhcCCCCchHHHHHHHHHHH
Q 009975          402 GPEWA-----MQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI--TCSRLLPVVINASKDRVPNIKFNVAKVLQS  474 (521)
Q Consensus       402 ~~~~~-----~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~--~~~~il~~l~~~l~d~~~~VR~~a~~~l~~  474 (521)
                      +.+..     ...++..+...+.+.....|.+++.++..+....+.+.  +...+.+.+++.++|++..|-..++..+..
T Consensus       324 s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~  403 (675)
T KOG0212|consen  324 SSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLAS  403 (675)
T ss_pred             hhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHH
Confidence            43322     24677888889999999999999999999998777765  347789999999999999999999999999


Q ss_pred             HHhhhchHHHHhhHHHHHHHhcCC
Q 009975          475 LIPIVDQSMVEKTIRPCLVELTED  498 (521)
Q Consensus       475 ~~~~~~~~~~~~~~~~~l~~l~~D  498 (521)
                      ++..-....+.+.+...|..+..|
T Consensus       404 i~~s~~~~~~~~fl~sLL~~f~e~  427 (675)
T KOG0212|consen  404 ICSSSNSPNLRKFLLSLLEMFKED  427 (675)
T ss_pred             HhcCcccccHHHHHHHHHHHHhhh
Confidence            987643333334444444444444

>PTZ00429 beta-adaptin; Provisional

Probab=99.81  E-value=4.5e-15  Score=148.48  Aligned_cols=462  Identities=12%  Similarity=0.072  Sum_probs=284.9

Q ss_pred             hhHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHHHhHHHHHHHhhcCCCCcchhhhhhhhhhhcCCCChHHHHHHHHH
Q 009975           22 LPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSI  101 (521)
Q Consensus        22 ~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~p~i~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~~  101 (521)
                      ++-+.++..++|..+|+...-.+...++.-+ + ..-..++.+.+=+++++..+|..|++.++.+-   .+.....+.+.
T Consensus        70 F~dVvk~~~S~d~elKKLvYLYL~~ya~~~p-e-lalLaINtl~KDl~d~Np~IRaLALRtLs~Ir---~~~i~e~l~~~  144 (746)
T PTZ00429         70 FVDVVKLAPSTDLELKKLVYLYVLSTARLQP-E-KALLAVNTFLQDTTNSSPVVRALAVRTMMCIR---VSSVLEYTLEP  144 (746)
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHcccCh-H-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCC---cHHHHHHHHHH
Confidence            3333344445555566555555554444322 1 11133444444444556667777766665533   23346667777


Q ss_pred             HHHhcCCCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcChh--hhhhhhHHH
Q 009975          102 YTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ--DCVAHILPV  179 (521)
Q Consensus       102 l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~  179 (521)
                      +.+.+.|.+|-||+.|+-++..+....+.......+.+.+.+++.|.++.|...|+.++..+.+.-+..  .....+.. 
T Consensus       145 lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~l~~~~~~~-  223 (746)
T PTZ00429        145 LRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIESSNEWVNR-  223 (746)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhHHHHHHHHH-
Confidence            777777777888888877777776654432223445666667777777777777777777776543321  01111212 


Q ss_pred             HHHhcCCCChHHHHHHHHHHHHHHHHhCCC-ccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHH---HHHhhh
Q 009975          180 IVNFSQDKSWRVRYMVANQLYELCEAVGPE-PTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPEL---AIQHIL  255 (521)
Q Consensus       180 l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~-~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~---~~~~~~  255 (521)
                      +...+.+-++--+..+.+.+.   ...+.+ .....++..+...++..++.|...|++++-.+....+++.   ....+.
T Consensus       224 Ll~~L~e~~EW~Qi~IL~lL~---~y~P~~~~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~  300 (746)
T PTZ00429        224 LVYHLPECNEWGQLYILELLA---AQRPSDKESAETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTVRVN  300 (746)
T ss_pred             HHHHhhcCChHHHHHHHHHHH---hcCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHH
Confidence            222222222223334444442   221111 1123577777777888888999999998888776544332   122333


Q ss_pred             HHHHHhccCCcHHHHHHHHHHHHccccccChHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchhhHhhhHHHH
Q 009975          256 PCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPA  335 (521)
Q Consensus       256 ~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~  335 (521)
                      +.+..+. ..++.+|..++..+..+....+. .+..+ +..|.-..+|+. .||...+..+..++..-.   . ..++..
T Consensus       301 ~pLv~L~-ss~~eiqyvaLr~I~~i~~~~P~-lf~~~-~~~Ff~~~~Dp~-yIK~~KLeIL~~Lane~N---v-~~IL~E  372 (746)
T PTZ00429        301 TALLTLS-RRDAETQYIVCKNIHALLVIFPN-LLRTN-LDSFYVRYSDPP-FVKLEKLRLLLKLVTPSV---A-PEILKE  372 (746)
T ss_pred             HHHHHhh-CCCccHHHHHHHHHHHHHHHCHH-HHHHH-HHhhhcccCCcH-HHHHHHHHHHHHHcCccc---H-HHHHHH
Confidence            5555553 45667899998888777654432 22222 455556667775 589999888888876422   2 567788


Q ss_pred             HHHHhcCCChHHHHHHHHHhHHHHhhhChhhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHH
Q 009975          336 IVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVL  415 (521)
Q Consensus       336 l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~  415 (521)
                      |.++..+.+..++..++.+++.++..++.  ..+..+..++.++++...-+ ..++..+..+...+...    .+++.+.
T Consensus       373 L~eYa~d~D~ef~r~aIrAIg~lA~k~~~--~a~~cV~~Ll~ll~~~~~~v-~e~i~vik~IlrkyP~~----~il~~L~  445 (746)
T PTZ00429        373 LAEYASGVDMVFVVEVVRAIASLAIKVDS--VAPDCANLLLQIVDRRPELL-PQVVTAAKDIVRKYPEL----LMLDTLV  445 (746)
T ss_pred             HHHHhhcCCHHHHHHHHHHHHHHHHhChH--HHHHHHHHHHHHhcCCchhH-HHHHHHHHHHHHHCccH----HHHHHHH
Confidence            88888899999999999999999977654  35677888888887755433 45677777777665432    2445555


Q ss_pred             hhh---cCcchHHHHHHHHHHHHhhcccChHHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchHHHHhhHHHHH
Q 009975          416 EMI---NNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCL  492 (521)
Q Consensus       416 ~~l---~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~~~~~~~~l  492 (521)
                      ..+   .-.+...|.+.+|.+|..+..+..   .+.++..++.-+.+..+.||.+.+.+..++.-..+.+ ....+...|
T Consensus       446 ~~~~~~~i~e~~AKaaiiWILGEy~~~I~~---a~~~L~~~i~~f~~E~~~VqlqlLta~vKlfl~~p~~-~~~~l~~vL  521 (746)
T PTZ00429        446 TDYGADEVVEEEAKVSLLWMLGEYCDFIEN---GKDIIQRFIDTIMEHEQRVQLAILSAAVKMFLRDPQG-MEPQLNRVL  521 (746)
T ss_pred             HhhcccccccHHHHHHHHHHHHhhHhhHhh---HHHHHHHHHhhhccCCHHHHHHHHHHHHHHHhcCcHH-HHHHHHHHH
Confidence            432   224678899999999999876543   2456655566667778899999999988887764432 344556666


Q ss_pred             HHhcC-CCCccHHHHHHHHH
Q 009975          493 VELTE-DPDVDVRFFATQAI  511 (521)
Q Consensus       493 ~~l~~-D~~~~vr~~a~~al  511 (521)
                      ..+.+ |.+++||..|.--+
T Consensus       522 ~~~t~~~~d~DVRDRA~~Y~  541 (746)
T PTZ00429        522 ETVTTHSDDPDVRDRAFAYW  541 (746)
T ss_pred             HHHHhcCCChhHHHHHHHHH
Confidence            66644 57889999987543

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=99.80  E-value=2.9e-15  Score=145.23  Aligned_cols=429  Identities=16%  Similarity=0.213  Sum_probs=283.1

Q ss_pred             CChHHHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcCh
Q 009975           90 APDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP  169 (521)
Q Consensus        90 ~~~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~  169 (521)
                      ++++....+...+.++++|.+++|+..|++++|-+++.+++.......-.+...++.+ .+..|..+.-.|......+++
T Consensus        40 Ld~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le~~ve~L~~~~~s~-keq~rdissi~Lktvi~nl~P  118 (1233)
T KOG1824|consen   40 LDDDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLETIVENLCSNMLSG-KEQLRDISSIGLKTVIANLPP  118 (1233)
T ss_pred             ccccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhhhccc-hhhhccHHHHHHHHHHhcCCC
Confidence            3444466788899999999999999999999999999888766555555555554443 344465555555555555554


Q ss_pred             h-------hhhhhhHHHHHHhc--CCCChHHHHHHHHHHHHHHHHhCCCcc--ccchHHHHHHhcCCChHHHHHHHHHhH
Q 009975          170 Q-------DCVAHILPVIVNFS--QDKSWRVRYMVANQLYELCEAVGPEPT--RMDLVPAYVRLLRDNEAEVRIAAAGKV  238 (521)
Q Consensus       170 ~-------~~~~~l~~~l~~~~--~d~~~~vR~~~~~~l~~i~~~~~~~~~--~~~l~~~l~~~l~d~~~~vr~~a~~~l  238 (521)
                      .       ...+.+.|.+....  +.+...+|..++..++.+...+|.-..  -..++..+.--+..+...||+.|+.++
T Consensus       119 ~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l  198 (1233)
T KOG1824|consen  119 SSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITAL  198 (1233)
T ss_pred             ccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcchHHHHHHHHhhcccChHHHHHHHHHHHH
Confidence            1       23344666666543  345666999999999888887774332  234556666667778889999999999


Q ss_pred             HHHHhhhCHHHHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccChHH--HHHhHHHHHHHhh---cCCChHHHHHHH
Q 009975          239 TKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA--TIEQLLPIFLSLL---KDEFPDVRLNII  313 (521)
Q Consensus       239 ~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~--~~~~l~~~l~~~l---~d~~~~vr~~a~  313 (521)
                      +.++...+.+.+...+-..+..+.+..+...-+..+++++.++...|...  ..+.++|.+.+.+   +..+++.|+.++
T Consensus       199 ~~la~~~~~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~l  278 (1233)
T KOG1824|consen  199 GHLASSCNRDLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELREYCL  278 (1233)
T ss_pred             HHHHHhcCHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHHHHHHH
Confidence            99999988877655555555666665665555667788888887777644  2457889888888   778899999999


Q ss_pred             HHHHHhhhhhchhhH--hhhHHHHHHHHh----------------------------------cCCChHHHHHHHHHhHH
Q 009975          314 SKLDQVNQVIGIDLL--SQSLLPAIVELA----------------------------------EDRHWRVRLAIIEYIPL  357 (521)
Q Consensus       314 ~~l~~~~~~~~~~~~--~~~~~~~l~~~~----------------------------------~~~~~~vr~~~~~~l~~  357 (521)
                      ++++.+......+..  .+.++....+.+                                  +|-+|.||.++++++..
T Consensus       279 Qale~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a  358 (1233)
T KOG1824|consen  279 QALESFLRRCPKEILPHVPEIINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEA  358 (1233)
T ss_pred             HHHHHHHHhChhhhcccchHHHHHHHHHhccCCCCCCCCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHH
Confidence            999999876554321  123333332222                                  23379999999999987


Q ss_pred             HHhhhCh--hhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCH--------------------------------
Q 009975          358 LASQLGV--GFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP--------------------------------  403 (521)
Q Consensus       358 l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~--------------------------------  403 (521)
                      +...-.+  ..+.+.+-|.+...+++.+..|+.-.+.++-.+....+.                                
T Consensus       359 ~IsSR~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVk  438 (1233)
T KOG1824|consen  359 VISSRLEMLPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVK  438 (1233)
T ss_pred             HHhccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCcccccCchhhhccCCccchHHHHhhhHHHHH
Confidence            7644322  123445556666666666666665555554444332210                                


Q ss_pred             --------------------------------HHHHhhhHHHHHhhhcCcc--hHHHHHHHHHHHHhhcccChHHHh---
Q 009975          404 --------------------------------EWAMQHITPQVLEMINNPH--YLYRMTILRAISLLAPVMGSEITC---  446 (521)
Q Consensus       404 --------------------------------~~~~~~l~~~l~~~l~~~~--~~~r~~a~~~l~~l~~~~~~~~~~---  446 (521)
                                                      ......++|.+...++|.+  ...+..++.++..+....+++.|.   
T Consensus       439 ai~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~~fhp~~  518 (1233)
T KOG1824|consen  439 AIQKQLREKSVKTRQGCFLLLTELINVLPGALAQHIPSLVPGIIYSLNDKSSSSNLKIDALVFLYSALISHPPEVFHPHL  518 (1233)
T ss_pred             HHHHHHhhccccchhhHHHHHHHHHHhCcchhhhcccccchhhhhhcCCccchHHHHHHHHHHHHHHHhcCChhhcccch
Confidence                                            0011224444444444432  455666666666666656666654   


Q ss_pred             hcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhc---------h-HHHHhhHHHHHHHh-cCCCCccHHHHHHHHHHHHH
Q 009975          447 SRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD---------Q-SMVEKTIRPCLVEL-TEDPDVDVRFFATQAIQSID  515 (521)
Q Consensus       447 ~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~---------~-~~~~~~~~~~l~~l-~~D~~~~vr~~a~~al~~l~  515 (521)
                      +.+.|.+.....|+-+.|-..|+.+...++..+.         . +++...+--.+.++ .+|.|.+||..|..+++.+.
T Consensus       519 ~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i  598 (1233)
T KOG1824|consen  519 SALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQII  598 (1233)
T ss_pred             hhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHH
Confidence            3456777888899999998888888888776542         1 22323333344454 68999999999999999877


Q ss_pred             Hhhc
Q 009975          516 HVMM  519 (521)
Q Consensus       516 ~~~~  519 (521)
                      -.+|
T Consensus       599 ~~fg  602 (1233)
T KOG1824|consen  599 ANFG  602 (1233)
T ss_pred             HHHh
Confidence            6654

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.79  E-value=4.3e-15  Score=136.41  Aligned_cols=444  Identities=15%  Similarity=0.132  Sum_probs=311.9

Q ss_pred             hhhcCchhHHHHHHHHHHHHHHhhcCh----hHHHHhHHHHHHHhhcCCCCcchhhhh-hhhhhhcCCC--ChHHHHHHH
Q 009975           27 TLCTVEETCVRDKAVESLCRIGSQMRE----SDLVDWYIPLVKRLAAGEWFTARVSAC-GLFHIAYPSA--PDILKTELR   99 (521)
Q Consensus        27 ~l~~~~~~~vR~~a~~~l~~i~~~~~~----~~~~~~l~p~i~~~~~~~~~~~r~~~~-~~~~~~~~~~--~~~~~~~l~   99 (521)
                      +-++|+--+-|.+|.-.+..+.+.+-.    +++.+.+-....+.....+...|..+. ++......-.  .......++
T Consensus         7 r~ltdKlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~~iv   86 (675)
T KOG0212|consen    7 RGLTDKLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLEKIV   86 (675)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHHHHhh
Confidence            344566667799988888888887643    344433333445555544433343332 2222211111  112577888


Q ss_pred             HHHHHhcCCCChHHHHHHHHhHHHHHHhhCchh--hHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcChhh----hh
Q 009975          100 SIYTQLCQDDMPMVRRSAASNLGKFAATVEPAH--LKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQD----CV  173 (521)
Q Consensus       100 ~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~----~~  173 (521)
                      +.+..+.+|.+-.||..|++.+.++++....+.  +.+.+...+-++..|.+.+||.+| +.+..+.+.+..+.    ..
T Consensus        87 ~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~a-eLLdRLikdIVte~~~tFsL  165 (675)
T KOG0212|consen   87 PPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGA-ELLDRLIKDIVTESASTFSL  165 (675)
T ss_pred             HHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHH-HHHHHHHHHhccccccccCH
Confidence            888899999999999999999999998877653  678888999999999999998766 66666665544332    34


Q ss_pred             hhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCc--cccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHH--H
Q 009975          174 AHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP--TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE--L  249 (521)
Q Consensus       174 ~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~  249 (521)
                      +.++|++.+-+.+.++.+|...+.++.-+-..-+-+.  ..+.+++.+.++++|+..+||..+-.+++.+...+..+  .
T Consensus       166 ~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s  245 (675)
T KOG0212|consen  166 PEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSS  245 (675)
T ss_pred             HHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccc
Confidence            6699999999999999999999999875533222121  23679999999999999999999999898888876432  2


Q ss_pred             -HHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccChHHH--HHhHHHHHHHhhcCCCh-HHHHHHHHHHHHhhhhhch
Q 009975          250 -AIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDAT--IEQLLPIFLSLLKDEFP-DVRLNIISKLDQVNQVIGI  325 (521)
Q Consensus       250 -~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~--~~~l~~~l~~~l~d~~~-~vr~~a~~~l~~~~~~~~~  325 (521)
                       -.+.+++.+......+++.++..++.++..+.+..|++..  ...++..++.++.|.++ .++..+...-+.+.+..+.
T Consensus       246 ~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~  325 (675)
T KOG0212|consen  246 MDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSS  325 (675)
T ss_pred             cCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhh
Confidence             2355778888888999999999999999999999988653  34566667777777766 3555555444444443332


Q ss_pred             hhH-----hhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChhhh--HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Q 009975          326 DLL-----SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF--DDKLGALCMQWLQDKVYSIRDAAANNLKRLA  398 (521)
Q Consensus       326 ~~~-----~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~--~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~  398 (521)
                      +..     ...++..+.+.+.+.....|.++++++..+....+.+.+  .+.+.+.++.-+.|++.+|-..++..++.++
T Consensus       326 ~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~  405 (675)
T KOG0212|consen  326 ERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASIC  405 (675)
T ss_pred             hhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHh
Confidence            221     147888899999999999999999999999988888744  4678888899999999999999999999988


Q ss_pred             HHhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChHHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHH
Q 009975          399 EEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSL  475 (521)
Q Consensus       399 ~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~  475 (521)
                      ..-..... .+.+..+.+++....--++..+.-.+..++..+..+.+...+-..+..   .++-+--.....+|..+
T Consensus       406 ~s~~~~~~-~~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~lL~aE~IYr~~a~ILe~---e~nl~FAstMV~~Ln~i  478 (675)
T KOG0212|consen  406 SSSNSPNL-RKFLLSLLEMFKEDTKLLEVRGNLIIRQLCLLLNAERIYRSIADILER---EENLKFASTMVQALNTI  478 (675)
T ss_pred             cCcccccH-HHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHhCHHHHHHHHHHHHhc---cccchHHHHHHHHHHhh
Confidence            65432222 234445555666666666677777788888777777665554444433   23333344444555444

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=99.79  E-value=1.4e-14  Score=133.30  Aligned_cols=468  Identities=14%  Similarity=0.129  Sum_probs=291.3

Q ss_pred             HhhhhcCchhHHHHHHHHHHHHHHhhcChhHHHHhHHHHHHHhhcCC-CCcchhhhhhhh---------------hhhcC
Q 009975           25 LETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGE-WFTARVSACGLF---------------HIAYP   88 (521)
Q Consensus        25 l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~p~i~~~~~~~-~~~~r~~~~~~~---------------~~~~~   88 (521)
                      .++-.-++|+++|..|...+.++...    ++.+++.=..+.+++++ ....|..+-..+               ...+.
T Consensus        10 ~~n~vLspD~n~rl~aE~ql~~l~~~----dF~qf~~ll~qvl~d~ns~~~~Rm~agl~LKN~l~a~d~~~~~~~~qrW~   85 (858)
T COG5215          10 GKNHVLSPDPNARLRAEAQLLELQSG----DFEQFISLLVQVLCDLNSNDQLRMVAGLILKNSLHANDPELQKGCSQRWL   85 (858)
T ss_pred             HhcccCCCCCCccccHHHHHHHhccc----cHHHHHHHHHHHHhccCCcHHHHHHHHHHHhhhhhcCCHHHHHHHHHhhc
Confidence            34434468999999999988877653    22222222223344433 334454332222               12233


Q ss_pred             CCChHHHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCCCh-hHHHHHHHHHHHHhhhc
Q 009975           89 SAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQD-SVRLLAVEGCAALGKLL  167 (521)
Q Consensus        89 ~~~~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~-~vr~~a~~~l~~l~~~~  167 (521)
                      ..+.+.++.+.......+.++.|..-..|...++.++..--+...|+.++..+.....++.+ .+++.++.+++.+++..
T Consensus        86 ~~~~E~k~qvK~~al~aL~s~epr~~~~Aaql~aaIA~~Elp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~  165 (858)
T COG5215          86 GMRHESKEQVKGMALRALKSPEPRFCTMAAQLLAAIARMELPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESE  165 (858)
T ss_pred             cCCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhCccccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhcc
Confidence            35666788888888888999999999999999999998776677899999999888888766 78999999999999988


Q ss_pred             Chhhhhh---h-hHHHHHHhc-CCCChHHHHHHHHHHHHHHH----HhCCCccccchHHHHHHhcCCChHHHHHHHHHhH
Q 009975          168 EPQDCVA---H-ILPVIVNFS-QDKSWRVRYMVANQLYELCE----AVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKV  238 (521)
Q Consensus       168 ~~~~~~~---~-l~~~l~~~~-~d~~~~vR~~~~~~l~~i~~----~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l  238 (521)
                      .++....   . ++.+..... +.++..||.++..++..-.-    .+..+...+.++....+..+.++.+++.+|..+|
T Consensus       166 ~Pe~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl  245 (858)
T COG5215         166 APEDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCL  245 (858)
T ss_pred             CHHHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHH
Confidence            7753322   2 344444433 45788899999998866222    2223333456777777788889999999999999


Q ss_pred             HHHHhhhCH--HHHHHh-hhHHHHHhccCCcHHHHHHHHHHHHccccccChHHHHHhHHHHHHHhhcCCChHHHHHHHHH
Q 009975          239 TKFCRILNP--ELAIQH-ILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISK  315 (521)
Q Consensus       239 ~~l~~~~~~--~~~~~~-~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~  315 (521)
                      ..+....-.  ..+.+. +..+..+.+.+++..|...+++..+.++..--+-.....-+|        +.|.-..     
T Consensus       246 ~kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~p--------e~p~qn~-----  312 (858)
T COG5215         246 NKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLP--------EVPAQNH-----  312 (858)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcc--------cCchhhc-----
Confidence            988775311  112222 223334456777888888887777666521100000000011        0000000     


Q ss_pred             HHHhhhhhchhhHhhhHHHHHHHHhc-------CCChHHHHHHHHHhHHHHhhhChhhhHHHHHHHHHHHcCCCcHHHHH
Q 009975          316 LDQVNQVIGIDLLSQSLLPAIVELAE-------DRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRD  388 (521)
Q Consensus       316 l~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~  388 (521)
                        .++.    . -...++|.+.+++.       +.+|.+-.++..++..+++..|.....+ ++..+.+.+..++|.-|+
T Consensus       313 --~fa~----a-av~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd~i~~p-Vl~FvEqni~~~~w~nre  384 (858)
T COG5215         313 --GFAR----A-AVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGDKIMRP-VLGFVEQNIRSESWANRE  384 (858)
T ss_pred             --chHH----H-HHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhhHhHHH-HHHHHHHhccCchhhhHH
Confidence              0000    0 01345666655542       3468888888888888888877765444 666667778888888888


Q ss_pred             HHHHHHHHHHHHhCHH---HHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccCh----HHHhhcHHHHHHhhcCCCC
Q 009975          389 AAANNLKRLAEEFGPE---WAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS----EITCSRLLPVVINASKDRV  461 (521)
Q Consensus       389 ~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~----~~~~~~il~~l~~~l~d~~  461 (521)
                      ++..++|.+.+.-..+   .+..+.+|.+.....|+...++.++.++++.++++...    ..............+.| .
T Consensus       385 aavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~~i~p~~Hl~~~vsa~liGl~D-~  463 (858)
T COG5215         385 AAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAMIISPCGHLVLEVSASLIGLMD-C  463 (858)
T ss_pred             HHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHHhcCccccccHHHHHHHhhhhc-c
Confidence            8888888876532221   23456677777777788888888888888888875432    22222333344445555 4


Q ss_pred             chHHHHHHHHHHHHHhhhchHH---------HHhhHHHHHHHh--cCCCCccHHHHHHHHHHHHHHhh
Q 009975          462 PNIKFNVAKVLQSLIPIVDQSM---------VEKTIRPCLVEL--TEDPDVDVRFFATQAIQSIDHVM  518 (521)
Q Consensus       462 ~~VR~~a~~~l~~~~~~~~~~~---------~~~~~~~~l~~l--~~D~~~~vr~~a~~al~~l~~~~  518 (521)
                      +.+-.+..+....+..++.+..         +...++..|.+.  ..+.+.+.|..+-+|++++..+.
T Consensus       464 p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~  531 (858)
T COG5215         464 PFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILIC  531 (858)
T ss_pred             chHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhc
Confidence            5566666677767666654321         123333444332  23667788888888888776654

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.78  E-value=4.9e-15  Score=150.52  Aligned_cols=497  Identities=19%  Similarity=0.205  Sum_probs=328.6

Q ss_pred             HHhhhhHHhhhhcCchhHHHHHHHHHHHHHHhhcChhH-H---HHhHHHHHHHhhcCCCCcchhhhhhhhhhhcCCC---
Q 009975           18 AHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESD-L---VDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSA---   90 (521)
Q Consensus        18 ~~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~-~---~~~l~p~i~~~~~~~~~~~r~~~~~~~~~~~~~~---   90 (521)
                      ...+...+..++.+++++.|++++-=+-.+.+.++... +   .+++...+..+..|++.-.+-.|..-++..|+-.   
T Consensus       816 ~~~~~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd~~  895 (1702)
T KOG0915|consen  816 ETIILKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGDSS  895 (1702)
T ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCCch
Confidence            34577888899999999999999988888887776221 1   1233333333333332212211111111111100   


Q ss_pred             -------------------------------------Ch-----HHHHHHH------------HHHHHhcCC-CChHHHH
Q 009975           91 -------------------------------------PD-----ILKTELR------------SIYTQLCQD-DMPMVRR  115 (521)
Q Consensus        91 -------------------------------------~~-----~~~~~l~------------~~l~~l~~~-~~~~vr~  115 (521)
                                                           ++     .+.+++.            --+.++..+ ..|.=|+
T Consensus       896 ~k~~LV~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~qPdLVYKFM~LAnh~A~wnSk~  975 (1702)
T KOG0915|consen  896 LKKSLVDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLGQPDLVYKFMQLANHNATWNSKK  975 (1702)
T ss_pred             hHHHHHHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcCChHHHHHHHHHhhhhchhhccc
Confidence                                                 00     0233333            334444444 3678899


Q ss_pred             HHHHhHHHHHHhhCc--hhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcC--hhhhhhhhHHHHHHhcCCCChHH
Q 009975          116 SAASNLGKFAATVEP--AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLE--PQDCVAHILPVIVNFSQDKSWRV  191 (521)
Q Consensus       116 ~a~~~l~~l~~~~~~--~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~--~~~~~~~l~~~l~~~~~d~~~~v  191 (521)
                      .|+..++.+++..++  +.+...++|-+.+.--|++..|+.+-..+|+.+..--.  -+.+.++|+.-+...+.+.-|+|
T Consensus       976 GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRV 1055 (1702)
T KOG0915|consen  976 GAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRV 1055 (1702)
T ss_pred             chhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHH
Confidence            999999999988765  34677889999999999999999999999998875421  14567788888888999999999


Q ss_pred             HHHHHHHHHHHHHHhCCCccc---cchHHHHHHhcCCChHHHHHHHHHhHHHHHhhh----------CHHHHHHhhhHHH
Q 009975          192 RYMVANQLYELCEAVGPEPTR---MDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRIL----------NPELAIQHILPCV  258 (521)
Q Consensus       192 R~~~~~~l~~i~~~~~~~~~~---~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~----------~~~~~~~~~~~~l  258 (521)
                      |.++|-++..+.+.-+.+...   ++++-.+.+...|-.+.||.+|-.+...+++.+          ....+...++|++
T Consensus      1056 ReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfL 1135 (1702)
T KOG0915|consen 1056 REASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFL 1135 (1702)
T ss_pred             HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHH
Confidence            999999999998765544333   345555666677778899999877776666654          1234566788887


Q ss_pred             HHh-ccCCcHHHHHHHHHHHHccccccChHH--HHHhHHHHHHHhhcCCChHH-------------------HHHHH---
Q 009975          259 KEL-SSDSSQHVRSALASVIMGMAPLLGKDA--TIEQLLPIFLSLLKDEFPDV-------------------RLNII---  313 (521)
Q Consensus       259 ~~~-~~d~~~~vr~~~~~~l~~i~~~~~~~~--~~~~l~~~l~~~l~d~~~~v-------------------r~~a~---  313 (521)
                      ..- .-.+-..||..++..+..+++..|...  ...+++|.+......-++.|                   |..++   
T Consensus      1136 l~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~akss 1215 (1702)
T KOG0915|consen 1136 LDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSS 1215 (1702)
T ss_pred             hccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCC
Confidence            532 236667899999999999988888743  34578888888777665554                   22222   


Q ss_pred             ---HHHHHhhhhhchhhHhhhHHHHHHHHhcC-CChHHHHHHHHHhHHHHhhhChh--hhHHHHHHHHHHHcCCCcHHHH
Q 009975          314 ---SKLDQVNQVIGIDLLSQSLLPAIVELAED-RHWRVRLAIIEYIPLLASQLGVG--FFDDKLGALCMQWLQDKVYSIR  387 (521)
Q Consensus       314 ---~~l~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr  387 (521)
                         ++++.....+....+ +.++|.+.++... -.-..|..++..+..++..+|.+  ++..+++..++..++|.++.+|
T Consensus      1216 pmmeTi~~ci~~iD~~vL-eelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~sgKll~al~~g~~dRNesv~ 1294 (1702)
T KOG0915|consen 1216 PMMETINKCINYIDISVL-EELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPYSGKLLRALFPGAKDRNESVR 1294 (1702)
T ss_pred             cHHHHHHHHHHhhhHHHH-HHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcchhHHHHHHhhccccccHHHH
Confidence               223333444444444 7888988887644 45667888899999999999876  5778899999999999999999


Q ss_pred             HHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccCh--HHHhhcHHHHHHhhcCCCCchHH
Q 009975          388 DAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS--EITCSRLLPVVINASKDRVPNIK  465 (521)
Q Consensus       388 ~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~--~~~~~~il~~l~~~l~d~~~~VR  465 (521)
                      .+...+++.++..-.++....-+-..+..++.+... .+..++..+..++.....  +.+...++|.++-...+..    
T Consensus      1295 kafAsAmG~L~k~Ss~dq~qKLie~~l~~~l~k~es-~~siscatis~Ian~s~e~Lkn~asaILPLiFLa~~ee~---- 1369 (1702)
T KOG0915|consen 1295 KAFASAMGYLAKFSSPDQMQKLIETLLADLLGKDES-LKSISCATISNIANYSQEMLKNYASAILPLIFLAMHEEE---- 1369 (1702)
T ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHHHhccCCC-ccchhHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHhHHH----
Confidence            999999999998776655443333344444443222 124445555544443222  2356789999887766651    


Q ss_pred             HHHHHHHHHHHhhh-----ch-H-HHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHHhhcc
Q 009975          466 FNVAKVLQSLIPIV-----DQ-S-MVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMMS  520 (521)
Q Consensus       466 ~~a~~~l~~~~~~~-----~~-~-~~~~~~~~~l~~l~~D~~~~vr~~a~~al~~l~~~~~~  520 (521)
                      .+-......+...+     |. + ...+.+.+...+..++..+.+|..+++++..++....+
T Consensus      1370 Ka~q~Lw~dvW~e~vsggagtvrl~~~eiLn~iceni~nn~~w~lr~q~Akai~~~a~~~ss 1431 (1702)
T KOG0915|consen 1370 KANQELWNDVWAELVSGGAGTVRLYLLEILNLICENITNNESWKLRKQAAKAIRVIAEGLSS 1431 (1702)
T ss_pred             HHHHHHHHHHHHHhCCCCcchhhhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHcccccc
Confidence            12223333333222     11 2 23355667777778888999999999999888765544

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.78  E-value=9.9e-17  Score=159.00  Aligned_cols=298  Identities=20%  Similarity=0.219  Sum_probs=212.3

Q ss_pred             hhHHHHHHHHHHHHhhhcChhhhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCC------CccccchHHHHHHhc
Q 009975          150 DSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP------EPTRMDLVPAYVRLL  223 (521)
Q Consensus       150 ~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~------~~~~~~l~~~l~~~l  223 (521)
                      ...|..|++.+..++.++.++...+.++|.+..+..|+...||..|+..+.++...+.+      ..+++.++|.+..++
T Consensus       437 ~~tK~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~  516 (1431)
T KOG1240|consen  437 IQTKLAALELLQELSTYIDDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHLL  516 (1431)
T ss_pred             chhHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhhh
Confidence            45577777777777777777777777777777777777777777777777776665542      233456777777777


Q ss_pred             CC-ChHHHHHHHHHhHHHHHhhhCHHHHHHhhhHHHH--HhccCCcHHHHHHHHHHHHccccccChHHHHHhHHHHHHHh
Q 009975          224 RD-NEAEVRIAAAGKVTKFCRILNPELAIQHILPCVK--ELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSL  300 (521)
Q Consensus       224 ~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~--~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~  300 (521)
                      .| ....||.+-+.+|+.++.....  |.+.. ..+.  .+.++++..       ..+.-...-+.....+.+-..+..+
T Consensus       517 ~d~~~~~vRiayAsnla~LA~tA~r--Fle~~-q~~~~~g~~n~~nse-------t~~~~~~~~~~~~L~~~V~~~v~sL  586 (1431)
T KOG1240|consen  517 NDSSAQIVRIAYASNLAQLAKTAYR--FLELT-QELRQAGMLNDPNSE-------TAPEQNYNTELQALHHTVEQMVSSL  586 (1431)
T ss_pred             ccCccceehhhHHhhHHHHHHHHHH--HHHHH-HHHHhcccccCcccc-------cccccccchHHHHHHHHHHHHHHHH
Confidence            77 5567777777777777764321  11100 0010  112333221       0000000001111223344566788


Q ss_pred             hcCCChHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChhhhHHHHHHHHHHHcC
Q 009975          301 LKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQ  380 (521)
Q Consensus       301 l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~  380 (521)
                      +.|+.+.||++.++++..++..+|.+.-.+.+++++..+++|++|..|.++.+.+..++-.+|.....++++|++.+.+.
T Consensus       587 lsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~seyllPLl~Q~lt  666 (1431)
T KOG1240|consen  587 LSDSPPIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSEYLLPLLQQGLT  666 (1431)
T ss_pred             HcCCchHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHHHHHHHHHHHhcc
Confidence            99999999999999999999999988877889999999999999999999999999999999998889999999999999


Q ss_pred             CCcHHHHHHHHHHHHHHHHHhCH-HHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChHHHhhcHHHHHHhhc
Q 009975          381 DKVYSIRDAAANNLKRLAEEFGP-EWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINAS  457 (521)
Q Consensus       381 d~~~~vr~~a~~~l~~l~~~~~~-~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l  457 (521)
                      |.++.|-..|+.++..+++.--- .....+++.....++-.||..+|.+++..+..+...++.-+..-.++|.+-..+
T Consensus       667 D~EE~Viv~aL~~ls~Lik~~ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls~advyc~l~P~irpfl  744 (1431)
T KOG1240|consen  667 DGEEAVIVSALGSLSILIKLGLLRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQLSAADVYCKLMPLIRPFL  744 (1431)
T ss_pred             CcchhhHHHHHHHHHHHHHhcccchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhhhhhhheEEeehhhHHhh
Confidence            99999999999999998864211 122345666666788899999999999999999998887655444444444333

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.76  E-value=1.8e-15  Score=153.66  Aligned_cols=336  Identities=17%  Similarity=0.159  Sum_probs=240.7

Q ss_pred             hhHHHHHHhcCC-CChHHHHHHHHHHHHHHHHhCCCc--cccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhC--HHH
Q 009975          175 HILPVIVNFSQD-KSWRVRYMVANQLYELCEAVGPEP--TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN--PEL  249 (521)
Q Consensus       175 ~l~~~l~~~~~d-~~~~vR~~~~~~l~~i~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~--~~~  249 (521)
                      +++--+.++.++ ..|.-|+.++-.++.++...+...  ....++|-+.++-.|++..|+.+....+..+...-.  -+.
T Consensus       956 dLVYKFM~LAnh~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~ 1035 (1702)
T KOG0915|consen  956 DLVYKFMQLANHNATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDE 1035 (1702)
T ss_pred             HHHHHHHHHhhhhchhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHH
Confidence            344445555554 689999999999999998776543  346899999999999999999999988888765321  124


Q ss_pred             HHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccChHHHHHhHHHH---HHHhhcCCChHHHHHHHHH---HHHhhhhh
Q 009975          250 AIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPI---FLSLLKDEFPDVRLNIISK---LDQVNQVI  323 (521)
Q Consensus       250 ~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~---l~~~l~d~~~~vr~~a~~~---l~~~~~~~  323 (521)
                      +.+.++.-+...+.++.|+||++.+-++..+.+.-+.+...+++..+   ++..+.|-.+.||.++-.+   +++++-.+
T Consensus      1036 y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~ 1115 (1702)
T KOG0915|consen 1036 YLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRI 1115 (1702)
T ss_pred             HHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            45566666677778999999999999999998877766665555444   4455567677888776544   44443322


Q ss_pred             c-------hhhHhhhHHHHHHH-HhcCCChHHHHHHHHHhHHHHhhhChh--hhHHHHHHHHHHHcCCCcHHH-------
Q 009975          324 G-------IDLLSQSLLPAIVE-LAEDRHWRVRLAIIEYIPLLASQLGVG--FFDDKLGALCMQWLQDKVYSI-------  386 (521)
Q Consensus       324 ~-------~~~~~~~~~~~l~~-~~~~~~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~v-------  386 (521)
                      +       .......++|.+.+ -.-+.-..||...+..+..+++..|..  .+.++++|.+++....-++.|       
T Consensus      1116 ~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r 1195 (1702)
T KOG0915|consen 1116 CDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLR 1195 (1702)
T ss_pred             cccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHHHh
Confidence            2       12234778888876 233777899999999999999999875  556788888888776544433       


Q ss_pred             ------------HHHHH------HHHHHHHHHhCHHHHHhhhHHHHHhhhcCc-chHHHHHHHHHHHHhhcccChHH--H
Q 009975          387 ------------RDAAA------NNLKRLAEEFGPEWAMQHITPQVLEMINNP-HYLYRMTILRAISLLAPVMGSEI--T  445 (521)
Q Consensus       387 ------------r~~a~------~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~-~~~~r~~a~~~l~~l~~~~~~~~--~  445 (521)
                                  |..++      +++..++.+... ...++++|.+.+.+..+ .-..|..+..++..+...+|.+.  +
T Consensus      1196 ~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~-~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~ 1274 (1702)
T KOG0915|consen 1196 LINIETEALDTLRASAAKSSPMMETINKCINYIDI-SVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPY 1274 (1702)
T ss_pred             hhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhH-HHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcc
Confidence                        22222      223333322221 23577889888877654 56778899999999998888654  6


Q ss_pred             hhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchHHHHhhHHHHHHHhcCCCCccHHHHHHHHHH
Q 009975          446 CSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQ  512 (521)
Q Consensus       446 ~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~~~~~~~~l~~l~~D~~~~vr~~a~~al~  512 (521)
                      ...++..++.+++|.++.||.+.+.+.+.++..-.++..+..+...+..+..+.++.- ..++.++-
T Consensus      1275 sgKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~dq~qKLie~~l~~~l~k~es~~-siscatis 1340 (1702)
T KOG0915|consen 1275 SGKLLRALFPGAKDRNESVRKAFASAMGYLAKFSSPDQMQKLIETLLADLLGKDESLK-SISCATIS 1340 (1702)
T ss_pred             hhHHHHHHhhccccccHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhccCCCcc-chhHHHHH
Confidence            6789999999999999999999999999999987777777777777776665554432 34444433

>PTZ00429 beta-adaptin; Provisional

Probab=99.75  E-value=1.1e-13  Score=138.51  Aligned_cols=366  Identities=15%  Similarity=0.100  Sum_probs=232.9

Q ss_pred             HHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcChhhhhh
Q 009975           95 KTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVA  174 (521)
Q Consensus        95 ~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~  174 (521)
                      ...+++-+..+++.++..+|+-+--.+...++..+  +..-..+..+.+=++|+++.+|..|+++++.+..    ....+
T Consensus        66 vS~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~p--elalLaINtl~KDl~d~Np~IRaLALRtLs~Ir~----~~i~e  139 (746)
T PTZ00429         66 VSYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQP--EKALLAVNTFLQDTTNSSPVVRALAVRTMMCIRV----SSVLE  139 (746)
T ss_pred             chHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccCh--HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCCc----HHHHH
Confidence            45677777777788888888888777776654322  1222335556666678888999998888876542    33566


Q ss_pred             hhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHH-HHHHh
Q 009975          175 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE-LAIQH  253 (521)
Q Consensus       175 ~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~-~~~~~  253 (521)
                      .+.+.+.+.+.|+++.||+.|+-++.++....++......+++.+.+++.|.++.|...|+.+|..+.+..+.. .....
T Consensus       140 ~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~l~~~  219 (746)
T PTZ00429        140 YTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIESSNE  219 (746)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhHHHHH
Confidence            77788888889999999999999888886644433334567888888889999999999999888887654321 11222


Q ss_pred             hhHHHHHhccCCcHHHHHHHHHHHHccccccChHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchhhHh---h
Q 009975          254 ILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLS---Q  330 (521)
Q Consensus       254 ~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~---~  330 (521)
                      .+..+...+.+-+++-+...++.+....+.  .+.....++..+...++..++.|...|+..+-.+.....++...   .
T Consensus       220 ~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~--~~~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~  297 (746)
T PTZ00429        220 WVNRLVYHLPECNEWGQLYILELLAAQRPS--DKESAETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTV  297 (746)
T ss_pred             HHHHHHHHhhcCChHHHHHHHHHHHhcCCC--CcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHH
Confidence            333344444555566666777666543221  12224567777788888888889888888888776544333221   1


Q ss_pred             hHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChhhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHHHHHhhh
Q 009975          331 SLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHI  410 (521)
Q Consensus       331 ~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l  410 (521)
                      .+.+.+..+ .+.++.+|..++..+..+.... +..+.++ +..++...+|+.. ||...++.+-.++..-.    .+.+
T Consensus       298 rl~~pLv~L-~ss~~eiqyvaLr~I~~i~~~~-P~lf~~~-~~~Ff~~~~Dp~y-IK~~KLeIL~~Lane~N----v~~I  369 (746)
T PTZ00429        298 RVNTALLTL-SRRDAETQYIVCKNIHALLVIF-PNLLRTN-LDSFYVRYSDPPF-VKLEKLRLLLKLVTPSV----APEI  369 (746)
T ss_pred             HHHHHHHHh-hCCCccHHHHHHHHHHHHHHHC-HHHHHHH-HHhhhcccCCcHH-HHHHHHHHHHHHcCccc----HHHH
Confidence            233344444 3456778888888887777654 3334333 4555556667665 77777777766654322    2446


Q ss_pred             HHHHHhhhcCcchHHHHHHHHHHHHhhcccChHHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhh
Q 009975          411 TPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIV  479 (521)
Q Consensus       411 ~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~  479 (521)
                      +..|.++..+.+...+..++.++|.++..+..  ..+.++..+.+++++....+ ..++.++..+...+
T Consensus       370 L~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~~--~a~~cV~~Ll~ll~~~~~~v-~e~i~vik~Ilrky  435 (746)
T PTZ00429        370 LKELAEYASGVDMVFVVEVVRAIASLAIKVDS--VAPDCANLLLQIVDRRPELL-PQVVTAAKDIVRKY  435 (746)
T ss_pred             HHHHHHHhhcCCHHHHHHHHHHHHHHHHhChH--HHHHHHHHHHHHhcCCchhH-HHHHHHHHHHHHHC
Confidence            66667777777777778888888887765432  34556666666665543322 24455555554443

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.69  E-value=1.3e-13  Score=128.85  Aligned_cols=338  Identities=14%  Similarity=0.133  Sum_probs=246.9

Q ss_pred             HHHHHhhcCCChhHHHHHHHHHHHHhhhcCh----hhhhhhhHHHHHHhcC-CCChHHHHHHHHHHHHHHHHh---CCCc
Q 009975          139 SIFEDLTQDDQDSVRLLAVEGCAALGKLLEP----QDCVAHILPVIVNFSQ-DKSWRVRYMVANQLYELCEAV---GPEP  210 (521)
Q Consensus       139 ~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~~~~-d~~~~vR~~~~~~l~~i~~~~---~~~~  210 (521)
                      +.+.....+++...+..+...+..+.+.-..    +....-++|.+..++. +.++.++..++.++..|+..-   ....
T Consensus        69 ~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~v  148 (514)
T KOG0166|consen   69 ELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVV  148 (514)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhcccc
Confidence            3333344444444466666666555544221    1233457777777664 778999999999999998632   2344


Q ss_pred             cccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHH---HHHHhhhHHHHHhccCCcH-HHHHHHHHHHHccccccCh
Q 009975          211 TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE---LAIQHILPCVKELSSDSSQ-HVRSALASVIMGMAPLLGK  286 (521)
Q Consensus       211 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~~~~l~~~~~d~~~-~vr~~~~~~l~~i~~~~~~  286 (521)
                      .....+|.|.+++.+++..|++-|+.+|+.++...+..   .....+++.+..++..+.. ...+.+.+++.+++....+
T Consensus       149 v~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P  228 (514)
T KOG0166|consen  149 VDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNP  228 (514)
T ss_pred             ccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCC
Confidence            55788999999999999999999999999988764332   1223355666666655544 6777889999999876632


Q ss_pred             ---HHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhch---hhHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHh
Q 009975          287 ---DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS  360 (521)
Q Consensus       287 ---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~  360 (521)
                         -.....++|.+..++.+.+++|...|++++..+......   ..+...+.|.+.+++.+.+..++..++.+++.++.
T Consensus       229 ~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvt  308 (514)
T KOG0166|consen  229 SPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVT  308 (514)
T ss_pred             CCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceee
Confidence               234568999999999999999999999999988754321   12335778999999999999999999999998765


Q ss_pred             hhChh---hhHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHHHHhCHH-----HHHhhhHHHHHhhhcCcchHHHHHHHH
Q 009975          361 QLGVG---FFDDKLGALCMQWLQ-DKVYSIRDAAANNLKRLAEEFGPE-----WAMQHITPQVLEMINNPHYLYRMTILR  431 (521)
Q Consensus       361 ~~~~~---~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~-----~~~~~l~~~l~~~l~~~~~~~r~~a~~  431 (521)
                      .-+..   ......+|.+..++. .+...+|+.|+..++.+..  |..     .+...++|.|...+...+++.|..|++
T Consensus       309 G~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItA--G~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAaw  386 (514)
T KOG0166|consen  309 GSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITA--GNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAW  386 (514)
T ss_pred             ccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhc--CCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHH
Confidence            43332   223457888888888 5666799999999999976  332     234679999999999999999999999


Q ss_pred             HHHHhhcccChHHH----hhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhh
Q 009975          432 AISLLAPVMGSEIT----CSRLLPVVINASKDRVPNIKFNVAKVLQSLIPI  478 (521)
Q Consensus       432 ~l~~l~~~~~~~~~----~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~  478 (521)
                      +++.+......+..    ...+++.+..+|.-++..+-..++.++..+.+.
T Consensus       387 aIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~  437 (514)
T KOG0166|consen  387 AISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKV  437 (514)
T ss_pred             HHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHH
Confidence            99999986555442    245777788888666666666788888877654

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.68  E-value=1.9e-15  Score=150.13  Aligned_cols=257  Identities=18%  Similarity=0.218  Sum_probs=189.2

Q ss_pred             HHHHHHHHHhHHHHHhhhCHHHHHHhhhHHHHHhccCCcHHHHHHHHHHHHcccccc------ChHHHHHhHHHHHHHhh
Q 009975          228 AEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLL------GKDATIEQLLPIFLSLL  301 (521)
Q Consensus       228 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~------~~~~~~~~l~~~l~~~l  301 (521)
                      ...|.+|++.|..++..+..+...+.++|++..++.|+...||..|+.++..+....      ....+.++++|.+..++
T Consensus       437 ~~tK~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~  516 (1431)
T KOG1240|consen  437 IQTKLAALELLQELSTYIDDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHLL  516 (1431)
T ss_pred             chhHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhhh
Confidence            345566666666666666666666666666666666666666666666666554322      12334566666666666


Q ss_pred             cC-CChHHHHHHHHHHHHhhhhhc-------------------------------hhhHhhhHHHHHHHHhcCCChHHHH
Q 009975          302 KD-EFPDVRLNIISKLDQVNQVIG-------------------------------IDLLSQSLLPAIVELAEDRHWRVRL  349 (521)
Q Consensus       302 ~d-~~~~vr~~a~~~l~~~~~~~~-------------------------------~~~~~~~~~~~l~~~~~~~~~~vr~  349 (521)
                      .| ....||.+.+.+++.++....                               ...+.+.+-.....++.|+.+-||.
T Consensus       517 ~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~~Vkr  596 (1431)
T KOG1240|consen  517 NDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDSPPIVKR  596 (1431)
T ss_pred             ccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCCchHHHH
Confidence            66 455566666666665543310                               1123334445556678899999999


Q ss_pred             HHHHHhHHHHhhhChhhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCcchHHHHHH
Q 009975          350 AIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTI  429 (521)
Q Consensus       350 ~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a  429 (521)
                      +.++.+..++..+|++.-.+.+++.+..+|+|.+|.+|.+-++.+..++-..|.....+.++|.|.+.+.|+...|-..|
T Consensus       597 ~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~seyllPLl~Q~ltD~EE~Viv~a  676 (1431)
T KOG1240|consen  597 ALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSEYLLPLLQQGLTDGEEAVIVSA  676 (1431)
T ss_pred             HHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHHHHHHHHHHHhccCcchhhHHHH
Confidence            99999999999999998889999999999999999999999988887776667665678899999999999999999999


Q ss_pred             HHHHHHhhcc-cChHHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchHHH
Q 009975          430 LRAISLLAPV-MGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMV  484 (521)
Q Consensus       430 ~~~l~~l~~~-~~~~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~  484 (521)
                      +.++..+++. +=.+...-.++..+..+|..|+..||.+++..+..+...++....
T Consensus       677 L~~ls~Lik~~ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls~adv  732 (1431)
T KOG1240|consen  677 LGSLSILIKLGLLRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQLSAADV  732 (1431)
T ss_pred             HHHHHHHHHhcccchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhhhhhhh
Confidence            9999999872 222334566777888889999999999999999999888766543

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.67  E-value=4.9e-14  Score=131.57  Aligned_cols=341  Identities=16%  Similarity=0.139  Sum_probs=253.4

Q ss_pred             HHHHHHhcCCCChHHHHHHHHHHHHHHHHhCC----CccccchHHHHHHhcC-CChHHHHHHHHHhHHHHHhhhCHH---
Q 009975          177 LPVIVNFSQDKSWRVRYMVANQLYELCEAVGP----EPTRMDLVPAYVRLLR-DNEAEVRIAAAGKVTKFCRILNPE---  248 (521)
Q Consensus       177 ~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~----~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~---  248 (521)
                      .+.+.....+.++..+..+...+..+...-..    ......++|.+++++. +.++.++..|+.+|..++......   
T Consensus        68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~  147 (514)
T KOG0166|consen   68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKV  147 (514)
T ss_pred             hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccc
Confidence            45555555555666677777776666543222    1123578999999996 777999999999999998854332   


Q ss_pred             HHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccCh---HHHHHhHHHHHHHhhcCCCh-HHHHHHHHHHHHhhhhhc
Q 009975          249 LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK---DATIEQLLPIFLSLLKDEFP-DVRLNIISKLDQVNQVIG  324 (521)
Q Consensus       249 ~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~---~~~~~~l~~~l~~~l~d~~~-~vr~~a~~~l~~~~~~~~  324 (521)
                      ......+|.+..++.+++..|++.++++++.++-.-..   -.....+++.++.++..+.. ...+.+.+++..++..-.
T Consensus       148 vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~  227 (514)
T KOG0166|consen  148 VVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKN  227 (514)
T ss_pred             cccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCC
Confidence            22334789999999999999999999999999843321   11223456777777776655 678889999999987653


Q ss_pred             h--h-hHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChh---hhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Q 009975          325 I--D-LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG---FFDDKLGALCMQWLQDKVYSIRDAAANNLKRLA  398 (521)
Q Consensus       325 ~--~-~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~  398 (521)
                      +  . .....++|.+..++.+.+..|...++.+++.+.....+.   .....++|.+..+|..++..|+..|+.++|.++
T Consensus       228 P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIv  307 (514)
T KOG0166|consen  228 PSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIV  307 (514)
T ss_pred             CCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhcccee
Confidence            2  1 233788999999999999999999999999998775543   233557899999999999999999999999976


Q ss_pred             HHhCHH---HHHhhhHHHHHhhhc-CcchHHHHHHHHHHHHhhcccC---hHHHhhcHHHHHHhhcCCCCchHHHHHHHH
Q 009975          399 EEFGPE---WAMQHITPQVLEMIN-NPHYLYRMTILRAISLLAPVMG---SEITCSRLLPVVINASKDRVPNIKFNVAKV  471 (521)
Q Consensus       399 ~~~~~~---~~~~~l~~~l~~~l~-~~~~~~r~~a~~~l~~l~~~~~---~~~~~~~il~~l~~~l~d~~~~VR~~a~~~  471 (521)
                      ...+..   .+....+|.+..++. ++...+|..|+++++.+...-.   ...+...++|.++.+++......|..|+++
T Consensus       308 tG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawa  387 (514)
T KOG0166|consen  308 TGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWA  387 (514)
T ss_pred             eccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHH
Confidence            433221   234567889998877 6677799999999999987211   123456899999999999999999999999


Q ss_pred             HHHHHhhhchHHH----HhhHHHHHHHhcCCCCccHHHHHHHHHHHHHHh
Q 009975          472 LQSLIPIVDQSMV----EKTIRPCLVELTEDPDVDVRFFATQAIQSIDHV  517 (521)
Q Consensus       472 l~~~~~~~~~~~~----~~~~~~~l~~l~~D~~~~vr~~a~~al~~l~~~  517 (521)
                      ++.+.....++..    ..-+++.+-.++.-+|.++-..+..+++.+.+.
T Consensus       388 IsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~  437 (514)
T KOG0166|consen  388 ISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKV  437 (514)
T ss_pred             HHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHH
Confidence            9998876554432    244666777777777888878888888877654

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]

Probab=99.59  E-value=4.7e-10  Score=111.72  Aligned_cols=423  Identities=19%  Similarity=0.171  Sum_probs=265.1

Q ss_pred             HHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhc-CCChhHHHHHHHHHHHHhhh-cChhh
Q 009975           94 LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQ-DDQDSVRLLAVEGCAALGKL-LEPQD  171 (521)
Q Consensus        94 ~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~-d~~~~vr~~a~~~l~~l~~~-~~~~~  171 (521)
                      ..+.++..+.+.++|.+..||..|++.++.+....+.+ ..++.+.....+.+ -+++..-..|+-+++.++.. +-...
T Consensus       338 ivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~-Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps  416 (1133)
T KOG1943|consen  338 IVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPE-LADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPS  416 (1133)
T ss_pred             HHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHH-HHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchH
Confidence            45677888888899999999999999999999998843 33444444444333 33567788999999999865 32334


Q ss_pred             hhhhhHHHHHHhcC--------CCChHHHHHHHHHHHHHHHHhCCCcccc---chHH-HHHHhcCCChHHHHHHHHHhHH
Q 009975          172 CVAHILPVIVNFSQ--------DKSWRVRYMVANQLYELCEAVGPEPTRM---DLVP-AYVRLLRDNEAEVRIAAAGKVT  239 (521)
Q Consensus       172 ~~~~l~~~l~~~~~--------d~~~~vR~~~~~~l~~i~~~~~~~~~~~---~l~~-~l~~~l~d~~~~vr~~a~~~l~  239 (521)
                      ...+++|++.+.+.        .....||.+++-.+-.+++...+....+   .+.+ .+...+-|++-++|.+|..++.
T Consensus       417 ~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlq  496 (1133)
T KOG1943|consen  417 LLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAALQ  496 (1133)
T ss_pred             HHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHH
Confidence            56788999887664        2345799999999999988776554332   1222 2334567999999999998886


Q ss_pred             HHHhhhCH------------------------------HHHHHhhhHHHHHhccC----CcHHHHHHHHHHHHccccccC
Q 009975          240 KFCRILNP------------------------------ELAIQHILPCVKELSSD----SSQHVRSALASVIMGMAPLLG  285 (521)
Q Consensus       240 ~l~~~~~~------------------------------~~~~~~~~~~l~~~~~d----~~~~vr~~~~~~l~~i~~~~~  285 (521)
                      +.....+.                              +.+....-|.+..+...    =+..+|..++.++.++...-+
T Consensus       497 E~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~p  576 (1133)
T KOG1943|consen  497 ENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTEP  576 (1133)
T ss_pred             HHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhH
Confidence            54332111                              01111223333333333    234689999999999775554


Q ss_pred             hHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhh---c-------hhhH--hhhHHHHHHHHhcCC--ChHHHHHH
Q 009975          286 KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI---G-------IDLL--SQSLLPAIVELAEDR--HWRVRLAI  351 (521)
Q Consensus       286 ~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~---~-------~~~~--~~~~~~~l~~~~~~~--~~~vr~~~  351 (521)
                      +.. ....+|.++...-..+...|.++..+.+.+...+   +       ...+  ...++|.+....-.+  ....|.+.
T Consensus       577 k~~-a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~~ii~~~~~~~~~rg~~~lmr~~~  655 (1133)
T KOG1943|consen  577 KYL-ADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGLLSIIPPICDRYFYRGQGTLMRQAT  655 (1133)
T ss_pred             Hhh-cccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhhhhhccHHHHHHhccchHHHHHHHH
Confidence            433 4456777777777778888888887777765432   1       0000  011233332211111  13445555


Q ss_pred             HHHhHHHHhhh---ChhhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHh--CHHHHHhhhHHHHHhhhc-CcchHH
Q 009975          352 IEYIPLLASQL---GVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEF--GPEWAMQHITPQVLEMIN-NPHYLY  425 (521)
Q Consensus       352 ~~~l~~l~~~~---~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~--~~~~~~~~l~~~l~~~l~-~~~~~~  425 (521)
                      +..+..+...-   -.+.+.+...-++.+.+.+++ .+|.+|..+++.++..+  +.+.....++......+. +.+.+.
T Consensus       656 ~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s~y~~~d~~~~~~li~~~ls~~~~~~~~~~  734 (1133)
T KOG1943|consen  656 LKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVSTYVKADEGEEAPLITRYLSRLTKCSEERI  734 (1133)
T ss_pred             HHHHHHhhhccchhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHhcCchHHHH
Confidence            54444443221   123444555566667777777 89999999999998765  222222335444444444 447888


Q ss_pred             HHHHHHHHHHhhcccChHHHhhcHHHHHHhhc-CCCCchHHHHHHHHHHHHHhhhc-------hHHHHhhHHHHHHHhcC
Q 009975          426 RMTILRAISLLAPVMGSEITCSRLLPVVINAS-KDRVPNIKFNVAKVLQSLIPIVD-------QSMVEKTIRPCLVELTE  497 (521)
Q Consensus       426 r~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l-~d~~~~VR~~a~~~l~~~~~~~~-------~~~~~~~~~~~l~~l~~  497 (521)
                      |.....+++.+-..+-.-...+.+...++... .|..+.-|...+.++..++...+       .+.+.+.++.++.+...
T Consensus       735 r~g~~lal~~lp~~~i~~~~q~~lc~~~l~~~p~d~~a~aR~~~V~al~~v~~~~~~~~~~~~~~k~~e~LL~~lddYtt  814 (1133)
T KOG1943|consen  735 RRGLILALGVLPSELIHRHLQEKLCKLVLELLPSDAWAEARQQNVKALAHVCKTVTSLLFSESIEKFRETLLNALDDYTT  814 (1133)
T ss_pred             HHHHHHHHccCcHHhhchHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhccc
Confidence            88888777776532211222334444444433 33367789999999999888766       13455778888888888


Q ss_pred             CCCccH----HHHHHHHHHHHHHhhc
Q 009975          498 DPDVDV----RFFATQAIQSIDHVMM  519 (521)
Q Consensus       498 D~~~~v----r~~a~~al~~l~~~~~  519 (521)
                      |...||    |..|.+++.++...+.
T Consensus       815 d~rGDVGswVReaAm~al~~~~~~l~  840 (1133)
T KOG1943|consen  815 DSRGDVGSWVREAAMKALSSLLDTLS  840 (1133)
T ss_pred             ccCccHHHHHHHHHHHHHHhhhhhhc
Confidence            877774    6777777777766554

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.58  E-value=8.5e-13  Score=115.26  Aligned_cols=382  Identities=17%  Similarity=0.172  Sum_probs=235.7

Q ss_pred             HHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCchhh---HHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcChhh-
Q 009975           96 TELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHL---KTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQD-  171 (521)
Q Consensus        96 ~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~---~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~-  171 (521)
                      .+....++.++++.++.++.++..++|+++-..+....   ...+-+++.+++.|. -.+|+.++.++..++.+-.... 
T Consensus        84 res~epvl~llqs~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd~-vevqcnaVgCitnLaT~d~nk~k  162 (550)
T KOG4224|consen   84 RESNEPVLALLQSCDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTDG-VEVQCNAVGCITNLATFDSNKVK  162 (550)
T ss_pred             hhhhhHHHHHHhCcchhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCCC-cEEEeeehhhhhhhhccccchhh
Confidence            44555666777888999999999999999877665332   233445666666654 4568888999999888722211 


Q ss_pred             --hhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCC--CccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCH
Q 009975          172 --CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP--EPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP  247 (521)
Q Consensus       172 --~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~  247 (521)
                        ....+.|+ .++.+.++..+|..+..++..+......  ......-+|+++.+++..+..||..+..+++.++-.-..
T Consensus       163 iA~sGaL~pl-trLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~  241 (550)
T KOG4224|consen  163 IARSGALEPL-TRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRA  241 (550)
T ss_pred             hhhccchhhh-HhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHH
Confidence              11124444 4488888889999998888877654432  233356678999999988899999998888887653211


Q ss_pred             H----HHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccChHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhh
Q 009975          248 E----LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI  323 (521)
Q Consensus       248 ~----~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~  323 (521)
                      .    ..-++++|.+.++..|.+++++..+.-+++.++..-..                                     
T Consensus       242 Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Y-------------------------------------  284 (550)
T KOG4224|consen  242 RKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEY-------------------------------------  284 (550)
T ss_pred             HHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchh-------------------------------------
Confidence            1    11123555666666666666666555555555421110                                     


Q ss_pred             chhhHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChhh--hHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHHHHH
Q 009975          324 GIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLQD-KVYSIRDAAANNLKRLAEE  400 (521)
Q Consensus       324 ~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~  400 (521)
                      ..+.....-+|.+.++++++.-..-.+-+.++..++-+-+.+.  ....++..+..++.- ++.+++-.|...+-.++..
T Consensus       285 q~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAas  364 (550)
T KOG4224|consen  285 QREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAAS  364 (550)
T ss_pred             hhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhh
Confidence            0111112335555555555443333333334433333322221  112233334444443 4555788888888777653


Q ss_pred             hCH---HHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhh--cccChHHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHH
Q 009975          401 FGP---EWAMQHITPQVLEMINNPHYLYRMTILRAISLLA--PVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSL  475 (521)
Q Consensus       401 ~~~---~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~--~~~~~~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~  475 (521)
                      ...   .++....+|.+.+++.|..-.+|...-.++..++  +..........++|.++.+..+.+.+||-+++.+|..+
T Consensus       365 se~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nl  444 (550)
T KOG4224|consen  365 SEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALNDNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINL  444 (550)
T ss_pred             hhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhccccHHHHhhcCCcceeecccCccchhhcccHHHHHHhh
Confidence            322   2334567889999888887666665555555544  33333333456889999999999999999999999998


Q ss_pred             HhhhchH-----HH---HhhHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 009975          476 IPIVDQS-----MV---EKTIRPCLVELTEDPDVDVRFFATQAIQSIDH  516 (521)
Q Consensus       476 ~~~~~~~-----~~---~~~~~~~l~~l~~D~~~~vr~~a~~al~~l~~  516 (521)
                      +.....-     .+   .+-+...|.++....+.-+|..+.|++..+.+
T Consensus       445 ss~v~~YarviEawd~P~~gi~g~L~Rfl~S~~~tf~hia~wTI~qLle  493 (550)
T KOG4224|consen  445 SSDVEHYARVIEAWDHPVQGIQGRLARFLASHELTFRHIARWTIQQLLE  493 (550)
T ss_pred             hhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence            7654320     00   14455666777777788888899998887754

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.57  E-value=5.2e-11  Score=116.74  Aligned_cols=376  Identities=17%  Similarity=0.178  Sum_probs=256.9

Q ss_pred             HHHhhcCCChhHHHHHHHHHHHHhhhcChhhhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCC---CccccchHH
Q 009975          141 FEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRMDLVP  217 (521)
Q Consensus       141 l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~---~~~~~~l~~  217 (521)
                      +...+++.+...-..++.+|..+.+........+.+.+.+...+.++++.||..++..+++++..-..   -.....+++
T Consensus        43 lf~~L~~~~~e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~  122 (503)
T PF10508_consen   43 LFDCLNTSNREQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLP  122 (503)
T ss_pred             HHHHHhhcChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHH
Confidence            44555555555557888899999888777767788999999999999999999999998887653221   123468999


Q ss_pred             HHHHhcCCChHHHHHHHHHhHHHHHhhhCHH-H-HHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccChH---HHHHh
Q 009975          218 AYVRLLRDNEAEVRIAAAGKVTKFCRILNPE-L-AIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD---ATIEQ  292 (521)
Q Consensus       218 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~-~-~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~---~~~~~  292 (521)
                      .+..++.|++.+|...|+.+|..++..-..- . +.+...+.+..++..++..+|..+.+.+..++..-...   .....
T Consensus       123 ~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sg  202 (503)
T PF10508_consen  123 LIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSG  202 (503)
T ss_pred             HHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhcc
Confidence            9999999999999999999999998753221 1 12334777888887778888888888888886544331   12235


Q ss_pred             HHHHHHHhhcCCChHHHHHHHHHHHHhhhhh-chhh-HhhhHHHHHHHHhcCC--Ch---HHH-HHHHHHhHHHHhhhCh
Q 009975          293 LLPIFLSLLKDEFPDVRLNIISKLDQVNQVI-GIDL-LSQSLLPAIVELAEDR--HW---RVR-LAIIEYIPLLASQLGV  364 (521)
Q Consensus       293 l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~-~~~~-~~~~~~~~l~~~~~~~--~~---~vr-~~~~~~l~~l~~~~~~  364 (521)
                      +++.+...++++|.-++.++++.+..++..- |.+. ....+++.+.+.+.+.  ++   .+. ...++.++.++..-+.
T Consensus       203 ll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~  282 (503)
T PF10508_consen  203 LLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQ  282 (503)
T ss_pred             HHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChH
Confidence            8899999999999999999999999998732 2221 2245677777665332  22   111 2233555555554222


Q ss_pred             hhh--HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHh-CHHHH-------HhhhHHHHHhhhcCcchHHHHHHHHHHH
Q 009975          365 GFF--DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEF-GPEWA-------MQHITPQVLEMINNPHYLYRMTILRAIS  434 (521)
Q Consensus       365 ~~~--~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~-~~~~~-------~~~l~~~l~~~l~~~~~~~r~~a~~~l~  434 (521)
                      ...  .+.++..+...+...+...+..|+.++|.++... |....       .+.++..+.....+....+|.+++.+++
T Consensus       283 ~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~  362 (503)
T PF10508_consen  283 EVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALA  362 (503)
T ss_pred             HHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence            211  2456666677788899999999999999997544 22222       1234444555556667789999999999


Q ss_pred             HhhcccCh-----------HHHh---hcHHH-HHHhhcCCCCchHHHHHHHHHHHHHhhh-chHHHH--hhHHHHHHHhc
Q 009975          435 LLAPVMGS-----------EITC---SRLLP-VVINASKDRVPNIKFNVAKVLQSLIPIV-DQSMVE--KTIRPCLVELT  496 (521)
Q Consensus       435 ~l~~~~~~-----------~~~~---~~il~-~l~~~l~d~~~~VR~~a~~~l~~~~~~~-~~~~~~--~~~~~~l~~l~  496 (521)
                      .+......           .+|.   +.-.. .+...++.|-+++|.++...+..++.+- |...+.  +.++..+..-.
T Consensus       363 ~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg~~~i~~~~gfie~lldr~  442 (503)
T PF10508_consen  363 SILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQPWGQREICSSPGFIEYLLDRS  442 (503)
T ss_pred             HHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCHHHHHHHHhCccHHhhhcCCC
Confidence            99653322           1111   11222 7888899999999999999999998653 111111  34455555555


Q ss_pred             CCCCccHHHHHHHHHHHHHH
Q 009975          497 EDPDVDVRFFATQAIQSIDH  516 (521)
Q Consensus       497 ~D~~~~vr~~a~~al~~l~~  516 (521)
                      .+++++.+.+=...++.|.+
T Consensus       443 ~E~~K~~ke~K~~ii~~l~~  462 (503)
T PF10508_consen  443 TETTKEGKEAKYDIIKALAK  462 (503)
T ss_pred             CCCCHHHHHHHHHHHHHHHh
Confidence            66777777777777776664

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.56  E-value=3.6e-11  Score=115.29  Aligned_cols=455  Identities=17%  Similarity=0.157  Sum_probs=294.5

Q ss_pred             HhhhhcCchhHHHHHHH-HHHHHHHhhcChhHHHHhHHHHHHHhhcCCCCcchhhhhhhhhhhcCCCChHHHHHHHHHHH
Q 009975           25 LETLCTVEETCVRDKAV-ESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYT  103 (521)
Q Consensus        25 l~~l~~~~~~~vR~~a~-~~l~~i~~~~~~~~~~~~l~p~i~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~~l~  103 (521)
                      |.+++++........|+ +.++.+++.-+    .+.+-|.+.+.+..++.++|.....-+...++.-++- --.=+..++
T Consensus        40 L~~lLdSnkd~~KleAmKRIia~iA~G~d----vS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdL-ALLSIntfQ  114 (968)
T KOG1060|consen   40 LKQLLDSNKDSLKLEAMKRIIALIAKGKD----VSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDL-ALLSINTFQ  114 (968)
T ss_pred             HHHHHhccccHHHHHHHHHHHHHHhcCCc----HHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCc-eeeeHHHHH
Confidence            45555544444444455 44555555443    2455555555555556666654443333444443332 111256888


Q ss_pred             HhcCCCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcChhhhhhhhHHHHHHh
Q 009975          104 QLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNF  183 (521)
Q Consensus       104 ~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~  183 (521)
                      +.++|+++.+|-.|...|..+--    ..+.+.++-.+.+...|..+.||..|+.++..+...-+.  ...++...+..+
T Consensus       115 k~L~DpN~LiRasALRvlSsIRv----p~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e--~k~qL~e~I~~L  188 (968)
T KOG1060|consen  115 KALKDPNQLIRASALRVLSSIRV----PMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPE--QKDQLEEVIKKL  188 (968)
T ss_pred             hhhcCCcHHHHHHHHHHHHhcch----hhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChh--hHHHHHHHHHHH
Confidence            99999999999999988877532    345677777888899999999999999999988765332  345899999999


Q ss_pred             cCCCChHHHHHHHHHHHHHHHHhCCCccccchHHH---HHHhcCCChHHHHHHHHHhHHHHHhhh--CH-----------
Q 009975          184 SQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPA---YVRLLRDNEAEVRIAAAGKVTKFCRIL--NP-----------  247 (521)
Q Consensus       184 ~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~---l~~~l~d~~~~vr~~a~~~l~~l~~~~--~~-----------  247 (521)
                      +.|.++.|--+++.++..++..-     .+-+-+.   +-+++.|-+..=+...++.|...+.+.  .+           
T Consensus       189 LaD~splVvgsAv~AF~evCPer-----ldLIHknyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~  263 (968)
T KOG1060|consen  189 LADRSPLVVGSAVMAFEEVCPER-----LDLIHKNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNG  263 (968)
T ss_pred             hcCCCCcchhHHHHHHHHhchhH-----HHHhhHHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCccccccccccCc
Confidence            99999999999999988776421     1122222   334555666555666777777666542  11           


Q ss_pred             ------------------HHHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccChHHHHHhHHHHHHHhhcCCChHHH
Q 009975          248 ------------------ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVR  309 (521)
Q Consensus       248 ------------------~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr  309 (521)
                                        +.-...++...+.++...++.|-.++++.+..+++.-    -...+...++.++... .+++
T Consensus       264 ~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~----~~~~i~kaLvrLLrs~-~~vq  338 (968)
T KOG1060|consen  264 RSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKN----QVTKIAKALVRLLRSN-REVQ  338 (968)
T ss_pred             ccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHH----HHHHHHHHHHHHHhcC-Ccch
Confidence                              0111224455566677888889889988888887533    2345566667766644 5677


Q ss_pred             HHHHHHHHHhhhhhc--------------------------------hhhHhhhHHHHHHHHhcCCChHHHHHHHHHhHH
Q 009975          310 LNIISKLDQVNQVIG--------------------------------IDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPL  357 (521)
Q Consensus       310 ~~a~~~l~~~~~~~~--------------------------------~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~  357 (521)
                      ...+.++..+...-.                                .+.-...+++.|..++.+.+.++-..++++++.
T Consensus       339 yvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~ILrE~q~YI~s~d~~faa~aV~AiGr  418 (968)
T KOG1060|consen  339 YVVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQVKILKLEILSNLANESNISEILRELQTYIKSSDRSFAAAAVKAIGR  418 (968)
T ss_pred             hhhHHHHHHHHhcchhhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence            666666666543210                                011124667777778888777888888888888


Q ss_pred             HHhhhChhhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCc-chHHHHHHHHHHHHh
Q 009975          358 LASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNP-HYLYRMTILRAISLL  436 (521)
Q Consensus       358 l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~-~~~~r~~a~~~l~~l  436 (521)
                      .+...+.  ..+..+.-++.+++..+.-|-..+...+..+.+.-...  ...++..|...+..- -+.-|.+.+|.+|..
T Consensus       419 CA~~~~s--v~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~~--h~~ii~~La~lldti~vp~ARA~IiWLige~  494 (968)
T KOG1060|consen  419 CASRIGS--VTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPAE--HLEILFQLARLLDTILVPAARAGIIWLIGEY  494 (968)
T ss_pred             HHHhhCc--hhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhChHH--HHHHHHHHHHHhhhhhhhhhhceeeeeehhh
Confidence            8877664  24556677778888888888888888888887654322  223555666665332 356788888888887


Q ss_pred             hcccChHHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchHHHHhhHHHHHHHh-cCCCCccHHHHHH
Q 009975          437 APVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVEL-TEDPDVDVRFFAT  508 (521)
Q Consensus       437 ~~~~~~~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~~~~~~~~l~~l-~~D~~~~vr~~a~  508 (521)
                      +....  .+.+.++..+.+-+.|+.+.||...++.-..+...-.. .+ +.+.-.+..+ --|...++|..+.
T Consensus       495 ~e~vp--ri~PDVLR~laksFs~E~~evKlQILnL~aKLyl~~~~-~~-kll~~Yv~~L~~yD~sYDiRDRaR  563 (968)
T KOG1060|consen  495 CEIVP--RIAPDVLRKLAKSFSDEGDEVKLQILNLSAKLYLTNID-QT-KLLVQYVFELARYDLSYDIRDRAR  563 (968)
T ss_pred             hhhcc--hhchHHHHHHHHhhccccchhhHHHHHhhhhheEechh-hH-HHHHHHHHHHhccCCCcchhHHHH
Confidence            76422  24567777888889999999999998888776543221 12 2222222333 3588888887653

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.54  E-value=2.3e-10  Score=112.26  Aligned_cols=391  Identities=15%  Similarity=0.167  Sum_probs=246.7

Q ss_pred             HHHHHhhcCCCCcchhhhhhhhhhhcCCCChH-HHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCc---hhhHHHH
Q 009975           62 PLVKRLAAGEWFTARVSACGLFHIAYPSAPDI-LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP---AHLKTDI  137 (521)
Q Consensus        62 p~i~~~~~~~~~~~r~~~~~~~~~~~~~~~~~-~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l  137 (521)
                      +.+....++.+.+.-..++..+..+.....+. ....+.+.+...+.++++.||..++..++.++.....   -.....+
T Consensus        41 ~~lf~~L~~~~~e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l  120 (503)
T PF10508_consen   41 PVLFDCLNTSNREQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNEL  120 (503)
T ss_pred             HHHHHHHhhcChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccH
Confidence            33444444443333345566666666555444 5788889999999999999999999999988754332   1244678


Q ss_pred             HHHHHHhhcCCChhHHHHHHHHHHHHhhhcChh--hhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCC---Cccc
Q 009975          138 MSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ--DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTR  212 (521)
Q Consensus       138 ~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~---~~~~  212 (521)
                      ++.+..++.+++..|...|+.++..+++.-..-  .....+.+.+..+....+..+|..+.+.+..++..-..   ....
T Consensus       121 ~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~  200 (503)
T PF10508_consen  121 LPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVN  200 (503)
T ss_pred             HHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHh
Confidence            999999999999999999999999999763221  11233477778888777888999999988888753221   1123


Q ss_pred             cchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHH--HhhhHHHHHhc----cCC-cHHH-HHHHHHHHHcccccc
Q 009975          213 MDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAI--QHILPCVKELS----SDS-SQHV-RSALASVIMGMAPLL  284 (521)
Q Consensus       213 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~--~~~~~~l~~~~----~d~-~~~v-r~~~~~~l~~i~~~~  284 (521)
                      ..+++.+.+.++++|.-+|..+++.+..++..-....+.  ..+++.+..++    .|+ ...+ --..+..++.++..-
T Consensus       201 sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~  280 (503)
T PF10508_consen  201 SGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVS  280 (503)
T ss_pred             ccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcC
Confidence            568999999999999999999999999998843222221  22455555554    334 1111 123335555555542


Q ss_pred             ChHH--HHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhh-chhhH-------hhhHHHHHHHHhcCCChHHHHHHHHH
Q 009975          285 GKDA--TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI-GIDLL-------SQSLLPAIVELAEDRHWRVRLAIIEY  354 (521)
Q Consensus       285 ~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~-~~~~~-------~~~~~~~l~~~~~~~~~~vr~~~~~~  354 (521)
                      +...  ....++..+..++.+.++..+..|..+++.++... |...+       ...++..+..........+|..++.+
T Consensus       281 ~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~a  360 (503)
T PF10508_consen  281 PQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHA  360 (503)
T ss_pred             hHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence            2222  12455666677788899999999999999987643 22222       12233334444455566778888887


Q ss_pred             hHHHHhhhChhhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHH
Q 009975          355 IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAIS  434 (521)
Q Consensus       355 l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~  434 (521)
                      +..+........ .+.+.                   .....+...++......    .+..+++.|-+.+|.++...+.
T Consensus       361 l~~il~~~~~~~-~~~i~-------------------~~~~~w~~~~~~~~~~~----~l~~~~~qPF~elr~a~~~~l~  416 (503)
T PF10508_consen  361 LASILTSGTDRQ-DNDIL-------------------SITESWYESLSGSPLSN----LLMSLLKQPFPELRCAAYRLLQ  416 (503)
T ss_pred             HHHHHhcCCCCc-hHHHH-------------------HHHHHHHHHhcCCchHH----HHHHHhcCCchHHHHHHHHHHH
Confidence            777764332211 11111                   22333444444322211    5666777777888888888888


Q ss_pred             Hhhcc-cChHHH--hhcHHHHHHhhcCCCCchHHHHHHHHHHHHH
Q 009975          435 LLAPV-MGSEIT--CSRLLPVVINASKDRVPNIKFNVAKVLQSLI  476 (521)
Q Consensus       435 ~l~~~-~~~~~~--~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~  476 (521)
                      .++.+ .|...+  .+.++.+++.--.+++...+..=..++..+.
T Consensus       417 ~l~~~~Wg~~~i~~~~gfie~lldr~~E~~K~~ke~K~~ii~~l~  461 (503)
T PF10508_consen  417 ALAAQPWGQREICSSPGFIEYLLDRSTETTKEGKEAKYDIIKALA  461 (503)
T ss_pred             HHhcCHHHHHHHHhCccHHhhhcCCCCCCCHHHHHHHHHHHHHHH
Confidence            88763 222222  2456667766666666666665555555555

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.47  E-value=3.5e-10  Score=108.71  Aligned_cols=384  Identities=16%  Similarity=0.146  Sum_probs=233.4

Q ss_pred             HhhcCCCCcchhhhh-hhhhhhcCCCChHHHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHh
Q 009975           66 RLAAGEWFTARVSAC-GLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDL  144 (521)
Q Consensus        66 ~~~~~~~~~~r~~~~-~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l  144 (521)
                      ++.+++....+..|+ .+++.++.+ .+  ...++|...+....++.+||+-+--.|-..++.-+....  -=+..+++-
T Consensus        42 ~lLdSnkd~~KleAmKRIia~iA~G-~d--vS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLAL--LSIntfQk~  116 (968)
T KOG1060|consen   42 QLLDSNKDSLKLEAMKRIIALIAKG-KD--VSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLAL--LSINTFQKA  116 (968)
T ss_pred             HHHhccccHHHHHHHHHHHHHHhcC-Cc--HHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCcee--eeHHHHHhh
Confidence            444555545555565 444555543 33  678999988888889999999988888777765432211  114567788


Q ss_pred             hcCCChhHHHHHHHHHHHHhhhcChhhhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcC
Q 009975          145 TQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLR  224 (521)
Q Consensus       145 ~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~  224 (521)
                      +.|+|+-+|..|++++..+--.    ...+-++-.+.++..|+++.||+.++.++.++-+ ++++.. +.+..++..++.
T Consensus       117 L~DpN~LiRasALRvlSsIRvp----~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYs-Ld~e~k-~qL~e~I~~LLa  190 (968)
T KOG1060|consen  117 LKDPNQLIRASALRVLSSIRVP----MIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYS-LDPEQK-DQLEEVIKKLLA  190 (968)
T ss_pred             hcCCcHHHHHHHHHHHHhcchh----hHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhc-CChhhH-HHHHHHHHHHhc
Confidence            8999999999999998765322    1233444556678899999999999999987754 444443 489999999999


Q ss_pred             CChHHHHHHHHHhHHHHHhhhCHHHHHHhhhHHHHHhccCCcHHHHHHHHHHHHcccccc--------------------
Q 009975          225 DNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLL--------------------  284 (521)
Q Consensus       225 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~--------------------  284 (521)
                      |.++-|--+|+.++..++-.-  -.....-.--+.+++.|-+.+=+..++..+.+.++.-                    
T Consensus       191 D~splVvgsAv~AF~evCPer--ldLIHknyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~  268 (968)
T KOG1060|consen  191 DRSPLVVGSAVMAFEEVCPER--LDLIHKNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNL  268 (968)
T ss_pred             CCCCcchhHHHHHHHHhchhH--HHHhhHHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccc
Confidence            999999999998887765421  0111111222334444433333333333333332210                    


Q ss_pred             --------Ch---HHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHhcCCChHHHHHHHH
Q 009975          285 --------GK---DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIE  353 (521)
Q Consensus       285 --------~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~  353 (521)
                              ++   +.....++...-.++.+.++.|-.++++.+-.++.....    ..+...+..++.. +..++...+.
T Consensus       269 ~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~~~----~~i~kaLvrLLrs-~~~vqyvvL~  343 (968)
T KOG1060|consen  269 KDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKNQV----TKIAKALVRLLRS-NREVQYVVLQ  343 (968)
T ss_pred             cccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHHHH----HHHHHHHHHHHhc-CCcchhhhHH
Confidence                    00   111234556666778899999999999988888765422    3445555555433 4567777777


Q ss_pred             HhHHHHhhhChhhhHHHHHHHHHHHc-CCC-cHHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCcchHHHHHHHH
Q 009975          354 YIPLLASQLGVGFFDDKLGALCMQWL-QDK-VYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILR  431 (521)
Q Consensus       354 ~l~~l~~~~~~~~~~~~l~~~l~~~l-~d~-~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~  431 (521)
                      .+..++..-+ ..    +.|.+.++. ... ...++.-=++.|..++..-.    ...+++.+..+.++++.++-.+++.
T Consensus       344 nIa~~s~~~~-~l----F~P~lKsFfv~ssDp~~vk~lKleiLs~La~esn----i~~ILrE~q~YI~s~d~~faa~aV~  414 (968)
T KOG1060|consen  344 NIATISIKRP-TL----FEPHLKSFFVRSSDPTQVKILKLEILSNLANESN----ISEILRELQTYIKSSDRSFAAAAVK  414 (968)
T ss_pred             HHHHHHhcch-hh----hhhhhhceEeecCCHHHHHHHHHHHHHHHhhhcc----HHHHHHHHHHHHhcCchhHHHHHHH
Confidence            7777765422 22    223332221 111 12233333444444443222    3456666666666666667777777


Q ss_pred             HHHHhhcccChHHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhh
Q 009975          432 AISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPI  478 (521)
Q Consensus       432 ~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~  478 (521)
                      ++|.++...+.  +.+..+.-++.+++..+..|-..++..+..+.+.
T Consensus       415 AiGrCA~~~~s--v~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~  459 (968)
T KOG1060|consen  415 AIGRCASRIGS--VTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQK  459 (968)
T ss_pred             HHHHHHHhhCc--hhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhh
Confidence            77777764442  3456666677777666666666666666666554

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]

Probab=99.47  E-value=3.2e-09  Score=105.92  Aligned_cols=461  Identities=15%  Similarity=0.103  Sum_probs=279.3

Q ss_pred             hhHHhhhhHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHHHhHHHHHHHhhcCCCCcchhhhhhhhhhhcCC--CChH
Q 009975           16 EHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPS--APDI   93 (521)
Q Consensus        16 ~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~p~i~~~~~~~~~~~r~~~~~~~~~~~~~--~~~~   93 (521)
                      ++++-++..|...++|.|..||-.|++.++.+...++.+-..+.+-..+.-+..-+....=..+|..++.++..  +.+.
T Consensus       337 eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps  416 (1133)
T KOG1943|consen  337 EIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPS  416 (1133)
T ss_pred             HHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchH
Confidence            45666777777888899999999999999999999996654333333332121122222233566666555432  3455


Q ss_pred             HHHHHHHHHHHhcC--------CCChHHHHHHHHhHHHHHHhhCchhhHH----HHHHHHHHhhcCCChhHHHHHHHHHH
Q 009975           94 LKTELRSIYTQLCQ--------DDMPMVRRSAASNLGKFAATVEPAHLKT----DIMSIFEDLTQDDQDSVRLLAVEGCA  161 (521)
Q Consensus        94 ~~~~l~~~l~~l~~--------~~~~~vr~~a~~~l~~l~~~~~~~~~~~----~l~~~l~~l~~d~~~~vr~~a~~~l~  161 (521)
                      ....+.|++...+.        .....||.+|+..+=.+.+...+....+    ....++...+-|.+-++|.+|..++.
T Consensus       417 ~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlq  496 (1133)
T KOG1943|consen  417 LLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAALQ  496 (1133)
T ss_pred             HHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHH
Confidence            57778887776542        2356899999999999998877654444    23334455667888999999988887


Q ss_pred             HHhhhcCh--------------------h----------hhhhhhHHHHHH----hcCCCChHHHHHHHHHHHHHHHHhC
Q 009975          162 ALGKLLEP--------------------Q----------DCVAHILPVIVN----FSQDKSWRVRYMVANQLYELCEAVG  207 (521)
Q Consensus       162 ~l~~~~~~--------------------~----------~~~~~l~~~l~~----~~~d~~~~vR~~~~~~l~~i~~~~~  207 (521)
                      +.....+.                    +          ....+.-|++..    -..+.+..+|..++.++.++....+
T Consensus       497 E~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~p  576 (1133)
T KOG1943|consen  497 ENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTEP  576 (1133)
T ss_pred             HHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhH
Confidence            76554221                    0          011112233332    3556788999999999999776544


Q ss_pred             CCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCH----------HHH--HHhhhHHHHHhccCCc--HHHHHHH
Q 009975          208 PEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP----------ELA--IQHILPCVKELSSDSS--QHVRSAL  273 (521)
Q Consensus       208 ~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~----------~~~--~~~~~~~l~~~~~d~~--~~vr~~~  273 (521)
                      +.. ....+|.+.......+...|..+..+.+.+....-.          ..+  ...++|.+...--++.  ...|.+.
T Consensus       577 k~~-a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~~ii~~~~~~~~~rg~~~lmr~~~  655 (1133)
T KOG1943|consen  577 KYL-ADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGLLSIIPPICDRYFYRGQGTLMRQAT  655 (1133)
T ss_pred             Hhh-cccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhhhhhccHHHHHHhccchHHHHHHHH
Confidence            333 345666666666666778888877777766554311          000  1112222222111121  3456666


Q ss_pred             HHHHHccccccC---hHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhch--hhHhhhHHHHH-HHHhcCCChHH
Q 009975          274 ASVIMGMAPLLG---KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI--DLLSQSLLPAI-VELAEDRHWRV  347 (521)
Q Consensus       274 ~~~l~~i~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~--~~~~~~~~~~l-~~~~~~~~~~v  347 (521)
                      ...+..+...-.   .+...+.+.-.+.+.+.+++ .+|..|..+++.++...-.  +.....++... ..+.+..+.++
T Consensus       656 ~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s~y~~~d~~~~~~li~~~ls~~~~~~~~~~  734 (1133)
T KOG1943|consen  656 LKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVSTYVKADEGEEAPLITRYLSRLTKCSEERI  734 (1133)
T ss_pred             HHHHHHhhhccchhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHhcCchHHHH
Confidence            666666543322   23334445556666666666 8999999999998765421  11112233333 33334446778


Q ss_pred             HHHHHHHhHHHHhhhChhhhHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHHHHhCH-------HHHHhhhHHHHHhhhc
Q 009975          348 RLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQ-DKVYSIRDAAANNLKRLAEEFGP-------EWAMQHITPQVLEMIN  419 (521)
Q Consensus       348 r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~-------~~~~~~l~~~l~~~l~  419 (521)
                      |....-+++.+....=.-...+.+...++.... |..+.-|+..+.++..++...+.       +.+.+.++..+.++..
T Consensus       735 r~g~~lal~~lp~~~i~~~~q~~lc~~~l~~~p~d~~a~aR~~~V~al~~v~~~~~~~~~~~~~~k~~e~LL~~lddYtt  814 (1133)
T KOG1943|consen  735 RRGLILALGVLPSELIHRHLQEKLCKLVLELLPSDAWAEARQQNVKALAHVCKTVTSLLFSESIEKFRETLLNALDDYTT  814 (1133)
T ss_pred             HHHHHHHHccCcHHhhchHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhccc
Confidence            877666665554332222334455555554433 44778899999999998887762       2234556666666655


Q ss_pred             Ccc----hHHHHHHHHHHHHhhcccC-hHHHh----hcHHHHHHhhcCCCCchHHHHHHHHHHHHHhh
Q 009975          420 NPH----YLYRMTILRAISLLAPVMG-SEITC----SRLLPVVINASKDRVPNIKFNVAKVLQSLIPI  478 (521)
Q Consensus       420 ~~~----~~~r~~a~~~l~~l~~~~~-~~~~~----~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~  478 (521)
                      |.+    ..+|++|+.++..+...+. ++.+.    ..++-.+++--.++....|.-|+.++..+..+
T Consensus       815 d~rGDVGswVReaAm~al~~~~~~l~~p~~ld~~~i~~~~~~~vqQ~veKIdrlre~a~~~~~qi~~~  882 (1133)
T KOG1943|consen  815 DSRGDVGSWVREAAMKALSSLLDTLSSPKLLDEDSINRIIRYFVQQAVEKIDRLRELAASALNQIVVH  882 (1133)
T ss_pred             ccCccHHHHHHHHHHHHHHhhhhhhcCcccccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhceeec
Confidence            543    6799999999999887655 23222    33344444445566666788888888877654

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=99.47  E-value=7.8e-10  Score=102.70  Aligned_cols=472  Identities=12%  Similarity=0.060  Sum_probs=264.4

Q ss_pred             hhhHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHHHhHHHHHHHhhcCCCCcchhhhhhhhhhhcCCCChHHHHHHHH
Q 009975           21 LLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRS  100 (521)
Q Consensus        21 l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~p~i~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~  100 (521)
                      ++-.+.++..+.|+..|+..-.++.++...-.  ++.-..-..+...-..-...+|.-|++.+-.   -+++.+.-.+-.
T Consensus        66 lff~i~KlFQhkd~~Lrq~VY~aIkelS~~te--dvlm~tssiMkD~~~g~~~~~kp~AiRsL~~---Vid~~tv~~~er  140 (898)
T COG5240          66 LFFAILKLFQHKDLYLRQCVYSAIKELSKLTE--DVLMGTSSIMKDLNGGVPDDVKPMAIRSLFS---VIDGETVYDFER  140 (898)
T ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHHhhcch--hhhHHHHHHHHhhccCCccccccHHHHHHHH---hcCcchhhhHHH
Confidence            55556677788899999987777776665321  1110111111222222233455555543322   234444555556


Q ss_pred             HHHHhcCCCChHHHHHHHHhHHHHHHhhCc--hhhHHHHHHHHHHhhcC------------CChhHHHHHHHHHHHHhhh
Q 009975          101 IYTQLCQDDMPMVRRSAASNLGKFAATVEP--AHLKTDIMSIFEDLTQD------------DQDSVRLLAVEGCAALGKL  166 (521)
Q Consensus       101 ~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~l~~d------------~~~~vr~~a~~~l~~l~~~  166 (521)
                      ++.+..-++.+.+|.+|.-.-..+......  ....++.......+.+.            .++-...-|+..|..+-..
T Consensus       141 ~l~~a~Vs~~~a~~saalv~aYhLlp~~~~~~~rw~ne~qeav~~l~q~p~~~~n~gy~Pn~~~isqYHalGlLyq~kr~  220 (898)
T COG5240         141 YLNQAFVSTSMARRSAALVVAYHLLPNNFNQTKRWLNETQEAVLDLKQFPNQHGNEGYEPNGNPISQYHALGLLYQSKRT  220 (898)
T ss_pred             HhhhhccccchhhhhhHHHHhhhhccccHHHHHHHHHHHHHHHhhHhhCcCccCCcccCCCCChHHHHHHHHHHHHHhcc
Confidence            667777777788887776444333321100  00111111111112111            1111222233222222111


Q ss_pred             cChhhhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCC-ccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhh
Q 009975          167 LEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE-PTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRIL  245 (521)
Q Consensus       167 ~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~-~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~  245 (521)
                        +...   ...++..+..+.+-.-..+.+..+..+...+..+ .....+.|++-..++|.-..|...+++++..++..-
T Consensus       221 --dkma---~lklv~hf~~n~smknq~a~V~lvr~~~~ll~~n~q~~~q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~n  295 (898)
T COG5240         221 --DKMA---QLKLVEHFRGNASMKNQLAGVLLVRATVELLKENSQALLQLRPFLNSWLSDKFEMVFLEAARAVCALSEEN  295 (898)
T ss_pred             --cHHH---HHHHHHHhhcccccccchhheehHHHHHHHHHhChHHHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHhc
Confidence              0001   1122222222221111111111222222222221 123457777888888877788888888888876654


Q ss_pred             -CHHHHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccChHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhc
Q 009975          246 -NPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG  324 (521)
Q Consensus       246 -~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~  324 (521)
                       ++ ++....+..+..++..+....|-+|...+.+++...+...  ...-+-+..++.|.+..+-..|+.+|-+-    |
T Consensus       296 v~~-~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv--~vcN~evEsLIsd~Nr~IstyAITtLLKT----G  368 (898)
T COG5240         296 VGS-QFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKV--SVCNKEVESLISDENRTISTYAITTLLKT----G  368 (898)
T ss_pred             cCH-HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCcee--eecChhHHHHhhcccccchHHHHHHHHHc----C
Confidence             44 4456777888888888888889999999999886665432  22345566777887766655555444332    3


Q ss_pred             hhhHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChhhhHHHHHHHHHH-HcCCCcHHHHHHHHHHHHHHHHHhCH
Q 009975          325 IDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQ-WLQDKVYSIRDAAANNLKRLAEEFGP  403 (521)
Q Consensus       325 ~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~-~l~d~~~~vr~~a~~~l~~l~~~~~~  403 (521)
                      .+.-...++..+..+..|-+...+.-+++++..++-.++.+.  ..++..+.. +++....+-+..+..++..+.+....
T Consensus       369 t~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~--~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~  446 (898)
T COG5240         369 TEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKK--LSYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPD  446 (898)
T ss_pred             chhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHH--HHHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCch
Confidence            233335566666666677666667777777777777766542  223333333 33456777888888888887765432


Q ss_pred             HHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChHHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchHH
Q 009975          404 EWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSM  483 (521)
Q Consensus       404 ~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~  483 (521)
                        ..+..+..|..+..|..+.  +.+++.++-+.+..+...-...++.+++.-+-=++..||.+|..+|..++-......
T Consensus       447 --skEraLe~LC~fIEDcey~--~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~  522 (898)
T COG5240         447 --SKERALEVLCTFIEDCEYH--QITVRILGILGREGPRAKTPGKYVRHIYNRLILENNIVRSAAVQALSKFALNISDVV  522 (898)
T ss_pred             --HHHHHHHHHHHHHhhcchh--HHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCccccc
Confidence              3566777788888776543  455666666665433221122233333333333567899999999999887766666


Q ss_pred             HHhhHHHHHHHhcCCCCccHHHHHHHHHHHHH
Q 009975          484 VEKTIRPCLVELTEDPDVDVRFFATQAIQSID  515 (521)
Q Consensus       484 ~~~~~~~~l~~l~~D~~~~vr~~a~~al~~l~  515 (521)
                      ..+.+...|.++++|.|.+||..|.-++..+.
T Consensus       523 ~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~  554 (898)
T COG5240         523 SPQSVENALKRCLNDQDDEVRDRASFLLRNMR  554 (898)
T ss_pred             cHHHHHHHHHHHhhcccHHHHHHHHHHHHhhh
Confidence            66788889999999999999999998887664

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.46  E-value=2.1e-11  Score=106.69  Aligned_cols=371  Identities=16%  Similarity=0.149  Sum_probs=249.5

Q ss_pred             hhcCCCCcchhhhhhhhhhhcCCCChH----HHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCchh---hHHHHHH
Q 009975           67 LAAGEWFTARVSACGLFHIAYPSAPDI----LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAH---LKTDIMS  139 (521)
Q Consensus        67 ~~~~~~~~~r~~~~~~~~~~~~~~~~~----~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~---~~~~l~~  139 (521)
                      +.++....+..+++..++.++-+....    ...-+-+++.++..| ..+||..+..++..++..-....   ....+.|
T Consensus        93 llqs~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd-~vevqcnaVgCitnLaT~d~nk~kiA~sGaL~p  171 (550)
T KOG4224|consen   93 LLQSCDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTD-GVEVQCNAVGCITNLATFDSNKVKIARSGALEP  171 (550)
T ss_pred             HHhCcchhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCC-CcEEEeeehhhhhhhhccccchhhhhhccchhh
Confidence            334444455566665555444332211    122244566676655 46889899999988886522211   1223444


Q ss_pred             HHHHhhcCCChhHHHHHHHHHHHHhhhcChh--hhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCC----Ccccc
Q 009975          140 IFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ--DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP----EPTRM  213 (521)
Q Consensus       140 ~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~----~~~~~  213 (521)
                      + .++.++++..+|..+..+|.++...-...  -...--+|.+..++...++.+|+.++.+++.|+-....    ....+
T Consensus       172 l-trLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep  250 (550)
T KOG4224|consen  172 L-TRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEP  250 (550)
T ss_pred             h-HhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhccc
Confidence            4 55888999999999999998876542211  11123579999999999999999999999988742110    11236


Q ss_pred             chHHHHHHhcCCChHHHHHHHHHhHHHHHhhhC--HHHHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccChHHH--
Q 009975          214 DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN--PELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDAT--  289 (521)
Q Consensus       214 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~--~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~--  289 (521)
                      .++|.++.++.|+++.|+..|-.+|..++....  .+....--+|.+.++++++.-..-.+-+.++..++-.-+.+..  
T Consensus       251 ~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~  330 (550)
T KOG4224|consen  251 KLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIA  330 (550)
T ss_pred             chHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCccccee
Confidence            799999999999999999999999998876431  1222233578899999888776666667777777654443321  


Q ss_pred             HHhHHHHHHHhhc-CCChHHHHHHHHHHHHhhhhhchh---hHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhh--hC
Q 009975          290 IEQLLPIFLSLLK-DEFPDVRLNIISKLDQVNQVIGID---LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQ--LG  363 (521)
Q Consensus       290 ~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~--~~  363 (521)
                      ..-++..+..++. .++++++..|...+-.++......   .+....+|.+.+++-|..-.+|..+-.++..++-.  ..
T Consensus       331 dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d~~k  410 (550)
T KOG4224|consen  331 DAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALNDNDK  410 (550)
T ss_pred             cccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhccccH
Confidence            1224555566654 455679999999988876543322   22356789999999999888888877777666533  22


Q ss_pred             hhhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHHH-H-------HhhhHHHHHhhhcCcchHHHHHHHHHHHH
Q 009975          364 VGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW-A-------MQHITPQVLEMINNPHYLYRMTILRAISL  435 (521)
Q Consensus       364 ~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~-~-------~~~l~~~l~~~l~~~~~~~r~~a~~~l~~  435 (521)
                      .......++|++..+..+.+.+||..++.++..+........ +       .+.+-..+..++.+....+|..+.+++..
T Consensus       411 ~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~~YarviEawd~P~~gi~g~L~Rfl~S~~~tf~hia~wTI~q  490 (550)
T KOG4224|consen  411 EALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDVEHYARVIEAWDHPVQGIQGRLARFLASHELTFRHIARWTIQQ  490 (550)
T ss_pred             HHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            223345588999999999999999999999999886543210 0       13345566677778888888888888888


Q ss_pred             hhcc
Q 009975          436 LAPV  439 (521)
Q Consensus       436 l~~~  439 (521)
                      +.+.
T Consensus       491 Lle~  494 (550)
T KOG4224|consen  491 LLED  494 (550)
T ss_pred             HHHh
Confidence            8763

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=99.42  E-value=6.5e-10  Score=103.22  Aligned_cols=422  Identities=14%  Similarity=0.124  Sum_probs=255.2

Q ss_pred             chhHHHHHHHHHHHHHHhhcChhHHHHhHHHHHHHhhcCCCCcchhhhhhhhhhhcCCCChHHHHHHH----HHHHHhcC
Q 009975           32 EETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELR----SIYTQLCQ  107 (521)
Q Consensus        32 ~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~p~i~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~l~----~~l~~l~~  107 (521)
                      .+..+|-.|+++|-.+.+.-..-.+.    .++.+..-+....+|.+++..-.++++..... .+...    .....+.+
T Consensus       114 ~~~~~kp~AiRsL~~Vid~~tv~~~e----r~l~~a~Vs~~~a~~saalv~aYhLlp~~~~~-~~rw~ne~qeav~~l~q  188 (898)
T COG5240         114 VPDDVKPMAIRSLFSVIDGETVYDFE----RYLNQAFVSTSMARRSAALVVAYHLLPNNFNQ-TKRWLNETQEAVLDLKQ  188 (898)
T ss_pred             CccccccHHHHHHHHhcCcchhhhHH----HHhhhhccccchhhhhhHHHHhhhhccccHHH-HHHHHHHHHHHHhhHhh
Confidence            34477888888877766642211111    11122222455566666655545555543322 22222    22222222


Q ss_pred             C------------CChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcCh-hhhhh
Q 009975          108 D------------DMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP-QDCVA  174 (521)
Q Consensus       108 ~------------~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~-~~~~~  174 (521)
                      .            .++.-+..|...|.++-+.   +  .-..+.++..+..+..-.-..+.+.....+.+.+.. .....
T Consensus       189 ~p~~~~n~gy~Pn~~~isqYHalGlLyq~kr~---d--kma~lklv~hf~~n~smknq~a~V~lvr~~~~ll~~n~q~~~  263 (898)
T COG5240         189 FPNQHGNEGYEPNGNPISQYHALGLLYQSKRT---D--KMAQLKLVEHFRGNASMKNQLAGVLLVRATVELLKENSQALL  263 (898)
T ss_pred             CcCccCCcccCCCCChHHHHHHHHHHHHHhcc---c--HHHHHHHHHHhhcccccccchhheehHHHHHHHHHhChHHHH
Confidence            1            1233344443333332211   1  112233333333333222233333333444333322 23556


Q ss_pred             hhHHHHHHhcCCCChHHHHHHHHHHHHHHHHh-CCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHh
Q 009975          175 HILPVIVNFSQDKSWRVRYMVANQLYELCEAV-GPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQH  253 (521)
Q Consensus       175 ~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~-~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~  253 (521)
                      ++.|++...++|+-..|...+++.+..++..- +++. ....+..+..+++.+....|.+|+..|..++...+...  ..
T Consensus       264 q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv~~~~-~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv--~v  340 (898)
T COG5240         264 QLRPFLNSWLSDKFEMVFLEAARAVCALSEENVGSQF-VDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKV--SV  340 (898)
T ss_pred             HHHHHHHHHhcCcchhhhHHHHHHHHHHHHhccCHHH-HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCcee--ee
Confidence            78899999999999999999999988877543 3333 35567788889999999999999999999998765432  12


Q ss_pred             hhHHHHHhccCCcHHHHHHHHHHHHccccccChHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchhhHhhhHH
Q 009975          254 ILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLL  333 (521)
Q Consensus       254 ~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~  333 (521)
                      .-+.+..++.|.|..+-..|+..+-..    |.+...+.++..+..++.|-++..+.-++.++..++-.+..++  ..++
T Consensus       341 cN~evEsLIsd~Nr~IstyAITtLLKT----Gt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~--~s~l  414 (898)
T COG5240         341 CNKEVESLISDENRTISTYAITTLLKT----GTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKK--LSYL  414 (898)
T ss_pred             cChhHHHHhhcccccchHHHHHHHHHc----CchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHH--HHHH
Confidence            345567778888877666665555443    4455566777777888887777777777777777776666554  4566


Q ss_pred             HHHHH-HhcCCChHHHHHHHHHhHHHHhhhChhhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHHHHHhhhHH
Q 009975          334 PAIVE-LAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITP  412 (521)
Q Consensus       334 ~~l~~-~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~  412 (521)
                      ..+.. +.+......+.++++++..+.+..+..  .+..+..+-.++.|....  +-+...|+-+.+.-....-....+-
T Consensus       415 ~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~s--kEraLe~LC~fIEDcey~--~I~vrIL~iLG~EgP~a~~P~~yvr  490 (898)
T COG5240         415 DFLGSSLLQEGGLEFKKYMVDAISDAMENDPDS--KERALEVLCTFIEDCEYH--QITVRILGILGREGPRAKTPGKYVR  490 (898)
T ss_pred             HHHHHHHHhcccchHHHHHHHHHHHHHhhCchH--HHHHHHHHHHHHhhcchh--HHHHHHHHHhcccCCCCCCcchHHH
Confidence            66666 345677889999999998888876543  344555566666665432  1122223322211100001122333


Q ss_pred             HHHhhhcCcchHHHHHHHHHHHHhhcccChHHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHH
Q 009975          413 QVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLI  476 (521)
Q Consensus       413 ~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~  476 (521)
                      .+.+.+-=.|..+|.+|+.+++.++-........+.+...+-++++|.+..||..|..++..+-
T Consensus       491 hIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~  554 (898)
T COG5240         491 HIYNRLILENNIVRSAAVQALSKFALNISDVVSPQSVENALKRCLNDQDDEVRDRASFLLRNMR  554 (898)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHhccCccccccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhh
Confidence            3433333457889999999999999877777677888889999999999999999999988774

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.39  E-value=1.2e-09  Score=105.69  Aligned_cols=467  Identities=14%  Similarity=0.146  Sum_probs=279.5

Q ss_pred             hhhHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHHHhHHHHHHHhhcCCCCcchhhhhhhhhhhcCCCChHHHHHHHH
Q 009975           21 LLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRS  100 (521)
Q Consensus        21 l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~p~i~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~  100 (521)
                      ..+.+..-..+.-+.-|..|++....-+. +| .++...+-.++..+..++  ......+.++...|....++..-...+
T Consensus        14 ei~elks~l~s~~~~kr~~a~kkvIa~Mt-~G-~DvSslF~dvvk~~~T~d--lelKKlvyLYl~nYa~~~P~~a~~avn   89 (734)
T KOG1061|consen   14 EIPELKSQLNSQSKEKRKDAVKKVIAYMT-VG-KDVSSLFPDVVKCMQTRD--LELKKLVYLYLMNYAKGKPDLAILAVN   89 (734)
T ss_pred             hchHHHHHhhhhhhhhHHHHHHHHHhcCc-cC-cchHhhhHHHHhhcccCC--chHHHHHHHHHHHhhccCchHHHhhhh
Confidence            34444433344444566666654322111 12 333333333444333333  223345566666666666665566677


Q ss_pred             HHHHhcCCCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcChhhhhhhhHHHH
Q 009975          101 IYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVI  180 (521)
Q Consensus       101 ~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l  180 (521)
                      .+..=+.|++|.+|..|...++.+-    -+.+...+..-+....+|+++.+|..+.-+...+...-++-....-+++.+
T Consensus        90 t~~kD~~d~np~iR~lAlrtm~~l~----v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~~gl~~~L  165 (734)
T KOG1061|consen   90 TFLKDCEDPNPLIRALALRTMGCLR----VDKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVEDSGLVDAL  165 (734)
T ss_pred             hhhccCCCCCHHHHHHHhhceeeEe----ehHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhccccchhHHH
Confidence            8888889999999999888776643    245677777888888999999999999887777654432223344588888


Q ss_pred             HHhcCCCChHHHHHHHHHHHHHHHHhCCCccc---cchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHH-HHHhhhH
Q 009975          181 VNFSQDKSWRVRYMVANQLYELCEAVGPEPTR---MDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPEL-AIQHILP  256 (521)
Q Consensus       181 ~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~---~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~-~~~~~~~  256 (521)
                      ..+..|.++.|-..+..++..|...-......   ..++..+++.+..-+..-+..   .+..+....+++. -...++.
T Consensus       166 ~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~EW~qi~---IL~~l~~y~p~d~~ea~~i~~  242 (734)
T KOG1061|consen  166 KDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECTEWGQIF---ILDCLAEYVPKDSREAEDICE  242 (734)
T ss_pred             HHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhhhhhHHH---HHHHHHhcCCCCchhHHHHHH
Confidence            99999999999999999998887654432211   233344444444333333333   3444444443321 1123444


Q ss_pred             HHHHhccCCcHHHHHHHHHHHHccccccCh--HHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhch---------
Q 009975          257 CVKELSSDSSQHVRSALASVIMGMAPLLGK--DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---------  325 (521)
Q Consensus       257 ~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~---------  325 (521)
                      .+...+...+..|-..+.+.+-.....+..  +...+.+-|.+..++.... ++.--++..+..+......         
T Consensus       243 r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~~~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil~~~p~~~~~~~~~F  321 (734)
T KOG1061|consen  243 RLTPRLQHANSAVVLSAVKVILQLVKYLKQVNELLFKKVAPPLVTLLSSES-EIQYVALRNINLILQKRPEILKVEIKVF  321 (734)
T ss_pred             HhhhhhccCCcceEeehHHHHHHHHHHHHHHHHHHHHHhcccceeeecccc-hhhHHHHhhHHHHHHhChHHHHhHhHee
Confidence            444445555655555555555555544443  2334455555555554443 6666665555544332110         


Q ss_pred             -----------------------hhHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChhhhHHHHHHHHHHHcCCC
Q 009975          326 -----------------------DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDK  382 (521)
Q Consensus       326 -----------------------~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~  382 (521)
                                             +.....++..+.++..+.+...-..++++++.++-.....   ...+..++.+++-.
T Consensus       322 f~kynDPiYvK~eKleil~~la~~~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~---~~cv~~lLell~~~  398 (734)
T KOG1061|consen  322 FCKYNDPIYVKLEKLEILIELANDANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS---NDCVSILLELLETK  398 (734)
T ss_pred             eeecCCchhhHHHHHHHHHHHhhHhHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh---hhhHHHHHHHHhhc
Confidence                                   0111346666667777777776677778888877665443   45677777777765


Q ss_pred             cHHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcC-cchHHHHHHHHHHHHhhcccChHHHhhcHHHHHHhhcCCCC
Q 009975          383 VYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINN-PHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRV  461 (521)
Q Consensus       383 ~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~-~~~~~r~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~  461 (521)
                      ...|-+.+...+..+...+...  .+.+++.+...+.+ .++..|.+.+|.+|.-++.+...   .+++..+++...|+.
T Consensus       399 ~~yvvqE~~vvi~dilRkyP~~--~~~vv~~l~~~~~sl~epeak~amiWilg~y~~~i~~a---~elL~~f~en~~dE~  473 (734)
T KOG1061|consen  399 VDYVVQEAIVVIRDILRKYPNK--YESVVAILCENLDSLQEPEAKAALIWILGEYAERIENA---LELLESFLENFKDET  473 (734)
T ss_pred             ccceeeehhHHHHhhhhcCCCc--hhhhhhhhcccccccCChHHHHHHHHHHhhhhhccCcH---HHHHHHHHhhcccch
Confidence            5556566666666666665433  24566666655444 56789999999999998877654   567888888899999


Q ss_pred             chHHHHHHHHHHHHHhhhchHHHHhhHHHHHHHhcCC-CCccHHHHHH
Q 009975          462 PNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTED-PDVDVRFFAT  508 (521)
Q Consensus       462 ~~VR~~a~~~l~~~~~~~~~~~~~~~~~~~l~~l~~D-~~~~vr~~a~  508 (521)
                      ..|+...+.+.-.+.-..+. ..++.+...|.....| .++++|..+.
T Consensus       474 ~~Vql~LLta~ik~Fl~~p~-~tq~~l~~vL~~~~~d~~~~dlrDr~l  520 (734)
T KOG1061|consen  474 AEVQLELLTAAIKLFLKKPT-ETQELLQGVLPLATADTDNPDLRDRGL  520 (734)
T ss_pred             HHHHHHHHHHHHHHHhcCCc-cHHHHHHHHHhhhhccccChhhhhhHH
Confidence            88888777666555443332 2233344444444455 3568887664

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.39  E-value=2e-07  Score=94.63  Aligned_cols=345  Identities=12%  Similarity=0.140  Sum_probs=225.7

Q ss_pred             hhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCC--C---------ccccchHHHHHHhcCCC------hHHHHHHH
Q 009975          172 CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP--E---------PTRMDLVPAYVRLLRDN------EAEVRIAA  234 (521)
Q Consensus       172 ~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~--~---------~~~~~l~~~l~~~l~d~------~~~vr~~a  234 (521)
                      ....+.|++...+.-.. ..|..+|.+|..++..-.+  +         .....++|.+.+.....      ....|...
T Consensus       515 sF~~la~~l~~al~~~~-elr~~Ic~sL~~Lv~~n~~~~~a~e~~e~~s~~AknfL~~lfn~ytq~~~~~~~~l~~~~~~  593 (1176)
T KOG1248|consen  515 SFTDLAPILGAALLKRP-ELRETICNSLRMLVEQNKPSSDAAENKEVLSNDAKNFLPRLFNVYTQTVAAGRKILASRSTV  593 (1176)
T ss_pred             HHHHHHHHHHHHHhcch-HhHHHHHHHHHHHHHcCCCcchHHHHHHHHhhhhhHHHHHHHHHhcCCCccccccHHHHHHH
Confidence            34557777776665443 8999999999888765310  0         01235677777765432      23344444


Q ss_pred             HHhHH-HHHhhhCHHHHHHhhhHHHHHhccCCcHHH----HHHHHHHHHccccccChHHHHHhHHHHHHHhhcCCChHHH
Q 009975          235 AGKVT-KFCRILNPELAIQHILPCVKELSSDSSQHV----RSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVR  309 (521)
Q Consensus       235 ~~~l~-~l~~~~~~~~~~~~~~~~l~~~~~d~~~~v----r~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr  309 (521)
                      +.... ...+..+. +....+...+.....+.+..+    +...+..+..+++....... ..+..+.-..-+..+..++
T Consensus       594 L~~i~~~~~~~t~~-dv~~~l~~s~~e~as~~~~s~~~~~~~slLdl~~~~a~~~~e~~v-s~l~~v~~~~e~~~~~~vQ  671 (1176)
T KOG1248|consen  594 LEIIRVDYFTVTPT-DVVGSLKDSAGELASDLDESVASFKTLSLLDLLIALAPVQTESQV-SKLFTVDPEFENSSSTKVQ  671 (1176)
T ss_pred             HHHHHHHHhhcccH-HHHHHHHHHHHhHhccchhhhhhHHHHHHHHHHHhhhccccchhH-HHHHHhhHHhhccccHHHH
Confidence            44443 22232232 333445555566666654433    34445555555555544432 2233333334445578999


Q ss_pred             HHHHHHHHHhhhhhchhh----HhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChhh--hHHHHHHHHHHHcCCCc
Q 009975          310 LNIISKLDQVNQVIGIDL----LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLQDKV  383 (521)
Q Consensus       310 ~~a~~~l~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~  383 (521)
                      +.+...|..++.....+.    ....+...+.+-+++.....|...+.++..+.+.++.+.  +....+|-++-.+++.+
T Consensus       672 kK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~Ke~n  751 (1176)
T KOG1248|consen  672 KKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSLKEVN  751 (1176)
T ss_pred             HHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhccccc
Confidence            999999999887622222    224555556666677777889999999999999998543  23344444444449999


Q ss_pred             HHHHHHHHHHHHHHH--HHh---CHHH---HHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcc---cChHHHhhcHHHH
Q 009975          384 YSIRDAAANNLKRLA--EEF---GPEW---AMQHITPQVLEMINNPHYLYRMTILRAISLLAPV---MGSEITCSRLLPV  452 (521)
Q Consensus       384 ~~vr~~a~~~l~~l~--~~~---~~~~---~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~---~~~~~~~~~il~~  452 (521)
                      ..-|+.++.+|..+.  ...   |.+.   ..+..++.+...+-....+++...+-+++.+...   +..+.+.+.++..
T Consensus       752 ~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~  831 (1176)
T KOG1248|consen  752 VKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNILDDETLEKLISM  831 (1176)
T ss_pred             HHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence            999999999998887  222   4332   3455566665554444455555546777777653   3345567888888


Q ss_pred             HHhhcCCCCchHHHHHHHHHHHHHhhhchHHH---HhhHHHHHHHhcCCCCccHHHHHHHHHHHHHHhhc
Q 009975          453 VINASKDRVPNIKFNVAKVLQSLIPIVDQSMV---EKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMM  519 (521)
Q Consensus       453 l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~---~~~~~~~l~~l~~D~~~~vr~~a~~al~~l~~~~~  519 (521)
                      +..++....+.|+.+|+..+..++..++....   .+.++|.+..+++|....+|..+..-++.+.+.+|
T Consensus       832 V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirkfg  901 (1176)
T KOG1248|consen  832 VCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRKFG  901 (1176)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhC
Confidence            89999999999999999999999998877644   46789999999999999999999999998887765

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=99.37  E-value=3.6e-10  Score=106.45  Aligned_cols=278  Identities=24%  Similarity=0.264  Sum_probs=188.5

Q ss_pred             hhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhh
Q 009975          175 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHI  254 (521)
Q Consensus       175 ~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~  254 (521)
                      ...+.+.+...++++.+|..++..++.+.        ....+|.+.+++.|.++.||..|..+|+.+..        +..
T Consensus        43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~--------~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~--------~~a  106 (335)
T COG1413          43 EAADELLKLLEDEDLLVRLSAAVALGELG--------SEEAVPLLRELLSDEDPRVRDAAADALGELGD--------PEA  106 (335)
T ss_pred             hhHHHHHHHHcCCCHHHHHHHHHHHhhhc--------hHHHHHHHHHHhcCCCHHHHHHHHHHHHccCC--------hhH
Confidence            34556666777778888888887766543        24577888888888888888888887766543        122


Q ss_pred             hHHHHHhcc-CCcHHHHHHHHHHHHccccccChHHHHHhHHHHHHHhhcCCC------------hHHHHHHHHHHHHhhh
Q 009975          255 LPCVKELSS-DSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEF------------PDVRLNIISKLDQVNQ  321 (521)
Q Consensus       255 ~~~l~~~~~-d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~------------~~vr~~a~~~l~~~~~  321 (521)
                      .+.+...++ |+++.||..++.+++.+..        +..+..+...++|..            ..+|..+...++.+..
T Consensus       107 ~~~li~~l~~d~~~~vR~~aa~aL~~~~~--------~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~~  178 (335)
T COG1413         107 VPPLVELLENDENEGVRAAAARALGKLGD--------ERALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGELGD  178 (335)
T ss_pred             HHHHHHHHHcCCcHhHHHHHHHHHHhcCc--------hhhhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHcCC
Confidence            344444444 7888888888888877752        222444445555543            2578888888877665


Q ss_pred             hhchhhHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChhhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHh
Q 009975          322 VIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEF  401 (521)
Q Consensus       322 ~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~  401 (521)
                              +..++.+.+.+.+....+|..++..++.+....      ..+.+.+...+.|+++.||..++..++.+.   
T Consensus       179 --------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~------~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~---  241 (335)
T COG1413         179 --------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN------VEAADLLVKALSDESLEVRKAALLALGEIG---  241 (335)
T ss_pred             --------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch------hhHHHHHHHHhcCCCHHHHHHHHHHhcccC---
Confidence                    566777888888888899999988887776543      356677888889999999999888877653   


Q ss_pred             CHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChHHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhch
Q 009975          402 GPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ  481 (521)
Q Consensus       402 ~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~  481 (521)
                           .....+.+...+.+.++.++..+....+..-        .......+...+.|....+|..+...+..+...   
T Consensus       242 -----~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~---  305 (335)
T COG1413         242 -----DEEAVDALAKALEDEDVILALLAAAALGALD--------LAEAALPLLLLLIDEANAVRLEAALALGQIGQE---  305 (335)
T ss_pred             -----cchhHHHHHHHHhccchHHHHHHHHHhcccC--------chhhHHHHHHHhhcchhhHHHHHHHHHHhhccc---
Confidence                 2345566777777888877776666655111        123345566667788888999888888877653   


Q ss_pred             HHHHhhHHHHHHHhcCCCCccHHHHHHHHHHHH
Q 009975          482 SMVEKTIRPCLVELTEDPDVDVRFFATQAIQSI  514 (521)
Q Consensus       482 ~~~~~~~~~~l~~l~~D~~~~vr~~a~~al~~l  514 (521)
                           ...........+.+..+|..+......+
T Consensus       306 -----~~~~a~~~~~~~~~~~~~~~~~~~~~~~  333 (335)
T COG1413         306 -----KAVAALLLALEDGDADVRKAALILLEGI  333 (335)
T ss_pred             -----chHHHHHHHhcCCchhhHHHHHHHHHhh
Confidence                 2233334455677777777777665543

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=99.33  E-value=7.7e-11  Score=102.31  Aligned_cols=304  Identities=15%  Similarity=0.090  Sum_probs=210.2

Q ss_pred             cchHHHHHHhcC-CChHHHHHHHHHhHHHHHhhhCHHH---HHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccC-h-
Q 009975          213 MDLVPAYVRLLR-DNEAEVRIAAAGKVTKFCRILNPEL---AIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLG-K-  286 (521)
Q Consensus       213 ~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~---~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~-~-  286 (521)
                      ..++|-|++++. .+....+..|..+|..++.-.....   +-...+|.+.+++.+.+..||..+++++|+++--.. . 
T Consensus       113 aGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~R  192 (526)
T COG5064         113 AGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCR  192 (526)
T ss_pred             ccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHH
Confidence            468888999884 4455667788888888877543221   112358999999999999999999999999873211 1 


Q ss_pred             HH-HHHhHHHHHHHhhcCCCh--HHHHHHHHHHHHhhhhhch--h-hHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHh
Q 009975          287 DA-TIEQLLPIFLSLLKDEFP--DVRLNIISKLDQVNQVIGI--D-LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS  360 (521)
Q Consensus       287 ~~-~~~~l~~~l~~~l~d~~~--~vr~~a~~~l~~~~~~~~~--~-~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~  360 (521)
                      +. ...-.+..++.++.++-.  .+-+.+...|+.++..-.+  + ......+|.+.+++...++.+-.-++.+++.+..
T Consensus       193 D~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsD  272 (526)
T COG5064         193 DYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSD  272 (526)
T ss_pred             HHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhcc
Confidence            11 112345566666665544  5566788888888764332  2 1235779999999988899998888888888876


Q ss_pred             hhChh---hhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHH---HHHhhhHHHHHhhhcCcchHHHHHHHHHHH
Q 009975          361 QLGVG---FFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE---WAMQHITPQVLEMINNPHYLYRMTILRAIS  434 (521)
Q Consensus       361 ~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~  434 (521)
                      .-...   .....+.+-+.++|..++..+..-|+..+|.++......   .+.-..++.+..++.++..++|..+|++++
T Consensus       273 g~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiS  352 (526)
T COG5064         273 GPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTIS  352 (526)
T ss_pred             CcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeec
Confidence            53321   122234556788899999999999999999887533211   122346777888899999999999999999


Q ss_pred             HhhcccCh---HHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhh-chHHHH-----hhHHHHHHHhcCCCCccHHH
Q 009975          435 LLAPVMGS---EITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIV-DQSMVE-----KTIRPCLVELTEDPDVDVRF  505 (521)
Q Consensus       435 ~l~~~~~~---~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~-~~~~~~-----~~~~~~l~~l~~D~~~~vr~  505 (521)
                      .+...-..   ..+...++|.++.+++.....+|..||+++....... +.+...     +-++..|..++.-.+..|-.
T Consensus       353 NITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiie  432 (526)
T COG5064         353 NITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIE  432 (526)
T ss_pred             ccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCccchh
Confidence            98752211   2245678999999999999999999999998876542 111111     22334455566666666777


Q ss_pred             HHHHHHHHHHH
Q 009975          506 FATQAIQSIDH  516 (521)
Q Consensus       506 ~a~~al~~l~~  516 (521)
                      .+..++..+.+
T Consensus       433 v~LD~~eniLk  443 (526)
T COG5064         433 VALDAIENILK  443 (526)
T ss_pred             hhHHHHHHHHh
Confidence            88888877654

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.32  E-value=3.5e-08  Score=95.75  Aligned_cols=399  Identities=13%  Similarity=0.113  Sum_probs=208.4

Q ss_pred             chhhhhhhhhhhcCCCChHHHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCCChhHHH
Q 009975           75 ARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRL  154 (521)
Q Consensus        75 ~r~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~  154 (521)
                      +...|+..++.   -.+++....+.|.+.+++++.++.||+.|+.+...+....+  ...+.+.+-..+++.+.+..|-.
T Consensus       123 vVglAL~alg~---i~s~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P--~l~e~f~~~~~~lL~ek~hGVL~  197 (866)
T KOG1062|consen  123 VVGLALCALGN---ICSPEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVP--DLVEHFVIAFRKLLCEKHHGVLI  197 (866)
T ss_pred             ehHHHHHHhhc---cCCHHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCc--hHHHHhhHHHHHHHhhcCCceee
Confidence            33334444444   44677788999999999999999999999999999887665  34566677778888888888888


Q ss_pred             HHHHHHHHHhhhcChh-----hhhhhhHHHHHHhcCC-----------CChHHHHHHHHHHHHHHHHhCCCccccchHHH
Q 009975          155 LAVEGCAALGKLLEPQ-----DCVAHILPVIVNFSQD-----------KSWRVRYMVANQLYELCEAVGPEPTRMDLVPA  218 (521)
Q Consensus       155 ~a~~~l~~l~~~~~~~-----~~~~~l~~~l~~~~~d-----------~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~  218 (521)
                      .++..+..+++.-++.     +....++.++.++...           ++|-.+..+.+.+.-    +|           
T Consensus       198 ~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLri----LG-----------  262 (866)
T KOG1062|consen  198 AGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRI----LG-----------  262 (866)
T ss_pred             eHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHH----hc-----------
Confidence            8888888887764321     1222233333332221           223333333332221    11           


Q ss_pred             HHHhcCCChHHHHHHHHHhHHHHHhhhC------H----------------HHHHHhhhHHHHHhccCCcHHHHHHHHHH
Q 009975          219 YVRLLRDNEAEVRIAAAGKVTKFCRILN------P----------------ELAIQHILPCVKELSSDSSQHVRSALASV  276 (521)
Q Consensus       219 l~~~l~d~~~~vr~~a~~~l~~l~~~~~------~----------------~~~~~~~~~~l~~~~~d~~~~vr~~~~~~  276 (521)
                            .+++..-......|+.++...+      .                ......-+..+-+++.+++-.+|+.++..
T Consensus       263 ------q~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~  336 (866)
T KOG1062|consen  263 ------QNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNM  336 (866)
T ss_pred             ------CCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhh
Confidence                  1122222222233333333221      1                11111112222222222223334444433


Q ss_pred             HHccccccChHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHhcCCChHHHHHHHHHhH
Q 009975          277 IMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIP  356 (521)
Q Consensus       277 l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~  356 (521)
                      +....+.-+.  ..+.=-..+..+++|++..+|+.|++-...+...-..    ..++..+.+++...+...|..++.-+.
T Consensus       337 L~r~V~~d~~--avqrHr~tIleCL~DpD~SIkrralELs~~lvn~~Nv----~~mv~eLl~fL~~~d~~~k~~~as~I~  410 (866)
T KOG1062|consen  337 LLRVVQQDPT--AVQRHRSTILECLKDPDVSIKRRALELSYALVNESNV----RVMVKELLEFLESSDEDFKADIASKIA  410 (866)
T ss_pred             HHhhhcCCcH--HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccccH----HHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            3333322111  1222345677888899888988888888777664332    344555555556667778888888888


Q ss_pred             HHHhhhChhhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHh-CHH--HHHhhhHHHHHh--hhcCcchHHHHHHHH
Q 009975          357 LLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEF-GPE--WAMQHITPQVLE--MINNPHYLYRMTILR  431 (521)
Q Consensus       357 ~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~-~~~--~~~~~l~~~l~~--~l~~~~~~~r~~a~~  431 (521)
                      .+++.+.++  ..+.+..+++.++..-.-|+.-+...+-.++..- +..  .....+...+..  ...-++...-+.+.|
T Consensus       411 ~laEkfaP~--k~W~idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y~~~rLy~a~~~~~~~~is~e~l~qVa~W  488 (866)
T KOG1062|consen  411 ELAEKFAPD--KRWHIDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQELHEYAVLRLYLALSEDTLLDISQEPLLQVASW  488 (866)
T ss_pred             HHHHhcCCc--chhHHHHHHHHHHhcccccchhhHHHHHHHHhcCCcchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHH
Confidence            888777765  2344444445444443444444444444433222 211  011112112211  111234455678888


Q ss_pred             HHHHhhcccCh--------HHHhhcHHHHHHhhcCC--CCchHHHHHHHHHHHHHhhhchHHHHhhHHHHHHHhcCCCCc
Q 009975          432 AISLLAPVMGS--------EITCSRLLPVVINASKD--RVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDV  501 (521)
Q Consensus       432 ~l~~l~~~~~~--------~~~~~~il~~l~~~l~d--~~~~VR~~a~~~l~~~~~~~~~~~~~~~~~~~l~~l~~D~~~  501 (521)
                      ++|.-.+.+-.        ..-.+.++..+.+.+..  ....+|..++.++-++...+...  .+.+...+..+...-+.
T Consensus       489 ~IGEYGdlll~~~~~~~p~~vtesdivd~l~~v~~~~~s~~~tk~yal~Al~KLSsr~~s~--~~ri~~lI~~~~~s~~~  566 (866)
T KOG1062|consen  489 CIGEYGDLLLDGANEEEPIKVTESDIVDKLEKVLMSHSSDSTTKGYALTALLKLSSRFHSS--SERIKQLISSYKSSLDT  566 (866)
T ss_pred             HhhhhhHHhhcCccccCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhcccc--HHHHHHHHHHhcccccH
Confidence            88887742211        11123344444443221  13667888888887777665432  34444555555555555


Q ss_pred             cHHHHHHH
Q 009975          502 DVRFFATQ  509 (521)
Q Consensus       502 ~vr~~a~~  509 (521)
                      +.+..|.+
T Consensus       567 elQQRa~E  574 (866)
T KOG1062|consen  567 ELQQRAVE  574 (866)
T ss_pred             HHHHHHHH
Confidence            66555543

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=99.31  E-value=6.5e-10  Score=104.69  Aligned_cols=249  Identities=23%  Similarity=0.269  Sum_probs=189.0

Q ss_pred             chHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccChHHHHHhH
Q 009975          214 DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQL  293 (521)
Q Consensus       214 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l  293 (521)
                      ...+.+.+.+.|+++.+|..+...++.+..        ...+|.+...+.|.++.+|..++.+++.+.        .+..
T Consensus        43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~--------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~--------~~~a  106 (335)
T COG1413          43 EAADELLKLLEDEDLLVRLSAAVALGELGS--------EEAVPLLRELLSDEDPRVRDAAADALGELG--------DPEA  106 (335)
T ss_pred             hhHHHHHHHHcCCCHHHHHHHHHHHhhhch--------HHHHHHHHHHhcCCCHHHHHHHHHHHHccC--------ChhH
Confidence            467888899999999999999988776544        356888999999999999999999888876        3456


Q ss_pred             HHHHHHhhc-CCChHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHhcCCC------------hHHHHHHHHHhHHHHh
Q 009975          294 LPIFLSLLK-DEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRH------------WRVRLAIIEYIPLLAS  360 (521)
Q Consensus       294 ~~~l~~~l~-d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~------------~~vr~~~~~~l~~l~~  360 (521)
                      +|.+...+. |++..||..+..+++.+...        ..++.+.+..++..            |.+|..++..++.+..
T Consensus       107 ~~~li~~l~~d~~~~vR~~aa~aL~~~~~~--------~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~~  178 (335)
T COG1413         107 VPPLVELLENDENEGVRAAAARALGKLGDE--------RALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGELGD  178 (335)
T ss_pred             HHHHHHHHHcCCcHhHHHHHHHHHHhcCch--------hhhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHcCC
Confidence            777777777 79999999999999998763        22444444444433            4677777776655542


Q ss_pred             hhChhhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhccc
Q 009975          361 QLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVM  440 (521)
Q Consensus       361 ~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~  440 (521)
                              +...+.+...+.|++..||.++..+++.+....      ..+.+.+...+.++++.+|..++..++.+..  
T Consensus       179 --------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~------~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~~--  242 (335)
T COG1413         179 --------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN------VEAADLLVKALSDESLEVRKAALLALGEIGD--  242 (335)
T ss_pred             --------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch------hhHHHHHHHHhcCCCHHHHHHHHHHhcccCc--
Confidence                    345677788889999999999999998876432      3466778888999999999999999988764  


Q ss_pred             ChHHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchHHHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 009975          441 GSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDH  516 (521)
Q Consensus       441 ~~~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~~~~~~~~l~~l~~D~~~~vr~~a~~al~~l~~  516 (521)
                            ..-.+.+...+.+..+.++..+...++..-        .....+.+.....|.+..+|..+..+++.+.+
T Consensus       243 ------~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~  304 (335)
T COG1413         243 ------EEAVDALAKALEDEDVILALLAAAALGALD--------LAEAALPLLLLLIDEANAVRLEAALALGQIGQ  304 (335)
T ss_pred             ------chhHHHHHHHHhccchHHHHHHHHHhcccC--------chhhHHHHHHHhhcchhhHHHHHHHHHHhhcc
Confidence                  345567788888888888888877776211        12233444556788899999999988887654

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=99.31  E-value=1.2e-09  Score=95.09  Aligned_cols=303  Identities=13%  Similarity=0.116  Sum_probs=206.1

Q ss_pred             hHHHHHHhc-CCCChHHHHHHHHHHHHHHHHhCCC---ccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHH--H
Q 009975          176 ILPVIVNFS-QDKSWRVRYMVANQLYELCEAVGPE---PTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE--L  249 (521)
Q Consensus       176 l~~~l~~~~-~d~~~~vR~~~~~~l~~i~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~  249 (521)
                      ++|-+.+++ +......+..++.++..++..-...   ......+|.|++++.+++..||..++.+|+.++...+..  .
T Consensus       115 vVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~  194 (526)
T COG5064         115 VVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDY  194 (526)
T ss_pred             ccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHH
Confidence            666677766 4455667778888888887643322   234678999999999999999999999999987643221  1


Q ss_pred             HH-HhhhHHHHHhccCC--cHHHHHHHHHHHHccccccCh---HHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhh
Q 009975          250 AI-QHILPCVKELSSDS--SQHVRSALASVIMGMAPLLGK---DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI  323 (521)
Q Consensus       250 ~~-~~~~~~l~~~~~d~--~~~vr~~~~~~l~~i~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~  323 (521)
                      +. .-.+..+..++...  +-..-+.+-+.+++++....+   .......+|++.+++...+++|--.|+.+++.+...-
T Consensus       195 vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~  274 (526)
T COG5064         195 VLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGP  274 (526)
T ss_pred             HHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCc
Confidence            11 11333344444332  234555677888888865533   2345678999999999999999999999999886532


Q ss_pred             ch---hhHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChh---hhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH
Q 009975          324 GI---DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG---FFDDKLGALCMQWLQDKVYSIRDAAANNLKRL  397 (521)
Q Consensus       324 ~~---~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l  397 (521)
                      ..   -.+...+.+.+.+++.+++..+..-++..++.+...-...   ...-..++.+..+|+.+...+|..|+..+..+
T Consensus       275 ~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNI  354 (526)
T COG5064         275 NEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNI  354 (526)
T ss_pred             HHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeeccc
Confidence            11   1122345667888888998888888888888776543322   12234577778889999999999999999887


Q ss_pred             HHHhCHH---HHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhccc-ChHHH-----hhcHHHHHHhhcCCCCchHHHHH
Q 009975          398 AEEFGPE---WAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVM-GSEIT-----CSRLLPVVINASKDRVPNIKFNV  468 (521)
Q Consensus       398 ~~~~~~~---~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~-~~~~~-----~~~il~~l~~~l~d~~~~VR~~a  468 (521)
                      .......   .+...++|.|..++...++.+|..||+++.....+. +....     .+-++..+..+|.-....|-+.+
T Consensus       355 TAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~  434 (526)
T COG5064         355 TAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVA  434 (526)
T ss_pred             ccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCccchhhh
Confidence            5432211   133568999999999999999999999999887632 22222     23344445555544333455566


Q ss_pred             HHHHHHHHhh
Q 009975          469 AKVLQSLIPI  478 (521)
Q Consensus       469 ~~~l~~~~~~  478 (521)
                      +.++..+.+.
T Consensus       435 LD~~eniLk~  444 (526)
T COG5064         435 LDAIENILKV  444 (526)
T ss_pred             HHHHHHHHhh
Confidence            7777766543

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=99.31  E-value=1.4e-07  Score=97.73  Aligned_cols=491  Identities=16%  Similarity=0.152  Sum_probs=286.1

Q ss_pred             hHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHHHhHHHHHHHhhcCCCCcchhhhhhhhhhhcCCCChHHHHHHHHHH
Q 009975           23 PPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIY  102 (521)
Q Consensus        23 ~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~p~i~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~~l  102 (521)
                      ..+...+..+...+|..|++++..+.+.-+.-.....+...+-.-..|....+|.++..++|...-..++ ...+....+
T Consensus       819 k~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e-~~~qyY~~i  897 (1692)
T KOG1020|consen  819 KLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPE-LIFQYYDQI  897 (1692)
T ss_pred             HHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHH-HHHHHHHHH
Confidence            3334445677889999999999999987544344455555555556677889999999999987754444 466777777


Q ss_pred             HHhcCCCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcChh-----hhhhhh-
Q 009975          103 TQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ-----DCVAHI-  176 (521)
Q Consensus       103 ~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~-----~~~~~l-  176 (521)
                      .+-+.|+.-.||+.+++.+..++...+.=....+++.-+..-.+|++.++...+.+++..+.=.-.++     .....+ 
T Consensus       898 ~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~~~cakmlrRv~DEEg~I~kLv~etf~klWF~p~~~~~d~~~~~~kI~  977 (1692)
T KOG1020|consen  898 IERILDTGVSVRKRVIKILRDICEETPDFSKIVDMCAKMLRRVNDEEGNIKKLVRETFLKLWFTPVPEVNDQPAKARKIS  977 (1692)
T ss_pred             HhhcCCCchhHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHhccCCCcccccHHHHHhhH
Confidence            77789999999999999999999877653344555555666678888889999999998875321111     111111 


Q ss_pred             --HHHHH---HhcCCCChHHHHHHHHHH--HHHHHHhCCC--ccccchHHHHHHhc------------CCChHHHHH-HH
Q 009975          177 --LPVIV---NFSQDKSWRVRYMVANQL--YELCEAVGPE--PTRMDLVPAYVRLL------------RDNEAEVRI-AA  234 (521)
Q Consensus       177 --~~~l~---~~~~d~~~~vR~~~~~~l--~~i~~~~~~~--~~~~~l~~~l~~~l------------~d~~~~vr~-~a  234 (521)
                        .....   .+..+..+..=.....--  ........+.  ....+.+..+..++            .+++.++|. +.
T Consensus       978 ~~~~vv~~~~d~~~~~~eqLl~~ilk~~~~~~~~~~~~~v~~~~v~~~~~L~~~cl~~~i~ev~~~~~~~~~~~~~~~~~ 1057 (1692)
T KOG1020|consen  978 LEVDVVMSQVDLMNDWLEQLLDHILKFYLLKTMKESVKPVALAKVTHVLNLLTHCLVEKISEVESDDMNEEESEVRLLAY 1057 (1692)
T ss_pred             HHHHHHHHHHHHhcChHHHHHHHHHHHHHhhhhhhhhhHHHHhhcchHHHHHHHHHHHHHHhhhhHhhhcccchhHHHHH
Confidence              11111   111122111100000000  0000000000  00122223322222            223345554 44


Q ss_pred             HHhHHHHHhhhCHH---HHHHhhhHHHHHhccC-CcHHHHHHHHHHHHccccccC--hHHHHHhHHHHHHHhhcCCChHH
Q 009975          235 AGKVTKFCRILNPE---LAIQHILPCVKELSSD-SSQHVRSALASVIMGMAPLLG--KDATIEQLLPIFLSLLKDEFPDV  308 (521)
Q Consensus       235 ~~~l~~l~~~~~~~---~~~~~~~~~l~~~~~d-~~~~vr~~~~~~l~~i~~~~~--~~~~~~~l~~~l~~~l~d~~~~v  308 (521)
                      +.+|..++...+.-   .+...+.|++..-++. ...++-...+..+..+.+...  .+.+...+=..+.+++-..+..+
T Consensus      1058 lstL~~FskirP~Llt~khv~tL~PYL~s~~~t~~~~~fl~~vi~Ile~VlPlv~~~sesfL~sLEe~L~~~i~k~g~a~ 1137 (1692)
T KOG1020|consen 1058 LSTLFVFSKIRPQLLTKKHVITLQPYLTSKASTIEEAQFLYYVIQILECVLPLVANPSESFLASLEEDLLKRIVKMGMAT 1137 (1692)
T ss_pred             HHHHHHHHhcCchhccHHHHHHhhhHHhccccchHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHhcchHH
Confidence            55555555543221   2334567777655332 334555566666665555442  24444555555666665666677


Q ss_pred             HHHHHHHHHHhhhhh--chhhHhhhHHHHHHHHh-------cCC----ChHHHHHHHHHhHHHHhhhC--------hh--
Q 009975          309 RLNIISKLDQVNQVI--GIDLLSQSLLPAIVELA-------EDR----HWRVRLAIIEYIPLLASQLG--------VG--  365 (521)
Q Consensus       309 r~~a~~~l~~~~~~~--~~~~~~~~~~~~l~~~~-------~~~----~~~vr~~~~~~l~~l~~~~~--------~~--  365 (521)
                      ...|+.+++.+....  |.... ...+..+...+       .+.    +...-...+.+++.++.++.        +.  
T Consensus      1138 V~~~vsCl~sl~~k~~~~~~~v-~~cf~~~~k~le~~k~s~~en~~~~~~p~l~RsiftlG~l~Ryfdf~~~~~~g~~~~ 1216 (1692)
T KOG1020|consen 1138 VVEAVSCLGSLATKRTDGAKVV-KACFSCYLKLLEVIKSSNNENADIVNFPKLQRSIFTLGLLSRYFDFPKPSNDGKTFL 1216 (1692)
T ss_pred             HHHHHHHHHHHHhhhccchHHH-HHHHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHHHHHHhccCCCccCCCccch
Confidence            777888888887753  22222 23333322221       122    21222334567777777542        11  


Q ss_pred             ----hhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCcchH--HHHHHHHHHHHhhc-
Q 009975          366 ----FFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYL--YRMTILRAISLLAP-  438 (521)
Q Consensus       366 ----~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~--~r~~a~~~l~~l~~-  438 (521)
                          ...++++..+.-+.++.+..+|..|+.++|.++-.-..-+....+...+.+.+.+.+..  .+..++..+..... 
T Consensus      1217 ~~~~~~~e~v~~lL~~f~k~~~~~lR~~al~~Lg~~ci~hp~l~~~~~v~nly~~ila~~n~~~~~ki~~l~n~~~yL~e 1296 (1692)
T KOG1020|consen 1217 QEGETLKEKVLILLMYFSKDKDGELRRKALINLGFICIQHPSLFTSREVLNLYDEILADDNSDIKSKIQLLQNLELYLLE 1296 (1692)
T ss_pred             hhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHH
Confidence                33456677777778888899999999999999865443333444555555555543321  12333322222221 


Q ss_pred             -----------------------------ccChH----HHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchHHHH
Q 009975          439 -----------------------------VMGSE----ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVE  485 (521)
Q Consensus       439 -----------------------------~~~~~----~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~~  485 (521)
                                                   ..|..    -+.+.+++.++..+-|.+..+|..|++.+..+....=..  -
T Consensus      1297 ee~~l~~~~~~w~~~~k~edlkem~~v~sg~~s~~~~~~i~Qlfl~~ILe~cl~~d~~~r~~aikvl~liL~QGLVh--P 1374 (1692)
T KOG1020|consen 1297 EEKKLRNKGKNWTKSNKSEDLKEMLDVSSGMGSSDGVSAIMQLFLDNILESCLDRDLQVRLVAIKVLKLILNQGLVH--P 1374 (1692)
T ss_pred             HHHHHHhcccchhhhhhHHHHHhhcccccccccccchHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHccCCC--c
Confidence                                         11111    134678888888888999999999999999887642111  1


Q ss_pred             hhHHHHHHHhcCCCCccHHHHHHHHHHHHHHh
Q 009975          486 KTIRPCLVELTEDPDVDVRFFATQAIQSIDHV  517 (521)
Q Consensus       486 ~~~~~~l~~l~~D~~~~vr~~a~~al~~l~~~  517 (521)
                      ....|.|..+.+|+....|..|-.-+..+.+.
T Consensus      1375 ~~cvPtLIAL~Tdp~~~~r~~Ad~LL~eid~k 1406 (1692)
T KOG1020|consen 1375 VHCVPTLIALETDPSQAIRHVADELLKEIDEK 1406 (1692)
T ss_pred             cchhhhheeecCChHHHHHHHHHHHHHHHHHh
Confidence            35678899999999999999999888877653

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.28  E-value=1.6e-09  Score=102.36  Aligned_cols=301  Identities=15%  Similarity=0.135  Sum_probs=190.4

Q ss_pred             CCChHHHHHHHHHHHHHHHHhCCC-ccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhhhHHHHHhccC
Q 009975          186 DKSWRVRYMVANQLYELCEAVGPE-PTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSD  264 (521)
Q Consensus       186 d~~~~vR~~~~~~l~~i~~~~~~~-~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d  264 (521)
                      +.+..+|..+......++..-.+- .....+...+..+..|.+..||..|++++-.+.+..   .....+.....+++.|
T Consensus       169 ~~s~~~~~~~~~~~~~lg~~~ss~~~d~~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~---kL~~~~Y~~A~~~lsD  245 (823)
T KOG2259|consen  169 ISSTGNRLLLYCFHLPLGVSPSSLTHDREHAARGLIYLEHDQDFRVRTHAVEGLLALSEGF---KLSKACYSRAVKHLSD  245 (823)
T ss_pred             cccccchHHHHHHhhhcccCCCcccccHHHHHHHHHHHhcCCCcchHHHHHHHHHhhcccc---cccHHHHHHHHHHhcc
Confidence            344445555544443333221111 112456666788889999999999999998888732   1234456677888899


Q ss_pred             CcHHHHHHHHHHHHccccccC--h------HHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchhhHhhhHHHHH
Q 009975          265 SSQHVRSALASVIMGMAPLLG--K------DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAI  336 (521)
Q Consensus       265 ~~~~vr~~~~~~l~~i~~~~~--~------~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l  336 (521)
                      .+..||.+|++.+...++..+  .      ....+..+.-+...+.|-+..||-.|.+.++.+...-.     +.+...+
T Consensus       246 ~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSe-----e~i~QTL  320 (823)
T KOG2259|consen  246 DYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSE-----EIIQQTL  320 (823)
T ss_pred             hHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHH-----HHHHHHH
Confidence            999999999888877766551  1      12234566777888899999999999999998865321     1112222


Q ss_pred             HH-Hh-cCCChHHHHHHHHHh---HHHH--hhhChhhhH-------HHH-----HHHHHHHcCCCcHHHHHHHHHHHHHH
Q 009975          337 VE-LA-EDRHWRVRLAIIEYI---PLLA--SQLGVGFFD-------DKL-----GALCMQWLQDKVYSIRDAAANNLKRL  397 (521)
Q Consensus       337 ~~-~~-~~~~~~vr~~~~~~l---~~l~--~~~~~~~~~-------~~l-----~~~l~~~l~d~~~~vr~~a~~~l~~l  397 (521)
                      .+ +. .+.-|+......+.+   +.+.  +..+.+.-.       ..+     ...+...++|...+||.+|...+..+
T Consensus       321 dKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~L  400 (823)
T KOG2259|consen  321 DKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSL  400 (823)
T ss_pred             HHHHhhhhhhhhhcccchHHHHhcCCcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHH
Confidence            11 11 111122111111111   1000  001111000       112     23567788999999999999999988


Q ss_pred             HHHhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChHHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHh
Q 009975          398 AEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIP  477 (521)
Q Consensus       398 ~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~  477 (521)
                      +..  ...+...-+..|.++++|....+|.-|+.++..++.++.   +.+..++.+...+.|.+.+||.+.-..|+..- 
T Consensus       401 a~s--sP~FA~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~---i~eeql~~il~~L~D~s~dvRe~l~elL~~~~-  474 (823)
T KOG2259|consen  401 ATS--SPGFAVRALDFLVDMFNDEIEVVRLKAIFALTMISVHLA---IREEQLRQILESLEDRSVDVREALRELLKNAR-  474 (823)
T ss_pred             HcC--CCCcHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhe---ecHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-
Confidence            743  223456788899999999999999999999999998733   45778999999999999999998888876532 


Q ss_pred             hhchHHH---HhhHHHHHHHhcCCCC
Q 009975          478 IVDQSMV---EKTIRPCLVELTEDPD  500 (521)
Q Consensus       478 ~~~~~~~---~~~~~~~l~~l~~D~~  500 (521)
                      ..+.+.+   ...++..|.+.-+|.|
T Consensus       475 ~~d~~~i~m~v~~lL~~L~kyPqDrd  500 (823)
T KOG2259|consen  475 VSDLECIDMCVAHLLKNLGKYPQDRD  500 (823)
T ss_pred             CCcHHHHHHHHHHHHHHhhhCCCCcH
Confidence            1122222   2444444444555544

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=99.28  E-value=4.3e-10  Score=99.47  Aligned_cols=187  Identities=18%  Similarity=0.252  Sum_probs=122.4

Q ss_pred             hhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhCh----hhhHHH---HHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhC
Q 009975          330 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV----GFFDDK---LGALCMQWLQDKVYSIRDAAANNLKRLAEEFG  402 (521)
Q Consensus       330 ~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~----~~~~~~---l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~  402 (521)
                      +.+...|.+.-.+.+|..|..++..+..+......    +.+.+.   +.+.+...+.|....|-..|+.+++.++..+|
T Consensus         6 ~~~~~~l~~~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~   85 (228)
T PF12348_consen    6 EEILAALEKKESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLG   85 (228)
T ss_dssp             GGS-TTHHHHHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHG
T ss_pred             HHHHHHHhccCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Confidence            34444554445677888888888888887766511    122222   23566677778788888888888888888887


Q ss_pred             HHH--HHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChHHHhhcH-HHHHHhhcCCCCchHHHHHHHHHHHHHhhh
Q 009975          403 PEW--AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRL-LPVVINASKDRVPNIKFNVAKVLQSLIPIV  479 (521)
Q Consensus       403 ~~~--~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~i-l~~l~~~l~d~~~~VR~~a~~~l~~~~~~~  479 (521)
                      ..+  +.+.++|.|.+.+.+++..+|..+..++..+....+   +...+ .+.+..+..+.++.+|..++..+..+....
T Consensus        86 ~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~---~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~  162 (228)
T PF12348_consen   86 SHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCS---YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKW  162 (228)
T ss_dssp             GGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS----H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-
T ss_pred             HhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC---cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHc
Confidence            653  457788888888888888888888888888888766   12334 777788888888999999988888888776


Q ss_pred             c--hH-----HHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHHhhc
Q 009975          480 D--QS-----MVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMM  519 (521)
Q Consensus       480 ~--~~-----~~~~~~~~~l~~l~~D~~~~vr~~a~~al~~l~~~~~  519 (521)
                      +  ..     ...+.+.+.+.++++|++++||..|..++..+.+..+
T Consensus       163 ~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~  209 (228)
T PF12348_consen  163 GSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFP  209 (228)
T ss_dssp             ----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-
T ss_pred             cchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC
Confidence            6  11     1225688888888899999999999998888877765

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=99.28  E-value=1.2e-10  Score=111.33  Aligned_cols=253  Identities=18%  Similarity=0.216  Sum_probs=206.6

Q ss_pred             CCcHHHHHHHHHHHHccccccChHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHhcCC
Q 009975          264 DSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDR  343 (521)
Q Consensus       264 d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~  343 (521)
                      -++..-|......+....+.++++.....++|.+...+.-.+  --...+.-+-.+.+.+..+.+...++|.+.++++.+
T Consensus       265 lks~~eK~~Ff~~L~~~l~~~pe~i~~~kvlp~Ll~~~~~g~--a~~~~ltpl~k~~k~ld~~eyq~~i~p~l~kLF~~~  342 (690)
T KOG1243|consen  265 LKSVEEKQKFFSGLIDRLDNFPEEIIASKVLPILLAALEFGD--AASDFLTPLFKLGKDLDEEEYQVRIIPVLLKLFKSP  342 (690)
T ss_pred             cCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccc--cchhhhhHHHHhhhhccccccccchhhhHHHHhcCc
Confidence            345556677777777778888888888889998887765443  111122223333333443446678999999999999


Q ss_pred             ChHHHHHHHHHhHHHHhhhChhhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCcch
Q 009975          344 HWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHY  423 (521)
Q Consensus       344 ~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~  423 (521)
                      +..+|...+..+..+...+.++.+.+.+.|.+...+.|.++.+|+.+++++..++..++......+++..+...-.|.+.
T Consensus       343 Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~Ln~Ellr~~ar~q~d~~~  422 (690)
T KOG1243|consen  343 DRQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRNLNGELLRYLARLQPDEHG  422 (690)
T ss_pred             chHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhhhcHHHHHHHHhhCccccC
Confidence            99999999999999999999999999999999999999999999999999999999998887777888888887778999


Q ss_pred             HHHHHHHHHHHHhhcccChHHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchHHHHhhHHHHHHHhcCCCCccH
Q 009975          424 LYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDV  503 (521)
Q Consensus       424 ~~r~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~~~~~~~~l~~l~~D~~~~v  503 (521)
                      .+|....-+++.++.++....-...+.....+.++|+-..-|.++...+....+.+........++|.+.-+.-|++..|
T Consensus       423 ~irtntticlgki~~~l~~~~R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~~~~va~kIlp~l~pl~vd~e~~v  502 (690)
T KOG1243|consen  423 GIRTNTTICLGKIAPHLAASVRKRVLASAFTRALKDPFVPARKAGVLALAATQEYFDQSEVANKILPSLVPLTVDPEKTV  502 (690)
T ss_pred             cccccceeeecccccccchhhhccccchhhhhhhcCCCCCchhhhhHHHhhcccccchhhhhhhccccccccccCcccch
Confidence            99999999999999887665533333344455799999999999999999999988888889999999999999999999


Q ss_pred             HHHHHHHHHHHHHhh
Q 009975          504 RFFATQAIQSIDHVM  518 (521)
Q Consensus       504 r~~a~~al~~l~~~~  518 (521)
                      |..|.+++.......
T Consensus       503 r~~a~~~i~~fl~kl  517 (690)
T KOG1243|consen  503 RDTAEKAIRQFLEKL  517 (690)
T ss_pred             hhHHHHHHHHHHhhh
Confidence            999999998765544

>TIGR02270 conserved hypothetical protein

Probab=99.27  E-value=1.8e-09  Score=101.50  Aligned_cols=241  Identities=13%  Similarity=0.060  Sum_probs=109.3

Q ss_pred             hhHHHHHHhc-CCCChHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHh
Q 009975          175 HILPVIVNFS-QDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQH  253 (521)
Q Consensus       175 ~l~~~l~~~~-~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~  253 (521)
                      ...+.+...+ .+++..++..++..+...        .....+..+.+.+.|.++.||.++.++|+.+..        ..
T Consensus        54 ~a~~~L~~aL~~d~~~ev~~~aa~al~~~--------~~~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~--------~~  117 (410)
T TIGR02270        54 AATELLVSALAEADEPGRVACAALALLAQ--------EDALDLRSVLAVLQAGPEGLCAGIQAALGWLGG--------RQ  117 (410)
T ss_pred             hHHHHHHHHHhhCCChhHHHHHHHHHhcc--------CChHHHHHHHHHhcCCCHHHHHHHHHHHhcCCc--------hH
Confidence            3444444444 345555555444333211        112335555555555555566666555554322        12


Q ss_pred             hhHHHHHhccCCcHHHHHHHHHHHHccccccChHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchhhHhhhHH
Q 009975          254 ILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLL  333 (521)
Q Consensus       254 ~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~  333 (521)
                      ..+.+..+++++++.||..++.+++...         ..-.+.+...++|+++.||..|+.+++.+..        ....
T Consensus       118 a~~~L~~~L~~~~p~vR~aal~al~~r~---------~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~--------~~a~  180 (410)
T TIGR02270       118 AEPWLEPLLAASEPPGRAIGLAALGAHR---------HDPGPALEAALTHEDALVRAAALRALGELPR--------RLSE  180 (410)
T ss_pred             HHHHHHHHhcCCChHHHHHHHHHHHhhc---------cChHHHHHHHhcCCCHHHHHHHHHHHHhhcc--------ccch
Confidence            2344444445555556655554444421         1123344445555556666666655555443        2334


Q ss_pred             HHHHHHhcCCChHHHHHHHHHhHHHHhhhChhhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHHHHHhhhHHH
Q 009975          334 PAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQ  413 (521)
Q Consensus       334 ~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~  413 (521)
                      |.+.....|.++.||..++..+..+.    ..    .-.+.+.....++...++..+...++..    |.    ...++.
T Consensus       181 ~~L~~al~d~~~~VR~aA~~al~~lG----~~----~A~~~l~~~~~~~g~~~~~~l~~~lal~----~~----~~a~~~  244 (410)
T TIGR02270       181 STLRLYLRDSDPEVRFAALEAGLLAG----SR----LAWGVCRRFQVLEGGPHRQRLLVLLAVA----GG----PDAQAW  244 (410)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHcC----CH----hHHHHHHHHHhccCccHHHHHHHHHHhC----Cc----hhHHHH
Confidence            44445555555555555555543321    11    1122333323333333333332222211    11    134444


Q ss_pred             HHhhhcCcchHHHHHHHHHHHHhhcccChHHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHH
Q 009975          414 VLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLI  476 (521)
Q Consensus       414 l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~  476 (521)
                      |..++++++  +|..++.++|.+..        +..++.++..++|+.  +|..|..++..|.
T Consensus       245 L~~ll~d~~--vr~~a~~AlG~lg~--------p~av~~L~~~l~d~~--~aR~A~eA~~~It  295 (410)
T TIGR02270       245 LRELLQAAA--TRREALRAVGLVGD--------VEAAPWCLEAMREPP--WARLAGEAFSLIT  295 (410)
T ss_pred             HHHHhcChh--hHHHHHHHHHHcCC--------cchHHHHHHHhcCcH--HHHHHHHHHHHhh
Confidence            555555443  55555555555432        334455555555443  5555555555544

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.23  E-value=1.8e-07  Score=90.96  Aligned_cols=250  Identities=10%  Similarity=0.105  Sum_probs=152.6

Q ss_pred             hHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccChHHHHHhHH
Q 009975          215 LVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL  294 (521)
Q Consensus       215 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~  294 (521)
                      -+.++-+++...+.++|..|+..|..+...-+..  .+.=-..+.+.++|++..+|+-+.+....+...-.    ...++
T Consensus       314 ainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~a--vqrHr~tIleCL~DpD~SIkrralELs~~lvn~~N----v~~mv  387 (866)
T KOG1062|consen  314 AINILGKFLLNRDNNIRYVALNMLLRVVQQDPTA--VQRHRSTILECLKDPDVSIKRRALELSYALVNESN----VRVMV  387 (866)
T ss_pred             HHHHHHHHhcCCccceeeeehhhHHhhhcCCcHH--HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhcccc----HHHHH
Confidence            4455555666666677877777777765543222  23334566777899999999999988887764433    23455


Q ss_pred             HHHHHhhcCCChHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhh-hChhhhHHHHHH
Q 009975          295 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQ-LGVGFFDDKLGA  373 (521)
Q Consensus       295 ~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~-~~~~~~~~~l~~  373 (521)
                      .-++..+...+++.+..++..+..+++.+.++.  ...++.+...+.....-|+..+...+-.+... ++... ......
T Consensus       388 ~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~k--~W~idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~-~y~~~r  464 (866)
T KOG1062|consen  388 KELLEFLESSDEDFKADIASKIAELAEKFAPDK--RWHIDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQELH-EYAVLR  464 (866)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHHHhcCCcc--hhHHHHHHHHHHhcccccchhhHHHHHHHHhcCCcchh-hHHHHH
Confidence            555566666688999999999999998888765  23455555555444444444444444333333 23321 111111


Q ss_pred             HHHHHcC-----CCcHHHHHHHHHHHHHHHHHh--CH---H---HHHhhhHHHHHhhhcC--cchHHHHHHHHHHHHhhc
Q 009975          374 LCMQWLQ-----DKVYSIRDAAANNLKRLAEEF--GP---E---WAMQHITPQVLEMINN--PHYLYRMTILRAISLLAP  438 (521)
Q Consensus       374 ~l~~~l~-----d~~~~vr~~a~~~l~~l~~~~--~~---~---~~~~~l~~~l~~~l~~--~~~~~r~~a~~~l~~l~~  438 (521)
                      +......     -.....-+.+..++|+....+  |.   +   .-...++..+.+.+..  .+..++..++.++.++..
T Consensus       465 Ly~a~~~~~~~~is~e~l~qVa~W~IGEYGdlll~~~~~~~p~~vtesdivd~l~~v~~~~~s~~~tk~yal~Al~KLSs  544 (866)
T KOG1062|consen  465 LYLALSEDTLLDISQEPLLQVASWCIGEYGDLLLDGANEEEPIKVTESDIVDKLEKVLMSHSSDSTTKGYALTALLKLSS  544 (866)
T ss_pred             HHHHHhhhhhhhhhhhhHHHHHHHHhhhhhHHhhcCccccCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHh
Confidence            1111111     133445677888998877433  10   0   1124456666655433  358899999999999987


Q ss_pred             ccChHHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHH
Q 009975          439 VMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSL  475 (521)
Q Consensus       439 ~~~~~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~  475 (521)
                      .+...  .+.+-..+......-+..+++.|.+.=..+
T Consensus       545 r~~s~--~~ri~~lI~~~~~s~~~elQQRa~E~~~l~  579 (866)
T KOG1062|consen  545 RFHSS--SERIKQLISSYKSSLDTELQQRAVEYNALF  579 (866)
T ss_pred             hcccc--HHHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence            66654  456666777777777888998887754444

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.23  E-value=1.5e-08  Score=96.02  Aligned_cols=238  Identities=22%  Similarity=0.218  Sum_probs=156.1

Q ss_pred             hHHHHHHHHHHHHhhhcCh-hhhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHH
Q 009975          151 SVRLLAVEGCAALGKLLEP-QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAE  229 (521)
Q Consensus       151 ~vr~~a~~~l~~l~~~~~~-~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~  229 (521)
                      .+|..+......++..-.+ ......+..-+..++.|.++.||..|++++-.+...++   ..........+.++|++..
T Consensus       173 ~~~~~~~~~~~~lg~~~ss~~~d~~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~k---L~~~~Y~~A~~~lsD~~e~  249 (823)
T KOG2259|consen  173 GNRLLLYCFHLPLGVSPSSLTHDREHAARGLIYLEHDQDFRVRTHAVEGLLALSEGFK---LSKACYSRAVKHLSDDYED  249 (823)
T ss_pred             cchHHHHHHhhhcccCCCcccccHHHHHHHHHHHhcCCCcchHHHHHHHHHhhccccc---ccHHHHHHHHHHhcchHHH
Confidence            4455555554444433221 11223344446667777777788887777665554111   1234556666777777778


Q ss_pred             HHHHHHHhHHHHHhhhC-H-------HHHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccC--------hHHH----
Q 009975          230 VRIAAAGKVTKFCRILN-P-------ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLG--------KDAT----  289 (521)
Q Consensus       230 vr~~a~~~l~~l~~~~~-~-------~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~--------~~~~----  289 (521)
                      ||.+|++.+...++..+ +       .......+..+.....|-+|.||-.+++.+|.+-..-.        ++..    
T Consensus       250 VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lR  329 (823)
T KOG2259|consen  250 VRKAAVQLVSVWGNRCPAPLERESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLR  329 (823)
T ss_pred             HHHHHHHHHHHHHhcCCCcccchhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhh
Confidence            88888777766666551 1       12344556666677777777777777777776532110        0000    


Q ss_pred             ------------------------------------HHhHH-----HHHHHhhcCCChHHHHHHHHHHHHhhhhhchhhH
Q 009975          290 ------------------------------------IEQLL-----PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL  328 (521)
Q Consensus       290 ------------------------------------~~~l~-----~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~  328 (521)
                                                          .+.++     ..+...+.|+.-+||.+|+.+++.++..-.  .+
T Consensus       330 Rkr~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP--~F  407 (823)
T KOG2259|consen  330 RKRTAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSP--GF  407 (823)
T ss_pred             hhhhcccchHHHHhcCCcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCC--Cc
Confidence                                                01122     245566778888999999999999875322  23


Q ss_pred             hhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChhhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q 009975          329 SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKR  396 (521)
Q Consensus       329 ~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~  396 (521)
                      ....+..+.++++|+...||..++.++..++.++.   ..+..++.+...+.|.+.++|++.-+.|+.
T Consensus       408 A~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~---i~eeql~~il~~L~D~s~dvRe~l~elL~~  472 (823)
T KOG2259|consen  408 AVRALDFLVDMFNDEIEVVRLKAIFALTMISVHLA---IREEQLRQILESLEDRSVDVREALRELLKN  472 (823)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhe---ecHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence            36778899999999999999999999999998843   346678899999999999999987776654

>TIGR02270 conserved hypothetical protein

Probab=99.21  E-value=5e-09  Score=98.61  Aligned_cols=242  Identities=15%  Similarity=0.062  Sum_probs=168.7

Q ss_pred             HHHHHHHHHhh-cCCChhHHHHHHHHHHHHhhhcChhhhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCcccc
Q 009975          135 TDIMSIFEDLT-QDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRM  213 (521)
Q Consensus       135 ~~l~~~l~~l~-~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~  213 (521)
                      +...+.+...+ .+++..++..++..+..        ......+..+...+.|.++.||..++++|+.+-        .+
T Consensus        53 ~~a~~~L~~aL~~d~~~ev~~~aa~al~~--------~~~~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~--------~~  116 (410)
T TIGR02270        53 KAATELLVSALAEADEPGRVACAALALLA--------QEDALDLRSVLAVLQAGPEGLCAGIQAALGWLG--------GR  116 (410)
T ss_pred             HhHHHHHHHHHhhCCChhHHHHHHHHHhc--------cCChHHHHHHHHHhcCCCHHHHHHHHHHHhcCC--------ch
Confidence            56667666666 56677777665544431        123334788888888999999999999988643        35


Q ss_pred             chHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccChHHHHHhH
Q 009975          214 DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQL  293 (521)
Q Consensus       214 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l  293 (521)
                      ...+.+..+++++++.||.+++.+++....         .-.+.+...++|.++.||..++.+++.+.        ....
T Consensus       117 ~a~~~L~~~L~~~~p~vR~aal~al~~r~~---------~~~~~L~~~L~d~d~~Vra~A~raLG~l~--------~~~a  179 (410)
T TIGR02270       117 QAEPWLEPLLAASEPPGRAIGLAALGAHRH---------DPGPALEAALTHEDALVRAAALRALGELP--------RRLS  179 (410)
T ss_pred             HHHHHHHHHhcCCChHHHHHHHHHHHhhcc---------ChHHHHHHHhcCCCHHHHHHHHHHHHhhc--------cccc
Confidence            677888889999999999888877766221         12345666677999999999999998876        2345


Q ss_pred             HHHHHHhhcCCChHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChhhhHHHHHH
Q 009975          294 LPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGA  373 (521)
Q Consensus       294 ~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~  373 (521)
                      .|.+...+.|.++.||..|+.++..+..        ....+.+..+..++.+..+..+...+...    |.    +..++
T Consensus       180 ~~~L~~al~d~~~~VR~aA~~al~~lG~--------~~A~~~l~~~~~~~g~~~~~~l~~~lal~----~~----~~a~~  243 (410)
T TIGR02270       180 ESTLRLYLRDSDPEVRFAALEAGLLAGS--------RLAWGVCRRFQVLEGGPHRQRLLVLLAVA----GG----PDAQA  243 (410)
T ss_pred             hHHHHHHHcCCCHHHHHHHHHHHHHcCC--------HhHHHHHHHHHhccCccHHHHHHHHHHhC----Cc----hhHHH
Confidence            6667778999999999999999977644        23345555544555555544444333222    22    25677


Q ss_pred             HHHHHcCCCcHHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhh
Q 009975          374 LCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLA  437 (521)
Q Consensus       374 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~  437 (521)
                      .+..+++|++  +|..++.+++.+.        ....++.+...+.++.  +|..|-+++..+.
T Consensus       244 ~L~~ll~d~~--vr~~a~~AlG~lg--------~p~av~~L~~~l~d~~--~aR~A~eA~~~It  295 (410)
T TIGR02270       244 WLRELLQAAA--TRREALRAVGLVG--------DVEAAPWCLEAMREPP--WARLAGEAFSLIT  295 (410)
T ss_pred             HHHHHhcChh--hHHHHHHHHHHcC--------CcchHHHHHHHhcCcH--HHHHHHHHHHHhh
Confidence            7788888866  8999888888653        2346677777777665  7777888888776

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.21  E-value=6.1e-08  Score=93.79  Aligned_cols=288  Identities=13%  Similarity=0.151  Sum_probs=184.7

Q ss_pred             hhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHH
Q 009975          173 VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQ  252 (521)
Q Consensus       173 ~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~  252 (521)
                      ...+++.+..++.+++..|-..++.++..+....+.+..  ..+..+.-+++.+....|.+|...|..++...+...  .
T Consensus       243 ~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~l~--pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v--~  318 (865)
T KOG1078|consen  243 DSPLFPFLESCLRHKSEMVIYEAARAIVSLPNTNSRELA--PAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAV--T  318 (865)
T ss_pred             hhhHHHHHHHHHhchhHHHHHHHHHHHhhccccCHhhcc--hHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccc--c
Confidence            346788888899999999999999988766554443332  267778888999999999999999999998776542  1


Q ss_pred             hhhHHHHHhccCCcHHHHHHHHHHHHccccccChHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchhhHhhhH
Q 009975          253 HILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSL  332 (521)
Q Consensus       253 ~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~  332 (521)
                      ..-.-+..++.|.|..+-..+...+-..    |.+...+.++..+.....|-+.+.+.-+..++..++..+...+  ..+
T Consensus       319 ~cN~elE~lItd~NrsIat~AITtLLKT----G~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~--~~~  392 (865)
T KOG1078|consen  319 VCNLDLESLITDSNRSIATLAITTLLKT----GTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKH--TVM  392 (865)
T ss_pred             ccchhHHhhhcccccchhHHHHHHHHHh----cchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHH--HHH
Confidence            1234456677888876665555544443    3444455666666666655555555555555555555544433  456


Q ss_pred             HHHHHHHh-cCCChHHHHHHHHHhHHHHhhhChhhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHHHHHhhhH
Q 009975          333 LPAIVELA-EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHIT  411 (521)
Q Consensus       333 ~~~l~~~~-~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~  411 (521)
                      ++.+.+++ ++.....+.+.++++..+++..+..  ....+..+..++.|....  .-+...++.+........-....+
T Consensus       393 m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pds--Ke~~L~~LCefIEDce~~--~i~~rILhlLG~EgP~a~~Pskyi  468 (865)
T KOG1078|consen  393 MNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDS--KERGLEHLCEFIEDCEFT--QIAVRILHLLGKEGPKAPNPSKYI  468 (865)
T ss_pred             HHHHHHHHHhccCchHHHHHHHHHHHHHHhCcch--hhHHHHHHHHHHHhccch--HHHHHHHHHHhccCCCCCCcchhh
Confidence            67776654 4566788888888888887754433  122333444444553322  222222322222110000112223


Q ss_pred             HHHHhhhcCcchHHHHHHHHHHHHhhcccChHHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHH
Q 009975          412 PQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLI  476 (521)
Q Consensus       412 ~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~  476 (521)
                      -.+.+..-=.|..+|.+|+.++..++  .+.+...+.+...+.+++.|.+..||.+|...+..+-
T Consensus       469 r~iyNRviLEn~ivRaaAv~alaKfg--~~~~~l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~  531 (865)
T KOG1078|consen  469 RFIYNRVILENAIVRAAAVSALAKFG--AQDVVLLPSILVLLKRCLNDSDDEVRDRATFYLKNLE  531 (865)
T ss_pred             HHHhhhhhhhhhhhHHHHHHHHHHHh--cCCCCccccHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence            33333333357889999999999998  4555567788888999999999999999999988876

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.17  E-value=9.7e-06  Score=81.22  Aligned_cols=418  Identities=13%  Similarity=0.118  Sum_probs=243.0

Q ss_pred             CchhHHHHHHHHHHHHHHhhcChhHHHHhHHHHHHHhh-cCC-CCcchhhh-hhhhhhh---cC-C--------CChHHH
Q 009975           31 VEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLA-AGE-WFTARVSA-CGLFHIA---YP-S--------APDILK   95 (521)
Q Consensus        31 ~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~p~i~~~~-~~~-~~~~r~~~-~~~~~~~---~~-~--------~~~~~~   95 (521)
                      ++|+..|..|...|..+-+.-       .+++.+.+.+ +++ ...+|.+| +.+-..+   +. +        .+++-+
T Consensus        15 d~d~~~R~~AE~~L~q~~K~p-------gFv~~lLqIi~~d~~~l~vrqaaaIYlKN~I~~~W~~~~~~g~~~~I~e~dk   87 (1010)
T KOG1991|consen   15 DSDAKERKAAEQQLNQLEKQP-------GFVSSLLQIIMDDGVPLPVRQAAAIYLKNKITKSWSSHEAPGRPFGIPEEDK   87 (1010)
T ss_pred             CCChHHHHHHHHHHHHhhcCC-------cHHHHHHHHHHccCCchhHHHHHHHHHHHHHHhcCCccCCCCCcCCCChHHH
Confidence            566999999999998877753       2333333333 333 44556554 3332222   21 1        334445


Q ss_pred             HHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcC--h-h--
Q 009975           96 TELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLE--P-Q--  170 (521)
Q Consensus        96 ~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~--~-~--  170 (521)
                      ..+..-+...+-.....+|..-..++..+...-- +..|+.+++.+..++++++...-..|+-++..+++...  . +  
T Consensus        88 ~~irenIl~~iv~~p~~iRvql~~~l~~Ii~~D~-p~~Wp~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k~ye~k~~eeR  166 (1010)
T KOG1991|consen   88 AVIRENILETIVQVPELIRVQLTACLNTIIKADY-PEQWPGLLDKIKNLLQSQDANHVYGALLCLYQLFKTYEWKKDEER  166 (1010)
T ss_pred             HHHHHHHHHHHHhCchHHHHHHHHHHHHHHhcCC-cccchhHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhhcccccc
Confidence            5566655554444467899888888888776533 36799999999999999999999999999999987653  1 1  


Q ss_pred             ----hhhhhhHHH----HHHhcCCCChH---HHHHHHHHHHHHHHH-hCCCccccchHHH----HHHhc----------C
Q 009975          171 ----DCVAHILPV----IVNFSQDKSWR---VRYMVANQLYELCEA-VGPEPTRMDLVPA----YVRLL----------R  224 (521)
Q Consensus       171 ----~~~~~l~~~----l~~~~~d~~~~---vR~~~~~~l~~i~~~-~~~~~~~~~l~~~----l~~~l----------~  224 (521)
                          ......+|.    +..++.+++..   ..+.+++.+...+.. ++.....++.+..    +...+          -
T Consensus       167 ~~l~~~v~~~fP~il~~~~~ll~~~s~~s~el~klIlKifks~~~~~LP~~L~~~~~f~~W~~l~l~i~~rpvP~E~l~~  246 (1010)
T KOG1991|consen  167 QPLGEAVEELFPDILQIFNGLLSQESYQSVELQKLILKIFKSLIYYELPLELSAPETFTSWMELFLSILNRPVPVEVLSL  246 (1010)
T ss_pred             ccHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhCCHHhhCchhHHHHHHHHHHHHcCCCChhcccC
Confidence                122234444    44455555433   333344443333321 2222222222222    22211          1


Q ss_pred             C-------ChHHHHHHHHHhHHHHHhhhCHH------------HHHHhhhH----HHHHhcc---C---CcHHHHHHHHH
Q 009975          225 D-------NEAEVRIAAAGKVTKFCRILNPE------------LAIQHILP----CVKELSS---D---SSQHVRSALAS  275 (521)
Q Consensus       225 d-------~~~~vr~~a~~~l~~l~~~~~~~------------~~~~~~~~----~l~~~~~---d---~~~~vr~~~~~  275 (521)
                      |       +-|.+++.|++.+.++.+..|..            .+...+.+    .+.+.+.   .   -+++|-..+..
T Consensus       247 d~e~R~~~~wwK~KKWa~~~L~Rlf~Ryg~~~~~~~~y~~Fa~~f~~n~~~~ile~~lk~l~~~~~~~yls~rvl~~~l~  326 (1010)
T KOG1991|consen  247 DPEDRSSWPWWKCKKWALHILNRLFERYGSPSLVVPEYKEFAQMFLKNFAQGILEVFLKILEQWRQQLYLSDRVLYYLLN  326 (1010)
T ss_pred             ChhhcccccchhhHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHH
Confidence            2       23568899999999988877531            11111222    1111111   1   12344444443


Q ss_pred             HHHccccccChHHHHHhHHHHHHHhh----------c---------CCChHHH-------------HHHHHHHHHhhhhh
Q 009975          276 VIMGMAPLLGKDATIEQLLPIFLSLL----------K---------DEFPDVR-------------LNIISKLDQVNQVI  323 (521)
Q Consensus       276 ~l~~i~~~~~~~~~~~~l~~~l~~~l----------~---------d~~~~vr-------------~~a~~~l~~~~~~~  323 (521)
                      .+.+..   ....+...+-|.+..++          +         |+.+.+|             .+|...+..++..-
T Consensus       327 fl~~~V---s~~~twkll~PHl~~ii~~vIFPlmc~~d~deelwe~DP~EYiR~~~Di~ed~~sp~~Aa~~~l~~~~~KR  403 (1010)
T KOG1991|consen  327 FLEQCV---SHASTWKLLKPHLQVIIQDVIFPLMCFNDEDEELWEEDPYEYIRKKFDIFEDGYSPDTAALDFLTTLVSKR  403 (1010)
T ss_pred             HHHHhc---cHHHHHHHhhhHHHHHHHHhhhhhcCCCcccHHHHhcCHHHHHHhcCchhcccCCCcHHHHHHHHHHHHhc
Confidence            333322   22222223333322221          2         2333444             45666677777777


Q ss_pred             chhhHhhhHHHHHHHHhc--------CCChHHHHHHHHHhHHHHhhhChh-hh----HHHHHHHHHHHcCCCcHHHHHHH
Q 009975          324 GIDLLSQSLLPAIVELAE--------DRHWRVRLAIIEYIPLLASQLGVG-FF----DDKLGALCMQWLQDKVYSIRDAA  390 (521)
Q Consensus       324 ~~~~~~~~~~~~l~~~~~--------~~~~~vr~~~~~~l~~l~~~~~~~-~~----~~~l~~~l~~~l~d~~~~vr~~a  390 (521)
                      |++.+ +.+++.+.+.++        ..+++-+..++..++.++..+.+. .+    ...+.+.++-.++++.--.|..|
T Consensus       404 ~ke~l-~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrara  482 (1010)
T KOG1991|consen  404 GKETL-PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARA  482 (1010)
T ss_pred             chhhh-hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHH
Confidence            77766 677777777654        246777888999999998776543 22    23455666677789999999999


Q ss_pred             HHHHHHHH-HHhCHHHHHhhhHHHHHhhhc-CcchHHHHHHHHHHHHhhcccChH--HH---hhcHHHHHHhhcCCC
Q 009975          391 ANNLKRLA-EEFGPEWAMQHITPQVLEMIN-NPHYLYRMTILRAISLLAPVMGSE--IT---CSRLLPVVINASKDR  460 (521)
Q Consensus       391 ~~~l~~l~-~~~~~~~~~~~l~~~l~~~l~-~~~~~~r~~a~~~l~~l~~~~~~~--~~---~~~il~~l~~~l~d~  460 (521)
                      +..++.++ ..+..+.....++....+.+. |+...+|..|+-++..+.......  .+   .+.++.-++++.++.
T Consensus       483 c~vl~~~~~~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~  559 (1010)
T KOG1991|consen  483 CWVLSQFSSIDFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEV  559 (1010)
T ss_pred             HHHHHHHHhccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhc
Confidence            99999998 445544444556666666655 888999999999999998754422  12   334455555555554

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.16  E-value=6.5e-06  Score=79.42  Aligned_cols=219  Identities=15%  Similarity=0.124  Sum_probs=144.6

Q ss_pred             hhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcChhhhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCc
Q 009975          131 AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP  210 (521)
Q Consensus       131 ~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~  210 (521)
                      ......+-+-+..+++...+.+|+.|+-++..+....++  ....-+|-+.+-++|+++.|..+|+..+.++++.-++..
T Consensus       139 pdLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPe--Alr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPkny  216 (877)
T KOG1059|consen  139 PDLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPE--ALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNY  216 (877)
T ss_pred             chhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhH--hHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCccc
Confidence            445667778888889999999999999999888877644  344567778888999999999999999999988655543


Q ss_pred             cccchHHHHHHhcC--CChHHHHHHHHHhHHHHHhhhCHHHHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccc---cC
Q 009975          211 TRMDLVPAYVRLLR--DNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPL---LG  285 (521)
Q Consensus       211 ~~~~l~~~l~~~l~--d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~---~~  285 (521)
                      .  .+-|.|.+++.  +++|. -.-.++.++.+...-+  ..-..++|.+.+++...+..  ....+|+..+...   .|
T Consensus       217 L--~LAP~ffkllttSsNNWm-LIKiiKLF~aLtplEP--RLgKKLieplt~li~sT~Am--SLlYECvNTVVa~s~s~g  289 (877)
T KOG1059|consen  217 L--QLAPLFYKLLVTSSNNWV-LIKLLKLFAALTPLEP--RLGKKLIEPITELMESTVAM--SLLYECVNTVVAVSMSSG  289 (877)
T ss_pred             c--cccHHHHHHHhccCCCee-hHHHHHHHhhccccCc--hhhhhhhhHHHHHHHhhHHH--HHHHHHHHHheeehhccC
Confidence            2  57788888764  34454 3334444444433212  12355777777777654431  2222333322221   12


Q ss_pred             --h-HHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHh
Q 009975          286 --K-DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS  360 (521)
Q Consensus       286 --~-~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~  360 (521)
                        + .....-.+.-+..++.|+++..+.-.+-+++.+++.-... + ......+.+.+.|.+..+|..++..+..++.
T Consensus       290 ~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~-V-qa~kdlIlrcL~DkD~SIRlrALdLl~gmVs  365 (877)
T KOG1059|consen  290 MSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKA-V-QAHKDLILRCLDDKDESIRLRALDLLYGMVS  365 (877)
T ss_pred             CCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHH-H-HHhHHHHHHHhccCCchhHHHHHHHHHHHhh
Confidence              1 2223344556667788999999999998888887753321 1 4556677788889999999888887766653

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=99.14  E-value=4.4e-09  Score=93.04  Aligned_cols=188  Identities=19%  Similarity=0.179  Sum_probs=128.2

Q ss_pred             hHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchhhHhh-------hHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhCh
Q 009975          292 QLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQ-------SLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV  364 (521)
Q Consensus       292 ~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~  364 (521)
                      .+...+.+.-.+.+++.|..++..+..++..-.+....+       .+++.+...+.|....+-..++.++..++..+|.
T Consensus         7 ~~~~~l~~~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~   86 (228)
T PF12348_consen    7 EILAALEKKESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGS   86 (228)
T ss_dssp             GS-TTHHHHHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGG
T ss_pred             HHHHHHhccCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhH
Confidence            344444444466778888888888877766441111112       2234444556677777888899999999999887


Q ss_pred             h--hhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHHHHHhhh-HHHHHhhhcCcchHHHHHHHHHHHHhhcccC
Q 009975          365 G--FFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHI-TPQVLEMINNPHYLYRMTILRAISLLAPVMG  441 (521)
Q Consensus       365 ~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l-~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~  441 (521)
                      .  .+.+.++|.++..+.|.+..+|.+|..++..++...+   +...+ .+.+....+++++.+|..++.++..+....+
T Consensus        87 ~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~---~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~  163 (228)
T PF12348_consen   87 HFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCS---YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWG  163 (228)
T ss_dssp             GGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS----H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT--
T ss_pred             hHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC---cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcc
Confidence            5  3567789999999999999999999999999998776   12234 7777888999999999999999999998877


Q ss_pred             --hH-----HHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchH
Q 009975          442 --SE-----ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS  482 (521)
Q Consensus       442 --~~-----~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~  482 (521)
                        ..     .+.+.+.+.+..++.|+++.||..|-+++..+...+|..
T Consensus       164 ~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~  211 (228)
T PF12348_consen  164 SDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPER  211 (228)
T ss_dssp             ---GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HH
T ss_pred             chHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHh
Confidence              11     123678999999999999999999999999998887654

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.10  E-value=6.6e-08  Score=93.88  Aligned_cols=431  Identities=14%  Similarity=0.115  Sum_probs=221.4

Q ss_pred             HHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHHHhHHHHHHHhhcCCCCcchhhhhhhhhhhcCCCChH-HHHHHHHHH
Q 009975           24 PLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI-LKTELRSIY  102 (521)
Q Consensus        24 ~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~p~i~~~~~~~~~~~r~~~~~~~~~~~~~~~~~-~~~~l~~~l  102 (521)
                      .+.+=+.++++.+|..|++.++.+-    .+.+.+++..-+.+..+++...+|..+......++...++. ....+.+.+
T Consensus        90 t~~kD~~d~np~iR~lAlrtm~~l~----v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~~gl~~~L  165 (734)
T KOG1061|consen   90 TFLKDCEDPNPLIRALALRTMGCLR----VDKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVEDSGLVDAL  165 (734)
T ss_pred             hhhccCCCCCHHHHHHHhhceeeEe----ehHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhccccchhHHH
Confidence            3334445566666666665544321    12233333333334444444455544444433433222222 223455555


Q ss_pred             HHhcCCCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcChhh-hhhhhHHHHH
Q 009975          103 TQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQD-CVAHILPVIV  181 (521)
Q Consensus       103 ~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~-~~~~l~~~l~  181 (521)
                      ..++.|.+|.|-..|..+|..+.+.-..........+++..++..-++-.-..-+..+..++...+++. ....+...+.
T Consensus       166 ~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~~ea~~i~~r~~  245 (734)
T KOG1061|consen  166 KDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDSREAEDICERLT  245 (734)
T ss_pred             HHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCchhHHHHHHHhh
Confidence            566666666666666666666655433211111111111222211111112223344455555544432 2233445555


Q ss_pred             HhcCCCChHHHHHHHHHHHHHHHHhCC--CccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhhhHHHH
Q 009975          182 NFSQDKSWRVRYMVANQLYELCEAVGP--EPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVK  259 (521)
Q Consensus       182 ~~~~d~~~~vR~~~~~~l~~i~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~  259 (521)
                      ..+++.+..|-..+.+.+-.....+..  +.....+-|.+..++..+. ++...++..+..+....+. .+...+.-++.
T Consensus       246 p~Lqh~n~avvlsavKv~l~~~~~~~~~~~~~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil~~~p~-~~~~~~~~Ff~  323 (734)
T KOG1061|consen  246 PRLQHANSAVVLSAVKVILQLVKYLKQVNELLFKKVAPPLVTLLSSES-EIQYVALRNINLILQKRPE-ILKVEIKVFFC  323 (734)
T ss_pred             hhhccCCcceEeehHHHHHHHHHHHHHHHHHHHHHhcccceeeecccc-hhhHHHHhhHHHHHHhChH-HHHhHhHeeee
Confidence            555555555555555555544443332  1112334444444444444 7777777777776665443 32222222221


Q ss_pred             HhccCCcHHHHHHHHHHHHccccccChHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHH
Q 009975          260 ELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVEL  339 (521)
Q Consensus       260 ~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~  339 (521)
                      +. .|+- .|+..=.+++..++.   .. ...++++-+.....+-+.+.-+.++.+++.++......   +..++.+.++
T Consensus       324 ky-nDPi-YvK~eKleil~~la~---~~-nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~---~~cv~~lLel  394 (734)
T KOG1061|consen  324 KY-NDPI-YVKLEKLEILIELAN---DA-NLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS---NDCVSILLEL  394 (734)
T ss_pred             ec-CCch-hhHHHHHHHHHHHhh---Hh-HHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh---hhhHHHHHHH
Confidence            11 2222 344444555554441   11 12346666777777888888889999999988765543   6688888888


Q ss_pred             hcCCChHHHHHHHHHhHHHHhhhChhhhHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhh
Q 009975          340 AEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQD-KVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMI  418 (521)
Q Consensus       340 ~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l  418 (521)
                      ++-+..-+...++..+..+...++...  +.+++.+-..+.. .+++.|.+.+..+|.....+..   ...++..+.+..
T Consensus       395 l~~~~~yvvqE~~vvi~dilRkyP~~~--~~vv~~l~~~~~sl~epeak~amiWilg~y~~~i~~---a~elL~~f~en~  469 (734)
T KOG1061|consen  395 LETKVDYVVQEAIVVIRDILRKYPNKY--ESVVAILCENLDSLQEPEAKAALIWILGEYAERIEN---ALELLESFLENF  469 (734)
T ss_pred             HhhcccceeeehhHHHHhhhhcCCCch--hhhhhhhcccccccCChHHHHHHHHHHhhhhhccCc---HHHHHHHHHhhc
Confidence            774433333344445555555555432  4455555444433 5677888888888888776643   245666677777


Q ss_pred             cCcchHHHHHHHHHHHHhhcccChHHHhhcHHHHHHh-hcCCC-CchHHHHHHHHHHHHH
Q 009975          419 NNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVIN-ASKDR-VPNIKFNVAKVLQSLI  476 (521)
Q Consensus       419 ~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~il~~l~~-~l~d~-~~~VR~~a~~~l~~~~  476 (521)
                      .|....++...+.+.-+++-..+.+  .+..+..++. +..|. ++++|..++--...+.
T Consensus       470 ~dE~~~Vql~LLta~ik~Fl~~p~~--tq~~l~~vL~~~~~d~~~~dlrDr~l~Y~RlLs  527 (734)
T KOG1061|consen  470 KDETAEVQLELLTAAIKLFLKKPTE--TQELLQGVLPLATADTDNPDLRDRGLIYWRLLS  527 (734)
T ss_pred             ccchHHHHHHHHHHHHHHHhcCCcc--HHHHHHHHHhhhhccccChhhhhhHHHHHHHhh
Confidence            7777777776666665555433321  2334444444 33443 6689998887665554

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.10  E-value=8.6e-07  Score=85.22  Aligned_cols=400  Identities=14%  Similarity=0.084  Sum_probs=204.0

Q ss_pred             HhHHHHHHHhhcCCCCcchhhhhhhhhhhcCCCChHHHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCchhhHHHH
Q 009975           58 DWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDI  137 (521)
Q Consensus        58 ~~l~p~i~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l  137 (521)
                      ..+-+-+..++....+.+|..++.++..++.+-|+. ...-+|-+.+-+.|+||.|..+|+..+..+++..++...  .+
T Consensus       143 RDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeA-lr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL--~L  219 (877)
T KOG1059|consen  143 RDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEA-LRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYL--QL  219 (877)
T ss_pred             HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHh-HhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccc--cc
Confidence            456666666666666667777766666666555554 445566666667788888888888888888777664332  34


Q ss_pred             HHHHHHhhcC-CChhHHHHHHHHHHHHhhhcChhhhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHH-hCCC--ccc-
Q 009975          138 MSIFEDLTQD-DQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEA-VGPE--PTR-  212 (521)
Q Consensus       138 ~~~l~~l~~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~-~~~~--~~~-  212 (521)
                      -|.+.+++.+ .+-.+-...++.++.+...-+  ...+.+++.+..++.+.+.  ..-..+++..++.. +...  ... 
T Consensus       220 AP~ffkllttSsNNWmLIKiiKLF~aLtplEP--RLgKKLieplt~li~sT~A--mSLlYECvNTVVa~s~s~g~~d~~a  295 (877)
T KOG1059|consen  220 APLFYKLLVTSSNNWVLIKLLKLFAALTPLEP--RLGKKLIEPITELMESTVA--MSLLYECVNTVVAVSMSSGMSDHSA  295 (877)
T ss_pred             cHHHHHHHhccCCCeehHHHHHHHhhccccCc--hhhhhhhhHHHHHHHhhHH--HHHHHHHHHHheeehhccCCCCcHH
Confidence            5555555543 233344445566665554421  2344566666666655442  12223333333221 1111  111 


Q ss_pred             --cchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccChHHHH
Q 009975          213 --MDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATI  290 (521)
Q Consensus       213 --~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~  290 (521)
                        .--+.-+..++.|.+++.+..++-+++.++...+...  ..--..+.+++.|.+..+|.-++..+..+.   .++...
T Consensus       296 siqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~V--qa~kdlIlrcL~DkD~SIRlrALdLl~gmV---skkNl~  370 (877)
T KOG1059|consen  296 SIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAV--QAHKDLILRCLDDKDESIRLRALDLLYGMV---SKKNLM  370 (877)
T ss_pred             HHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHH--HHhHHHHHHHhccCCchhHHHHHHHHHHHh---hhhhHH
Confidence              1223334456788889999999999998888655432  233455677788999999988888887775   233322


Q ss_pred             HhHHHHHHHhhcCCC-hHHHHHHHHHHHHhhhhhchhhH--hhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChhhh
Q 009975          291 EQLLPIFLSLLKDEF-PDVRLNIISKLDQVNQVIGIDLL--SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF  367 (521)
Q Consensus       291 ~~l~~~l~~~l~d~~-~~vr~~a~~~l~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~  367 (521)
                       .++..++..+.+.+ ...|...+..+-.+|..-....+  ++..+..+.++..=+..+.-.-+.+.+..++-.+..  .
T Consensus       371 -eIVk~LM~~~~~ae~t~yrdell~~II~iCS~snY~~ItdFEWYlsVlveLa~l~~~~~G~~I~eQi~Dv~iRV~~--i  447 (877)
T KOG1059|consen  371 -EIVKTLMKHVEKAEGTNYRDELLTRIISICSQSNYQYITDFEWYLSVLVELARLEGTRHGSLIAEQIIDVAIRVPS--I  447 (877)
T ss_pred             -HHHHHHHHHHHhccchhHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHheechh--h
Confidence             33444444333333 35555555544444432211100  144455555554333322222222222222211111  1


Q ss_pred             HHHHHHHHHHHcCCC-----------cHHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcC-cchHHHHHHHHHHHH
Q 009975          368 DDKLGALCMQWLQDK-----------VYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINN-PHYLYRMTILRAISL  435 (521)
Q Consensus       368 ~~~l~~~l~~~l~d~-----------~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~-~~~~~r~~a~~~l~~  435 (521)
                      .+..+..+..++.|+           -.+|-.+|+.++|.+.......   ..++..+.+--.+ -...+....+..+..
T Consensus       448 R~fsV~~m~~Ll~~~~~~~s~q~n~~l~eVL~AaaWi~GEyse~ven~---~~~leamlrpr~~~lp~~iq~vyvqni~K  524 (877)
T KOG1059|consen  448 RPFSVSQMSALLDDPLLAGSAQINSQLCEVLYAAAWILGEYSEFVENP---NDTLEAMLRPRSDLLPGHIQAVYVQNIVK  524 (877)
T ss_pred             hHhHHHHHHHHHhchhhccchhhccchhHHHHHHHHHHHHHHHHhhCH---HHHHHHHhcCccccCchHHHHHHHHHHHH
Confidence            111222222222222           4567788999999988765432   2233333221111 012333333333333


Q ss_pred             h----hcccCh-------HHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHH
Q 009975          436 L----APVMGS-------EITCSRLLPVVINASKDRVPNIKFNVAKVLQSL  475 (521)
Q Consensus       436 l----~~~~~~-------~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~  475 (521)
                      +    +.....       ....+.++..+-+.....+-+|+..|-.++..+
T Consensus       525 lfc~~~~~~ee~~~~e~~~sL~~~i~~~l~qf~~s~d~EvQERA~~~~~li  575 (877)
T KOG1059|consen  525 LFCSWCSQFEETKDFEGIVSLVNLILSFLEQFSGSSDLEVQERASEVLELI  575 (877)
T ss_pred             HHHHHHhhcCcccchhHHHHHHHHHHHHhhcccCccchhHHHHHHHHHHHH
Confidence            3    221111       112244555666666667778888866655544

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.08  E-value=1.2e-05  Score=80.50  Aligned_cols=407  Identities=17%  Similarity=0.141  Sum_probs=238.9

Q ss_pred             HHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHH-hhcCCCh-hHHHHHHHHHHHHh-hhcChh---
Q 009975           97 ELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFED-LTQDDQD-SVRLLAVEGCAALG-KLLEPQ---  170 (521)
Q Consensus        97 ~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~-l~~d~~~-~vr~~a~~~l~~l~-~~~~~~---  170 (521)
                      .+...+.. +-|.+|.+|++|-..|..+-+.       +.+++.+.+ .+.|+.+ .||.+|.--+.+.. +..++.   
T Consensus         5 ~l~~~~~~-T~d~d~~~R~~AE~~L~q~~K~-------pgFv~~lLqIi~~d~~~l~vrqaaaIYlKN~I~~~W~~~~~~   76 (1010)
T KOG1991|consen    5 SLLQIFRA-TIDSDAKERKAAEQQLNQLEKQ-------PGFVSSLLQIIMDDGVPLPVRQAAAIYLKNKITKSWSSHEAP   76 (1010)
T ss_pred             HHHHHHHH-hcCCChHHHHHHHHHHHHhhcC-------CcHHHHHHHHHHccCCchhHHHHHHHHHHHHHHhcCCccCCC
Confidence            44444444 4566799999999999877543       223333333 3444443 67887766666553 333221   


Q ss_pred             --------hhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHH
Q 009975          171 --------DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFC  242 (521)
Q Consensus       171 --------~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~  242 (521)
                              +.+..+..-+...+-....-+|-....++..|...--+ ..++.+++....+++.++...-..++-++..+.
T Consensus        77 g~~~~I~e~dk~~irenIl~~iv~~p~~iRvql~~~l~~Ii~~D~p-~~Wp~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~  155 (1010)
T KOG1991|consen   77 GRPFGIPEEDKAVIRENILETIVQVPELIRVQLTACLNTIIKADYP-EQWPGLLDKIKNLLQSQDANHVYGALLCLYQLF  155 (1010)
T ss_pred             CCcCCCChHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhcCCc-ccchhHHHHHHHHhcCcchhhHHHHHHHHHHHH
Confidence                    12223444444444444556788777777666643222 346889999999999999888889999999888


Q ss_pred             hhhC-----H--------HHHHHhhhHHHHHhccCCcHHH---HHHHHHHHHcccc-ccCh----HHHHHhHHHHHHHhh
Q 009975          243 RILN-----P--------ELAIQHILPCVKELSSDSSQHV---RSALASVIMGMAP-LLGK----DATIEQLLPIFLSLL  301 (521)
Q Consensus       243 ~~~~-----~--------~~~~~~~~~~l~~~~~d~~~~v---r~~~~~~l~~i~~-~~~~----~~~~~~l~~~l~~~l  301 (521)
                      +...     .        +.+.+.+...+..++.+.+...   ....++.+...+. .++.    ......++..+...+
T Consensus       156 k~ye~k~~eeR~~l~~~v~~~fP~il~~~~~ll~~~s~~s~el~klIlKifks~~~~~LP~~L~~~~~f~~W~~l~l~i~  235 (1010)
T KOG1991|consen  156 KTYEWKKDEERQPLGEAVEELFPDILQIFNGLLSQESYQSVELQKLILKIFKSLIYYELPLELSAPETFTSWMELFLSIL  235 (1010)
T ss_pred             HHHhhccccccccHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhCCHHhhCchhHHHHHHHHHHHH
Confidence            8763     0        1222334444455566655432   2223332222221 1222    223445566666666


Q ss_pred             cCC--------Ch---------HHHHHHHHHHHHhhhhhchh------------hHhh----hHHHHHHHHhc---CC--
Q 009975          302 KDE--------FP---------DVRLNIISKLDQVNQVIGID------------LLSQ----SLLPAIVELAE---DR--  343 (521)
Q Consensus       302 ~d~--------~~---------~vr~~a~~~l~~~~~~~~~~------------~~~~----~~~~~l~~~~~---~~--  343 (521)
                      +-+        ++         .+++.|+..+.++.+..|..            .+..    .++..+.+.+.   ..  
T Consensus       236 ~rpvP~E~l~~d~e~R~~~~wwK~KKWa~~~L~Rlf~Ryg~~~~~~~~y~~Fa~~f~~n~~~~ile~~lk~l~~~~~~~y  315 (1010)
T KOG1991|consen  236 NRPVPVEVLSLDPEDRSSWPWWKCKKWALHILNRLFERYGSPSLVVPEYKEFAQMFLKNFAQGILEVFLKILEQWRQQLY  315 (1010)
T ss_pred             cCCCChhcccCChhhcccccchhhHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            532        22         35778888888887766521            1112    22222222221   12  


Q ss_pred             -ChHHHHHHHHHhHHHHhhhChhhhHHHHHHHHHHH--------c-----------CCCcHHHHH-------------HH
Q 009975          344 -HWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQW--------L-----------QDKVYSIRD-------------AA  390 (521)
Q Consensus       344 -~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~--------l-----------~d~~~~vr~-------------~a  390 (521)
                       .+++-..++..   +...+....+...+-|.+...        +           .|+..-+|+             +|
T Consensus       316 ls~rvl~~~l~f---l~~~Vs~~~twkll~PHl~~ii~~vIFPlmc~~d~deelwe~DP~EYiR~~~Di~ed~~sp~~Aa  392 (1010)
T KOG1991|consen  316 LSDRVLYYLLNF---LEQCVSHASTWKLLKPHLQVIIQDVIFPLMCFNDEDEELWEEDPYEYIRKKFDIFEDGYSPDTAA  392 (1010)
T ss_pred             CCHHHHHHHHHH---HHHhccHHHHHHHhhhHHHHHHHHhhhhhcCCCcccHHHHhcCHHHHHHhcCchhcccCCCcHHH
Confidence             22333333333   333333332222232322111        1           244444553             46


Q ss_pred             HHHHHHHHHHhCHHHHHhhhHHHHHhhhc--------CcchHHHHHHHHHHHHhhcccChH-----HHhhcHHHHHHhhc
Q 009975          391 ANNLKRLAEEFGPEWAMQHITPQVLEMIN--------NPHYLYRMTILRAISLLAPVMGSE-----ITCSRLLPVVINAS  457 (521)
Q Consensus       391 ~~~l~~l~~~~~~~~~~~~l~~~l~~~l~--------~~~~~~r~~a~~~l~~l~~~~~~~-----~~~~~il~~l~~~l  457 (521)
                      ...+-.++..-|.+.+ ..+++.+.+.++        ..+++.+..|+.++|.++..+..+     ....-+.++++..+
T Consensus       393 ~~~l~~~~~KR~ke~l-~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f  471 (1010)
T KOG1991|consen  393 LDFLTTLVSKRGKETL-PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEF  471 (1010)
T ss_pred             HHHHHHHHHhcchhhh-hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhh
Confidence            6666666666555543 446666666554        246888999999999999765542     23345678888899


Q ss_pred             CCCCchHHHHHHHHHHHHH-hhhchHHHHhhHHHHHHHh-cCCCCccHHHHHHHHHHHHHH
Q 009975          458 KDRVPNIKFNVAKVLQSLI-PIVDQSMVEKTIRPCLVEL-TEDPDVDVRFFATQAIQSIDH  516 (521)
Q Consensus       458 ~d~~~~VR~~a~~~l~~~~-~~~~~~~~~~~~~~~l~~l-~~D~~~~vr~~a~~al~~l~~  516 (521)
                      +++.-..|..||+.++.++ ..+..+.....++....++ .+|.+--||-.|+-|++.+..
T Consensus       472 ~s~~g~Lrarac~vl~~~~~~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~  532 (1010)
T KOG1991|consen  472 QSPYGYLRARACWVLSQFSSIDFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFIS  532 (1010)
T ss_pred             cCchhHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHh
Confidence            9999999999999999998 4566555566777777765 459999999999999998754

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.08  E-value=8.2e-07  Score=86.25  Aligned_cols=460  Identities=14%  Similarity=0.104  Sum_probs=262.4

Q ss_pred             hhhHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHHHhHHHHHHHh---hcCCCCcchhhhhhhhhhhcCCCChHHHHH
Q 009975           21 LLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRL---AAGEWFTARVSACGLFHIAYPSAPDILKTE   97 (521)
Q Consensus        21 l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~p~i~~~---~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~   97 (521)
                      ++-.+.++..+.|...|+..--+++++...-.      +.+-....+   .+......|..+++.+-.+.   +......
T Consensus        65 ~ff~~tKlfQskd~~LRr~vYl~Ikels~ise------dviivtsslmkD~t~~~d~yr~~AiR~L~~I~---d~~m~~~  135 (865)
T KOG1078|consen   65 LFFAITKLFQSKDVSLRRMVYLAIKELSKISE------DVIIVTSSLMKDMTGKEDLYRAAAIRALCSII---DGTMLQA  135 (865)
T ss_pred             HHHHHHHHHhhcCHHHHHHHHHHHhhccccch------hhhhhhHHHHhhccCCCcchhHHHHHHHHhhc---CcchhHH
Confidence            44445566666777777776666665554322      222222222   22334455666665554443   3334556


Q ss_pred             HHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcChhhhhhhhH
Q 009975           98 LRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHIL  177 (521)
Q Consensus        98 l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~  177 (521)
                      +-..+.+..-|+++.++.+|.-.=..+....  ................+.+..++.-|...+..+-++-     .-.+-
T Consensus       136 iery~kqaivd~~~avSsaalvss~hll~~~--~~~vkrw~neiqea~~s~~~m~QyHalglLyqirk~d-----rla~s  208 (865)
T KOG1078|consen  136 IERYMKQAIVDKNPAVSSAALVSSYHLLPIS--FDVVKRWANEVQEAVNSDNIMVQYHALGLLYQIRKND-----RLAVS  208 (865)
T ss_pred             HHHHHHhHeeccccccchHHHHHHhhhhccc--HHHHHHHHHhhhhccCcHHHHHHHHHHHHHHHHHhhh-----HHHHH
Confidence            6667777777888888776653322222211  1111222222233334444456666666666654431     11122


Q ss_pred             HHHHHhcCC--CChHHHHHHHHHHHHHHHHhCCC-ccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhh
Q 009975          178 PVIVNFSQD--KSWRVRYMVANQLYELCEAVGPE-PTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHI  254 (521)
Q Consensus       178 ~~l~~~~~d--~~~~vR~~~~~~l~~i~~~~~~~-~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~  254 (521)
                      .++..+...  .++..+....+.   .++.+..+ .....+.+.+..++......|-..|..++..+....+.+-  ...
T Consensus       209 klv~~~~~~~~~~~~A~~~lir~---~~~~l~~~~~~~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~l--~pa  283 (865)
T KOG1078|consen  209 KLVQKFTRGSLKSPLAVCMLIRI---ASELLKENQQADSPLFPFLESCLRHKSEMVIYEAARAIVSLPNTNSREL--APA  283 (865)
T ss_pred             HHHHHHccccccchhHHHHHHHH---HHHHhhhcccchhhHHHHHHHHHhchhHHHHHHHHHHHhhccccCHhhc--chH
Confidence            222222221  222222222221   22222222 2235688889999998888888888888877665444321  224


Q ss_pred             hHHHHHhccCCcHHHHHHHHHHHHccccccChHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchhhHhhhHHH
Q 009975          255 LPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLP  334 (521)
Q Consensus       255 ~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~  334 (521)
                      +..+.-+++.+....|.++...+.+++...+...  ...-+-+..+..|.+-.+-.-|...+-+-......    +.++.
T Consensus       284 vs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v--~~cN~elE~lItd~NrsIat~AITtLLKTG~e~sv----~rLm~  357 (865)
T KOG1078|consen  284 VSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAV--TVCNLDLESLITDSNRSIATLAITTLLKTGTESSV----DRLMK  357 (865)
T ss_pred             HHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccc--cccchhHHhhhcccccchhHHHHHHHHHhcchhHH----HHHHH
Confidence            5666777888999999999999999886665432  12233455667777766555555544443332222    44444


Q ss_pred             HHHHHhcCCChHHHHHHHHHhHHHHhhhChhhhHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHHHHhCHHHHHhhhHHH
Q 009975          335 AIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQ-DKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQ  413 (521)
Q Consensus       335 ~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~  413 (521)
                      .+..+..|-+...+..+++++..++..++..  ...+++.+...|. +...+-+.+...++-.++.....  ..+..+..
T Consensus       358 qI~~fv~disDeFKivvvdai~sLc~~fp~k--~~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pd--sKe~~L~~  433 (865)
T KOG1078|consen  358 QISSFVSDISDEFKIVVVDAIRSLCLKFPRK--HTVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPD--SKERGLEH  433 (865)
T ss_pred             HHHHHHHhccccceEEeHHHHHHHHhhccHH--HHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcc--hhhHHHHH
Confidence            4445554444445555566666666655543  2234555555544 45667777888887777654322  24556667


Q ss_pred             HHhhhcCcchHHHHHHHHHHHHhhcccChHHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchHHHHhhHHHHHH
Q 009975          414 VLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLV  493 (521)
Q Consensus       414 l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~~~~~~~~l~  493 (521)
                      |.+++.|..  .+.-+...+..++............+.++....-=.+..||.+|..++.++.  .+.....+.+.-.+.
T Consensus       434 LCefIEDce--~~~i~~rILhlLG~EgP~a~~Pskyir~iyNRviLEn~ivRaaAv~alaKfg--~~~~~l~~sI~vllk  509 (865)
T KOG1078|consen  434 LCEFIEDCE--FTQIAVRILHLLGKEGPKAPNPSKYIRFIYNRVILENAIVRAAAVSALAKFG--AQDVVLLPSILVLLK  509 (865)
T ss_pred             HHHHHHhcc--chHHHHHHHHHHhccCCCCCCcchhhHHHhhhhhhhhhhhHHHHHHHHHHHh--cCCCCccccHHHHHH
Confidence            777766643  3345566666666544433223444455555444457889999999999988  455556678888999


Q ss_pred             HhcCCCCccHHHHHHHHHHHHH
Q 009975          494 ELTEDPDVDVRFFATQAIQSID  515 (521)
Q Consensus       494 ~l~~D~~~~vr~~a~~al~~l~  515 (521)
                      +++.|+|.+||..|.-++..+.
T Consensus       510 Rc~~D~DdevRdrAtf~l~~l~  531 (865)
T KOG1078|consen  510 RCLNDSDDEVRDRATFYLKNLE  531 (865)
T ss_pred             HHhcCchHHHHHHHHHHHHHhh
Confidence            9999999999999999988776

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=99.06  E-value=4.5e-09  Score=100.83  Aligned_cols=254  Identities=13%  Similarity=0.189  Sum_probs=204.1

Q ss_pred             CChHHHHHHHHHhHHHHHhhhCHHHHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccChHHHHHhHHHHHHHhhcCC
Q 009975          225 DNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDE  304 (521)
Q Consensus       225 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~  304 (521)
                      -.+.+-|..-...|......++.+.....++|.+...+.-.+ . -...+..+-.+...+....+...++|.+.++++..
T Consensus       265 lks~~eK~~Ff~~L~~~l~~~pe~i~~~kvlp~Ll~~~~~g~-a-~~~~ltpl~k~~k~ld~~eyq~~i~p~l~kLF~~~  342 (690)
T KOG1243|consen  265 LKSVEEKQKFFSGLIDRLDNFPEEIIASKVLPILLAALEFGD-A-ASDFLTPLFKLGKDLDEEEYQVRIIPVLLKLFKSP  342 (690)
T ss_pred             cCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccc-c-chhhhhHHHHhhhhccccccccchhhhHHHHhcCc
Confidence            334455666666666666677777777788888876654322 0 11122222333444444556778999999999999


Q ss_pred             ChHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChhhhHHHHHHHHHHHcCCCcH
Q 009975          305 FPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVY  384 (521)
Q Consensus       305 ~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~  384 (521)
                      +..+|...+..+..+...+.++.+.+.++|.+..-+.|.+..+|...+.++..++..+++......++..+-.+-.|.+.
T Consensus       343 Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~Ln~Ellr~~ar~q~d~~~  422 (690)
T KOG1243|consen  343 DRQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRNLNGELLRYLARLQPDEHG  422 (690)
T ss_pred             chHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhhhcHHHHHHHHhhCccccC
Confidence            99999999999999999999999989999999999999999999999999999999999987788888888888889999


Q ss_pred             HHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChHHHhhcHHHHHHhhcCCCCchH
Q 009975          385 SIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNI  464 (521)
Q Consensus       385 ~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~V  464 (521)
                      .+|....-|++.+...+........+...+...+.|+-..-|.+++..+....+.+....+...++|.+..+..|+...|
T Consensus       423 ~irtntticlgki~~~l~~~~R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~~~~va~kIlp~l~pl~vd~e~~v  502 (690)
T KOG1243|consen  423 GIRTNTTICLGKIAPHLAASVRKRVLASAFTRALKDPFVPARKAGVLALAATQEYFDQSEVANKILPSLVPLTVDPEKTV  502 (690)
T ss_pred             cccccceeeecccccccchhhhccccchhhhhhhcCCCCCchhhhhHHHhhcccccchhhhhhhccccccccccCcccch
Confidence            99999999999988776544333444555555788888889999999999999988888888999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhc
Q 009975          465 KFNVAKVLQSLIPIVD  480 (521)
Q Consensus       465 R~~a~~~l~~~~~~~~  480 (521)
                      |..|..++........
T Consensus       503 r~~a~~~i~~fl~kl~  518 (690)
T KOG1243|consen  503 RDTAEKAIRQFLEKLE  518 (690)
T ss_pred             hhHHHHHHHHHHhhhh
Confidence            9999999988776543

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=99.04  E-value=4.8e-06  Score=86.73  Aligned_cols=406  Identities=15%  Similarity=0.149  Sum_probs=227.5

Q ss_pred             HHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcChhhhhhh
Q 009975           96 TELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAH  175 (521)
Q Consensus        96 ~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~  175 (521)
                      +..+..|...+..+...+|..|.++|..+++.-+.-...+.+..-+..-+.|....||.+|++.+|...-..  ++...+
T Consensus       815 D~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~--~e~~~q  892 (1692)
T KOG1020|consen  815 DPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSI--PELIFQ  892 (1692)
T ss_pred             HHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhcc--HHHHHH
Confidence            445566677777888999999999999998754332344556666677778899999999999999876543  234556


Q ss_pred             hHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHH-H---HH
Q 009975          176 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE-L---AI  251 (521)
Q Consensus       176 l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~-~---~~  251 (521)
                      ....+.+...|+...||+.+.+.+..++...+.=....++..-+..-..|++..|+..+.+++..+.-.-.++ .   -.
T Consensus       893 yY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~~~cakmlrRv~DEEg~I~kLv~etf~klWF~p~~~~~d~~~~  972 (1692)
T KOG1020|consen  893 YYDQIIERILDTGVSVRKRVIKILRDICEETPDFSKIVDMCAKMLRRVNDEEGNIKKLVRETFLKLWFTPVPEVNDQPAK  972 (1692)
T ss_pred             HHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHhccCCCcccccHHH
Confidence            6777788889999999999999999998765432222344455555667888889999999988765432211 0   00


Q ss_pred             HhhhHHH-------HHhccCCcHHHHHHHHHHHH--ccccccChHH--HHHhHHHHHHHhh------------cCCChHH
Q 009975          252 QHILPCV-------KELSSDSSQHVRSALASVIM--GMAPLLGKDA--TIEQLLPIFLSLL------------KDEFPDV  308 (521)
Q Consensus       252 ~~~~~~l-------~~~~~d~~~~vr~~~~~~l~--~i~~~~~~~~--~~~~l~~~l~~~l------------~d~~~~v  308 (521)
                      ..-++..       ..+..+..+..-...+..-.  .......+..  ..+..+..+..++            .+.+.++
T Consensus       973 ~~kI~~~~~vv~~~~d~~~~~~eqLl~~ilk~~~~~~~~~~~~~v~~~~v~~~~~L~~~cl~~~i~ev~~~~~~~~~~~~ 1052 (1692)
T KOG1020|consen  973 ARKISLEVDVVMSQVDLMNDWLEQLLDHILKFYLLKTMKESVKPVALAKVTHVLNLLTHCLVEKISEVESDDMNEEESEV 1052 (1692)
T ss_pred             HHhhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHhhhhhhhhhHHHHhhcchHHHHHHHHHHHHHHhhhhHhhhcccchh
Confidence            0001111       11222222211111110000  0000000000  0111122222111            2233344


Q ss_pred             H-HHHHHHHHHhhhhhchhhH----hhhHHHHHHHHh-cCCChHHHHHHHHHhHHHHhhhCh--hhhHHHHHHHHHHHcC
Q 009975          309 R-LNIISKLDQVNQVIGIDLL----SQSLLPAIVELA-EDRHWRVRLAIIEYIPLLASQLGV--GFFDDKLGALCMQWLQ  380 (521)
Q Consensus       309 r-~~a~~~l~~~~~~~~~~~~----~~~~~~~l~~~~-~~~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~  380 (521)
                      | .+.+..|..+++.-+ ..+    ...+.|.+..-. .-...++-..++..+..+...+..  +.|...+-..++..+-
T Consensus      1053 ~~~~~lstL~~FskirP-~Llt~khv~tL~PYL~s~~~t~~~~~fl~~vi~Ile~VlPlv~~~sesfL~sLEe~L~~~i~ 1131 (1692)
T KOG1020|consen 1053 RLLAYLSTLFVFSKIRP-QLLTKKHVITLQPYLTSKASTIEEAQFLYYVIQILECVLPLVANPSESFLASLEEDLLKRIV 1131 (1692)
T ss_pred             HHHHHHHHHHHHHhcCc-hhccHHHHHHhhhHHhccccchHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHH
Confidence            4 344555555554322 211    133444443321 112345556666666666555432  3444555555555554


Q ss_pred             CCcHHHHHHHHHHHHHHHHHhCHHH-HHhhhHHHHHhhh-------cCc----chHHHHHHHHHHHHhhcccC-------
Q 009975          381 DKVYSIRDAAANNLKRLAEEFGPEW-AMQHITPQVLEMI-------NNP----HYLYRMTILRAISLLAPVMG-------  441 (521)
Q Consensus       381 d~~~~vr~~a~~~l~~l~~~~~~~~-~~~~l~~~l~~~l-------~~~----~~~~r~~a~~~l~~l~~~~~-------  441 (521)
                      -..-..-..|..|++.++....... ....++..+...+       ++.    +...-...+.++|.++.++.       
T Consensus      1132 k~g~a~V~~~vsCl~sl~~k~~~~~~~v~~cf~~~~k~le~~k~s~~en~~~~~~p~l~RsiftlG~l~Ryfdf~~~~~~ 1211 (1692)
T KOG1020|consen 1132 KMGMATVVEAVSCLGSLATKRTDGAKVVKACFSCYLKLLEVIKSSNNENADIVNFPKLQRSIFTLGLLSRYFDFPKPSND 1211 (1692)
T ss_pred             hcchHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHHHHHHhccCCCccCC
Confidence            4455555677888888887532211 1222222222211       122    33455677888888887432       


Q ss_pred             -h------HHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchHHHHhhHHHHHHHhcCCCCccHH
Q 009975          442 -S------EITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVR  504 (521)
Q Consensus       442 -~------~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~~~~~~~~l~~l~~D~~~~vr  504 (521)
                       .      +...+.++..+....++....+|..|+..+|.++-.-+.=.+.+.+...+...++|...++.
T Consensus      1212 g~~~~~~~~~~~e~v~~lL~~f~k~~~~~lR~~al~~Lg~~ci~hp~l~~~~~v~nly~~ila~~n~~~~ 1281 (1692)
T KOG1020|consen 1212 GKTFLQEGETLKEKVLILLMYFSKDKDGELRRKALINLGFICIQHPSLFTSREVLNLYDEILADDNSDIK 1281 (1692)
T ss_pred             CccchhhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhCchhhhhHHHHHHHHHHHhhhcccHH
Confidence             1      12345566666667788889999999999999987644444556677777765555544443

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=99.02  E-value=8e-06  Score=81.33  Aligned_cols=143  Identities=15%  Similarity=0.103  Sum_probs=101.4

Q ss_pred             HHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcChhhhhh
Q 009975           95 KTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVA  174 (521)
Q Consensus        95 ~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~  174 (521)
                      ...+++-+.+.....|.++++-.-..+..+++..+.  ..-..++.+.+=++|+++.+|..|++.++.+-    ......
T Consensus        53 mssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~--~~lLavNti~kDl~d~N~~iR~~AlR~ls~l~----~~el~~  126 (757)
T COG5096          53 MSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPE--LALLAVNTIQKDLQDPNEEIRGFALRTLSLLR----VKELLG  126 (757)
T ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHH--HHHHHHHHHHhhccCCCHHHHHHHHHHHHhcC----hHHHHH
Confidence            455666555555566777777776666666655442  12233555666677888999999988887654    334667


Q ss_pred             hhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCccccc-hHHHHHHhcCCChHHHHHHHHHhHHHHHhh
Q 009975          175 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMD-LVPAYVRLLRDNEAEVRIAAAGKVTKFCRI  244 (521)
Q Consensus       175 ~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~-l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~  244 (521)
                      .+++.+.++++|+++.||+.|+-++.++-+ .+++..... +...+..++.|+++.|...|+.++..+-..
T Consensus       127 ~~~~~ik~~l~d~~ayVRk~Aalav~kly~-ld~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e  196 (757)
T COG5096         127 NIIDPIKKLLTDPHAYVRKTAALAVAKLYR-LDKDLYHELGLIDILKELVADSDPIVIANALASLAEIDPE  196 (757)
T ss_pred             HHHHHHHHHccCCcHHHHHHHHHHHHHHHh-cCHhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence            788888999999999999999998887765 333333333 778888888899999988888888776554

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.01  E-value=5.4e-05  Score=77.62  Aligned_cols=456  Identities=13%  Similarity=0.121  Sum_probs=258.2

Q ss_pred             hhHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHHHhHHHHHHHhhcCCCCcchhhhhhhhhhhcCCCC-hHHHHHHHH
Q 009975           22 LPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAP-DILKTELRS  100 (521)
Q Consensus        22 ~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~p~i~~~~~~~~~~~r~~~~~~~~~~~~~~~-~~~~~~l~~  100 (521)
                      +..|..+..++|..-+..--.+++....++||+.+.. ++|+=.  ..+.....|.=.+-++.....+.+ ....+.++|
T Consensus       393 L~~l~~lr~~~d~~~~~~ld~~IGSAV~AmGPe~vL~-~lpLnl--~~~s~~~~RsWLLPvLR~~i~~A~La~F~~~ivp  469 (1176)
T KOG1248|consen  393 LEGLCDLRASPDFFHKLQLDQCIGSAVRAMGPERVLT-ILPLNL--HAESLSFTRSWLLPVLRDYIIGASLAFFTEYIVP  469 (1176)
T ss_pred             HHHHHHhhcCCCCccHHHHHHHHHHHHHhhCHHHHHH-Hcchhc--cccccccchhHhHHHHHHhhccCcHHHHHHHHHH
Confidence            4444445557777778888889999999999987642 233221  112222222222222222111111 123455666


Q ss_pred             HHHHhcC------CCChHHHHHHHHhHH-HHHHhhCc--------hhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhh
Q 009975          101 IYTQLCQ------DDMPMVRRSAASNLG-KFAATVEP--------AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGK  165 (521)
Q Consensus       101 ~l~~l~~------~~~~~vr~~a~~~l~-~l~~~~~~--------~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~  165 (521)
                      +...+..      +....++  ..+.|. ++...++.        ......+-|.+...+.. .+..|...+..|..+.+
T Consensus       470 la~sl~~K~~~l~~~~~~~~--~~~tl~~QLW~LLP~FC~~P~Dl~~sF~~la~~l~~al~~-~~elr~~Ic~sL~~Lv~  546 (1176)
T KOG1248|consen  470 LAMSLQLKAKKLKEAGSQVS--LYDTLVDQLWSLLPGFCNYPVDLAESFTDLAPILGAALLK-RPELRETICNSLRMLVE  546 (1176)
T ss_pred             HHHHHHHHHHhhhhccCcHH--HHHHHHHHHHHhChhhhCCCccHHHHHHHHHHHHHHHHhc-chHhHHHHHHHHHHHHH
Confidence            5554421      1111111  222222 23333321        11223444444443332 33778888888888776


Q ss_pred             hcCh--------h---hhhhhhHHHHHHhcCCC------ChHHHHHHHHHHH-HHHHHhCCCccccchHHHHHHhcCCCh
Q 009975          166 LLEP--------Q---DCVAHILPVIVNFSQDK------SWRVRYMVANQLY-ELCEAVGPEPTRMDLVPAYVRLLRDNE  227 (521)
Q Consensus       166 ~~~~--------~---~~~~~l~~~l~~~~~d~------~~~vR~~~~~~l~-~i~~~~~~~~~~~~l~~~l~~~l~d~~  227 (521)
                      .-.+        +   ..-..++|.+...-..+      ....|....+.+. ..... .+......+...+.....|.+
T Consensus       547 ~n~~~~~a~e~~e~~s~~AknfL~~lfn~ytq~~~~~~~~l~~~~~~L~~i~~~~~~~-t~~dv~~~l~~s~~e~as~~~  625 (1176)
T KOG1248|consen  547 QNKPSSDAAENKEVLSNDAKNFLPRLFNVYTQTVAAGRKILASRSTVLEIIRVDYFTV-TPTDVVGSLKDSAGELASDLD  625 (1176)
T ss_pred             cCCCcchHHHHHHHHhhhhhHHHHHHHHHhcCCCccccccHHHHHHHHHHHHHHHhhc-ccHHHHHHHHHHHHhHhccch
Confidence            6311        0   11123555555543322      2234444444333 11111 112222445555666666665


Q ss_pred             HHHHHHH----HHhHHHHHhhhCHHHHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccCh----HHHHHhHHHHHHH
Q 009975          228 AEVRIAA----AGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK----DATIEQLLPIFLS  299 (521)
Q Consensus       228 ~~vr~~a----~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~----~~~~~~l~~~l~~  299 (521)
                      ..++.--    +..+..++...+...+. .+....-..-+..+..++.-+...+..+...-.-    ....+++...+..
T Consensus       626 ~s~~~~~~~slLdl~~~~a~~~~e~~vs-~l~~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~d  704 (1176)
T KOG1248|consen  626 ESVASFKTLSLLDLLIALAPVQTESQVS-KLFTVDPEFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLD  704 (1176)
T ss_pred             hhhhhHHHHHHHHHHHhhhccccchhHH-HHHHhhHHhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHH
Confidence            5554322    22233333333333322 2222222223344677888888888887766211    1223456666677


Q ss_pred             hhcCCChHHHHHHHHHHHHhhhhhchhh--HhhhHHHHHHHHhcCCChHHHHHHHHHhHHHH--hh---hChhh---hHH
Q 009975          300 LLKDEFPDVRLNIISKLDQVNQVIGIDL--LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLA--SQ---LGVGF---FDD  369 (521)
Q Consensus       300 ~l~d~~~~vr~~a~~~l~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~--~~---~~~~~---~~~  369 (521)
                      .+++.....|...+.++..+.+..+.+.  +....+|.+.-..++.+..-|..+..+|..+.  ..   .|.+.   ..+
T Consensus       705 s~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~ln  784 (1176)
T KOG1248|consen  705 SFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILN  784 (1176)
T ss_pred             HHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHH
Confidence            7777888899999999999998888443  23444554444447778788888877777766  22   24333   234


Q ss_pred             HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHh---CHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChHH--
Q 009975          370 KLGALCMQWLQDKVYSIRDAAANNLKRLAEEF---GPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI--  444 (521)
Q Consensus       370 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~---~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~--  444 (521)
                      .+++.+...+-.....++...+-++..+...+   ..+.....++..+...+.+.+..++.+|+.++..+...++..-  
T Consensus       785 efl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~  864 (1176)
T KOG1248|consen  785 EFLSIISAGLVGDSTRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLS  864 (1176)
T ss_pred             HHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHh
Confidence            45555555544444445444455555555444   2344566778888888999999999999999999998777643  


Q ss_pred             -HhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchHHHH
Q 009975          445 -TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVE  485 (521)
Q Consensus       445 -~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~~  485 (521)
                       +.+.++|.++.+++|....+|..+-..+..++..+|.+.+.
T Consensus       865 ~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirkfg~~eLe  906 (1176)
T KOG1248|consen  865 PHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRKFGAEELE  906 (1176)
T ss_pred             hhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCHHHHH
Confidence             45778999999999999999999999999999999987664

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]

Probab=98.96  E-value=2.4e-07  Score=93.45  Aligned_cols=193  Identities=12%  Similarity=0.140  Sum_probs=140.6

Q ss_pred             HHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhc---hhhHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChh
Q 009975          289 TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG---IDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG  365 (521)
Q Consensus       289 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~  365 (521)
                      ....+-+.+...+.+.++.-|..|++.+-..++.-+   .......+...+.-...|.|-.+...++..|..+++.++..
T Consensus       250 i~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~  329 (815)
T KOG1820|consen  250 ILSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPL  329 (815)
T ss_pred             hhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchh
Confidence            344555555666666666666666666655544332   11111233344444567778888888888888888887764


Q ss_pred             --hhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccCh-
Q 009975          366 --FFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS-  442 (521)
Q Consensus       366 --~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~-  442 (521)
                        .+...+.|.++..++|....+|.++..++..++..+.    ...+.+.+...+++.+++.|..+..++.......+. 
T Consensus       330 ~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~----l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~  405 (815)
T KOG1820|consen  330 FRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNSTP----LSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPK  405 (815)
T ss_pred             hHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhccc----HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCc
Confidence              3345577888899999999999999999888887554    456777888889999999999999999998887772 


Q ss_pred             ---HHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchHHHH
Q 009975          443 ---EITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVE  485 (521)
Q Consensus       443 ---~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~~  485 (521)
                         ......+.|.++...+|....||.+|.++++.+...+|.+.+.
T Consensus       406 ~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~~~  451 (815)
T KOG1820|consen  406 TVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEVFK  451 (815)
T ss_pred             CcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHHHH
Confidence               2234678899999999999999999999999999988876654

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]

Probab=98.96  E-value=6.3e-08  Score=97.57  Aligned_cols=359  Identities=17%  Similarity=0.193  Sum_probs=234.2

Q ss_pred             HHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcChhhhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCccc-cc
Q 009975          136 DIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR-MD  214 (521)
Q Consensus       136 ~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~-~~  214 (521)
                      .+++....++......+|.....++..+...    .........+..+..-..+..=..++.++..++...+..... ..
T Consensus        63 ~l~~~~~~~l~~~~~~~~~~~~~~~~~i~~~----~~~~~~~e~~~~~~~~k~pk~~~~~~~~~~~lv~~~g~p~~~~~~  138 (815)
T KOG1820|consen   63 QLLSFGLKCLDSKRVNIRDTKTQSLLRIGKL----EDIKEVVEAAKALLSFKSPKKIAAAVAAVLSLVEEFGKPKVPSKA  138 (815)
T ss_pred             eeccchhhhcccccccccCcchhHHHHHHHh----hhhHHHHHHHHhhccccCchhHHHHHHHHHHHHHHhcCCCCcccc
Confidence            4556666666666666677666666666222    223445555566666666666666777777777776644332 23


Q ss_pred             hHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccChHH--HHHh
Q 009975          215 LVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA--TIEQ  292 (521)
Q Consensus       215 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~--~~~~  292 (521)
                      +++.+-++.   +..||..+...+..+-...|...     .+.+.          +......++.+..+.|...  +.+.
T Consensus       139 ~~~~~~~l~---D~nvr~~~~~l~v~i~r~~G~~~-----~~~~~----------~~~~~~l~~~~~~~~~~~~~~~~~~  200 (815)
T KOG1820|consen  139 FIKHVGSLA---DKNVRSEASKLLVEIYRWTGDAS-----KPLLF----------KASAPGLMGKLGSYQGKSMMSFFNE  200 (815)
T ss_pred             ccccCcccc---ccccchhhcccchhhhhhcCCCc-----Ccccc----------hhhhHHHHHHHHhhccccccccccc
Confidence            444444444   55799999999988887666432     11110          2222233333333222211  0001


Q ss_pred             HHHHHHHhhc---CCChHHHHHHHHHHHHh-----------hhhhchhhHhhhHHHHHHHHhcCCChHHHHHHHHHhHHH
Q 009975          293 LLPIFLSLLK---DEFPDVRLNIISKLDQV-----------NQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLL  358 (521)
Q Consensus       293 l~~~l~~~l~---d~~~~vr~~a~~~l~~~-----------~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l  358 (521)
                      --|...+...   +++..-+...-......           ...+.+......+-+.+..-+.+++|.-|..+++.+...
T Consensus       201 ~~~~~~~~~~~~~~~n~~e~~~~~~~~~~~~~~~~~s~~d~~d~l~~~di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~  280 (815)
T KOG1820|consen  201 KRPLLKSQPQDESDPNVKEQLEKPERGLQRSKSGFTSPIDNFDLLPRVDILSKITKNLETEMLSKKWKDRKEALEELVAI  280 (815)
T ss_pred             cccccccccccccCCChhhcccccccccccccCCCCCCccccccCchhhhhhhcChHHHHhhhccchHHHHHHHHHHHHH
Confidence            1111111111   11111111110000000           011222334467777888888999999999999988887


Q ss_pred             HhhhC---hhhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHHH--HHhhhHHHHHhhhcCcchHHHHHHHHHH
Q 009975          359 ASQLG---VGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW--AMQHITPQVLEMINNPHYLYRMTILRAI  433 (521)
Q Consensus       359 ~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~~~~~~~r~~a~~~l  433 (521)
                      .+.-+   ...+...+...+-..+.|.|..|-..++.++..++..++..+  +...++|.+.+.+.+....+|.++..++
T Consensus       281 l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~  360 (815)
T KOG1820|consen  281 LEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYAKNVFPSLLDRLKEKKSELRDALLKAL  360 (815)
T ss_pred             HhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHHhhcchHHHHhhhccHHHHHHHHHHH
Confidence            76655   123345566666677899999999999999999999887654  4567899999999999999999999999


Q ss_pred             HHhhcccChHHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhch----HHHHhhHHHHHHHhcCCCCccHHHHHHH
Q 009975          434 SLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ----SMVEKTIRPCLVELTEDPDVDVRFFATQ  509 (521)
Q Consensus       434 ~~l~~~~~~~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~----~~~~~~~~~~l~~l~~D~~~~vr~~a~~  509 (521)
                      ..++...    ....+.+.+...+++.++.+|......+.......++    ......+.|.+....+|.+.+||..|..
T Consensus       361 d~~~ns~----~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e  436 (815)
T KOG1820|consen  361 DAILNST----PLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALE  436 (815)
T ss_pred             HHHHhcc----cHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHH
Confidence            8888733    3467888999999999999999999999988887773    2334778999999999999999999999


Q ss_pred             HHHHHHHhhcc
Q 009975          510 AIQSIDHVMMS  520 (521)
Q Consensus       510 al~~l~~~~~~  520 (521)
                      ++..+.+..|.
T Consensus       437 ~~~~v~k~~Ge  447 (815)
T KOG1820|consen  437 AVAAVMKVHGE  447 (815)
T ss_pred             HHHHHHHHhhH
Confidence            99999988764

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.94  E-value=1.7e-05  Score=76.34  Aligned_cols=242  Identities=13%  Similarity=0.110  Sum_probs=140.4

Q ss_pred             CCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcChhhhhhhhHH---------
Q 009975          108 DDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILP---------  178 (521)
Q Consensus       108 ~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~---------  178 (521)
                      +....||+.++-++-.+.+..+.-....+...-+.++++|.+-.|-.++...+..+++..+++ +...+.+         
T Consensus       159 ~~~~~vkqkaALclL~L~r~spDl~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~-yk~~~~~avs~L~riv  237 (938)
T KOG1077|consen  159 SSMDYVKQKAALCLLRLFRKSPDLVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPES-YKTCLPLAVSRLSRIV  237 (938)
T ss_pred             cchHHHHHHHHHHHHHHHhcCccccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHH-HhhhHHHHHHHHHHHH
Confidence            344566766666666666665543333345555556666666666666666666666655442 1111111         


Q ss_pred             --------------------------HHHHhcCCCChHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCC-hHHHH
Q 009975          179 --------------------------VIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDN-EAEVR  231 (521)
Q Consensus       179 --------------------------~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~-~~~vr  231 (521)
                                                ++..+-...++.+|....+++.++.....+....           ++. ....+
T Consensus       238 ~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~evl~~iLnk~~~~~~~-----------k~vq~~na~  306 (938)
T KOG1077|consen  238 VVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLNEVLERILNKAQEPPKS-----------KKVQHSNAK  306 (938)
T ss_pred             hhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHhccccCccc-----------cchHhhhhH
Confidence                                      1111111223333444444433333211111000           010 11222


Q ss_pred             HHHHHhHHHHHhhhCHH-HHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccChHHHHHhHHHHHHHhhc-CCChHHH
Q 009975          232 IAAAGKVTKFCRILNPE-LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLK-DEFPDVR  309 (521)
Q Consensus       232 ~~a~~~l~~l~~~~~~~-~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~-d~~~~vr  309 (521)
                      .+.+--.-.++.+++++ ......+..+-+++.+++..+|.-+.+.+..++..-.......+=...++..++ +.+-.+|
T Consensus       307 naVLFeaI~l~~h~D~e~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h~d~Ii~sLkterDvSir  386 (938)
T KOG1077|consen  307 NAVLFEAISLAIHLDSEPELLSRAVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKHQDTIINSLKTERDVSIR  386 (938)
T ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHHHHHHHHHhccccchHHH
Confidence            33322223344444433 445667777888889999999999999998887653332223333666777777 8889999


Q ss_pred             HHHHHHHHHhhhhhchhhHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChh
Q 009975          310 LNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG  365 (521)
Q Consensus       310 ~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~  365 (521)
                      +.|+.-|..++..-..    +.++..+.+++...++.+|+..+--..-+++.+..+
T Consensus       387 rravDLLY~mcD~~Na----k~IV~elLqYL~tAd~sireeivlKvAILaEKyAtD  438 (938)
T KOG1077|consen  387 RRAVDLLYAMCDVSNA----KQIVAELLQYLETADYSIREEIVLKVAILAEKYATD  438 (938)
T ss_pred             HHHHHHHHHHhchhhH----HHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCC
Confidence            9999999999875443    566777788888889999998888888888777655

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=98.92  E-value=1.5e-05  Score=76.87  Aligned_cols=304  Identities=17%  Similarity=0.197  Sum_probs=186.6

Q ss_pred             ChHHHHHHHHHHHHHHHHhCCCc---c-----ccchHHHHHHhcC-----CC--hHHHHHHHHHhHHHHHhhhCHHH---
Q 009975          188 SWRVRYMVANQLYELCEAVGPEP---T-----RMDLVPAYVRLLR-----DN--EAEVRIAAAGKVTKFCRILNPEL---  249 (521)
Q Consensus       188 ~~~vR~~~~~~l~~i~~~~~~~~---~-----~~~l~~~l~~~l~-----d~--~~~vr~~a~~~l~~l~~~~~~~~---  249 (521)
                      +...-..+++++..+......+.   .     ...++|.+.+...     +.  ++.+-..+...+..+...++.+.   
T Consensus        56 ~~~~~~~il~tl~~~~~~~~~~~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~  135 (415)
T PF12460_consen   56 SSDYCHAILSTLQSLLEKKQEDKQFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQE  135 (415)
T ss_pred             ChHHHHHHHHHHHHHHHhcccccccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHH
Confidence            55566667777777765543332   1     1126666666542     22  25666667777777777777653   


Q ss_pred             HHHhhhHHHHH------hccCCc--HHHHHHHHHHHHccccccChHHH---HHhHHHHHHHh-hcCCChHHHHHHHHHHH
Q 009975          250 AIQHILPCVKE------LSSDSS--QHVRSALASVIMGMAPLLGKDAT---IEQLLPIFLSL-LKDEFPDVRLNIISKLD  317 (521)
Q Consensus       250 ~~~~~~~~l~~------~~~d~~--~~vr~~~~~~l~~i~~~~~~~~~---~~~l~~~l~~~-l~d~~~~vr~~a~~~l~  317 (521)
                      +.+.+...+..      +-.+.+  +.........+..+...+.++..   .+.++..+..+ .+..++..|..+++.++
T Consensus       136 ~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la  215 (415)
T PF12460_consen  136 ILDELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSAILCSLRKDVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLA  215 (415)
T ss_pred             HHHHHHHHHccccccCCCCccccccccccccHHHHHHHHHHcCCcccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence            23333333320      000111  01111122222222222222221   22355555544 44456899999999999


Q ss_pred             HhhhhhchhhHhhhHHHHHHHHh-cCCChHHHHHHHHHhHHHHhhh--ChhhhHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q 009975          318 QVNQVIGIDLLSQSLLPAIVELA-EDRHWRVRLAIIEYIPLLASQL--GVGFFDDKLGALCMQWLQDKVYSIRDAAANNL  394 (521)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~vr~~~~~~l~~l~~~~--~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l  394 (521)
                      .+......+...+.++..+.... .......|...++.+..+.+.+  ..+.....+...+.+++.|  +.+...+++++
T Consensus       216 ~LvNK~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~lL~~--~~~g~~aA~~f  293 (415)
T PF12460_consen  216 SLVNKWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLATELLDKLLELLSS--PELGQQAAKAF  293 (415)
T ss_pred             HHHcCCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhCC--hhhHHHHHHHH
Confidence            99888655443355555555544 4455566777777776666654  2223345567777788888  67788889998


Q ss_pred             HHHHHHhCH---------------HHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChHHHh---hcHHHHHHhh
Q 009975          395 KRLAEEFGP---------------EWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITC---SRLLPVVINA  456 (521)
Q Consensus       395 ~~l~~~~~~---------------~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~---~~il~~l~~~  456 (521)
                      +.+......               ..+...++|.+.+..++.+...|..++.++..+.++.+...+.   +.++|.+++.
T Consensus       294 ~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqs  373 (415)
T PF12460_consen  294 GILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQS  373 (415)
T ss_pred             hhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHH
Confidence            888754211               1133567888888877777779999999999999988877653   6799999999


Q ss_pred             cCCCCchHHHHHHHHHHHHHhhhchHHHH---hhHHHHHHH
Q 009975          457 SKDRVPNIKFNVAKVLQSLIPIVDQSMVE---KTIRPCLVE  494 (521)
Q Consensus       457 l~d~~~~VR~~a~~~l~~~~~~~~~~~~~---~~~~~~l~~  494 (521)
                      ++-+++.+|.++++++..+...- ++.+.   +.+.|.|.+
T Consensus       374 L~~~~~~v~~s~L~tL~~~l~~~-~~~i~~hl~sLI~~LL~  413 (415)
T PF12460_consen  374 LSLPDADVLLSSLETLKMILEEA-PELISEHLSSLIPRLLK  413 (415)
T ss_pred             hCCCCHHHHHHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHh
Confidence            99999999999999999998764 33333   344554443

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=98.85  E-value=4e-06  Score=83.42  Aligned_cols=168  Identities=18%  Similarity=0.192  Sum_probs=126.1

Q ss_pred             hcCCChhHHHHHHHHHHHHhhhcChhhhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcC
Q 009975          145 TQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLR  224 (521)
Q Consensus       145 ~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~  224 (521)
                      +.+.++..|..|++-+-....   .......++|-+.+.....+.++|+-+.-.+..+++..+...  -..++.+++-++
T Consensus        28 l~s~n~~~kidAmK~iIa~M~---~G~dmssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~--lLavNti~kDl~  102 (757)
T COG5096          28 LESSNDYKKIDAMKKIIAQMS---LGEDMSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELA--LLAVNTIQKDLQ  102 (757)
T ss_pred             ccccChHHHHHHHHHHHHHHh---cCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHH--HHHHHHHHhhcc
Confidence            555666667666654433222   122356677777777778899999999888887776544222  235677888899


Q ss_pred             CChHHHHHHHHHhHHHHHhhhCHHHHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccChHHHHHh-HHHHHHHhhcC
Q 009975          225 DNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQ-LLPIFLSLLKD  303 (521)
Q Consensus       225 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~-l~~~l~~~l~d  303 (521)
                      |+++.+|..|+..++.+    +...+.+.+++.++++++|+++.||..|+-++..+.+. +++...+. ....+..++.|
T Consensus       103 d~N~~iR~~AlR~ls~l----~~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~l-d~~l~~~~g~~~~l~~l~~D  177 (757)
T COG5096         103 DPNEEIRGFALRTLSLL----RVKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRL-DKDLYHELGLIDILKELVAD  177 (757)
T ss_pred             CCCHHHHHHHHHHHHhc----ChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhc-CHhhhhcccHHHHHHHHhhC
Confidence            99999999999988775    44566788999999999999999999999999887643 33333444 66777788899


Q ss_pred             CChHHHHHHHHHHHHhhhh
Q 009975          304 EFPDVRLNIISKLDQVNQV  322 (521)
Q Consensus       304 ~~~~vr~~a~~~l~~~~~~  322 (521)
                      ++|.|..+|+.++..+...
T Consensus       178 ~dP~Vi~nAl~sl~~i~~e  196 (757)
T COG5096         178 SDPIVIANALASLAEIDPE  196 (757)
T ss_pred             CCchHHHHHHHHHHHhchh
Confidence            9999999999999988765

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=98.85  E-value=1.4e-05  Score=77.23  Aligned_cols=278  Identities=13%  Similarity=0.110  Sum_probs=165.8

Q ss_pred             hHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhc----------CCC--hhHHHHHHHHHHHHhhhcChhhh---hhh
Q 009975          111 PMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQ----------DDQ--DSVRLLAVEGCAALGKLLEPQDC---VAH  175 (521)
Q Consensus       111 ~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~----------d~~--~~vr~~a~~~l~~l~~~~~~~~~---~~~  175 (521)
                      +.+=..+...++.+++.++.+..... +..+..+..          +..  .......+-.+..+...++++..   ...
T Consensus       111 ~~~L~~~~~l~~~iv~~l~~~~q~~~-~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~  189 (415)
T PF12460_consen  111 DRVLELLSRLINLIVRSLSPEKQQEI-LDELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSAILCSLRKDVSLPDLEE  189 (415)
T ss_pred             hHHHHHHHHHHHHHHHhCCHHHHHHH-HHHHHHHHccccccCCCCccccccccccccHHHHHHHHHHcCCcccCccCHHH
Confidence            56667777777777777775544333 333222221          111  01122233334444444444322   222


Q ss_pred             hHHHHHHh-cCCCChHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhc-CCChHHHHHHHHHhHHHHHhhh--CHHHHH
Q 009975          176 ILPVIVNF-SQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLL-RDNEAEVRIAAAGKVTKFCRIL--NPELAI  251 (521)
Q Consensus       176 l~~~l~~~-~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~--~~~~~~  251 (521)
                      ++..+..+ ....++..|..+++.++.++..++.+.....++..+.... ...+...|..++..+..+.+.+  ......
T Consensus       190 ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~  269 (415)
T PF12460_consen  190 LLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLA  269 (415)
T ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchH
Confidence            44444443 4456688999999999988887655544445555555544 4455667777777777766654  111223


Q ss_pred             HhhhHHHHHhccCCcHHHHHHHHHHHHccccccChHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchhhHhhh
Q 009975          252 QHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQS  331 (521)
Q Consensus       252 ~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~  331 (521)
                      ..+...+.+++.|  +.+...++++++.+..-.+  .....          ...            ...+.+-++.+...
T Consensus       270 ~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~--~~l~~----------~~~------------a~vklLykQR~F~~  323 (415)
T PF12460_consen  270 TELLDKLLELLSS--PELGQQAAKAFGILLSDSD--DVLNK----------ENH------------ANVKLLYKQRFFTQ  323 (415)
T ss_pred             HHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcH--HhcCc----------ccc------------chhhhHHhHHHHHH
Confidence            3455666666666  5566777777766652211  00000          111            11222333455678


Q ss_pred             HHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChhhhH---HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHHH---
Q 009975          332 LLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD---DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW---  405 (521)
Q Consensus       332 ~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~---~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~---  405 (521)
                      ++|.+.+..++.+...|...+.++..+.++++.+.+.   +.++|++++.+.-++.+++.+++.++..+...- ++.   
T Consensus       324 ~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~-~~~i~~  402 (415)
T PF12460_consen  324 VLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA-PELISE  402 (415)
T ss_pred             HHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC-HHHHHH
Confidence            8888888777766668889999999999999887554   568999999999899999999999998888654 221   


Q ss_pred             HHhhhHHHHHh
Q 009975          406 AMQHITPQVLE  416 (521)
Q Consensus       406 ~~~~l~~~l~~  416 (521)
                      ..+.++|.+.+
T Consensus       403 hl~sLI~~LL~  413 (415)
T PF12460_consen  403 HLSSLIPRLLK  413 (415)
T ss_pred             HHHHHHHHHHh
Confidence            23455555543

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]

Probab=98.83  E-value=2.1e-05  Score=78.30  Aligned_cols=478  Identities=15%  Similarity=0.114  Sum_probs=243.1

Q ss_pred             hhhhHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHHHhHHHHHHHhhcCCCCcchhhhhhhhhhhcCCCChH-HHHHH
Q 009975           20 VLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI-LKTEL   98 (521)
Q Consensus        20 ~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~p~i~~~~~~~~~~~r~~~~~~~~~~~~~~~~~-~~~~l   98 (521)
                      .+..++...+-|+-+.||..|+..+.++.+-.+...- ..++..+.+-..|+.+.++.+.-.++.....-++.+ ....+
T Consensus       472 ~~~~~~~~rClDkaaavR~~al~s~tk~l~l~~~~~~-~sIl~~~inS~~d~~fs~ves~~~~~~~~~~~~s~~~~tt~~  550 (1529)
T KOG0413|consen  472 VLYNIVYMRCLDKAAAVRLHALNSLTKILQLQSHREA-FSILCATINSEMDEKFSAVESLEDLNVSGKAPSSKTKKTTDL  550 (1529)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccch-HHHHHHhcCCccccchhHHHhchhhhhcccCcccccccchhh
Confidence            4666777778899999999999999988887654322 234444444444566777766655554433222222 11111


Q ss_pred             HHHHHHhcCCCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhc-CCChhHHHHHHHHHHHHhhhcChhhhhhhhH
Q 009975           99 RSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQ-DDQDSVRLLAVEGCAALGKLLEPQDCVAHIL  177 (521)
Q Consensus        99 ~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~  177 (521)
                      +.--.+...|..           +.+... ++-.+...++..+.+-.+ |+...+|..|+..+.....+...+...+..+
T Consensus       551 l~~~~~ii~d~~-----------~~~~~~-ge~~~e~~V~~mi~Rr~~~d~k~~v~k~a~~~l~S~l~~cD~~~~fe~~L  618 (1529)
T KOG0413|consen  551 LLDEQQIIQDFK-----------LKLMNK-GETRVEKDVVYMIVRRLSTDDKAPVKKAACSLLKSYLSYCDEASKFEVVL  618 (1529)
T ss_pred             cCcchhhhhhcc-----------hhhhhc-cccHHHHHHHHHHHHHhccCCCcccchhhHHHHHHHHhccchhhcchhHH
Confidence            111111222211           111111 122345566666666555 7778899999999988888776665566678


Q ss_pred             HHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCc-cccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhh-----CHHHHH
Q 009975          178 PVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP-TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRIL-----NPELAI  251 (521)
Q Consensus       178 ~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~-~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~-----~~~~~~  251 (521)
                      -++..+|.|+-..||..++..++++...-+.-. ....-+-.++..+.|.+..|...|...+..+..-+     +-.++.
T Consensus       619 ~iLq~lCrd~~vsvrk~~~~Sltel~~~~pr~~~~~~~wl~~li~~~~d~es~v~e~a~~~i~k~l~p~~~~~~dlaW~L  698 (1529)
T KOG0413|consen  619 SILQMLCRDRMVSVRKTGADSLTELMLRDPRLFSLSSKWLHTLISMLNDTESDVTEHARKLIMKVLTPLLENSSDLAWTL  698 (1529)
T ss_pred             HHHHHHhcCcchHHHHHHHHHHHHHHhhCchhhhhhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhcccCCchHHHH
Confidence            888999999999999999999988764322111 01222344555666777777777766544433221     100100


Q ss_pred             ------------------------H----hhhHHHHHh----ccCCcHHHHHHHHHHHHc--cccc-cC------hHH--
Q 009975          252 ------------------------Q----HILPCVKEL----SSDSSQHVRSALASVIMG--MAPL-LG------KDA--  288 (521)
Q Consensus       252 ------------------------~----~~~~~l~~~----~~d~~~~vr~~~~~~l~~--i~~~-~~------~~~--  288 (521)
                                              +    .++....+.    ..++.|.+-..++-...+  ++.. +.      .+.  
T Consensus       699 L~~i~~~~~~s~yl~~~~h~w~~~~k~~~t~~d~~~~hsG~E~~~~aWm~~s~~~~q~~~~d~S~~~~s~~~~s~~~N~~  778 (1529)
T KOG0413|consen  699 LDTIESVTNHSQYLMSTLHDWVREKKVKRTVMDSMKQHSGSEKLDGAWMVFSQLCVQFEQVDFSIETFSRVDLSRESNLV  778 (1529)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhcccCcccCcchHHHHHHHHhcccccceeeecccccccchhhhHH
Confidence                                    0    011111111    112335443322211111  0000 00      011  


Q ss_pred             -HHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhc----------------h-------------hhHh----hhHHH
Q 009975          289 -TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG----------------I-------------DLLS----QSLLP  334 (521)
Q Consensus       289 -~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~----------------~-------------~~~~----~~~~~  334 (521)
                       +..+++..+-..-+|-....+.....++...++.-+                .             +.+.    ..+.+
T Consensus       779 ~~L~hI~~~i~~i~~~l~s~~vd~~~~a~K~~Ck~~~~~~s~e~~~~~~d~i~~~sl~~~e~~~~~iE~l~~~c~d~i~~  858 (1529)
T KOG0413|consen  779 QYLIHIIENIKKIDDDLKSDLVDTLQGAFKDYCKHPSSRSSYECLGKLMDGIGDRSLHGKEFSDFGIETLLIKCFDTIVQ  858 (1529)
T ss_pred             HHHHHHHHHHHhhhhcccHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHHHhhcccCchHHHhhHHHhccceehh
Confidence             111111111112112222233333333332222211                0             0000    01111


Q ss_pred             HHHHHhcCCChHH------H---HHHHHHhHHHHhhhChhhhHHHHHHHHHHHc----CCC-------------------
Q 009975          335 AIVELAEDRHWRV------R---LAIIEYIPLLASQLGVGFFDDKLGALCMQWL----QDK-------------------  382 (521)
Q Consensus       335 ~l~~~~~~~~~~v------r---~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l----~d~-------------------  382 (521)
                      .+..+....-|..      |   ....-.++.....++.. -..+.++++.+..    .|.                   
T Consensus       859 ~~~~~~~~~~~~~~s~~~~~~l~~~y~v~~~~~~ql~P~a-r~~K~~~lLv~s~~~gssDa~htp~tq~se~p~sqp~~~  937 (1529)
T KOG0413|consen  859 SFEMFKDKDEWKRNSESQERLLCTAYNVAFSYSPQLVPHA-RLGKTLSLLVNSTENGSSDAPHTPPTQLSEVPSSQPSSK  937 (1529)
T ss_pred             HHhhhhhhHHHhhcchhHHHHHHHHhhccccccceeccch-hccceeeeeeeeeccCCCCCCCCCccchhhCcccCCCcc
Confidence            1111111001110      0   00000011111111100 0112222222211    121                   


Q ss_pred             ------cHHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhc-CcchHHHHHHHHHHHHhhcccChHHHhhcHHHHHHh
Q 009975          383 ------VYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMIN-NPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVIN  455 (521)
Q Consensus       383 ------~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-~~~~~~r~~a~~~l~~l~~~~~~~~~~~~il~~l~~  455 (521)
                            .+.+|..+.-.++.++-.-  +...+..+|.+.+-++ +..-.+|...+-+++.++..+..  ..+..+|.+-.
T Consensus       938 v~g~~~~~~vra~~vvTlakmcLah--~~LaKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YTa--m~d~YiP~I~~ 1013 (1529)
T KOG0413|consen  938 VEGAMFSDKVRAVGVVTLAKMCLAH--DRLAKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYTA--MTDRYIPMIAA 1013 (1529)
T ss_pred             ccccccchHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHHH--HHHHhhHHHHH
Confidence                  2346777777888877543  3356678888887554 45678888888888888764432  24678899999


Q ss_pred             hcCCCCchHHHHHHHHHHHHHhhhchHHHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 009975          456 ASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDH  516 (521)
Q Consensus       456 ~l~d~~~~VR~~a~~~l~~~~~~~~~~~~~~~~~~~l~~l~~D~~~~vr~~a~~al~~l~~  516 (521)
                      .|.|+.+-||..++..|..+.+.--..+-...++.++.. +-|..++||..|.-.++.+.+
T Consensus      1014 ~L~Dp~~iVRrqt~ilL~rLLq~~~vKw~G~Lf~Rf~l~-l~D~~edIr~~a~f~~~~vL~ 1073 (1529)
T KOG0413|consen 1014 SLCDPSVIVRRQTIILLARLLQFGIVKWNGELFIRFMLA-LLDANEDIRNDAKFYISEVLQ 1073 (1529)
T ss_pred             HhcCchHHHHHHHHHHHHHHHhhhhhhcchhhHHHHHHH-HcccCHHHHHHHHHHHHHHHh
Confidence            999999999999999999988752222333444455444 368899999999988887754

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=98.82  E-value=5.4e-07  Score=87.27  Aligned_cols=236  Identities=17%  Similarity=0.285  Sum_probs=175.7

Q ss_pred             CcHHHHHHHHHHHHccccccChHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHhc-CC
Q 009975          265 SSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAE-DR  343 (521)
Q Consensus       265 ~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~-~~  343 (521)
                      ++..-+....+.+..+.+.++.......++|.+...+.+.  ...-..+-.+-.+.+......+...++|.+....+ ..
T Consensus       285 kdn~qKs~Flk~Ls~~ip~fp~rv~~~kiLP~L~~el~n~--~~vp~~LP~v~~i~~~~s~~~~~~~~~p~l~pi~~~~~  362 (700)
T KOG2137|consen  285 KDNSQKSSFLKGLSKLIPTFPARVLFQKILPTLVAELVNT--KMVPIVLPLVLLIAEGLSQNEFGPKMLPALKPIYSASD  362 (700)
T ss_pred             cCcHHHHHHHHHHHHhhccCCHHHHHHhhhhHHHHHhccc--cccccccchhhhhhhccchhhhhhhhhHHHHHHhccCC
Confidence            3444567888889999999999998999999998888543  12122222223333434444455788888888766 56


Q ss_pred             ChHHHHHHHHHhHHHHhhhChhhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhh-hcCcc
Q 009975          344 HWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEM-INNPH  422 (521)
Q Consensus       344 ~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~-l~~~~  422 (521)
                      +.+++..+++.++.+.+....+.+.++++|++...++|.+..++..++..+..+.+.+...+..+.++|.+... ++..+
T Consensus       363 ~~~~~l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~vk~~ilP~l~~l~~~tt~  442 (700)
T KOG2137|consen  363 PKQALLFILENMDLLKEKTPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFVKQAILPRLKNLAFKTTN  442 (700)
T ss_pred             cccchhhHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHHHHHHHHHhhcchhcccc
Confidence            67788889999999999999999999999999999999999999999999999999988888889999999885 66778


Q ss_pred             hHHHHHHHHHHHHhhcccChHHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhh-c-hHHHHhhHHHHHHHhcCCCC
Q 009975          423 YLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIV-D-QSMVEKTIRPCLVELTEDPD  500 (521)
Q Consensus       423 ~~~r~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~-~-~~~~~~~~~~~l~~l~~D~~  500 (521)
                      ..++..++-+++.+++.+....+.+.++|++.. .+-.++.+..........+.-.. + .+.....++|.+..+...+.
T Consensus       443 ~~vkvn~L~c~~~l~q~lD~~~v~d~~lpi~~~-~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~~~  521 (700)
T KOG2137|consen  443 LYVKVNVLPCLAGLIQRLDKAAVLDELLPILKC-IKTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVAPS  521 (700)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-hcCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhccc
Confidence            999999999999999877766666666665544 44445666666666665544322 2 35556788888887655444


Q ss_pred             ccH
Q 009975          501 VDV  503 (521)
Q Consensus       501 ~~v  503 (521)
                      -++
T Consensus       522 L~~  524 (700)
T KOG2137|consen  522 LNG  524 (700)
T ss_pred             ccH
Confidence            333

>KOG2032 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.81  E-value=6e-05  Score=69.98  Aligned_cols=258  Identities=16%  Similarity=0.113  Sum_probs=161.5

Q ss_pred             HhhhHHHHHhccCCcHHHHHHHHHHHHccccccChHHH--HHh-HHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchhhH
Q 009975          252 QHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDAT--IEQ-LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL  328 (521)
Q Consensus       252 ~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~--~~~-l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~  328 (521)
                      ..++..+..-..|++..+|..++.+++..+...+.+..  ... +..++..++.+.+.+|...++.+|..+.+......+
T Consensus       257 ~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l  336 (533)
T KOG2032|consen  257 GSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDL  336 (533)
T ss_pred             HHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcch
Confidence            33455556667899999999999999999987665432  223 344556667777899999999999998877655444


Q ss_pred             hhhHHH---HHHHHhcCCChHHHHHHHHHhHHHHhhhCh---hhhHHHHHH---HHHHHcCCCcHHHHHHHHHHHHHHHH
Q 009975          329 SQSLLP---AIVELAEDRHWRVRLAIIEYIPLLASQLGV---GFFDDKLGA---LCMQWLQDKVYSIRDAAANNLKRLAE  399 (521)
Q Consensus       329 ~~~~~~---~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~---~l~~~l~d~~~~vr~~a~~~l~~l~~  399 (521)
                      ...+++   .+..+..+.+..+|.++...++.+++..|.   +.|.+.+..   .+.-.++|+++.|-.++-..    ..
T Consensus       337 ~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~ACr~~----~~  412 (533)
T KOG2032|consen  337 ESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVARACRSE----LR  412 (533)
T ss_pred             hhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHHHHHHH----HH
Confidence            344444   445677899999999999999999988875   344443332   22334689999875543333    33


Q ss_pred             HhCHHHHHhhhHHHHHhhhcCcc-hHHHHHHHHHHHHhhcccChHHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhh
Q 009975          400 EFGPEWAMQHITPQVLEMINNPH-YLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPI  478 (521)
Q Consensus       400 ~~~~~~~~~~l~~~l~~~l~~~~-~~~r~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~  478 (521)
                      ..++....+.+-..+.+.+ +.. .+.+.-.-.++..+..... + ....+.......++..-+.||.++..--+....+
T Consensus       413 ~c~p~l~rke~~~~~q~~l-d~~~~~~q~Fyn~~c~~L~~i~~-d-~l~~~~t~~~~~f~sswe~vr~aavl~t~~~vd~  489 (533)
T KOG2032|consen  413 TCYPNLVRKELYHLFQESL-DTDMARFQAFYNQWCIQLNHIHP-D-ILMLLLTEDQHIFSSSWEQVREAAVLKTTRSVDS  489 (533)
T ss_pred             hcCchhHHHHHHHHHhhhh-HHhHHHHHHHHHHHHHHHhhhCH-H-HHHHHHHhchhheecchHHHHHHHHHHHHHHHHH
Confidence            3343333333333333333 222 1222222222222222111 1 1222333334445555558888887777776666


Q ss_pred             hchHH----HHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 009975          479 VDQSM----VEKTIRPCLVELTEDPDVDVRFFATQAIQSIDH  516 (521)
Q Consensus       479 ~~~~~----~~~~~~~~l~~l~~D~~~~vr~~a~~al~~l~~  516 (521)
                      +.++.    ....+...+..+..|+-++|+..+.+|++.+..
T Consensus       490 l~~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~~  531 (533)
T KOG2032|consen  490 LVRAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLSV  531 (533)
T ss_pred             hHHHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHhh
Confidence            55442    236677788889999999999999999998765

>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.81  E-value=0.0001  Score=72.54  Aligned_cols=456  Identities=15%  Similarity=0.133  Sum_probs=243.5

Q ss_pred             hhhHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHHHhHHHHHHHhhcCC-CCcchhhhhhhhhhhcC-----------
Q 009975           21 LLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGE-WFTARVSACGLFHIAYP-----------   88 (521)
Q Consensus        21 l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~p~i~~~~~~~-~~~~r~~~~~~~~~~~~-----------   88 (521)
                      +...|.+-+ ++|+.+|..+.++|......-+      +-+.++.-..+++ +...|.+|...+....+           
T Consensus         7 l~~~l~qTl-~pdps~rk~aEr~L~~~e~q~~------y~l~lL~Lv~~~~~d~~~r~aaav~fKN~iKr~W~~~~~~~~   79 (960)
T KOG1992|consen    7 LANYLLQTL-SPDPSVRKPAERALRSLEGQQN------YPLLLLNLVANGQQDPQIRVAAAVYFKNYIKRNWIPAEDSPI   79 (960)
T ss_pred             HHHHHHhcC-CCCCccCchHHHHHHHhccCCC------chHHHHHHHhccCcChhHHHHHHHHHHHHHHhccCcCCCCcc
Confidence            344444433 4789999999999988766522      2222222222322 45677776655544332           


Q ss_pred             CCChHHHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcC
Q 009975           89 SAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLE  168 (521)
Q Consensus        89 ~~~~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~  168 (521)
                      .+.+..+..+...+..+.-+....++....+++.-+++. .-+..|+.++|.+..-.+..+..+-.+...+-..+.+.+.
T Consensus        80 ~i~~~~~e~ikslIv~lMl~s~~~iQ~qlseal~~Ig~~-DFP~kWptLl~dL~~~ls~~D~~~~~gVL~tahsiFkr~R  158 (960)
T KOG1992|consen   80 KIIEEDREQIKSLIVTLMLSSPFNIQKQLSEALSLIGKR-DFPDKWPTLLPDLVARLSSGDFNVINGVLVTAHSIFKRYR  158 (960)
T ss_pred             ccchhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhcc-ccchhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcC
Confidence            122335677788888887777788999988888887753 2245789999998888887777666666666666666654


Q ss_pred             hhhhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhc--CCChHH-------HHHHHHHhHH
Q 009975          169 PQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLL--RDNEAE-------VRIAAAGKVT  239 (521)
Q Consensus       169 ~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l--~d~~~~-------vr~~a~~~l~  239 (521)
                      .+-..+.+.--+..               ++..++..+      ..++....++.  .+++..       +....++.+.
T Consensus       159 ~efrSdaL~~EIK~---------------vLd~f~~Pl------t~Lf~~t~~l~~~~~~~~~~l~~lf~vlll~~klfy  217 (960)
T KOG1992|consen  159 PEFRSDALWLEIKL---------------VLDRFAEPL------TDLFRKTMELIQRHANDAAALNILFGVLLLICKLFY  217 (960)
T ss_pred             cccccHHHHHHHHH---------------HHHhhHhHH------HHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHH
Confidence            43111111111111               111111100      00111111111  011111       0011111111


Q ss_pred             HHHhh-hCH--HHHHHhhhHHHHHhccCCc-------------HHHHHHHHHHHHccccccChHH--HHHhHHHHHHHhh
Q 009975          240 KFCRI-LNP--ELAIQHILPCVKELSSDSS-------------QHVRSALASVIMGMAPLLGKDA--TIEQLLPIFLSLL  301 (521)
Q Consensus       240 ~l~~~-~~~--~~~~~~~~~~l~~~~~d~~-------------~~vr~~~~~~l~~i~~~~~~~~--~~~~l~~~l~~~l  301 (521)
                      .+... +++  ++-.+..++.+.+++...+             ..+|...++.+.-.+....++.  +..+++...-.++
T Consensus       218 sLn~QDiPEFFEdnm~~wM~~F~k~l~~~~p~le~~~ee~~~l~~lka~ICEi~~LY~~kYeEef~~fl~~fv~~~W~LL  297 (960)
T KOG1992|consen  218 SLNFQDIPEFFEDNMKTWMGAFHKLLTYDNPLLESDEEEATVLDKLKAQICEIFNLYATKYEEEFQPFLPDFVTATWNLL  297 (960)
T ss_pred             hhhcccchHHHHhhHHHHHHHHHHHHhccCcccccCcccccHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHH
Confidence            11000 010  1123344555555443111             2567777777766655444432  1223333333445


Q ss_pred             cCCCh-----HHHHHHHHHHHHhhhhhchhhH--hhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChhhhHHHHHHH
Q 009975          302 KDEFP-----DVRLNIISKLDQVNQVIGIDLL--SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGAL  374 (521)
Q Consensus       302 ~d~~~-----~vr~~a~~~l~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~  374 (521)
                      .+-.+     ....+|++.|..+++.-....+  .+.++..+.+..-=++...|..-            .+.|.+.-+..
T Consensus       298 ~~~s~~~kyD~Lvs~Al~FLt~V~~r~~y~~~F~~~~vl~~i~e~VvlpN~~lR~eD------------eElFED~pleY  365 (960)
T KOG1992|consen  298 VSTSPDTKYDYLVSKALQFLTSVSRRPHYAELFEGENVLAQICEKVVLPNLILREED------------EELFEDNPLEY  365 (960)
T ss_pred             HhcCCCccHHHHHHHHHHHHHHHHhhhhhHhhhcchHHHHHHHHhhcccccccchhh------------HHHhccCHHHH
Confidence            44433     3345555666665543211100  12333333333333333333322            22233333444


Q ss_pred             HHHHcCCCcHH-HHHHHHHHHHHHHHHhCHHH---HHhhhHHHHHhhhcC--cchHHHHHHHHHHHHhhccc-----C--
Q 009975          375 CMQWLQDKVYS-IRDAAANNLKRLAEEFGPEW---AMQHITPQVLEMINN--PHYLYRMTILRAISLLAPVM-----G--  441 (521)
Q Consensus       375 l~~~l~d~~~~-vr~~a~~~l~~l~~~~~~~~---~~~~l~~~l~~~l~~--~~~~~r~~a~~~l~~l~~~~-----~--  441 (521)
                      +-+.++-.+-+ =|++|+..++.+++.+....   +...+-..+.++.++  .||..+..++..+.+++-..     |  
T Consensus       366 iRRDlEGsDvdTRRR~a~dlvrgL~~~fe~~vt~v~~~~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvt  445 (960)
T KOG1992|consen  366 IRRDLEGSDVDTRRRAAIDLVRGLCKNFEGQVTGVFSSEVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVT  445 (960)
T ss_pred             HHHhcccCCcchhHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhccCCCccccccchhhhhhHHHHhhcchhhccee
Confidence            44555544444 46788899999998874321   111111222233444  47999999999999988532     1  


Q ss_pred             --------hHHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchHHHHhhHHHHHHHhcCCCCccHHHHHHHHHHH
Q 009975          442 --------SEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQS  513 (521)
Q Consensus       442 --------~~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~~~~~~~~l~~l~~D~~~~vr~~a~~al~~  513 (521)
                              .++|...++|.+.+--..+.|-+|-.+++-+..+-..++++.. -.++|.+.+.+.-+...|...|+.+++.
T Consensus       446 stn~lvdv~~Ff~~~ilp~L~s~~vn~~pilka~aIKy~~~FR~ql~~~~l-m~~~p~li~~L~a~s~vvhsYAA~aiEk  524 (960)
T KOG1992|consen  446 STNELVDVVDFFANQILPDLLSPNVNEFPILKADAIKYIYTFRNQLGKEHL-MALLPRLIRFLEAESRVVHSYAAIAIEK  524 (960)
T ss_pred             eccccccHHHHHHHHhhHHhccCccccccchhhcccceeeeecccCChHHH-HHHHHHHHHhccCcchHHHHHHHHHHHh
Confidence                    2456677788777755567888888888877777677666554 5678888888888899999999999998


Q ss_pred             HHHhh
Q 009975          514 IDHVM  518 (521)
Q Consensus       514 l~~~~  518 (521)
                      +-...
T Consensus       525 il~vr  529 (960)
T KOG1992|consen  525 LLTVR  529 (960)
T ss_pred             ccccc
Confidence            76543

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.79  E-value=0.00011  Score=71.56  Aligned_cols=354  Identities=11%  Similarity=0.100  Sum_probs=206.4

Q ss_pred             HHHHHhhcCCChhHHHHHHHHHHHHhhhcChhhhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCccccchHHH
Q 009975          139 SIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPA  218 (521)
Q Consensus       139 ~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~  218 (521)
                      ..+.+=++.+++.+|....+.+..+-    ..+....++|.+...+++.++.||+.|.-++..|-+.+..-  .++.-..
T Consensus       102 na~RkDLQHPNEyiRG~TLRFLckLk----E~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~~~L--~pDapeL  175 (948)
T KOG1058|consen  102 NAYRKDLQHPNEYIRGSTLRFLCKLK----EPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFEHL--IPDAPEL  175 (948)
T ss_pred             HHHhhhccCchHhhcchhhhhhhhcC----cHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhhhhh--cCChHHH
Confidence            34445567789999998888777653    33466779999999999999999999999998887653221  1222233


Q ss_pred             HHHhc-CCChHHHHHHHHHhHHHHHhhhCHHHHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccChHHHHHhHHHHH
Q 009975          219 YVRLL-RDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIF  297 (521)
Q Consensus       219 l~~~l-~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l  297 (521)
                      +..++ .+.++..+..|.-.|..    .+++...+++...+.+ ..+-+.......++.+...+..-+  ......+..+
T Consensus       176 i~~fL~~e~DpsCkRNAFi~L~~----~D~ErAl~Yl~~~idq-i~~~~~~LqlViVE~Irkv~~~~p--~~~~~~i~~i  248 (948)
T KOG1058|consen  176 IESFLLTEQDPSCKRNAFLMLFT----TDPERALNYLLSNIDQ-IPSFNDSLQLVIVELIRKVCLANP--AEKARYIRCI  248 (948)
T ss_pred             HHHHHHhccCchhHHHHHHHHHh----cCHHHHHHHHHhhHhh-ccCccHHHHHHHHHHHHHHHhcCH--HHhhHHHHHH
Confidence            33332 45566777766654433    3444433333333322 223334455556666655543111  1234567788


Q ss_pred             HHhhcCCChHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHh-cCCChHHHHHHHHHhHHHHhhhChhhhHHHHHHHHH
Q 009975          298 LSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELA-EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCM  376 (521)
Q Consensus       298 ~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~  376 (521)
                      ..++...++.|+-.|+.++-.+...  +..+ ...-..+.+++ +.++-.++.-.+.-+..+. . +.+...+.+.--++
T Consensus       249 ~~lL~stssaV~fEaa~tlv~lS~~--p~al-k~Aa~~~i~l~~kesdnnvklIvldrl~~l~-~-~~~~il~~l~mDvL  323 (948)
T KOG1058|consen  249 YNLLSSTSSAVIFEAAGTLVTLSND--PTAL-KAAASTYIDLLVKESDNNVKLIVLDRLSELK-A-LHEKILQGLIMDVL  323 (948)
T ss_pred             HHHHhcCCchhhhhhcceEEEccCC--HHHH-HHHHHHHHHHHHhccCcchhhhhHHHHHHHh-h-hhHHHHHHHHHHHH
Confidence            8888888999988877776655432  1111 22233344433 2233344444444444444 1 22222333444556


Q ss_pred             HHcCCCcHHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhh---hcCcchHHHHHHHHHHHHhhcccChHHHhhcHHHHH
Q 009975          377 QWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEM---INNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVV  453 (521)
Q Consensus       377 ~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~---l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~il~~l  453 (521)
                      ..+..++-+||..++...-.++..-..+.+...+-..+.+.   -.+.+-..|+..+.++..++-.++.  +...++|.+
T Consensus       324 rvLss~dldvr~Ktldi~ldLvssrNvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~--~aatvV~~l  401 (948)
T KOG1058|consen  324 RVLSSPDLDVRSKTLDIALDLVSSRNVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPE--VAATVVSLL  401 (948)
T ss_pred             HHcCcccccHHHHHHHHHHhhhhhccHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChH--HHHHHHHHH
Confidence            78899999999998887666655443332222222223222   1345667899999999888875553  457789999


Q ss_pred             HhhcCCCCchHHHHHHHHHHHHHhhhchH--HHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHH
Q 009975          454 INASKDRVPNIKFNVAKVLQSLIPIVDQS--MVEKTIRPCLVELTEDPDVDVRFFATQAIQSID  515 (521)
Q Consensus       454 ~~~l~d~~~~VR~~a~~~l~~~~~~~~~~--~~~~~~~~~l~~l~~D~~~~vr~~a~~al~~l~  515 (521)
                      +..+.|.++.--...+..+....+.++.=  .....++..   +-.=+...+-+.|.|-+++-+
T Consensus       402 l~fisD~N~~aas~vl~FvrE~iek~p~Lr~~ii~~l~~~---~~~irS~ki~rgalwi~GeYc  462 (948)
T KOG1058|consen  402 LDFISDSNEAAASDVLMFVREAIEKFPNLRASIIEKLLET---FPQIRSSKICRGALWILGEYC  462 (948)
T ss_pred             HHHhccCCHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHh---hhhhcccccchhHHHHHHHHH
Confidence            99999998876666666666666655421  111222222   223345555666666665433

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=98.77  E-value=1.1e-07  Score=69.68  Aligned_cols=83  Identities=22%  Similarity=0.346  Sum_probs=66.4

Q ss_pred             HHHHHHHHHHhhcccChH--HHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchHHH--HhhHHHHHHHhcCCCCc
Q 009975          426 RMTILRAISLLAPVMGSE--ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMV--EKTIRPCLVELTEDPDV  501 (521)
Q Consensus       426 r~~a~~~l~~l~~~~~~~--~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~--~~~~~~~l~~l~~D~~~  501 (521)
                      |.+++.++..++..++..  .+.+.++|.++.++.|+++.||..|+++|..+.+....+..  ...+++.|.++..|+|+
T Consensus         3 R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~   82 (97)
T PF12755_consen    3 RKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDE   82 (97)
T ss_pred             hhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCch
Confidence            667777777777666654  35688899999999999999999999999999887765543  37788888899999999


Q ss_pred             cHHHHHH
Q 009975          502 DVRFFAT  508 (521)
Q Consensus       502 ~vr~~a~  508 (521)
                      +||..|.
T Consensus        83 ~Vr~~a~   89 (97)
T PF12755_consen   83 NVRSAAE   89 (97)
T ss_pred             hHHHHHH
Confidence            9988773

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.75  E-value=4.2e-05  Score=74.40  Aligned_cols=213  Identities=14%  Similarity=0.140  Sum_probs=122.7

Q ss_pred             cchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhhhHHHHHhccC-CcHHHHHHHHHHHHccccccChHHHHH
Q 009975          213 MDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSD-SSQHVRSALASVIMGMAPLLGKDATIE  291 (521)
Q Consensus       213 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d-~~~~vr~~~~~~l~~i~~~~~~~~~~~  291 (521)
                      ...+..+.+++...++.|+..|..++..+...  +.. ....-..+.+++.+ ++-.++.....-+..+.  -+.+...+
T Consensus       242 ~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~--p~a-lk~Aa~~~i~l~~kesdnnvklIvldrl~~l~--~~~~~il~  316 (948)
T KOG1058|consen  242 ARYIRCIYNLLSSTSSAVIFEAAGTLVTLSND--PTA-LKAAASTYIDLLVKESDNNVKLIVLDRLSELK--ALHEKILQ  316 (948)
T ss_pred             hHHHHHHHHHHhcCCchhhhhhcceEEEccCC--HHH-HHHHHHHHHHHHHhccCcchhhhhHHHHHHHh--hhhHHHHH
Confidence            34566666677666777776666555544331  221 12222222333221 22234444444444443  12233455


Q ss_pred             hHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHh-------cCCChHHHHHHHHHhHHHHhhhCh
Q 009975          292 QLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELA-------EDRHWRVRLAIIEYIPLLASQLGV  364 (521)
Q Consensus       292 ~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~-------~~~~~~vr~~~~~~l~~l~~~~~~  364 (521)
                      .++--++..+..++-+||..++...-.+...-..    +.++..+..-+       .+.+...|...++.++..+-.++.
T Consensus       317 ~l~mDvLrvLss~dldvr~Ktldi~ldLvssrNv----ediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~  392 (948)
T KOG1058|consen  317 GLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNV----EDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPE  392 (948)
T ss_pred             HHHHHHHHHcCcccccHHHHHHHHHHhhhhhccH----HHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChH
Confidence            5666677888999999999998877666654332    33444443311       345667899999999988877664


Q ss_pred             hhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhh-cCcchHHHHHHHHHHHHhhc
Q 009975          365 GFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMI-NNPHYLYRMTILRAISLLAP  438 (521)
Q Consensus       365 ~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l-~~~~~~~r~~a~~~l~~l~~  438 (521)
                        +...++|.++..+.|.++..-...+..+....+.+..  ....++..+.+.+ .-....+-..+++.+|.-+.
T Consensus       393 --~aatvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~--Lr~~ii~~l~~~~~~irS~ki~rgalwi~GeYce  463 (948)
T KOG1058|consen  393 --VAATVVSLLLDFISDSNEAAASDVLMFVREAIEKFPN--LRASIIEKLLETFPQIRSSKICRGALWILGEYCE  463 (948)
T ss_pred             --HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCch--HHHHHHHHHHHhhhhhcccccchhHHHHHHHHHh
Confidence              3577999999999999998777777777777766542  2223333333322 11223333456666665554

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=98.73  E-value=5e-05  Score=76.34  Aligned_cols=354  Identities=15%  Similarity=0.174  Sum_probs=215.8

Q ss_pred             HHHHHHHHHhhhcChh--hhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhC--CCccccchHHHHHHhcCCChHHH
Q 009975          155 LAVEGCAALGKLLEPQ--DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG--PEPTRMDLVPAYVRLLRDNEAEV  230 (521)
Q Consensus       155 ~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~--~~~~~~~l~~~l~~~l~d~~~~v  230 (521)
                      .+..+|.++++...-+  .....+++.+.+.++..+..+...++..+.+++-...  .......+++.+.+++..++..+
T Consensus       268 v~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~~l  347 (708)
T PF05804_consen  268 VAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSENEDL  347 (708)
T ss_pred             HHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCHHH
Confidence            5567788888775432  3456688999999998998888888888877763211  22334679999999999988899


Q ss_pred             HHHHHHhHHHHHhhhCH--HHHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccCh--HHHHHhHHHHHHHhhc-CCC
Q 009975          231 RIAAAGKVTKFCRILNP--ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK--DATIEQLLPIFLSLLK-DEF  305 (521)
Q Consensus       231 r~~a~~~l~~l~~~~~~--~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~--~~~~~~l~~~l~~~l~-d~~  305 (521)
                      +..++..|..++..-..  ......++|.+..++.+++  .+..+...+..++..-..  .....+.+|.+.+++- .++
T Consensus       348 ~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~~--~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~~~  425 (708)
T PF05804_consen  348 VNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDPN--FREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLENSE  425 (708)
T ss_pred             HHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCCc--hHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhCCC
Confidence            99999999887664322  1233447888999998775  445566667766642111  1223456788777654 355


Q ss_pred             hHHHHHHHHHHHHhhhhhch-hh-HhhhHHHHHHHH-hcCCChHHHHHHHHHhHHHHhhhCh--hhhHHHHHHHHHHHcC
Q 009975          306 PDVRLNIISKLDQVNQVIGI-DL-LSQSLLPAIVEL-AEDRHWRVRLAIIEYIPLLASQLGV--GFFDDKLGALCMQWLQ  380 (521)
Q Consensus       306 ~~vr~~a~~~l~~~~~~~~~-~~-~~~~~~~~l~~~-~~~~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~  380 (521)
                      +++...++..+-.++..-.. +. ....-++.+.+. .+..+    ...++.+..++.+-|+  ..|.+++.|++-....
T Consensus       426 ~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D----~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~  501 (708)
T PF05804_consen  426 EEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRD----PLLLKLIRNISQHDGPLKELFVDFIGDLAKIVSS  501 (708)
T ss_pred             ccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhccc----HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhc
Confidence            55655444443333221110 00 012234444443 22222    2234455555555433  2344555555443333


Q ss_pred             CCcHHHHHHHHHHHHHHHHHh--CHHH---H-HhhhHHHHHhhhcCc--chHHHHHHHHHHHHhhcc--cChHHHhhcHH
Q 009975          381 DKVYSIRDAAANNLKRLAEEF--GPEW---A-MQHITPQVLEMINNP--HYLYRMTILRAISLLAPV--MGSEITCSRLL  450 (521)
Q Consensus       381 d~~~~vr~~a~~~l~~l~~~~--~~~~---~-~~~l~~~l~~~l~~~--~~~~r~~a~~~l~~l~~~--~~~~~~~~~il  450 (521)
                      ..+.   ...++++|.+....  +.+|   . ...++|.+.+.+..+  ...+...++.++|.++..  +..-.....++
T Consensus       502 ~~~e---e~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~~~A~lL~~sgli  578 (708)
T PF05804_consen  502 GDSE---EFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDPECAPLLAKSGLI  578 (708)
T ss_pred             CCcH---HHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCHHHHHHHHhCChH
Confidence            3344   34566666665432  2222   1 247899999988654  346777888888887742  11222345678


Q ss_pred             HHHHhhcCCC--CchHHHHHHHHHHHHHhhhchH-HH--HhhHHHHHHHhcCCCCccHHHHHHHHHHHHHHh
Q 009975          451 PVVINASKDR--VPNIKFNVAKVLQSLIPIVDQS-MV--EKTIRPCLVELTEDPDVDVRFFATQAIQSIDHV  517 (521)
Q Consensus       451 ~~l~~~l~d~--~~~VR~~a~~~l~~~~~~~~~~-~~--~~~~~~~l~~l~~D~~~~vr~~a~~al~~l~~~  517 (521)
                      +.++.+++..  +.+.-.+.+.++..+..+-... .+  ...+...|..+++|++..||..+-.++.-+.+.
T Consensus       579 ~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~  650 (708)
T PF05804_consen  579 PTLIELLNAKQEDDEIVLQILYVFYQLLFHEETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEY  650 (708)
T ss_pred             HHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence            8888877654  3455566667777766553222 11  155777888899999999999999999887753

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=98.73  E-value=1.7e-05  Score=73.06  Aligned_cols=286  Identities=14%  Similarity=0.146  Sum_probs=169.4

Q ss_pred             HHHHHHHHHhHHHHHhhhCHH-HHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccChHH----HH-HhHH-HHHHHh
Q 009975          228 AEVRIAAAGKVTKFCRILNPE-LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA----TI-EQLL-PIFLSL  300 (521)
Q Consensus       228 ~~vr~~a~~~l~~l~~~~~~~-~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~----~~-~~l~-~~l~~~  300 (521)
                      ..+|..+...|..++.+++.- ...-++.-.+.....+..+.++..++.++..+....+.+.    .. +... |....+
T Consensus       269 s~~rle~~qvl~~~a~~~~~~~~~~~~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~~  348 (728)
T KOG4535|consen  269 SPMRLEALQVLTLLARYFSMTQAYLMELGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTMM  348 (728)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHHH
Confidence            357888888888888887653 2223344445555677888888888888877765544211    11 1111 111222


Q ss_pred             h---------cCCChHHHHHHHHHHHHhhhhhc--hhhHhhhHHHHHHHHhcC-CChHHHHHHHHHhHHHHhhhChh---
Q 009975          301 L---------KDEFPDVRLNIISKLDQVNQVIG--IDLLSQSLLPAIVELAED-RHWRVRLAIIEYIPLLASQLGVG---  365 (521)
Q Consensus       301 l---------~d~~~~vr~~a~~~l~~~~~~~~--~~~~~~~~~~~l~~~~~~-~~~~vr~~~~~~l~~l~~~~~~~---  365 (521)
                      +         ....+.....++.++.++...-.  -..-.....+.|..-..| ++.-+|.+++..+..+.-+-+..   
T Consensus       349 l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~  428 (728)
T KOG4535|consen  349 LNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQDV  428 (728)
T ss_pred             ccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhhH
Confidence            2         12234445666666666644211  111113456666655544 45567777777766554443322   


Q ss_pred             hhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhC-----HHHHHhh----hHHHHHhh--hcC-cchHHHHHHHHHH
Q 009975          366 FFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFG-----PEWAMQH----ITPQVLEM--INN-PHYLYRMTILRAI  433 (521)
Q Consensus       366 ~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~-----~~~~~~~----l~~~l~~~--l~~-~~~~~r~~a~~~l  433 (521)
                      .|...-...+...+.|....+|..++.+++.+...+-     .+.+.+.    ++..+...  ..+ .++++|..+++++
T Consensus       429 ~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraL  508 (728)
T KOG4535|consen  429 IFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRAL  508 (728)
T ss_pred             HHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHH
Confidence            2233344556677888889999999999999887661     1112222    22222221  122 4689999999999


Q ss_pred             HHhhcccChHH--HhhcHHHH-----HHhhcCCCCchHHHHHHHHHHHHHhhh----chHHHHhhHHHHHHHhcCC-CCc
Q 009975          434 SLLAPVMGSEI--TCSRLLPV-----VINASKDRVPNIKFNVAKVLQSLIPIV----DQSMVEKTIRPCLVELTED-PDV  501 (521)
Q Consensus       434 ~~l~~~~~~~~--~~~~il~~-----l~~~l~d~~~~VR~~a~~~l~~~~~~~----~~~~~~~~~~~~l~~l~~D-~~~  501 (521)
                      +.+.+.+..-.  ....++..     +..-.......||.+++.+++++.++-    ........++|.|..|..| .+-
T Consensus       509 gnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NF  588 (728)
T KOG4535|consen  509 GNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNF  588 (728)
T ss_pred             hhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhccc
Confidence            99987544211  11122222     222233446789999999999998752    2344568888988887655 788


Q ss_pred             cHHHHHHHHHHH
Q 009975          502 DVRFFATQAIQS  513 (521)
Q Consensus       502 ~vr~~a~~al~~  513 (521)
                      .||..|+.++..
T Consensus       589 KVRi~AA~aL~v  600 (728)
T KOG4535|consen  589 KVRIRAAAALSV  600 (728)
T ss_pred             eEeehhhhhhcC
Confidence            999999998864

>KOG2032 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.69  E-value=9.5e-05  Score=68.69  Aligned_cols=254  Identities=15%  Similarity=0.073  Sum_probs=150.2

Q ss_pred             HHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcChhh--hhhh-hHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCcc
Q 009975          135 TDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQD--CVAH-ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPT  211 (521)
Q Consensus       135 ~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~-l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~  211 (521)
                      ..++..+..-..|++..+|..|+..|++.++..+.+.  ..+. +..++..+.++.+..|...++.++..+.........
T Consensus       257 ~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l  336 (533)
T KOG2032|consen  257 GSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDL  336 (533)
T ss_pred             HHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcch
Confidence            3344444555678888999999999999999976652  2223 444556677778888999999998888776665554


Q ss_pred             ccchHHH---HHHhcCCChHHHHHHHHHhHHHHHhhhCHH---HHHHhhhHH---HHHhccCCcHHHHHHHHHHHHcccc
Q 009975          212 RMDLVPA---YVRLLRDNEAEVRIAAAGKVTKFCRILNPE---LAIQHILPC---VKELSSDSSQHVRSALASVIMGMAP  282 (521)
Q Consensus       212 ~~~l~~~---l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~~~~---l~~~~~d~~~~vr~~~~~~l~~i~~  282 (521)
                      .+.++++   +.++..|+++.+|.++...++.++...|..   .+.+.+...   +.-.+.|+++.+-.++-..+....+
T Consensus       337 ~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~ACr~~~~~c~p  416 (533)
T KOG2032|consen  337 ESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVARACRSELRTCYP  416 (533)
T ss_pred             hhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHHHHHHHHHhcCc
Confidence            4444444   455778999999999999999999987542   333333322   2234588999876655444444333


Q ss_pred             ccChHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHH----HhcCCChHHHHHHHHHhHHH
Q 009975          283 LLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVE----LAEDRHWRVRLAIIEYIPLL  358 (521)
Q Consensus       283 ~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~vr~~~~~~l~~l  358 (521)
                      .++    .+.+-..+.+.+ |.+-. |-.+  ....++..+.+..  ..+.-.+..    +++...+.+|.++...-+.+
T Consensus       417 ~l~----rke~~~~~q~~l-d~~~~-~~q~--Fyn~~c~~L~~i~--~d~l~~~~t~~~~~f~sswe~vr~aavl~t~~~  486 (533)
T KOG2032|consen  417 NLV----RKELYHLFQESL-DTDMA-RFQA--FYNQWCIQLNHIH--PDILMLLLTEDQHIFSSSWEQVREAAVLKTTRS  486 (533)
T ss_pred             hhH----HHHHHHHHhhhh-HHhHH-HHHH--HHHHHHHHHhhhC--HHHHHHHHHhchhheecchHHHHHHHHHHHHHH
Confidence            333    333333444333 22111 1111  1111122111110  111111111    22333337888777766666


Q ss_pred             HhhhChhh----hHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Q 009975          359 ASQLGVGF----FDDKLGALCMQWLQDKVYSIRDAAANNLKRLA  398 (521)
Q Consensus       359 ~~~~~~~~----~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~  398 (521)
                      ..++.+..    ....+...+-.+..|+-++|+..+.++++.+.
T Consensus       487 vd~l~~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~  530 (533)
T KOG2032|consen  487 VDSLVRAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLS  530 (533)
T ss_pred             HHHhHHHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHh
Confidence            55554432    22345556667788999999999998887764

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]

Probab=98.67  E-value=8.2e-06  Score=69.32  Aligned_cols=221  Identities=19%  Similarity=0.200  Sum_probs=142.7

Q ss_pred             hHHHHHhccCCcHHHHHHHHHHHHccccccChHHHHHhHHHHHHHhhcCC--ChHHHHHHHHHHHHhhhhhchhhHhhhH
Q 009975          255 LPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDE--FPDVRLNIISKLDQVNQVIGIDLLSQSL  332 (521)
Q Consensus       255 ~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~--~~~vr~~a~~~l~~~~~~~~~~~~~~~~  332 (521)
                      +..+.+...|.+.-.+...+.++++..        .++-+|.+...+.|.  .+.||..|..+|+.+..        +..
T Consensus        38 i~~i~ka~~d~s~llkhe~ay~LgQ~~--------~~~Av~~l~~vl~desq~pmvRhEAaealga~~~--------~~~  101 (289)
T KOG0567|consen   38 IKAITKAFIDDSALLKHELAYVLGQMQ--------DEDAVPVLVEVLLDESQEPMVRHEAAEALGAIGD--------PES  101 (289)
T ss_pred             HHHHHHhcccchhhhccchhhhhhhhc--------cchhhHHHHHHhcccccchHHHHHHHHHHHhhcc--------hhh
Confidence            344455556666667777777777765        456677777777654  57889999999988763        567


Q ss_pred             HHHHHHHhcCCChHHHHHHHHHhHHHHhhh--Ch----hhhHH-------H--HHHHHHHHcCCCcHH--HHHHHHHHHH
Q 009975          333 LPAIVELAEDRHWRVRLAIIEYIPLLASQL--GV----GFFDD-------K--LGALCMQWLQDKVYS--IRDAAANNLK  395 (521)
Q Consensus       333 ~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~--~~----~~~~~-------~--l~~~l~~~l~d~~~~--vr~~a~~~l~  395 (521)
                      .+.+.++.+|+...||..+..++..+--.-  +.    ..+.+       .  -++-+-..+.|.+..  -|..|+-.|.
T Consensus       102 ~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LR  181 (289)
T KOG0567|consen  102 LEILTKYIKDPCKEVRETCELAIKRLEWKDIIDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLR  181 (289)
T ss_pred             HHHHHHHhcCCccccchHHHHHHHHHHHhhccccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhh
Confidence            788888888888888887655554442111  11    01100       0  011111111221111  0111211111


Q ss_pred             HHHHHhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChHHHhhcHHHHHHhhcCCC--CchHHHHHHHHHH
Q 009975          396 RLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDR--VPNIKFNVAKVLQ  473 (521)
Q Consensus       396 ~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~--~~~VR~~a~~~l~  473 (521)
                          ..|    .+.-+..+.+.+.+++.-.|..+..++|.+-.        +.-+|.+.+.|.|.  ++-||-.|+++|+
T Consensus       182 ----n~g----~EeaI~al~~~l~~~SalfrhEvAfVfGQl~s--------~~ai~~L~k~L~d~~E~pMVRhEaAeALG  245 (289)
T KOG0567|consen  182 ----NIG----TEEAINALIDGLADDSALFRHEVAFVFGQLQS--------PAAIPSLIKVLLDETEHPMVRHEAAEALG  245 (289)
T ss_pred             ----ccC----cHHHHHHHHHhcccchHHHHHHHHHHHhhccc--------hhhhHHHHHHHHhhhcchHHHHHHHHHHH
Confidence                112    13455667777788888999999999988864        34566777776664  7889999999999


Q ss_pred             HHHhhhchHHHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHH
Q 009975          474 SLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSID  515 (521)
Q Consensus       474 ~~~~~~~~~~~~~~~~~~l~~l~~D~~~~vr~~a~~al~~l~  515 (521)
                      .++.        +..++.|+++++|+++-||..+.-++..+.
T Consensus       246 aIa~--------e~~~~vL~e~~~D~~~vv~esc~valdm~e  279 (289)
T KOG0567|consen  246 AIAD--------EDCVEVLKEYLGDEERVVRESCEVALDMLE  279 (289)
T ss_pred             hhcC--------HHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence            9885        577889999999999999999998887654

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=98.64  E-value=7.4e-05  Score=75.18  Aligned_cols=360  Identities=15%  Similarity=0.141  Sum_probs=208.3

Q ss_pred             CChHHHHHHHHhHHHHHHhhCc--hhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcCh--hhhhhhhHHHHHHhc
Q 009975          109 DMPMVRRSAASNLGKFAATVEP--AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP--QDCVAHILPVIVNFS  184 (521)
Q Consensus       109 ~~~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~~  184 (521)
                      .+...| .+...|.+++....-  .-....+++.+.++++.++..+...++.+|..++-+-..  ......+++.+.+++
T Consensus       262 QeqLlr-v~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl  340 (708)
T PF05804_consen  262 QEQLLR-VAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLL  340 (708)
T ss_pred             HHHHHH-HHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHh
Confidence            333344 444556666644322  224556788888888888888999898888888755322  223456889999999


Q ss_pred             CCCChHHHHHHHHHHHHHHHHh--CCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHH-HH-HHhhhHHHHH
Q 009975          185 QDKSWRVRYMVANQLYELCEAV--GPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE-LA-IQHILPCVKE  260 (521)
Q Consensus       185 ~d~~~~vR~~~~~~l~~i~~~~--~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~-~~-~~~~~~~l~~  260 (521)
                      ..++...+..+...|..++..-  ........++|.+..++.|++  .+..++..|..++..-... .+ ....+|.+.+
T Consensus       341 ~s~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~~--~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~  418 (708)
T PF05804_consen  341 PSENEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDPN--FREVALKILYNLSMDDEARSMFAYTDCIPQLMQ  418 (708)
T ss_pred             cCCCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCCc--hHHHHHHHHHHhccCHhhHHHHhhcchHHHHHH
Confidence            9999999999999888876321  123344678999999998864  5566777777665532111 11 1235666655


Q ss_pred             hc-cCCcHHHHHHHHHHHHccccccChH-HH-HHhHHHHHHHh-hcCCChHHHHHHHHHHHHhhhhhchhh-HhhhHHHH
Q 009975          261 LS-SDSSQHVRSALASVIMGMAPLLGKD-AT-IEQLLPIFLSL-LKDEFPDVRLNIISKLDQVNQVIGIDL-LSQSLLPA  335 (521)
Q Consensus       261 ~~-~d~~~~vr~~~~~~l~~i~~~~~~~-~~-~~~l~~~l~~~-l~d~~~~vr~~a~~~l~~~~~~~~~~~-~~~~~~~~  335 (521)
                      ++ ..++..+...++..+.+++..-... .. ...-++.++.. ++..+ .+-.   ..+-.+...-|+.. .....+..
T Consensus       419 ~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D-~lLl---KlIRNiS~h~~~~k~~f~~~i~~  494 (708)
T PF05804_consen  419 MLLENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRD-PLLL---KLIRNISQHDGPLKELFVDFIGD  494 (708)
T ss_pred             HHHhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhccc-HHHH---HHHHHHHhcCchHHHHHHHHHHH
Confidence            44 4455666655555555554322111 11 11223433333 23222 2222   22233333322111 11222333


Q ss_pred             HHHHhcC-CChHHHHHHHHHhHHHHhhhCh----hhhH--HHHHHHHHHHcCCC--cHHHHHHHHHHHHHHHHHhC--HH
Q 009975          336 IVELAED-RHWRVRLAIIEYIPLLASQLGV----GFFD--DKLGALCMQWLQDK--VYSIRDAAANNLKRLAEEFG--PE  404 (521)
Q Consensus       336 l~~~~~~-~~~~vr~~~~~~l~~l~~~~~~----~~~~--~~l~~~l~~~l~d~--~~~vr~~a~~~l~~l~~~~~--~~  404 (521)
                      +...+.. .++.   ..+++++.++..--+    ..+.  ..++|.+...+...  .+++...++..+|.++..-.  .-
T Consensus       495 L~~~v~~~~~ee---~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~~~A~l  571 (708)
T PF05804_consen  495 LAKIVSSGDSEE---FVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDPECAPL  571 (708)
T ss_pred             HHHHhhcCCcHH---HHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCHHHHHH
Confidence            3333333 3443   455555555543211    1122  24788888888653  44677777777787764221  11


Q ss_pred             HHHhhhHHHHHhhhcCc--chHHHHHHHHHHHHhhcccCh-HHH--hhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhh
Q 009975          405 WAMQHITPQVLEMINNP--HYLYRMTILRAISLLAPVMGS-EIT--CSRLLPVVINASKDRVPNIKFNVAKVLQSLIPI  478 (521)
Q Consensus       405 ~~~~~l~~~l~~~l~~~--~~~~r~~a~~~l~~l~~~~~~-~~~--~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~  478 (521)
                      .....+++.+.++++..  +...-...+.++..+..+-.. +.+  ...+..+++.++.|+++.||..+-.+|..++..
T Consensus       572 L~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~  650 (708)
T PF05804_consen  572 LAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEY  650 (708)
T ss_pred             HHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence            22456788888877654  345555666777777654222 222  246788999999999999999999999998764

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=98.62  E-value=4.6e-06  Score=81.04  Aligned_cols=234  Identities=15%  Similarity=0.217  Sum_probs=177.9

Q ss_pred             HHHHHHHHHhHHHHHhhhCHHHHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccChHHHHHhHHHHHHHhhc-CCCh
Q 009975          228 AEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLK-DEFP  306 (521)
Q Consensus       228 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~-d~~~  306 (521)
                      +.-+..-.+.|..+...++...+...++|.+...+.+..  ..-...-.+..|+.......+...++|.+...++ ....
T Consensus       287 n~qKs~Flk~Ls~~ip~fp~rv~~~kiLP~L~~el~n~~--~vp~~LP~v~~i~~~~s~~~~~~~~~p~l~pi~~~~~~~  364 (700)
T KOG2137|consen  287 NSQKSSFLKGLSKLIPTFPARVLFQKILPTLVAELVNTK--MVPIVLPLVLLIAEGLSQNEFGPKMLPALKPIYSASDPK  364 (700)
T ss_pred             cHHHHHHHHHHHHhhccCCHHHHHHhhhhHHHHHhcccc--ccccccchhhhhhhccchhhhhhhhhHHHHHHhccCCcc
Confidence            455566777788888888888888899999988774321  2222233334455555666667788999988887 5567


Q ss_pred             HHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChhhhHHHHHHHHHHH-cCCCcHH
Q 009975          307 DVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQW-LQDKVYS  385 (521)
Q Consensus       307 ~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~-l~d~~~~  385 (521)
                      +++...++.+..+.+.+.++.+.+.++|.+....++.+..++..++..++.+++.+......+.++|.+.++ ++..+..
T Consensus       365 ~~~l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~vk~~ilP~l~~l~~~tt~~~  444 (700)
T KOG2137|consen  365 QALLFILENMDLLKEKTPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFVKQAILPRLKNLAFKTTNLY  444 (700)
T ss_pred             cchhhHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHHHHHHHHHhhcchhcccchH
Confidence            888889999999999999999999999999999999999999999999999999999888889999999765 6778999


Q ss_pred             HHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhc--ccChHHHhhcHHHHHHhhcCCCCch
Q 009975          386 IRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAP--VMGSEITCSRLLPVVINASKDRVPN  463 (521)
Q Consensus       386 vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~--~~~~~~~~~~il~~l~~~l~d~~~~  463 (521)
                      |+..++-|++.+++.+......+.+.|.+. ..+.+++.+-...+.+...+.-  ..|.+...+.++|.++.+...+.-.
T Consensus       445 vkvn~L~c~~~l~q~lD~~~v~d~~lpi~~-~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~~~L~  523 (700)
T KOG2137|consen  445 VKVNVLPCLAGLIQRLDKAAVLDELLPILK-CIKTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVAPSLN  523 (700)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HhcCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhccccc
Confidence            999999999999977755444555555444 4455666666666666666553  2233556688899988887766544


Q ss_pred             H
Q 009975          464 I  464 (521)
Q Consensus       464 V  464 (521)
                      +
T Consensus       524 ~  524 (700)
T KOG2137|consen  524 G  524 (700)
T ss_pred             H
Confidence            3

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=98.62  E-value=4.9e-07  Score=66.22  Aligned_cols=89  Identities=17%  Similarity=0.198  Sum_probs=66.9

Q ss_pred             HHHHHHHhHHHHHhhhCHH--HHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccChHH--HHHhHHHHHHHhhcCCC
Q 009975          230 VRIAAAGKVTKFCRILNPE--LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA--TIEQLLPIFLSLLKDEF  305 (521)
Q Consensus       230 vr~~a~~~l~~l~~~~~~~--~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~--~~~~l~~~l~~~l~d~~  305 (521)
                      .|++++.+|..++..++..  .+.+.++|.+...+.|++|+||..+++++.++++..+.+.  ..+++++.+.+++.|++
T Consensus         2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d   81 (97)
T PF12755_consen    2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPD   81 (97)
T ss_pred             chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence            4677777887777777654  4567788888888888899999999888888887766544  25677888888888888


Q ss_pred             hHHHHHHHHHHHHh
Q 009975          306 PDVRLNIISKLDQV  319 (521)
Q Consensus       306 ~~vr~~a~~~l~~~  319 (521)
                      +.||.+| +.+.++
T Consensus        82 ~~Vr~~a-~~Ld~l   94 (97)
T PF12755_consen   82 ENVRSAA-ELLDRL   94 (97)
T ss_pred             hhHHHHH-HHHHHH
Confidence            8888776 444433

>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.61  E-value=0.00043  Score=68.40  Aligned_cols=461  Identities=16%  Similarity=0.138  Sum_probs=237.9

Q ss_pred             HhhhhHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHHHhHHHHHHHhhcCCCCcch----hhhhhhhhhhcCCC-ChH
Q 009975           19 HVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTAR----VSACGLFHIAYPSA-PDI   93 (521)
Q Consensus        19 ~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~p~i~~~~~~~~~~~r----~~~~~~~~~~~~~~-~~~   93 (521)
                      ..+-..+..++-+...++...--+++..+++.--|+. |..++|.+.......++.+-    ..+-.++...-... ++.
T Consensus        87 e~ikslIv~lMl~s~~~iQ~qlseal~~Ig~~DFP~k-WptLl~dL~~~ls~~D~~~~~gVL~tahsiFkr~R~efrSda  165 (960)
T KOG1992|consen   87 EQIKSLIVTLMLSSPFNIQKQLSEALSLIGKRDFPDK-WPTLLPDLVARLSSGDFNVINGVLVTAHSIFKRYRPEFRSDA  165 (960)
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHHHHHhccccchh-hHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcCcccccHH
Confidence            4455566666666667888888888888887654544 78888888666554443333    23333333322111 122


Q ss_pred             HHHHHH-----------HHHH---Hhc--CCCChHHHHHHHHhHHHHHHhhC-------c---hhhHHHHHHHHHHhhcC
Q 009975           94 LKTELR-----------SIYT---QLC--QDDMPMVRRSAASNLGKFAATVE-------P---AHLKTDIMSIFEDLTQD  147 (521)
Q Consensus        94 ~~~~l~-----------~~l~---~l~--~~~~~~vr~~a~~~l~~l~~~~~-------~---~~~~~~l~~~l~~l~~d  147 (521)
                      ...++.           .++.   +++  .+.+...-+.....+--+++.+.       +   +...+..++.+.+++.-
T Consensus       166 L~~EIK~vLd~f~~Plt~Lf~~t~~l~~~~~~~~~~l~~lf~vlll~~klfysLn~QDiPEFFEdnm~~wM~~F~k~l~~  245 (960)
T KOG1992|consen  166 LWLEIKLVLDRFAEPLTDLFRKTMELIQRHANDAAALNILFGVLLLICKLFYSLNFQDIPEFFEDNMKTWMGAFHKLLTY  245 (960)
T ss_pred             HHHHHHHHHHhhHhHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHhhhcccchHHHHhhHHHHHHHHHHHHhc
Confidence            121211           1111   112  12222211112222222222221       1   22345566666666541


Q ss_pred             C---------Ch----hHHHHHHHHHHHHhhhcChh--hhhhhhHHHHHHhcCCCChHHHH-----HHHHHHHHHHHHhC
Q 009975          148 D---------QD----SVRLLAVEGCAALGKLLEPQ--DCVAHILPVIVNFSQDKSWRVRY-----MVANQLYELCEAVG  207 (521)
Q Consensus       148 ~---------~~----~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~d~~~~vR~-----~~~~~l~~i~~~~~  207 (521)
                      +         ..    .+|...|+.+.--+.....+  ...++++.....++.+.++..|+     .+.+-+..+++...
T Consensus       246 ~~p~le~~~ee~~~l~~lka~ICEi~~LY~~kYeEef~~fl~~fv~~~W~LL~~~s~~~kyD~Lvs~Al~FLt~V~~r~~  325 (960)
T KOG1992|consen  246 DNPLLESDEEEATVLDKLKAQICEIFNLYATKYEEEFQPFLPDFVTATWNLLVSTSPDTKYDYLVSKALQFLTSVSRRPH  325 (960)
T ss_pred             cCcccccCcccccHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHhhhh
Confidence            1         11    23555555555444443221  12233444444455443333332     23333443333211


Q ss_pred             -----------------------------CCccccchHHHHHHhcCCCh-HHHHHHHHHhHHHHHhhhCHH---HHHHhh
Q 009975          208 -----------------------------PEPTRMDLVPAYVRLLRDNE-AEVRIAAAGKVTKFCRILNPE---LAIQHI  254 (521)
Q Consensus       208 -----------------------------~~~~~~~l~~~l~~~l~d~~-~~vr~~a~~~l~~l~~~~~~~---~~~~~~  254 (521)
                                                   .+...++-+..+.+-++-.| ..-|.+|+..+..+++.....   .+...+
T Consensus       326 y~~~F~~~~vl~~i~e~VvlpN~~lR~eDeElFED~pleYiRRDlEGsDvdTRRR~a~dlvrgL~~~fe~~vt~v~~~~v  405 (960)
T KOG1992|consen  326 YAELFEGENVLAQICEKVVLPNLILREEDEELFEDNPLEYIRRDLEGSDVDTRRRAAIDLVRGLCKNFEGQVTGVFSSEV  405 (960)
T ss_pred             hHhhhcchHHHHHHHHhhcccccccchhhHHHhccCHHHHHHHhcccCCcchhHHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence                                         11112234444445454333 234678888888888877432   222233


Q ss_pred             hHHHHHhccC--CcHHHHHHHHHHHHccccccC--------------h-HHHHHhHHHHHHHhhcCCChHHHHHHHHHHH
Q 009975          255 LPCVKELSSD--SSQHVRSALASVIMGMAPLLG--------------K-DATIEQLLPIFLSLLKDEFPDVRLNIISKLD  317 (521)
Q Consensus       255 ~~~l~~~~~d--~~~~vr~~~~~~l~~i~~~~~--------------~-~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~  317 (521)
                      -..+.+...+  .+|+-+..++..+..++..-+              - +.+...++|.+.+--..+.|-++..++.-+.
T Consensus       406 ~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvdv~~Ff~~~ilp~L~s~~vn~~pilka~aIKy~~  485 (960)
T KOG1992|consen  406 QRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVDVVDFFANQILPDLLSPNVNEFPILKADAIKYIY  485 (960)
T ss_pred             HHHHHHhccCCCccccccchhhhhhHHHHhhcchhhcceeeccccccHHHHHHHHhhHHhccCccccccchhhcccceee
Confidence            3334444445  468777777776666653211              1 2223445555544333556788888888888


Q ss_pred             HhhhhhchhhHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhC--------hhhhHHHHHHHHHHHc---CCCcHHH
Q 009975          318 QVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG--------VGFFDDKLGALCMQWL---QDKVYSI  386 (521)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~--------~~~~~~~l~~~l~~~l---~d~~~~v  386 (521)
                      .+-..+|++.+ -.++|.+...++.+...|...++.++..+....+        ++...+++.+.+.++.   +-+...-
T Consensus       486 ~FR~ql~~~~l-m~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p~~~E  564 (960)
T KOG1992|consen  486 TFRNQLGKEHL-MALLPRLIRFLEAESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLPGKAE  564 (960)
T ss_pred             eecccCChHHH-HHHHHHHHHhccCcchHHHHHHHHHHHhccccccCccccccchhhcchHHHHHHHHHHHhccCCcccc
Confidence            88888888776 6788999999999999999999888887754433        3333344444444443   2221121


Q ss_pred             HHHHHHHHHHHHHHhCHHH--HHhhhHHHH----HhhhcCc-chHHHHHHHHHHHHhhcccCh------HHHhhcHHHHH
Q 009975          387 RDAAANNLKRLAEEFGPEW--AMQHITPQV----LEMINNP-HYLYRMTILRAISLLAPVMGS------EITCSRLLPVV  453 (521)
Q Consensus       387 r~~a~~~l~~l~~~~~~~~--~~~~l~~~l----~~~l~~~-~~~~r~~a~~~l~~l~~~~~~------~~~~~~il~~l  453 (521)
                      -+-.++++-++........  +...+++.|    ....+++ +++.-.-..+.++.+....+.      ..+...++|.+
T Consensus       565 neylmKaImRii~i~~~~i~p~~~~~l~~Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~t~~~~~~~vs~~e~aL~p~f  644 (960)
T KOG1992|consen  565 NEYLMKAIMRIISILQSAIIPHAPELLRQLTEIVEEVSKNPSNPQFNHYLFESIGLLIRKTCKANPSAVSSLEEALFPVF  644 (960)
T ss_pred             cHHHHHHHHHHHHhCHHhhhhhhhHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHH
Confidence            2223333333332221111  122333333    3344443 455555666666666653222      23567788888


Q ss_pred             HhhcCCCCchHHHHHHHHHHHHHhhhch
Q 009975          454 INASKDRVPNIKFNVAKVLQSLIPIVDQ  481 (521)
Q Consensus       454 ~~~l~d~~~~VR~~a~~~l~~~~~~~~~  481 (521)
                      ...+..+..+.--.+...++.+.+..++
T Consensus       645 q~Il~eDI~EfiPYvfQlla~lve~~~~  672 (960)
T KOG1992|consen  645 QTILSEDIQEFIPYVFQLLAVLVEHSSG  672 (960)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            8878777777777888888888876544

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.57  E-value=0.00036  Score=69.17  Aligned_cols=398  Identities=14%  Similarity=0.132  Sum_probs=231.3

Q ss_pred             HHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCch----hhHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHhhhcChh
Q 009975           96 TELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPA----HLKTDIMSIFEDLTQDD-QDSVRLLAVEGCAALGKLLEPQ  170 (521)
Q Consensus        96 ~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~----~~~~~l~~~l~~l~~d~-~~~vr~~a~~~l~~l~~~~~~~  170 (521)
                      ..+.+++..+....++..+..++..|..+.....++    .-.+.+.|.+..+++++ +..+...|++++.++++.++..
T Consensus       167 Sk~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S  246 (1051)
T KOG0168|consen  167 SKAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRS  246 (1051)
T ss_pred             HHHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccch
Confidence            466677777777768888888877777766544333    24577899999998866 7899999999999999999874


Q ss_pred             h---hhhhhHHHHHHhcC-CCChHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhC
Q 009975          171 D---CVAHILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN  246 (521)
Q Consensus       171 ~---~~~~l~~~l~~~~~-d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~  246 (521)
                      .   ...+.+|.+.+-+. =.--+|-+.+.+++..|.+.-+.+.....-+..+..++.==...++..|+....+.+..+.
T Consensus       247 ~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~  326 (1051)
T KOG0168|consen  247 SAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIR  326 (1051)
T ss_pred             hheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            2   23457787776443 3455688999999999988766555544444444444443345678888888889999887


Q ss_pred             HHH--HHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccCh--HH----HHHhHHHHHHHhhcCCC----hHHHHHHHH
Q 009975          247 PEL--AIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK--DA----TIEQLLPIFLSLLKDEF----PDVRLNIIS  314 (521)
Q Consensus       247 ~~~--~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~--~~----~~~~l~~~l~~~l~d~~----~~vr~~a~~  314 (521)
                      ++.  +.-..+|.+..+++..+.++-+.++-++..++..+..  +.    ....++....+++.-..    ..+....+.
T Consensus       327 sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIr  406 (1051)
T KOG0168|consen  327 SDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIR  406 (1051)
T ss_pred             CccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHH
Confidence            764  3456789999999888888888888888888876632  11    22345555555554321    122333333


Q ss_pred             HHHHhhhhh--chh-hHhhhHHHHHHHHh----cCCChHH-----H--HHHHHHhHHHHhhhC---hhh-h---HHHH--
Q 009975          315 KLDQVNQVI--GID-LLSQSLLPAIVELA----EDRHWRV-----R--LAIIEYIPLLASQLG---VGF-F---DDKL--  371 (521)
Q Consensus       315 ~l~~~~~~~--~~~-~~~~~~~~~l~~~~----~~~~~~v-----r--~~~~~~l~~l~~~~~---~~~-~---~~~l--  371 (521)
                      -+..++...  +.. .+...|...+..++    ...+..+     |  ....+....+...+.   .+. |   ...+  
T Consensus       407 mls~msS~~pl~~~tl~k~~I~~~L~~il~g~s~s~nas~~~~l~r~Pnel~e~~sl~~eLlp~~p~e~i~~~~~~~~~~  486 (1051)
T KOG0168|consen  407 MLSLMSSGSPLLFRTLLKLDIADTLKRILQGYSKSANASLHELLSRSPNELYELTSLIIELLPCLPVEGIFAVDCSLIYE  486 (1051)
T ss_pred             HHHHHccCChHHHHHHHHhhHHHHHHHHHhccCcCcccccccccccCcHHHHHHHHHHheeecCCcccceeehhhhhhcc
Confidence            333333211  111 11122333333322    1111110     1  111222222222211   110 0   0000  


Q ss_pred             --------------------------HHHHHHHcCCC----------cHHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHH
Q 009975          372 --------------------------GALCMQWLQDK----------VYSIRDAAANNLKRLAEEFGPEWAMQHITPQVL  415 (521)
Q Consensus       372 --------------------------~~~l~~~l~d~----------~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~  415 (521)
                                                ..++-+.-.|+          +..-|+..+..=..+...     +...++|.|.
T Consensus       487 ~~n~~~~~~~~~~d~~~s~~~~~~~~~ri~~q~~~~~~t~~~~~dkl~~~~r~~~l~nqpel~q~-----F~~~llpVLv  561 (1051)
T KOG0168|consen  487 IVNLADELLWQWRDDRGSWHTYTNIDSRIIEQINEDTGTSRKQQDKLNGSAREGLLKNQPELLQS-----FGKDLLPVLV  561 (1051)
T ss_pred             cccccccccccCccccccccccchhhhhhhhhhccCcccchhhhhhcCCchhhhhhhcCHHHHHH-----HHHHHHHHHH
Confidence                                      00000000010          001122222211122222     3456889999


Q ss_pred             hhhcC-cchHHHHHHHHHHHHhhcccChHHHh-----hcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchH----HHH
Q 009975          416 EMINN-PHYLYRMTILRAISLLAPVMGSEITC-----SRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS----MVE  485 (521)
Q Consensus       416 ~~l~~-~~~~~r~~a~~~l~~l~~~~~~~~~~-----~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~----~~~  485 (521)
                      +.+.+ .++.+|.-++.+|.++.-....+.+.     ..+-.++-..+...+..|-..|+.....+++.+..-    +..
T Consensus       562 eVYsSsA~~~VR~kcL~Ailrlvy~s~seli~slLk~~~vSS~lAG~lsskD~~vlVgALQvAEiLmeKlpd~F~~~F~R  641 (1051)
T KOG0168|consen  562 EVYSSSANPDVRYKCLSAILRLVYFSNSELIGSLLKNTNVSSHLAGMLSSKDLTVLVGALQVAEILMEKLPDTFSPSFRR  641 (1051)
T ss_pred             HHHhccCCchhhHHHHHHHHHHHhhCCHHHHHHHHhcchHHHHHHhhhhcCCCeeEeehHHHHHHHHHHhHHHhhhhHhh
Confidence            97665 58999999999999988655544332     223345555677777777778888888888776543    334


Q ss_pred             hhHHHHHHHhcCC
Q 009975          486 KTIRPCLVELTED  498 (521)
Q Consensus       486 ~~~~~~l~~l~~D  498 (521)
                      +-++..+..|..|
T Consensus       642 EGV~~~v~~L~~~  654 (1051)
T KOG0168|consen  642 EGVFHAVKQLSVD  654 (1051)
T ss_pred             hhHHHHHHHHhcc
Confidence            5667777776553

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=98.56  E-value=9.3e-07  Score=64.86  Aligned_cols=84  Identities=29%  Similarity=0.425  Sum_probs=55.6

Q ss_pred             HHHHHhc-cCCcHHHHHHHHHHHHccccccChHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchhhHhhhHHH
Q 009975          256 PCVKELS-SDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLP  334 (521)
Q Consensus       256 ~~l~~~~-~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~  334 (521)
                      |.+.+.+ +|+++.+|..++.+++.+.        ....+|.+..+++|+++.||..|+.+++.+..        +..++
T Consensus         2 ~~L~~~l~~~~~~~vr~~a~~~L~~~~--------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~--------~~~~~   65 (88)
T PF13646_consen    2 PALLQLLQNDPDPQVRAEAARALGELG--------DPEAIPALIELLKDEDPMVRRAAARALGRIGD--------PEAIP   65 (88)
T ss_dssp             HHHHHHHHTSSSHHHHHHHHHHHHCCT--------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH--------HHTHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHcC--------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--------HHHHH
Confidence            4445544 6777777777777777553        34567777777777777788777777777642        45666


Q ss_pred             HHHHHhcC-CChHHHHHHHHHh
Q 009975          335 AIVELAED-RHWRVRLAIIEYI  355 (521)
Q Consensus       335 ~l~~~~~~-~~~~vr~~~~~~l  355 (521)
                      .+.+.+.+ +++.+|..++.+|
T Consensus        66 ~L~~~l~~~~~~~vr~~a~~aL   87 (88)
T PF13646_consen   66 ALIKLLQDDDDEVVREAAAEAL   87 (88)
T ss_dssp             HHHHHHTC-SSHHHHHHHHHHH
T ss_pred             HHHHHHcCCCcHHHHHHHHhhc
Confidence            66665544 4455677766655

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=98.54  E-value=5.9e-07  Score=65.92  Aligned_cols=85  Identities=28%  Similarity=0.398  Sum_probs=51.2

Q ss_pred             HHHHHhc-CCChHHHHHHHHHhHHHHHhhhCHHHHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccChHHHHHhHHH
Q 009975          217 PAYVRLL-RDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLP  295 (521)
Q Consensus       217 ~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~  295 (521)
                      |.+.+.+ +|+++.+|..++.+|+.+.    .    +..+|.+.++++|+++.||..++.+++.+.        .+..++
T Consensus         2 ~~L~~~l~~~~~~~vr~~a~~~L~~~~----~----~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~--------~~~~~~   65 (88)
T PF13646_consen    2 PALLQLLQNDPDPQVRAEAARALGELG----D----PEAIPALIELLKDEDPMVRRAAARALGRIG--------DPEAIP   65 (88)
T ss_dssp             HHHHHHHHTSSSHHHHHHHHHHHHCCT----H----HHHHHHHHHHHTSSSHHHHHHHHHHHHCCH--------HHHTHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHcC----C----HhHHHHHHHHHcCCCHHHHHHHHHHHHHhC--------CHHHHH
Confidence            4555555 6667777777776666332    1    234566666667777777777777777663        244566


Q ss_pred             HHHHhhcCC-ChHHHHHHHHHHH
Q 009975          296 IFLSLLKDE-FPDVRLNIISKLD  317 (521)
Q Consensus       296 ~l~~~l~d~-~~~vr~~a~~~l~  317 (521)
                      .+..++.++ +..||..|+.+|+
T Consensus        66 ~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   66 ALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             HHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCcHHHHHHHHhhcC
Confidence            666666554 3445666666653

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.53  E-value=0.0003  Score=68.20  Aligned_cols=294  Identities=16%  Similarity=0.141  Sum_probs=175.2

Q ss_pred             HHHHHhhcCCChhHHHHHHHHHHHHhhhcChhhhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCccccchHHH
Q 009975          139 SIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPA  218 (521)
Q Consensus       139 ~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~  218 (521)
                      ..+.+=+.+.++..-..|..+++++++.--.+....++..++..  .+....||+.++-++-.+.+..++-..+.+-..-
T Consensus       114 n~iknDL~srn~~fv~LAL~~I~niG~re~~ea~~~DI~KlLvS--~~~~~~vkqkaALclL~L~r~spDl~~~~~W~~r  191 (938)
T KOG1077|consen  114 NSIKNDLSSRNPTFVCLALHCIANIGSREMAEAFADDIPKLLVS--GSSMDYVKQKAALCLLRLFRKSPDLVNPGEWAQR  191 (938)
T ss_pred             HHHHhhhhcCCcHHHHHHHHHHHhhccHhHHHHhhhhhHHHHhC--CcchHHHHHHHHHHHHHHHhcCccccChhhHHHH
Confidence            33333344567777888999999988764334444445444332  3445679999999988888875555555567778


Q ss_pred             HHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhhhHHHHHhc-------cC---------CcHHHHHHHHHHHHcccc
Q 009975          219 YVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELS-------SD---------SSQHVRSALASVIMGMAP  282 (521)
Q Consensus       219 l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~-------~d---------~~~~vr~~~~~~l~~i~~  282 (521)
                      +..++.|.+-.|-.++...+..++...+++ ++..+.+.+..+.       .|         ++++..--++..+... +
T Consensus       192 iv~LL~D~~~gv~ta~~sLi~~lvk~~p~~-yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~-p  269 (938)
T KOG1077|consen  192 IVHLLDDQHMGVVTAATSLIEALVKKNPES-YKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIY-P  269 (938)
T ss_pred             HHHHhCccccceeeehHHHHHHHHHcCCHH-HhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhC-C
Confidence            889999998888888888887777765543 2333333332221       11         3444444444444443 2


Q ss_pred             ccChHHHHHhHHHHHHHhh---cCC--ChHHHHHHH------HHHHHhhhhhch-hhHhhhHHHHHHHHhcCCChHHHHH
Q 009975          283 LLGKDATIEQLLPIFLSLL---KDE--FPDVRLNII------SKLDQVNQVIGI-DLLSQSLLPAIVELAEDRHWRVRLA  350 (521)
Q Consensus       283 ~~~~~~~~~~l~~~l~~~l---~d~--~~~vr~~a~------~~l~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~vr~~  350 (521)
                      .-.+......+...+..++   +++  ...|...-+      +++. ++.++.. ..+.......+.+++.++...+|.-
T Consensus       270 ~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~-l~~h~D~e~~ll~~~~~~Lg~fls~rE~NiRYL  348 (938)
T KOG1077|consen  270 TPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAIS-LAIHLDSEPELLSRAVNQLGQFLSHRETNIRYL  348 (938)
T ss_pred             CCCCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHH-HHHHcCCcHHHHHHHHHHHHHHhhcccccchhh
Confidence            2222222333333333333   211  112221111      1111 1222221 2223455666777788888899999


Q ss_pred             HHHHhHHHHhhhCh-hhhHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCcchHHHHH
Q 009975          351 IIEYIPLLASQLGV-GFFDDKLGALCMQWLQ-DKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMT  428 (521)
Q Consensus       351 ~~~~l~~l~~~~~~-~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~  428 (521)
                      +++.+..++..-.. +.+.. -...++..|+ +++..+|+.|...|-.++..-.    .+.++..+.+.+...++.+|+.
T Consensus       349 aLEsm~~L~ss~~s~davK~-h~d~Ii~sLkterDvSirrravDLLY~mcD~~N----ak~IV~elLqYL~tAd~siree  423 (938)
T KOG1077|consen  349 ALESMCKLASSEFSIDAVKK-HQDTIINSLKTERDVSIRRRAVDLLYAMCDVSN----AKQIVAELLQYLETADYSIREE  423 (938)
T ss_pred             hHHHHHHHHhccchHHHHHH-HHHHHHHHhccccchHHHHHHHHHHHHHhchhh----HHHHHHHHHHHHhhcchHHHHH
Confidence            99988888765222 22333 3666777777 8999999999999988886543    3456667777777788888887


Q ss_pred             HHHHHHHhhcccCh
Q 009975          429 ILRAISLLAPVMGS  442 (521)
Q Consensus       429 a~~~l~~l~~~~~~  442 (521)
                      .+--+.-+++.+..
T Consensus       424 ivlKvAILaEKyAt  437 (938)
T KOG1077|consen  424 IVLKVAILAEKYAT  437 (938)
T ss_pred             HHHHHHHHHHHhcC
Confidence            77666666665543

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.52  E-value=0.00016  Score=70.34  Aligned_cols=252  Identities=17%  Similarity=0.118  Sum_probs=141.7

Q ss_pred             CChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcChhhhhhhhHHHHHHhcCC-C
Q 009975          109 DMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQD-K  187 (521)
Q Consensus       109 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d-~  187 (521)
                      +++.||+.++-.||-..-..    ...++...+...+..++...-.+|.-.++-+.-.-    ...+.+.-+.....+ .
T Consensus       426 ~~e~v~hG~cLGlGLa~mGS----a~~eiYe~lKevLy~D~AvsGEAAgi~MGl~mlGt----~~~eaiedm~~Ya~ETQ  497 (929)
T KOG2062|consen  426 ENEVVRHGACLGLGLAGMGS----ANEEIYEKLKEVLYNDSAVSGEAAGIAMGLLMLGT----ANQEAIEDMLTYAQETQ  497 (929)
T ss_pred             cchhhhhhhhhhccchhccc----ccHHHHHHHHHHHhccchhhhhHHHHhhhhHhhCc----CcHHHHHHHHHHhhhhh
Confidence            46677777777666543211    12334444455444443333344444444333221    112233333343333 3


Q ss_pred             ChHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhhhHHHHHhccCCcH
Q 009975          188 SWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQ  267 (521)
Q Consensus       188 ~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~  267 (521)
                      ..++.+...-.+.-+.-  +.   ..+.=|.+.+++.|.++..|...+.++..--.-.|.......+++.   ..+|.|.
T Consensus       498 Heki~RGl~vGiaL~~y--gr---qe~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgnnkair~lLh~---aVsD~nD  569 (929)
T KOG2062|consen  498 HEKIIRGLAVGIALVVY--GR---QEDADPLIKELLRDKDPILRYGGMYTLALAYVGTGNNKAIRRLLHV---AVSDVND  569 (929)
T ss_pred             HHHHHHHHHHhHHHHHh--hh---hhhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCchhhHHHhhcc---cccccch
Confidence            44555555554443332  21   1245577888888888888888776654322222333322223222   3578888


Q ss_pred             HHHHHHHHHHHccccccChHHHHHhHHHHHHHhh-cCCChHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHhcCCChH
Q 009975          268 HVRSALASVIMGMAPLLGKDATIEQLLPIFLSLL-KDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWR  346 (521)
Q Consensus       268 ~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  346 (521)
                      .||++|+.++|-++-.-      ....|..+++| ++.|+.||.+++-+|+-.|...|.    ...+..+..+..|+.--
T Consensus       570 DVrRaAVialGFVl~~d------p~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~----~eAi~lLepl~~D~~~f  639 (929)
T KOG2062|consen  570 DVRRAAVIALGFVLFRD------PEQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGL----KEAINLLEPLTSDPVDF  639 (929)
T ss_pred             HHHHHHHHHheeeEecC------hhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCc----HHHHHHHhhhhcChHHH
Confidence            99999988888765211      12344444444 456889999999999888877664    34566666777888888


Q ss_pred             HHHHHHHHhHHHHhhhChhhh--HHHHHHHHHHHcCCCcHHH
Q 009975          347 VRLAIIEYIPLLASQLGVGFF--DDKLGALCMQWLQDKVYSI  386 (521)
Q Consensus       347 vr~~~~~~l~~l~~~~~~~~~--~~~l~~~l~~~l~d~~~~v  386 (521)
                      ||+.++-++..+.-+..+...  ...+...+.+.+.|.+.+.
T Consensus       640 VRQgAlIa~amIm~Q~t~~~~pkv~~frk~l~kvI~dKhEd~  681 (929)
T KOG2062|consen  640 VRQGALIALAMIMIQQTEQLCPKVNGFRKQLEKVINDKHEDG  681 (929)
T ss_pred             HHHHHHHHHHHHHHhcccccCchHHHHHHHHHHHhhhhhhHH
Confidence            898888888777666544311  2335555566666665543

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=98.49  E-value=2.1e-05  Score=66.07  Aligned_cols=109  Identities=21%  Similarity=0.178  Sum_probs=64.8

Q ss_pred             hhHHHHHHHHHHHHhhhcChhhhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHH
Q 009975          150 DSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAE  229 (521)
Q Consensus       150 ~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~  229 (521)
                      +.+|..++.+++-++...+.  ......|.+...+.|+++.||+.++..+..+... +--.....++..+..++.|++++
T Consensus         2 ~~vR~n~i~~l~DL~~r~~~--~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~-d~ik~k~~l~~~~l~~l~D~~~~   78 (178)
T PF12717_consen    2 PSVRNNAIIALGDLCIRYPN--LVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILE-DMIKVKGQLFSRILKLLVDENPE   78 (178)
T ss_pred             HHHHHHHHHHHHHHHHhCcH--HHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc-CceeehhhhhHHHHHHHcCCCHH
Confidence            45666666666666666543  3344556666667777777777777776666532 11111234446666667777777


Q ss_pred             HHHHHHHhHHHHHhhhCHHHHHHhhhHHHHHh
Q 009975          230 VRIAAAGKVTKFCRILNPELAIQHILPCVKEL  261 (521)
Q Consensus       230 vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~  261 (521)
                      ||..|...+..+.....++.+.+.+.+.+..+
T Consensus        79 Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l  110 (178)
T PF12717_consen   79 IRSLARSFFSELLKKRNPNIIYNNFPELISSL  110 (178)
T ss_pred             HHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence            77777777777777655555544444444433

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=98.48  E-value=0.0022  Score=66.25  Aligned_cols=159  Identities=16%  Similarity=0.187  Sum_probs=118.5

Q ss_pred             HHHhHHHHhh---hChhhhHHHHHHHHHHHcCC----CcHHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhc-Ccch
Q 009975          352 IEYIPLLASQ---LGVGFFDDKLGALCMQWLQD----KVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMIN-NPHY  423 (521)
Q Consensus       352 ~~~l~~l~~~---~~~~~~~~~l~~~l~~~l~d----~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-~~~~  423 (521)
                      .+.+..+++.   .|++.....+.|++....+.    .++.++.+|.-+++++... ..+ +.+.-+|.+...++ +|++
T Consensus       898 ~d~i~~icE~eLl~gek~lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~i-Sa~-fces~l~llftimeksp~p  975 (1251)
T KOG0414|consen  898 ADLISGICEKELLYGEKSLLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCI-SAE-FCESHLPLLFTIMEKSPSP  975 (1251)
T ss_pred             HHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhh-hHH-HHHHHHHHHHHHHhcCCCc
Confidence            3444444432   46566667788999888743    5699999999999998743 233 34567788888765 8999


Q ss_pred             HHHHHHHHHHHHhhcccChHHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchHHHHhhHHHHHHHhcCCCCccH
Q 009975          424 LYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDV  503 (521)
Q Consensus       424 ~~r~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~~~~~~~~l~~l~~D~~~~v  503 (521)
                      ++|..++-++|.++-.++.  +.+..-+.++..+.|+++.||..|.-+++.+... +--.+ .-.++.+..++.|+++.|
T Consensus       976 ~IRsN~VvalgDlav~fpn--lie~~T~~Ly~rL~D~~~~vRkta~lvlshLILn-dmiKV-KGql~eMA~cl~D~~~~I 1051 (1251)
T KOG0414|consen  976 RIRSNLVVALGDLAVRFPN--LIEPWTEHLYRRLRDESPSVRKTALLVLSHLILN-DMIKV-KGQLSEMALCLEDPNAEI 1051 (1251)
T ss_pred             eeeecchheccchhhhccc--ccchhhHHHHHHhcCccHHHHHHHHHHHHHHHHh-hhhHh-cccHHHHHHHhcCCcHHH
Confidence            9999999999988865443  3466778999999999999999999999887753 11112 334566777899999999


Q ss_pred             HHHHHHHHHHHHH
Q 009975          504 RFFATQAIQSIDH  516 (521)
Q Consensus       504 r~~a~~al~~l~~  516 (521)
                      |..|..-+..|.+
T Consensus      1052 sdlAk~FF~Els~ 1064 (1251)
T KOG0414|consen 1052 SDLAKSFFKELSS 1064 (1251)
T ss_pred             HHHHHHHHHHhhh
Confidence            9999977776654

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=98.47  E-value=0.0016  Score=62.96  Aligned_cols=399  Identities=16%  Similarity=0.080  Sum_probs=215.3

Q ss_pred             hhhhhhhhhhcCCCChH----HHHHHHHHHHHhcCCCC-hHHHHHHHHhHHHHHHhhCc-----hhhHHHHHHHHHHhhc
Q 009975           77 VSACGLFHIAYPSAPDI----LKTELRSIYTQLCQDDM-PMVRRSAASNLGKFAATVEP-----AHLKTDIMSIFEDLTQ  146 (521)
Q Consensus        77 ~~~~~~~~~~~~~~~~~----~~~~l~~~l~~l~~~~~-~~vr~~a~~~l~~l~~~~~~-----~~~~~~l~~~l~~l~~  146 (521)
                      .....+++..+.+..+.    .....++.+.+++++++ ..++.+..+++.++.+..+.     ......+++.+..+..
T Consensus        71 ~~~~~llns~f~~eqd~v~svL~~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s  150 (678)
T KOG1293|consen   71 NGFAVLLNSLFLGEQDKVDSVLRIIELLKLLQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYS  150 (678)
T ss_pred             hhHHHHHHhHHhhccchHHHHHHHhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHh
Confidence            34445555555433222    34556677778888887 88999999999999876542     1233445555555444


Q ss_pred             -CCChhHHHHHHHHHHHHhhhcChh-h-hhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCC----------cccc
Q 009975          147 -DDQDSVRLLAVEGCAALGKLLEPQ-D-CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE----------PTRM  213 (521)
Q Consensus       147 -d~~~~vr~~a~~~l~~l~~~~~~~-~-~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~----------~~~~  213 (521)
                       ......+..+ ............+ . +...+..-+.-+....+...|.++..++.+-...+-.+          ....
T Consensus       151 ~~lk~~~~l~~-~~~a~~s~~~~hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~  229 (678)
T KOG1293|consen  151 IELKYISRLDV-SRAAHLSSTKDHQLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDK  229 (678)
T ss_pred             hhhhhhhhhhh-hhhccccccchhhheeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhcc
Confidence             2222222111 1111111111000 0 11123333333344446778888888887322211111          1123


Q ss_pred             chHH--HHHHhcCCChHHHHHHHHHhHHHHHhhhCHH-------HHH----Hhh-hHHHHHhccCCcHHHHHHHHHHHHc
Q 009975          214 DLVP--AYVRLLRDNEAEVRIAAAGKVTKFCRILNPE-------LAI----QHI-LPCVKELSSDSSQHVRSALASVIMG  279 (521)
Q Consensus       214 ~l~~--~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~-------~~~----~~~-~~~l~~~~~d~~~~vr~~~~~~l~~  279 (521)
                      .+.+  ...++++|++.+.|..++.++..+...--..       .+.    +.+ .-....+..|+-|..-...+..+..
T Consensus       230 ~v~~r~~v~rL~k~~~~s~~l~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~  309 (678)
T KOG1293|consen  230 GVNIRCVVTRLLKDPDFSERLRSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCI  309 (678)
T ss_pred             ccchhhhhhhhhhCCCccHHHHHHHHHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHH
Confidence            3444  4556788888888877777777665532000       000    001 1112233445554322222222222


Q ss_pred             ---cccccChHHHHHh---HHHHHHHh---hcCCChHHHHHHHHHHHHh---hhhhchhhHhhhHH-----HHHHHHhcC
Q 009975          280 ---MAPLLGKDATIEQ---LLPIFLSL---LKDEFPDVRLNIISKLDQV---NQVIGIDLLSQSLL-----PAIVELAED  342 (521)
Q Consensus       280 ---i~~~~~~~~~~~~---l~~~l~~~---l~d~~~~vr~~a~~~l~~~---~~~~~~~~~~~~~~-----~~l~~~~~~  342 (521)
                         +............   ..+.++..   ++...++.|.-++....-.   +...+.. ..+.+.     ..+......
T Consensus       310 ~a~~~sklq~~~~e~~~~~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~-~~k~~l~~~t~~~l~~~~~~  388 (678)
T KOG1293|consen  310 LARFASKLQLPQHEEATLKTTTELLFICASLAASDEKYRLILLNETLILNHLEYGLEIS-LKKEILETTTESHLMCLPPI  388 (678)
T ss_pred             HHHHHHhhhhHHhhhhhhhhHHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchh-HHHHHHHHHHHHHHcccccc
Confidence               2222211111122   22222221   2344455555444332211   1111111 112222     222222344


Q ss_pred             CChHHHHHHHHHhHHHHhhhC---hhhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCH---HHHHhhhHHHHHh
Q 009975          343 RHWRVRLAIIEYIPLLASQLG---VGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP---EWAMQHITPQVLE  416 (521)
Q Consensus       343 ~~~~vr~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~  416 (521)
                      .+..++.+++.++..+...+.   ...-..++...+.+++.|++..|...+..++-.++-.+++   .++....+..+.+
T Consensus       389 kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s  468 (678)
T KOG1293|consen  389 KDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILES  468 (678)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHH
Confidence            567788888888777665432   2222345555666777999999999999999999877764   3456778899999


Q ss_pred             hhcCcchHHHHHHHHHHHHhhcccChHH---H-hhcHHHHHHhhcCCCCchHHHHHHHHHHHHHh
Q 009975          417 MINNPHYLYRMTILRAISLLAPVMGSEI---T-CSRLLPVVINASKDRVPNIKFNVAKVLQSLIP  477 (521)
Q Consensus       417 ~l~~~~~~~r~~a~~~l~~l~~~~~~~~---~-~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~  477 (521)
                      ++.+++..+|..+++++.++.=......   + ..-....+..+.+|+.+.|...+++.+..+..
T Consensus       469 ~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c  533 (678)
T KOG1293|consen  469 MLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTC  533 (678)
T ss_pred             HhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhc
Confidence            9999999999999999999874333221   1 23345677788999999999999999988754

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=98.47  E-value=2.5e-05  Score=71.95  Aligned_cols=409  Identities=14%  Similarity=0.087  Sum_probs=233.5

Q ss_pred             hcCchhHHHHHHHHHHHHHHhhcChhHHH----HhHHHHHHHhhcCCCCcchhhhhhhhhhhcCCCChHHHHHHHHHHHH
Q 009975           29 CTVEETCVRDKAVESLCRIGSQMRESDLV----DWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQ  104 (521)
Q Consensus        29 ~~~~~~~vR~~a~~~l~~i~~~~~~~~~~----~~l~p~i~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~~l~~  104 (521)
                      .....+.+--+.++++..+....+.++++    ..++..+..++.+.+..+|.+++.+++.+......  ..++-..+..
T Consensus       116 ~~e~~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~i~~~d~~v~vs~l~~~~~~v~t~~~--~pei~~~~~~  193 (728)
T KOG4535|consen  116 VAESSSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPYIRHKDVNVRVSSLTLLGAIVSTHAP--LPEVQLLLQQ  193 (728)
T ss_pred             HHhcCchhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHhcCCC--CHHHHHHhcC
Confidence            34556677778889999999988877654    34445556666777788999998888877643211  1222222222


Q ss_pred             hcCCCCh--------H--HHHHHHHhHHHHHHhhCch------------------hhHHHHHHHHHHhhcC--CChhHHH
Q 009975          105 LCQDDMP--------M--VRRSAASNLGKFAATVEPA------------------HLKTDIMSIFEDLTQD--DQDSVRL  154 (521)
Q Consensus       105 l~~~~~~--------~--vr~~a~~~l~~l~~~~~~~------------------~~~~~l~~~l~~l~~d--~~~~vr~  154 (521)
                      -.+..+.        +  ..--+..++.++...-++.                  ........-.......  ....+|.
T Consensus       194 ~~s~~n~~~~h~s~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~i~~~~~i~~~~~~~s~~~~~~~~~~~~~~~ps~~rl  273 (728)
T KOG4535|consen  194 PCSSSNSATPHLSPPDWWKKLPAGPSLEETSVSSPKGSSEPCWLIRLCISIVVLPKEDSCSGSDAGSAAGSTYEPSPMRL  273 (728)
T ss_pred             CCccccccCCCCCChHHHHhcCCCchhhhhccCCccCCCCCcceeeeeeeeeecCCccccchhhHHhhhcCccCCchhHH
Confidence            2211110        0  0101111111111110000                  0000111111122222  2347899


Q ss_pred             HHHHHHHHHhhhcCh-hhhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCc----cccchHH--HHHHhc----
Q 009975          155 LAVEGCAALGKLLEP-QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP----TRMDLVP--AYVRLL----  223 (521)
Q Consensus       155 ~a~~~l~~l~~~~~~-~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~----~~~~l~~--~l~~~l----  223 (521)
                      .+.+.+..++.+++- ....-++...+.....+..+.++..++.++.++....+.+.    .+..+..  +..-++    
T Consensus       274 e~~qvl~~~a~~~~~~~~~~~~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~~l~~p~  353 (728)
T KOG4535|consen  274 EALQVLTLLARYFSMTQAYLMELGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTMMLNGPL  353 (728)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHHHccCCC
Confidence            999999999998754 22344566667777889999999999999988877655222    1111111  111111    


Q ss_pred             ----CCC-hHHHHHHHHHhHHHHHhhh----CHHHHHHhhhHHHHHhccCC-cHHHHHHHHHHHHccccccChH---HHH
Q 009975          224 ----RDN-EAEVRIAAAGKVTKFCRIL----NPELAIQHILPCVKELSSDS-SQHVRSALASVIMGMAPLLGKD---ATI  290 (521)
Q Consensus       224 ----~d~-~~~vr~~a~~~l~~l~~~~----~~~~~~~~~~~~l~~~~~d~-~~~vr~~~~~~l~~i~~~~~~~---~~~  290 (521)
                          .|. .+..+.+++.++..++...    +..  .....+.+..-+.|. +.-+|.++..+++...-+-+-.   .+.
T Consensus       354 ~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~--~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv  431 (728)
T KOG4535|consen  354 PRALYDSEHPTLQASACDALSSILPEAFSNLPND--RQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQDVIFV  431 (728)
T ss_pred             hhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCc--chhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhhHHHH
Confidence                121 2345666666666655432    111  123455566556654 4557888887777665443322   234


Q ss_pred             HhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhc-----hhh----HhhhHHHHHHHH---hcCCChHHHHHHHHHhHHH
Q 009975          291 EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG-----IDL----LSQSLLPAIVEL---AEDRHWRVRLAIIEYIPLL  358 (521)
Q Consensus       291 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~-----~~~----~~~~~~~~l~~~---~~~~~~~vr~~~~~~l~~l  358 (521)
                      ......+...+.|....+|.++..+++.+...+-     ++.    +....+..+.+.   ..-.+.+||..+.+.++.+
T Consensus       432 ~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnl  511 (728)
T KOG4535|consen  432 ADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNL  511 (728)
T ss_pred             HHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhH
Confidence            4566677778888889999999999998865542     111    112222222222   1234678999999999888


Q ss_pred             HhhhCh---hhh----HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCH----HHHHhhhHHHHHhhhcC-cchHHH
Q 009975          359 ASQLGV---GFF----DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP----EWAMQHITPQVLEMINN-PHYLYR  426 (521)
Q Consensus       359 ~~~~~~---~~~----~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~~l~~-~~~~~r  426 (521)
                      .+.+.+   -.+    ...+...+....-..+..||..++.+++++.+.-..    ......+++.|..++.+ +|..+|
T Consensus       512 lQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVR  591 (728)
T KOG4535|consen  512 LQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNFKVR  591 (728)
T ss_pred             HHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhccceEe
Confidence            776542   111    111222222233356778999999999999864322    22346688888887654 789999


Q ss_pred             HHHHHHHHHhhcccC
Q 009975          427 MTILRAISLLAPVMG  441 (521)
Q Consensus       427 ~~a~~~l~~l~~~~~  441 (521)
                      ..|+.++.......+
T Consensus       592 i~AA~aL~vp~~re~  606 (728)
T KOG4535|consen  592 IRAAAALSVPGKREQ  606 (728)
T ss_pred             ehhhhhhcCCCCccc
Confidence            999988877766444

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=98.47  E-value=1.1e-06  Score=69.04  Aligned_cols=108  Identities=17%  Similarity=0.151  Sum_probs=72.2

Q ss_pred             hhhHHHHHhhhcCcchHHHHHHHHHHHHhhccc---ChHHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchH--
Q 009975          408 QHITPQVLEMINNPHYLYRMTILRAISLLAPVM---GSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--  482 (521)
Q Consensus       408 ~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~---~~~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~--  482 (521)
                      ..+++.+.+++.++++.+|..++.+++.++...   ........++|.+.+++.|+++.||..++.+|+.++...+..  
T Consensus         6 ~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~   85 (120)
T cd00020           6 AGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKL   85 (120)
T ss_pred             cCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHH
Confidence            346667777777777777777777777777531   112223467777777777777778888888887777653221  


Q ss_pred             -HHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHH
Q 009975          483 -MVEKTIRPCLVELTEDPDVDVRFFATQAIQSID  515 (521)
Q Consensus       483 -~~~~~~~~~l~~l~~D~~~~vr~~a~~al~~l~  515 (521)
                       .....+++.+.+++++.+.++|..+.+++..+.
T Consensus        86 ~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~  119 (120)
T cd00020          86 IVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA  119 (120)
T ss_pred             HHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence             122446777777777777788888887777765

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=98.47  E-value=0.0017  Score=62.83  Aligned_cols=415  Identities=14%  Similarity=0.063  Sum_probs=215.0

Q ss_pred             HHHHHHhcCC--CChHHHHHHHHhHHHHHHhhCc---hhhHHHHHHHHHHhhcCCC-hhHHHHHHHHHHHHhhhcChh--
Q 009975           99 RSIYTQLCQD--DMPMVRRSAASNLGKFAATVEP---AHLKTDIMSIFEDLTQDDQ-DSVRLLAVEGCAALGKLLEPQ--  170 (521)
Q Consensus        99 ~~~l~~l~~~--~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~l~~d~~-~~vr~~a~~~l~~l~~~~~~~--  170 (521)
                      .+.+..+.+.  ..++........++.++.....   +......++.+.+++.+.+ ..++....+++..+.+..+..  
T Consensus        53 v~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~svL~~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~  132 (678)
T KOG1293|consen   53 VELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSVLRIIELLKLLQLLSESDSLNVLEKTLRCLRTIFETSKYQDK  132 (678)
T ss_pred             hHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHHHHHhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhccccccc
Confidence            3445555444  3455555566666665543222   2344556777888888888 799999999999998875332  


Q ss_pred             ---hhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhC-CC-c-cccchHHHHHHhcCCChHHHHHHHHHhHHHHHhh
Q 009975          171 ---DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG-PE-P-TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRI  244 (521)
Q Consensus       171 ---~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~-~~-~-~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~  244 (521)
                         .....+++.+..+...+...+-..-+..+. .+.... +. . ....+...+.-++.-.+..+|.+|..++......
T Consensus       133 ~~s~~~~sIi~~~s~l~s~~lk~~~~l~~~~~a-~~s~~~~hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~i  211 (678)
T KOG1293|consen  133 KMSLHLKSIIVKFSLLYSIELKYISRLDVSRAA-HLSSTKDHQLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRI  211 (678)
T ss_pred             chhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhc-cccccchhhheeccccchhhHHHHHHhhhHHHHHHHHHHhhcccee
Confidence               223345555555444222111111111111 111111 00 0 0122333333333333567889998888832222


Q ss_pred             h--CHH---HH-----HHhhhH--HHHHhccCCcHHHHHHHHHHHHcccccc-ChHHH----------HHhHHH-HHHHh
Q 009975          245 L--NPE---LA-----IQHILP--CVKELSSDSSQHVRSALASVIMGMAPLL-GKDAT----------IEQLLP-IFLSL  300 (521)
Q Consensus       245 ~--~~~---~~-----~~~~~~--~l~~~~~d~~~~vr~~~~~~l~~i~~~~-~~~~~----------~~~l~~-~l~~~  300 (521)
                      +  ++.   .+     ...+.+  .+..+..|++...|...+.++..+...- .++..          .+.+.. ....+
T Consensus       212 L~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l  291 (678)
T KOG1293|consen  212 LRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLRSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVL  291 (678)
T ss_pred             eecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHHHHHHHHHHHhccccccccccceeeccCchHHHHHHhhhee
Confidence            2  111   11     111223  3455667777777766666666554321 11100          011111 11223


Q ss_pred             hcCCChHHHHHHHHHH---HHhhhhhchhhHhhhHHHHHHHH------hcCCChHHHHHHHHHhHHH---HhhhCh---h
Q 009975          301 LKDEFPDVRLNIISKL---DQVNQVIGIDLLSQSLLPAIVEL------AEDRHWRVRLAIIEYIPLL---ASQLGV---G  365 (521)
Q Consensus       301 l~d~~~~vr~~a~~~l---~~~~~~~~~~~~~~~~~~~l~~~------~~~~~~~vr~~~~~~l~~l---~~~~~~---~  365 (521)
                      ..|+....-..++.-+   ..+.+.+..........+.+.++      +....++.|.-++......   +...+.   +
T Consensus       292 ~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k  371 (678)
T KOG1293|consen  292 MNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKK  371 (678)
T ss_pred             ecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHH
Confidence            3333211111111111   11222222222222223322222      1334444444433322111   111111   1


Q ss_pred             hhHHH-HHHHHHHHcCCCcHHHHHHHHHHHHHHHHHh---CHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccC
Q 009975          366 FFDDK-LGALCMQWLQDKVYSIRDAAANNLKRLAEEF---GPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMG  441 (521)
Q Consensus       366 ~~~~~-l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~---~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~  441 (521)
                      .+... ....+.....-.+..++.+|+.++..+....   ....-...+...+.+++.+|.-.+..+++.++..+...++
T Consensus       372 ~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs  451 (678)
T KOG1293|consen  372 EILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFS  451 (678)
T ss_pred             HHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcc
Confidence            11111 2222223333467788889988887765432   2222235566777778899999999999999999998777


Q ss_pred             h---HHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchH----HHHhhHHHHHHHhcCCCCccHHHHHHHHHHHH
Q 009975          442 S---EITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS----MVEKTIRPCLVELTEDPDVDVRFFATQAIQSI  514 (521)
Q Consensus       442 ~---~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~----~~~~~~~~~l~~l~~D~~~~vr~~a~~al~~l  514 (521)
                      +   .+.....+..+.+.+.++.+++|..+.++|..+.-.....    .....-...+..+.+|+|+.|...+...+..+
T Consensus       452 ~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl  531 (678)
T KOG1293|consen  452 NLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNL  531 (678)
T ss_pred             cHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence            5   3455778899999999999999999999998876432221    12223344556688999999988887776654

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=98.46  E-value=1.2e-05  Score=67.52  Aligned_cols=113  Identities=19%  Similarity=0.192  Sum_probs=90.6

Q ss_pred             hhHHHHHHHHHHHHHHhhcChhHHHHhHHHHHHHhhcCCCCcchhhhhhhhhhhcCCCChHHHHHHHHHHHHhcCCCChH
Q 009975           33 ETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPM  112 (521)
Q Consensus        33 ~~~vR~~a~~~l~~i~~~~~~~~~~~~l~p~i~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~  112 (521)
                      ++.+|..++.++++++...+  .+.+..+|.+.....|++..+|..++..+..+....--..+..++..+..++.|+++.
T Consensus         1 ~~~vR~n~i~~l~DL~~r~~--~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D~~~~   78 (178)
T PF12717_consen    1 DPSVRNNAIIALGDLCIRYP--NLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVDENPE   78 (178)
T ss_pred             CHHHHHHHHHHHHHHHHhCc--HHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcCCCHH
Confidence            57899999999999999886  4456778888888889999999999888877765433334667767777888999999


Q ss_pred             HHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcC
Q 009975          113 VRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQD  147 (521)
Q Consensus       113 vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d  147 (521)
                      ||..|...+..+.....+..+.+.+.+.+..+.+.
T Consensus        79 Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~~  113 (178)
T PF12717_consen   79 IRSLARSFFSELLKKRNPNIIYNNFPELISSLNNC  113 (178)
T ss_pred             HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhCc
Confidence            99999999999998766666777777777776653

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=98.46  E-value=9.6e-06  Score=71.38  Aligned_cols=190  Identities=18%  Similarity=0.143  Sum_probs=124.7

Q ss_pred             HHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCchh--hHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcChhh-hh
Q 009975           97 ELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAH--LKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQD-CV  173 (521)
Q Consensus        97 ~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~-~~  173 (521)
                      .+-+++.-+-...+|.+++.+..+++..+..-....  ..-..++.+..++.++++.+|..|+.++.+++....... ..
T Consensus        13 ~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik   92 (254)
T PF04826_consen   13 ELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIK   92 (254)
T ss_pred             HHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHH
Confidence            444444444456789999999999999764322222  223568899999999999999999999999887654432 22


Q ss_pred             hhhHHHHHHhcCC-CChHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhC--HHHH
Q 009975          174 AHILPVIVNFSQD-KSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN--PELA  250 (521)
Q Consensus       174 ~~l~~~l~~~~~d-~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~--~~~~  250 (521)
                      .++-..+.....+ .+..++.++.+.|..+.-.-.........+|.+..++..++..+|..+++.|..+++.-.  ++-+
T Consensus        93 ~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np~~~~~Ll  172 (254)
T PF04826_consen   93 MYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSENPDMTRELL  172 (254)
T ss_pred             HHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhccCHHHHHHHH
Confidence            3333333333333 466788888888888753222111223467778888888888999999999998887542  2233


Q ss_pred             HHhhhHHHHHhccCC-cHHHHHHHHHHHHccccccCh
Q 009975          251 IQHILPCVKELSSDS-SQHVRSALASVIMGMAPLLGK  286 (521)
Q Consensus       251 ~~~~~~~l~~~~~d~-~~~vr~~~~~~l~~i~~~~~~  286 (521)
                      ..+..+.+..+++.+ +..+...++..+..+...+.+
T Consensus       173 ~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~  209 (254)
T PF04826_consen  173 SAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKK  209 (254)
T ss_pred             hccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCc
Confidence            345666677777654 445555666666666554443

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]

Probab=98.43  E-value=0.0001  Score=62.91  Aligned_cols=219  Identities=20%  Similarity=0.212  Sum_probs=124.2

Q ss_pred             HHHHhcCCCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCC--ChhHHHHHHHHHHHHhhhcChhhhhhhhHH
Q 009975          101 IYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDD--QDSVRLLAVEGCAALGKLLEPQDCVAHILP  178 (521)
Q Consensus       101 ~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~--~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~  178 (521)
                      .+.+...|++...++..+.+||+..        ...-+|.+...+.|+  .+-||..|.++|+.+..        +.+.+
T Consensus        40 ~i~ka~~d~s~llkhe~ay~LgQ~~--------~~~Av~~l~~vl~desq~pmvRhEAaealga~~~--------~~~~~  103 (289)
T KOG0567|consen   40 AITKAFIDDSALLKHELAYVLGQMQ--------DEDAVPVLVEVLLDESQEPMVRHEAAEALGAIGD--------PESLE  103 (289)
T ss_pred             HHHHhcccchhhhccchhhhhhhhc--------cchhhHHHHHHhcccccchHHHHHHHHHHHhhcc--------hhhHH
Confidence            3333333444444555555555443        123345555555544  45788888888888762        34667


Q ss_pred             HHHHhcCCCChHHHHHHHHHHHHHHHHhCCCc------------ccc---chHHHHHHhcCCCh-HH-HHHHHHHhHHHH
Q 009975          179 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEP------------TRM---DLVPAYVRLLRDNE-AE-VRIAAAGKVTKF  241 (521)
Q Consensus       179 ~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~------------~~~---~l~~~l~~~l~d~~-~~-vr~~a~~~l~~l  241 (521)
                      ++.+..+|+-..||..+..++.++-..-+.+.            .++   .-+.-+...+.|.+ +. -|..|+-.|..+
T Consensus       104 ~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~  183 (289)
T KOG0567|consen  104 ILTKYIKDPCKEVRETCELAIKRLEWKDIIDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNI  183 (289)
T ss_pred             HHHHHhcCCccccchHHHHHHHHHHHhhccccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhcc
Confidence            77777788888888887667766643211000            000   01122222222222 11 122333222221


Q ss_pred             HhhhCHHHHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccChHHHHHhHHHHHHHhhcC--CChHHHHHHHHHHHHh
Q 009975          242 CRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKD--EFPDVRLNIISKLDQV  319 (521)
Q Consensus       242 ~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d--~~~~vr~~a~~~l~~~  319 (521)
                          |.+    .-+..+.+-+.+++.-.|..++.++|++-        ...-+|.+.+.|.|  +++.||..|+.+|+.+
T Consensus       184 ----g~E----eaI~al~~~l~~~SalfrhEvAfVfGQl~--------s~~ai~~L~k~L~d~~E~pMVRhEaAeALGaI  247 (289)
T KOG0567|consen  184 ----GTE----EAINALIDGLADDSALFRHEVAFVFGQLQ--------SPAAIPSLIKVLLDETEHPMVRHEAAEALGAI  247 (289)
T ss_pred             ----CcH----HHHHHHHHhcccchHHHHHHHHHHHhhcc--------chhhhHHHHHHHHhhhcchHHHHHHHHHHHhh
Confidence                222    12344455556667778888888888775        23346666666554  4677888888888887


Q ss_pred             hhhhchhhHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHH
Q 009975          320 NQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLA  359 (521)
Q Consensus       320 ~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~  359 (521)
                      +.        +..++.+.++.+|+..-||..+.-++...-
T Consensus       248 a~--------e~~~~vL~e~~~D~~~vv~esc~valdm~e  279 (289)
T KOG0567|consen  248 AD--------EDCVEVLKEYLGDEERVVRESCEVALDMLE  279 (289)
T ss_pred             cC--------HHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence            76        566777788888888888877776666543

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=98.43  E-value=0.00018  Score=69.85  Aligned_cols=227  Identities=16%  Similarity=0.092  Sum_probs=138.0

Q ss_pred             HHHHHHHHHHHccccccChHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhc--hhhHhhhHHHHHHHHhcCCCh
Q 009975          268 HVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG--IDLLSQSLLPAIVELAEDRHW  345 (521)
Q Consensus       268 ~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~  345 (521)
                      +|-+.++..+..+-+.-..+.....++-.++......+..||..++.-+..+....+  .+.+.+.+...+..-+.|..+
T Consensus        61 RIl~fla~fv~sl~q~d~e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep  140 (892)
T KOG2025|consen   61 RILSFLARFVESLPQLDKEEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREP  140 (892)
T ss_pred             HHHHHHHHHHHhhhccCchhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCc
Confidence            444444444444433333344556666677777778888899888888888776333  344457777777777788888


Q ss_pred             HHHHHHHHHhHHHHhhhChhhhHHHHHHHHHHH-cCCCcHHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCcchH
Q 009975          346 RVRLAIIEYIPLLASQLGVGFFDDKLGALCMQW-LQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYL  424 (521)
Q Consensus       346 ~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~-l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~  424 (521)
                      .||..++.+++.+=.--+.+.  -.+...+..+ -+|++++||.+|+.++..          ...-.|.+.+...|-+..
T Consensus       141 ~VRiqAv~aLsrlQ~d~~dee--~~v~n~l~~liqnDpS~EVRRaaLsnI~v----------dnsTlp~IveRarDV~~a  208 (892)
T KOG2025|consen  141 NVRIQAVLALSRLQGDPKDEE--CPVVNLLKDLIQNDPSDEVRRAALSNISV----------DNSTLPCIVERARDVSGA  208 (892)
T ss_pred             hHHHHHHHHHHHHhcCCCCCc--ccHHHHHHHHHhcCCcHHHHHHHHHhhcc----------CcccchhHHHHhhhhhHH
Confidence            899888888877653222221  1233333333 368889999988777632          234567777777776655


Q ss_pred             HHH-HHHHHHHHhhcccChHHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchHHHHhhHHHHHHHhcCCCCccH
Q 009975          425 YRM-TILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDV  503 (521)
Q Consensus       425 ~r~-~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~~~~~~~~l~~l~~D~~~~v  503 (521)
                      .|. .+-.++..+ +....+  .....-.+-.++.|....||.++.+.+..=.-.    .....++..|.++--....+|
T Consensus       209 nRrlvY~r~lpki-d~r~ls--i~krv~LlewgLnDRe~sVk~A~~d~il~~Wl~----~~dgni~ElL~~ldvsnss~v  281 (892)
T KOG2025|consen  209 NRRLVYERCLPKI-DLRSLS--IDKRVLLLEWGLNDREFSVKGALVDAILSGWLR----FSDGNILELLERLDVSNSSEV  281 (892)
T ss_pred             HHHHHHHHhhhhh-hhhhhh--HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhh----hccccHHHHHHHhccccchHH
Confidence            544 444444444 321111  123445566678888888888887776431111    112456677777655566677


Q ss_pred             HHHHHHHHHH
Q 009975          504 RFFATQAIQS  513 (521)
Q Consensus       504 r~~a~~al~~  513 (521)
                      +..|.+|+-+
T Consensus       282 avk~lealf~  291 (892)
T KOG2025|consen  282 AVKALEALFS  291 (892)
T ss_pred             HHHHHHHHHH
Confidence            7777777766

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=98.43  E-value=0.0001  Score=71.45  Aligned_cols=105  Identities=25%  Similarity=0.227  Sum_probs=49.9

Q ss_pred             hhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhC--CCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHH
Q 009975          172 CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG--PEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPEL  249 (521)
Q Consensus       172 ~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~--~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~  249 (521)
                      ..+.++..+.+..+.++-.||..+++.+..+....+  ++...+.+...+..-+.|.++.||..|+.+|..+-..-+.+.
T Consensus        82 lV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~dee  161 (892)
T KOG2025|consen   82 LVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDEE  161 (892)
T ss_pred             HHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCCc
Confidence            344444555555555666666666666555544222  122223344444445556666666666666655543221111


Q ss_pred             HHHhhhHHHHHhc-cCCcHHHHHHHHHHHH
Q 009975          250 AIQHILPCVKELS-SDSSQHVRSALASVIM  278 (521)
Q Consensus       250 ~~~~~~~~l~~~~-~d~~~~vr~~~~~~l~  278 (521)
                        -.+...+..++ .|+++.||+++..++.
T Consensus       162 --~~v~n~l~~liqnDpS~EVRRaaLsnI~  189 (892)
T KOG2025|consen  162 --CPVVNLLKDLIQNDPSDEVRRAALSNIS  189 (892)
T ss_pred             --ccHHHHHHHHHhcCCcHHHHHHHHHhhc
Confidence              11233333333 3566666666554443

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=98.43  E-value=2.4e-06  Score=66.99  Aligned_cols=107  Identities=16%  Similarity=0.058  Sum_probs=82.0

Q ss_pred             HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHh---CHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccCh--HH
Q 009975          370 KLGALCMQWLQDKVYSIRDAAANNLKRLAEEF---GPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS--EI  444 (521)
Q Consensus       370 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~---~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~--~~  444 (521)
                      .++|.+..++.++++.+|..++.+++.++...   .........+|.+.+++.++++++|..++.+++.++...+.  ..
T Consensus         7 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~   86 (120)
T cd00020           7 GGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLI   86 (120)
T ss_pred             CChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHH
Confidence            36677777888888888888888888887532   22233457888888888899999999999999999875432  11


Q ss_pred             -HhhcHHHHHHhhcCCCCchHHHHHHHHHHHHH
Q 009975          445 -TCSRLLPVVINASKDRVPNIKFNVAKVLQSLI  476 (521)
Q Consensus       445 -~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~  476 (521)
                       ....+++.+...+++.+..+|..++.++..++
T Consensus        87 ~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~  119 (120)
T cd00020          87 VLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA  119 (120)
T ss_pred             HHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence             23458899999999989999999999988765

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.43  E-value=4.5e-05  Score=74.05  Aligned_cols=131  Identities=18%  Similarity=0.155  Sum_probs=58.1

Q ss_pred             HHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHH-HhcCCChHHHHHHHHHhHHHHhhhChhhhHHHH
Q 009975          293 LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVE-LAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKL  371 (521)
Q Consensus       293 l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l  371 (521)
                      .=|.+.+++.|.+|-.|.+.+.++..-.-..|.    ...+..+.- ..+|.+.+||.+++.+++.++-.      .+..
T Consensus       520 Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgn----nkair~lLh~aVsD~nDDVrRaAVialGFVl~~------dp~~  589 (929)
T KOG2062|consen  520 ADPLIKELLRDKDPILRYGGMYTLALAYVGTGN----NKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFR------DPEQ  589 (929)
T ss_pred             hHHHHHHHhcCCchhhhhhhHHHHHHHHhccCc----hhhHHHhhcccccccchHHHHHHHHHheeeEec------Chhh
Confidence            344445555555555555554444332222221    122222222 23555555555555555443311      1223


Q ss_pred             HHHHHHHcCC-CcHHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhh
Q 009975          372 GALCMQWLQD-KVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLA  437 (521)
Q Consensus       372 ~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~  437 (521)
                      +|...++|.+ -|+-||-+++-+||-.+...|..    ..+..|..+..|+..-||+.|+-+++-+.
T Consensus       590 ~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~----eAi~lLepl~~D~~~fVRQgAlIa~amIm  652 (929)
T KOG2062|consen  590 LPSTVSLLSESYNPHVRYGAAMALGIACAGTGLK----EAINLLEPLTSDPVDFVRQGALIALAMIM  652 (929)
T ss_pred             chHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcH----HHHHHHhhhhcChHHHHHHHHHHHHHHHH
Confidence            3334444333 34555555555555555444422    23333444445555555555555555444

>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3

Probab=98.42  E-value=0.00018  Score=71.00  Aligned_cols=408  Identities=14%  Similarity=0.078  Sum_probs=221.2

Q ss_pred             HHhhhhHHhhhhcCchhHHHHHHHHHHHHHHhhcCh-hHHHHhHHHHHHHhhcCC-CCcchhhhhhhhhhhcCCCChHHH
Q 009975           18 AHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRE-SDLVDWYIPLVKRLAAGE-WFTARVSACGLFHIAYPSAPDILK   95 (521)
Q Consensus        18 ~~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~-~~~~~~l~p~i~~~~~~~-~~~~r~~~~~~~~~~~~~~~~~~~   95 (521)
                      +..+++.+..-++++...||...++.+..+-+.+.. ..+.==+-.++.++.+.+ ...+|..++..+...+++++.+.+
T Consensus        21 L~~~L~plLlkl~S~~~~VR~kV~eil~hin~Rik~~~~I~LPv~~Ll~q~~~~~~s~~vrnfsliyi~~g~~Rl~~~e~  100 (501)
T PF13001_consen   21 LDKYLPPLLLKLASPHASVRKKVIEILSHINKRIKSNPSIQLPVEALLKQYKEPSDSSFVRNFSLIYIEMGFDRLDDEER  100 (501)
T ss_pred             HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhccCCcCcCcHHHHHHHHhCCCCchHHHHHHHHHHHHhhhcCCHHHH
Confidence            445555554445567889999999999999988765 333322223334444433 566777777777888889988889


Q ss_pred             HHHHHHHHHhcCCCChH---HHHHHHHhHHHHHHhhCch---h--hHHHHHHHHHHhhcCCChhHHHHHHHHHHHHh---
Q 009975           96 TELRSIYTQLCQDDMPM---VRRSAASNLGKFAATVEPA---H--LKTDIMSIFEDLTQDDQDSVRLLAVEGCAALG---  164 (521)
Q Consensus        96 ~~l~~~l~~l~~~~~~~---vr~~a~~~l~~l~~~~~~~---~--~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~---  164 (521)
                      .+++|.+.+.++.....   .....+..+.-+++.....   .  .....-+--...+.+  .........-...+.   
T Consensus       101 ~~llP~ll~~is~~~~~~~~~~~~~~~~f~~~~k~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~l~~~~~~~~~l~  178 (501)
T PF13001_consen  101 RELLPSLLKGISKKPKQHQDSFLRLARLFNILLKLLPDWKEPPRGSKEDEKFRDSLGLSD--FCDDVFLAPWFSKFLLLQ  178 (501)
T ss_pred             HHHHHHHHHhhccCchhhhHHHHHHHHHHHHHhhcCCccccccccchhhhcHHHHHhhcc--hHHHHHcchhhccccccc
Confidence            99999988877643211   1111121222222221110   0  000000000000001  000000000000000   


Q ss_pred             -------hhcChhhhhhhhHH-HHHHhcC-CC-------ChHHHHHHHHHHHHHHHHhCCCcc-ccchHHHHHHhcCCCh
Q 009975          165 -------KLLEPQDCVAHILP-VIVNFSQ-DK-------SWRVRYMVANQLYELCEAVGPEPT-RMDLVPAYVRLLRDNE  227 (521)
Q Consensus       165 -------~~~~~~~~~~~l~~-~l~~~~~-d~-------~~~vR~~~~~~l~~i~~~~~~~~~-~~~l~~~l~~~l~d~~  227 (521)
                             .....+ ..+.+.. -...... ..       -.++|..+++-+       ..... ..+.++.++-...|+.
T Consensus       179 ~~~~~~~pgl~~~-~~~~ls~~~~~r~~~~~~~~~~~~~L~~~K~~il~fL-------~sg~f~d~~~~~~~liAsad~~  250 (501)
T PF13001_consen  179 PNRAYACPGLSPA-DPPGLSLSSAKRIEGKGPTFPSRENLTERKLAILKFL-------ASGFFPDEERFPPLLIASADSN  250 (501)
T ss_pred             cccccCCCCCCCC-CCCCCCHHhhhhhhccCCCCCcHHHHHHHHHHHHHHH-------HhcCCCcHhHHhheeeEEeCCc
Confidence                   000000 0011111 0000000 11       112343333333       22222 2356666666778888


Q ss_pred             HHHHHHHHHhHHHHHhhhCHHHHHHhhhHHHH--Hhcc-----CCcHHHHHHHHHHHHccccccChHHHHHhHHHHHHHh
Q 009975          228 AEVRIAAAGKVTKFCRILNPELAIQHILPCVK--ELSS-----DSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSL  300 (521)
Q Consensus       228 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~--~~~~-----d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~  300 (521)
                      .+|...|-..|..+....+...+.+.++..+.  ..-.     --++.+|.-....+.+-   .........++.++...
T Consensus       251 ~~V~~~ae~~LKr~~~~~ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS---~~Aa~~~~~~~~i~~~~  327 (501)
T PF13001_consen  251 SSVSDRAEDLLKRLSVSLEDPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKS---VIAATSFPNILQIVFDG  327 (501)
T ss_pred             chHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHh---HHHHhCCccHHHHHhcc
Confidence            89999999999888877777677666666665  2111     12456666655544432   11111234556666666


Q ss_pred             hcCC--ChHHHHHHHHHH---HHhhhhhchhhHhhhHHHHHHH----Hhc--------CCChHHHHHHHHHhHHHHhhhC
Q 009975          301 LKDE--FPDVRLNIISKL---DQVNQVIGIDLLSQSLLPAIVE----LAE--------DRHWRVRLAIIEYIPLLASQLG  363 (521)
Q Consensus       301 l~d~--~~~vr~~a~~~l---~~~~~~~~~~~~~~~~~~~l~~----~~~--------~~~~~vr~~~~~~l~~l~~~~~  363 (521)
                      +.+.  +...|..+++.+   .......+...+ +.+-|.+..    ..+        ..+...|..+.++++.+++..+
T Consensus       328 l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l-~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p  406 (501)
T PF13001_consen  328 LYSDNTNSKLKSLALQFIRGSSWIFKHISPQIL-KLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETLGLLAKRAP  406 (501)
T ss_pred             ccCCccccccchhcchhhhcchHHhhhcCHHHH-HHHHHHHHhcCccccccccccCCCcccHHHHHHHHHHHHHHHccCc
Confidence            6666  678888888888   777666665433 233333322    221        2456789999999999998876


Q ss_pred             hhhhH-HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHHHH-----HhhhHHHH-HhhhcCcchHHHHHHHHHHHHh
Q 009975          364 VGFFD-DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWA-----MQHITPQV-LEMINNPHYLYRMTILRAISLL  436 (521)
Q Consensus       364 ~~~~~-~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~-----~~~l~~~l-~~~l~~~~~~~r~~a~~~l~~l  436 (521)
                      .-... -.++..++..+.++.+++|.+.-++|..+...+....-     .......+ .....+....+|.+|+.+...+
T Consensus       407 ~l~~~d~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~R~~avk~an~~  486 (501)
T PF13001_consen  407 SLFSKDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLPDDEDEQKRLLLELLLLSYIQSEVRSCRYAAVKYANAC  486 (501)
T ss_pred             ccccccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHh
Confidence            54322 23556666667999999999999999999987743211     11122222 2234455678999999999888


Q ss_pred             hcc
Q 009975          437 APV  439 (521)
Q Consensus       437 ~~~  439 (521)
                      .+.
T Consensus       487 fpf  489 (501)
T PF13001_consen  487 FPF  489 (501)
T ss_pred             CCc
Confidence            763

4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].

>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3

Probab=98.41  E-value=0.00031  Score=69.36  Aligned_cols=406  Identities=12%  Similarity=0.081  Sum_probs=214.7

Q ss_pred             HHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCc-hhhHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHhhhcChhhh
Q 009975           95 KTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP-AHLKTDIMSIFEDLTQDD-QDSVRLLAVEGCAALGKLLEPQDC  172 (521)
Q Consensus        95 ~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~-~~~~~~l~~~l~~l~~d~-~~~vr~~a~~~l~~l~~~~~~~~~  172 (521)
                      .+.+++.+..-+.+++..||+.+.+.+..+-+.+.. ..+.=-+-.++.+..+.+ ...||..++-.+..-.+.++.+ .
T Consensus        21 L~~~L~plLlkl~S~~~~VR~kV~eil~hin~Rik~~~~I~LPv~~Ll~q~~~~~~s~~vrnfsliyi~~g~~Rl~~~-e   99 (501)
T PF13001_consen   21 LDKYLPPLLLKLASPHASVRKKVIEILSHINKRIKSNPSIQLPVEALLKQYKEPSDSSFVRNFSLIYIEMGFDRLDDE-E   99 (501)
T ss_pred             HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhccCCcCcCcHHHHHHHHhCCCCchHHHHHHHHHHHHhhhcCCHH-H
Confidence            444455444445567789999999999999888765 222222333444444444 5789999987777666777554 4


Q ss_pred             hhhhHHHHHHhcCCCC---hHHHHHHHHHHHHHHHHhCCCcccc-----chHHHHHHhcCCChHHHHHHHHHhHHHHHhh
Q 009975          173 VAHILPVIVNFSQDKS---WRVRYMVANQLYELCEAVGPEPTRM-----DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRI  244 (521)
Q Consensus       173 ~~~l~~~l~~~~~d~~---~~vR~~~~~~l~~i~~~~~~~~~~~-----~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~  244 (521)
                      ...++|.+.+.+....   .......+..+..+++.......+.     ..-+.-...+.|.  ..........+.+...
T Consensus       100 ~~~llP~ll~~is~~~~~~~~~~~~~~~~f~~~~k~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~l~~~~~~~~~l  177 (501)
T PF13001_consen  100 RRELLPSLLKGISKKPKQHQDSFLRLARLFNILLKLLPDWKEPPRGSKEDEKFRDSLGLSDF--CDDVFLAPWFSKFLLL  177 (501)
T ss_pred             HHHHHHHHHHhhccCchhhhHHHHHHHHHHHHHhhcCCccccccccchhhhcHHHHHhhcch--HHHHHcchhhcccccc
Confidence            5567777777665322   1222222223332333222110000     0000000111110  0000111111111000


Q ss_pred             h-----CHHHHHHhhhHHH-----HHhcc------C--CcHHHHHHHHHHHHccccccChHHHHHhHHHHHHHhhcCCCh
Q 009975          245 L-----NPELAIQHILPCV-----KELSS------D--SSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFP  306 (521)
Q Consensus       245 ~-----~~~~~~~~~~~~l-----~~~~~------d--~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~  306 (521)
                      .     ........-.|.+     .....      +  .-..+|...++.+..-.  ++    .+..++.++-...|++.
T Consensus       178 ~~~~~~~~pgl~~~~~~~ls~~~~~r~~~~~~~~~~~~~L~~~K~~il~fL~sg~--f~----d~~~~~~~liAsad~~~  251 (501)
T PF13001_consen  178 QPNRAYACPGLSPADPPGLSLSSAKRIEGKGPTFPSRENLTERKLAILKFLASGF--FP----DEERFPPLLIASADSNS  251 (501)
T ss_pred             ccccccCCCCCCCCCCCCCCHHhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhcC--CC----cHhHHhheeeEEeCCcc
Confidence            0     0000000000111     00000      0  01235555555554332  11    22455555556678888


Q ss_pred             HHHHHHHHHHHHhhhhhchhhHhhhHHHHHH--HHh-----cCCChHHHHHHHHHhHHHHhhhChhhhHHHHHHHHHHHc
Q 009975          307 DVRLNIISKLDQVNQVIGIDLLSQSLLPAIV--ELA-----EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWL  379 (521)
Q Consensus       307 ~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~--~~~-----~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l  379 (521)
                      +|...|-..+.++...+....+.+.++..+.  ...     .--++.+|..++..|..   ........+.++.++...+
T Consensus       252 ~V~~~ae~~LKr~~~~~ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~k---S~~Aa~~~~~~~~i~~~~l  328 (501)
T PF13001_consen  252 SVSDRAEDLLKRLSVSLEDPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSK---SVIAATSFPNILQIVFDGL  328 (501)
T ss_pred             hHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHH---hHHHHhCCccHHHHHhccc
Confidence            9988888888887766554444444444444  111     12356677666555543   3222222355667777777


Q ss_pred             CCC--cHHHHHHHHHHH---HHHHHHhCHHHHHhhhHHHH----Hhhhc--------CcchHHHHHHHHHHHHhhcccCh
Q 009975          380 QDK--VYSIRDAAANNL---KRLAEEFGPEWAMQHITPQV----LEMIN--------NPHYLYRMTILRAISLLAPVMGS  442 (521)
Q Consensus       380 ~d~--~~~vr~~a~~~l---~~l~~~~~~~~~~~~l~~~l----~~~l~--------~~~~~~r~~a~~~l~~l~~~~~~  442 (521)
                      ..+  +..+|..++..+   .......+.... +.+-|.+    ...+.        ..+...|..+.+++|.++.....
T Consensus       329 ~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l-~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~  407 (501)
T PF13001_consen  329 YSDNTNSKLKSLALQFIRGSSWIFKHISPQIL-KLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETLGLLAKRAPS  407 (501)
T ss_pred             cCCccccccchhcchhhhcchHHhhhcCHHHH-HHHHHHHHhcCccccccccccCCCcccHHHHHHHHHHHHHHHccCcc
Confidence            776  788999998888   777766665432 2222222    22331        23578999999999999986554


Q ss_pred             HHH-hhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchHHH-----H-hhHHHHHHHhcCCCCccHHHHHHHHHHH
Q 009975          443 EIT-CSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMV-----E-KTIRPCLVELTEDPDVDVRFFATQAIQS  513 (521)
Q Consensus       443 ~~~-~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~-----~-~~~~~~l~~l~~D~~~~vr~~a~~al~~  513 (521)
                      -+. .-.++..++..+.++.+++|.+.-++|+.+..++....-     . ..+.-.+.....+....+|..|.+-..+
T Consensus       408 l~~~d~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~R~~avk~an~  485 (501)
T PF13001_consen  408 LFSKDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLPDDEDEQKRLLLELLLLSYIQSEVRSCRYAAVKYANA  485 (501)
T ss_pred             cccccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhHHHHHHHHHHHHH
Confidence            331 245788899989999999999999999999988754221     1 1222233334456677777777665443

4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=98.39  E-value=0.00065  Score=66.01  Aligned_cols=287  Identities=13%  Similarity=0.126  Sum_probs=147.4

Q ss_pred             HHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccChHHHHHhHHHH
Q 009975          217 PAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPI  296 (521)
Q Consensus       217 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~  296 (521)
                      ..++...+- +..++..|...+..+....+.  ..+..+..+..+++|.+..||..++..++.++..-  ......+..+
T Consensus        26 ~~il~~~kg-~~k~K~Laaq~I~kffk~FP~--l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~--~~~v~kvaDv  100 (556)
T PF05918_consen   26 KEILDGVKG-SPKEKRLAAQFIPKFFKHFPD--LQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDN--PEHVSKVADV  100 (556)
T ss_dssp             HHHHHGGGS--HHHHHHHHHHHHHHHCC-GG--GHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T----T-HHHHHHH
T ss_pred             HHHHHHccC-CHHHHHHHHHHHHHHHhhChh--hHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhH--HHHHhHHHHH
Confidence            334444443 467788888888888777654  23556777888888888889998888888887542  2345677888


Q ss_pred             HHHhhcCCChHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChh------hhHHH
Q 009975          297 FLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG------FFDDK  370 (521)
Q Consensus       297 l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~------~~~~~  370 (521)
                      +.++|..+++..+..+-.+|..+...-....+ ..++..+... ...+..+|..++..+..-...++.+      .....
T Consensus       101 L~QlL~tdd~~E~~~v~~sL~~ll~~d~k~tL-~~lf~~i~~~-~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~e~~  178 (556)
T PF05918_consen  101 LVQLLQTDDPVELDAVKNSLMSLLKQDPKGTL-TGLFSQIESS-KSGDEQVRERALKFLREKLKPLKPELLTPQKEMEEF  178 (556)
T ss_dssp             HHHHTT---HHHHHHHHHHHHHHHHH-HHHHH-HHHHHHHH----HS-HHHHHHHHHHHHHHGGGS-TTTS---HHHHHH
T ss_pred             HHHHHhcccHHHHHHHHHHHHHHHhcCcHHHH-HHHHHHHHhc-ccCchHHHHHHHHHHHHHHhhCcHHHhhchHHHHHH
Confidence            88899888888877777777777664333222 2333333211 2345678888888776555444433      23456


Q ss_pred             HHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhC---HHHHHhhhHHHHHhhh--cC----cchHHHHHHHHHHHH----hh
Q 009975          371 LGALCMQWLQDKVYSIRDAAANNLKRLAEEFG---PEWAMQHITPQVLEMI--NN----PHYLYRMTILRAISL----LA  437 (521)
Q Consensus       371 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~---~~~~~~~l~~~l~~~l--~~----~~~~~r~~a~~~l~~----l~  437 (521)
                      +...+...|.|-..+-=...+..|..+- .++   .....+.+++.+.+..  ..    .+...=...+.++..    +.
T Consensus       179 i~~~ikkvL~DVTaeEF~l~m~lL~~lk-~~~~~~t~~g~qeLv~ii~eQa~Ld~~f~~sD~e~Idrli~C~~~Alp~fs  257 (556)
T PF05918_consen  179 IVDEIKKVLQDVTAEEFELFMSLLKSLK-IYGGKQTIEGRQELVDIIEEQADLDQPFDPSDPESIDRLISCLRQALPFFS  257 (556)
T ss_dssp             HHHHHHHHCTT--HHHHHHHHHHHHTSG-G---GSSHHHHHHHHHHHHHHHTTTS---SSSHHHHHHHHHHHHHHGGG-B
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHhCc-cccccCChHHHHHHHHHHHHHhccCCCCCCcCHHHHHHHHHHHHHhhHHhc
Confidence            7777778888733222122223333221 211   1223455666666432  11    122222223333333    33


Q ss_pred             cccChHHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchHHHHhhHHHHHHHhc------CCCCccHHHHHHHHH
Q 009975          438 PVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELT------EDPDVDVRFFATQAI  511 (521)
Q Consensus       438 ~~~~~~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~~~~~~~~l~~l~------~D~~~~vr~~a~~al  511 (521)
                      .......|..++...++.-+++-....|...++++..++...+... ...++|.+..++      .+..++..+.-.+|+
T Consensus       258 ~~v~Sskfv~y~~~kvlP~l~~l~e~~kl~lLk~lAE~s~~~~~~d-~~~~L~~i~~~L~~ymP~~~~~~~l~fs~vEcL  336 (556)
T PF05918_consen  258 RGVSSSKFVNYMCEKVLPKLSDLPEDRKLDLLKLLAELSPFCGAQD-ARQLLPSIFQLLKKYMPSKKTEPKLQFSYVECL  336 (556)
T ss_dssp             TTB--HHHHHHHHHHTCCCTT-----HHHHHHHHHHHHHTT----T-HHHHHHHHHHHHHTTS----------HHHHHHH
T ss_pred             CCCChHHHHHHHHHHhcCChhhCChHHHHHHHHHHHHHcCCCCccc-HHHHHHHHHHHHHHhCCCCCCCCcccchHhhHH
Confidence            3333444556666666667777777889999999999999877655 344445544432      234555555555554


Q ss_pred             H
Q 009975          512 Q  512 (521)
Q Consensus       512 ~  512 (521)
                      -
T Consensus       337 L  337 (556)
T PF05918_consen  337 L  337 (556)
T ss_dssp             H
T ss_pred             H
Confidence            3

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=98.39  E-value=6.5e-05  Score=66.22  Aligned_cols=189  Identities=9%  Similarity=0.091  Sum_probs=123.4

Q ss_pred             chHHHHHHhcC-CChHHHHHHHHHhHHHHHhhhCHHHHHH--hhhHHHHHhccCCcHHHHHHHHHHHHccccccChHHHH
Q 009975          214 DLVPAYVRLLR-DNEAEVRIAAAGKVTKFCRILNPELAIQ--HILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATI  290 (521)
Q Consensus       214 ~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~--~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~  290 (521)
                      +-+..+..+++ ..++.++..+..+++..+.+.....+..  ..++.+..++.++++.+|..++.++..++.........
T Consensus        12 ~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~I   91 (254)
T PF04826_consen   12 QELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQI   91 (254)
T ss_pred             HHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHH
Confidence            33455666665 4567888888888888666443332222  36788888899999999998988888887665443333


Q ss_pred             HhHHHHHHHh-hc-CCChHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhC--hhh
Q 009975          291 EQLLPIFLSL-LK-DEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG--VGF  366 (521)
Q Consensus       291 ~~l~~~l~~~-l~-d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~--~~~  366 (521)
                      +..++.+.+. .. ..+.+++..++..|..+.-.-.........+|.+..++...+..+|..+++.+..++..-.  .+.
T Consensus        92 k~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np~~~~~L  171 (254)
T PF04826_consen   92 KMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSENPDMTREL  171 (254)
T ss_pred             HHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhccCHHHHHHH
Confidence            3334444442 22 2367888888888888754333233335567888888888888899999888888876532  233


Q ss_pred             hHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHHHHhC
Q 009975          367 FDDKLGALCMQWLQDK-VYSIRDAAANNLKRLAEEFG  402 (521)
Q Consensus       367 ~~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~  402 (521)
                      +....++.++.++... +.++...++..+..+...++
T Consensus       172 l~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~  208 (254)
T PF04826_consen  172 LSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIK  208 (254)
T ss_pred             HhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhC
Confidence            4444556666666653 56666667766666665554

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=98.38  E-value=0.0037  Score=62.82  Aligned_cols=490  Identities=13%  Similarity=0.114  Sum_probs=247.8

Q ss_pred             hhhhHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHHHhHHHHHHHhhcCCCCcchhhhhhhhhh----hcC-------
Q 009975           20 VLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHI----AYP-------   88 (521)
Q Consensus        20 ~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~p~i~~~~~~~~~~~r~~~~~~~~~----~~~-------   88 (521)
                      .++..|...+ +.|+++|..|...+..+...-+   +...+-....+  ++.....|..+...+..    .+.       
T Consensus         5 ~ii~~L~~~l-s~d~~vr~~AE~~l~qle~~~~---f~~aL~~va~~--~~~sl~lRQ~A~v~L~~yie~hW~~~~E~fr   78 (1005)
T KOG2274|consen    5 AIIELLSGSL-SADQNVRSQAETQLKQLELTEG---FGVALAEVAAN--KDASLPLRQIALVLLKRYIEKHWSPNFEAFR   78 (1005)
T ss_pred             HHHHHHHhhc-CCChhHHHHHHHHHhccccchH---HHHHHHHHHhC--cccCchHHHHHHHHHHHHHHHhCCChHhhcc
Confidence            3555665555 5789999999998877665322   22222211110  11233445444432221    111       


Q ss_pred             ---CCChHHHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhh
Q 009975           89 ---SAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGK  165 (521)
Q Consensus        89 ---~~~~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~  165 (521)
                         +.+++.+..+...+.+++-+++..+|.+++.++..++..-- +..|++++|.+.+++.+.+..--..|.++|..+..
T Consensus        79 ~~~~~~e~~K~~IRe~Ll~~l~~sn~ki~~~vay~is~Ia~~D~-Pd~WpElv~~i~~~l~~~n~n~i~~am~vL~el~~  157 (1005)
T KOG2274|consen   79 YPLIVSEEVKALIREQLLNLLDDSNSKIRSAVAYAISSIAAVDY-PDEWPELVPFILKLLSSGNENSIHGAMRVLAELSD  157 (1005)
T ss_pred             CCCcccHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHhccC-chhhHHHHHHHHHHHhccchhhhhhHHHHHHHHHH
Confidence               12334566677777777778889999999999999886533 56799999999999998888888899999998876


Q ss_pred             hcChhhhh---hhhHHHHH---HhcCCCChHHHHHHHH--HHHHHHHHhCC--Cc-------cccchHHHHHHhc-----
Q 009975          166 LLEPQDCV---AHILPVIV---NFSQDKSWRVRYMVAN--QLYELCEAVGP--EP-------TRMDLVPAYVRLL-----  223 (521)
Q Consensus       166 ~~~~~~~~---~~l~~~l~---~~~~d~~~~vR~~~~~--~l~~i~~~~~~--~~-------~~~~l~~~l~~~l-----  223 (521)
                      .+..+...   +-.++-+.   .+....+...|..++.  .+......+..  +.       ....+++.+...+     
T Consensus       158 ev~~ee~~~~~~~~l~~m~~~f~~~~~~s~~~~~~aa~~~lf~sc~~li~~~~e~~~~~~~~~~s~~l~~~~~~l~h~l~  237 (1005)
T KOG2274|consen  158 EVDVEEMFFVGPVSLAEMYRIFALTIVYSIITRLGAARGKLFTSCLTLITNVEEVWAEHVKVFLSQILNQFMDILEHPLQ  237 (1005)
T ss_pred             HHHHHHHhcccccchhhhhhhhhhccccchhHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence            65332111   11222222   2333344444444442  22222221110  00       0112233333222     


Q ss_pred             -CC-ChHHHHHHHHHhHHHHHhhhCHH--HHHHhhhHH------------HHHhc----------cCCcHH---HHHHH-
Q 009975          224 -RD-NEAEVRIAAAGKVTKFCRILNPE--LAIQHILPC------------VKELS----------SDSSQH---VRSAL-  273 (521)
Q Consensus       224 -~d-~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~~~~------------l~~~~----------~d~~~~---vr~~~-  273 (521)
                       .+ .++..|...++++..+.+..+.-  .+.....+.            +..-.          .|.++.   +.... 
T Consensus       238 ~~~g~~~~~~~eilk~~t~l~~nfp~~~~~~~~~~~~~vw~~~~~~~~~yir~~V~~~e~~~~~~~dsd~e~~~~~~l~i  317 (1005)
T KOG2274|consen  238 RNDGSDFSLRMEILKCLTQLVENFPSLINPFMMGMFSIVWQTLEKILAVYVRESVNGTEDSYDARYDSDPEEKSVETLVI  317 (1005)
T ss_pred             ccccchHHHHHHHHHHHHHHHHhhHHhhhHHHHhhhhHHHHHHHHHHhhhhhhhccccccCcccccCCchhhhChHHhhh
Confidence             12 34567777778887777765431  111111111            11100          111111   11111 


Q ss_pred             --HHHHHccccccCh-HHH---HHhHHHHH------------------HHhhcCCC--hHHHHHHHHHHHHhhhhhchhh
Q 009975          274 --ASVIMGMAPLLGK-DAT---IEQLLPIF------------------LSLLKDEF--PDVRLNIISKLDQVNQVIGIDL  327 (521)
Q Consensus       274 --~~~l~~i~~~~~~-~~~---~~~l~~~l------------------~~~l~d~~--~~vr~~a~~~l~~~~~~~~~~~  327 (521)
                        ++.+..+....-- ...   ..++++.+                  .....|++  ..+|..+...+-.+...+|.+.
T Consensus       318 ~i~eF~s~i~t~~~~~~ti~~~l~~lI~~~v~y~Qlseeqie~w~sD~~~fV~dEd~~~~~~~~~rd~~~~v~~~f~~~~  397 (1005)
T KOG2274|consen  318 QIVEFLSTIVTNRFLSKTIKKNLPELIYQLVAYLQLSEEQIEVWTSDVNQFVADEDDGYTARISVRDLLLEVITTFGNEG  397 (1005)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHhccHHHhhccCCCCchhhhhHHHHHHHHHHhccchh
Confidence              1111111111000 000   00111111                  11122222  2456555555556665555433


Q ss_pred             HhhhHHHH----HHH------HhcCCChHHHHHHHHHhHHHHhhhChhhhHHHHHHHHHHHcC-CCcHHHHHHHHHHHHH
Q 009975          328 LSQSLLPA----IVE------LAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQ-DKVYSIRDAAANNLKR  396 (521)
Q Consensus       328 ~~~~~~~~----l~~------~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~  396 (521)
                      . ..+...    +..      +.+...|....+.+.+.......-..+.....+...+...+. ...+..-..++.+++.
T Consensus       398 i-~~i~~a~~~~~~es~at~~~~~~~~wk~qea~l~a~~~~~~~~~~dd~l~~l~~~~~~~l~~~e~P~Ll~Ra~~~i~~  476 (1005)
T KOG2274|consen  398 I-NPIQDAAGRHFQESQATYLFNNESWWKIQEALLVAAESVRIDDANDDKLIELTIMIDNGLVYQESPFLLLRAFLTISK  476 (1005)
T ss_pred             h-hHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcccCcchHHHHHHHHHHHHhhcccccCHHHHHHHHHHHHH
Confidence            2 111111    211      113345666666655554444111111112223333333332 2334444467777776


Q ss_pred             HHHHh--CHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChHHHhhcHHHHHHhhcCCCCchHHHHHHHHHHH
Q 009975          397 LAEEF--GPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQS  474 (521)
Q Consensus       397 l~~~~--~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~  474 (521)
                      +....  ........+-..+.....+....+|..|++++...+..---..+.+.++..+.++..+....|=....++|+.
T Consensus       477 fs~~~~~~~~~~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls~  556 (1005)
T KOG2274|consen  477 FSSSTVINPQLLQHFLNATVNALTMDVPPPVKISAVRAFCGYCKVKVLLSLQPMILDGLLQLASKSSDEVLVLLMEALSS  556 (1005)
T ss_pred             HHhhhccchhHHHHHHHHHHHhhccCCCCchhHHHHHHHHhccCceeccccchHHHHHHHHHcccccHHHHHHHHHHHHH
Confidence            66552  2222222222233334566677889999998888774322233568889999999999898998899999988


Q ss_pred             HHhhhchH---HHHhhHHHHHHHh--cCCCCccHHHHHHHHHHHHHHhh
Q 009975          475 LIPIVDQS---MVEKTIRPCLVEL--TEDPDVDVRFFATQAIQSIDHVM  518 (521)
Q Consensus       475 ~~~~~~~~---~~~~~~~~~l~~l--~~D~~~~vr~~a~~al~~l~~~~  518 (521)
                      +++. .++   ...+.+.|....+  ....|+-|-..+...++.+.+.+
T Consensus       557 vv~~-dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~  604 (1005)
T KOG2274|consen  557 VVKL-DPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIA  604 (1005)
T ss_pred             Hhcc-ChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH
Confidence            8764 332   2235566655542  23334477788888888777654

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=98.38  E-value=0.00062  Score=59.98  Aligned_cols=317  Identities=15%  Similarity=0.173  Sum_probs=179.2

Q ss_pred             HHHHHHHHhhhcChhhhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCc-------cccchHHHHHHhcCCChH
Q 009975          156 AVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP-------TRMDLVPAYVRLLRDNEA  228 (521)
Q Consensus       156 a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~-------~~~~l~~~l~~~l~d~~~  228 (521)
                      .+.++..+.+...+-...+.+.|.+...+..++..|+..+++.++.+......+.       ....+++.+..++..++.
T Consensus        63 cVscLERLfkakegahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggedd  142 (524)
T KOG4413|consen   63 CVSCLERLFKAKEGAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDD  142 (524)
T ss_pred             HHHHHHHHHhhccchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcH
Confidence            5556666655543333455677777777777777788888888777776554322       235788888889988899


Q ss_pred             HHHHHHHHhHHHHHhhhCH-HHH-HHhhhH--HHHHhccCCcHHHHHHHHHHHHccccccC---hHHHHHhHHHHHHHhh
Q 009975          229 EVRIAAAGKVTKFCRILNP-ELA-IQHILP--CVKELSSDSSQHVRSALASVIMGMAPLLG---KDATIEQLLPIFLSLL  301 (521)
Q Consensus       229 ~vr~~a~~~l~~l~~~~~~-~~~-~~~~~~--~l~~~~~d~~~~vr~~~~~~l~~i~~~~~---~~~~~~~l~~~l~~~l  301 (521)
                      +|-++|++.+..++..-.. +.+ -..+..  .+..+....+.-+|....+.+-.+....+   .+...+-++..+..-+
T Consensus       143 eVAkAAiesikrialfpaaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaEl  222 (524)
T KOG4413|consen  143 EVAKAAIESIKRIALFPAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAEL  222 (524)
T ss_pred             HHHHHHHHHHHHHHhcHHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHh
Confidence            9999999999888764211 110 011111  11222233344456555555555543322   2333445666666555


Q ss_pred             cC-CChHHHHHHHHHHHHhhhhh-chhhH-hhhHHHHHHHHh----cCCChHHHHHHHHHhHHHHhhhChhhhHH----H
Q 009975          302 KD-EFPDVRLNIISKLDQVNQVI-GIDLL-SQSLLPAIVELA----EDRHWRVRLAIIEYIPLLASQLGVGFFDD----K  370 (521)
Q Consensus       302 ~d-~~~~vr~~a~~~l~~~~~~~-~~~~~-~~~~~~~l~~~~----~~~~~~vr~~~~~~l~~l~~~~~~~~~~~----~  370 (521)
                      +- .+.-|+..+++-...++..- |.+.+ .+.++..+.+.+    .|+....|     .+..+.+.+|+....+    .
T Consensus       223 kGteDtLVianciElvteLaeteHgreflaQeglIdlicnIIsGadsdPfekfr-----almgfgkffgkeaimdvseea  297 (524)
T KOG4413|consen  223 KGTEDTLVIANCIELVTELAETEHGREFLAQEGLIDLICNIISGADSDPFEKFR-----ALMGFGKFFGKEAIMDVSEEA  297 (524)
T ss_pred             cCCcceeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHH-----HHHHHHHHhcchHHhhcCHHH
Confidence            54 56677888877777665432 22222 245666666654    33334443     3344555666543221    1


Q ss_pred             H-------HHHHHHHcCCCcHHHHHHHHHHHHHHHHHh-CHHHHHhh---hHHHHHhhhcCcc-hHHHHHHHHHHHHhhc
Q 009975          371 L-------GALCMQWLQDKVYSIRDAAANNLKRLAEEF-GPEWAMQH---ITPQVLEMINNPH-YLYRMTILRAISLLAP  438 (521)
Q Consensus       371 l-------~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~-~~~~~~~~---l~~~l~~~l~~~~-~~~r~~a~~~l~~l~~  438 (521)
                      +       +.-.+..+.-++++...+|+.++|.+.... |.+...+.   -...+.....|.| -.-...++.++..++.
T Consensus       298 icealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteGadlllkTgppaaehllarafdqnahakqeaaihaLaaIag  377 (524)
T KOG4413|consen  298 ICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAG  377 (524)
T ss_pred             HHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhhc
Confidence            1       112234456677888899999999887554 33322211   2222333333333 2345677777777775


Q ss_pred             ccC--hHH--------------Hh-----h--cHHHHHHhhcCCCCchHHHHHHHHHHHHHh
Q 009975          439 VMG--SEI--------------TC-----S--RLLPVVINASKDRVPNIKFNVAKVLQSLIP  477 (521)
Q Consensus       439 ~~~--~~~--------------~~-----~--~il~~l~~~l~d~~~~VR~~a~~~l~~~~~  477 (521)
                      ...  ++.              |.     .  .=+..+...++.|.+.+|.++.+++..++.
T Consensus       378 elrlkpeqitDgkaeerlrclifdaaaqstkldPleLFlgilqQpfpEihcAalktfTAiaa  439 (524)
T KOG4413|consen  378 ELRLKPEQITDGKAEERLRCLIFDAAAQSTKLDPLELFLGILQQPFPEIHCAALKTFTAIAA  439 (524)
T ss_pred             cccCChhhccccHHHHHHHHHHHHHHhhccCCChHHHHHHHHcCCChhhHHHHHHHHHHHHc
Confidence            321  111              10     0  112344556788899999999999988764

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=98.37  E-value=0.0014  Score=57.81  Aligned_cols=333  Identities=17%  Similarity=0.186  Sum_probs=177.8

Q ss_pred             hhhhhhcCCC-ChHHHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCch-------hhHHHHHHHHHHhhcCCChhH
Q 009975           81 GLFHIAYPSA-PDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPA-------HLKTDIMSIFEDLTQDDQDSV  152 (521)
Q Consensus        81 ~~~~~~~~~~-~~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~-------~~~~~l~~~l~~l~~d~~~~v  152 (521)
                      ..+..+++.. +-+....++|.++.-+..++..|+.-+++.++.+.+.....       ....++++++......++..|
T Consensus        65 scLERLfkakegahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeV  144 (524)
T KOG4413|consen   65 SCLERLFKAKEGAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEV  144 (524)
T ss_pred             HHHHHHHhhccchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHH
Confidence            4444444322 23356778888988888888999999999999998776531       235678999999999999999


Q ss_pred             HHHHHHHHHHHhhhcCh-h-hhhhhhHHH--HHHhcCCCChHHHHHHHHHHHHHHHHhC---CCccccchHHHHHHhcCC
Q 009975          153 RLLAVEGCAALGKLLEP-Q-DCVAHILPV--IVNFSQDKSWRVRYMVANQLYELCEAVG---PEPTRMDLVPAYVRLLRD  225 (521)
Q Consensus       153 r~~a~~~l~~l~~~~~~-~-~~~~~l~~~--l~~~~~d~~~~vR~~~~~~l~~i~~~~~---~~~~~~~l~~~l~~~l~d  225 (521)
                      ..+|++.+..++..-.. + .+...+..-  +..+..--+.-+|..+.+.+.++....+   .+...+.++..+..-++.
T Consensus       145 AkAAiesikrialfpaaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkG  224 (524)
T KOG4413|consen  145 AKAAIESIKRIALFPAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKG  224 (524)
T ss_pred             HHHHHHHHHHHHhcHHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcC
Confidence            99999999988754111 0 001111111  1111122244566667766666554322   223346677777766654


Q ss_pred             -ChHHHHHHHHHhHHHHHhhh-CH-----HHHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccChHHHH--------
Q 009975          226 -NEAEVRIAAAGKVTKFCRIL-NP-----ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATI--------  290 (521)
Q Consensus       226 -~~~~vr~~a~~~l~~l~~~~-~~-----~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~--------  290 (521)
                       ++.-|+..+++....++..- |.     +...+.+...+...-+|+..+.|.     +..+.+.+|+...+        
T Consensus       225 teDtLVianciElvteLaeteHgreflaQeglIdlicnIIsGadsdPfekfra-----lmgfgkffgkeaimdvseeaic  299 (524)
T KOG4413|consen  225 TEDTLVIANCIELVTELAETEHGREFLAQEGLIDLICNIISGADSDPFEKFRA-----LMGFGKFFGKEAIMDVSEEAIC  299 (524)
T ss_pred             CcceeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHH-----HHHHHHHhcchHHhhcCHHHHH
Confidence             66678888888888877653 22     222233333333333455555443     22333334443322        


Q ss_pred             HhH---HHHHHHhhcCCChHHHHHHHHHHHHhhhhh-chhhHhhhHHHHHHH---HhcCCChH-HHHHHHHHhHHHHhhh
Q 009975          291 EQL---LPIFLSLLKDEFPDVRLNIISKLDQVNQVI-GIDLLSQSLLPAIVE---LAEDRHWR-VRLAIIEYIPLLASQL  362 (521)
Q Consensus       291 ~~l---~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~-~~~~~~~~~~~~l~~---~~~~~~~~-vr~~~~~~l~~l~~~~  362 (521)
                      +.+   +.-.+.+....++.....|+.+++.+.... |.+.+...--|....   ...|.+.. -..+++.++..++...
T Consensus       300 ealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteGadlllkTgppaaehllarafdqnahakqeaaihaLaaIagel  379 (524)
T KOG4413|consen  300 EALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGEL  379 (524)
T ss_pred             HHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhhccc
Confidence            111   122234455566777777777777766543 333222211122221   12222222 2233344444443332


Q ss_pred             ChhhhHHHHHHHHHHHcCCCcHH--HHHHHHHHHHHHHHHhCHHHHHhhh--HHHHHhhhcCcchHHHHHHHHHHHHhhc
Q 009975          363 GVGFFDDKLGALCMQWLQDKVYS--IRDAAANNLKRLAEEFGPEWAMQHI--TPQVLEMINNPHYLYRMTILRAISLLAP  438 (521)
Q Consensus       363 ~~~~~~~~l~~~l~~~l~d~~~~--vr~~a~~~l~~l~~~~~~~~~~~~l--~~~l~~~l~~~~~~~r~~a~~~l~~l~~  438 (521)
                      ....          +-..|....  .|.....+.+.          ...+  ...+...++.+.+.+|.+++..+..++.
T Consensus       380 rlkp----------eqitDgkaeerlrclifdaaaq----------stkldPleLFlgilqQpfpEihcAalktfTAiaa  439 (524)
T KOG4413|consen  380 RLKP----------EQITDGKAEERLRCLIFDAAAQ----------STKLDPLELFLGILQQPFPEIHCAALKTFTAIAA  439 (524)
T ss_pred             cCCh----------hhccccHHHHHHHHHHHHHHhh----------ccCCChHHHHHHHHcCCChhhHHHHHHHHHHHHc
Confidence            2110          111232222  22221111111          1111  2344556778889999999999999885

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=98.37  E-value=0.0014  Score=63.75  Aligned_cols=283  Identities=14%  Similarity=0.161  Sum_probs=151.3

Q ss_pred             ChhHHHHHHHHHHHHhhhcChhhhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChH
Q 009975          149 QDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEA  228 (521)
Q Consensus       149 ~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~  228 (521)
                      +...+..|...+....+.+++  ....-+..+..+|+|.+..||..+++.|..+++.-+  .....+..++.+++..+++
T Consensus        35 ~~k~K~Laaq~I~kffk~FP~--l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~--~~v~kvaDvL~QlL~tdd~  110 (556)
T PF05918_consen   35 SPKEKRLAAQFIPKFFKHFPD--LQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNP--EHVSKVADVLVQLLQTDDP  110 (556)
T ss_dssp             -HHHHHHHHHHHHHHHCC-GG--GHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T----T-HHHHHHHHHHHTT---H
T ss_pred             CHHHHHHHHHHHHHHHhhChh--hHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHH--HHHhHHHHHHHHHHhcccH
Confidence            567888999999999988854  566788889999999999999999999999886422  2346789999999998888


Q ss_pred             HHHHHHHHhHHHHHhhhCHHHHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccCh------HHHHHhHHHHHHHhhc
Q 009975          229 EVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK------DATIEQLLPIFLSLLK  302 (521)
Q Consensus       229 ~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~------~~~~~~l~~~l~~~l~  302 (521)
                      ....++-.+|..+... ++......++..+..- ...+..+|.-++..+..-...++.      +...+.++..+.+.++
T Consensus       111 ~E~~~v~~sL~~ll~~-d~k~tL~~lf~~i~~~-~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~e~~i~~~ikkvL~  188 (556)
T PF05918_consen  111 VELDAVKNSLMSLLKQ-DPKGTLTGLFSQIESS-KSGDEQVRERALKFLREKLKPLKPELLTPQKEMEEFIVDEIKKVLQ  188 (556)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH----HS-HHHHHHHHHHHHHHGGGS-TTTS---HHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHhc-ccCchHHHHHHHHHHHHHHhhCcHHHhhchHHHHHHHHHHHHHHHH
Confidence            8888888888777764 3333333333333211 134567888888777543222221      3345677888888888


Q ss_pred             CCChHHHHHHHHHHHHhhh---hhchhhHhhhHHHHHHHHhc------CCChHHHHHHHHHh----HHHHhhhChhhhHH
Q 009975          303 DEFPDVRLNIISKLDQVNQ---VIGIDLLSQSLLPAIVELAE------DRHWRVRLAIIEYI----PLLASQLGVGFFDD  369 (521)
Q Consensus       303 d~~~~vr~~a~~~l~~~~~---~~~~~~~~~~~~~~l~~~~~------~~~~~vr~~~~~~l----~~l~~~~~~~~~~~  369 (521)
                      |-..+-=......|..+--   .-... -.+.+++.+.+...      ..+...-..++.++    ..+........|..
T Consensus       189 DVTaeEF~l~m~lL~~lk~~~~~~t~~-g~qeLv~ii~eQa~Ld~~f~~sD~e~Idrli~C~~~Alp~fs~~v~Sskfv~  267 (556)
T PF05918_consen  189 DVTAEEFELFMSLLKSLKIYGGKQTIE-GRQELVDIIEEQADLDQPFDPSDPESIDRLISCLRQALPFFSRGVSSSKFVN  267 (556)
T ss_dssp             T--HHHHHHHHHHHHTSGG---GSSHH-HHHHHHHHHHHHHTTTS---SSSHHHHHHHHHHHHHHGGG-BTTB--HHHHH
T ss_pred             hccHHHHHHHHHHHHhCccccccCChH-HHHHHHHHHHHHhccCCCCCCcCHHHHHHHHHHHHHhhHHhcCCCChHHHHH
Confidence            8543222222233332211   11111 12456666665331      12222222333333    33333333333444


Q ss_pred             HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhc------Cc----chHHHHHHHHHHHHhhcc
Q 009975          370 KLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMIN------NP----HYLYRMTILRAISLLAPV  439 (521)
Q Consensus       370 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~------~~----~~~~r~~a~~~l~~l~~~  439 (521)
                      ++..-++..+.+-..+.|...++.++.++...|... ...++|.+.+.+.      ..    ++..-++.+.++..++..
T Consensus       268 y~~~kvlP~l~~l~e~~kl~lLk~lAE~s~~~~~~d-~~~~L~~i~~~L~~ymP~~~~~~~l~fs~vEcLL~afh~La~k  346 (556)
T PF05918_consen  268 YMCEKVLPKLSDLPEDRKLDLLKLLAELSPFCGAQD-ARQLLPSIFQLLKKYMPSKKTEPKLQFSYVECLLYAFHQLARK  346 (556)
T ss_dssp             HHHHHTCCCTT-----HHHHHHHHHHHHHTT----T-HHHHHHHHHHHHHTTS----------HHHHHHHHHHHHHHHTT
T ss_pred             HHHHHhcCChhhCChHHHHHHHHHHHHHcCCCCccc-HHHHHHHHHHHHHHhCCCCCCCCcccchHhhHHHHHHHHHhhh
Confidence            443333334455566778888999999988877544 4445555554432      11    345556666666666653

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>KOG2956 consensus CLIP-associating protein [General function prediction only]

Probab=98.36  E-value=5.4e-05  Score=69.76  Aligned_cols=187  Identities=15%  Similarity=0.203  Sum_probs=108.0

Q ss_pred             HHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCc---hhhHHHHHHHHHHhhcC-CChhHHHHHHHHHHHHhhhcChh
Q 009975           95 KTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP---AHLKTDIMSIFEDLTQD-DQDSVRLLAVEGCAALGKLLEPQ  170 (521)
Q Consensus        95 ~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~l~~d-~~~~vr~~a~~~l~~l~~~~~~~  170 (521)
                      ...+...+.++-.++...-|+.|...|..+...-+.   +.+..+|+..+.+.+.| .++..|..|.+.|..++..-+..
T Consensus       285 ~~~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~  364 (516)
T KOG2956|consen  285 SALVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPAR  364 (516)
T ss_pred             hHHHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHh
Confidence            345556666666666667788888777776644322   23344556666666666 77888999999999888775432


Q ss_pred             --hhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHH
Q 009975          171 --DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE  248 (521)
Q Consensus       171 --~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~  248 (521)
                        ++....+.-+++...|....|-..|.+....++....+..-...+.|.+..    .+...-.++++.+..+.+.+..+
T Consensus       365 l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~I~~i~~~Ilt----~D~~~~~~~iKm~Tkl~e~l~~E  440 (516)
T KOG2956|consen  365 LFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQCIVNISPLILT----ADEPRAVAVIKMLTKLFERLSAE  440 (516)
T ss_pred             hhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhHHHHHhhHHhc----CcchHHHHHHHHHHHHHhhcCHH
Confidence              122223333444555666655555666544444433332222223333333    23344456666777777766655


Q ss_pred             H---HHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccC
Q 009975          249 L---AIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLG  285 (521)
Q Consensus       249 ~---~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~  285 (521)
                      .   ..+.+.|.+.+..++.+..||..++.|+..+...+|
T Consensus       441 eL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG  480 (516)
T KOG2956|consen  441 ELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVG  480 (516)
T ss_pred             HHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHh
Confidence            3   234456666666666666666666666666665555

>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional

Probab=98.33  E-value=0.00077  Score=74.82  Aligned_cols=289  Identities=12%  Similarity=0.159  Sum_probs=173.7

Q ss_pred             HHHHHHhHHHHHHhhCc------hhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcCh-hh-----hhhhhHHHHH
Q 009975          114 RRSAASNLGKFAATVEP------AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP-QD-----CVAHILPVIV  181 (521)
Q Consensus       114 r~~a~~~l~~l~~~~~~------~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~-~~-----~~~~l~~~l~  181 (521)
                      |......|..++...-.      ..+|..+.+.+.......+..++..|+..|..++-.+-+ ++     ..++++..+.
T Consensus      1109 r~FsLqKLveIa~~Nm~Rirl~W~~iW~~l~~hf~~vg~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe 1188 (1780)
T PLN03076       1109 RVFSLTKIVEIAHYNMNRIRLVWSSIWHVLSDFFVTIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFV 1188 (1780)
T ss_pred             chhHHHHHHHHHHhcccchheehHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHH
Confidence            55555555555543322      235566777777765556678999999999998876443 22     2233443333


Q ss_pred             H-hcCCCChHHHHHHHHHHHHHHHHhCCCc--cccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhh----CH--HHHHH
Q 009975          182 N-FSQDKSWRVRYMVANQLYELCEAVGPEP--TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRIL----NP--ELAIQ  252 (521)
Q Consensus       182 ~-~~~d~~~~vR~~~~~~l~~i~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~----~~--~~~~~  252 (521)
                      . +.+..+..+|..+.+++.++....+...  .|..++.++.....|+++.+-..|.+++..+....    ..  .....
T Consensus      1189 ~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~ 1268 (1780)
T PLN03076       1189 IVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFT 1268 (1780)
T ss_pred             HHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHH
Confidence            3 4556788999999999999987666433  46788888888888888888888888887665431    11  12334


Q ss_pred             hhhHHHHHhccCC-cHHHHHHHHHHHHcccccc-----------------------------------ChHHHHHhHHHH
Q 009975          253 HILPCVKELSSDS-SQHVRSALASVIMGMAPLL-----------------------------------GKDATIEQLLPI  296 (521)
Q Consensus       253 ~~~~~l~~~~~d~-~~~vr~~~~~~l~~i~~~~-----------------------------------~~~~~~~~l~~~  296 (521)
                      .++..+.++.... +..+-..++..+..++..+                                   +.+.....++|.
T Consensus      1269 DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pL 1348 (1780)
T PLN03076       1269 DCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPL 1348 (1780)
T ss_pred             HHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhccccccccccccccccccccccccccccccccccchhHHHHHHHH
Confidence            4555555554322 1222222222222111000                                   111112346666


Q ss_pred             HHHh---hcCCChHHHHHHHHHHHHhhhhhchh----h----HhhhHHHHHHHHhc----------------------C-
Q 009975          297 FLSL---LKDEFPDVRLNIISKLDQVNQVIGID----L----LSQSLLPAIVELAE----------------------D-  342 (521)
Q Consensus       297 l~~~---l~d~~~~vr~~a~~~l~~~~~~~~~~----~----~~~~~~~~l~~~~~----------------------~-  342 (521)
                      +..+   ..|+.++||..|+..|-.+....|..    .    +...++|.+..+-.                      + 
T Consensus      1349 L~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~ 1428 (1780)
T PLN03076       1349 LAGLSELSFDPRPEIRKSALQVLFDTLRNHGHLFSLPLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQ 1428 (1780)
T ss_pred             HHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhh
Confidence            6544   67999999999999998888776632    2    22345666544321                      0 


Q ss_pred             CChHHHHHHHHHhHHHHhhhCh-----hhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCH
Q 009975          343 RHWRVRLAIIEYIPLLASQLGV-----GFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP  403 (521)
Q Consensus       343 ~~~~vr~~~~~~l~~l~~~~~~-----~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~  403 (521)
                      ..| ....+..++..+...+..     ....+.++.++..++..++..+-..+..|+..++...|.
T Consensus      1429 ~~W-l~eT~~~AL~~lvdLft~fFd~L~~~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng~ 1493 (1780)
T PLN03076       1429 DAW-LYETCTLALQLVVDLFVKFYPTVNPLLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGH 1493 (1780)
T ss_pred             hhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhc
Confidence            112 244455555555444332     123455666667777888888888899999999877764

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]

Probab=98.30  E-value=0.0049  Score=62.10  Aligned_cols=150  Identities=13%  Similarity=0.125  Sum_probs=122.3

Q ss_pred             hhHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChhhh---HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhC
Q 009975          326 DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF---DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFG  402 (521)
Q Consensus       326 ~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~---~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~  402 (521)
                      +.+...+.|.+.+......-..|...+..++.+..+++.+..   .+.++|++++.+.=++..||..+..++..+....+
T Consensus       862 QRfF~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~  941 (1030)
T KOG1967|consen  862 QRFFCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESE  941 (1030)
T ss_pred             HHHHHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhcc
Confidence            344578899998887766667888889999999888887643   46789999999999999999999999988876554


Q ss_pred             H--HHHHhhhHHHHHhhhcCcc---hHHHHHHHHHHHHhhcccChHH---HhhcHHHHHHhhcCCCCchHHHHHHHHHHH
Q 009975          403 P--EWAMQHITPQVLEMINNPH---YLYRMTILRAISLLAPVMGSEI---TCSRLLPVVINASKDRVPNIKFNVAKVLQS  474 (521)
Q Consensus       403 ~--~~~~~~l~~~l~~~l~~~~---~~~r~~a~~~l~~l~~~~~~~~---~~~~il~~l~~~l~d~~~~VR~~a~~~l~~  474 (521)
                      .  ......++|.+..+-.|.+   -.+|..|+.+++.+....+...   |.+.++..+.+.|+|+...||..|.++=+.
T Consensus       942 tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~ 1021 (1030)
T KOG1967|consen  942 TLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQN 1021 (1030)
T ss_pred             ccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhhh
Confidence            2  2345779999998877766   4699999999999998666554   567899999999999999999999887544


Q ss_pred             H
Q 009975          475 L  475 (521)
Q Consensus       475 ~  475 (521)
                      .
T Consensus      1022 W 1022 (1030)
T KOG1967|consen 1022 W 1022 (1030)
T ss_pred             h
Confidence            3

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.29  E-value=0.0026  Score=63.35  Aligned_cols=197  Identities=16%  Similarity=0.179  Sum_probs=130.7

Q ss_pred             hhhHHhhhhcCchhHHHHHHHHHHHHHHhhc--ChhH-----HHHhHHHHHHHhhcCC-CCcchhhhhhhhhhhcCCCCh
Q 009975           21 LLPPLETLCTVEETCVRDKAVESLCRIGSQM--RESD-----LVDWYIPLVKRLAAGE-WFTARVSACGLFHIAYPSAPD   92 (521)
Q Consensus        21 l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~--~~~~-----~~~~l~p~i~~~~~~~-~~~~r~~~~~~~~~~~~~~~~   92 (521)
                      +-.+|+.+....|+...-.+   +.++|+.+  +.+.     -.+.++|.+..+..++ ++++...||+.+..++..+|+
T Consensus       169 ~kkLL~gL~~~~Des~Qlea---l~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~  245 (1051)
T KOG0168|consen  169 AKKLLQGLQAESDESQQLEA---LTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPR  245 (1051)
T ss_pred             HHHHHHhccccCChHHHHHH---HHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccc
Confidence            45566677666676555444   44555543  2222     2368889998888754 678888899888888776665


Q ss_pred             H----HHHHHHHHHH-HhcCCCChHHHHHHHHhHHHHHHhhCchhhHH----HHHHHHHHhhcCCChhHHHHHHHHHHHH
Q 009975           93 I----LKTELRSIYT-QLCQDDMPMVRRSAASNLGKFAATVEPAHLKT----DIMSIFEDLTQDDQDSVRLLAVEGCAAL  163 (521)
Q Consensus        93 ~----~~~~l~~~l~-~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~----~l~~~l~~l~~d~~~~vr~~a~~~l~~l  163 (521)
                      .    +..-.+|.++ ++..-.--.|-+.+.++|..+.+..+......    ..+.++.-+    .-.+.+.|+.+-.+.
T Consensus       246 S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~LsylDFF----Si~aQR~AlaiaaN~  321 (1051)
T KOG0168|consen  246 SSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKAILQAGALSAVLSYLDFF----SIHAQRVALAIAANC  321 (1051)
T ss_pred             hhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHHHHhcccHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence            4    2223555444 45544556789999999999988776543322    222222222    224577788888899


Q ss_pred             hhhcChhh--hhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCcc------ccchHHHHHHhcC
Q 009975          164 GKLLEPQD--CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPT------RMDLVPAYVRLLR  224 (521)
Q Consensus       164 ~~~~~~~~--~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~------~~~l~~~l~~~l~  224 (521)
                      ++.+.++.  ..-+.+|++..+++..+.+.-..++-++.++++.+.+...      ..+++.-..+++.
T Consensus       322 Cksi~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLls  390 (1051)
T KOG0168|consen  322 CKSIRSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLS  390 (1051)
T ss_pred             HhcCCCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHh
Confidence            99888764  3455889999999988888888899999999987764432      2456666666654

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=98.28  E-value=0.0062  Score=61.28  Aligned_cols=212  Identities=13%  Similarity=0.072  Sum_probs=135.2

Q ss_pred             CChHHHHHHHHHHHHhhhh--hchhhHhhhHHHHHHH-HhcCCChHHHHHHHHHhHHHHhhhChhhhHHHHHHHHHHHcC
Q 009975          304 EFPDVRLNIISKLDQVNQV--IGIDLLSQSLLPAIVE-LAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQ  380 (521)
Q Consensus       304 ~~~~vr~~a~~~l~~~~~~--~~~~~~~~~~~~~l~~-~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~  380 (521)
                      ..|..-..+..+++.+...  ..+..+ ..++..... +..|..+.+|..++..+...++.---..+.+.++..+.++..
T Consensus       462 e~P~Ll~Ra~~~i~~fs~~~~~~~~~~-~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~vl~~~~p~ild~L~qlas  540 (1005)
T KOG2274|consen  462 ESPFLLLRAFLTISKFSSSTVINPQLL-QHFLNATVNALTMDVPPPVKISAVRAFCGYCKVKVLLSLQPMILDGLLQLAS  540 (1005)
T ss_pred             cCHHHHHHHHHHHHHHHhhhccchhHH-HHHHHHHHHhhccCCCCchhHHHHHHHHhccCceeccccchHHHHHHHHHcc
Confidence            3455555677777766554  222222 222222222 346777788888888777666332223456778888899999


Q ss_pred             CCcHHHHHHHHHHHHHHHHHhCHH--HHHhhhHHHHHhhh--cCcchHHHHHHHHHHHHhhcccC-hHHHhhcHHHHHHh
Q 009975          381 DKVYSIRDAAANNLKRLAEEFGPE--WAMQHITPQVLEMI--NNPHYLYRMTILRAISLLAPVMG-SEITCSRLLPVVIN  455 (521)
Q Consensus       381 d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~l--~~~~~~~r~~a~~~l~~l~~~~~-~~~~~~~il~~l~~  455 (521)
                      +...+|-...+++|..+++.-...  .....+.|.+....  .+.++.+-..+-.++..+.+... -....+.++|.+++
T Consensus       541 ~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m~e~~iPslis  620 (1005)
T KOG2274|consen  541 KSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGPMQERLIPSLIS  620 (1005)
T ss_pred             cccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence            999999999999988887543221  12356677666532  22345666666777777765211 11245788999988


Q ss_pred             hcCCCC----chHHHHHHHHHHHHHhhhch---HHHHhhHHHHHHHh-cCCCCccHHHHHHHHHHHHHH
Q 009975          456 ASKDRV----PNIKFNVAKVLQSLIPIVDQ---SMVEKTIRPCLVEL-TEDPDVDVRFFATQAIQSIDH  516 (521)
Q Consensus       456 ~l~d~~----~~VR~~a~~~l~~~~~~~~~---~~~~~~~~~~l~~l-~~D~~~~vr~~a~~al~~l~~  516 (521)
                      .+.-+.    +..-..++..|..+....++   +-+..+.+|.+.++ +...|..+-.++.+|+..+..
T Consensus       621 il~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is  689 (1005)
T KOG2274|consen  621 VLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALIS  689 (1005)
T ss_pred             HHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHh
Confidence            877665    55566777888877776543   34457888988884 555677778888888887653

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.25  E-value=0.0002  Score=71.07  Aligned_cols=178  Identities=20%  Similarity=0.191  Sum_probs=130.6

Q ss_pred             HHhccCCcHHHHHHHHHHHHccccccCh--HHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchhhHhhhHHHHH
Q 009975          259 KELSSDSSQHVRSALASVIMGMAPLLGK--DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAI  336 (521)
Q Consensus       259 ~~~~~d~~~~vr~~~~~~l~~i~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l  336 (521)
                      ...+.|+...+|..++..+..+++...+  -...+.++.++...++|.++.|-.+|++.+..++....     +.++|.+
T Consensus       733 i~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~-----e~il~dL  807 (982)
T KOG4653|consen  733 ISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYP-----EDILPDL  807 (982)
T ss_pred             HHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcc-----hhhHHHH
Confidence            3345677778888888888887763322  23356789999999999999999999998888887644     6677777


Q ss_pred             HH-HhcC---CChHHHHHHHHHhHHHHhhhChh--hhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhC---HHHHH
Q 009975          337 VE-LAED---RHWRVRLAIIEYIPLLASQLGVG--FFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFG---PEWAM  407 (521)
Q Consensus       337 ~~-~~~~---~~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~---~~~~~  407 (521)
                      .+ +.+.   .....|..+.+++..++...|+=  .+.+.+...++....|++..-|.+++.++|.++....   .+++.
T Consensus       808 ~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~  887 (982)
T KOG4653|consen  808 SEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFFH  887 (982)
T ss_pred             HHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHHH
Confidence            66 3222   22455666678888888888873  3445677888888899999999999999999987653   44433


Q ss_pred             hhhHHHHHhh-hcCcchHHHHHHHHHHHHhhcccCh
Q 009975          408 QHITPQVLEM-INNPHYLYRMTILRAISLLAPVMGS  442 (521)
Q Consensus       408 ~~l~~~l~~~-l~~~~~~~r~~a~~~l~~l~~~~~~  442 (521)
                       +++..+... -.|....+|.+|+..+..+....|.
T Consensus       888 -ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~  922 (982)
T KOG4653|consen  888 -EVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGE  922 (982)
T ss_pred             -HHHHHHHHHHccCCchhhHHHHHHHHHHHHhccch
Confidence             344444443 3567788999999999999887664

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.22  E-value=0.00041  Score=68.91  Aligned_cols=221  Identities=13%  Similarity=0.125  Sum_probs=155.2

Q ss_pred             HHHHHHhhcCCChHHHHHHHHHHHHhhhhhchh--hHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChhhhHHHH
Q 009975          294 LPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID--LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKL  371 (521)
Q Consensus       294 ~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l  371 (521)
                      +......+.|+...+|..++..+..+++.-.+.  ...+.++....+.++|.+.-|--.++..+..+++..++     .+
T Consensus       729 ~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e-----~i  803 (982)
T KOG4653|consen  729 LQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPE-----DI  803 (982)
T ss_pred             HHHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcch-----hh
Confidence            444556678888999999999999988733222  12367888899999999998888888888788876444     46


Q ss_pred             HHHHHH-HcC--C-CcHHHHHHHHHHHHHHHHHhCHHH--HHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccC---h
Q 009975          372 GALCMQ-WLQ--D-KVYSIRDAAANNLKRLAEEFGPEW--AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMG---S  442 (521)
Q Consensus       372 ~~~l~~-~l~--d-~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~---~  442 (521)
                      +|.+.. +.+  + +..+.|...-+++..++...|+-.  +...++..++....+|+-..|..++..+|.++....   .
T Consensus       804 l~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vs  883 (982)
T KOG4653|consen  804 LPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVS  883 (982)
T ss_pred             HHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhh
Confidence            666654 322  2 224555556688888888887643  345678888888889999999999999999987432   4


Q ss_pred             HHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchHHHH---hhHHHHHH----HhcCCCCccHHHHHHHHHHHHH
Q 009975          443 EITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVE---KTIRPCLV----ELTEDPDVDVRFFATQAIQSID  515 (521)
Q Consensus       443 ~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~~---~~~~~~l~----~l~~D~~~~vr~~a~~al~~l~  515 (521)
                      +++.+-+-..+.-.-.|+...||.+|+..+..+....|.+...   ..+.....    ..-.+++..+|..|..++..+.
T Consensus       884 d~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei~  963 (982)
T KOG4653|consen  884 DFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEIQ  963 (982)
T ss_pred             HHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHH
Confidence            4444444444444566889999999999999998877743221   11112111    2345677789999999999988


Q ss_pred             Hhhc
Q 009975          516 HVMM  519 (521)
Q Consensus       516 ~~~~  519 (521)
                      ..+.
T Consensus       964 a~l~  967 (982)
T KOG4653|consen  964 AALE  967 (982)
T ss_pred             HHHH
Confidence            7664

>KOG2956 consensus CLIP-associating protein [General function prediction only]

Probab=98.21  E-value=0.00037  Score=64.52  Aligned_cols=181  Identities=13%  Similarity=0.138  Sum_probs=125.4

Q ss_pred             hcCCChHHHHHHHHHHHHhhhhhchh---hHhhhHHHHHHHHhcC-CChHHHHHHHHHhHHHHhhhChhhhHH--HHHHH
Q 009975          301 LKDEFPDVRLNIISKLDQVNQVIGID---LLSQSLLPAIVELAED-RHWRVRLAIIEYIPLLASQLGVGFFDD--KLGAL  374 (521)
Q Consensus       301 l~d~~~~vr~~a~~~l~~~~~~~~~~---~~~~~~~~~l~~~~~~-~~~~vr~~~~~~l~~l~~~~~~~~~~~--~l~~~  374 (521)
                      -.++..+-|..|+..+..+...-+..   .....++-.+.+.+.| .+...|..++..|..+++.-+...+..  ..+--
T Consensus       296 ~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K  375 (516)
T KOG2956|consen  296 SGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICK  375 (516)
T ss_pred             cCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHH
Confidence            33445677888888777765432221   1235667777777777 888999999999999998876654432  22333


Q ss_pred             HHHHcCCCcHHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChHH---HhhcHHH
Q 009975          375 CMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI---TCSRLLP  451 (521)
Q Consensus       375 l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~---~~~~il~  451 (521)
                      ++..-+|.++.|-..|.+....+....-+..-...+.|.+.    ..++..-..++..+.++++.+..+.   ..+.+.|
T Consensus       376 ~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~I~~i~~~Il----t~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP  451 (516)
T KOG2956|consen  376 VLEAAKDSQDEVMRVAEEDCLTTLASHLPLQCIVNISPLIL----TADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAP  451 (516)
T ss_pred             HHHHHhCCchhHHHHHHHHHHHHHHhhCchhHHHHHhhHHh----cCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhh
Confidence            45666788877766666665555544432222233344333    3556666778889999998888765   3578999


Q ss_pred             HHHhhcCCCCchHHHHHHHHHHHHHhhhchHHHH
Q 009975          452 VVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVE  485 (521)
Q Consensus       452 ~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~~  485 (521)
                      .+++..+.....||..++.||-.+...+|.+.+.
T Consensus       452 ~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~me  485 (516)
T KOG2956|consen  452 CVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEME  485 (516)
T ss_pred             HHHHHhcCchHHhhhhHHHhHHHHHHHHhHHhhh
Confidence            9999999999999999999999999998865443

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=98.16  E-value=0.0026  Score=58.32  Aligned_cols=204  Identities=15%  Similarity=0.134  Sum_probs=136.1

Q ss_pred             HHHHhhcCCChHHHHHHHHHHHHhhhh-hchhhH---hhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhC----hhhh
Q 009975          296 IFLSLLKDEFPDVRLNIISKLDQVNQV-IGIDLL---SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG----VGFF  367 (521)
Q Consensus       296 ~l~~~l~d~~~~vr~~a~~~l~~~~~~-~~~~~~---~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~----~~~~  367 (521)
                      -.+..+.+.....|..++..+..+... .-++.+   ...+++.+...++.....-+..++.+++.++-.+|    .+.+
T Consensus        47 ~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei  126 (309)
T PF05004_consen   47 EAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEI  126 (309)
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHH
Confidence            334445666688888888888776532 222222   24567777776666655666777788888887766    2345


Q ss_pred             HHHHHHHHHHHcCCCc--HHHHHHHHHHHHHHHHHhCHHH-HHhhhHHHHH---h--hhc----------CcchHHHHHH
Q 009975          368 DDKLGALCMQWLQDKV--YSIRDAAANNLKRLAEEFGPEW-AMQHITPQVL---E--MIN----------NPHYLYRMTI  429 (521)
Q Consensus       368 ~~~l~~~l~~~l~d~~--~~vr~~a~~~l~~l~~~~~~~~-~~~~l~~~l~---~--~l~----------~~~~~~r~~a  429 (521)
                      .+.+.|.+...+.|..  ..+|.+++.+|+.+.-..+.+. -....+..+.   .  ..+          .++..+..+|
T Consensus       127 ~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aA  206 (309)
T PF05004_consen  127 FEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAA  206 (309)
T ss_pred             HHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHH
Confidence            5678888888888854  4678888888888765544331 1221222222   1  111          1236789999


Q ss_pred             HHHHHHhhcccChHH---HhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhch---H---HHHhhHHHHHHHhcCCC
Q 009975          430 LRAISLLAPVMGSEI---TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ---S---MVEKTIRPCLVELTEDP  499 (521)
Q Consensus       430 ~~~l~~l~~~~~~~~---~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~---~---~~~~~~~~~l~~l~~D~  499 (521)
                      +.+.+-+...++...   ..+..+|.+..+|..++..||.+|.++|..+.+....   +   ...+.+...+..|.+|.
T Consensus       207 L~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~~~~~~~~~~~~~~l~~~l~~La~dS  285 (309)
T PF05004_consen  207 LSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELARDHEEDFLYEDMEELLEQLRELATDS  285 (309)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhcccccccccCHHHHHHHHHHHHHhc
Confidence            999999988777633   3456789999999999999999999999999876432   1   12366777777777765

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>KOG1949 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.10  E-value=0.0064  Score=59.42  Aligned_cols=182  Identities=19%  Similarity=0.162  Sum_probs=124.9

Q ss_pred             HHHHHhhcCCChhHHHHHHHHHHHHhhhc--Ch---hhhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCccc-
Q 009975          139 SIFEDLTQDDQDSVRLLAVEGCAALGKLL--EP---QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR-  212 (521)
Q Consensus       139 ~~l~~l~~d~~~~vr~~a~~~l~~l~~~~--~~---~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~-  212 (521)
                      .++.+.+.-+...+-...-+.++.+...-  .+   +......-|++...++-++..||..|+..+-.+....+++... 
T Consensus       133 ~~~~haiha~rsp~~sk~r~Vl~~F~hqkk~~qgVeeml~rL~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e  212 (1005)
T KOG1949|consen  133 DFMFHAIHAPRSPVHSKVREVLSYFHHQKKVRQGVEEMLYRLYKPILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAE  212 (1005)
T ss_pred             HHHHHHhcCCCChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHH
Confidence            34444444444344444445566655432  11   1222335577888889999999999999988776665655432 


Q ss_pred             ------cchHHHHHHhcCCChHHHHHHHHHhHHH----HHhhhCHHHHHHhhhHHHHHhccCCcHHHHHHHHHHHHcccc
Q 009975          213 ------MDLVPAYVRLLRDNEAEVRIAAAGKVTK----FCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAP  282 (521)
Q Consensus       213 ------~~l~~~l~~~l~d~~~~vr~~a~~~l~~----l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~  282 (521)
                            +.=...+..+++|+-+.||..|...+..    +.+.+++..+.+-+-..+-.+..|....||-+..+++..+..
T Consensus       213 ~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~  292 (1005)
T KOG1949|consen  213 EMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILD  292 (1005)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHc
Confidence                  1233456678999999999988776554    444556665444333444556678888999999999998876


Q ss_pred             ccChHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhh
Q 009975          283 LLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVN  320 (521)
Q Consensus       283 ~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~  320 (521)
                      .-......+.++|.+-..+.|....||-++..-+..+-
T Consensus       293 np~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik  330 (1005)
T KOG1949|consen  293 NPLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIK  330 (1005)
T ss_pred             CccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHH
Confidence            65556668899999999999999999999888776653

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=98.08  E-value=7.1e-06  Score=53.65  Aligned_cols=52  Identities=21%  Similarity=0.134  Sum_probs=28.1

Q ss_pred             hHHHHHHHHHHHHhhcccCh--HHHhhcHHHHHHhhcCCCCchHHHHHHHHHHH
Q 009975          423 YLYRMTILRAISLLAPVMGS--EITCSRLLPVVINASKDRVPNIKFNVAKVLQS  474 (521)
Q Consensus       423 ~~~r~~a~~~l~~l~~~~~~--~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~  474 (521)
                      |++|..++.+|+.++...+.  ..+.+.++|.+..+++|+++.||.+|+.+|+.
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~   54 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGN   54 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence            45566666666655433222  12345555666666666666666666666554

...

>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.07  E-value=0.0015  Score=69.76  Aligned_cols=325  Identities=14%  Similarity=0.109  Sum_probs=175.2

Q ss_pred             hhhcCchhHHHHHHHHHHHHHHhhcChh---------HHHHhHHHHHHHhhc--CCCCcchhhhhhhhh-----hhcC-C
Q 009975           27 TLCTVEETCVRDKAVESLCRIGSQMRES---------DLVDWYIPLVKRLAA--GEWFTARVSACGLFH-----IAYP-S   89 (521)
Q Consensus        27 ~l~~~~~~~vR~~a~~~l~~i~~~~~~~---------~~~~~l~p~i~~~~~--~~~~~~r~~~~~~~~-----~~~~-~   89 (521)
                      .+++++|..||.-..-++.+|...+.|+         ++...++..+..+.+  ++.+..+...+.-+.     .++. .
T Consensus        57 ~~L~h~d~dvrllvacCvseilRi~aPeaPy~~~~lkdIf~~~~~q~~gL~d~~sp~f~r~~~lletl~~~k~~l~~~l~  136 (1266)
T KOG1525|consen   57 FLLKHKDKDVRLLVACCVSEILRIYAPEAPYTDEQLKDIFQLILSQFSGLGDVESPYFKRYFYLLETLAKVKFCLLMLLE  136 (1266)
T ss_pred             HHhcCCCcChhHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHhHHHheeecc
Confidence            3678999999998888999999887653         223333333333333  223323322221111     1111 1


Q ss_pred             CChHHHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHH-Hhhc---CCChhHHHHHHHHHHHHhh
Q 009975           90 APDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFE-DLTQ---DDQDSVRLLAVEGCAALGK  165 (521)
Q Consensus        90 ~~~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~-~l~~---d~~~~vr~~a~~~l~~l~~  165 (521)
                      ..++...+++.++..+..++.+..-......+..+....  +....+++.++. ++..   ++...-+..|-.++...+.
T Consensus       137 d~~e~~~~~f~~f~d~~~~~~~~~v~~~~~i~~~li~e~--d~v~~e~L~~ll~~lv~~~~~~~~~a~~la~~li~~~a~  214 (1266)
T KOG1525|consen  137 DCQELVHELFRTFFDLARKGHPKKVFNMLDIAIMLITEE--DTVQSELLDVLLENLVKPGRDTIKEADKLASDLIERCAD  214 (1266)
T ss_pred             chHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhh--ccchHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHhhh
Confidence            223367777888888775554433333333333333222  234444444443 3333   3333445555555555555


Q ss_pred             hcChhhhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhh
Q 009975          166 LLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRIL  245 (521)
Q Consensus       166 ~~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~  245 (521)
                      ++.+. ..+++...+..... .-..++....+.+-++-...++.  ...++|.+..-+..++..+|..|...++.+....
T Consensus       215 ~~~~~-i~~f~~~~~~~~~s-~~~~~~~~~he~i~~L~~~~p~l--l~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~  290 (1266)
T KOG1525|consen  215 NLEDT-IANFLNSCLTEYKS-RQSSLKIKYHELILELWRIAPQL--LLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDK  290 (1266)
T ss_pred             hhchh-HHHHHHHHHhhccc-cccchhhHHHHHHHHHHHhhHHH--HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcc
Confidence            44322 33334333333221 11223333444444443322211  2357888888788888899999999999987754


Q ss_pred             CHHHH--HHhhhHHHHHhccCCcHHHHHHHHHHHHccccccChHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHH--hhh
Q 009975          246 NPELA--IQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQ--VNQ  321 (521)
Q Consensus       246 ~~~~~--~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~--~~~  321 (521)
                      +..-.  .+.++..+...+.|.+..||..+++....+.-..+.-  .+.....+.....|.++.+|......+..  +..
T Consensus       291 ~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~--~~~~~~~~~l~~~~~D~~~rir~~v~i~~~~v~~  368 (1266)
T KOG1525|consen  291 DSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPSI--AKASTILLALRERDLDEDVRVRTQVVIVACDVMK  368 (1266)
T ss_pred             hhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCchh--hhHHHHHHHHHhhcCChhhhheeeEEEEEeehhH
Confidence            33222  3456777788889999999999998887765432221  12222222223345555555443222221  111


Q ss_pred             hhchhhHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhh
Q 009975          322 VIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQ  361 (521)
Q Consensus       322 ~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~  361 (521)
                       +..... ..++....+.+.|+.|.||..++.-+..+.+.
T Consensus       369 -~~l~~~-~~ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~  406 (1266)
T KOG1525|consen  369 -FKLVYI-PLLLKLVAERLRDKKIKVRKQAMNGLAQLYKN  406 (1266)
T ss_pred             -hhhhhh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence             111111 22566667778999999999999999988874

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=98.05  E-value=0.013  Score=56.11  Aligned_cols=221  Identities=15%  Similarity=0.157  Sum_probs=142.7

Q ss_pred             HHHHHHhhcChhHHHHhHHHHHHHhhc---CCCCcchhhhhhhhhhhc----CCCCh--HHHHHHHHHHHHhcCCCChHH
Q 009975           43 SLCRIGSQMRESDLVDWYIPLVKRLAA---GEWFTARVSACGLFHIAY----PSAPD--ILKTELRSIYTQLCQDDMPMV  113 (521)
Q Consensus        43 ~l~~i~~~~~~~~~~~~l~p~i~~~~~---~~~~~~r~~~~~~~~~~~----~~~~~--~~~~~l~~~l~~l~~~~~~~v  113 (521)
                      .+..+.+....+.+...++..+.....   ++...-|.  ..++..++    +..|+  +....++..+...+..++..|
T Consensus        30 ~~a~l~~~~t~~~f~~~flr~vn~IL~~Kk~~si~dRi--l~fl~~f~~Y~~~~dpeg~~~V~~~~~h~lRg~eskdk~V  107 (885)
T COG5218          30 SLAELMEMLTAHEFSEEFLRVVNTILACKKNPSIPDRI--LSFLKRFFEYDMPDDPEGEELVAGTFYHLLRGTESKDKKV  107 (885)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHhhccccCCCcHHHH--HHHHHHHHHhcCCCChhhhHHHHHHHHHHHhcccCcchhH
Confidence            444555555555566666655544333   33333332  23333333    23333  245566666777778889999


Q ss_pred             HHHHHHhHHHHHHhhCc--hhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcChhhhhhhhHHHHHHhc-CCCChH
Q 009975          114 RRSAASNLGKFAATVEP--AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFS-QDKSWR  190 (521)
Q Consensus       114 r~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~-~d~~~~  190 (521)
                      |...++.|..++..+++  +...+.++.-+..-+-|-.+.||..|+.+|..+-+.-..+  ...+..++.... +|++.+
T Consensus       108 R~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~ne--en~~~n~l~~~vqnDPS~E  185 (885)
T COG5218         108 RKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNE--ENRIVNLLKDIVQNDPSDE  185 (885)
T ss_pred             HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCCh--HHHHHHHHHHHHhcCcHHH
Confidence            99999999999988886  6677778887888888999999999999999887554332  345556666544 589999


Q ss_pred             HHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHH-HHHhHHHHHhhhCHHHHHHhhhHHHHHhccCCcHHH
Q 009975          191 VRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIA-AAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHV  269 (521)
Q Consensus       191 vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~-a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~v  269 (521)
                      ||+.+.-.+..          .+.-.|.+.+-..|-+...|+. -..+|..++....-. +.+.+. .+...+.|.+..|
T Consensus       186 VRr~allni~v----------dnsT~p~IlERarDv~~anRr~vY~r~Lp~iGd~~~ls-i~kri~-l~ewgl~dRe~sv  253 (885)
T COG5218         186 VRRLALLNISV----------DNSTYPCILERARDVSGANRRMVYERCLPRIGDLKSLS-IDKRIL-LMEWGLLDREFSV  253 (885)
T ss_pred             HHHHHHHHeee----------CCCcchhHHHHhhhhhHHHHHHHHHHHhhhhcchhhcc-ccceeh-hhhhcchhhhhhH
Confidence            99988765531          2445688888888877655554 355677766543211 112222 4555667788888


Q ss_pred             HHHHHHHHHc
Q 009975          270 RSALASVIMG  279 (521)
Q Consensus       270 r~~~~~~l~~  279 (521)
                      |.+++.++..
T Consensus       254 ~~a~~d~ia~  263 (885)
T COG5218         254 KGALVDAIAS  263 (885)
T ss_pred             HHHHHHHHHH
Confidence            8887776653

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=98.05  E-value=0.0017  Score=59.52  Aligned_cols=181  Identities=21%  Similarity=0.202  Sum_probs=126.5

Q ss_pred             HhcCCChHHHHHHHHHhHHHHhh-hChhhh---HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhC----HHHHHhhh
Q 009975          339 LAEDRHWRVRLAIIEYIPLLASQ-LGVGFF---DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFG----PEWAMQHI  410 (521)
Q Consensus       339 ~~~~~~~~vr~~~~~~l~~l~~~-~~~~~~---~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~----~~~~~~~l  410 (521)
                      .+.++....|..++..+..+... +-.+.+   ...+++.+.+.++-....-+..|+.+++.++-.+|    .+.+.+.+
T Consensus        51 ~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~~~  130 (309)
T PF05004_consen   51 LLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIFEEL  130 (309)
T ss_pred             HHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHHHHH
Confidence            34566788999988887766533 333333   24477888888887766667788889999888866    23455778


Q ss_pred             HHHHHhhhcCcc--hHHHHHHHHHHHHhhcccChHH-Hhh---cHHHHHHhh--c-CC---------CCchHHHHHHHHH
Q 009975          411 TPQVLEMINNPH--YLYRMTILRAISLLAPVMGSEI-TCS---RLLPVVINA--S-KD---------RVPNIKFNVAKVL  472 (521)
Q Consensus       411 ~~~l~~~l~~~~--~~~r~~a~~~l~~l~~~~~~~~-~~~---~il~~l~~~--l-~d---------~~~~VR~~a~~~l  472 (521)
                      .|.|...+.|..  ...|..++.+++.+.-..+.+. -..   ..+..++..  . .|         +++.|..+|+.++
T Consensus       131 ~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW  210 (309)
T PF05004_consen  131 KPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAW  210 (309)
T ss_pred             HHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHH
Confidence            889988888754  5678888888887665333221 122   344433332  1 12         2357999999999


Q ss_pred             HHHHhhhchHHH---HhhHHHHHHHhcCCCCccHHHHHHHHHHHHHHhhc
Q 009975          473 QSLIPIVDQSMV---EKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMM  519 (521)
Q Consensus       473 ~~~~~~~~~~~~---~~~~~~~l~~l~~D~~~~vr~~a~~al~~l~~~~~  519 (521)
                      +.+...++...+   ....+|.|..++..++.+||..|..++.-|-+...
T Consensus       211 ~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~  260 (309)
T PF05004_consen  211 ALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELAR  260 (309)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh
Confidence            999988776433   35578888888899999999999999998876543

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=98.02  E-value=2.4e-05  Score=51.14  Aligned_cols=53  Identities=26%  Similarity=0.308  Sum_probs=40.0

Q ss_pred             HHHHHHHHHHHHccccccCh--HHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHh
Q 009975          267 QHVRSALASVIMGMAPLLGK--DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQV  319 (521)
Q Consensus       267 ~~vr~~~~~~l~~i~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~  319 (521)
                      |.||..++.+++.++...+.  ......++|.+..+++|+++.||..|+.+|+.+
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence            67888888888887655544  234567888888888888888888888888753

...

>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]

Probab=97.97  E-value=0.028  Score=57.13  Aligned_cols=145  Identities=16%  Similarity=0.082  Sum_probs=101.3

Q ss_pred             HHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHh-cCCChHHHHHHHHHhHHHHhhhChhhhHHHHHHHHHHHcCCCcHH
Q 009975          307 DVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELA-EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYS  385 (521)
Q Consensus       307 ~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~  385 (521)
                      -+|..+.-++++++-  ..+.+.+..+|.+.+-+ ......+|..++-+++.++.....  ..+.-+|.+-..|.|+.+-
T Consensus       946 ~vra~~vvTlakmcL--ah~~LaKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YTa--m~d~YiP~I~~~L~Dp~~i 1021 (1529)
T KOG0413|consen  946 KVRAVGVVTLAKMCL--AHDRLAKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYTA--MTDRYIPMIAASLCDPSVI 1021 (1529)
T ss_pred             HHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHHH--HHHHhhHHHHHHhcCchHH
Confidence            456667777777663  33445567888886644 345567788777777777655322  2456778888999999999


Q ss_pred             HHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChHHHhhcHHHHHHhh
Q 009975          386 IRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINA  456 (521)
Q Consensus       386 vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~il~~l~~~  456 (521)
                      ||+.++-.|..+..- |.-.+...++=.++..+-|.+..+|.-+=.+++.+...-.+..|...++..++.+
T Consensus      1022 VRrqt~ilL~rLLq~-~~vKw~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~~~~P~~f~~~FVe~i~~l 1091 (1529)
T KOG0413|consen 1022 VRRQTIILLARLLQF-GIVKWNGELFIRFMLALLDANEDIRNDAKFYISEVLQSEEPNFFPLNFVEYIIAL 1091 (1529)
T ss_pred             HHHHHHHHHHHHHhh-hhhhcchhhHHHHHHHHcccCHHHHHHHHHHHHHHHhhcCccchHHHHHHHHHHH
Confidence            999999999888742 2222334455556666778899999999999999988666666666666666543

>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II

Probab=97.97  E-value=0.0045  Score=55.17  Aligned_cols=226  Identities=14%  Similarity=0.137  Sum_probs=126.2

Q ss_pred             ccCCcHHHHHHHHHHHHccccccChHHH----HHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhh--hchhhHhhhHHHH
Q 009975          262 SSDSSQHVRSALASVIMGMAPLLGKDAT----IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV--IGIDLLSQSLLPA  335 (521)
Q Consensus       262 ~~d~~~~vr~~~~~~l~~i~~~~~~~~~----~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~--~~~~~~~~~~~~~  335 (521)
                      +.+.++.+|..+...++.+...++++..    .+.++..+...+.|.  ..-..++.++..+.+.  ++.+.. ..++..
T Consensus         8 Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~--~~~~~~l~gl~~L~~~~~~~~~~~-~~i~~~   84 (262)
T PF14500_consen    8 LTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDH--ACVQPALKGLLALVKMKNFSPESA-VKILRS   84 (262)
T ss_pred             hCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccH--hhHHHHHHHHHHHHhCcCCChhhH-HHHHHH
Confidence            3444444555554444444444332211    233445555555332  2223335555444421  222221 233333


Q ss_pred             HHHHh--cCCChHHHHHHHHHhHHHHhhhChhh--hHHHHHHHHHHHc-CCCcHHHHHHHHHHHHHHHHHhCHHHHHhhh
Q 009975          336 IVELA--EDRHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWL-QDKVYSIRDAAANNLKRLAEEFGPEWAMQHI  410 (521)
Q Consensus       336 l~~~~--~~~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l  410 (521)
                      +.+-.  +......|..+.+.+..+........  ..+.++..+.+.+ .+.+|.--.-+++.+..+...+......+.+
T Consensus        85 l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~~~~~e~l  164 (262)
T PF14500_consen   85 LFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDISEFAEDL  164 (262)
T ss_pred             HHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccchhHHHH
Confidence            33221  22345678888888877776643321  2233444444444 4577777777888888887777654445555


Q ss_pred             HHHHHhhh--------cCcchHHHHHHHHHHHHhhcccChHHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchH
Q 009975          411 TPQVLEMI--------NNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS  482 (521)
Q Consensus       411 ~~~l~~~l--------~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~  482 (521)
                      +..+.-+.        +|+..-.|+.....+.....  +...|.+..+|.++.-|..+.+.+|.-++++|...+..+|.+
T Consensus       165 Fd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~--s~~~fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~y~~~  242 (262)
T PF14500_consen  165 FDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLS--STPLFAPFAFPLLLEKLDSTSPSVKLDSLQTLKACIENYGAD  242 (262)
T ss_pred             HHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhc--CcHhhHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHCCHH
Confidence            55554322        23322234444444444332  345677899999999999999999999999999999999987


Q ss_pred             HHHhhHHHHH
Q 009975          483 MVEKTIRPCL  492 (521)
Q Consensus       483 ~~~~~~~~~l  492 (521)
                      .+.++..+.-
T Consensus       243 ~~~~~~~~iw  252 (262)
T PF14500_consen  243 SLSPHWSTIW  252 (262)
T ss_pred             HHHHHHHHHH
Confidence            6665554443

>KOG1822 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.94  E-value=0.055  Score=59.33  Aligned_cols=279  Identities=15%  Similarity=0.149  Sum_probs=160.0

Q ss_pred             hhhhhhhhhhcCCCChHHHHHHHHHHHHhcCCC----ChHHHHHHHH--hHHHHHHhh---------CchhhHHHHHHHH
Q 009975           77 VSACGLFHIAYPSAPDILKTELRSIYTQLCQDD----MPMVRRSAAS--NLGKFAATV---------EPAHLKTDIMSIF  141 (521)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~----~~~vr~~a~~--~l~~l~~~~---------~~~~~~~~l~~~l  141 (521)
                      -.+..+++.++++.+...+-.++..+.......    -..|+..+..  ++-...+.+         +++.+...-..++
T Consensus       802 dta~~lfg~vfp~v~~k~~~~ile~~~esi~~sk~~r~qsV~~~a~t~~al~s~lk~l~e~~~~~~lg~e~v~~~~~~l~  881 (2067)
T KOG1822|consen  802 DTAVSLFGSVFPHVNNKIRLSILEHFPESIKQSKSARQQSVQVNAVTWQALLSALKYLAEFKGATSLGPEEVRSSALTLI  881 (2067)
T ss_pred             HHHHHHHHHhccCccHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHHHhcccccccCHHHHHHHHHHHH
Confidence            346678888888888776666666666554332    2334444433  333333222         2233444445556


Q ss_pred             HHhhcCCChhHHHHHHHHHHHHhhhcChhhhhhhhHHHHHH-hcCCCChHHHHHHHHHHHHHHHHhCCCccccchH---H
Q 009975          142 EDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVN-FSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLV---P  217 (521)
Q Consensus       142 ~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~-~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~---~  217 (521)
                      ...+..+++..|..+.++++.++...++..+...+.+.+.. +.+-.++..|..-.-++|.+-+..|.-...+++.   .
T Consensus       882 ~~sl~~~~p~~rc~~~ea~arLaq~v~~~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~qhl~t~v~  961 (2067)
T KOG1822|consen  882 VNSLINPNPKLRCAAAEALARLAQVVGSAPFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQHLNTSVS  961 (2067)
T ss_pred             hhhhccCChHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCchhcccHHH
Confidence            66667788999999999999999998877665565555444 4445667777777778898888877554444444   4


Q ss_pred             HHHHhcCCChH-HHHHHHHHhHHHHHhhhCHHH--HHHhhhHHHHHh-ccCCc--HHHHHHHHHHHH------ccccccC
Q 009975          218 AYVRLLRDNEA-EVRIAAAGKVTKFCRILNPEL--AIQHILPCVKEL-SSDSS--QHVRSALASVIM------GMAPLLG  285 (521)
Q Consensus       218 ~l~~~l~d~~~-~vr~~a~~~l~~l~~~~~~~~--~~~~~~~~l~~~-~~d~~--~~vr~~~~~~l~------~i~~~~~  285 (521)
                      ++..+.+|+.. .|+..++.++.-+....++..  +....+..+..+ +.++.  ..++...-+++.      .+....|
T Consensus       962 illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~~~~ev~q~~~R~~~~~~~~~alittlg 1041 (2067)
T KOG1822|consen  962 ILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPTSHVEVHQCYNRCFNGDDDEDALITTLG 1041 (2067)
T ss_pred             HHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCcchhhhhhhhccccccchhHHHHHHhcc
Confidence            77777788764 999999999999888776642  222233333333 33332  223333222222      3333332


Q ss_pred             hHH-----------HHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHhcCCChHHHHHHHHH
Q 009975          286 KDA-----------TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY  354 (521)
Q Consensus       286 ~~~-----------~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~  354 (521)
                      ++.           .....+-...-++..+++.+...+..++..+.-.-....-.+.+++.+..++....-..|.+.+.+
T Consensus      1042 peL~~N~~~d~t~~~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr~~n~~~lV~~L~~~l~s~~~i~r~~~~~c 1121 (2067)
T KOG1822|consen 1042 PELGPNGDKDSTSTLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPRHVNLDSLVLQLCSLLSSSYLILRRASFSC 1121 (2067)
T ss_pred             cccCCCCcccchhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcchhccHHHHHHHHHHHhcchhhhhhhhHHhh
Confidence            211           111122222223334467777777777776654333322235666766666555544444443333


Q ss_pred             h
Q 009975          355 I  355 (521)
Q Consensus       355 l  355 (521)
                      +
T Consensus      1122 l 1122 (2067)
T KOG1822|consen 1122 L 1122 (2067)
T ss_pred             h
Confidence            3

>KOG1851 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.92  E-value=0.037  Score=59.39  Aligned_cols=148  Identities=14%  Similarity=0.177  Sum_probs=95.8

Q ss_pred             hhHHHHHHH-HhcCCChHHHHHHHHHhHHHHh--hhC-hhhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHHH
Q 009975          330 QSLLPAIVE-LAEDRHWRVRLAIIEYIPLLAS--QLG-VGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW  405 (521)
Q Consensus       330 ~~~~~~l~~-~~~~~~~~vr~~~~~~l~~l~~--~~~-~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~  405 (521)
                      ..++..+.. ...+.+|++|.++++.+..+.-  .++ .+.-.+.+...+..++.|.+..||+.|+.++..+...--...
T Consensus      1525 ~e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~Fv~~~~~r~dI~~l~~s~l~D~~i~vre~Aa~~Lsgl~~~s~~~~ 1604 (1710)
T KOG1851|consen 1525 PEFLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNIFVSQELRRDDIRKLLESLLNDDQIEVREEAAKCLSGLLQGSKFQF 1604 (1710)
T ss_pred             HHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHhcccccc
Confidence            556666664 3456789999999998876542  233 333457788899999999999999999999999876432111


Q ss_pred             HHhhhHHHHHhh--hcCcchHHHHHHHHHHHHhhcccChH--HHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhh
Q 009975          406 AMQHITPQVLEM--INNPHYLYRMTILRAISLLAPVMGSE--ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIV  479 (521)
Q Consensus       406 ~~~~l~~~l~~~--l~~~~~~~r~~a~~~l~~l~~~~~~~--~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~  479 (521)
                      .. .........  ..+.+...+.+|+..+|+++-.++-.  .+.++.+..+-...+++ ..++.++-+++..+-...
T Consensus      1605 ~~-~k~d~~~~~~~s~s~~~i~~HgavlgLgA~VlafPy~vP~wip~~L~~Ls~fa~e~-~~i~~tvkktvseFrrth 1680 (1710)
T KOG1851|consen 1605 VS-DKRDTTSNILQSKSKDEIKAHGAVLGLGAIVLAFPYVVPLWIPKPLMNLSSFARES-AAIKQTVKKTVSEFRRTH 1680 (1710)
T ss_pred             ch-HhhhhhhhhhhhcchHHHHhhhhHHHHHHHHHhccccchhhhHHHHHHHHhhcCCc-hHHHHHHHHHHHHHHHHh
Confidence            11 111122222  23345667789999999988644421  13333444444444555 678999999998876543

>KOG1949 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.89  E-value=0.0038  Score=60.87  Aligned_cols=146  Identities=22%  Similarity=0.212  Sum_probs=101.7

Q ss_pred             hhHHHHHhccCCcHHHHHHHHHHHHccccccChHHH-------HHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhh---
Q 009975          254 ILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDAT-------IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI---  323 (521)
Q Consensus       254 ~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~-------~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~---  323 (521)
                      .-|.+-..++-+|..||..|+..+-.+.+..|++..       .+.=...+.+++.|+-+.||..|...+.++...+   
T Consensus       175 ~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~  254 (1005)
T KOG1949|consen  175 YKPILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEM  254 (1005)
T ss_pred             HhHHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHH
Confidence            345556667778888999988888888877776542       2233456778888888999988888888776642   


Q ss_pred             -chhhHhhhHHH-HHHHHhcCCChHHHHHHHHHhHHHHhhhChhhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHH
Q 009975          324 -GIDLLSQSLLP-AIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEE  400 (521)
Q Consensus       324 -~~~~~~~~~~~-~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~  400 (521)
                       ++..+ ..++. .+-++..|....||.+..+.+..++..-......++++|.+-..+.|+...||.++...+..+-..
T Consensus       255 iP~~i~-~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik~v  332 (1005)
T KOG1949|consen  255 IPPTIL-IDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIKAV  332 (1005)
T ss_pred             cCHHHH-HHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHHhh
Confidence             12212 22222 223355667778888888888888776555566677888888888888888888888877766543

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]

Probab=97.87  E-value=0.00028  Score=70.54  Aligned_cols=144  Identities=15%  Similarity=0.102  Sum_probs=98.3

Q ss_pred             HHHHhHHHHHHHhhcCCCCcchhhhhhhhhhhcCCCChH----HHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCc
Q 009975           55 DLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI----LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP  130 (521)
Q Consensus        55 ~~~~~l~p~i~~~~~~~~~~~r~~~~~~~~~~~~~~~~~----~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~  130 (521)
                      ++...+.|.+.+..+......|.--...+.+...+.|..    ..+.++|++.+.++-+|..||..+...+..+....+.
T Consensus       863 RfF~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~t  942 (1030)
T KOG1967|consen  863 RFFCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESET  942 (1030)
T ss_pred             HHHHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccc
Confidence            445677777776666444455555555555555555544    2466788888888888888888888888777665543


Q ss_pred             --hhhHHHHHHHHHHhhcCCC---hhHHHHHHHHHHHHhhhcChh---hhhhhhHHHHHHhcCCCChHHHHHHHHH
Q 009975          131 --AHLKTDIMSIFEDLTQDDQ---DSVRLLAVEGCAALGKLLEPQ---DCVAHILPVIVNFSQDKSWRVRYMVANQ  198 (521)
Q Consensus       131 --~~~~~~l~~~l~~l~~d~~---~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~~~d~~~~vR~~~~~~  198 (521)
                        ......+.|.+..+..|++   -.||..|++++..+.+..+..   .+++.++..+.+.+.|+...||..|+.+
T Consensus       943 L~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen  943 LQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred             cchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHH
Confidence              3455667777777776665   467888888888888876654   2455677777777788887888877765

>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=97.86  E-value=0.0046  Score=58.11  Aligned_cols=126  Identities=19%  Similarity=0.233  Sum_probs=87.9

Q ss_pred             cHHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhc------CcchHHHHHHHHHHHHhhcccC---------------
Q 009975          383 VYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMIN------NPHYLYRMTILRAISLLAPVMG---------------  441 (521)
Q Consensus       383 ~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~------~~~~~~r~~a~~~l~~l~~~~~---------------  441 (521)
                      ...-|.+|...+..+++..+... .+.+...+..+++      ..+|+.+.+|+..++.++....               
T Consensus       224 ~~TrR~AA~dfl~~L~~~~~~~v-~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v  302 (370)
T PF08506_consen  224 SDTRRRAACDFLRSLCKKFEKQV-TSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDV  302 (370)
T ss_dssp             --SHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-H
T ss_pred             cCCcHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccH
Confidence            34578899999999988765432 1222233333332      3579999999999999996431               


Q ss_pred             hHHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchHHHHhhHHHHHHHhcCCCCccHHHHHHHHH
Q 009975          442 SEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAI  511 (521)
Q Consensus       442 ~~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~~~~~~~~l~~l~~D~~~~vr~~a~~al  511 (521)
                      .+++..+++|.+. .-.+..|-+|-.|++.+..+-..++++.. ..++|.+.+.+.+++.-|+..|+.|+
T Consensus       303 ~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~~~l-~~~~~~l~~~L~~~~~vv~tyAA~~i  370 (370)
T PF08506_consen  303 VDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPKEQL-LQIFPLLVNHLQSSSYVVHTYAAIAI  370 (370)
T ss_dssp             HHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-HHHH-HHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred             HHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCHHHH-HHHHHHHHHHhCCCCcchhhhhhhhC
Confidence            2345567777776 34456788999999999999998876655 67899999999999999999999875

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.

>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]

Probab=97.85  E-value=0.014  Score=62.71  Aligned_cols=326  Identities=13%  Similarity=0.063  Sum_probs=161.3

Q ss_pred             hcCCCChHHHHHHHHHHHHHHHHhCCCccc-----cchHHHHHH---hcCCCh-H--HHHHHHHHhHHHHH-----hhhC
Q 009975          183 FSQDKSWRVRYMVANQLYELCEAVGPEPTR-----MDLVPAYVR---LLRDNE-A--EVRIAAAGKVTKFC-----RILN  246 (521)
Q Consensus       183 ~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~-----~~l~~~l~~---~l~d~~-~--~vr~~a~~~l~~l~-----~~~~  246 (521)
                      ++++++..||...+-|+..|.+.+.++...     .+++..+.+   .+.|.. +  .-+..-++.+..+-     ....
T Consensus        58 ~L~h~d~dvrllvacCvseilRi~aPeaPy~~~~lkdIf~~~~~q~~gL~d~~sp~f~r~~~lletl~~~k~~l~~~l~d  137 (1266)
T KOG1525|consen   58 LLKHKDKDVRLLVACCVSEILRIYAPEAPYTDEQLKDIFQLILSQFSGLGDVESPYFKRYFYLLETLAKVKFCLLMLLED  137 (1266)
T ss_pred             HhcCCCcChhHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHhHHHheeeccc
Confidence            567889999999999999999988766533     233333332   234432 1  22223333333322     1112


Q ss_pred             HHHHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccChHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchh
Q 009975          247 PELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID  326 (521)
Q Consensus       247 ~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~  326 (521)
                      .+.+...+...+..+..+..+.--......+..+....  +.....++..++.-+-.+.......|...-..++..++..
T Consensus       138 ~~e~~~~~f~~f~d~~~~~~~~~v~~~~~i~~~li~e~--d~v~~e~L~~ll~~lv~~~~~~~~~a~~la~~li~~~a~~  215 (1266)
T KOG1525|consen  138 CQELVHELFRTFFDLARKGHPKKVFNMLDIAIMLITEE--DTVQSELLDVLLENLVKPGRDTIKEADKLASDLIERCADN  215 (1266)
T ss_pred             hHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhh--ccchHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHhhhh
Confidence            33444455555555554433321122222222222111  2223445555544444444444444444444444433321


Q ss_pred             hHhhhHHHHHHHH-hcCC--ChHHHHHHHHHhHHHHhhhChhhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCH
Q 009975          327 LLSQSLLPAIVEL-AEDR--HWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP  403 (521)
Q Consensus       327 ~~~~~~~~~l~~~-~~~~--~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~  403 (521)
                      . ...+-..+... ..+.  .-.++...-+.+-.+....+.  ....++|.+...|...+..+|..|...+|.+....+.
T Consensus       216 ~-~~~i~~f~~~~~~~~~s~~~~~~~~~he~i~~L~~~~p~--ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~  292 (1266)
T KOG1525|consen  216 L-EDTIANFLNSCLTEYKSRQSSLKIKYHELILELWRIAPQ--LLLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDS  292 (1266)
T ss_pred             h-chhHHHHHHHHHhhccccccchhhHHHHHHHHHHHhhHH--HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchh
Confidence            1 01112222221 1111  111222222222222221111  1234677777778888889999999999988765543


Q ss_pred             HHH--HhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChHHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHh-hhc
Q 009975          404 EWA--MQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIP-IVD  480 (521)
Q Consensus       404 ~~~--~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~-~~~  480 (521)
                      ...  ...++..+...+.|....+|..+++....+...-..  ........+.....|.++.+|.....++..... .+.
T Consensus       293 ~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~--~~~~~~~~~~l~~~~~D~~~rir~~v~i~~~~v~~~~  370 (1266)
T KOG1525|consen  293 QLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPS--IAKASTILLALRERDLDEDVRVRTQVVIVACDVMKFK  370 (1266)
T ss_pred             hhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCch--hhhHHHHHHHHHhhcCChhhhheeeEEEEEeehhHhh
Confidence            332  345667777788899999999999888887753221  111111112222244445555443222211110 001


Q ss_pred             hHHHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 009975          481 QSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDH  516 (521)
Q Consensus       481 ~~~~~~~~~~~l~~l~~D~~~~vr~~a~~al~~l~~  516 (521)
                      -..... ++..+...+.|.-++||..|...+..+=+
T Consensus       371 l~~~~~-ll~~~~eR~rDKk~~VR~~Am~~LaqlYk  405 (1266)
T KOG1525|consen  371 LVYIPL-LLKLVAERLRDKKIKVRKQAMNGLAQLYK  405 (1266)
T ss_pred             hhhhHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence            111112 55666667788888888888888877655

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=97.82  E-value=0.008  Score=55.35  Aligned_cols=160  Identities=13%  Similarity=0.215  Sum_probs=92.7

Q ss_pred             HHHHhcCCCChHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHH--------
Q 009975          179 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELA--------  250 (521)
Q Consensus       179 ~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~--------  250 (521)
                      ++....+++++.+|..+.+++|-++ .+..+.. .+.++.+.+.++.++.+||..|++++..+....|.+.+        
T Consensus        31 lI~P~v~~~~~~vR~~al~cLGl~~-Lld~~~a-~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~  108 (298)
T PF12719_consen   31 LILPAVQSSDPAVRELALKCLGLCC-LLDKELA-KEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESDNDE  108 (298)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHH-HhChHHH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhccCc
Confidence            3445667777778888888877443 3333332 34456666666555777888888877777776654311        


Q ss_pred             ---HHhhhHHHHHhccCCcHHHHHHHHHHHHccc--cccCh-HHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhc
Q 009975          251 ---IQHILPCVKELSSDSSQHVRSALASVIMGMA--PLLGK-DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG  324 (521)
Q Consensus       251 ---~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~--~~~~~-~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~  324 (521)
                         ...+...+.+.+.+.++.+|..+++.+.++.  ..+.. ......++-.+.+--..++...|+.....++.++..-.
T Consensus       109 ~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ffp~y~~s~~  188 (298)
T PF12719_consen  109 SVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISDPPKVLSRLLLLYFNPSTEDNQRLRQCLSVFFPVYASSSP  188 (298)
T ss_pred             cchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHcCCH
Confidence               2345566666677777788888888887753  23333 33344444444444444556666666666655543222


Q ss_pred             --hhhHhhhHHHHHHHHh
Q 009975          325 --IDLLSQSLLPAIVELA  340 (521)
Q Consensus       325 --~~~~~~~~~~~l~~~~  340 (521)
                        .+.+.+..+|.+..+.
T Consensus       189 ~~Q~~l~~~f~~~l~~~~  206 (298)
T PF12719_consen  189 ENQERLAEAFLPTLRTLS  206 (298)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence              1223345556555544

>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II

Probab=97.82  E-value=0.01  Score=52.91  Aligned_cols=222  Identities=12%  Similarity=0.043  Sum_probs=130.4

Q ss_pred             HhhhhcCchhHHHHHHHHHHHHHHhhcChhHHH----HhHHHHHHHhhcCCCCcchhh--hhhhhhhhcCCCChHHHHHH
Q 009975           25 LETLCTVEETCVRDKAVESLCRIGSQMRESDLV----DWYIPLVKRLAAGEWFTARVS--ACGLFHIAYPSAPDILKTEL   98 (521)
Q Consensus        25 l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~----~~l~p~i~~~~~~~~~~~r~~--~~~~~~~~~~~~~~~~~~~l   98 (521)
                      |...+.++|+.+|..|+..|..+.+.++++.+.    +.+..+.....+| +..+..+  ++..+... +..++.....+
T Consensus         4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D-~~~~~~~l~gl~~L~~~-~~~~~~~~~~i   81 (262)
T PF14500_consen    4 LGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDD-HACVQPALKGLLALVKM-KNFSPESAVKI   81 (262)
T ss_pred             hhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhcc-HhhHHHHHHHHHHHHhC-cCCChhhHHHH
Confidence            455667899999999999999999999975443    3444554444433 3333322  22222222 23444434455


Q ss_pred             HHHHHHhc--CCCChHHHHHHHHhHHHHHHhhCch--hhHHHHHHHHHHhhcC-CChhHHHHHHHHHHHHhhhcChhhhh
Q 009975           99 RSIYTQLC--QDDMPMVRRSAASNLGKFAATVEPA--HLKTDIMSIFEDLTQD-DQDSVRLLAVEGCAALGKLLEPQDCV  173 (521)
Q Consensus        99 ~~~l~~l~--~~~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~l~~d-~~~~vr~~a~~~l~~l~~~~~~~~~~  173 (521)
                      +..+.+-.  +.-.+..|..+.+.+..+.......  .....++.-+.+.... .++.--..+.+.+..+...++-+...
T Consensus        82 ~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~~~~~  161 (262)
T PF14500_consen   82 LRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDISEFA  161 (262)
T ss_pred             HHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccchhH
Confidence            55444422  2335678999999998888765432  1233455555555554 46666667778888887776654445


Q ss_pred             hhhHHHHHHhc--------CCCChHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhh
Q 009975          174 AHILPVIVNFS--------QDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRIL  245 (521)
Q Consensus       174 ~~l~~~l~~~~--------~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~  245 (521)
                      ++++..+....        +|+..-.|......+..-..  ......+..+|.+.+-+.++...++.-++.+|.......
T Consensus       162 e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~--s~~~fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~y  239 (262)
T PF14500_consen  162 EDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLS--STPLFAPFAFPLLLEKLDSTSPSVKLDSLQTLKACIENY  239 (262)
T ss_pred             HHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhc--CcHhhHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHC
Confidence            55555544322        23322233333333322111  112233567888888888888888888888888888877


Q ss_pred             CHHHH
Q 009975          246 NPELA  250 (521)
Q Consensus       246 ~~~~~  250 (521)
                      |.+..
T Consensus       240 ~~~~~  244 (262)
T PF14500_consen  240 GADSL  244 (262)
T ss_pred             CHHHH
Confidence            76644

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=97.80  E-value=4.3e-05  Score=42.75  Aligned_cols=29  Identities=38%  Similarity=0.426  Sum_probs=17.6

Q ss_pred             HHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Q 009975          371 LGALCMQWLQDKVYSIRDAAANNLKRLAE  399 (521)
Q Consensus       371 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~  399 (521)
                      ++|.+.++++|++++||.+|+.+++.+++
T Consensus         1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~   29 (31)
T PF02985_consen    1 LLPILLQLLNDPSPEVRQAAAECLGAIAE   29 (31)
T ss_dssp             HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence            35666666666666666666666666654

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []

Probab=97.79  E-value=0.0035  Score=64.65  Aligned_cols=163  Identities=15%  Similarity=0.164  Sum_probs=97.4

Q ss_pred             hHHHHHHHHhcC----CChHHHHHHHHHhHHHHhhhChh----------------hhHHHHHHHHHHHcCCCcHHHHHHH
Q 009975          331 SLLPAIVELAED----RHWRVRLAIIEYIPLLASQLGVG----------------FFDDKLGALCMQWLQDKVYSIRDAA  390 (521)
Q Consensus       331 ~~~~~l~~~~~~----~~~~vr~~~~~~l~~l~~~~~~~----------------~~~~~l~~~l~~~l~d~~~~vr~~a  390 (521)
                      .++..+.++++.    .+..++..++-+++.+....-..                .+.+++...+.......+.+.+..+
T Consensus       431 e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~  510 (618)
T PF01347_consen  431 ELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVY  510 (618)
T ss_dssp             HHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHH
T ss_pred             HHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHH
Confidence            444444444432    45667777777777776443211                2345555555555667778888999


Q ss_pred             HHHHHHHHHHhCHHHHHhhhHHHHHhhhcCc---chHHHHHHHHHHHHhhcccChHHHhhcHHHHHHhhcCCC--CchHH
Q 009975          391 ANNLKRLAEEFGPEWAMQHITPQVLEMINNP---HYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDR--VPNIK  465 (521)
Q Consensus       391 ~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~---~~~~r~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~--~~~VR  465 (521)
                      +++||.+.        ....++.+...+.+.   ...+|.+|+.++..+.....     ..+.+.+++.+.|.  .++||
T Consensus       511 LkaLgN~g--------~~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~-----~~v~~~l~~I~~n~~e~~EvR  577 (618)
T PF01347_consen  511 LKALGNLG--------HPESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCP-----EKVREILLPIFMNTTEDPEVR  577 (618)
T ss_dssp             HHHHHHHT---------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-H-----HHHHHHHHHHHH-TTS-HHHH
T ss_pred             HHHhhccC--------CchhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCc-----HHHHHHHHHHhcCCCCChhHH
Confidence            99998764        235778888877665   67899999999998865432     23444455544443  56799


Q ss_pred             HHHHHHHHHHHhhhchHHHHhhHHHHHHHhcCCCCccHHHHHHHHHH
Q 009975          466 FNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQ  512 (521)
Q Consensus       466 ~~a~~~l~~~~~~~~~~~~~~~~~~~l~~l~~D~~~~vr~~a~~al~  512 (521)
                      .+|...|-..-+   +.   ..+..+...+..|++..|+......|+
T Consensus       578 iaA~~~lm~~~P---~~---~~l~~i~~~l~~E~~~QV~sfv~S~Lk  618 (618)
T PF01347_consen  578 IAAYLILMRCNP---SP---SVLQRIAQSLWNEPSNQVASFVYSHLK  618 (618)
T ss_dssp             HHHHHHHHHT------H---HHHHHHHHHHTT-S-HHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCC---CH---HHHHHHHHHHhhCchHHHHHHHHHhcC
Confidence            999876644322   11   233333444668999999988887763

Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=97.75  E-value=4.1e-05  Score=42.87  Aligned_cols=28  Identities=21%  Similarity=0.489  Sum_probs=14.8

Q ss_pred             HHHHHhhcCCCCchHHHHHHHHHHHHHh
Q 009975          450 LPVVINASKDRVPNIKFNVAKVLQSLIP  477 (521)
Q Consensus       450 l~~l~~~l~d~~~~VR~~a~~~l~~~~~  477 (521)
                      +|.+.++++|+++.||.+|+.+++.+++
T Consensus         2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~   29 (31)
T PF02985_consen    2 LPILLQLLNDPSPEVRQAAAECLGAIAE   29 (31)
T ss_dssp             HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence            4555555555555555555555555544

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=97.71  E-value=0.052  Score=52.28  Aligned_cols=212  Identities=17%  Similarity=0.152  Sum_probs=132.4

Q ss_pred             hhhHHHHHHHHHHhhcC-CChhHHHHHHHHHHHHhhhcCh-----hhhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHH
Q 009975          131 AHLKTDIMSIFEDLTQD-DQDSVRLLAVEGCAALGKLLEP-----QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCE  204 (521)
Q Consensus       131 ~~~~~~l~~~l~~l~~d-~~~~vr~~a~~~l~~l~~~~~~-----~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~  204 (521)
                      ..+...++..+...+.- .++.+..-.++.+..+..+..+     +.....++..+....+.++..||..+++.+..+..
T Consensus        41 ~~f~~~flr~vn~IL~~Kk~~si~dRil~fl~~f~~Y~~~~dpeg~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d  120 (885)
T COG5218          41 HEFSEEFLRVVNTILACKKNPSIPDRILSFLKRFFEYDMPDDPEGEELVAGTFYHLLRGTESKDKKVRKRSLQILALLSD  120 (885)
T ss_pred             HhhHHHHHHHHHHhhccccCCCcHHHHHHHHHHHHHhcCCCChhhhHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHH
Confidence            34445555554444331 1233333344555555553222     12344566667778888999999999999999998


Q ss_pred             HhCC--CccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhhhHHHHHhc-cCCcHHHHHHHHHHHHccc
Q 009975          205 AVGP--EPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELS-SDSSQHVRSALASVIMGMA  281 (521)
Q Consensus       205 ~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~-~d~~~~vr~~~~~~l~~i~  281 (521)
                      .+++  +.....++.-+.+-+-|.++.||..|+.+|..+-+.-+.+.  ..+...++..+ .||+..||+.+.-.+..  
T Consensus       121 ~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~nee--n~~~n~l~~~vqnDPS~EVRr~allni~v--  196 (885)
T COG5218         121 VVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEE--NRIVNLLKDIVQNDPSDEVRRLALLNISV--  196 (885)
T ss_pred             hcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChH--HHHHHHHHHHHhcCcHHHHHHHHHHHeee--
Confidence            8875  44556677777778889999999999999998876554332  22334444444 68999999998755432  


Q ss_pred             cccChHHHHHhHHHHHHHhhcCCChHHHHHHH-HHHHHhhhhhchhhHhhhHHHHHHHHhcCCChHHHHHHHHHhH
Q 009975          282 PLLGKDATIEQLLPIFLSLLKDEFPDVRLNII-SKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIP  356 (521)
Q Consensus       282 ~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~-~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~  356 (521)
                              .+.-.|.++.-..|-+...|+... .+|+++...-.. ...+.++ .+..-+.|....+|.++...+.
T Consensus       197 --------dnsT~p~IlERarDv~~anRr~vY~r~Lp~iGd~~~l-si~kri~-l~ewgl~dRe~sv~~a~~d~ia  262 (885)
T COG5218         197 --------DNSTYPCILERARDVSGANRRMVYERCLPRIGDLKSL-SIDKRIL-LMEWGLLDREFSVKGALVDAIA  262 (885)
T ss_pred             --------CCCcchhHHHHhhhhhHHHHHHHHHHHhhhhcchhhc-cccceeh-hhhhcchhhhhhHHHHHHHHHH
Confidence                    123467777777887776666543 344444322110 0112222 4555678888889988877664

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=97.68  E-value=0.0014  Score=62.16  Aligned_cols=93  Identities=23%  Similarity=0.130  Sum_probs=43.9

Q ss_pred             hcCCChhHHHHHHHHHHHHhhhcChhhhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcC
Q 009975          145 TQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLR  224 (521)
Q Consensus       145 ~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~  224 (521)
                      .+|.++.||.+|+-+++-++-.     -...+...+.-+.++.++.||...+-+++-.+..-|    .+..+.++..+..
T Consensus       561 vsD~nDDVrRAAViAlGfvc~~-----D~~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G----~~~a~diL~~L~~  631 (926)
T COG5116         561 VSDGNDDVRRAAVIALGFVCCD-----DRDLLVGTVELLSESHNFHVRAGVAVALGIACAGTG----DKVATDILEALMY  631 (926)
T ss_pred             cccCchHHHHHHHHheeeeEec-----CcchhhHHHHHhhhccchhhhhhhHHHhhhhhcCCc----cHHHHHHHHHHhh
Confidence            3455555565555555543311     011233333334444555566555555554332222    1223455555555


Q ss_pred             CChHHHHHHHHHhHHHHHhhhC
Q 009975          225 DNEAEVRIAAAGKVTKFCRILN  246 (521)
Q Consensus       225 d~~~~vr~~a~~~l~~l~~~~~  246 (521)
                      |+..-||.+|+-+++.+.....
T Consensus       632 D~~dfVRQ~AmIa~~mIl~Q~n  653 (926)
T COG5116         632 DTNDFVRQSAMIAVGMILMQCN  653 (926)
T ss_pred             CcHHHHHHHHHHHHHHHHhhcC
Confidence            5555666666555555554443

>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional

Probab=97.68  E-value=0.043  Score=61.67  Aligned_cols=245  Identities=12%  Similarity=0.125  Sum_probs=133.5

Q ss_pred             HHHHHHHHH-hcCCCChHHHHHHHHhHHHHHHhhCc--hhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhh-cC---
Q 009975           96 TELRSIYTQ-LCQDDMPMVRRSAASNLGKFAATVEP--AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKL-LE---  168 (521)
Q Consensus        96 ~~l~~~l~~-l~~~~~~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~-~~---  168 (521)
                      ++++..+.. +....+..||+.+++++..+....+.  ..-|+.++..+.....++.+.+-..|.+++..+... ++   
T Consensus      1181 kefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~ 1260 (1780)
T PLN03076       1181 NEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYIT 1260 (1780)
T ss_pred             HHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhcc
Confidence            344444443 23344567777777777766654432  224566666666666666666666666666655433 11   


Q ss_pred             h--hhhhhhhHHHHHHhcCCC-ChHHHHHHHHHHHHHHHHhCC-----------------------------------C-
Q 009975          169 P--QDCVAHILPVIVNFSQDK-SWRVRYMVANQLYELCEAVGP-----------------------------------E-  209 (521)
Q Consensus       169 ~--~~~~~~l~~~l~~~~~d~-~~~vR~~~~~~l~~i~~~~~~-----------------------------------~-  209 (521)
                      .  .....+++..+.++.+.. +.++-..+...|..++..+-.                                   + 
T Consensus      1261 ~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 1340 (1780)
T PLN03076       1261 ETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDD 1340 (1780)
T ss_pred             ccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhccccccccccccccccccccccccccccccccccchh
Confidence            1  123344555555554432 234444444444433222200                                   0 


Q ss_pred             --ccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCH----HH----HHHhhhHHHHHhcc----------------
Q 009975          210 --PTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP----EL----AIQHILPCVKELSS----------------  263 (521)
Q Consensus       210 --~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~----~~----~~~~~~~~l~~~~~----------------  263 (521)
                        ..|-.++-.+..+..|+..+||..|+.+|-.+....|.    +.    +...+.|.+..+-.                
T Consensus      1341 ~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~ 1420 (1780)
T PLN03076       1341 HLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHLFSLPLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVD 1420 (1780)
T ss_pred             HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccc
Confidence              01112333344456799999999999998877776653    22    22234555433210                


Q ss_pred             ------CCcHHHHHHHHHHHHccccccChH-----HHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhch----hhH
Q 009975          264 ------DSSQHVRSALASVIMGMAPLLGKD-----ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI----DLL  328 (521)
Q Consensus       264 ------d~~~~vr~~~~~~l~~i~~~~~~~-----~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~----~~~  328 (521)
                            +.+.+....+..++..++..+..-     ...+.++..+..++..++..+-+....+|..++...|.    +.+
T Consensus      1421 ~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng~~F~~~~W 1500 (1780)
T PLN03076       1421 GDQGELDQDAWLYETCTLALQLVVDLFVKFYPTVNPLLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGHLFSDEKW 1500 (1780)
T ss_pred             ccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhccCCHHHH
Confidence                  111134566666666666554431     12345566666777888899999999999988776653    333


Q ss_pred             hhhHHHHHHHHhc
Q 009975          329 SQSLLPAIVELAE  341 (521)
Q Consensus       329 ~~~~~~~l~~~~~  341 (521)
                       ..++..+.+++.
T Consensus      1501 -~~i~~~~~~lf~ 1512 (1780)
T PLN03076       1501 -LEVVLSLKEAAN 1512 (1780)
T ss_pred             -HHHHHHHHHHHH
Confidence             566666666553

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=97.65  E-value=0.11  Score=54.34  Aligned_cols=150  Identities=17%  Similarity=0.064  Sum_probs=110.9

Q ss_pred             hchhhHhhhHHHHHHHHhc----CCChHHHHHHHHHhHHHHhhhChhhhHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHH
Q 009975          323 IGIDLLSQSLLPAIVELAE----DRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQ-DKVYSIRDAAANNLKRL  397 (521)
Q Consensus       323 ~~~~~~~~~~~~~l~~~~~----~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l  397 (521)
                      .|++.+...+.|.+.+.+.    ..++.++.+|.-+++.+... +. .|.+.-+|.+++.++ .+++.+|..+.-+++.+
T Consensus       911 ~gek~lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~i-Sa-~fces~l~llftimeksp~p~IRsN~VvalgDl  988 (1251)
T KOG0414|consen  911 YGEKSLLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCI-SA-EFCESHLPLLFTIMEKSPSPRIRSNLVVALGDL  988 (1251)
T ss_pred             cChHHHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhh-hH-HHHHHHHHHHHHHHhcCCCceeeecchheccch
Confidence            3545555778888888773    34688999888888777643 22 345567788888877 79999999999999888


Q ss_pred             HHHhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChHHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHh
Q 009975          398 AEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIP  477 (521)
Q Consensus       398 ~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~  477 (521)
                      +-.+..  ..+...+.+...+.|++..+|.+|+..+.+++-.---.  ..-.++-+-.++.|+++.||.-|=.....+..
T Consensus       989 av~fpn--lie~~T~~Ly~rL~D~~~~vRkta~lvlshLILndmiK--VKGql~eMA~cl~D~~~~IsdlAk~FF~Els~ 1064 (1251)
T KOG0414|consen  989 AVRFPN--LIEPWTEHLYRRLRDESPSVRKTALLVLSHLILNDMIK--VKGQLSEMALCLEDPNAEISDLAKSFFKELSS 1064 (1251)
T ss_pred             hhhccc--ccchhhHHHHHHhcCccHHHHHHHHHHHHHHHHhhhhH--hcccHHHHHHHhcCCcHHHHHHHHHHHHHhhh
Confidence            754432  34566678888999999999999999999987421111  23456677788999999999888877777766


Q ss_pred             h
Q 009975          478 I  478 (521)
Q Consensus       478 ~  478 (521)
                      .
T Consensus      1065 k 1065 (1251)
T KOG0414|consen 1065 K 1065 (1251)
T ss_pred             c
Confidence            5

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=97.62  E-value=0.0075  Score=57.50  Aligned_cols=248  Identities=14%  Similarity=0.063  Sum_probs=139.0

Q ss_pred             ChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcChhhhhhhhHHHHHHhcCC-CC
Q 009975          110 MPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQD-KS  188 (521)
Q Consensus       110 ~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d-~~  188 (521)
                      .|.+...++-.+|-..-..    ...++...+.+++..++...-.+|...++-+.-.-    .....+.-+...... ..
T Consensus       424 ~~~l~yG~~LGiGL~~MgS----an~eiye~lKe~l~nD~a~~geAa~~gMGl~mLgt----~s~eai~dm~tya~ETqh  495 (926)
T COG5116         424 TPELAYGVCLGIGLINMGS----ANREIYEKLKELLKNDRALLGEAAVYGMGLLMLGT----WSVEAIEDMRTYAGETQH  495 (926)
T ss_pred             cHHHHHHHHhhhcchhccc----ccHHHHHHHHHHHhcchhhhhhhhhhccceeeecC----CCHHHHHHHHHHhcchhh
Confidence            4577777776666543222    22344555566555544433334433333222111    112233333333332 33


Q ss_pred             hHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhhhHHHHHhccCCcHH
Q 009975          189 WRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQH  268 (521)
Q Consensus       189 ~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~  268 (521)
                      .++++...-.+.-+.-  +.   .+..-..+.+++.|.++-.|...+-+++.----.|.......+++.   ..+|.+..
T Consensus       496 e~i~Rglgig~aLi~y--gr---qe~add~I~ell~d~ds~lRy~G~fs~alAy~GTgn~~vv~~lLh~---avsD~nDD  567 (926)
T COG5116         496 ERIKRGLGIGFALILY--GR---QEMADDYINELLYDKDSILRYNGVFSLALAYVGTGNLGVVSTLLHY---AVSDGNDD  567 (926)
T ss_pred             hhHHhhhhhhhhHhhh--hh---HHHHHHHHHHHhcCchHHhhhccHHHHHHHHhcCCcchhHhhhhee---ecccCchH
Confidence            4455544444332221  11   1123346677888888888887765554322222333322223222   25788999


Q ss_pred             HHHHHHHHHHccccccChHHHHHhHHHHHHH-hhcCCChHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHhcCCChHH
Q 009975          269 VRSALASVIMGMAPLLGKDATIEQLLPIFLS-LLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRV  347 (521)
Q Consensus       269 vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~-~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v  347 (521)
                      ||++++-+++-++  +.+    ..+++..++ +.++.++.||.+.+-+|+-.+...|.    +..+..+..+..|++.-|
T Consensus       568 VrRAAViAlGfvc--~~D----~~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~----~~a~diL~~L~~D~~dfV  637 (926)
T COG5116         568 VRRAAVIALGFVC--CDD----RDLLVGTVELLSESHNFHVRAGVAVALGIACAGTGD----KVATDILEALMYDTNDFV  637 (926)
T ss_pred             HHHHHHHheeeeE--ecC----cchhhHHHHHhhhccchhhhhhhHHHhhhhhcCCcc----HHHHHHHHHHhhCcHHHH
Confidence            9999988888765  221    123444444 44566899999999999988877664    345667777888999999


Q ss_pred             HHHHHHHhHHHHhhhChhhh--HHHHHHHHHHHcCCCc
Q 009975          348 RLAIIEYIPLLASQLGVGFF--DDKLGALCMQWLQDKV  383 (521)
Q Consensus       348 r~~~~~~l~~l~~~~~~~~~--~~~l~~~l~~~l~d~~  383 (521)
                      |..++-+.+.+..++.++.-  ...+..-+.+.+.|..
T Consensus       638 RQ~AmIa~~mIl~Q~n~~Lnp~v~~I~k~f~~vI~~Kh  675 (926)
T COG5116         638 RQSAMIAVGMILMQCNPELNPNVKRIIKKFNRVIVDKH  675 (926)
T ss_pred             HHHHHHHHHHHHhhcCcccChhHHHHHHHHHHHHhhhh
Confidence            99999888888877766421  2334555555555544

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=97.61  E-value=0.043  Score=50.53  Aligned_cols=214  Identities=16%  Similarity=0.177  Sum_probs=117.5

Q ss_pred             HhhcCCChHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChhhh-----------
Q 009975          299 SLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF-----------  367 (521)
Q Consensus       299 ~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~-----------  367 (521)
                      ..++..++.+|..++.++|-++-. +.+ .....++.+...++..+..+|..+++++..+....|.+.+           
T Consensus        34 P~v~~~~~~vR~~al~cLGl~~Ll-d~~-~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~  111 (298)
T PF12719_consen   34 PAVQSSDPAVRELALKCLGLCCLL-DKE-LAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESDNDESVD  111 (298)
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHHh-ChH-HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhccCccch
Confidence            455666667777777776665432 111 2234455555544444666777777766666655554322           


Q ss_pred             HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhh----cCcchHHHHHHHHHHHHhhcccC--
Q 009975          368 DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMI----NNPHYLYRMTILRAISLLAPVMG--  441 (521)
Q Consensus       368 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l----~~~~~~~r~~a~~~l~~l~~~~~--  441 (521)
                      ...+...+...+.+.++++|..|++.+.++.-.-.... ...++..|.-..    ..++.++|+....++...+..-.  
T Consensus       112 ~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~-~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ffp~y~~s~~~~  190 (298)
T PF12719_consen  112 SKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD-PPKVLSRLLLLYFNPSTEDNQRLRQCLSVFFPVYASSSPEN  190 (298)
T ss_pred             HhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc-HHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHcCCHHH
Confidence            23567778888888888899999988888763221110 123333333322    23457788877777776664222  


Q ss_pred             hHHHhhcHHHHHHhhcCCCC----chHHHHHHHHHHHHHhhhchH--------------HHHhhHHHHHHHhcCCCCcc-
Q 009975          442 SEITCSRLLPVVINASKDRV----PNIKFNVAKVLQSLIPIVDQS--------------MVEKTIRPCLVELTEDPDVD-  502 (521)
Q Consensus       442 ~~~~~~~il~~l~~~l~d~~----~~VR~~a~~~l~~~~~~~~~~--------------~~~~~~~~~l~~l~~D~~~~-  502 (521)
                      ...+.+.++|.+..+.+.+.    +.-.....+....++....+.              .........+..+.+|+..+ 
T Consensus       191 Q~~l~~~f~~~l~~~~~~~~~~~~~~~~v~~~~v~~~lv~lt~~~~~~~~~~~~~~~~~~h~~La~~il~~i~~~~~~~~  270 (298)
T PF12719_consen  191 QERLAEAFLPTLRTLSNAPDELDSPLAMVSPSQVASFLVDLTDPSKLVKESNQEIQNESVHVDLAIDILNEILSDPEKEK  270 (298)
T ss_pred             HHHHHHHHHHHHHHHHhCcccccCchhhCCHHHHHHHHHHHCChhhccCccccccccccHHHHHHHHHHHHHHhccccch
Confidence            12344556666666544332    222223334444444332111              12234455666667666665 


Q ss_pred             -HHHHHHHHHHHHH
Q 009975          503 -VRFFATQAIQSID  515 (521)
Q Consensus       503 -vr~~a~~al~~l~  515 (521)
                       .+..-.+++..+.
T Consensus       271 ~~~k~~~~~L~~L~  284 (298)
T PF12719_consen  271 EERKALCKALSKLE  284 (298)
T ss_pred             HHHHHHHHHHhccc
Confidence             7777777777654

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []

Probab=97.61  E-value=0.017  Score=59.55  Aligned_cols=230  Identities=18%  Similarity=0.186  Sum_probs=119.7

Q ss_pred             HHHHHHHHHHhcCC-CChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhc-Chhhh
Q 009975           95 KTELRSIYTQLCQD-DMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLL-EPQDC  172 (521)
Q Consensus        95 ~~~l~~~l~~l~~~-~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~-~~~~~  172 (521)
                      .+.|..+..++... .....|.....+|.....    ..    -+..+.+++....-. -..+...+..+.... .+.  
T Consensus       361 ~~~L~~l~~~~~~~~~~~~~r~~~lDal~~aGT----~~----av~~i~~~I~~~~~~-~~ea~~~l~~l~~~~~~Pt--  429 (618)
T PF01347_consen  361 YEDLEELYKQLKSKSKKEQARKIFLDALPQAGT----NP----AVKFIKDLIKSKKLT-DDEAAQLLASLPFHVRRPT--  429 (618)
T ss_dssp             HHHHHHHHHHHTTS---HHHHHHHHHHHHHH-S----HH----HHHHHHHHHHTT-S--HHHHHHHHHHHHHT-------
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHHcCC----HH----HHHHHHHHHHcCCCC-HHHHHHHHHHHHhhcCCCC--
Confidence            34555555554433 345666666666655432    22    223334444432222 122445555555444 221  


Q ss_pred             hhhhHHHHHHhcCC----CChHHHHHHHHHHHHHHHHhCCC------------ccccchHHHHHHhc----CCChHHHHH
Q 009975          173 VAHILPVIVNFSQD----KSWRVRYMVANQLYELCEAVGPE------------PTRMDLVPAYVRLL----RDNEAEVRI  232 (521)
Q Consensus       173 ~~~l~~~l~~~~~d----~~~~vR~~~~~~l~~i~~~~~~~------------~~~~~l~~~l~~~l----~d~~~~vr~  232 (521)
                       ..++..+..+++.    .++.+|..++-+++.++......            .....+++.+...+    ...+...+.
T Consensus       430 -~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~  508 (618)
T PF01347_consen  430 -EELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKI  508 (618)
T ss_dssp             -HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHH
T ss_pred             -HHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHH
Confidence             2344444444443    56789999999999998754322            22345555555544    355668888


Q ss_pred             HHHHhHHHHHhhhCHHHHHHhhhHHHHHhccCC---cHHHHHHHHHHHHccccccChHHHHHhHHHHHHHhhcCCChHHH
Q 009975          233 AAAGKVTKFCRILNPELAIQHILPCVKELSSDS---SQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVR  309 (521)
Q Consensus       233 ~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~---~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr  309 (521)
                      .++++|+.++.        +..++.+...+.+.   +..+|.+|++++..++...+. ...+.++|++.+-  ..+.++|
T Consensus       509 ~~LkaLgN~g~--------~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~-~v~~~l~~I~~n~--~e~~EvR  577 (618)
T PF01347_consen  509 VYLKALGNLGH--------PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPE-KVREILLPIFMNT--TEDPEVR  577 (618)
T ss_dssp             HHHHHHHHHT---------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HH-HHHHHHHHHHH-T--TS-HHHH
T ss_pred             HHHHHhhccCC--------chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcH-HHHHHHHHHhcCC--CCChhHH
Confidence            99999998764        23556666666555   678999999999988544432 2233444444432  2457899


Q ss_pred             HHHHHHHHHhhhhhchhhHhhhHHHHHHHH-hcCCChHHHHHHHHH
Q 009975          310 LNIISKLDQVNQVIGIDLLSQSLLPAIVEL-AEDRHWRVRLAIIEY  354 (521)
Q Consensus       310 ~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~vr~~~~~~  354 (521)
                      .+|...+-...+.       ..++..+... -.+++..|+..+...
T Consensus       578 iaA~~~lm~~~P~-------~~~l~~i~~~l~~E~~~QV~sfv~S~  616 (618)
T PF01347_consen  578 IAAYLILMRCNPS-------PSVLQRIAQSLWNEPSNQVASFVYSH  616 (618)
T ss_dssp             HHHHHHHHHT----------HHHHHHHHHHHTT-S-HHHHHHHHHH
T ss_pred             HHHHHHHHhcCCC-------HHHHHHHHHHHhhCchHHHHHHHHHh
Confidence            9998777664332       2334444443 356777777655443

Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.

>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=97.58  E-value=0.093  Score=51.69  Aligned_cols=140  Identities=14%  Similarity=0.113  Sum_probs=99.6

Q ss_pred             HHHHHHHHcCC----CcHHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhh-cCcchHHHHHHHHHHHHhhcccChHHH
Q 009975          371 LGALCMQWLQD----KVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMI-NNPHYLYRMTILRAISLLAPVMGSEIT  445 (521)
Q Consensus       371 l~~~l~~~l~d----~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l-~~~~~~~r~~a~~~l~~l~~~~~~~~~  445 (521)
                      +-|+......+    .++.+..+|.-++..+.- +..++ ...-+|.+...+ ++|++++|..|+-.+|.+.-.+..  +
T Consensus       893 F~pvVeE~csn~~~~sd~~lq~aA~l~L~klMC-lS~~f-c~ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~--~  968 (1128)
T COG5098         893 FKPVVEEGCSNSSRFSDEELQVAAYLSLYKLMC-LSFEF-CSEHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNT--T  968 (1128)
T ss_pred             hhHHHHHHhccccccCCHHHHHHHHHHHHHHHH-HhHHH-HHHHHHHHHHHHhhCCCcceeccceeeccccceehhh--h
Confidence            55666555554    677777777777776652 23333 344567776654 589999999999888887754432  3


Q ss_pred             hhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchHHHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 009975          446 CSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDH  516 (521)
Q Consensus       446 ~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~~~~~~~~l~~l~~D~~~~vr~~a~~al~~l~~  516 (521)
                      .+..-.+++.-+.|.+..||..++-++..+.-+ |.-.+ .--++.+..++.|+|..+...|..-+..+.+
T Consensus       969 ~de~t~yLyrrL~De~~~V~rtclmti~fLila-gq~KV-KGqlg~ma~~L~deda~Isdmar~fft~~a~ 1037 (1128)
T COG5098         969 ADEHTHYLYRRLGDEDADVRRTCLMTIHFLILA-GQLKV-KGQLGKMALLLTDEDAEISDMARHFFTQIAK 1037 (1128)
T ss_pred             hHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHc-cceee-ccchhhhHhhccCCcchHHHHHHHHHHHHHh
Confidence            456677889999999999999999998887654 21122 3345777888999999999999888877765

>smart00638 LPD_N Lipoprotein N-terminal Domain

Probab=97.58  E-value=0.012  Score=60.15  Aligned_cols=215  Identities=16%  Similarity=0.169  Sum_probs=118.9

Q ss_pred             HHHHHHHHHHHHccccccChHHHHHhHHHHHHHhhcCCC--hHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHhcC--
Q 009975          267 QHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEF--PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAED--  342 (521)
Q Consensus       267 ~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~--~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~--  342 (521)
                      +..|....+++....    ..    ..+..+...+....  +.....++..+......-.     ..++..+.+++++  
T Consensus       340 ~~~r~~~~Dal~~~G----T~----~a~~~i~~~i~~~~~~~~ea~~~~~~~~~~~~~Pt-----~~~l~~l~~l~~~~~  406 (574)
T smart00638      340 KKARRIFLDAVAQAG----TP----PALKFIKQWIKNKKITPLEAAQLLAVLPHTARYPT-----EEILKALFELAESPE  406 (574)
T ss_pred             HHHHHHHHHHHHhcC----CH----HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhcCC-----HHHHHHHHHHhcCcc
Confidence            566777777766654    22    22333444443322  2233333333333332222     4456666666554  


Q ss_pred             --CChHHHHHHHHHhHHHHhhhCh----------hhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHHHHHhhh
Q 009975          343 --RHWRVRLAIIEYIPLLASQLGV----------GFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHI  410 (521)
Q Consensus       343 --~~~~vr~~~~~~l~~l~~~~~~----------~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l  410 (521)
                        +++.+|..++-+++.+......          +.+.+++...+....++.+.+.+..++++||.+..    .    ..
T Consensus       407 ~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~----~----~~  478 (574)
T smart00638      407 VQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGH----P----SS  478 (574)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCC----h----hH
Confidence              3567888888888888763321          12233344444444556677777888888886542    2    23


Q ss_pred             HHHHHhhhc---CcchHHHHHHHHHHHHhhcccChHHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchHHHHhh
Q 009975          411 TPQVLEMIN---NPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKT  487 (521)
Q Consensus       411 ~~~l~~~l~---~~~~~~r~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~~~~  487 (521)
                      ++.+...+.   +....+|..|+.++..++...... +.+.+++....  .+..++||.+|+..+-..-+   +.   ..
T Consensus       479 i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~-v~~~l~~i~~n--~~e~~EvRiaA~~~lm~t~P---~~---~~  549 (574)
T smart00638      479 IKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRK-VQEVLLPIYLN--RAEPPEVRMAAVLVLMETKP---SV---AL  549 (574)
T ss_pred             HHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchH-HHHHHHHHHcC--CCCChHHHHHHHHHHHhcCC---CH---HH
Confidence            333443333   235789999999999887644432 23334443322  23477899999877644322   11   22


Q ss_pred             HHHHHHHhcCCCCccHHHHHHHHH
Q 009975          488 IRPCLVELTEDPDVDVRFFATQAI  511 (521)
Q Consensus       488 ~~~~l~~l~~D~~~~vr~~a~~al  511 (521)
                      +..+...+..|++..|+......|
T Consensus       550 l~~ia~~l~~E~~~QV~sfv~S~l  573 (574)
T smart00638      550 LQRIAELLNKEPNLQVASFVYSHI  573 (574)
T ss_pred             HHHHHHHHhhcCcHHHHHHhHHhh
Confidence            333334456788889988877654

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=97.37  E-value=0.0074  Score=61.74  Aligned_cols=207  Identities=17%  Similarity=0.130  Sum_probs=138.0

Q ss_pred             HHHHHHHHHHHhhhhhchh----hHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhh---hChhhhHHHHHHHHHHHcC
Q 009975          308 VRLNIISKLDQVNQVIGID----LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQ---LGVGFFDDKLGALCMQWLQ  380 (521)
Q Consensus       308 vr~~a~~~l~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~---~~~~~~~~~l~~~l~~~l~  380 (521)
                      .|..|+.-|+++.. +|+=    .+.-.++|...++++++....|...+.....+...   +..+.+.+..-..+++.+.
T Consensus       486 HRlRAL~LL~RFLD-lGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~  564 (1387)
T KOG1517|consen  486 HRLRALVLLARFLD-LGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLD  564 (1387)
T ss_pred             HHHHHHHHHHHHhc-cchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEec
Confidence            36667777777765 3321    13357899999999999988888777665554422   2222222221112223333


Q ss_pred             C---CcHHHHHHHHHHHHHHHHHh--CHHH-HHhhhHHHHHhhhcCc-chHHHHHHHHHHHHhhcccChHHHh---hcHH
Q 009975          381 D---KVYSIRDAAANNLKRLAEEF--GPEW-AMQHITPQVLEMINNP-HYLYRMTILRAISLLAPVMGSEITC---SRLL  450 (521)
Q Consensus       381 d---~~~~vr~~a~~~l~~l~~~~--~~~~-~~~~l~~~l~~~l~~~-~~~~r~~a~~~l~~l~~~~~~~~~~---~~il  450 (521)
                      +   -+++-|..|+-.|+.++..+  |.+. ....++......++|+ .+-+|+.++-++|.+-+.+....+.   ....
T Consensus       565 ~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~Ah  644 (1387)
T KOG1517|consen  565 PSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAH  644 (1387)
T ss_pred             CcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHH
Confidence            3   23477888888888888766  4333 2356777777888884 7999999999999998866654442   3456


Q ss_pred             HHHHhhcCCCCchHHHHHHHHHHHHHhhh----chH--------------HHHhhHHH----HHHHhcCCCCccHHHHHH
Q 009975          451 PVVINASKDRVPNIKFNVAKVLQSLIPIV----DQS--------------MVEKTIRP----CLVELTEDPDVDVRFFAT  508 (521)
Q Consensus       451 ~~l~~~l~d~~~~VR~~a~~~l~~~~~~~----~~~--------------~~~~~~~~----~l~~l~~D~~~~vr~~a~  508 (521)
                      ..++.++.|+.++||-+|+.+|+.+....    +..              ...+...+    .+..+.+|..+-||...+
T Consensus       645 ekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~  724 (1387)
T KOG1517|consen  645 EKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVV  724 (1387)
T ss_pred             HHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHH
Confidence            77888999999999999999999998752    111              00122222    445567899999998888


Q ss_pred             HHHHHHH
Q 009975          509 QAIQSID  515 (521)
Q Consensus       509 ~al~~l~  515 (521)
                      -++..+.
T Consensus       725 v~ls~~~  731 (1387)
T KOG1517|consen  725 VALSHFV  731 (1387)
T ss_pred             HHHHHHH
Confidence            7776554

>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]

Probab=97.36  E-value=0.19  Score=50.01  Aligned_cols=411  Identities=14%  Similarity=0.095  Sum_probs=211.3

Q ss_pred             HHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCC-ChhHHHHHHHHHHH-HhhhcCh----
Q 009975           96 TELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDD-QDSVRLLAVEGCAA-LGKLLEP----  169 (521)
Q Consensus        96 ~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~-~~~vr~~a~~~l~~-l~~~~~~----  169 (521)
                      .++++.+.+. -|.|+.+|..|-..|..+-+.   +.+   ++.++.-+..|+ ...||.+|.--+.+ +....+.    
T Consensus         3 ~ellqcf~qT-ldada~~rt~AE~~Lk~leKq---PgF---v~all~i~s~de~~lnvklsAaIYfKNkI~rsWss~~d~   75 (970)
T COG5656           3 EELLQCFLQT-LDADAGKRTIAEAMLKDLEKQ---PGF---VMALLHICSKDEGDLNVKLSAAIYFKNKIIRSWSSKRDD   75 (970)
T ss_pred             HHHHHHHHHH-hccCcchhhHHHHHHHHhhcC---CcH---HHHHHHHHhhccCCchhhHHHHHHHhhhhhhhhhhcccC
Confidence            3455555443 356788998888877776442   112   222333344553 45777766443333 3222221    


Q ss_pred             -------hhhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHH
Q 009975          170 -------QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFC  242 (521)
Q Consensus       170 -------~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~  242 (521)
                             ...+..++..+...+.......|......+..+...-.+...+. +.|...+++..++...-..++.++.++.
T Consensus        76 ~i~~Dek~e~K~~lienil~v~l~sp~~tr~~l~ail~~I~seD~ps~~wg-l~p~~~nll~s~ea~~vy~gLlcl~elf  154 (970)
T COG5656          76 GIKADEKSEAKKYLIENILDVFLYSPEVTRTALNAILVNIFSEDKPSDLWG-LFPKAANLLRSSEANHVYTGLLCLEELF  154 (970)
T ss_pred             CCCCcccHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhccccCchhhcc-cchHHHHhhcccchhHHHHHHHHHHHHH
Confidence                   12344456666665554443444333333332222111112233 8888999999998888888899998888


Q ss_pred             hhhC-----H----HHHHHhhhHHHHHhccC----CcHHH---HHHHHHHHH-----ccccccChHHHHHhHHHHHHHhh
Q 009975          243 RILN-----P----ELAIQHILPCVKELSSD----SSQHV---RSALASVIM-----GMAPLLGKDATIEQLLPIFLSLL  301 (521)
Q Consensus       243 ~~~~-----~----~~~~~~~~~~l~~~~~d----~~~~v---r~~~~~~l~-----~i~~~~~~~~~~~~l~~~l~~~l  301 (521)
                      +...     .    ..+.....|.+.+....    .|...   -.-.++.+.     .+-..+........+....+..+
T Consensus       155 kayRwk~ndeq~di~~li~alfpile~~g~nl~s~~ny~s~e~l~LILk~fKsvcy~~LP~~lsa~e~f~sw~ql~l~i~  234 (970)
T COG5656         155 KAYRWKYNDEQVDILMLITALFPILEKVGGNLESQGNYGSVETLMLILKSFKSVCYYSLPDFLSAIETFSSWFQLSLRIL  234 (970)
T ss_pred             HHHhhhccchHhhHHHHHHHhhHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHhhCCHHHccchhhHHHHHHHHHHH
Confidence            8652     1    12334455666544321    22211   111111111     11111211111223333334444


Q ss_pred             cCC--------ChHH---------HHHHHHHHHHhhhhhchhh----------HhhhHHHHHHHH-h-------cCCChH
Q 009975          302 KDE--------FPDV---------RLNIISKLDQVNQVIGIDL----------LSQSLLPAIVEL-A-------EDRHWR  346 (521)
Q Consensus       302 ~d~--------~~~v---------r~~a~~~l~~~~~~~~~~~----------~~~~~~~~l~~~-~-------~~~~~~  346 (521)
                      +-+        +++|         ++.|...+.++.+..+...          .....+|.+.+. +       +..-|-
T Consensus       235 qkplp~evlsldpevRs~~~wvKckKWa~ynLyR~fqRy~k~s~~~~y~~f~~~f~t~vp~il~tffkqie~wgqgqLWl  314 (970)
T COG5656         235 QKPLPNEVLSLDPEVRSLSKWVKCKKWAAYNLYRSFQRYIKKSYKKSYLSFYITFMTRVPMILATFFKQIEEWGQGQLWL  314 (970)
T ss_pred             cCCCCHHHhccChhhccccchhhhhHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCeec
Confidence            322        4444         4567777777665443211          011244444332 1       112222


Q ss_pred             HHHHHHHHhHHHHhhhC-hhhh------------HHHHHHHHH------HHc-CCCcHHHHHH-------------HHHH
Q 009975          347 VRLAIIEYIPLLASQLG-VGFF------------DDKLGALCM------QWL-QDKVYSIRDA-------------AANN  393 (521)
Q Consensus       347 vr~~~~~~l~~l~~~~~-~~~~------------~~~l~~~l~------~~l-~d~~~~vr~~-------------a~~~  393 (521)
                      - ...+-.+..+...+- .+.+            ...+.|.+-      .++ .|++.-+|+.             |..+
T Consensus       315 s-d~~LYfi~~Fve~cv~~d~tw~l~ePhlq~ii~~vIfPllc~see~eElfEnDp~eyirry~df~d~g~spdlaal~f  393 (970)
T COG5656         315 S-DIELYFIDFFVELCVDADQTWRLMEPHLQYIISGVIFPLLCLSEEEEELFENDPDEYIRRYYDFFDNGLSPDLAALFF  393 (970)
T ss_pred             c-hHHHHHHHHHHHHHhhhHhhHhhhccHHHHHHHhhhhhhcCCChhhHHHHhcCHHHHHHHhcchhcCCCChhHHHHHH
Confidence            1 112223333333221 1111            122333321      111 2444444432             2222


Q ss_pred             HHHHHHHhCHHHHHhhhHHHHHhhhc-----C---cchHHHHHHHHHHHHhhcccCh-----HHHhhcHHHHHHhhcCCC
Q 009975          394 LKRLAEEFGPEWAMQHITPQVLEMIN-----N---PHYLYRMTILRAISLLAPVMGS-----EITCSRLLPVVINASKDR  460 (521)
Q Consensus       394 l~~l~~~~~~~~~~~~l~~~l~~~l~-----~---~~~~~r~~a~~~l~~l~~~~~~-----~~~~~~il~~l~~~l~d~  460 (521)
                      +-..... ..+...+.+++.+.+.++     +   .|.+-.+.|++.+..+...+..     ..+..-+++++...++++
T Consensus       394 l~~~~sK-rke~TfqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~  472 (970)
T COG5656         394 LIISKSK-RKEETFQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSN  472 (970)
T ss_pred             HHHHhcc-cchhhhhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCc
Confidence            2222222 222223557777777662     2   3567778899999888874332     123345678888889999


Q ss_pred             CchHHHHHHHHHHHHHhhhchHHHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 009975          461 VPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDH  516 (521)
Q Consensus       461 ~~~VR~~a~~~l~~~~~~~~~~~~~~~~~~~l~~l~~D~~~~vr~~a~~al~~l~~  516 (521)
                      .--.|.+||..++.+...+...-....+.....+++++.+-.|+..|+.|++.+..
T Consensus       473 ygfL~Srace~is~~eeDfkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~  528 (970)
T COG5656         473 YGFLKSRACEFISTIEEDFKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIF  528 (970)
T ss_pred             ccchHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHh
Confidence            99999999999999977666666666777777788888999999999999987643

>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.34  E-value=0.21  Score=50.10  Aligned_cols=181  Identities=14%  Similarity=0.207  Sum_probs=114.4

Q ss_pred             HhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChhhhHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHHHHhC--HH
Q 009975          328 LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDK-VYSIRDAAANNLKRLAEEFG--PE  404 (521)
Q Consensus       328 ~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~--~~  404 (521)
                      +.+.++|.+. ...+....+|..++-.++.....--+....+.+-..+.+++.|. +..||.+++.++..++....  .+
T Consensus       485 l~~~llpEl~-~~~~~~RiiRRRVa~ilg~Wvsvq~~~e~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~d  563 (978)
T KOG1993|consen  485 LQEALLPELA-NDHGNSRIIRRRVAWILGQWVSVQQKLELKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSED  563 (978)
T ss_pred             HHHhhCHHhh-hcccchhHHHHHHHHHHhhhhheechHhHHHHHHHHHHHhcCccccceeehHHHHHHHHhhhhccCChh
Confidence            3455566555 22233455788888888887765444445566666778899997 78899999999999887553  22


Q ss_pred             HH---HhhhHHHHHhhhcC-cchHHHHHHHHHHHHhhcccChHH--H---hhcHHHHHHhhcCCCCchHHHHHHHHHHHH
Q 009975          405 WA---MQHITPQVLEMINN-PHYLYRMTILRAISLLAPVMGSEI--T---CSRLLPVVINASKDRVPNIKFNVAKVLQSL  475 (521)
Q Consensus       405 ~~---~~~l~~~l~~~l~~-~~~~~r~~a~~~l~~l~~~~~~~~--~---~~~il~~l~~~l~d~~~~VR~~a~~~l~~~  475 (521)
                      .+   .+.++..+..++.. .....|...+..++.++...+.-.  +   .-.++|.+++.-+ +.+-.|.+.+.++..+
T Consensus       564 sFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P~~~~ivq~lp~LWe~s~-~e~lLr~alL~~L~~l  642 (978)
T KOG1993|consen  564 SFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHIAPYASTIVQYLPLLWEESE-EEPLLRCALLATLRNL  642 (978)
T ss_pred             hhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhc-cCcHHHHHHHHHHHHH
Confidence            21   23334444444433 345667888888888887555321  1   1245666666555 5778999999999999


Q ss_pred             HhhhchHH--HHhhHHHHHHHhcCCCCccHHHHHHHH
Q 009975          476 IPIVDQSM--VEKTIRPCLVELTEDPDVDVRFFATQA  510 (521)
Q Consensus       476 ~~~~~~~~--~~~~~~~~l~~l~~D~~~~vr~~a~~a  510 (521)
                      +..+|.+.  +.+.+.|.+....+-..++-.....++
T Consensus       643 V~alg~qS~~~~~fL~pVIel~~D~~sP~hv~L~EDg  679 (978)
T KOG1993|consen  643 VNALGAQSFEFYPFLYPVIELSTDPSSPEHVYLLEDG  679 (978)
T ss_pred             HHHhccCCccchHHHHHHHHHhcCCCCCceeehhhhH
Confidence            99988653  346677776644333344443443333

>KOG2933 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.32  E-value=0.012  Score=51.94  Aligned_cols=174  Identities=14%  Similarity=0.135  Sum_probs=108.8

Q ss_pred             chHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHH--HHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccChHHHH-
Q 009975          214 DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE--LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATI-  290 (521)
Q Consensus       214 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~-  290 (521)
                      ..+......+.+++|+....++..+..+.......  .-...++..+.+-+.++...|-.+++.+++.+...++..... 
T Consensus        88 ~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~  167 (334)
T KOG2933|consen   88 AALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQE  167 (334)
T ss_pred             HHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444555667778888888888777777765432  223445555566667777777778888888877766654322 


Q ss_pred             -HhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChh----
Q 009975          291 -EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG----  365 (521)
Q Consensus       291 -~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~----  365 (521)
                       +.++-.+..--.+++..||..|-.+|..+.....+.    .+++.+.....+.++++|..++.++.....-+|-.    
T Consensus       168 ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~----~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl~v~~~~~  243 (334)
T KOG2933|consen  168 LDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ----KLLRKLIPILQHSNPRVRAKAALCFSRCVIRLGVLPVLL  243 (334)
T ss_pred             HHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH----HHHHHHHHHHhhhchhhhhhhhccccccceeccccchhh
Confidence             223333333334556778888888888888776664    34555555567778888888877777666666522    


Q ss_pred             hhHHHHHHHHHHHcCCCcHHHHHHHH
Q 009975          366 FFDDKLGALCMQWLQDKVYSIRDAAA  391 (521)
Q Consensus       366 ~~~~~l~~~l~~~l~d~~~~vr~~a~  391 (521)
                      ++...+.+.+-+-+.|.-+.+|.+|-
T Consensus       244 ~~~~dl~~a~~~~~~d~Lp~~~~~a~  269 (334)
T KOG2933|consen  244 QGSCDLSRAAQEQGSDKLPELREAAR  269 (334)
T ss_pred             HhHHHHHHHHHhhhcccccccccchh
Confidence            22334455555556666666665443

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=97.30  E-value=0.01  Score=60.69  Aligned_cols=209  Identities=13%  Similarity=0.166  Sum_probs=139.5

Q ss_pred             HHHHHHHHHccccccChHHH---HHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhc---hhhHhhhHHHHHHHHhcC-
Q 009975          270 RSALASVIMGMAPLLGKDAT---IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG---IDLLSQSLLPAIVELAED-  342 (521)
Q Consensus       270 r~~~~~~l~~i~~~~~~~~~---~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~---~~~~~~~~~~~l~~~~~~-  342 (521)
                      |.-|+..++.+.+.=+-...   .--++|+.+++|+++-.+.|...+-...++...-.   .+.+.+..-..+.+.+.+ 
T Consensus       487 RlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~  566 (1387)
T KOG1517|consen  487 RLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPS  566 (1387)
T ss_pred             HHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCc
Confidence            44556666666543222111   12579999999999999999888777777654321   111111111111111222 


Q ss_pred             --CChHHHHHHHHHhHHHHhhhCh---hhhHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHHHHhCHHHH---HhhhHHH
Q 009975          343 --RHWRVRLAIIEYIPLLASQLGV---GFFDDKLGALCMQWLQDK-VYSIRDAAANNLKRLAEEFGPEWA---MQHITPQ  413 (521)
Q Consensus       343 --~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~~~~---~~~l~~~  413 (521)
                        -++..|..++..|..+...+..   ..+...++.+++..++|+ .+-.|+-++-+||.+-+.+...-.   .......
T Consensus       567 ~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~Ahek  646 (1387)
T KOG1517|consen  567 QAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEK  646 (1387)
T ss_pred             CCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHH
Confidence              2347788888888888877532   344566788899999995 799999999999999887754321   3445667


Q ss_pred             HHhhhcCcchHHHHHHHHHHHHhhcccChH------HH------------hhcHHH----HHHhhcCCCCchHHHHHHHH
Q 009975          414 VLEMINNPHYLYRMTILRAISLLAPVMGSE------IT------------CSRLLP----VVINASKDRVPNIKFNVAKV  471 (521)
Q Consensus       414 l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~------~~------------~~~il~----~l~~~l~d~~~~VR~~a~~~  471 (521)
                      |...+.|+-+.||.+|+.++|.+.......      ..            .+..++    .+...++|.++-||...+.+
T Consensus       647 L~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~  726 (1387)
T KOG1517|consen  647 LILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVA  726 (1387)
T ss_pred             HHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHH
Confidence            777889999999999999999999753110      00            123333    56778899999999999999


Q ss_pred             HHHHHhh
Q 009975          472 LQSLIPI  478 (521)
Q Consensus       472 l~~~~~~  478 (521)
                      +..++-.
T Consensus       727 ls~~~~g  733 (1387)
T KOG1517|consen  727 LSHFVVG  733 (1387)
T ss_pred             HHHHHHh
Confidence            9887653

>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=97.27  E-value=0.062  Score=50.68  Aligned_cols=127  Identities=15%  Similarity=0.190  Sum_probs=87.1

Q ss_pred             ChHHHHHHHHHhHHHHhhhChhhh---HHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHHHHh-----C----------H
Q 009975          344 HWRVRLAIIEYIPLLASQLGVGFF---DDKLGALCMQWLQ--DKVYSIRDAAANNLKRLAEEF-----G----------P  403 (521)
Q Consensus       344 ~~~vr~~~~~~l~~l~~~~~~~~~---~~~l~~~l~~~l~--d~~~~vr~~a~~~l~~l~~~~-----~----------~  403 (521)
                      ....|.+++..+..+++..+....   ...+...+.++-.  ..+|.-+.+|+..++.++...     |          .
T Consensus       224 ~~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~  303 (370)
T PF08506_consen  224 SDTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVV  303 (370)
T ss_dssp             --SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HH
T ss_pred             cCCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHH
Confidence            356788899999999888765422   2222223322222  457788899999999887433     1          2


Q ss_pred             HHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChHHHhhcHHHHHHhhcCCCCchHHHHHHHHH
Q 009975          404 EWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVL  472 (521)
Q Consensus       404 ~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~VR~~a~~~l  472 (521)
                      +++.+.++|.|. --.+..+-+|..|+..+..+-..++.+. ...++|.+..+|.+++..|+..|+.++
T Consensus       304 ~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~~~-l~~~~~~l~~~L~~~~~vv~tyAA~~i  370 (370)
T PF08506_consen  304 DFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPKEQ-LLQIFPLLVNHLQSSSYVVHTYAAIAI  370 (370)
T ss_dssp             HHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-HHH-HHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred             HHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCHHH-HHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence            345677788777 3334568899999999999999887654 566999999999999999999998764

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.

>smart00638 LPD_N Lipoprotein N-terminal Domain

Probab=97.24  E-value=0.025  Score=57.72  Aligned_cols=137  Identities=13%  Similarity=0.155  Sum_probs=86.1

Q ss_pred             HHHHHHHHHcCC----CcHHHHHHHHHHHHHHHHHhCHH------HHHhhhHHHHHhhh----cCcchHHHHHHHHHHHH
Q 009975          370 KLGALCMQWLQD----KVYSIRDAAANNLKRLAEEFGPE------WAMQHITPQVLEMI----NNPHYLYRMTILRAISL  435 (521)
Q Consensus       370 ~l~~~l~~~l~d----~~~~vr~~a~~~l~~l~~~~~~~------~~~~~l~~~l~~~l----~~~~~~~r~~a~~~l~~  435 (521)
                      .++..+..++++    +.+.+|..+.-+++.+......+      ...+.+++.+...+    ...+...+..++.+||.
T Consensus       393 ~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN  472 (574)
T smart00638      393 EILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGN  472 (574)
T ss_pred             HHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhc
Confidence            345555555554    46789999999999998755321      12245566655543    34566678889999988


Q ss_pred             hhcccChHHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchHHHHhhHHHHHHHhcCCCCccHHHHHHHHHHHH
Q 009975          436 LAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSI  514 (521)
Q Consensus       436 l~~~~~~~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~~~~~~~~l~~l~~D~~~~vr~~a~~al~~l  514 (521)
                      +..    ......+.|++. .-.+....+|..|+.+|..+... .+....+.+++.+.+  .+.+++||..|..++-..
T Consensus       473 ~g~----~~~i~~l~~~l~-~~~~~~~~iR~~Av~Alr~~a~~-~p~~v~~~l~~i~~n--~~e~~EvRiaA~~~lm~t  543 (574)
T smart00638      473 AGH----PSSIKVLEPYLE-GAEPLSTFIRLAAILALRNLAKR-DPRKVQEVLLPIYLN--RAEPPEVRMAAVLVLMET  543 (574)
T ss_pred             cCC----hhHHHHHHHhcC-CCCCCCHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHcC--CCCChHHHHHHHHHHHhc
Confidence            864    222233444443 22334667999999999988764 233344555555432  456888999998877543

>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised

Probab=97.17  E-value=0.29  Score=48.24  Aligned_cols=303  Identities=15%  Similarity=0.097  Sum_probs=145.5

Q ss_pred             hHHHHHHHHHHHHHHhhcChhHHHHhHHHHHHHhhcCC-CCcchhhhhhhhhhhcCCCCh---HHHHHHHHHHHHhcCCC
Q 009975           34 TCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGE-WFTARVSACGLFHIAYPSAPD---ILKTELRSIYTQLCQDD  109 (521)
Q Consensus        34 ~~vR~~a~~~l~~i~~~~~~~~~~~~l~p~i~~~~~~~-~~~~r~~~~~~~~~~~~~~~~---~~~~~l~~~l~~l~~~~  109 (521)
                      -..|-.|++.+....+.++.+.+ +.++-....+++.+ ..+.|.++..++.....+-..   ..+..++..+..-..++
T Consensus         4 l~~R~~a~~~l~~~i~~~~~~~i-~~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~~~R~~fF~~I~~~~~~~   82 (464)
T PF11864_consen    4 LSERIKAAEELCESIQKYPLSSI-EEIWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSGLMRAEFFRDISDPSNDD   82 (464)
T ss_pred             HHHHHHHHHHHHHHHHhCCchHH-HHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHhcCCCch
Confidence            35677888888888888777554 35666666666644 456788888777776655433   24555555553333333


Q ss_pred             ChHHHHHHHHhHHHHHHhhCc-hhhHHHHHHHHHHhhcCCChhHHHHHHHHHHH-Hhhhc------ChhhhhhhhHHHHH
Q 009975          110 MPMVRRSAASNLGKFAATVEP-AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAA-LGKLL------EPQDCVAHILPVIV  181 (521)
Q Consensus       110 ~~~vr~~a~~~l~~l~~~~~~-~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~-l~~~~------~~~~~~~~l~~~l~  181 (521)
                      +-.-|-.|.   ..+.....+ ..+...+.|.+...+..-...++..-...-.. ..+.-      ..+.....++.++.
T Consensus        83 d~~~~l~aL---~~LT~~Grdi~~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~  159 (464)
T PF11864_consen   83 DFDLRLEAL---IALTDNGRDIDFFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLV  159 (464)
T ss_pred             hHHHHHHHH---HHHHcCCcCchhcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHHHH
Confidence            333443333   333332221 33566777777766654332222111110000 00000      00011122333333


Q ss_pred             HhcCCCChHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcC-CChHHHHHHHHHhHHHHHhh--hCHHHHHHhhhHHH
Q 009975          182 NFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLR-DNEAEVRIAAAGKVTKFCRI--LNPELAIQHILPCV  258 (521)
Q Consensus       182 ~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~--~~~~~~~~~~~~~l  258 (521)
                      ..++-.....                ++.....++..+...+. ......-..++..+..+..+  ++.+. ...++..+
T Consensus       160 nviKfn~~~l----------------~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~s-l~~~i~vL  222 (464)
T PF11864_consen  160 NVIKFNFNYL----------------DEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSES-LSPCIEVL  222 (464)
T ss_pred             HHHhcCCCCC----------------CHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHH-HHHHHHHH
Confidence            3222111100                00111223333333322 22233336777777777663  34433 23344444


Q ss_pred             HHhccCCcHHHHHHHHHHHHccccc-cChHHHHHhHHHHHHHhhc------CCChHHHHHHHHHHHHhhhhhchhhH---
Q 009975          259 KELSSDSSQHVRSALASVIMGMAPL-LGKDATIEQLLPIFLSLLK------DEFPDVRLNIISKLDQVNQVIGIDLL---  328 (521)
Q Consensus       259 ~~~~~d~~~~vr~~~~~~l~~i~~~-~~~~~~~~~l~~~l~~~l~------d~~~~vr~~a~~~l~~~~~~~~~~~~---  328 (521)
                      .....-.  .....+-+.+..++.. .|     ...+..+...+.      .++..+-.+|+..+..+.-..|.+..   
T Consensus       223 Csi~~~~--~l~~~~w~~m~nL~~S~~g-----~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l  295 (464)
T PF11864_consen  223 CSIVNSV--SLCKPSWRTMRNLLKSHLG-----HSAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSL  295 (464)
T ss_pred             hhHhccc--ccchhHHHHHHHHHcCccH-----HHHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCccee
Confidence            3332211  2223333344444422 22     223444455552      23456667888888887655533221   


Q ss_pred             -hh--hHHHHHHHHhcCCChHHHHHHHHHhHHHH-hhhCh
Q 009975          329 -SQ--SLLPAIVELAEDRHWRVRLAIIEYIPLLA-SQLGV  364 (521)
Q Consensus       329 -~~--~~~~~l~~~~~~~~~~vr~~~~~~l~~l~-~~~~~  364 (521)
                       ..  .++|.+...++.++..+-..++..+..+. +.++.
T Consensus       296 ~~~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll~~~~~~  335 (464)
T PF11864_consen  296 PFSPSSVLPSLLNALKSNSPRVDYEILLLINRLLDGKYGR  335 (464)
T ss_pred             cccHHHHHHHHHHHHhCCCCeehHHHHHHHHHHHhHhhhh
Confidence             12  38888888888888777777777777776 44443

>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=97.09  E-value=1  Score=53.26  Aligned_cols=282  Identities=14%  Similarity=0.145  Sum_probs=165.4

Q ss_pred             cchHHHHHHhcCCChHHHHHHHHHhHHHHHhhh----C-HH-----HHHHhhhHHHHHhccCCcHHHHHHHHHHHHcccc
Q 009975          213 MDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRIL----N-PE-----LAIQHILPCVKELSSDSSQHVRSALASVIMGMAP  282 (521)
Q Consensus       213 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~----~-~~-----~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~  282 (521)
                      ..+++.+...+..++.+++.++..++..+....    + ++     ...+.+++-+.+++.++.|.-|...+..++.+..
T Consensus       983 ~i~ldal~~~l~~~~~~~~~~g~~~l~~i~~~~~~~l~~~~~~~~lpi~~~l~~k~~~lCy~~~wy~k~gG~~gI~~l~~ 1062 (3550)
T KOG0889|consen  983 STFLDALVESLSHENSEMRPAGVRALKVIFSTSTLILGSPERAFKLPMFEYLLEKLCHLCYDSTWYAKDGGVNGIKCLIE 1062 (3550)
T ss_pred             HHHHHHHHHHHhccchhhhhhHHHHHHHHHHHHHHhhcCcchhhccchHHHHHHHHHHHhccHhHHHHcCCCceeeeehh
Confidence            468899999999888999999999888776643    2 11     4456788888999999999999998888877776


Q ss_pred             ccChHHH---HHhHHHHHHHhhcCCChHHHH----HHHHHHHHhhh----hhchhh----HhhhHHHHHHHHhcCCChHH
Q 009975          283 LLGKDAT---IEQLLPIFLSLLKDEFPDVRL----NIISKLDQVNQ----VIGIDL----LSQSLLPAIVELAEDRHWRV  347 (521)
Q Consensus       283 ~~~~~~~---~~~l~~~l~~~l~d~~~~vr~----~a~~~l~~~~~----~~~~~~----~~~~~~~~l~~~~~~~~~~v  347 (521)
                      .+.....   ..+++..+...+.|...++-.    .+-..+..+..    ..+.+.    ....++..+..-+.+++..|
T Consensus      1063 ~~~~~~l~d~~~d~~~~l~fvl~d~~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~lv~eL~npN~~V 1142 (3550)
T KOG0889|consen 1063 SMPSLWLLDFQVDILKALFFVLKDTESEVSSLPLDEAKDILMDILRVIFIDELAEEERAKSAMNVFSPLVLELFNPNSDV 1142 (3550)
T ss_pred             hchHHHHHHHHHHHhhhHHHhhcCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcCCchHH
Confidence            6664332   234455555555554333322    12222222211    111111    12344444444556788899


Q ss_pred             HHHHHHHhHHHHhhhChhh------hHHHH-HHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHHHHH-------------
Q 009975          348 RLAIIEYIPLLASQLGVGF------FDDKL-GALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAM-------------  407 (521)
Q Consensus       348 r~~~~~~l~~l~~~~~~~~------~~~~l-~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~-------------  407 (521)
                      |..+.+.+..++...|.+.      +.+.+ .|.+..-+.--...+...-+.++-.. -..|++.+.             
T Consensus      1143 R~~~~~~L~~i~~~s~~~v~~L~~p~K~~ll~p~f~k~lr~~p~~~qig~vd~~~fC-~~l~p~~f~~~~~l~~l~~~~~ 1221 (3550)
T KOG0889|consen 1143 REFSQKLLRLISELSGKSVVKLLEPFKDVLLSPIFKKPLRALPFTIQIGHLDAITFC-LSLGPCLFDFTEELYRLKRFLI 1221 (3550)
T ss_pred             HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhccccccccccCCHHHHhhhHHHHHHH-HHcCCcccCchHHHHHHHHHHH
Confidence            9999999999998887642      11212 23332223332333333322222211 122222110             


Q ss_pred             -------hhhHHHHHhhhcCc----chHHHHHHHHHHHHhhcccCh-----HHHhhcHHHHHHhhcCCCCchHHHHHHHH
Q 009975          408 -------QHITPQVLEMINNP----HYLYRMTILRAISLLAPVMGS-----EITCSRLLPVVINASKDRVPNIKFNVAKV  471 (521)
Q Consensus       408 -------~~l~~~l~~~l~~~----~~~~r~~a~~~l~~l~~~~~~-----~~~~~~il~~l~~~l~d~~~~VR~~a~~~  471 (521)
                             .+.+- +......+    --+.|.+++..++........     ..+.+.++..+++.+.-+.+.+-..+..+
T Consensus      1222 ~La~~~~~~~~~-i~k~~~~k~~~~l~~Lr~~ci~ll~~~~~~~d~~~~~~~~~r~kii~v~fk~l~~~~~Ei~~~~~~~ 1300 (3550)
T KOG0889|consen 1222 ALADAEEDELAT-IQKTSDYKNSSSLVRLRVACIKLLAACMKLSDFRTPQHAELREKIIAVFFKSLYKRSSELIEVALEG 1300 (3550)
T ss_pred             Hhhhhhhhhhhh-hhcccccccccccccchhHHHHHHHHHHhcccccchhhhhhhhHHHHHHHHHHcCChHHHHHHHHHH
Confidence                   00111 11111111    234588888888877653221     22467888899998888888998888888


Q ss_pred             HHHHHhh---hchHHHHhhHHHHHHHhc
Q 009975          472 LQSLIPI---VDQSMVEKTIRPCLVELT  496 (521)
Q Consensus       472 l~~~~~~---~~~~~~~~~~~~~l~~l~  496 (521)
                      +..+...   ++.+..+....|.+.++.
T Consensus      1301 l~~v~~~~~~~~ke~lq~~lrplL~~l~ 1328 (3550)
T KOG0889|consen 1301 LRKVLAQDVKLPKELLQSHLRPLLMNLS 1328 (3550)
T ss_pred             HHhhhhccccccHHHHHhhHHHHHHhhh
Confidence            8776543   456666777778887763

>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]

Probab=97.06  E-value=0.99  Score=52.48  Aligned_cols=493  Identities=15%  Similarity=0.152  Sum_probs=235.3

Q ss_pred             hHHhhhhHHhhh-hcCchhHHHHHHHHHHHHHHhhcChhHHHHhHHHHHHHhhcCCCCcchhhhhhhhhhhcCCCChHHH
Q 009975           17 HAHVLLPPLETL-CTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILK   95 (521)
Q Consensus        17 ~~~~l~~~l~~l-~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~p~i~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~   95 (521)
                      ++..++..+..+ ..+.++.+|......+.   ..+.+...+..++-......++..+..+..+...++.++...+....
T Consensus       525 ~v~~vl~~ll~~aia~~~~~i~~~v~~~l~---~~~~~~laQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl  601 (2341)
T KOG0891|consen  525 VVKEVLSALLTVAIADTDPDIRIRVLSSLN---ERFDAQLAQPDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVL  601 (2341)
T ss_pred             HHHHHHHHHHHHhccCCCcchhhhHHhhhc---cchhhhhcCchhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHh
Confidence            344455555443 34777888887777666   33333333445555555555677777888887777766655444444


Q ss_pred             HHHHHHHHHhcCCC--ChHHHHHH--HHhHHHHHHhhC--chhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcCh
Q 009975           96 TELRSIYTQLCQDD--MPMVRRSA--ASNLGKFAATVE--PAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP  169 (521)
Q Consensus        96 ~~l~~~l~~l~~~~--~~~vr~~a--~~~l~~l~~~~~--~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~  169 (521)
                      ..+......+.+.-  +...|...  ..-+..+.....  -..+...++-.+.....+....+-..+..+++.++..-+.
T Consensus       602 ~~lr~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~~~~~i~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~  681 (2341)
T KOG0891|consen  602 PSLRKTLLELLTELEFSGMARTKEESAKLLCELIISSPVLISPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGE  681 (2341)
T ss_pred             HHHHHHHHHHhchhhhcchHHhHHHHHHHhhHHHHHHHHHHHhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccc
Confidence            44444333333221  11222222  222222221111  0122333444555556777778888888999999887663


Q ss_pred             h--hhhhhhHHHHHHhcCC-CChHHHHHHHHHHHHHHHHhC----CCccccchHHHHHHhcCCC-hHHHHHHHHHhHHHH
Q 009975          170 Q--DCVAHILPVIVNFSQD-KSWRVRYMVANQLYELCEAVG----PEPTRMDLVPAYVRLLRDN-EAEVRIAAAGKVTKF  241 (521)
Q Consensus       170 ~--~~~~~l~~~l~~~~~d-~~~~vR~~~~~~l~~i~~~~~----~~~~~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~l  241 (521)
                      +  ...+..++.+.+.+.| .+..-|.++...++.+...-+    +-...+.++..+...+... ...+|.+++..++..
T Consensus       682 ~~~~~~~~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s~~~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~  761 (2341)
T KOG0891|consen  682 EMVKWVDELFSLIIKMLQDQSSLGKRLAALKALGQLESSTGYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLL  761 (2341)
T ss_pred             hhhhccchHHHHHHHHHHHhhhhhchhHHHHHhhhhhcccceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhh
Confidence            3  2334677777777766 455677778888888876543    3333466777777666543 467888888888854


Q ss_pred             HhhhCHHHHHHhhhHHHHHhccCCcHHH-HHHHHHHHHccccccChHHHHHhHHHHHHHhhcCCChHHH-HHHHHHHHHh
Q 009975          242 CRILNPELAIQHILPCVKELSSDSSQHV-RSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVR-LNIISKLDQV  319 (521)
Q Consensus       242 ~~~~~~~~~~~~~~~~l~~~~~d~~~~v-r~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr-~~a~~~l~~~  319 (521)
                      +..-+...................++.. +..+   ........ .+...-.-+-.+...++|...... ...+.+...+
T Consensus       762 g~~d~~~~~~~~~~~~~~~~~~~~k~~~~~~~~---~~~~~~~~-~e~~p~v~I~~l~~~l~d~~~~~~l~~~~~a~~~i  837 (2341)
T KOG0891|consen  762 GALDPYKHKVTEGTSASKISSEQIKSDIDISLL---ESGVNPSN-DEYYPAVTIHALMGILKDPSLSIHHTAVAQAIMHI  837 (2341)
T ss_pred             cccchhHHHHHhhhhhHhhhhccccccchHHHH---Hhhhhhhh-hhhhhHHHHHHHhhhhhhhhhHHHHHHhhhchhHH
Confidence            4422111100000101222222222211 0100   00001000 111111112234444555432222 2222333333


Q ss_pred             hhhhchh--hHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChhhhHHHHHHHHHHHcCCCc---HHHHHHHHHHH
Q 009975          320 NQVIGID--LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKV---YSIRDAAANNL  394 (521)
Q Consensus       320 ~~~~~~~--~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~---~~vr~~a~~~l  394 (521)
                      ....|.+  .+...++|.+........+..+......+.......... ..+ +++.+.....+.+   -.+.......+
T Consensus       838 ~~~~~~~~~l~l~qv~~~~~~~~r~~~~~~~~f~~~q~~~~~~~~~~h-~~~-~~~~i~~~i~~~~~~~~~l~~~~~~l~  915 (2341)
T KOG0891|consen  838 FQSLGLKCVLFLDQVIPTLIDVMRSCPPNLREFYFQQLTSLVAIVRQH-IRP-YMESIFTLIKDFWPPDTSLQITIISLI  915 (2341)
T ss_pred             HHhhccchhhhHHHHHHHHHHHHHhcCcchhHHHHHhhhhhhhccchh-Hhh-hhhhHHHHHHhhhhhHHHHHHHHHHHH
Confidence            3333322  233566666655544444555554333333222221111 111 2223333333322   22222333333


Q ss_pred             HHHHHHhCHHHHH--hhhHHHHHhhhcCcchHHHHHHHHHHHHhhc-ccChHHHhhcHHHHHHhhcCCC--CchHHHHHH
Q 009975          395 KRLAEEFGPEWAM--QHITPQVLEMINNPHYLYRMTILRAISLLAP-VMGSEITCSRLLPVVINASKDR--VPNIKFNVA  469 (521)
Q Consensus       395 ~~l~~~~~~~~~~--~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~-~~~~~~~~~~il~~l~~~l~d~--~~~VR~~a~  469 (521)
                      ..+...++.++..  ...++.........+...|.........+.. .-+.+.+..-+.|.+++++.+.  ...+|..+.
T Consensus       916 ~~i~~~l~~~f~~~l~~~~~~~l~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~hl~~~~~vkl~~~~~~~~~~~~~~l  995 (2341)
T KOG0891|consen  916 EDIAVALGGEFKKYLPELLPTMLTVLQHDKSKDRVVSRKVLQSLQKFGSNLEQYLHLLLPPIVKLFEDPTVPLSIRKSAL  995 (2341)
T ss_pred             HHHHHHHHhHHHHhhhhhccchheeecccccchHHHHHHhhHHHHhcCccHHhhHhhhccHHHHHHhhhhhhHHHHhhHH
Confidence            4444444443211  1112211111111111222222222222221 1122334456778888888887  666788888


Q ss_pred             HHHHHHHhhhchHHHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHHhhc
Q 009975          470 KVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMM  519 (521)
Q Consensus       470 ~~l~~~~~~~~~~~~~~~~~~~l~~l~~D~~~~vr~~a~~al~~l~~~~~  519 (521)
                      .+.+.+........+...+...+.+.+.-. .+.+......+..+.+..+
T Consensus       996 ~t~~~l~~~~~~~~~~s~i~~~~~r~l~~s-~el~~~~~~~l~~l~~~~~ 1044 (2341)
T KOG0891|consen  996 ITIGRLAQQVDLSEYASRIIHPLVRVLSSS-PELRDVIMDTLIALVKQLG 1044 (2341)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHhhccc-hhHHHHHHHHHHHHHHhhc
Confidence            888888877666656555555555544444 7778777777777766554

>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length

Probab=97.05  E-value=0.2  Score=44.18  Aligned_cols=194  Identities=15%  Similarity=0.178  Sum_probs=117.3

Q ss_pred             HhcCCCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcChhhhhhhhHHHHHH-
Q 009975          104 QLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVN-  182 (521)
Q Consensus       104 ~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~-  182 (521)
                      .+.+..++.+.....+.|..++..-.  ...+.++..+..+...+....+..+.+.+..+.+.-+.  ..+++.+.+.. 
T Consensus         8 ~l~~~~~~~~~~~~L~~L~~l~~~~~--~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r--~f~~L~~~L~~~   83 (234)
T PF12530_consen    8 KLGKISDPELQLPLLEALPSLACHKN--VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDR--HFPFLQPLLLLL   83 (234)
T ss_pred             HhcCCCChHHHHHHHHHHHHHhccCc--cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCch--HHHHHHHHHHHH
Confidence            36667788888888888888776531  45566677777777766666666667777666654211  12333333333 


Q ss_pred             --------hcCCCChHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhc-CCChHHHHHHHHHhHHHHHhhhCHHHHHHh
Q 009975          183 --------FSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLL-RDNEAEVRIAAAGKVTKFCRILNPELAIQH  253 (521)
Q Consensus       183 --------~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~  253 (521)
                              .-.+..++.....+..+..++...+.  ...++++.+..++ ++.++.++..+++++..+++.--- ++.. 
T Consensus        84 ~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~--~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~vv-d~~s-  159 (234)
T PF12530_consen   84 ILRIPSSFSSKDEFWECLISIAASIRDICCSRPD--HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAEVV-DFYS-  159 (234)
T ss_pred             HhhcccccCCCcchHHHHHHHHHHHHHHHHhChh--hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhc-cHHH-
Confidence                    12345667777777788888887666  5678999999999 788889999999999998843211 1111 


Q ss_pred             hhHHH-HHhccCCcHHHHHHHHHHHHcccccc-Ch---HHHHHhHHHHHHHhhcCCC
Q 009975          254 ILPCV-KELSSDSSQHVRSALASVIMGMAPLL-GK---DATIEQLLPIFLSLLKDEF  305 (521)
Q Consensus       254 ~~~~l-~~~~~d~~~~vr~~~~~~l~~i~~~~-~~---~~~~~~l~~~l~~~l~d~~  305 (521)
                      .+..+ .++..+..+.+-...+..+.-+...- +.   +.....++..+-+.....+
T Consensus       160 ~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~  216 (234)
T PF12530_consen  160 AWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSD  216 (234)
T ss_pred             HHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhccccc
Confidence            22222 23344556666665555554433221 11   2233445555555555444

>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length

Probab=97.04  E-value=0.13  Score=45.40  Aligned_cols=166  Identities=13%  Similarity=0.073  Sum_probs=106.3

Q ss_pred             hhhcCchhHHHHHHHHHHHHHHhhcChhHHHHhHHHHHHHhhcCCCCcchhhhhhhhhhhcCCCChHHHHHHHHHHHH--
Q 009975           27 TLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQ--  104 (521)
Q Consensus        27 ~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~p~i~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~~l~~--  104 (521)
                      .+...+++......++.|..++.+-.  .....++..+..+.+.+....+..+.+++..++...+.. ...+.+.+..  
T Consensus         8 ~l~~~~~~~~~~~~L~~L~~l~~~~~--~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~-f~~L~~~L~~~~   84 (234)
T PF12530_consen    8 KLGKISDPELQLPLLEALPSLACHKN--VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRH-FPFLQPLLLLLI   84 (234)
T ss_pred             HhcCCCChHHHHHHHHHHHHHhccCc--cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchH-HHHHHHHHHHHH
Confidence            47778888889999999998888642  333455566666666665555556677777777655433 2344444333  


Q ss_pred             -----hc--CCCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhh-cCCChhHHHHHHHHHHHHhhhc--Chhhhhh
Q 009975          105 -----LC--QDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLT-QDDQDSVRLLAVEGCAALGKLL--EPQDCVA  174 (521)
Q Consensus       105 -----l~--~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~-~d~~~~vr~~a~~~l~~l~~~~--~~~~~~~  174 (521)
                           ..  .+..++...+...++..++...+.  ....+++.+...+ ++.++.++..+++.+..+++.-  .-...+.
T Consensus        85 ~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~--~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~vvd~~s~w~  162 (234)
T PF12530_consen   85 LRIPSSFSSKDEFWECLISIAASIRDICCSRPD--HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAEVVDFYSAWK  162 (234)
T ss_pred             hhcccccCCCcchHHHHHHHHHHHHHHHHhChh--hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhccHHHHHH
Confidence                 11  233556666666778888877664  7788899999998 7888899999999999998541  1112222


Q ss_pred             hhHHHHHHhcCCCChHHHHHHHHHHH
Q 009975          175 HILPVIVNFSQDKSWRVRYMVANQLY  200 (521)
Q Consensus       175 ~l~~~l~~~~~d~~~~vR~~~~~~l~  200 (521)
                      -+.+-   +..+..+.+-+..++.+.
T Consensus       163 vl~~~---l~~~~rp~v~~~l~~l~~  185 (234)
T PF12530_consen  163 VLQKK---LSLDYRPLVLKSLCSLFA  185 (234)
T ss_pred             HHHHh---cCCccchHHHHHHHHHHH
Confidence            33332   345556666555554444

>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised

Probab=97.01  E-value=0.41  Score=47.19  Aligned_cols=142  Identities=13%  Similarity=0.109  Sum_probs=71.1

Q ss_pred             hhhhhHHHHHHhcCCCC-hHHHHHHHHHHHHHHHHhCCCccccc-hHHHHHHhcCC-ChHHHHHHHHHhHHHHHhhhCHH
Q 009975          172 CVAHILPVIVNFSQDKS-WRVRYMVANQLYELCEAVGPEPTRMD-LVPAYVRLLRD-NEAEVRIAAAGKVTKFCRILNPE  248 (521)
Q Consensus       172 ~~~~l~~~l~~~~~d~~-~~vR~~~~~~l~~i~~~~~~~~~~~~-l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~  248 (521)
                      ....++..+...|...+ ...=..+...+..+... +  ..+.. +-+.+.-++.- ...+....+.+++..++...-..
T Consensus       173 ~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y-~--~iP~~sl~~~i~vLCsi~~~~~l~~~~w~~m~nL~~S~~g~  249 (464)
T PF11864_consen  173 EISSLVDQICTICKSTSSEDDIEACLSVLDAIITY-G--DIPSESLSPCIEVLCSIVNSVSLCKPSWRTMRNLLKSHLGH  249 (464)
T ss_pred             HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHc-C--cCChHHHHHHHHHHhhHhcccccchhHHHHHHHHHcCccHH
Confidence            33445555555554322 22224556666655542 1  11222 22222222211 11145556666666666433222


Q ss_pred             HHHHhhhHHHHHhc--c----CCcHHHHHHHHHHHHccccccChHHH----H--HhHHHHHHHhhcCCChHHHHHHHHHH
Q 009975          249 LAIQHILPCVKELS--S----DSSQHVRSALASVIMGMAPLLGKDAT----I--EQLLPIFLSLLKDEFPDVRLNIISKL  316 (521)
Q Consensus       249 ~~~~~~~~~l~~~~--~----d~~~~vr~~~~~~l~~i~~~~~~~~~----~--~~l~~~l~~~l~d~~~~vr~~a~~~l  316 (521)
                          ..+..+...+  .    .++..+-..|+..++.+....|++..    .  ..++|.+...++..++.|-...+..+
T Consensus       250 ----~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~~~~v~~eIl~~i  325 (464)
T PF11864_consen  250 ----SAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSNSPRVDYEILLLI  325 (464)
T ss_pred             ----HHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCCCCeehHHHHHHH
Confidence                2233333434  2    23456666888888876654433221    2  23888999988877776666666666


Q ss_pred             HHhh
Q 009975          317 DQVN  320 (521)
Q Consensus       317 ~~~~  320 (521)
                      ..+.
T Consensus       326 ~~ll  329 (464)
T PF11864_consen  326 NRLL  329 (464)
T ss_pred             HHHH
Confidence            6655

>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]

Probab=96.96  E-value=0.028  Score=58.87  Aligned_cols=171  Identities=11%  Similarity=0.055  Sum_probs=106.2

Q ss_pred             hHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChh--hhHHHHHHHHHHHcCCCc
Q 009975          306 PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG--FFDDKLGALCMQWLQDKV  383 (521)
Q Consensus       306 ~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~  383 (521)
                      ..||..++++|+.+.+......+ ...+..+.++...++|.+|..-+..+-.........  .+...+++.+...+.|.+
T Consensus       143 apVre~caq~L~~~l~~~~~s~~-~~~~~il~q~~~q~~w~ir~Ggll~iky~~air~d~l~~~~~~vl~~~i~~L~ds~  221 (1549)
T KOG0392|consen  143 APVREACAQALGAYLKHMDESLI-KETLDILLQMLRQPNWEIRHGGLLGIKYNVAIRQDLLFQLLNLVLDFVIEGLEDSD  221 (1549)
T ss_pred             hhhHHHHHHHHHHHHHhhhhHhh-HHHHHHHHHHHcCcchhheechHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence            47999999999999888776554 677888888888889999876665554443322111  234567788889999999


Q ss_pred             HHHHHHHHHHHHHHHHHhCHHHH---HhhhHHHHHhhhc---C---cchHHHHHHHHHHHHh-hcccChHH-HhhcHHHH
Q 009975          384 YSIRDAAANNLKRLAEEFGPEWA---MQHITPQVLEMIN---N---PHYLYRMTILRAISLL-APVMGSEI-TCSRLLPV  452 (521)
Q Consensus       384 ~~vr~~a~~~l~~l~~~~~~~~~---~~~l~~~l~~~l~---~---~~~~~r~~a~~~l~~l-~~~~~~~~-~~~~il~~  452 (521)
                      .+||..|+..+..+...+ ....   ...++..+...+.   |   +....|.-..+.+... ...+.... ....+.|-
T Consensus       222 ddv~~~aa~~l~~~~s~~-v~l~~~~i~~lv~~l~~~l~~lddl~~s~~si~~ll~~l~~~~evl~l~~~~n~~~~Lvp~  300 (1549)
T KOG0392|consen  222 DDVRSVAAQFLVPAPSIQ-VKLMVQKIAKLVHTLWSFLLELDDLSSSTASIMHLLDELCIENEVLDLFEQQNLEVGLVPR  300 (1549)
T ss_pred             hHHHHHHHHHhhhhhHHH-HhhhHhHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhhHHHHHHHHHhhhhhccchh
Confidence            999999999887776555 1111   1222333322221   1   1122222111111111 00011111 11356777


Q ss_pred             HHhhcCCCCchHHHHHHHHHHHHHhh
Q 009975          453 VINASKDRVPNIKFNVAKVLQSLIPI  478 (521)
Q Consensus       453 l~~~l~d~~~~VR~~a~~~l~~~~~~  478 (521)
                      ++..+.+....||.++++.+..+.+.
T Consensus       301 ~~p~l~~~i~sv~~a~l~~l~~lle~  326 (1549)
T KOG0392|consen  301 LWPFLRHTISSVRRAALETLAMLLEA  326 (1549)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            88888888889999999999888764

>KOG2933 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.92  E-value=0.05  Score=48.18  Aligned_cols=138  Identities=12%  Similarity=0.161  Sum_probs=74.7

Q ss_pred             HHhcCCChHHHHHHHHHhHHHHhhhChhhhH---HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHHHH--HhhhHH
Q 009975          338 ELAEDRHWRVRLAIIEYIPLLASQLGVGFFD---DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWA--MQHITP  412 (521)
Q Consensus       338 ~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~---~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~--~~~l~~  412 (521)
                      ..+.+.+|......+..+..++.+... ...   ..++..+.+-+++....|-.+|+.+++.+...++....  .+.++-
T Consensus        95 ~~L~s~dW~~~vdgLn~irrLs~fh~e-~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~ld~lv~  173 (334)
T KOG2933|consen   95 KKLSSDDWEDKVDGLNSIRRLSEFHPE-SLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQELDDLVT  173 (334)
T ss_pred             HHhchHHHHHHhhhHHHHHHHHhhhHH-HHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334556666666666666666554432 122   22333444556666667777777777777666654321  122222


Q ss_pred             HHHhhhcCcchHHHHHHHHHHHHhhcccChHHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhc
Q 009975          413 QVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD  480 (521)
Q Consensus       413 ~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~  480 (521)
                      .|..-...+|.-+|+.|-.++..+..+..+.    .+++.+...+...++.+|..++.+.......+|
T Consensus       174 ~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~----~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl~  237 (334)
T KOG2933|consen  174 QLLHKASQDNRFVREDAEKALVAMVNHVTPQ----KLLRKLIPILQHSNPRVRAKAALCFSRCVIRLG  237 (334)
T ss_pred             HHHhhhcccchHHHHHHHHHHHHHHhccChH----HHHHHHHHHHhhhchhhhhhhhccccccceecc
Confidence            2222233445666777777777666654433    344555555566666666666666655554443

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.89  E-value=0.59  Score=47.11  Aligned_cols=357  Identities=13%  Similarity=0.134  Sum_probs=194.7

Q ss_pred             HHHHHHHHH-HhcCCCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHhhhcChhhh
Q 009975           95 KTELRSIYT-QLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDD-QDSVRLLAVEGCAALGKLLEPQDC  172 (521)
Q Consensus        95 ~~~l~~~l~-~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~-~~~vr~~a~~~l~~l~~~~~~~~~  172 (521)
                      ..+-++.++ ..-+..-++=|+.|+.+|..+++.+..+.....+-|++..+-.|- ++..-..+.+++..+..+-..   
T Consensus        20 ~aETI~kLcDRvessTL~eDRR~A~rgLKa~srkYR~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~---   96 (970)
T KOG0946|consen   20 AAETIEKLCDRVESSTLLEDRRDAVRGLKAFSRKYREEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDS---   96 (970)
T ss_pred             HHhHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcc---
Confidence            344444444 333445577899999999999998877766777777777777775 456667777777766554211   


Q ss_pred             hhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHH---
Q 009975          173 VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPEL---  249 (521)
Q Consensus       173 ~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~---  249 (521)
                           |.    ..|.+. .-.....++.   ..+-   ..++.+..++..+...+-.||..++..+..+....|++.   
T Consensus        97 -----~~----v~dds~-qsdd~g~~ia---e~fi---k~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~  160 (970)
T KOG0946|consen   97 -----PE----VMDDST-QSDDLGLWIA---EQFI---KNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDA  160 (970)
T ss_pred             -----hh----hcccch-hhhHHHHHHH---HHHH---cCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHH
Confidence                 00    111111 1111111221   1111   124567777777777778888888888888888777652   


Q ss_pred             --HHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccCh---HHHHHhHHHHHHHhhcCC----ChHHHHHHHHHHHHhh
Q 009975          250 --AIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK---DATIEQLLPIFLSLLKDE----FPDVRLNIISKLDQVN  320 (521)
Q Consensus       250 --~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~---~~~~~~l~~~l~~~l~d~----~~~vr~~a~~~l~~~~  320 (521)
                        ..+.-+..+..++.|....+|..++-.+..+.+..+.   -...+.++..++.++..+    ..-|...++..+..+.
T Consensus       161 ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLL  240 (970)
T KOG0946|consen  161 LLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLL  240 (970)
T ss_pred             HHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHH
Confidence              1223345566777788888888888777777654432   223455556666665543    2356666666666665


Q ss_pred             hhhc-hh-hH-hhhHHHHHHHHh-----cCC---ChHHH-H-HHHHHhHHHHhhhCh------------hhhHHHHHHHH
Q 009975          321 QVIG-ID-LL-SQSLLPAIVELA-----EDR---HWRVR-L-AIIEYIPLLASQLGV------------GFFDDKLGALC  375 (521)
Q Consensus       321 ~~~~-~~-~~-~~~~~~~l~~~~-----~~~---~~~vr-~-~~~~~l~~l~~~~~~------------~~~~~~l~~~l  375 (521)
                      +.=. .. .+ ....+|.+..++     .|.   .|.-. . .+..++..+-..+++            ......++..+
T Consensus       241 K~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~L  320 (970)
T KOG0946|consen  241 KNNISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVL  320 (970)
T ss_pred             hhCcchhhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHH
Confidence            4321 11 11 134566666433     332   45432 2 222223222222221            12233455555


Q ss_pred             HHHcCC--CcHHHHHHHHHHHHHHHHHhC--HHHHH-----------hhhHHHHHhhhcCc-chHHHHHHHHHHHHhhcc
Q 009975          376 MQWLQD--KVYSIRDAAANNLKRLAEEFG--PEWAM-----------QHITPQVLEMINNP-HYLYRMTILRAISLLAPV  439 (521)
Q Consensus       376 ~~~l~d--~~~~vr~~a~~~l~~l~~~~~--~~~~~-----------~~l~~~l~~~l~~~-~~~~r~~a~~~l~~l~~~  439 (521)
                      ...+-.  -..+|+.-++-+++.++....  .+.+.           ..++-.++.+.++. .+..|.+...++..+.- 
T Consensus       321 c~il~~~~vp~dIltesiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~-  399 (970)
T KOG0946|consen  321 CTILMHPGVPADILTESIITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLY-  399 (970)
T ss_pred             HHHHcCCCCcHhHHHHHHHHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHh-
Confidence            555443  456788877777777764321  11111           22333445555554 57899999999988774 


Q ss_pred             cChHHHhhcHHHHHHhhcCCCCc-hHHHHHHHHH
Q 009975          440 MGSEITCSRLLPVVINASKDRVP-NIKFNVAKVL  472 (521)
Q Consensus       440 ~~~~~~~~~il~~l~~~l~d~~~-~VR~~a~~~l  472 (521)
                       ...+-...++..++....+... .+....+.+.
T Consensus       400 -dN~~gq~~~l~tllp~~~nst~Nsl~ag~l~~~  432 (970)
T KOG0946|consen  400 -DNDDGQRKFLKTLLPSSTNSTSNSLSAGQLLLV  432 (970)
T ss_pred             -cchhhHHHHHHHHhhhhccccccchhhhhHHHH
Confidence             1222233444444444444333 4444444433

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=96.76  E-value=0.024  Score=41.15  Aligned_cols=83  Identities=24%  Similarity=0.291  Sum_probs=63.6

Q ss_pred             HHHHHHhcCCCChHHHHHHHHhHHHHHHhhC-chhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcChhhhhhhhH
Q 009975           99 RSIYTQLCQDDMPMVRRSAASNLGKFAATVE-PAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHIL  177 (521)
Q Consensus        99 ~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~-~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~  177 (521)
                      +......++|+.+-||-.+...|..++..-. .....+.++.++...++|+++.|-..|++.+..++...+.     .++
T Consensus         5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~-----~vl   79 (92)
T PF10363_consen    5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD-----EVL   79 (92)
T ss_pred             HHHHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH-----HHH
Confidence            3445556688888899999999999887766 4456678888999999999999999999999999987643     355


Q ss_pred             HHHHHhcCC
Q 009975          178 PVIVNFSQD  186 (521)
Q Consensus       178 ~~l~~~~~d  186 (521)
                      |.+.+...|
T Consensus        80 ~~L~~~y~~   88 (92)
T PF10363_consen   80 PILLDEYAD   88 (92)
T ss_pred             HHHHHHHhC
Confidence            655554433

>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]

Probab=96.76  E-value=0.5  Score=49.82  Aligned_cols=130  Identities=15%  Similarity=0.114  Sum_probs=93.6

Q ss_pred             HHHcCCCcHHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcc---c-ChHHHhhcHHH
Q 009975          376 MQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPV---M-GSEITCSRLLP  451 (521)
Q Consensus       376 ~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~---~-~~~~~~~~il~  451 (521)
                      ++...|-.+++|.-++..||.++..+...+.....+..+-..+.|.+-.||..++.++..+...   . +-+.|.+.+-.
T Consensus       293 VHRYRDV~~~IRaiCiqeLgiWi~~yP~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK~  372 (1048)
T KOG2011|consen  293 VHRYRDVDPDIRAICIQELGIWIKSYPEIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFKD  372 (1048)
T ss_pred             eeecccCchHHHHHHHHHHHHHHHhccHHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence            4446789999999999999999999988888888899999999999999999999999999875   2 22446677777


Q ss_pred             HHHhhc-CCCCchHHHHHHHHHHHHHh--hhchHHHHhhHHHHHHHhcCCCCccHHHHHHHH
Q 009975          452 VVINAS-KDRVPNIKFNVAKVLQSLIP--IVDQSMVEKTIRPCLVELTEDPDVDVRFFATQA  510 (521)
Q Consensus       452 ~l~~~l-~d~~~~VR~~a~~~l~~~~~--~~~~~~~~~~~~~~l~~l~~D~~~~vr~~a~~a  510 (521)
                      .++.+. .|-+..||...+..+-....  .+..+    .+. .+..+.-|.++.++..|..-
T Consensus       373 RIVeMadrd~~~~Vrav~L~~~~~~~~~g~L~d~----di~-~Vy~Li~d~~r~~~~aa~~f  429 (1048)
T KOG2011|consen  373 RIVEMADRDRNVSVRAVGLVLCLLLSSSGLLSDK----DIL-IVYSLIYDSNRRVAVAAGEF  429 (1048)
T ss_pred             HHHHHHhhhcchhHHHHHHHHHHHHhcccccChh----HHH-HHHHHHhccCcchHHHHHHH
Confidence            777776 66677788777666655432  12222    222 23445566676666655443

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.66  E-value=0.18  Score=45.95  Aligned_cols=173  Identities=14%  Similarity=0.068  Sum_probs=104.1

Q ss_pred             CcchhhhhhhhhhhcCCCChH---HHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCchh---hHH-HHHHHHHHhh
Q 009975           73 FTARVSACGLFHIAYPSAPDI---LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAH---LKT-DIMSIFEDLT  145 (521)
Q Consensus        73 ~~~r~~~~~~~~~~~~~~~~~---~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~---~~~-~l~~~l~~l~  145 (521)
                      ..-+..+...+....+..+..   .....+..+..++++.++.+|..|+..+++.++..+...   ... .+-.++..+.
T Consensus        97 le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls  176 (342)
T KOG2160|consen   97 LEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILS  176 (342)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHc
Confidence            344455554444444333321   122233444448889999999999999999998876521   222 3334444455


Q ss_pred             cCCChhHHHHHHHHHHHHhhhcChhh---hhhhhHHHHHHhcCC--CChHHHHHHHHHHHHHHHHhCC--CccccchHHH
Q 009975          146 QDDQDSVRLLAVEGCAALGKLLEPQD---CVAHILPVIVNFSQD--KSWRVRYMVANQLYELCEAVGP--EPTRMDLVPA  218 (521)
Q Consensus       146 ~d~~~~vr~~a~~~l~~l~~~~~~~~---~~~~l~~~l~~~~~d--~~~~vR~~~~~~l~~i~~~~~~--~~~~~~l~~~  218 (521)
                      .+.+..+|..|..+++.+..+..+..   ..-.-+..+...+++  .+.+.+..++..++.+......  +......++.
T Consensus       177 ~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f~~  256 (342)
T KOG2160|consen  177 SDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGFQR  256 (342)
T ss_pred             cCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhH
Confidence            66677889999999999988865531   112234556666666  6677778888888877764332  1222233333


Q ss_pred             -HHHhcCCChHHHHHHHHHhHHHHHhhh
Q 009975          219 -YVRLLRDNEAEVRIAAAGKVTKFCRIL  245 (521)
Q Consensus       219 -l~~~l~d~~~~vr~~a~~~l~~l~~~~  245 (521)
                       ...+....+++++.+++.++-......
T Consensus       257 ~~~~l~~~l~~~~~e~~l~~~l~~l~~~  284 (342)
T KOG2160|consen  257 VLENLISSLDFEVNEAALTALLSLLSEL  284 (342)
T ss_pred             HHHHHhhccchhhhHHHHHHHHHHHHHH
Confidence             334445566778888877766655543

>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter

Probab=96.59  E-value=0.066  Score=44.13  Aligned_cols=116  Identities=17%  Similarity=0.144  Sum_probs=83.9

Q ss_pred             HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHHH---HHhhhHHHHHhhhcCcchHHHHHHHHHHHHh---hcccCh
Q 009975          369 DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW---AMQHITPQVLEMINNPHYLYRMTILRAISLL---APVMGS  442 (521)
Q Consensus       369 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~---~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l---~~~~~~  442 (521)
                      +..+|+++..+.+.+..-|-.|...+..+...-|.+.   ...++++.+...++..+..+..+++.++..+   .+..|.
T Consensus        37 ~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG~  116 (183)
T PF10274_consen   37 HHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVGE  116 (183)
T ss_pred             hhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhH
Confidence            5688999999999888888888888888887733332   2466777778889999999999999999999   666665


Q ss_pred             HH--HhhcHHHHHHhh------cC-----CCCchHHHHHHHHHHHHHhhhchHHH
Q 009975          443 EI--TCSRLLPVVINA------SK-----DRVPNIKFNVAKVLQSLIPIVDQSMV  484 (521)
Q Consensus       443 ~~--~~~~il~~l~~~------l~-----d~~~~VR~~a~~~l~~~~~~~~~~~~  484 (521)
                      .-  +..+++|.+.-.      +.     ....+++.-...+|..+-...|++.+
T Consensus       117 aLvPyyrqLLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~GG~dA~  171 (183)
T PF10274_consen  117 ALVPYYRQLLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERNGGPDAF  171 (183)
T ss_pred             HHHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHhcChhHH
Confidence            42  456777766521      11     23456777777777777776666654

The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.

>KOG1822 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.59  E-value=1.7  Score=48.48  Aligned_cols=284  Identities=16%  Similarity=0.111  Sum_probs=160.9

Q ss_pred             HHHHHHHHHHHHHHhhcChhHHHHhHHHHHHHhhcCCCCc----chhhhh------hhhhhhcCC------CChHHHHHH
Q 009975           35 CVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFT----ARVSAC------GLFHIAYPS------APDILKTEL   98 (521)
Q Consensus        35 ~vR~~a~~~l~~i~~~~~~~~~~~~l~p~i~~~~~~~~~~----~r~~~~------~~~~~~~~~------~~~~~~~~l   98 (521)
                      .+-.+++..++.++.+++++.- ..++..+.+.+......    ++..+.      ..++.+...      +++.++..-
T Consensus       799 s~Idta~~lfg~vfp~v~~k~~-~~ile~~~esi~~sk~~r~qsV~~~a~t~~al~s~lk~l~e~~~~~~lg~e~v~~~~  877 (2067)
T KOG1822|consen  799 SLIDTAVSLFGSVFPHVNNKIR-LSILEHFPESIKQSKSARQQSVQVNAVTWQALLSALKYLAEFKGATSLGPEEVRSSA  877 (2067)
T ss_pred             HHHHHHHHHHHHhccCccHHHH-HHHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHHHhcccccccCHHHHHHHH
Confidence            4567788888888888887643 33344443433322212    111111      111211111      223344445


Q ss_pred             HHHHHHhcCCCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcC-CChhHHHHHHHHHHHHhhhcChhhhhhh--
Q 009975           99 RSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQD-DQDSVRLLAVEGCAALGKLLEPQDCVAH--  175 (521)
Q Consensus        99 ~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~--  175 (521)
                      +.++...+...+|..|-++.++++.++...+...+...+...+..-+.+ .++..|..-.-+++.+-++.+.-...++  
T Consensus       878 ~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~qhl~  957 (2067)
T KOG1822|consen  878 LTLIVNSLINPNPKLRCAAAEALARLAQVVGSAPFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQHLN  957 (2067)
T ss_pred             HHHHhhhhccCChHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCchhcc
Confidence            5566677778899999999999999999998877666666655554444 4556677778888888887665333333  


Q ss_pred             -hHHHHHHhcCCC-ChHHHHHHHHHHHHHHHHhCCCccc---cchHHHHHHhcCCCh--HHHHHHHHHhHH------HHH
Q 009975          176 -ILPVIVNFSQDK-SWRVRYMVANQLYELCEAVGPEPTR---MDLVPAYVRLLRDNE--AEVRIAAAGKVT------KFC  242 (521)
Q Consensus       176 -l~~~l~~~~~d~-~~~vR~~~~~~l~~i~~~~~~~~~~---~~l~~~l~~~l~d~~--~~vr~~a~~~l~------~l~  242 (521)
                       -+.++..+.+|+ +|.|+..+..++..+....++....   ..+.-...-++.++.  .+|+..--+++.      .+.
T Consensus       958 t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~~~~ev~q~~~R~~~~~~~~~ali 1037 (2067)
T KOG1822|consen  958 TSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPTSHVEVHQCYNRCFNGDDDEDALI 1037 (2067)
T ss_pred             cHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCcchhhhhhhhccccccchhHHHHH
Confidence             344677777775 5599999999998887765543311   112222222333333  334443333333      444


Q ss_pred             hhhCHH----H-------HHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccChHHHHHhHHHHHHHhhcCCChHHHHH
Q 009975          243 RILNPE----L-------AIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLN  311 (521)
Q Consensus       243 ~~~~~~----~-------~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~  311 (521)
                      ..+|++    .       .....+-...-+...++..+..+++.++.++--.-++..-.+.+++.+..++....--.|..
T Consensus      1038 ttlgpeL~~N~~~d~t~~~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr~~n~~~lV~~L~~~l~s~~~i~r~~ 1117 (2067)
T KOG1822|consen 1038 TTLGPELGPNGDKDSTSTLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPRHVNLDSLVLQLCSLLSSSYLILRRA 1117 (2067)
T ss_pred             HhcccccCCCCcccchhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcchhccHHHHHHHHHHHhcchhhhhhhh
Confidence            444332    1       00111111111224446667777777777765444555556677888887777665555555


Q ss_pred             HHHHHHHh
Q 009975          312 IISKLDQV  319 (521)
Q Consensus       312 a~~~l~~~  319 (521)
                      ...++..+
T Consensus      1118 ~~~clrql 1125 (2067)
T KOG1822|consen 1118 SFSCLRQL 1125 (2067)
T ss_pred             HHhhhhHH
Confidence            55555443

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=96.54  E-value=0.048  Score=39.58  Aligned_cols=81  Identities=19%  Similarity=0.118  Sum_probs=56.4

Q ss_pred             HHHHhcCCChHHHHHHHHHhHHHHhhhC-hhhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHHHHHhhhHHHH
Q 009975          336 IVELAEDRHWRVRLAIIEYIPLLASQLG-VGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQV  414 (521)
Q Consensus       336 l~~~~~~~~~~vr~~~~~~l~~l~~~~~-~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l  414 (521)
                      ....+.|+...+|..++..+..+.+.-. .....+.++.++...++|+++-|-.+|++++..++...+     +.++|.|
T Consensus         8 al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p-----~~vl~~L   82 (92)
T PF10363_consen    8 ALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHP-----DEVLPIL   82 (92)
T ss_pred             HHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHCh-----HHHHHHH
Confidence            3344567777777777777777776655 333456778888888888888888888888888886653     3466666


Q ss_pred             HhhhcCc
Q 009975          415 LEMINNP  421 (521)
Q Consensus       415 ~~~l~~~  421 (521)
                      .+...+.
T Consensus        83 ~~~y~~~   89 (92)
T PF10363_consen   83 LDEYADP   89 (92)
T ss_pred             HHHHhCc
Confidence            6655443

>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=96.51  E-value=1  Score=44.82  Aligned_cols=109  Identities=17%  Similarity=0.172  Sum_probs=87.1

Q ss_pred             HHHHHHhhcCCChhHHHHHHHHHHHHhhhcChhh--------hhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCC
Q 009975          138 MSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQD--------CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE  209 (521)
Q Consensus       138 ~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~--------~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~  209 (521)
                      +..+.++++++....|+..+++++++...+..+.        ..+.++.++.+-+.|.+|.+|..+.+.+..+.+.-..-
T Consensus       301 ~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~  380 (1128)
T COG5098         301 YEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKT  380 (1128)
T ss_pred             HHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcccc
Confidence            4456778888899999999999999988765432        23447778888899999999999999999888643322


Q ss_pred             -ccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhC
Q 009975          210 -PTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN  246 (521)
Q Consensus       210 -~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~  246 (521)
                       ....++.....+.++|....||+.|++.++.+....+
T Consensus       381 ~~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~~HP  418 (1128)
T COG5098         381 VGRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLMRHP  418 (1128)
T ss_pred             cchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCC
Confidence             2235788999999999999999999999988776544

>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]

Probab=96.47  E-value=0.47  Score=50.42  Aligned_cols=169  Identities=18%  Similarity=0.240  Sum_probs=103.4

Q ss_pred             HHHHHHhHHHHHhhhCHHHH--HHhhhHHHHH----hccCCcHHHHHHHHHHHHccccccChHHH-HHhHHHHHHHhhcC
Q 009975          231 RIAAAGKVTKFCRILNPELA--IQHILPCVKE----LSSDSSQHVRSALASVIMGMAPLLGKDAT-IEQLLPIFLSLLKD  303 (521)
Q Consensus       231 r~~a~~~l~~l~~~~~~~~~--~~~~~~~l~~----~~~d~~~~vr~~~~~~l~~i~~~~~~~~~-~~~l~~~l~~~l~d  303 (521)
                      |..|--+|..+++..|..-+  ...+...+..    ..+..+..+  ...+.+..++..++.... .-..+|.+..+...
T Consensus       750 rrgael~L~~l~~~fg~sl~~klp~l~~~L~~~L~~~~~~~d~~~--~s~~vf~s~~~~m~s~l~~~~~~l~~l~~~~~s  827 (1549)
T KOG0392|consen  750 RRGAELFLKILSKMFGGSLAAKLPHLWDFLLKALSGLIDGNDEFL--SSFEVFNSLAPLMHSFLHPLGSLLPRLFFFVRS  827 (1549)
T ss_pred             hhhHHHHHHHHHHHhhHHHHHhcchHHHHHHHhhhccCCCCcchh--hhHHHHHHHHHhhhhhhhhhhhhhhHHHHhccc
Confidence            77788888888888877532  2233333322    222121100  011111111212222110 12467888889999


Q ss_pred             CChHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHhcCCChHHHHHHHHHh-HHHHhhh--ChhhhHHHHHHHHHHHcC
Q 009975          304 EFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYI-PLLASQL--GVGFFDDKLGALCMQWLQ  380 (521)
Q Consensus       304 ~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l-~~l~~~~--~~~~~~~~l~~~l~~~l~  380 (521)
                      ....+|.+++.+++.+.+....+.. ..++..+.-+.++.+.-+|...+..+ ..+....  +-..+...++|.++..+.
T Consensus       828 ~~~a~r~~~ar~i~~~~k~~~~e~m-~~v~~~~~~ll~~~~~~~~r~~a~e~~~~l~~~l~~~l~~~~~Llv~pllr~ms  906 (1549)
T KOG0392|consen  828 IHIAVRYAAARCIGTMFKSATRETM-ATVINGFLPLLGDLDKFVRRQGADELIELLDAVLMVGLVPYNPLLVVPLLRRMS  906 (1549)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhccchhhHhhhhhHHHHHHHHHHhhcccccccceeehhhhhcccc
Confidence            9999999999999999876555443 34455555556666656665554443 3333332  223556678899999999


Q ss_pred             CCcHHHHHHHHHHHHHHHHHhC
Q 009975          381 DKVYSIRDAAANNLKRLAEEFG  402 (521)
Q Consensus       381 d~~~~vr~~a~~~l~~l~~~~~  402 (521)
                      |....||.++-+++..+....+
T Consensus       907 d~~d~vR~aat~~fa~lip~~~  928 (1549)
T KOG0392|consen  907 DQIDSVREAATKVFAKLIPLLP  928 (1549)
T ss_pred             cchHHHHHHHHHHHHHHhcccc
Confidence            9999999999999999987663

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=96.45  E-value=0.85  Score=43.20  Aligned_cols=230  Identities=13%  Similarity=0.061  Sum_probs=133.7

Q ss_pred             hHHhhhhHHhhhhcCchhHHHHHHHHHHHHHHhhcCh-hHHHHhHHHH-H-HHhhcC-CCCcchhhhhhhhhhhcCC--C
Q 009975           17 HAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRE-SDLVDWYIPL-V-KRLAAG-EWFTARVSACGLFHIAYPS--A   90 (521)
Q Consensus        17 ~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~-~~~~~~l~p~-i-~~~~~~-~~~~~r~~~~~~~~~~~~~--~   90 (521)
                      .+..+.+.++.++-++++.||.++.+.+..++..-.. +.+.+.=++. + ..+..+ +....|..|+.++..+...  .
T Consensus        22 ~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~  101 (371)
T PF14664_consen   22 VLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKG  101 (371)
T ss_pred             hHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCC
Confidence            3445666666544455599999999999887775322 2222222222 2 333333 3456788898888776644  3


Q ss_pred             ChHHHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcChh
Q 009975           91 PDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ  170 (521)
Q Consensus        91 ~~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~  170 (521)
                      +...-..+...+..+..+++...|..+.+.|.+++-..++-.....-+..+.+.+.|.........+.++-.+...-...
T Consensus       102 ~~~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~tR  181 (371)
T PF14664_consen  102 PKEIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSPRTR  181 (371)
T ss_pred             cccCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcchh
Confidence            43445567777778888888899999999999988665543333333444444445444445555555555554432111


Q ss_pred             h------hhhhhHHHHHHh----cCCCCh-HHHHHHHHHHHHHHHHhCCCcc----ccchHHHHHHhcCCChHHHHHHHH
Q 009975          171 D------CVAHILPVIVNF----SQDKSW-RVRYMVANQLYELCEAVGPEPT----RMDLVPAYVRLLRDNEAEVRIAAA  235 (521)
Q Consensus       171 ~------~~~~l~~~l~~~----~~d~~~-~vR~~~~~~l~~i~~~~~~~~~----~~~l~~~l~~~l~d~~~~vr~~a~  235 (521)
                      .      ....++..+...    .++... +.-+.+..++..+.+.+.+-..    ...-+.-++..+.-+.+++|...+
T Consensus       182 ~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~Il  261 (371)
T PF14664_consen  182 KYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKAIL  261 (371)
T ss_pred             hhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHHHHH
Confidence            1      111233333332    122221 2334455667777776654221    114566677788888899999999


Q ss_pred             HhHHHHHhhhC
Q 009975          236 GKVTKFCRILN  246 (521)
Q Consensus       236 ~~l~~l~~~~~  246 (521)
                      ..+-.+...-.
T Consensus       262 dll~dllrik~  272 (371)
T PF14664_consen  262 DLLFDLLRIKP  272 (371)
T ss_pred             HHHHHHHCCCC
Confidence            98888777543

>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []

Probab=96.44  E-value=0.79  Score=44.44  Aligned_cols=215  Identities=13%  Similarity=0.162  Sum_probs=107.1

Q ss_pred             ChhHHHHHHHHHHHHhhhcCh--hhhhhhhHHHHHHhcCC-CChHHHHHHHHHHHHHHHHhCCC------ccccchHHHH
Q 009975          149 QDSVRLLAVEGCAALGKLLEP--QDCVAHILPVIVNFSQD-KSWRVRYMVANQLYELCEAVGPE------PTRMDLVPAY  219 (521)
Q Consensus       149 ~~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~~~d-~~~~vR~~~~~~l~~i~~~~~~~------~~~~~l~~~l  219 (521)
                      |+.+-+...+++....+.+.+  ....+++..++...+++ .+|.--....++++.+.+...+.      ...+.++|.+
T Consensus        43 NeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~~~~~v~~~E~~L~P~f  122 (435)
T PF03378_consen   43 NEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEADPEAVSQFEEALFPPF  122 (435)
T ss_dssp             -HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GGGHH---HHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCCChhHHHHHHHHHHHHH
Confidence            444444444544444433322  12344455555555555 56677777888888777765432      1245688888


Q ss_pred             HHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhhhHHHHHhccCCcHHHHH---HHHHHHHccccccCh----HHHHHh
Q 009975          220 VRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRS---ALASVIMGMAPLLGK----DATIEQ  292 (521)
Q Consensus       220 ~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~---~~~~~l~~i~~~~~~----~~~~~~  292 (521)
                      ...++.+-.+.--.+...++.+.+..+.....+.+...+..++...-|.-|.   +++..+..+.+.-+.    ....+.
T Consensus       123 ~~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~gniPalvrLL~a~i~k~~~~i~~~~~l~~  202 (435)
T PF03378_consen  123 QEILQQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRGNIPALVRLLQAYIKKDPSFIVANNQLEP  202 (435)
T ss_dssp             HHHHHTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTTTHHHHHHHHHHHHHHHGGG----S-CHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCCCcCcHHHHHHHHHHhCchhhcchhhHHH
Confidence            8888766555666677777777777663333333344444444444443221   122222222221111    112345


Q ss_pred             HHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchhhHh---hhHHHHHHH-HhcCCChHHHHHHHHHhHHHHhhhChh
Q 009975          293 LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLS---QSLLPAIVE-LAEDRHWRVRLAIIEYIPLLASQLGVG  365 (521)
Q Consensus       293 l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~---~~~~~~l~~-~~~~~~~~vr~~~~~~l~~l~~~~~~~  365 (521)
                      ++.++.+++.....+  ..+..-+..+...++.+.+.   +.++-.+.. +-+.+.++.+..++..++.++-..|.+
T Consensus       203 iLgvFQkLi~sk~~D--~~gF~LL~~iv~~~p~~~l~~yl~~I~~lll~RLq~skT~kf~~~fv~F~~~~~~~~g~~  277 (435)
T PF03378_consen  203 ILGVFQKLIASKAND--HYGFDLLESIVENLPPEALEPYLKQIFTLLLTRLQSSKTEKFVKRFVVFLSLFAIKYGPD  277 (435)
T ss_dssp             HHHHHHHHHT-TTCH--HHHHHHHHHHHHHS-HHHHGGGHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH-HH
T ss_pred             HHHHHHHHHCCCCcc--hHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHcCHH
Confidence            677777888766433  33556677777777665542   223333322 334566666666666666665555544

CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.

>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]

Probab=96.39  E-value=1.3  Score=44.61  Aligned_cols=269  Identities=15%  Similarity=0.166  Sum_probs=138.3

Q ss_pred             HHHHHHHHhHHHHHhhhCHHHHHHhhhHHH---HHhccCCcHHHHHHHHHHHHccccccChHH------------HHHhH
Q 009975          229 EVRIAAAGKVTKFCRILNPELAIQHILPCV---KELSSDSSQHVRSALASVIMGMAPLLGKDA------------TIEQL  293 (521)
Q Consensus       229 ~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l---~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~------------~~~~l  293 (521)
                      ++|+---.-+..+ ..++++-+...+-..+   ....+..+|..-+.++..+-.+++.+....            ....+
T Consensus       414 e~RkkLk~fqdti-~~idpsl~l~~Ir~slS~al~ns~e~swqevE~Aiylly~lgE~l~~~~~~~nsgd~s~~~vl~~~  492 (980)
T KOG2021|consen  414 EVRKKLKNFQDTI-VVIDPSLFLNNIRQSLSAALMNSKEESWQEVELAIYLLYNLGECLKNNYFGLNSGDISTSQVLFLN  492 (980)
T ss_pred             HHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhccccccccccCccccHHHHHHHH
Confidence            4565433333333 3345655444444444   334566788888888888877776553221            11223


Q ss_pred             HHHHH--HhhcCCChHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHh------cCCChHHHHHHHHHhHHHHhhhChh
Q 009975          294 LPIFL--SLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELA------EDRHWRVRLAIIEYIPLLASQLGVG  365 (521)
Q Consensus       294 ~~~l~--~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~------~~~~~~vr~~~~~~l~~l~~~~~~~  365 (521)
                      .+.+.  ..+..+++-|..--.+.+-+..+.+..+   ..-+|.+....      .+.+..||..+.-.+..+.+.+.+.
T Consensus       493 ~~ll~tsqv~~h~h~lVqLlfmE~ivRY~kff~~e---sq~ip~vL~aFld~rglhn~ne~Vr~RawYLF~RfVKlLkkq  569 (980)
T KOG2021|consen  493 ELLLMTSQVLAHDHELVQLLFMELIVRYNKFFSTE---SQKIPLVLNAFLDSRGLHNKNENVRLRAWYLFTRFVKLLKKQ  569 (980)
T ss_pred             HHHHHHcccccCCchHHHHHHHHHHHHHHHHHhcc---hhhhHHHHHHHccchhccccccccchHHHHHHHHHHHHHHHH
Confidence            33332  2344556667666666666555444433   34566655533      4567889988888888888887654


Q ss_pred             h--hHHHHHHHHHHHcCCC----c--------HHHHHHHHHHHHHHHHHh--CHH------------HHHhhhHHHH-Hh
Q 009975          366 F--FDDKLGALCMQWLQDK----V--------YSIRDAAANNLKRLAEEF--GPE------------WAMQHITPQV-LE  416 (521)
Q Consensus       366 ~--~~~~l~~~l~~~l~d~----~--------~~vr~~a~~~l~~l~~~~--~~~------------~~~~~l~~~l-~~  416 (521)
                      .  |.+.++.-+..+|...    +        .+-..-..+++|.++..-  ..+            ...+.++-.+ ..
T Consensus       570 lvpfie~iln~iqdlL~~~vtt~N~~s~~lt~fddqlyIfEtiGviI~l~n~paE~qaay~~~litpl~~~~~igl~~a~  649 (980)
T KOG2021|consen  570 LVPFIEEILNKIQDLLHIKVTTINAQSDNLTIFDDQLYIFETIGVIITLNNSPAELQAAYANTLITPLILDQIIGLLFAQ  649 (980)
T ss_pred             HHHHHHHHHHHHHHHHcCcCCCcCccccccccccccceeeecceEEEeCCCCCHHHHHHHHhcccChHHHHHHHHHHHHH
Confidence            2  2333333333333110    0        011111122222221100  000            0111222222 22


Q ss_pred             hhcCcchHH----HHHHHHHHHHhhcccC----------hHHHhhcHHHHHHhhcCC--CCchHHHHHHHHHHHHHhhhc
Q 009975          417 MINNPHYLY----RMTILRAISLLAPVMG----------SEITCSRLLPVVINASKD--RVPNIKFNVAKVLQSLIPIVD  480 (521)
Q Consensus       417 ~l~~~~~~~----r~~a~~~l~~l~~~~~----------~~~~~~~il~~l~~~l~d--~~~~VR~~a~~~l~~~~~~~~  480 (521)
                      +..|....+    -..++.+++.+++.+.          .......++..++..+.-  ....+|.+.-.+++.+...+|
T Consensus       650 lasde~~pv~Ia~c~~~lmaig~lakgf~~rlvt~~qvg~~~vf~~~ldvil~~ls~f~k~E~iRsavrft~hRmI~~lg  729 (980)
T KOG2021|consen  650 LASDEASPVVIAECHHILMAIGTLAKGFHIRLVTENQVGNMVVFSNILDVILVTLSFFNKFENIRSAVRFTFHRMIPILG  729 (980)
T ss_pred             HhccccccHHHHHHHHHHHHHHHHhhcccccCcchhcccHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHhcc
Confidence            334443333    2455667777776332          222233444444444432  366799999999999999988


Q ss_pred             hHHHHhhHHHHHHHhcCCCCcc
Q 009975          481 QSMVEKTIRPCLVELTEDPDVD  502 (521)
Q Consensus       481 ~~~~~~~~~~~l~~l~~D~~~~  502 (521)
                      ++.+ +.+-..+..+++|.|.+
T Consensus       730 ~~vl-Pfipklie~lL~s~d~k  750 (980)
T KOG2021|consen  730 NKVL-PFIPKLIELLLSSTDLK  750 (980)
T ss_pred             hhhh-cchHHHHHHHHhcCCHH
Confidence            7654 55555566678888776

>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]

Probab=96.32  E-value=0.87  Score=41.99  Aligned_cols=66  Identities=20%  Similarity=0.274  Sum_probs=47.2

Q ss_pred             hhhhhhhhhhhcCCCChHHHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhc
Q 009975           76 RVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQ  146 (521)
Q Consensus        76 r~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~  146 (521)
                      +..+..++...+++.|+- -.+-+..-..++.|.+-.||+.|++.|..+++.    .....+.+.+.++++
T Consensus        41 k~lasq~ip~~fk~fp~l-a~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~----d~~~rv~d~l~qLLn  106 (460)
T KOG2213|consen   41 KRLASQFIPRFFKHFPSL-ADEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKG----DALSRVNDVLVQLLN  106 (460)
T ss_pred             HHHHHHHHHHHHhhCchh-hhHHHHhhhccccccchhhHHHHHhccchhccC----chhhhhHHHHHHHHH
Confidence            345566777777777754 566777778889999999999999999888864    334445555555554

>PF13251 DUF4042: Domain of unknown function (DUF4042)

Probab=96.27  E-value=0.15  Score=42.44  Aligned_cols=126  Identities=20%  Similarity=0.186  Sum_probs=64.6

Q ss_pred             HHHHHcCCCcHHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChHHHhhcHHHHH
Q 009975          374 LCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVV  453 (521)
Q Consensus       374 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~il~~l  453 (521)
                      ++...+.|+++.+|.+|+.++..+.+....      .+..-.+ .+.+.-. =...-..++.+.         ..+-..+
T Consensus        44 Llt~il~Dp~~kvR~aA~~~l~~lL~gsk~------~L~~Ae~-~~~~~~s-FtslS~tLa~~i---------~~lH~~L  106 (182)
T PF13251_consen   44 LLTCILKDPSPKVRAAAASALAALLEGSKP------FLAQAEE-SKGPSGS-FTSLSSTLASMI---------MELHRGL  106 (182)
T ss_pred             hhHHHHcCCchhHHHHHHHHHHHHHHccHH------HHHHHHh-cCCCCCC-cccHHHHHHHHH---------HHHHHHH
Confidence            344567899999999999999988865321      1111110 0111000 000011111111         1122223


Q ss_pred             Hhhc-CCCCchHHHHHHHHHHHHHhhhc----hHHHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 009975          454 INAS-KDRVPNIKFNVAKVLQSLIPIVD----QSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDH  516 (521)
Q Consensus       454 ~~~l-~d~~~~VR~~a~~~l~~~~~~~~----~~~~~~~~~~~l~~l~~D~~~~vr~~a~~al~~l~~  516 (521)
                      ...+ .+.+..+-...++++..+++..+    +..+...+...+..+..+.|.+||..+..+++.+..
T Consensus       107 l~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s  174 (182)
T PF13251_consen  107 LLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLS  174 (182)
T ss_pred             HHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Confidence            3332 23355566667777777665432    234445555666666666777777777777776653

>COG5234 CIN1 Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones / Cytoskeleton]

Probab=96.26  E-value=1.3  Score=44.09  Aligned_cols=147  Identities=18%  Similarity=0.096  Sum_probs=82.4

Q ss_pred             HHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCch---hhHHHHHHH---------HHHhh--cCCChhHHHHHHHH
Q 009975           94 LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPA---HLKTDIMSI---------FEDLT--QDDQDSVRLLAVEG  159 (521)
Q Consensus        94 ~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~~---------l~~l~--~d~~~~vr~~a~~~  159 (521)
                      +.+.+...+..-.++.+..+|-.++..+..+.+.++-.   .+.+ +...         +..-.  -+.++.+...++..
T Consensus       243 ~l~~iV~f~~~s~Ss~~~~~rf~~a~~~aki~srl~w~l~~sfi~-ii~~~~en~~~s~l~~~cdii~tnel~w~~~i~~  321 (993)
T COG5234         243 YLEVIVDFLLSSVSSIDSFVRFSAAKGLAKIISRLPWNLAESFID-IIELMTENMFLSPLENTCDIIITNELVWHGAILF  321 (993)
T ss_pred             HHHHHHHHHHcCcccccHHHHHHHHhhHHHHHhhcccccHHHHHH-HHHhcccccchhhhhCccceeecchHHHHHHHHH
Confidence            45556666666667778999999999999999887742   1111 1111         11111  12345555555555


Q ss_pred             HHHHhhhcChhhhhhhhHHHHHHhcCC--------CChHHHHHHHHHHHHHHHHhCCCccc---cchHHHHHH-hcCCCh
Q 009975          160 CAALGKLLEPQDCVAHILPVIVNFSQD--------KSWRVRYMVANQLYELCEAVGPEPTR---MDLVPAYVR-LLRDNE  227 (521)
Q Consensus       160 l~~l~~~~~~~~~~~~l~~~l~~~~~d--------~~~~vR~~~~~~l~~i~~~~~~~~~~---~~l~~~l~~-~l~d~~  227 (521)
                      ++ ++...+=+....-+.|++.+.++=        +...+|.+++-.+-.+.+...+...+   ..++-.+.+ .+-|++
T Consensus       322 ~a-la~~~~id~~d~~i~~iI~kg~~y~~~~~~~v~g~~IRdss~f~vWs~~r~~S~s~~~~lqt~L~hll~~~alFDpe  400 (993)
T COG5234         322 FA-LAGAGLIDYSDCLILPIIEKGLSYEVRYGTRVTGQSIRDSSCFFVWSFYRCYSKSAIEGLQTNLIHLLLQTALFDPE  400 (993)
T ss_pred             HH-HhhccccchhhhhhhhheccccceeehheeeeccceeecccceeeeeeeeccccccchhHHHHHHHHHHhhhhcCch
Confidence            44 444433222222366666665542        22246666665555554443322221   124444444 678999


Q ss_pred             HHHHHHHHHhHHHHH
Q 009975          228 AEVRIAAAGKVTKFC  242 (521)
Q Consensus       228 ~~vr~~a~~~l~~l~  242 (521)
                      -.+|.+|..++-++.
T Consensus       401 l~vRr~a~Aal~E~i  415 (993)
T COG5234         401 LNVRRAATAALFEVI  415 (993)
T ss_pred             hhhhhHHHHHHHHHh
Confidence            999999887776543

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=96.24  E-value=1.2  Score=42.77  Aligned_cols=196  Identities=13%  Similarity=0.120  Sum_probs=105.7

Q ss_pred             HHHHHHHHHHHhhcChhHHHHhHHHHHHHhhcCCCCcchhhhhhhhhhhcCCCChHHHHHHHHHHHHhcCCCChHHHHHH
Q 009975           38 DKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSA  117 (521)
Q Consensus        38 ~~a~~~l~~i~~~~~~~~~~~~l~p~i~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~vr~~a  117 (521)
                      .+..+.+-.+....+.+++.++++-++.+++.++..  |....   .......+ ....    .+..++..+++.+...+
T Consensus        52 ~~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~--~~~~f---~~~~~~~~-~~~~----~fl~lL~~~d~~i~~~a  121 (429)
T cd00256          52 GQYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDT--RVKLF---HDDALLKK-KTWE----PFFNLLNRQDQFIVHMS  121 (429)
T ss_pred             HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchH--HHHHH---HHHhhccc-cchH----HHHHHHcCCchhHHHHH
Confidence            345566666777777788888999999888877532  22111   11111111 1122    22234556788999999


Q ss_pred             HHhHHHHHHhhCc---hhhHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHhhhcChh-hh-hhhhHHHHHHhcCC--CCh
Q 009975          118 ASNLGKFAATVEP---AHLKTDIMSIFEDLTQDD-QDSVRLLAVEGCAALGKLLEPQ-DC-VAHILPVIVNFSQD--KSW  189 (521)
Q Consensus       118 ~~~l~~l~~~~~~---~~~~~~l~~~l~~l~~d~-~~~vr~~a~~~l~~l~~~~~~~-~~-~~~l~~~l~~~~~d--~~~  189 (521)
                      +..+..++..-..   ....+.+.+.+...+... +......++.++..+...-.-. .. ....++.+...+..  .+.
T Consensus       122 ~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~  201 (429)
T cd00256         122 FSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGF  201 (429)
T ss_pred             HHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccH
Confidence            9999998764322   112333555555555433 3455666778887776542211 11 12244444444432  244


Q ss_pred             HHHHHHHHHHHHHHHH--hCCCccccchHHHHHHhcCCCh-HHHHHHHHHhHHHHHh
Q 009975          190 RVRYMVANQLYELCEA--VGPEPTRMDLVPAYVRLLRDNE-AEVRIAAAGKVTKFCR  243 (521)
Q Consensus       190 ~vR~~~~~~l~~i~~~--~~~~~~~~~l~~~l~~~l~d~~-~~vr~~a~~~l~~l~~  243 (521)
                      ...+.++-++-.+.-.  .........++|.+.+.+++.. ..|-+.++.+|..+..
T Consensus       202 Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~  258 (429)
T cd00256         202 QLQYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLIS  258 (429)
T ss_pred             HHHHHHHHHHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhh
Confidence            5666666555443321  1111223568888888887643 3344445555555555

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.18  E-value=0.6  Score=42.65  Aligned_cols=175  Identities=15%  Similarity=0.141  Sum_probs=113.6

Q ss_pred             CchhHHHHHHHHHHHHHHhhcChh--HHH-HhHHHHHHHhhcCCCCcchhhhhhhhhhhcCCCChHH-----HHHHHHHH
Q 009975           31 VEETCVRDKAVESLCRIGSQMRES--DLV-DWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDIL-----KTELRSIY  102 (521)
Q Consensus        31 ~~~~~vR~~a~~~l~~i~~~~~~~--~~~-~~l~p~i~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~-----~~~l~~~l  102 (521)
                      +.+..-|..|..-|..+++.++.-  .+. ..+.|.+. ..++.+..+|..|...++..+.+.|...     ...+-.++
T Consensus        94 s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~-~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll  172 (342)
T KOG2160|consen   94 SVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLG-YLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLL  172 (342)
T ss_pred             cCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHH-HhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHH
Confidence            456778889999999999998753  222 23445454 7788888999999999999998877541     12233455


Q ss_pred             HHhcCCCChHHHHHHHHhHHHHHHhhCchh---hHHHHHHHHHHhhcCC--ChhHHHHHHHHHHHHhhhcChh--hhhhh
Q 009975          103 TQLCQDDMPMVRRSAASNLGKFAATVEPAH---LKTDIMSIFEDLTQDD--QDSVRLLAVEGCAALGKLLEPQ--DCVAH  175 (521)
Q Consensus       103 ~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~---~~~~l~~~l~~l~~d~--~~~vr~~a~~~l~~l~~~~~~~--~~~~~  175 (521)
                      ..+.++++..+|..|..+++.+.+...+-.   ..-.=...+...++++  +...+..++..+..+...-..+  .....
T Consensus       173 ~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~  252 (342)
T KOG2160|consen  173 KILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSL  252 (342)
T ss_pred             HHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHh
Confidence            566677788899999999999998876421   1111134555666664  4456667778888777653321  12222


Q ss_pred             hHH-HHHHhcCCCChHHHHHHHHHHHHHHHHh
Q 009975          176 ILP-VIVNFSQDKSWRVRYMVANQLYELCEAV  206 (521)
Q Consensus       176 l~~-~l~~~~~d~~~~vR~~~~~~l~~i~~~~  206 (521)
                      .++ .+..+....++.++..+...+-......
T Consensus       253 ~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~  284 (342)
T KOG2160|consen  253 GFQRVLENLISSLDFEVNEAALTALLSLLSEL  284 (342)
T ss_pred             hhhHHHHHHhhccchhhhHHHHHHHHHHHHHH
Confidence            333 3344555567778887777665555433

>PF05536 Neurochondrin: Neurochondrin

Probab=96.18  E-value=1.6  Score=43.77  Aligned_cols=177  Identities=15%  Similarity=0.139  Sum_probs=112.7

Q ss_pred             ChhHHHHHHHHHHHHhhhcChh----hhhhhhHHHHHHhcCCCCh-HHHHHHHHHHHHHHHHhCC--CccccchHHHHHH
Q 009975          149 QDSVRLLAVEGCAALGKLLEPQ----DCVAHILPVIVNFSQDKSW-RVRYMVANQLYELCEAVGP--EPTRMDLVPAYVR  221 (521)
Q Consensus       149 ~~~vr~~a~~~l~~l~~~~~~~----~~~~~l~~~l~~~~~d~~~-~vR~~~~~~l~~i~~~~~~--~~~~~~l~~~l~~  221 (521)
                      ....+..|+.++..++.  +++    ...-.-+|.+.+.+...+. .+-..+.+++..++..-.+  .......++.+.+
T Consensus        70 ~~~~~~LavsvL~~f~~--~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~e  147 (543)
T PF05536_consen   70 PEEYLSLAVSVLAAFCR--DPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCE  147 (543)
T ss_pred             HHHHHHHHHHHHHHHcC--ChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHH
Confidence            34667788888888776  222    1223356777777766555 7778888888877732111  1122445666666


Q ss_pred             hcCCChHHHHHHHHHhHHHHHhhhCHHH------HHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccC--------hH
Q 009975          222 LLRDNEAEVRIAAAGKVTKFCRILNPEL------AIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLG--------KD  287 (521)
Q Consensus       222 ~l~d~~~~vr~~a~~~l~~l~~~~~~~~------~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~--------~~  287 (521)
                      ...+ .+.....|+..+..+....+.+.      ....+++.+...+.......|-.++..++.+....+        ..
T Consensus       148 i~~~-~~~~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~  226 (543)
T PF05536_consen  148 IIPN-QSFQMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSP  226 (543)
T ss_pred             HHHh-CcchHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChh
Confidence            6555 45667788888888777666332      223455666666655555566677777777765552        12


Q ss_pred             HHHHhHHHHHHHhhcC-CChHHHHHHHHHHHHhhhhhchhhH
Q 009975          288 ATIEQLLPIFLSLLKD-EFPDVRLNIISKLDQVNQVIGIDLL  328 (521)
Q Consensus       288 ~~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~~~~~~~~~~~  328 (521)
                      .+...+...+..+++. ..+.-|..++.....+.+..|.+++
T Consensus       227 ~W~~~l~~gl~~iL~sr~~~~~R~~al~Laa~Ll~~~G~~wl  268 (543)
T PF05536_consen  227 KWLSDLRKGLRDILQSRLTPSQRDPALNLAASLLDLLGPEWL  268 (543)
T ss_pred             hhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhChHhh
Confidence            3445666667776665 4578899999999999998887654

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=96.17  E-value=0.98  Score=42.00  Aligned_cols=170  Identities=17%  Similarity=0.185  Sum_probs=90.4

Q ss_pred             HHHHhcCCChHHHHHHHHHhHHHHhhhChhhhH--HHHHHHHHHHcCC----CcHHHHHHHHHHHHHHHHH--hCHHHHH
Q 009975          336 IVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD--DKLGALCMQWLQD----KVYSIRDAAANNLKRLAEE--FGPEWAM  407 (521)
Q Consensus       336 l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~--~~l~~~l~~~l~d----~~~~vr~~a~~~l~~l~~~--~~~~~~~  407 (521)
                      +.++++.+++.+...++..+..+....+.....  ..+++.+++++++    ++..++..++.+++.+...  +...+..
T Consensus       110 fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~  189 (312)
T PF03224_consen  110 FLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWK  189 (312)
T ss_dssp             HHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHT
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHh
Confidence            334666667777777777777776665543222  2445555555443    4556667778888777632  2222334


Q ss_pred             hhhHHHHHhhh-----cC--cchHHHHHHHHHHHHhhc--ccChHHHhhcHHHHHHhhcCCC-CchHHHHHHHHHHHHHh
Q 009975          408 QHITPQVLEMI-----NN--PHYLYRMTILRAISLLAP--VMGSEITCSRLLPVVINASKDR-VPNIKFNVAKVLQSLIP  477 (521)
Q Consensus       408 ~~l~~~l~~~l-----~~--~~~~~r~~a~~~l~~l~~--~~~~~~~~~~il~~l~~~l~d~-~~~VR~~a~~~l~~~~~  477 (521)
                      ...++.+.+.+     .+  .+.++...++.++-.+.=  ..-.......++|.+...+++. ...|-+-++.++.+++.
T Consensus       190 ~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~  269 (312)
T PF03224_consen  190 SNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLS  269 (312)
T ss_dssp             HHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTS
T ss_pred             cCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHh
Confidence            55566666665     22  345555555555554431  1112223355888888877653 44555567777777776


Q ss_pred             hhc----hHHHHhhHHHHHHHhcCC--CCccHHH
Q 009975          478 IVD----QSMVEKTIRPCLVELTED--PDVDVRF  505 (521)
Q Consensus       478 ~~~----~~~~~~~~~~~l~~l~~D--~~~~vr~  505 (521)
                      ...    ...+...+++.+..+...  .|+++..
T Consensus       270 ~~~~~~~~~mv~~~~l~~l~~L~~rk~~Dedl~e  303 (312)
T PF03224_consen  270 KAPKSNIELMVLCGLLKTLQNLSERKWSDEDLTE  303 (312)
T ss_dssp             SSSTTHHHHHHHH-HHHHHHHHHSS--SSHHHHH
T ss_pred             ccHHHHHHHHHHccHHHHHHHHhcCCCCCHHHHH
Confidence            533    233446677777777654  3555543

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>PF13251 DUF4042: Domain of unknown function (DUF4042)

Probab=96.13  E-value=0.094  Score=43.59  Aligned_cols=168  Identities=19%  Similarity=0.175  Sum_probs=86.8

Q ss_pred             HHHHHHHhHHHHHhhhCHHHHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccChHHHHHhHHHHHHHhhcCCChHHH
Q 009975          230 VRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVR  309 (521)
Q Consensus       230 vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr  309 (521)
                      ||.+|+.+|..+.+..++..+.. .++.+   +-|.                ..-+    ...-.+.+.-++.|+++.+|
T Consensus         2 vR~~Al~~L~al~k~~~~r~l~~-yW~~l---lP~~----------------~~~~----~~~~~sLlt~il~Dp~~kvR   57 (182)
T PF13251_consen    2 VRQAALQCLQALAKSTDKRSLFG-YWPAL---LPDS----------------VLQG----RPATPSLLTCILKDPSPKVR   57 (182)
T ss_pred             hhHHHHHHHHHHHHhcCCceeHh-hHHHH---CCCC----------------CCcC----CCCCcchhHHHHcCCchhHH
Confidence            68888888888888765544322 22222   2222                0000    01112344556789999999


Q ss_pred             HHHHHHHHHhhhhhchhhHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChhhhHHHHHH-HHHHHcCCCcHHHHH
Q 009975          310 LNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGA-LCMQWLQDKVYSIRD  388 (521)
Q Consensus       310 ~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~-~l~~~l~d~~~~vr~  388 (521)
                      .+|+..+..+.+...         +.+... ++...+ +    ..+..++..+|.-. . .+-. ++..+-.+.+..+-.
T Consensus        58 ~aA~~~l~~lL~gsk---------~~L~~A-e~~~~~-~----~sFtslS~tLa~~i-~-~lH~~Ll~~L~~E~~~~~l~  120 (182)
T PF13251_consen   58 AAAASALAALLEGSK---------PFLAQA-EESKGP-S----GSFTSLSSTLASMI-M-ELHRGLLLALQAEKSPPVLT  120 (182)
T ss_pred             HHHHHHHHHHHHccH---------HHHHHH-HhcCCC-C----CCcccHHHHHHHHH-H-HHHHHHHHHHhcccccHHHH
Confidence            999999999876432         111111 111100 0    01111111122110 0 1111 122223445566666


Q ss_pred             HHHHHHHHHHHHhCH----HHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhc
Q 009975          389 AAANNLKRLAEEFGP----EWAMQHITPQVLEMINNPHYLYRMTILRAISLLAP  438 (521)
Q Consensus       389 ~a~~~l~~l~~~~~~----~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~  438 (521)
                      ..++++..++....-    ..+...++..+...+.+.+..+|..++.+++.+..
T Consensus       121 q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s  174 (182)
T PF13251_consen  121 QLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLS  174 (182)
T ss_pred             HHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Confidence            677777777654421    23455666777777777777777777777777765

>KOG1851 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.11  E-value=2.9  Score=45.98  Aligned_cols=152  Identities=9%  Similarity=0.039  Sum_probs=93.4

Q ss_pred             hhHHHHHHHHHH-HcCCCcHHHHHHHHHHHHHHH--HHhC-HHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccC
Q 009975          366 FFDDKLGALCMQ-WLQDKVYSIRDAAANNLKRLA--EEFG-PEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMG  441 (521)
Q Consensus       366 ~~~~~l~~~l~~-~l~d~~~~vr~~a~~~l~~l~--~~~~-~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~  441 (521)
                      ...+.++..+.. ...+..|.+|.++++.+..++  ..++ .+...+.+...+...++|.+-.+|+.|+.++..+...--
T Consensus      1522 ~l~~e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~Fv~~~~~r~dI~~l~~s~l~D~~i~vre~Aa~~Lsgl~~~s~ 1601 (1710)
T KOG1851|consen 1522 HLQPEFLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNIFVSQELRRDDIRKLLESLLNDDQIEVREEAAKCLSGLLQGSK 1601 (1710)
T ss_pred             hhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHhccc
Confidence            334445555543 345678999999998887764  2233 222346677778888999999999999999999886322


Q ss_pred             hHHHhhcHHHHHHhhcCCCCchHHH-HHHHHHHHHHhhhchH--HHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHHhh
Q 009975          442 SEITCSRLLPVVINASKDRVPNIKF-NVAKVLQSLIPIVDQS--MVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVM  518 (521)
Q Consensus       442 ~~~~~~~il~~l~~~l~d~~~~VR~-~a~~~l~~~~~~~~~~--~~~~~~~~~l~~l~~D~~~~vr~~a~~al~~l~~~~  518 (521)
                      ........-+............++. .|.-.|+.++-+++..  -+....+-.+...++|+ ..++..+.+++......+
T Consensus      1602 ~~~~~~k~d~~~~~~~s~s~~~i~~HgavlgLgA~VlafPy~vP~wip~~L~~Ls~fa~e~-~~i~~tvkktvseFrrth 1680 (1710)
T KOG1851|consen 1602 FQFVSDKRDTTSNILQSKSKDEIKAHGAVLGLGAIVLAFPYVVPLWIPKPLMNLSSFARES-AAIKQTVKKTVSEFRRTH 1680 (1710)
T ss_pred             cccchHhhhhhhhhhhhcchHHHHhhhhHHHHHHHHHhccccchhhhHHHHHHHHhhcCCc-hHHHHHHHHHHHHHHHHh
Confidence            1111222222333333333334443 6777888887766532  23344445555566776 678888888888766554

>COG5234 CIN1 Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones / Cytoskeleton]

Probab=96.11  E-value=1.7  Score=43.36  Aligned_cols=196  Identities=18%  Similarity=0.172  Sum_probs=97.5

Q ss_pred             ChhhhhccccCCCcch---hHH--------hhhhHHhhhhc--CchhHHHHHHHHHHHHHHhhcChhHHHHhHHHHHHHh
Q 009975            1 MAEELGVFIPYVGGVE---HAH--------VLLPPLETLCT--VEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRL   67 (521)
Q Consensus         1 ~a~~l~~~~~~~~~~~---~~~--------~l~~~l~~l~~--~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~p~i~~~   67 (521)
                      +|+.+.+.+.++++.-   +.+        .++..|++-++  +.++-+-..++--++ ++...+-+-....+.|.+...
T Consensus       266 ~a~~~aki~srl~w~l~~sfi~ii~~~~en~~~s~l~~~cdii~tnel~w~~~i~~~a-la~~~~id~~d~~i~~iI~kg  344 (993)
T COG5234         266 AAKGLAKIISRLPWNLAESFIDIIELMTENMFLSPLENTCDIIITNELVWHGAILFFA-LAGAGLIDYSDCLILPIIEKG  344 (993)
T ss_pred             HHhhHHHHHhhcccccHHHHHHHHHhcccccchhhhhCccceeecchHHHHHHHHHHH-Hhhccccchhhhhhhhheccc
Confidence            4677778888888762   111        24444554444  334444444443333 444333333233466766554


Q ss_pred             hc-C-------CCCcchhhhhhhhhhhcCC----CChHHHHHHHHHHHH-hcCCCChHHHHHHHHhHHHHHHhhCchhhH
Q 009975           68 AA-G-------EWFTARVSACGLFHIAYPS----APDILKTELRSIYTQ-LCQDDMPMVRRSAASNLGKFAATVEPAHLK  134 (521)
Q Consensus        68 ~~-~-------~~~~~r~~~~~~~~~~~~~----~~~~~~~~l~~~l~~-l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~  134 (521)
                      ++ +       +-..+|.+++-.+=..+..    ..+.....+.-++.+ ..-|++-.+|++|..+|.++..........
T Consensus       345 ~~y~~~~~~~v~g~~IRdss~f~vWs~~r~~S~s~~~~lqt~L~hll~~~alFDpel~vRr~a~Aal~E~iGR~~s~a~g  424 (993)
T COG5234         345 LSYEVRYGTRVTGQSIRDSSCFFVWSFYRCYSKSAIEGLQTNLIHLLLQTALFDPELNVRRAATAALFEVIGRHASIADG  424 (993)
T ss_pred             cceeehheeeeccceeecccceeeeeeeeccccccchhHHHHHHHHHHhhhhcCchhhhhhHHHHHHHHHhccCCCcccc
Confidence            44 1       1124555555333222221    223333345555544 677899999999999998876552222222


Q ss_pred             HHHHHHHHHhhcCCChhH-HHH-HHHHHHHHhhhcChh-hhhhhhHH-HHHHhcCCCChHHHHHHHHHHHHHHH
Q 009975          135 TDIMSIFEDLTQDDQDSV-RLL-AVEGCAALGKLLEPQ-DCVAHILP-VIVNFSQDKSWRVRYMVANQLYELCE  204 (521)
Q Consensus       135 ~~l~~~l~~l~~d~~~~v-r~~-a~~~l~~l~~~~~~~-~~~~~l~~-~l~~~~~d~~~~vR~~~~~~l~~i~~  204 (521)
                      ..++.++.      ...| |.. ....+.......++- .+. +++. .+.+.+.+-++.++....-++..+.+
T Consensus       425 ~~lIslIN------~~sv~r~s~csg~~~r~~~~~~k~~~Ce-dVF~diLl~Nl~H~~~~~k~~~~y~l~~liK  491 (993)
T COG5234         425 LSLISLIN------YVSVTRISNCSGDLCRKVAHFPKFRSCE-DVFQDILLTNLQHWDVKVKQLSAYSLRQLIK  491 (993)
T ss_pred             hhhhhhcc------ceecchhhhcchHHHHHhcCccccchHH-HHHHHHHHhhhhccchhhhhhccccHHHHhc
Confidence            23333331      1111 111 112222222222221 222 3333 36667778888899988888887754

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=96.08  E-value=1.4  Score=42.24  Aligned_cols=68  Identities=21%  Similarity=0.209  Sum_probs=45.7

Q ss_pred             HHHHHHhhcC-CCCchHHHHHHHHHHHHHhhhc--hHHHH-hhHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 009975          449 LLPVVINASK-DRVPNIKFNVAKVLQSLIPIVD--QSMVE-KTIRPCLVELTEDPDVDVRFFATQAIQSIDH  516 (521)
Q Consensus       449 il~~l~~~l~-d~~~~VR~~a~~~l~~~~~~~~--~~~~~-~~~~~~l~~l~~D~~~~vr~~a~~al~~l~~  516 (521)
                      ++..+..++. ..++.+-.-||.=+|.++..++  ..... -.....+=++++++|++||..|..|++.++-
T Consensus       354 llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~  425 (429)
T cd00256         354 LLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLMV  425 (429)
T ss_pred             HHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            4455555553 3345556778888888888763  33222 3355556677888899999999999988753

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]

Probab=96.01  E-value=2  Score=43.32  Aligned_cols=455  Identities=13%  Similarity=0.140  Sum_probs=229.5

Q ss_pred             chhHHHHHHHHHHHHHHhhcChhHHHHhHHHHHHHhhcCCCCcchhhhhhhhh----hhcCCCCh----HHHHHHHHHHH
Q 009975           32 EETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFH----IAYPSAPD----ILKTELRSIYT  103 (521)
Q Consensus        32 ~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~p~i~~~~~~~~~~~r~~~~~~~~----~~~~~~~~----~~~~~l~~~l~  103 (521)
                      -|+..|+.|+.-++.+=..  | ..++..+..+.+--  .+..+|.-+...+.    .-+.....    .++..+...+.
T Consensus        17 vdsa~KqqA~~y~~qiKsS--p-~aw~Icie~l~~~t--s~d~vkf~clqtL~e~vrekyne~nl~elqlvR~sv~swlk   91 (980)
T KOG2021|consen   17 VDSATKQQAIEYLNQIKSS--P-NAWEICIELLINET--SNDLVKFYCLQTLIELVREKYNEANLNELQLVRFSVTSWLK   91 (980)
T ss_pred             ccHHHHHHHHHHHHhhcCC--c-cHHHHHHHHHHhhc--ccchhhhhhHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHH
Confidence            3678888888877765432  2 23444454443322  11223332322221    11221211    15677777776


Q ss_pred             Hhc-CCC----ChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHH-hhcCCChhHHHHHHHHHHHHhhhcCh--------
Q 009975          104 QLC-QDD----MPMVRRSAASNLGKFAATVEPAHLKTDIMSIFED-LTQDDQDSVRLLAVEGCAALGKLLEP--------  169 (521)
Q Consensus       104 ~l~-~~~----~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~-l~~d~~~~vr~~a~~~l~~l~~~~~~--------  169 (521)
                      ... .++    -+.++.++++.+..+.-...+. .|+.+..-+.. ...++...--..-++.+..+.+.+.+        
T Consensus        92 ~qvl~ne~~~~p~fi~Nk~aqvlttLf~~eYp~-~WnsfF~dlmsv~~~~s~~~~~dfflkvllaIdsEiad~dv~rT~e  170 (980)
T KOG2021|consen   92 FQVLGNEQTKLPDFIMNKIAQVLTTLFMLEYPD-CWNSFFDDLMSVFQVDSAISGLDFFLKVLLAIDSEIADQDVIRTKE  170 (980)
T ss_pred             HHHhCcccCCCChHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHhcccchhhHHHHHHHHHHhhhHhhhccccCChH
Confidence            543 333    4679999999999877554432 34433333222 22222221122333444443332211        


Q ss_pred             ---------hhhhhhhHH--------HHHHhcCCCChHHHHHHHHHHHHHHHHhCCCcc-ccchHHHHHHhcCCChHHHH
Q 009975          170 ---------QDCVAHILP--------VIVNFSQDKSWRVRYMVANQLYELCEAVGPEPT-RMDLVPAYVRLLRDNEAEVR  231 (521)
Q Consensus       170 ---------~~~~~~l~~--------~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~-~~~l~~~l~~~l~d~~~~vr  231 (521)
                               +..+..-+|        ++...-+..++.+-..+.++++++..-+.-... .+..++.+.+++.  -.++|
T Consensus       171 ei~knnliKDaMR~ndip~lv~~wyqil~~y~n~~npgl~~~cLdc~g~fVSWIdInLIaNd~f~nLLy~fl~--ieelR  248 (980)
T KOG2021|consen  171 EILKNNLIKDAMRDNDIPKLVNVWYQILKLYENIVNPGLINSCLDCIGSFVSWIDINLIANDYFLNLLYKFLN--IEELR  248 (980)
T ss_pred             HHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHh--HHHHH
Confidence                     111111111        222222334888889999999999887664332 3557888888887  46899


Q ss_pred             HHHHHhHHHHHhhh-CHHHHHHhhhHHHHH-------hccC--CcHHHHHHHHHHHHcccccc-----------Ch---H
Q 009975          232 IAAAGKVTKFCRIL-NPELAIQHILPCVKE-------LSSD--SSQHVRSALASVIMGMAPLL-----------GK---D  287 (521)
Q Consensus       232 ~~a~~~l~~l~~~~-~~~~~~~~~~~~l~~-------~~~d--~~~~vr~~~~~~l~~i~~~~-----------~~---~  287 (521)
                      .+|+.++-.+...- .|.+ +=.++..+.+       ...|  .+..+-+...+.+..++..+           ..   +
T Consensus       249 ~aac~cilaiVsKkMkP~d-KL~lln~L~q~l~lfg~~s~dq~~d~df~e~vskLitg~gvel~~i~s~lnseld~~~kq  327 (980)
T KOG2021|consen  249 IAACNCILAIVSKKMKPMD-KLALLNMLNQTLELFGYHSADQMDDLDFWESVSKLITGFGVELTIIISQLNSELDTLYKQ  327 (980)
T ss_pred             HHHHHHHHHHHhcCCChhH-HHHHHHHHHHHHHHHhhhccccccCchHHHHHHHHHhhcceeeehhHhhhhhccCHHHHH
Confidence            99999998876643 3321 1112222211       1122  33333344444443332211           10   0


Q ss_pred             H---HHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchh---------hHhhhHHHHHHHHh------cCCC-----
Q 009975          288 A---TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID---------LLSQSLLPAIVELA------EDRH-----  344 (521)
Q Consensus       288 ~---~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~---------~~~~~~~~~l~~~~------~~~~-----  344 (521)
                      .   ....++|.+++.+.+++.++-.+....+......+...         .+...+...+.++.      .|.+     
T Consensus       328 n~l~~ll~~vpyllq~l~~e~ddit~~ifpFlsdyl~~LKkl~~ls~~qk~~l~~illai~kqicydemy~nddn~tg~E  407 (980)
T KOG2021|consen  328 NVLSILLEIVPYLLQFLNNEFDDITAKIFPFLSDYLAFLKKLKALSSPQKVPLHKILLAIFKQICYDEMYFNDDNVTGDE  407 (980)
T ss_pred             HHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHhhcccccchhhccHHHHHHHHHHHHhccHHhhcccCCCCch
Confidence            0   12346888899998888887777666665544333211         11122223333332      1111     


Q ss_pred             -----hHHHHHHHHHhHHHHhhhChhhhHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHHHHHhCHHH--------H--
Q 009975          345 -----WRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQW---LQDKVYSIRDAAANNLKRLAEEFGPEW--------A--  406 (521)
Q Consensus       345 -----~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~---l~d~~~~vr~~a~~~l~~l~~~~~~~~--------~--  406 (521)
                           ..+|...--.... .....++.+...+...+-..   -+.++|..-+.|+..+-.+.+.+..+.        .  
T Consensus       408 eEa~f~e~RkkLk~fqdt-i~~idpsl~l~~Ir~slS~al~ns~e~swqevE~Aiylly~lgE~l~~~~~~~nsgd~s~~  486 (980)
T KOG2021|consen  408 EEAFFEEVRKKLKNFQDT-IVVIDPSLFLNNIRQSLSAALMNSKEESWQEVELAIYLLYNLGECLKNNYFGLNSGDISTS  486 (980)
T ss_pred             HHHHHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhccccccccccCccccHH
Confidence                 2345543322222 23344454444444444333   345677777888888777776553221        1  


Q ss_pred             --HhhhHHHHHh--hhcCcchHHHHHHHHHHHHhhcccChH-HHhhcHHHHHHh--hcCCCCchHHHHHHHHHHHHHhhh
Q 009975          407 --MQHITPQVLE--MINNPHYLYRMTILRAISLLAPVMGSE-ITCSRLLPVVIN--ASKDRVPNIKFNVAKVLQSLIPIV  479 (521)
Q Consensus       407 --~~~l~~~l~~--~l~~~~~~~r~~a~~~l~~l~~~~~~~-~~~~~il~~l~~--~l~d~~~~VR~~a~~~l~~~~~~~  479 (521)
                        ...+.+.+..  ....++..+.....+.+.+-...+..+ ...+.++...+.  ++.+.+..||.+|......+.+.+
T Consensus       487 ~vl~~~~~ll~tsqv~~h~h~lVqLlfmE~ivRY~kff~~esq~ip~vL~aFld~rglhn~ne~Vr~RawYLF~RfVKlL  566 (980)
T KOG2021|consen  487 QVLFLNELLLMTSQVLAHDHELVQLLFMELIVRYNKFFSTESQKIPLVLNAFLDSRGLHNKNENVRLRAWYLFTRFVKLL  566 (980)
T ss_pred             HHHHHHHHHHHHcccccCCchHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHccchhccccccccchHHHHHHHHHHHHH
Confidence              1123333332  345567777777777776654443322 122333333322  467779999999999999998876


Q ss_pred             chH--HHHhhHHHHHHHhc
Q 009975          480 DQS--MVEKTIRPCLVELT  496 (521)
Q Consensus       480 ~~~--~~~~~~~~~l~~l~  496 (521)
                      .++  .+.+.++..+..++
T Consensus       567 kkqlvpfie~iln~iqdlL  585 (980)
T KOG2021|consen  567 KKQLVPFIEEILNKIQDLL  585 (980)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            654  23344555555444

>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes

Probab=95.95  E-value=0.93  Score=39.42  Aligned_cols=134  Identities=16%  Similarity=0.180  Sum_probs=81.7

Q ss_pred             HHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcChhhhhhhhHHHHHHhcCC-CChHHHHHH-HHHHHHHHHHhCCCccc
Q 009975          135 TDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQD-KSWRVRYMV-ANQLYELCEAVGPEPTR  212 (521)
Q Consensus       135 ~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d-~~~~vR~~~-~~~l~~i~~~~~~~~~~  212 (521)
                      +....+...+..++....|..|+.++........     ...++.+...+.+ ++|.+--.. ...++.+....      
T Consensus        50 ~~~~~l~~~L~~~~~~E~~~la~~il~~~~~~~~-----~~~~~~~~~~~~~~~~W~~~D~~~~~~~~~~~~~~------  118 (213)
T PF08713_consen   50 EELYELADELWESGYREERYLALLILDKRRKKLT-----EEDLELLEKWLPDIDNWATCDSLCSKLLGPLLKKH------  118 (213)
T ss_dssp             HHHHHHHHHHHCSSCHHHHHHHHHHHHHCGGG-------HHHHHHHHHCCCCCCCHHHHHHHTHHHHHHHHHHH------
T ss_pred             hHHHHHHHHHcCCchHHHHHHHHHHhHHHhhhhh-----HHHHHHHHHHhccCCcchhhhHHHHHHHHHHHHhh------
Confidence            4555666667777777777777777765443322     1245555555554 566665555 33345443321      


Q ss_pred             cchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccc
Q 009975          213 MDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPL  283 (521)
Q Consensus       213 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~  283 (521)
                      +.+.+.+.+.+++++.-+|.+++..+......    ...+.++..+.....|++..||.+...++..++..
T Consensus       119 ~~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~----~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~  185 (213)
T PF08713_consen  119 PEALELLEKWAKSDNEWVRRAAIVMLLRYIRK----EDFDELLEIIEALLKDEEYYVQKAIGWALREIGKK  185 (213)
T ss_dssp             GGHHHHHHHHHHCSSHHHHHHHHHCTTTHGGG----CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHh----cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHh
Confidence            45677777778777777777776665444333    22345666666777778888888888887777644

The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.

>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised

Probab=95.94  E-value=0.87  Score=42.95  Aligned_cols=57  Identities=14%  Similarity=0.057  Sum_probs=32.7

Q ss_pred             CCChHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHh
Q 009975          186 DKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCR  243 (521)
Q Consensus       186 d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~  243 (521)
                      +.+.........++..-...+ .....+.++..+.+.++|..+.+|+.-+..++....
T Consensus        34 E~nE~aL~~~l~al~~~~~~~-~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~   90 (339)
T PF12074_consen   34 ESNEAALSALLSALFKHLFFL-SSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALW   90 (339)
T ss_pred             hcCHHHHHHHHHHHHHHHHHh-CcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHh
Confidence            455555555555555554444 222345666666666666666666666666666554

This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.

>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised

Probab=95.92  E-value=1.2  Score=42.08  Aligned_cols=216  Identities=16%  Similarity=0.068  Sum_probs=109.0

Q ss_pred             HHHHHHHHHccccccChHHHHHhHHHHHHHhh-cCCChHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHhcCCChHHH
Q 009975          270 RSALASVIMGMAPLLGKDATIEQLLPIFLSLL-KDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVR  348 (521)
Q Consensus       270 r~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr  348 (521)
                      |...+..+..+.. .+   ....+...+..++ ++.++......+.++..-+..++. .+.+.++..+.+-++|+...+|
T Consensus         4 r~~~~~~L~~l~~-~~---~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~-~~~~~~~~~~~kGl~~kk~~vR   78 (339)
T PF12074_consen    4 RVLHASMLSSLPS-SS---LSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFLSS-ELPKKVVDAFKKGLKDKKPPVR   78 (339)
T ss_pred             HHHHHHHHHhCCC-cc---hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCc-CCCHHHHHHHHHHhcCCCCcHH
Confidence            3444444444443 11   2344455555544 356777777888888777666532 2336777888888888887788


Q ss_pred             HHHHHHhHHHHh---hhChhhhHHHHHHHHHHHc----CCCcHHHH----HHHHHHHHHHHHHhCHHHH------H----
Q 009975          349 LAIIEYIPLLAS---QLGVGFFDDKLGALCMQWL----QDKVYSIR----DAAANNLKRLAEEFGPEWA------M----  407 (521)
Q Consensus       349 ~~~~~~l~~l~~---~~~~~~~~~~l~~~l~~~l----~d~~~~vr----~~a~~~l~~l~~~~~~~~~------~----  407 (521)
                      ...+..++....   .-....+...+.|.+.+.+    ..+.....    .++.-.+. +.. ...+..      .    
T Consensus        79 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~-~~~-~~~~~~~~~~~~~~~l~  156 (339)
T PF12074_consen   79 RAWLLCLGEALWESPNSDSLKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLA-LSS-WKLDKIDSKNISFWSLA  156 (339)
T ss_pred             HHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHH-hcc-ccchhhhhhhhhhhhhc
Confidence            888887777765   1111223344555555444    33333322    11111111 000 000000      0    


Q ss_pred             ----hh--hHHHHHhhhcCcchHHHHHHHHHHHHhhcccChH---HHhhcHHHHHHhhcCCC--CchHHHHHHHHHHHHH
Q 009975          408 ----QH--ITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE---ITCSRLLPVVINASKDR--VPNIKFNVAKVLQSLI  476 (521)
Q Consensus       408 ----~~--l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~---~~~~~il~~l~~~l~d~--~~~VR~~a~~~l~~~~  476 (521)
                          ..  +-+.+..-+  .....-...++++..+...+...   .....+...++.++.++  .+.||..|..++..+.
T Consensus       157 ~~~kps~ll~~kvyskl--~~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~  234 (339)
T PF12074_consen  157 LDPKPSFLLSEKVYSKL--ASEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLY  234 (339)
T ss_pred             cCCCcchhcCHHHHhcc--CCHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence                00  011111111  11222334445555555433221   11234555666666666  8999999999999988


Q ss_pred             hhhchHHHHhhHHHHHHHh
Q 009975          477 PIVDQSMVEKTIRPCLVEL  495 (521)
Q Consensus       477 ~~~~~~~~~~~~~~~l~~l  495 (521)
                      ...+.. +...++..+.+.
T Consensus       235 ~~~~~~-l~~~li~~l~~~  252 (339)
T PF12074_consen  235 ASNPEL-LSKSLISGLWKW  252 (339)
T ss_pred             HhChHH-HHHHHHHHHHHH
Confidence            764432 445555555554

This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.

>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter

Probab=95.90  E-value=0.19  Score=41.48  Aligned_cols=87  Identities=17%  Similarity=0.241  Sum_probs=63.8

Q ss_pred             ccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHH---HHHHhhhHHHHHhccCCcHHHHHHHHHHHHcc---ccccC
Q 009975          212 RMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE---LAIQHILPCVKELSSDSSQHVRSALASVIMGM---APLLG  285 (521)
Q Consensus       212 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i---~~~~~  285 (521)
                      ...++|.+...+...+...|..|...+..+.+..+.+   .+.+++++.++..++..++.|...++.++..+   .+..|
T Consensus        36 y~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG  115 (183)
T PF10274_consen   36 YHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVG  115 (183)
T ss_pred             hhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhh
Confidence            4678899999888888888888888888888873333   34567777788888889999999998888888   55566


Q ss_pred             hHH--HHHhHHHHHH
Q 009975          286 KDA--TIEQLLPIFL  298 (521)
Q Consensus       286 ~~~--~~~~l~~~l~  298 (521)
                      +..  +..+++|.+.
T Consensus       116 ~aLvPyyrqLLp~ln  130 (183)
T PF10274_consen  116 EALVPYYRQLLPVLN  130 (183)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            432  2334455444

The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.

>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex

Probab=95.83  E-value=0.25  Score=46.31  Aligned_cols=132  Identities=19%  Similarity=0.263  Sum_probs=80.1

Q ss_pred             HhhcCCChHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHhcCC-------ChHHHHHHHHHhHHHHhh--hChhhhHH
Q 009975          299 SLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDR-------HWRVRLAIIEYIPLLASQ--LGVGFFDD  369 (521)
Q Consensus       299 ~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~-------~~~vr~~~~~~l~~l~~~--~~~~~~~~  369 (521)
                      ..+.+++...|..|+..|..=..       ...++|.|..++.+.       +...-...++....+..+  +.-+.+.-
T Consensus       185 ~a~~~~~~~~r~~aL~sL~tD~g-------l~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~Ylh  257 (343)
T cd08050         185 EALVGSNEEKRREALQSLRTDPG-------LQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEPYLH  257 (343)
T ss_pred             HHHhCCCHHHHHHHHHHhccCCC-------chhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHHhHH
Confidence            33444667777777766654222       155677766655332       344434444444444433  22345556


Q ss_pred             HHHHHHHHHc----------CCCcHHHHHHHHHHHHHHHHHhCHH--HHHhhhHHHHHhhhcCcc--hHHHHHHHHHHHH
Q 009975          370 KLGALCMQWL----------QDKVYSIRDAAANNLKRLAEEFGPE--WAMQHITPQVLEMINNPH--YLYRMTILRAISL  435 (521)
Q Consensus       370 ~l~~~l~~~l----------~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~~~~--~~~r~~a~~~l~~  435 (521)
                      .++|.+++++          .++.|.+|..|+..++.++..++..  .....++..+.+.+.|+.  ......|+..+..
T Consensus       258 ~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~YGAi~GL~~  337 (343)
T cd08050         258 QLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHYGAIVGLSA  337 (343)
T ss_pred             HHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchhhHHHHHHHH
Confidence            6888888775          3567899999999999999888654  234556656666666543  4447777777776


Q ss_pred             hh
Q 009975          436 LA  437 (521)
Q Consensus       436 l~  437 (521)
                      ++
T Consensus       338 lG  339 (343)
T cd08050         338 LG  339 (343)
T ss_pred             hC
Confidence            64

The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as

>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]

Probab=95.75  E-value=0.81  Score=44.67  Aligned_cols=145  Identities=11%  Similarity=-0.026  Sum_probs=101.5

Q ss_pred             HHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChH----HHh
Q 009975          371 LGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE----ITC  446 (521)
Q Consensus       371 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~----~~~  446 (521)
                      ....+.....|-++.+|.-+...++.++..+...+..-..+...-..+.|.+..+|......+..++.+.+..    .+.
T Consensus       276 cdsvfvsRy~Dv~d~IRv~c~~~L~dwi~lvP~yf~k~~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f~  355 (740)
T COG5537         276 CDSVFVSRYIDVDDVIRVLCSMSLRDWIGLVPDYFRKILGLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHTDAIRRFV  355 (740)
T ss_pred             HHHHHhhhccchhHHHHHHHHHHHHHHHhcchHHHHhhhcccccccccccchHHHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence            3445567788999999999999999998877665555555666667888999999999999999998755432    355


Q ss_pred             hcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchHHHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHHhh
Q 009975          447 SRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVM  518 (521)
Q Consensus       447 ~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~~~~~~~~l~~l~~D~~~~vr~~a~~al~~l~~~~  518 (521)
                      +.+...++..+.-...-||..+.+.+..+....--   ...-.-.+..+.-|-.++-|....+++.++++..
T Consensus       356 eRFk~rILE~~r~D~d~VRi~sik~l~~lr~lg~L---~~SeIlIvsscmlDi~pd~r~~~~E~v~~icK~~  424 (740)
T COG5537         356 ERFKDRILEFLRTDSDCVRICSIKSLCYLRILGVL---SSSEILIVSSCMLDIIPDSRENIVESVESICKID  424 (740)
T ss_pred             HHHHHHHHHHHhhccchhhHHHHHHHHHHHHhccc---chhHHHHHHHHHhcCCCcchHHHHHHHHHHHHHH
Confidence            67777777766555555999999999887653211   1122223344556666776666777777776654

>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism

Probab=95.73  E-value=2.1  Score=41.37  Aligned_cols=31  Identities=16%  Similarity=0.269  Sum_probs=17.2

Q ss_pred             HhHHHHHHHhhcCCChHHHHHHHHHHHHhhh
Q 009975          291 EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQ  321 (521)
Q Consensus       291 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~  321 (521)
                      ..++-.++.++.++++.-|......+..+..
T Consensus       132 ~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~  162 (409)
T PF01603_consen  132 QKFIKKLLELFDSPDPRERDYLKTILHRIYG  162 (409)
T ss_dssp             HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence            3445555556666666666655555555443

The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.73  E-value=2.8  Score=42.65  Aligned_cols=157  Identities=18%  Similarity=0.125  Sum_probs=94.7

Q ss_pred             hhhcCchhHHHHHHHHHHHHHHhhcChhHHHHhHHHHHHHhhcCCCCcchhhhhhhhhhhcCCCChHHHHHHHHHHHHhc
Q 009975           27 TLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLC  106 (521)
Q Consensus        27 ~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~p~i~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~  106 (521)
                      +.-++.=..-|+.|++.|..+++.+..+-...-+-|++.-+-.|                  +.+++..+..+..+..+.
T Consensus        30 RvessTL~eDRR~A~rgLKa~srkYR~~Vga~Gmk~li~vL~~D------------------~~D~E~ik~~LdTl~il~   91 (970)
T KOG0946|consen   30 RVESSTLLEDRRDAVRGLKAFSRKYREEVGAQGMKPLIQVLQRD------------------YMDPEIIKYALDTLLILT   91 (970)
T ss_pred             HHhhccchhhHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHhhc------------------cCCHHHHHHHHHHHHHHH
Confidence            33444445559999999999999876554455566666544333                  234444556666555544


Q ss_pred             C-CCChHHHHHH--HHhHHH-HHHhhCchhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcChhh-----hhhhhH
Q 009975          107 Q-DDMPMVRRSA--ASNLGK-FAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQD-----CVAHIL  177 (521)
Q Consensus       107 ~-~~~~~vr~~a--~~~l~~-l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~-----~~~~l~  177 (521)
                      . +++|.|-...  ...+|. ++..+.   ..+..+.++.......+.-||..+++.+..+...-+.+.     ..+.-+
T Consensus        92 ~~dd~~~v~dds~qsdd~g~~iae~fi---k~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gI  168 (970)
T KOG0946|consen   92 SHDDSPEVMDDSTQSDDLGLWIAEQFI---KNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGI  168 (970)
T ss_pred             hcCcchhhcccchhhhHHHHHHHHHHH---cCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhH
Confidence            3 3334433221  222332 222222   124456666777777788999999999999988877641     112234


Q ss_pred             HHHHHhcCCCChHHHHHHHHHHHHHHH
Q 009975          178 PVIVNFSQDKSWRVRYMVANQLYELCE  204 (521)
Q Consensus       178 ~~l~~~~~d~~~~vR~~~~~~l~~i~~  204 (521)
                      .-+..++.|....+|..+.-.+..+.+
T Consensus       169 S~lmdlL~DsrE~IRNe~iLlL~eL~k  195 (970)
T KOG0946|consen  169 SKLMDLLRDSREPIRNEAILLLSELVK  195 (970)
T ss_pred             HHHHHHHhhhhhhhchhHHHHHHHHHc
Confidence            456667777777788888777776654

>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]

Probab=95.72  E-value=2.7  Score=42.47  Aligned_cols=422  Identities=10%  Similarity=0.053  Sum_probs=211.4

Q ss_pred             CchhHHHHHHHHHHHHHHhhcChhHHHHhHHHHHHHhhcCC-CCcch-hhhhhhhhhhc---C-----C----CChHHHH
Q 009975           31 VEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGE-WFTAR-VSACGLFHIAY---P-----S----APDILKT   96 (521)
Q Consensus        31 ~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~p~i~~~~~~~-~~~~r-~~~~~~~~~~~---~-----~----~~~~~~~   96 (521)
                      +.|+.+|..|...|..+-+.=+      .+...+.-.+.|+ ...+| .+++.+-..+.   .     +    .++..++
T Consensus        14 dada~~rt~AE~~Lk~leKqPg------Fv~all~i~s~de~~lnvklsAaIYfKNkI~rsWss~~d~~i~~Dek~e~K~   87 (970)
T COG5656          14 DADAGKRTIAEAMLKDLEKQPG------FVMALLHICSKDEGDLNVKLSAAIYFKNKIIRSWSSKRDDGIKADEKSEAKK   87 (970)
T ss_pred             ccCcchhhHHHHHHHHhhcCCc------HHHHHHHHHhhccCCchhhHHHHHHHhhhhhhhhhhcccCCCCCcccHHHHH
Confidence            5788999999988888766422      2222222223332 33334 34443322221   1     1    1233677


Q ss_pred             HHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcC--hh----
Q 009975           97 ELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLE--PQ----  170 (521)
Q Consensus        97 ~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~--~~----  170 (521)
                      .++..+...+....-..|..-...+..+.+.--+...|. +.|....++.+++..+-..+.-++..+++...  -.    
T Consensus        88 ~lienil~v~l~sp~~tr~~l~ail~~I~seD~ps~~wg-l~p~~~nll~s~ea~~vy~gLlcl~elfkayRwk~ndeq~  166 (970)
T COG5656          88 YLIENILDVFLYSPEVTRTALNAILVNIFSEDKPSDLWG-LFPKAANLLRSSEANHVYTGLLCLEELFKAYRWKYNDEQV  166 (970)
T ss_pred             HHHHHHHHHHhcCCchHHHHHHHHHHHhccccCchhhcc-cchHHHHhhcccchhHHHHHHHHHHHHHHHHhhhccchHh
Confidence            777777776655433444333333333433333345666 88999999999998888889999999887532  11    


Q ss_pred             ---hhhhhhHHHHHHhcC---C-CCh---HHHHHHHHHHHHHHHH-hCCCccc-cchHHH---HHHhcCC--------Ch
Q 009975          171 ---DCVAHILPVIVNFSQ---D-KSW---RVRYMVANQLYELCEA-VGPEPTR-MDLVPA---YVRLLRD--------NE  227 (521)
Q Consensus       171 ---~~~~~l~~~l~~~~~---d-~~~---~vR~~~~~~l~~i~~~-~~~~~~~-~~l~~~---l~~~l~d--------~~  227 (521)
                         .....++|++.+.-.   + .+.   +.-+-..+.+...+.. ++..... ..+.+.   ....++-        -+
T Consensus       167 di~~li~alfpile~~g~nl~s~~ny~s~e~l~LILk~fKsvcy~~LP~~lsa~e~f~sw~ql~l~i~qkplp~evlsld  246 (970)
T COG5656         167 DILMLITALFPILEKVGGNLESQGNYGSVETLMLILKSFKSVCYYSLPDFLSAIETFSSWFQLSLRILQKPLPNEVLSLD  246 (970)
T ss_pred             hHHHHHHHhhHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHhhCCHHHccchhhHHHHHHHHHHHcCCCCHHHhccC
Confidence               122335666655332   1 222   2222222222222211 1111111 112221   1121110        12


Q ss_pred             HH---------HHHHHHHhHHHHHhhhCHH-----------HHHHhhhHHHHHh-c-------cCCcHHHHHHHHHHHHc
Q 009975          228 AE---------VRIAAAGKVTKFCRILNPE-----------LAIQHILPCVKEL-S-------SDSSQHVRSALASVIMG  279 (521)
Q Consensus       228 ~~---------vr~~a~~~l~~l~~~~~~~-----------~~~~~~~~~l~~~-~-------~d~~~~vr~~~~~~l~~  279 (521)
                      ++         +++.|...+.++....+..           .+.. ++|.+.+. +       +..=|.. -..+..+..
T Consensus       247 pevRs~~~wvKckKWa~ynLyR~fqRy~k~s~~~~y~~f~~~f~t-~vp~il~tffkqie~wgqgqLWls-d~~LYfi~~  324 (970)
T COG5656         247 PEVRSLSKWVKCKKWAAYNLYRSFQRYIKKSYKKSYLSFYITFMT-RVPMILATFFKQIEEWGQGQLWLS-DIELYFIDF  324 (970)
T ss_pred             hhhccccchhhhhHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhcCCeecc-hHHHHHHHH
Confidence            33         3567777777776655432           1111 33333211 1       1111111 111112222


Q ss_pred             cccc----------cChHH---HHHhHHHHHHH------hh-cCCChHHHHH-------------HHHHHHHhhhhhchh
Q 009975          280 MAPL----------LGKDA---TIEQLLPIFLS------LL-KDEFPDVRLN-------------IISKLDQVNQVIGID  326 (521)
Q Consensus       280 i~~~----------~~~~~---~~~~l~~~l~~------~l-~d~~~~vr~~-------------a~~~l~~~~~~~~~~  326 (521)
                      +...          +++..   ....++|.+..      ++ .|++..+|+.             |+..+-.....-+.+
T Consensus       325 Fve~cv~~d~tw~l~ePhlq~ii~~vIfPllc~see~eElfEnDp~eyirry~df~d~g~spdlaal~fl~~~~sKrke~  404 (970)
T COG5656         325 FVELCVDADQTWRLMEPHLQYIISGVIFPLLCLSEEEEELFENDPDEYIRRYYDFFDNGLSPDLAALFFLIISKSKRKEE  404 (970)
T ss_pred             HHHHHhhhHhhHhhhccHHHHHHHhhhhhhcCCChhhHHHHhcCHHHHHHHhcchhcCCCChhHHHHHHHHHHhcccchh
Confidence            2111          11110   11223333211      11 1333344432             222222222222333


Q ss_pred             hHhhhHHHHHHHHhc-----C---CChHHHHHHHHHhHHHHhhhChh-----hhHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 009975          327 LLSQSLLPAIVELAE-----D---RHWRVRLAIIEYIPLLASQLGVG-----FFDDKLGALCMQWLQDKVYSIRDAAANN  393 (521)
Q Consensus       327 ~~~~~~~~~l~~~~~-----~---~~~~vr~~~~~~l~~l~~~~~~~-----~~~~~l~~~l~~~l~d~~~~vr~~a~~~  393 (521)
                      .+ +.+++.+...++     +   .+.+-.+.++..+..+...+.+.     .+...+++.+...++++.--.|..|++.
T Consensus       405 Tf-qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~  483 (970)
T COG5656         405 TF-QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEF  483 (970)
T ss_pred             hh-hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHH
Confidence            33 677888777651     2   23455566666666666543332     2334566777777889999999999999


Q ss_pred             HHHHHHHhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccCh-HHHh---hcHHHHHHhhcCCCCc
Q 009975          394 LKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS-EITC---SRLLPVVINASKDRVP  462 (521)
Q Consensus       394 l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~-~~~~---~~il~~l~~~l~d~~~  462 (521)
                      +..+...+....+..++.....+.+++.+..++..|+.++..+...... +.+.   +..+..++.+-++=.-
T Consensus       484 is~~eeDfkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLSn~fei  556 (970)
T COG5656         484 ISTIEEDFKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLSNTFEI  556 (970)
T ss_pred             HHHHHHhcccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhcccccc
Confidence            9999777766656666777777888888899999999999988753321 2223   3344445555444333

>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]

Probab=95.69  E-value=1.8  Score=40.10  Aligned_cols=242  Identities=15%  Similarity=0.132  Sum_probs=107.4

Q ss_pred             HHHHHHHHHccccccChHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHh---------
Q 009975          270 RSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELA---------  340 (521)
Q Consensus       270 r~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~---------  340 (521)
                      +.-+.+.++++.+.++.-  ....+..-+.++.|.+-.||..|+..|+.+++.   +.+ ..+.|.+.+++         
T Consensus        41 k~lasq~ip~~fk~fp~l--a~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~---d~~-~rv~d~l~qLLnk~sl~~Lf  114 (460)
T KOG2213|consen   41 KRLASQFIPRFFKHFPSL--ADEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKG---DAL-SRVNDVLVQLLNKASLTGLF  114 (460)
T ss_pred             HHHHHHHHHHHHhhCchh--hhHHHHhhhccccccchhhHHHHHhccchhccC---chh-hhhHHHHHHHHHHHHHHHHH
Confidence            344444555544444321  122344444555555555555555555555543   111 11222222211         


Q ss_pred             ---cCCChHHHHHHHHHhHHHHhhhChh----hhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHh---CHHHHHhhh
Q 009975          341 ---EDRHWRVRLAIIEYIPLLASQLGVG----FFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEF---GPEWAMQHI  410 (521)
Q Consensus       341 ---~~~~~~vr~~~~~~l~~l~~~~~~~----~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~---~~~~~~~~l  410 (521)
                         +-.+..+|..++..+..=...++.+    ....+++..+...+.|-..+-=...+..|+.+-..-   |.. -.+.+
T Consensus       115 ~~~~~~D~~irek~l~fi~tKl~~l~~e~L~kevE~~iv~eikkal~dVtgeef~lfm~~L~~lk~~~~k~~~a-~lqeL  193 (460)
T KOG2213|consen  115 GQIEVGDEQIREKVLKFIRTKLITLKGEVLTKEVERHIVDEIKKALEDVTGEEFTLFMDILASLKSLQTKAGEA-RLQEL  193 (460)
T ss_pred             hhhhhhhHHHHHHHHHHHHHHhhcccHHHhhhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhcccCCCCHH-HHHHH
Confidence               1124455555555544333233322    234455555666666644442222333333332111   111 12223


Q ss_pred             HHHHHh---h--hcCcchHHHHHHHHHHHH----hhcccChHHHhhcHHHHHHhhcCCC-CchHHHHHHHHHHHHHhhhc
Q 009975          411 TPQVLE---M--INNPHYLYRMTILRAISL----LAPVMGSEITCSRLLPVVINASKDR-VPNIKFNVAKVLQSLIPIVD  480 (521)
Q Consensus       411 ~~~l~~---~--l~~~~~~~r~~a~~~l~~----l~~~~~~~~~~~~il~~l~~~l~d~-~~~VR~~a~~~l~~~~~~~~  480 (521)
                      ......   .  ++-++...-...+.++..    ++.......|..++=..++..--|. ....+...+++|..|.... 
T Consensus       194 a~~~e~~a~ldaf~~sD~d~VdRfisCl~~AvPfFargapSskf~~y~n~~~ip~~fdkl~e~rkL~lLK~lAEMss~t-  272 (460)
T KOG2213|consen  194 AEEQEGLADLDAFNVSDADYVDRFISCLLMAVPFFARGAPSSKFVEYLNKHIIPHHFDKLTEERKLDLLKALAEMSSYT-  272 (460)
T ss_pred             HHHHhhhhccCcccCCChHHHHHHHHHHHHhhhhhhcCCchhHHHHHHHhhhcccccccchHHHHHHHHHHHHHhCccc-
Confidence            322221   1  222344443444444444    4443333333333222222222232 2356668888888888765 


Q ss_pred             hHHHHhhHHHHHHHh------cCCCCccHHHHHHHHHHHHHHhhc
Q 009975          481 QSMVEKTIRPCLVEL------TEDPDVDVRFFATQAIQSIDHVMM  519 (521)
Q Consensus       481 ~~~~~~~~~~~l~~l------~~D~~~~vr~~a~~al~~l~~~~~  519 (521)
                      ......+.+|.+.++      +.|.-++-.+.-.+++..+-+.++
T Consensus       273 taq~a~q~Lpsi~elLk~yMpa~kt~ee~~fsyvEClly~~h~Lg  317 (460)
T KOG2213|consen  273 TAQAARQMLPSIVELLKEYMPAPKTGEEMQFSYVECLLYALHHLG  317 (460)
T ss_pred             hHHHHHHHHHHHHHHHHHhcccCCccHHHHHHHHHHHHHHHHHHh
Confidence            333335556655553      346666666777777766665544

>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length

Probab=95.68  E-value=0.1  Score=42.68  Aligned_cols=74  Identities=11%  Similarity=0.233  Sum_probs=47.5

Q ss_pred             HHHHhhhHHHHHhhhcCcc-hHHHHHHHHHHHHhhcccCh--HHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHh
Q 009975          404 EWAMQHITPQVLEMINNPH-YLYRMTILRAISLLAPVMGS--EITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIP  477 (521)
Q Consensus       404 ~~~~~~l~~~l~~~l~~~~-~~~r~~a~~~l~~l~~~~~~--~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~  477 (521)
                      +++....+..|...++|+. ...+..++.++..+.+..|.  -.|.+.++|.++..++...+..|.....-|+.+..
T Consensus        81 e~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv~  157 (160)
T PF11865_consen   81 EYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLVS  157 (160)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            4455566777777777765 33444666666666654443  34667788888887776666777777666666553

It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].

>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins []

Probab=95.67  E-value=0.44  Score=40.51  Aligned_cols=162  Identities=16%  Similarity=0.165  Sum_probs=85.2

Q ss_pred             HHHHHHhHHHHhhhChh--hhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCcchHHH
Q 009975          349 LAIIEYIPLLASQLGVG--FFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYR  426 (521)
Q Consensus       349 ~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r  426 (521)
                      ..++..++.+...+|..  .+...++..+..+-.+++...|..+-.+++..+..+|++.+.+ ++|.-.+. .+....-|
T Consensus        18 ~~vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~amGpe~vL~-~lPLnl~~-~~~~~~~r   95 (198)
T PF08161_consen   18 PEVLNVLSALFEKLGERSSPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRAMGPEQVLS-ILPLNLDN-ADDSQPGR   95 (198)
T ss_pred             HHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHCCHHHHHH-HCCCCccC-CCcCCccc
Confidence            34445555555555543  2223344444555566667888888888988888888875542 33321111 22222334


Q ss_pred             HHHHHHHHHhhcccChHHHhhcHHHHHHhhcC------CCCchHHHHHHHHH-HHH---Hhhh--ch----HHHHhhHHH
Q 009975          427 MTILRAISLLAPVMGSEITCSRLLPVVINASK------DRVPNIKFNVAKVL-QSL---IPIV--DQ----SMVEKTIRP  490 (521)
Q Consensus       427 ~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~------d~~~~VR~~a~~~l-~~~---~~~~--~~----~~~~~~~~~  490 (521)
                      ...+-.+..-...-.-.+|.++++|..-.+-+      .....+.....+++ .++   .+.+  .+    +.| ..+-.
T Consensus        96 aWLLPlLr~~i~~~~L~fF~~~~lPla~~~~~~~~~~~~~~~~~~ak~~~~l~~QlWslLP~FC~~P~D~~~~F-~~~a~  174 (198)
T PF08161_consen   96 AWLLPLLRDHIRNASLSFFVEEFLPLARRLRQKAQKASEAGKSVEAKIYETLVQQLWSLLPGFCNYPTDLAESF-PSFAK  174 (198)
T ss_pred             chhHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhHHhcCCcccHHHHH-HHHHH
Confidence            44444444444444456677788876544311      12222222222222 112   1111  11    223 55566


Q ss_pred             HHHHhcCCCCccHHHHHHHHHHHH
Q 009975          491 CLVELTEDPDVDVRFFATQAIQSI  514 (521)
Q Consensus       491 ~l~~l~~D~~~~vr~~a~~al~~l  514 (521)
                      .|.+++.|. ++.|...+.++..|
T Consensus       175 ~L~~~L~~~-~~LR~~Ic~aL~~L  197 (198)
T PF08161_consen  175 LLGNALYDQ-PDLRPIICQALRRL  197 (198)
T ss_pred             HHHHHHhcC-cchHHHHHHHHHHH
Confidence            666666664 79999999999876

>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex

Probab=95.66  E-value=0.34  Score=45.45  Aligned_cols=141  Identities=13%  Similarity=0.172  Sum_probs=80.8

Q ss_pred             HHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCC-------ChhHHHHHHHHHHHHhhh-
Q 009975           95 KTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDD-------QDSVRLLAVEGCAALGKL-  166 (521)
Q Consensus        95 ~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~-------~~~vr~~a~~~l~~l~~~-  166 (521)
                      ....+..+.+.+.+.+...|..|...|..       +.-...++|.+.++..+.       +...-...+++...+..+ 
T Consensus       176 lq~yf~~It~a~~~~~~~~r~~aL~sL~t-------D~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~  248 (343)
T cd08050         176 LQLYFEEITEALVGSNEEKRREALQSLRT-------DPGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNP  248 (343)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHhcc-------CCCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCC
Confidence            44555666666666777788777766543       333455666666655433       222233334444444433 


Q ss_pred             -cChhhhhhhhHHHHHHhc----------CCCChHHHHHHHHHHHHHHHHhCCCcc--ccchHHHHHHhcCCCh--HHHH
Q 009975          167 -LEPQDCVAHILPVIVNFS----------QDKSWRVRYMVANQLYELCEAVGPEPT--RMDLVPAYVRLLRDNE--AEVR  231 (521)
Q Consensus       167 -~~~~~~~~~l~~~l~~~~----------~d~~~~vR~~~~~~l~~i~~~~~~~~~--~~~l~~~l~~~l~d~~--~~vr  231 (521)
                       +.-+.+...++|.+..++          .+..|.+|..++..++.+++.++....  .+.+...+.+.+.|+.  ....
T Consensus       249 ~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~  328 (343)
T cd08050         249 NLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTH  328 (343)
T ss_pred             CCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchh
Confidence             222345556777766543          246688888888888888887775532  2344445555555543  2336


Q ss_pred             HHHHHhHHHHH
Q 009975          232 IAAAGKVTKFC  242 (521)
Q Consensus       232 ~~a~~~l~~l~  242 (521)
                      ..|+..|..++
T Consensus       329 YGAi~GL~~lG  339 (343)
T cd08050         329 YGAIVGLSALG  339 (343)
T ss_pred             hHHHHHHHHhC
Confidence            67777766654

The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as

>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised

Probab=95.56  E-value=2.6  Score=41.15  Aligned_cols=76  Identities=17%  Similarity=0.202  Sum_probs=52.2

Q ss_pred             hHHHHHHHHHHHHhhhcChhhhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCccc---cchHHHHHHhcCCC
Q 009975          151 SVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR---MDLVPAYVRLLRDN  226 (521)
Q Consensus       151 ~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~---~~l~~~l~~~l~d~  226 (521)
                      ..|..|.++|+.+...++.+......-+.+...+++++..=|..++-.+.+.+.........   +.+.+.+...+.++
T Consensus       102 r~Ri~aA~ALG~l~~~~~~~~~~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~L~~~  180 (441)
T PF12054_consen  102 RARIAAAKALGLLLSYWPESSLQEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEILENP  180 (441)
T ss_pred             HHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHHHcCC
Confidence            45888888888888888655444444456788888888888888888888888766543332   35556666666543

This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=95.54  E-value=0.062  Score=43.90  Aligned_cols=130  Identities=17%  Similarity=0.247  Sum_probs=85.7

Q ss_pred             CchhHHHHHHHHHHHHHHhhcChhHHHHhHHHHHHHhhcCCCCcchhhhhhhhhhhcCCCChH-----HHHHHHHHHHHh
Q 009975           31 VEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI-----LKTELRSIYTQL  105 (521)
Q Consensus        31 ~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~p~i~~~~~~~~~~~r~~~~~~~~~~~~~~~~~-----~~~~l~~~l~~l  105 (521)
                      ...+++|..+.-.+..+. ....+...+.+-.++..+..+...+....++..+..+++..++-     ..+.+++.+..+
T Consensus        16 ~~~~~~r~~a~v~l~k~l-~~~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~   94 (157)
T PF11701_consen   16 RQPEEVRSHALVILSKLL-DAAREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPL   94 (157)
T ss_dssp             TTSCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHH
T ss_pred             CCCHhHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHH
Confidence            456688999998988886 34455566788888888877655556677778888888776543     234456666666


Q ss_pred             cC--CCChHHHHHHHHhHHHHHHhhC-chhhHHHHHHHHHHhhc-CCChh-HHHHHHHHHH
Q 009975          106 CQ--DDMPMVRRSAASNLGKFAATVE-PAHLKTDIMSIFEDLTQ-DDQDS-VRLLAVEGCA  161 (521)
Q Consensus       106 ~~--~~~~~vr~~a~~~l~~l~~~~~-~~~~~~~l~~~l~~l~~-d~~~~-vr~~a~~~l~  161 (521)
                      +.  .++..+...+++.+..-+..-. ...+.....+++.++.+ ++++. +|..|.-.|.
T Consensus        95 ~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~  155 (157)
T PF11701_consen   95 ASRKSKDRKVQKAALELLSAACIDKSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLC  155 (157)
T ss_dssp             HH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHH
T ss_pred             HhcccCCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHh
Confidence            66  6677888888887776542211 13355667788888884 44555 6776665553

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=95.53  E-value=7.9  Score=46.58  Aligned_cols=153  Identities=15%  Similarity=0.147  Sum_probs=103.7

Q ss_pred             HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHh----CHH------HHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhc
Q 009975          369 DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEF----GPE------WAMQHITPQVLEMINNPHYLYRMTILRAISLLAP  438 (521)
Q Consensus       369 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~----~~~------~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~  438 (521)
                      ..+++.+...+...+..++.++..++..+....    |..      .+.+.+++.+....-++.|.-|...+..++.+..
T Consensus       983 ~i~ldal~~~l~~~~~~~~~~g~~~l~~i~~~~~~~l~~~~~~~~lpi~~~l~~k~~~lCy~~~wy~k~gG~~gI~~l~~ 1062 (3550)
T KOG0889|consen  983 STFLDALVESLSHENSEMRPAGVRALKVIFSTSTLILGSPERAFKLPMFEYLLEKLCHLCYDSTWYAKDGGVNGIKCLIE 1062 (3550)
T ss_pred             HHHHHHHHHHHhccchhhhhhHHHHHHHHHHHHHHhhcCcchhhccchHHHHHHHHHHHhccHhHHHHcCCCceeeeehh
Confidence            457788888999999999999999988876543    321      2335677777888889999999999999999888


Q ss_pred             ccChHH---HhhcHHHHHHhhcCCCCchHHH----HHHHHHHHHHhhh----ch----HHHHhhHHHHHHHhcCCCCccH
Q 009975          439 VMGSEI---TCSRLLPVVINASKDRVPNIKF----NVAKVLQSLIPIV----DQ----SMVEKTIRPCLVELTEDPDVDV  503 (521)
Q Consensus       439 ~~~~~~---~~~~il~~l~~~l~d~~~~VR~----~a~~~l~~~~~~~----~~----~~~~~~~~~~l~~l~~D~~~~v  503 (521)
                      .+....   +...++..++..+.|....+..    .+-..+..+....    ..    ......+...+..-+.+++..|
T Consensus      1063 ~~~~~~l~d~~~d~~~~l~fvl~d~~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~lv~eL~npN~~V 1142 (3550)
T KOG0889|consen 1063 SMPSLWLLDFQVDILKALFFVLKDTESEVSSLPLDEAKDILMDILRVIFIDELAEEERAKSAMNVFSPLVLELFNPNSDV 1142 (3550)
T ss_pred             hchHHHHHHHHHHHhhhHHHhhcCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcCCchHH
Confidence            766433   3455666777777777655554    2333333332221    11    1222333444444457778899


Q ss_pred             HHHHHHHHHHHHHhhccC
Q 009975          504 RFFATQAIQSIDHVMMSS  521 (521)
Q Consensus       504 r~~a~~al~~l~~~~~~~  521 (521)
                      |..+..++..+.+..+.|
T Consensus      1143 R~~~~~~L~~i~~~s~~~ 1160 (3550)
T KOG0889|consen 1143 REFSQKLLRLISELSGKS 1160 (3550)
T ss_pred             HHHHHHHHHHHHHHcCCc
Confidence            999999999998887553

>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]

Probab=95.45  E-value=4.4  Score=43.16  Aligned_cols=129  Identities=17%  Similarity=0.123  Sum_probs=89.9

Q ss_pred             cCCChHHHHHHHHHhHHHHhhhChhhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhC----HHHHHhhhHHHHHh
Q 009975          341 EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFG----PEWAMQHITPQVLE  416 (521)
Q Consensus       341 ~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~----~~~~~~~l~~~l~~  416 (521)
                      .|-.+.+|..+++.|+...+.++.-++.+..+..+-=.|.|.+..||..++++|..+...-.    ...+.+..-..+.+
T Consensus       297 RDV~~~IRaiCiqeLgiWi~~yP~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK~RIVe  376 (1048)
T KOG2011|consen  297 RDVDPDIRAICIQELGIWIKSYPEIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFKDRIVE  376 (1048)
T ss_pred             ccCchHHHHHHHHHHHHHHHhccHHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHH
Confidence            67889999999999999999988877666666665556889999999999999999886521    12233445555566


Q ss_pred             hh-cCcchHHHHHHHHHHHHhhc--ccChHHHhhcHHHHHHhhcCCCCchHHHHHHHHHHH
Q 009975          417 MI-NNPHYLYRMTILRAISLLAP--VMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQS  474 (521)
Q Consensus       417 ~l-~~~~~~~r~~a~~~l~~l~~--~~~~~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~  474 (521)
                      +. .|-+..||...+..+.....  .+..+.     +..+..++-|.++.++.+|...+..
T Consensus       377 Madrd~~~~Vrav~L~~~~~~~~~g~L~d~d-----i~~Vy~Li~d~~r~~~~aa~~fl~~  432 (1048)
T KOG2011|consen  377 MADRDRNVSVRAVGLVLCLLLSSSGLLSDKD-----ILIVYSLIYDSNRRVAVAAGEFLYK  432 (1048)
T ss_pred             HHhhhcchhHHHHHHHHHHHHhcccccChhH-----HHHHHHHHhccCcchHHHHHHHHHH
Confidence            65 45566777766655554432  233322     3346677778888998888877644

>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p []

Probab=95.44  E-value=0.51  Score=43.00  Aligned_cols=40  Identities=15%  Similarity=0.261  Sum_probs=29.9

Q ss_pred             chHHHHHHHHHHHHhhcccChHH--HhhcHHHHHHhhcCCCC
Q 009975          422 HYLYRMTILRAISLLAPVMGSEI--TCSRLLPVVINASKDRV  461 (521)
Q Consensus       422 ~~~~r~~a~~~l~~l~~~~~~~~--~~~~il~~l~~~l~d~~  461 (521)
                      ..+++...+..+..+...+|...  +.+.++|.+.+.+.++.
T Consensus       237 ~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~~l~~~l~npf  278 (282)
T PF10521_consen  237 YPRLRTVLLQQLPPIIDELGISSVKHLQRIIPVLSQILENPF  278 (282)
T ss_pred             chhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCC
Confidence            57888888888888888777654  45778888887777653

>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length

Probab=95.27  E-value=2.9  Score=39.94  Aligned_cols=171  Identities=10%  Similarity=0.040  Sum_probs=89.2

Q ss_pred             HHHHHHHHHHhcC-CCChHHHHHHHHhHHHHHHhhCchh--hHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcChhh
Q 009975           95 KTELRSIYTQLCQ-DDMPMVRRSAASNLGKFAATVEPAH--LKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQD  171 (521)
Q Consensus        95 ~~~l~~~l~~l~~-~~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~  171 (521)
                      ...++..+..... -++..+-......+..+....+..-  ....-+|.+...+-+....+|..|..++..+...++++.
T Consensus       131 ~~~l~~~l~~i~~~~~s~si~~erL~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~  210 (372)
T PF12231_consen  131 VERLLAALHNIKNRFPSKSIISERLNIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNK  210 (372)
T ss_pred             HHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhH
Confidence            4445555555443 4456666777777777776665421  223344555555556667778877777766666665542


Q ss_pred             hhhh-hHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHH
Q 009975          172 CVAH-ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELA  250 (521)
Q Consensus       172 ~~~~-l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~  250 (521)
                      .... +...+.....+.  .+-...++-+..+...-+......++...+..++.+..                 +..-..
T Consensus       211 ~~s~~~~~~~~~~~~~~--~~~~~~~~~L~~mi~~~~~~~~a~~iW~~~i~LL~~~~-----------------~~~w~~  271 (372)
T PF12231_consen  211 ELSKSVLEDLQRSLENG--KLIQLYCERLKEMIKSKDEYKLAMQIWSVVILLLGSSR-----------------LDSWEH  271 (372)
T ss_pred             HHHHHHHHHhccccccc--cHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHhCCch-----------------hhccHh
Confidence            2222 222222222222  34444444455554433333333455555555554331                 011122


Q ss_pred             HHhhhHHHHHhccCCcHHHHHHHHHHHHcccccc
Q 009975          251 IQHILPCVKELSSDSSQHVRSALASVIMGMAPLL  284 (521)
Q Consensus       251 ~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~  284 (521)
                      .+..+......+++.++.+|..+..+...+....
T Consensus       272 ~n~wL~v~e~cFn~~d~~~k~~A~~aW~~liy~~  305 (372)
T PF12231_consen  272 LNEWLKVPEKCFNSSDPQVKIQAFKAWRRLIYAS  305 (372)
T ss_pred             HhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence            3445555566677777778888777777766533

Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.

>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length

Probab=95.22  E-value=0.15  Score=41.75  Aligned_cols=147  Identities=13%  Similarity=0.103  Sum_probs=88.0

Q ss_pred             HHHHHHHHHHcCC-CcHHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhh-hcCcchHHHHHHHHHHHHhhcccChHHHh
Q 009975          369 DKLGALCMQWLQD-KVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEM-INNPHYLYRMTILRAISLLAPVMGSEITC  446 (521)
Q Consensus       369 ~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~-l~~~~~~~r~~a~~~l~~l~~~~~~~~~~  446 (521)
                      +.+++.+.+.++. .++.+|..+++++|.+.. +.+..+. .+....... ..+.+...........+ .. ..+.+.+.
T Consensus         9 P~LL~~L~~iLk~e~s~~iR~E~lr~lGilGA-LDP~~~k-~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~-~~~ee~y~   84 (160)
T PF11865_consen    9 PELLDILLNILKTEQSQSIRREALRVLGILGA-LDPYKHK-SIQKSLDSKSSENSNDESTDISLPMMG-IS-PSSEEYYP   84 (160)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHhhhccc-cCcHHHh-cccccCCccccccccccchhhHHhhcc-CC-CchHHHHH
Confidence            5678888887764 469999999999987753 2222111 000000000 01111111111111100 00 12345556


Q ss_pred             hcHHHHHHhhcCCCCc-hHHHHHHHHHHHHHhhhchH--HHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHHhhc
Q 009975          447 SRLLPVVINASKDRVP-NIKFNVAKVLQSLIPIVDQS--MVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMM  519 (521)
Q Consensus       447 ~~il~~l~~~l~d~~~-~VR~~a~~~l~~~~~~~~~~--~~~~~~~~~l~~l~~D~~~~vr~~a~~al~~l~~~~~  519 (521)
                      ...+..+.+.++|+.- .-..+++.++-.+.+..|..  .+.+.++|.+.+.....+...|.....-+..|..+++
T Consensus        85 ~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv~ivk  160 (160)
T PF11865_consen   85 TVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLVSIVK  160 (160)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHhC
Confidence            6778888999998743 34557788888887766654  4558899999988776666888888888888877653

It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].

>KOG1848 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.17  E-value=1.3  Score=47.72  Aligned_cols=218  Identities=17%  Similarity=0.179  Sum_probs=129.4

Q ss_pred             HHhcCCCChHHHHHHHHhHHHHHHhhCchh--hHHHHHHHHHHhhcCC---ChhHHHHHHHHHHHHhhhcC---hhhhhh
Q 009975          103 TQLCQDDMPMVRRSAASNLGKFAATVEPAH--LKTDIMSIFEDLTQDD---QDSVRLLAVEGCAALGKLLE---PQDCVA  174 (521)
Q Consensus       103 ~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~l~~d~---~~~vr~~a~~~l~~l~~~~~---~~~~~~  174 (521)
                      ......+..+||....+++-.+.+..|+-.  -|+.+.+++.......   ...+-..+..++.-+..-+-   +.++..
T Consensus       848 v~~~s~~~~evr~~sl~~l~silet~ge~ll~~w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci~  927 (1610)
T KOG1848|consen  848 VSDNSSRGVEVRISSLEALVSILETVGEHLLHGWQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCIL  927 (1610)
T ss_pred             HHHhcCccceeeHHHHHHHHHHHhccchhhccccHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHHH
Confidence            345566667889888999999988777521  2666777766554432   33445555666666554322   234555


Q ss_pred             hhHHHHHHhcC-CCChHHHHHHHHHHHHHHHHhCC-----------------------------CccccchHHHHHHhcC
Q 009975          175 HILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGP-----------------------------EPTRMDLVPAYVRLLR  224 (521)
Q Consensus       175 ~l~~~l~~~~~-d~~~~vR~~~~~~l~~i~~~~~~-----------------------------~~~~~~l~~~l~~~l~  224 (521)
                      .++..+..++. ..+..+-..+...+-.+.+.+..                             +..+-.++..+.+++.
T Consensus       928 ~lidtl~~fs~QktdlNISltAi~lfWtvsDfl~~km~S~sed~~~~~~~e~~~ss~~~~~~l~e~lwi~ll~~L~~~~~ 1007 (1610)
T KOG1848|consen  928 DLIDTLLVFSRQKTDLNISLTAIGLFWTVSDFLKNKMFSTSEDSCAYNSVEDLYSSMKSKEILPEVLWIMLLVHLADLCE 1007 (1610)
T ss_pred             HHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHhhhhccchhhhhhcchhhhcccccchhhhhhHHHHHHHHHHHHHhc
Confidence            56666655543 34444555555544444332210                             1112236667778889


Q ss_pred             CChHHHHHHHHHhHHHHHhhhC----HHHHHHhhhHHHHHhcc------CCcHHH-------HHHHHHHHHccccccChH
Q 009975          225 DNEAEVRIAAAGKVTKFCRILN----PELAIQHILPCVKELSS------DSSQHV-------RSALASVIMGMAPLLGKD  287 (521)
Q Consensus       225 d~~~~vr~~a~~~l~~l~~~~~----~~~~~~~~~~~l~~~~~------d~~~~v-------r~~~~~~l~~i~~~~~~~  287 (521)
                      |+-.+||..|++++-++....|    +..+..-++..+..++.      -++|.-       -...+-.++.+++.+...
T Consensus      1008 dsr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngkeiqkqwtet~~ltisgIaklf~e~ 1087 (1610)
T KOG1848|consen 1008 DSRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKEIQKQWTETSCLTISGIAKLFSEN 1087 (1610)
T ss_pred             cchHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccchhhhcchhHhhhhhhhhhhhHHHHHHHHHHH
Confidence            9999999999999988877653    43333333333333332      011211       123445566666655432


Q ss_pred             H-----------HHHhHHHHHHHhhcCCChHHHHHHHHHHHHhh
Q 009975          288 A-----------TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVN  320 (521)
Q Consensus       288 ~-----------~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~  320 (521)
                      .           ..+.++..+..+..+.++++..++..++..+.
T Consensus      1088 fk~llnln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qell 1131 (1610)
T KOG1848|consen 1088 FKLLLNLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQELL 1131 (1610)
T ss_pred             HHHHHhcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHH
Confidence            2           24677888888888999999999999987764

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=95.09  E-value=3.2  Score=39.44  Aligned_cols=149  Identities=15%  Similarity=0.091  Sum_probs=87.1

Q ss_pred             hHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcCh-hhhhh-hhHHHHH-HhcCC-CChHHHHHHHHHHHHHHHHh-C
Q 009975          133 LKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP-QDCVA-HILPVIV-NFSQD-KSWRVRYMVANQLYELCEAV-G  207 (521)
Q Consensus       133 ~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~-~~~~~-~l~~~l~-~~~~d-~~~~vR~~~~~~l~~i~~~~-~  207 (521)
                      .+..+.+-+..++-+++..||.++.+++..+...... ....+ ++--++. .+..| ++..-|.+|.+.+..+...- +
T Consensus        22 ~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~  101 (371)
T PF14664_consen   22 VLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKG  101 (371)
T ss_pred             hHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCC
Confidence            3444455555433344489999999999887654321 11111 1111222 23333 45667899999998888763 2


Q ss_pred             CCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhhhHHHHHhccCCcHHHHHHHHHHHHccc
Q 009975          208 PEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMA  281 (521)
Q Consensus       208 ~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~  281 (521)
                      ....+..++..++...+++++..|..|++++.+++-.-+.-...-.-+..+.+.+.|....+-..++.++-.+.
T Consensus       102 ~~~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lL  175 (371)
T PF14664_consen  102 PKEIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPELVAECGGIRVLLRALIDGSFSISESLLDTLLYLL  175 (371)
T ss_pred             cccCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHh
Confidence            34445678888888899999999999999998887643322222222344444444444334444444444443

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.03  E-value=2.5  Score=37.91  Aligned_cols=101  Identities=16%  Similarity=0.177  Sum_probs=65.4

Q ss_pred             HHHHhcCCCChHHHHHHHHhHHHHHHhhCch---hhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcC-hhhhhhhh
Q 009975          101 IYTQLCQDDMPMVRRSAASNLGKFAATVEPA---HLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLE-PQDCVAHI  176 (521)
Q Consensus       101 ~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~-~~~~~~~l  176 (521)
                      .+..++.+.+|.||+.|+..+..+... +..   ......++.+.++..+..+  ...|+.++.+++..-. .+...+.+
T Consensus         7 elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~ll~~~   83 (353)
T KOG2973|consen    7 ELVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKLLQDL   83 (353)
T ss_pred             HHHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHHHHHH
Confidence            456778889999999999888777655 221   2345678888888888777  4456677777765421 12223335


Q ss_pred             HHHHHHhcCCCChHHHHHHHHHHHHHHH
Q 009975          177 LPVIVNFSQDKSWRVRYMVANQLYELCE  204 (521)
Q Consensus       177 ~~~l~~~~~d~~~~vR~~~~~~l~~i~~  204 (521)
                      +..+...+.|+.+..-...+..+.++++
T Consensus        84 ~k~l~~~~~~p~~~lad~~cmlL~NLs~  111 (353)
T KOG2973|consen   84 LKVLMDMLTDPQSPLADLICMLLSNLSR  111 (353)
T ss_pred             HHHHHHHhcCcccchHHHHHHHHHHhcc
Confidence            5666666677755555666666666654

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.98  E-value=2.6  Score=37.82  Aligned_cols=59  Identities=24%  Similarity=0.328  Sum_probs=43.3

Q ss_pred             CCCCchHHHHHHHHHHHHHhh-hchHHHH-hhHHHHHHHh-cCCCCccHHHHHHHHHHHHHH
Q 009975          458 KDRVPNIKFNVAKVLQSLIPI-VDQSMVE-KTIRPCLVEL-TEDPDVDVRFFATQAIQSIDH  516 (521)
Q Consensus       458 ~d~~~~VR~~a~~~l~~~~~~-~~~~~~~-~~~~~~l~~l-~~D~~~~vr~~a~~al~~l~~  516 (521)
                      .++++.||...++++-.++.. -|.+.+. ..+.|++..+ ...+++++|.......+-+..
T Consensus       254 RepdpdIrk~llEai~lLcaT~~GRe~lR~kgvYpilRElhk~e~ded~~~ace~vvq~Lv~  315 (353)
T KOG2973|consen  254 REPDPDIRKMLLEALLLLCATRAGREVLRSKGVYPILRELHKWEEDEDIREACEQVVQMLVR  315 (353)
T ss_pred             CCCChHHHHHHHHHHHHHHhhhHhHHHHHhcCchHHHHHHhcCCCcHHHHHHHHHHHHHHHh
Confidence            467999999999999888753 4555554 4577777776 355889998887777766554

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=94.93  E-value=3.2  Score=38.66  Aligned_cols=205  Identities=13%  Similarity=0.141  Sum_probs=125.8

Q ss_pred             HHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhh-chh------hH---hhhHHHHHHHHhcCCChHHHHHHHHHhHHH
Q 009975          289 TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI-GID------LL---SQSLLPAIVELAEDRHWRVRLAIIEYIPLL  358 (521)
Q Consensus       289 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~-~~~------~~---~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l  358 (521)
                      ..+++++.+...+..-+.+.|+.+...+..+...- |..      .+   .+.++..+....++++-..      ..+.+
T Consensus        73 ~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial------~~g~m  146 (335)
T PF08569_consen   73 YRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIAL------NCGDM  146 (335)
T ss_dssp             HHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHH------HHHHH
T ss_pred             HHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccc------hHHHH
Confidence            35678888888888888999999888888776532 111      11   1334444444444433211      11222


Q ss_pred             HhhhC-hhhhHHH-----HHHHHHHHcCCCcHHHHHHHHHHHHHHHHHh---CHHHH---HhhhHHHHHhhhcCcchHHH
Q 009975          359 ASQLG-VGFFDDK-----LGALCMQWLQDKVYSIRDAAANNLKRLAEEF---GPEWA---MQHITPQVLEMINNPHYLYR  426 (521)
Q Consensus       359 ~~~~~-~~~~~~~-----l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~---~~~~~---~~~l~~~l~~~l~~~~~~~r  426 (521)
                      ...+- .+.+...     ..--+..+.+.++.+|-..|...+..+....   ..+++   -+.++..+..++.++||-.|
T Consensus       147 lRec~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtk  226 (335)
T PF08569_consen  147 LRECIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTK  226 (335)
T ss_dssp             HHHHTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHH
T ss_pred             HHHHHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEee
Confidence            22211 1111111     1223567788899999988888888876432   22222   24566777888999999999


Q ss_pred             HHHHHHHHHhhcccCh-H----HH-hhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhch-HH-------HHhhHHHHH
Q 009975          427 MTILRAISLLAPVMGS-E----IT-CSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ-SM-------VEKTIRPCL  492 (521)
Q Consensus       427 ~~a~~~l~~l~~~~~~-~----~~-~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~-~~-------~~~~~~~~l  492 (521)
                      ..++..+|.+...=.. .    ++ .+..+..++.+|+|+..+||..|..++..++..-.. +.       ..+.++..+
T Consensus       227 rqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~~~I~~iL~~Nr~kLl~fl  306 (335)
T PF08569_consen  227 RQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKPPPIVDILIKNREKLLRFL  306 (335)
T ss_dssp             HHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-BHHHHHHHHHTHHHHHHHH
T ss_pred             hhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHH
Confidence            9999999999842111 1    11 256788899999999999999999999998764321 11       236778888


Q ss_pred             HHhcCCC
Q 009975          493 VELTEDP  499 (521)
Q Consensus       493 ~~l~~D~  499 (521)
                      .++..|+
T Consensus       307 ~~f~~~~  313 (335)
T PF08569_consen  307 KDFHTDR  313 (335)
T ss_dssp             HTTTTT-
T ss_pred             HhCCCCC
Confidence            8887777

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes

Probab=94.89  E-value=0.61  Score=40.55  Aligned_cols=145  Identities=14%  Similarity=0.135  Sum_probs=89.2

Q ss_pred             HhHHHHHHHhhcCCCCcchhhhhhhhhhhcCCCChHHHHHHHHHHHHhcCC-CChHHHHHH-HHhHHHHHHhhCchhhHH
Q 009975           58 DWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQD-DMPMVRRSA-ASNLGKFAATVEPAHLKT  135 (521)
Q Consensus        58 ~~l~p~i~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~-~~~~vr~~a-~~~l~~l~~~~~~~~~~~  135 (521)
                      +....+..++.+++..+.|..++.++....+..++    ..++.+...+.+ ++|.+-... ...++.+....      +
T Consensus        50 ~~~~~l~~~L~~~~~~E~~~la~~il~~~~~~~~~----~~~~~~~~~~~~~~~W~~~D~~~~~~~~~~~~~~------~  119 (213)
T PF08713_consen   50 EELYELADELWESGYREERYLALLILDKRRKKLTE----EDLELLEKWLPDIDNWATCDSLCSKLLGPLLKKH------P  119 (213)
T ss_dssp             HHHHHHHHHHHCSSCHHHHHHHHHHHHHCGGG--H----HHHHHHHHCCCCCCCHHHHHHHTHHHHHHHHHHH------G
T ss_pred             hHHHHHHHHHcCCchHHHHHHHHHHhHHHhhhhhH----HHHHHHHHHhccCCcchhhhHHHHHHHHHHHHhh------H
Confidence            44555666666777777777777666554433322    255566665544 467666655 33344443321      5


Q ss_pred             HHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcChhhhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCccccch
Q 009975          136 DIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDL  215 (521)
Q Consensus       136 ~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l  215 (521)
                      ...+.+.....+++.-+|..++.++......    .....++..+.....|++..||.++.-+|..++..     .++.+
T Consensus       120 ~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~----~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~-----~~~~v  190 (213)
T PF08713_consen  120 EALELLEKWAKSDNEWVRRAAIVMLLRYIRK----EDFDELLEIIEALLKDEEYYVQKAIGWALREIGKK-----DPDEV  190 (213)
T ss_dssp             GHHHHHHHHHHCSSHHHHHHHHHCTTTHGGG----CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT------HHHH
T ss_pred             HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHh----cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHh-----CHHHH
Confidence            6778888888888888888887666444433    34456777777788888888888888877766432     12344


Q ss_pred             HHHHHH
Q 009975          216 VPAYVR  221 (521)
Q Consensus       216 ~~~l~~  221 (521)
                      .+.+.+
T Consensus       191 ~~~l~~  196 (213)
T PF08713_consen  191 LEFLQK  196 (213)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            555554

The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.

>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans)

Probab=94.86  E-value=3.1  Score=38.15  Aligned_cols=179  Identities=17%  Similarity=0.150  Sum_probs=126.2

Q ss_pred             HHHHHHHhhcCC-ChHHHHHHHHHHHHhhhhhchhhHhhh---HHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChhhhH
Q 009975          293 LLPIFLSLLKDE-FPDVRLNIISKLDQVNQVIGIDLLSQS---LLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD  368 (521)
Q Consensus       293 l~~~l~~~l~d~-~~~vr~~a~~~l~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~  368 (521)
                      +-..+.++++-. -..|-..|++....+.+.+|++.+.+.   ..|.+..++...+-.||-..+..+....-.+|. ...
T Consensus        55 v~krLaqCL~P~LPsGVH~KaLevY~~IF~~ig~~~L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~-~L~  133 (307)
T PF04118_consen   55 VSKRLAQCLNPALPSGVHQKALEVYEYIFERIGPDGLAQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGP-ALR  133 (307)
T ss_pred             HHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCHHHHHhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccH-HHH
Confidence            344445555433 257999999999999999998776432   355666666777778999998888887767777 444


Q ss_pred             HHHHH---HHHHHcCCCcHHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccC----
Q 009975          369 DKLGA---LCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMG----  441 (521)
Q Consensus       369 ~~l~~---~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~----  441 (521)
                      +.+-+   .++..+.|++.++...+...+..+...+|.+.+-+.+.-.+.     .++..|..|+..+..-.....    
T Consensus       134 p~l~~li~slLpGLede~sE~~~~~~~ll~~l~~~v~~~~F~~~lwl~ii-----~sp~~Rl~al~~l~~~l~~~~~~~~  208 (307)
T PF04118_consen  134 PCLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAVGDKYFWQCLWLCII-----TSPSRRLGALNYLLRRLPKFQNDEL  208 (307)
T ss_pred             HHHHHHHHHhccccccCCchHHHHHHHHHHHHHHhcChhHHHHHHHHHHh-----cCcchhHHHHHHHHHhCCccccccc
Confidence            44444   444557889999999999999999999987755444433333     456788888888887766444    


Q ss_pred             --h-H---HH----hhcHHHHHHhhcCCCCchHHHHHHHHHHHHHh
Q 009975          442 --S-E---IT----CSRLLPVVINASKDRVPNIKFNVAKVLQSLIP  477 (521)
Q Consensus       442 --~-~---~~----~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~  477 (521)
                        . +   .+    ..-++..+...+.|++--|++.++..|-.-.+
T Consensus       209 ~~~~~~~~~~~~~~~~Llv~al~~~L~D~~iLVqR~~LDlLl~~~P  254 (307)
T PF04118_consen  209 SLSSEEQEYCLGPDPGLLVRALCACLEDENILVQRGFLDLLLSHFP  254 (307)
T ss_pred             ccchHHHHHhcCCCccHHHHHHHHHhCCchHHHHHHHHHHHHHhCC
Confidence              1 0   01    13466788889999999999999888865443

DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].

>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=94.86  E-value=2  Score=41.73  Aligned_cols=134  Identities=15%  Similarity=0.214  Sum_probs=84.5

Q ss_pred             HHhhcCCChHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHhcCC--------ChHHHHHHHHHhHHHHhh--hChhhh
Q 009975          298 LSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDR--------HWRVRLAIIEYIPLLASQ--LGVGFF  367 (521)
Q Consensus       298 ~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~vr~~~~~~l~~l~~~--~~~~~~  367 (521)
                      .+.+.+.++..|..|+++|..=..   .    ..++|.|..++.+.        +-..-..++.....+.++  +--+.|
T Consensus       213 t~a~~g~~~~~r~eAL~sL~TDsG---L----~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~i~lepY  285 (576)
T KOG2549|consen  213 TEACTGSDEPLRQEALQSLETDSG---L----QQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPNIFLEPY  285 (576)
T ss_pred             HHHHhcCCHHHHHHHHHhhccCcc---H----HHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCccchhhH
Confidence            334445777888888877765322   1    55677777665432        111222222222222222  112445


Q ss_pred             HHHHHHHHHHHc----------CCCcHHHHHHHHHHHHHHHHHhCHHH--HHhhhHHHHHhhhcCc--chHHHHHHHHHH
Q 009975          368 DDKLGALCMQWL----------QDKVYSIRDAAANNLKRLAEEFGPEW--AMQHITPQVLEMINNP--HYLYRMTILRAI  433 (521)
Q Consensus       368 ~~~l~~~l~~~l----------~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~~~--~~~~r~~a~~~l  433 (521)
                      ...++|.++.++          .|+.|.+|..|+..+..++..++...  ....++..+.+.+.|.  .+.....++..+
T Consensus       286 lh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~~~~st~YGai~gL  365 (576)
T KOG2549|consen  286 LHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNKKPLSTHYGAIAGL  365 (576)
T ss_pred             HHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCchhhhhHHHHH
Confidence            667888887764          27889999999999999999887643  3456667777776664  578888888888


Q ss_pred             HHhhc
Q 009975          434 SLLAP  438 (521)
Q Consensus       434 ~~l~~  438 (521)
                      ..+..
T Consensus       366 ~~lg~  370 (576)
T KOG2549|consen  366 SELGH  370 (576)
T ss_pred             HHhhh
Confidence            77764

>PF14868 DUF4487: Domain of unknown function (DUF4487)

Probab=94.77  E-value=5  Score=40.13  Aligned_cols=62  Identities=16%  Similarity=0.214  Sum_probs=44.7

Q ss_pred             HHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcChhhhhhh
Q 009975          113 VRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAH  175 (521)
Q Consensus       113 vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~  175 (521)
                      +-...+..|.+++...++ ..++++-..+.+-.-.++.-....+.+++.-++.+-..+.+..+
T Consensus       244 lY~~vl~~Lctfi~~~~~-s~f~eLE~~LL~~vL~~~~l~~lLa~DvWCFlaRygtaeLc~~h  305 (559)
T PF14868_consen  244 LYQHVLVHLCTFIASLSP-SAFPELERFLLENVLHPHFLCSLLAMDVWCFLARYGTAELCAHH  305 (559)
T ss_pred             HHHHHHHHHHHHHHhCCH-HHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhcchHHHHHHH
Confidence            456777788887766554 37777777776666668888899999999999976555544444

>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism

Probab=94.73  E-value=4.4  Score=39.25  Aligned_cols=95  Identities=17%  Similarity=0.247  Sum_probs=55.5

Q ss_pred             HHHHHHHHHHHHhCHHHH---HhhhHHHHHhhhcCcchHHHHHHHHHHHHh--hccc--ChHHHhhcHHHHHHhh-cCCC
Q 009975          389 AAANNLKRLAEEFGPEWA---MQHITPQVLEMINNPHYLYRMTILRAISLL--APVM--GSEITCSRLLPVVINA-SKDR  460 (521)
Q Consensus       389 ~a~~~l~~l~~~~~~~~~---~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l--~~~~--~~~~~~~~il~~l~~~-l~d~  460 (521)
                      ..+.-+..+...+..+.+   ...++..+...+++++.+|-+.|+..+..=  ...+  ....+.+.+.|.+.+. -++.
T Consensus       274 ~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n~~~~~li~~~~~~i~p~i~~~L~~~~~~HW  353 (409)
T PF01603_consen  274 LFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNNEYFLSLISQNSRVILPIIFPALYRNSKNHW  353 (409)
T ss_dssp             HHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGSHHHHHHHHCTHHHHHHHHHHHHSSTTSS-S
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCHHHHHHHHhChHHHHHHHHHHHHHHHHHHh
Confidence            344555555555554433   355677777788999999998888665432  1111  1122334444444442 3456


Q ss_pred             CchHHHHHHHHHHHHHhhhchHHH
Q 009975          461 VPNIKFNVAKVLQSLIPIVDQSMV  484 (521)
Q Consensus       461 ~~~VR~~a~~~l~~~~~~~~~~~~  484 (521)
                      +..||..|.+++..+... +++.+
T Consensus       354 n~~Vr~~a~~vl~~l~~~-d~~lf  376 (409)
T PF01603_consen  354 NQTVRNLAQNVLKILMEM-DPKLF  376 (409)
T ss_dssp             STTHHHHHHHHHHHHHTT-SHHHH
T ss_pred             hHHHHHHHHHHHHHHHHh-CHHHH
Confidence            888999999999888763 44433

The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.

>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised

Probab=94.59  E-value=4.9  Score=39.24  Aligned_cols=76  Identities=16%  Similarity=0.150  Sum_probs=58.0

Q ss_pred             hHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcChhhhh---hhhHHHHHHhcCC
Q 009975          111 PMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCV---AHILPVIVNFSQD  186 (521)
Q Consensus       111 ~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~---~~l~~~l~~~~~d  186 (521)
                      ...|-.++++||.++..++.+......-+.+...+++....-|..|.-++...+.........   +.+.+.+...+++
T Consensus       101 ~r~Ri~aA~ALG~l~~~~~~~~~~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~L~~  179 (441)
T PF12054_consen  101 IRARIAAAKALGLLLSYWPESSLQEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEILEN  179 (441)
T ss_pred             HHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHHHcC
Confidence            567899999999999999776665666667888888888888999999999988876543222   3566666666663

This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=94.58  E-value=1.7  Score=35.90  Aligned_cols=112  Identities=18%  Similarity=0.145  Sum_probs=71.9

Q ss_pred             HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHHHHH---hhhHHHHHhhhcCc-chHHHHHHHHHHHHhhcccCh-
Q 009975          368 DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAM---QHITPQVLEMINNP-HYLYRMTILRAISLLAPVMGS-  442 (521)
Q Consensus       368 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~---~~l~~~l~~~l~~~-~~~~r~~a~~~l~~l~~~~~~-  442 (521)
                      .+++..-+.++++++++.-|..++..++.++...+.+.+.   ...+..+...++.+ ...++..++.++..+....+. 
T Consensus        23 l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~  102 (165)
T PF08167_consen   23 LHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGK  102 (165)
T ss_pred             HHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            3455556677777877888888877777777766554432   33444555555543 356777888888887764332 


Q ss_pred             -----HH---HhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhch
Q 009975          443 -----EI---TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ  481 (521)
Q Consensus       443 -----~~---~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~  481 (521)
                           +.   ..+.+++.+++++++  ..+...++.+|..+...++.
T Consensus       103 p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~pt  147 (165)
T PF08167_consen  103 PTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPT  147 (165)
T ss_pred             CchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCc
Confidence                 11   124556666776766  56777888888888876543

>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []

Probab=94.32  E-value=5.6  Score=38.73  Aligned_cols=192  Identities=12%  Similarity=0.155  Sum_probs=112.3

Q ss_pred             HHHHHHHHHHHhcCCC-ChHHHHHHHHhHHHHHHhhCc---h---hhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhh
Q 009975           94 LKTELRSIYTQLCQDD-MPMVRRSAASNLGKFAATVEP---A---HLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKL  166 (521)
Q Consensus        94 ~~~~l~~~l~~l~~~~-~~~vr~~a~~~l~~l~~~~~~---~---~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~  166 (521)
                      ..+.+...+...++.+ +|.--+...++++.+++...+   +   .+++.+.|.+...++.+-.+.--++.++++.+.+.
T Consensus        68 il~~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~~~~~v~~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~  147 (435)
T PF03378_consen   68 ILQHLTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEADPEAVSQFEEALFPPFQEILQQDVQEFIPYVFQILAQLLEL  147 (435)
T ss_dssp             HHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GGGHH---HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            4556677777777665 789999999999999887553   2   47888999999988877655566778888888877


Q ss_pred             cChh---hhhhhhHHHHH-HhcCCCChHHHHHHHHHHHHHHHHhCCC----ccccchHHHHHHhcCCChHHHHHHHHHhH
Q 009975          167 LEPQ---DCVAHILPVIV-NFSQDKSWRVRYMVANQLYELCEAVGPE----PTRMDLVPAYVRLLRDNEAEVRIAAAGKV  238 (521)
Q Consensus       167 ~~~~---~~~~~l~~~l~-~~~~d~~~~vR~~~~~~l~~i~~~~~~~----~~~~~l~~~l~~~l~d~~~~vr~~a~~~l  238 (521)
                      -+.+   .....++|.+. ...-+....+ -+.++.+..+.+.-+..    .....++.++.+++.....+  ..+...|
T Consensus       148 ~~~~~~p~~y~~L~~~Ll~p~lWe~~gni-PalvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~~D--~~gF~LL  224 (435)
T PF03378_consen  148 RPSSPLPDAYKQLFPPLLSPALWERRGNI-PALVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIASKAND--HYGFDLL  224 (435)
T ss_dssp             SS--S--TTTGGGHHHHTSGGGGGSTTTH-HHHHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT-TTCH--HHHHHHH
T ss_pred             CCCCCCcHHHHHHHHHHcCcchhccCCCc-CcHHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCCCCcc--hHHHHHH
Confidence            6522   12233444433 2222222222 33444555554433322    22356788888888765322  4578889


Q ss_pred             HHHHhhhCHHHH---HHhhhHHHHHhc-cCCcHHHHHHHHHHHHccccccChHH
Q 009975          239 TKFCRILNPELA---IQHILPCVKELS-SDSSQHVRSALASVIMGMAPLLGKDA  288 (521)
Q Consensus       239 ~~l~~~~~~~~~---~~~~~~~l~~~~-~d~~~~vr~~~~~~l~~i~~~~~~~~  288 (521)
                      ..+..+++.+.+   .+.++..+.+.+ +.+.++.+...+..++.++-..|.+.
T Consensus       225 ~~iv~~~p~~~l~~yl~~I~~lll~RLq~skT~kf~~~fv~F~~~~~~~~g~~~  278 (435)
T PF03378_consen  225 ESIVENLPPEALEPYLKQIFTLLLTRLQSSKTEKFVKRFVVFLSLFAIKYGPDF  278 (435)
T ss_dssp             HHHHHHS-HHHHGGGHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH-HHH
T ss_pred             HHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHcCHHH
Confidence            999999888643   333444433333 45666666666666666555455443

CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.

>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=94.30  E-value=1  Score=36.33  Aligned_cols=141  Identities=20%  Similarity=0.208  Sum_probs=85.4

Q ss_pred             hHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcChhhhhhhhHHHHHHhc-CCCCh
Q 009975          111 PMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFS-QDKSW  189 (521)
Q Consensus       111 ~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~-~d~~~  189 (521)
                      +.||...+.++..++...-+ ..|+.+++.+.++.+. ++........+|..+.+.+.+             .. .+.+.
T Consensus         2 ~~i~~kl~~~l~~i~~~~~P-~~Wp~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~-------------~~~~~~~~   66 (148)
T PF08389_consen    2 PFIRNKLAQVLAEIAKRDWP-QQWPDFLEDLLQLLQS-SPQHLELVLRILRILPEEITD-------------FRRSSLSQ   66 (148)
T ss_dssp             HHHHHHHHHHHHHHHHHHTT-TTSTTHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHT-------------SHCCHSHH
T ss_pred             hhHHHHHHHHHHHHHHHHCh-hhCchHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHh-------------hhchhhhH
Confidence            46888889999998876542 3467777777777766 355566677777766654321             00 11222


Q ss_pred             HHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCC----hHHHHHHHHHhHHHHHhhhCHHHHHH-hhhHHHHHhccC
Q 009975          190 RVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDN----EAEVRIAAAGKVTKFCRILNPELAIQ-HILPCVKELSSD  264 (521)
Q Consensus       190 ~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~----~~~vr~~a~~~l~~l~~~~~~~~~~~-~~~~~l~~~~~d  264 (521)
                      ..|...-+.+..-.         +.++..+.+.+...    ..++...+++++.......+.+.+.+ .+++.+.+++.+
T Consensus        67 ~r~~~l~~~l~~~~---------~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~~~~~l~~~~~~l~~  137 (148)
T PF08389_consen   67 ERRRELKDALRSNS---------PDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIELIINSNLLNLIFQLLQS  137 (148)
T ss_dssp             HHHHHHHHHHHHHH---------HHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHHHSSSHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHH---------HHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHhccHHHHHHHHHHcCC
Confidence            33444444443322         34455555554332    27788888999988888777765554 477777777755


Q ss_pred             CcHHHHHHHHHHH
Q 009975          265 SSQHVRSALASVI  277 (521)
Q Consensus       265 ~~~~vr~~~~~~l  277 (521)
                      ++  .+..|++++
T Consensus       138 ~~--~~~~A~~cl  148 (148)
T PF08389_consen  138 PE--LREAAAECL  148 (148)
T ss_dssp             CC--CHHHHHHHH
T ss_pred             HH--HHHHHHHhC
Confidence            54  366666654

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....

>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES)

Probab=94.28  E-value=4.6  Score=37.59  Aligned_cols=74  Identities=7%  Similarity=0.024  Sum_probs=53.2

Q ss_pred             hhHHHHHHHHhcC---CChHHHHHHHHHhHHHHhhhChhh------hHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHH
Q 009975          330 QSLLPAIVELAED---RHWRVRLAIIEYIPLLASQLGVGF------FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEE  400 (521)
Q Consensus       330 ~~~~~~l~~~~~~---~~~~vr~~~~~~l~~l~~~~~~~~------~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~  400 (521)
                      +.++.....++.+   ..|.+|....+.+..+.+.+....      ....++..+.-.+++++.+|...++.++..+.+.
T Consensus       116 ~~vf~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~  195 (319)
T PF08767_consen  116 EAVFECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNN  195 (319)
T ss_dssp             HHHHHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHH
Confidence            4444444455533   458999999999998888764322      1234667777788999999999999999999876


Q ss_pred             hCH
Q 009975          401 FGP  403 (521)
Q Consensus       401 ~~~  403 (521)
                      ...
T Consensus       196 ~~~  198 (319)
T PF08767_consen  196 VSK  198 (319)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            644

CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=94.13  E-value=4.6  Score=38.38  Aligned_cols=143  Identities=20%  Similarity=0.165  Sum_probs=92.8

Q ss_pred             hHHhhhhcCc--hhHHHHHHHHHHHHHHhhcChhHHHHhHHHHHHHhhcC-CCCcchhhhhhhhhhhcCCCChHHHHHH-
Q 009975           23 PPLETLCTVE--ETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAG-EWFTARVSACGLFHIAYPSAPDILKTEL-   98 (521)
Q Consensus        23 ~~l~~l~~~~--~~~vR~~a~~~l~~i~~~~~~~~~~~~l~p~i~~~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~l-   98 (521)
                      ..|.++...+  ...||-.+.+.|..+...-.-+.+...=+-.|..+.+. +..+...+..+++++++++..+. ...+ 
T Consensus       183 D~Llrmf~aPn~et~vRve~~rlLEq~~~aeN~d~va~~~~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSeet-~~~Lv  261 (832)
T KOG3678|consen  183 DLLLRMFQAPNLETSVRVEAARLLEQILVAENRDRVARIGLGVILNLAKEREPVELARSVAGILEHMFKHSEET-CQRLV  261 (832)
T ss_pred             HHHHHHHhCCchhHHHHHHHHHHHHHHHhhhhhhHHhhccchhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHHH-HHHHH
Confidence            3344444433  34779999998888776655555554445555555543 23344455678888988876544 3333 


Q ss_pred             ----HHHHHHhcCCCChHHHHHHHHhHHHHHHhhCch----hhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhh
Q 009975           99 ----RSIYTQLCQDDMPMVRRSAASNLGKFAATVEPA----HLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKL  166 (521)
Q Consensus        99 ----~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~----~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~  166 (521)
                          +..+.-.+.-.+|.+-+.++-+|++++-+-+..    .+...+-.++..+..+.++-.|..|+-+...++..
T Consensus       262 aa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV~vlat~  337 (832)
T KOG3678|consen  262 AAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAVAVLATN  337 (832)
T ss_pred             hhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHHhhhhhh
Confidence                334444456667888888888999887654432    34556667777777778888899998888888765

>KOG2149 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.06  E-value=1.2  Score=41.48  Aligned_cols=109  Identities=21%  Similarity=0.233  Sum_probs=84.3

Q ss_pred             HHHcCCCcHHHHHHHHHHHHHHHHHhCHH--HHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChHH---HhhcHH
Q 009975          376 MQWLQDKVYSIRDAAANNLKRLAEEFGPE--WAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI---TCSRLL  450 (521)
Q Consensus       376 ~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~---~~~~il  450 (521)
                      +.-++..+..||..|...+..+.......  .....+++.+..+..|.+..+|.+...++..++.....+.   +..-++
T Consensus        64 l~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~~~l~~  143 (393)
T KOG2149|consen   64 LSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPMVSLLM  143 (393)
T ss_pred             HhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcchHHHHH
Confidence            34567788899999988888877653221  1235577788888899999999999999988776555544   345678


Q ss_pred             HHHHhhcCCCCchHHHHHHHHHHHHHhhhchHHH
Q 009975          451 PVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMV  484 (521)
Q Consensus       451 ~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~  484 (521)
                      +++...+..-.+.||.-++..+..+...+++...
T Consensus       144 ~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~~  177 (393)
T KOG2149|consen  144 PYISSAMTHITPEIQEDSLKFLSLLLERYPDTFS  177 (393)
T ss_pred             HHHHHHHhhccHHHHHhhHHHHHHHHHHcChHHH
Confidence            8889999999999999999999999988876543

>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES)

Probab=94.03  E-value=5.1  Score=37.25  Aligned_cols=155  Identities=14%  Similarity=0.155  Sum_probs=93.2

Q ss_pred             HHHHHHHHHhHHHHhhhCh-hhhHHHHHHHHHH-Hc---CCCcHHHHHH-HHHHHHHHHHHhCHH------HHHhhhHHH
Q 009975          346 RVRLAIIEYIPLLASQLGV-GFFDDKLGALCMQ-WL---QDKVYSIRDA-AANNLKRLAEEFGPE------WAMQHITPQ  413 (521)
Q Consensus       346 ~vr~~~~~~l~~l~~~~~~-~~~~~~l~~~l~~-~l---~d~~~~vr~~-a~~~l~~l~~~~~~~------~~~~~l~~~  413 (521)
                      .+|..+++.+..+...... +.....++|.+.. .+   ++..+..|.. ++.+++.++..++..      .+.+.++..
T Consensus        42 ~iKkeIL~Li~t~i~~~~~~~~v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~  121 (319)
T PF08767_consen   42 TIKKEILKLIETFISKAEDPEEVANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEAVFEC  121 (319)
T ss_dssp             HHHHHHHHHHHHHHHT-S-HHHHHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence            4566677777777666553 2223333333322 33   3355555553 455666666666542      223444444


Q ss_pred             HHhhhcC---cchHHHHHHHHHHHHhhcccChHH------HhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhch---
Q 009975          414 VLEMINN---PHYLYRMTILRAISLLAPVMGSEI------TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ---  481 (521)
Q Consensus       414 l~~~l~~---~~~~~r~~a~~~l~~l~~~~~~~~------~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~---  481 (521)
                      ..++.++   .-+..|......+..+...+-...      ....++..+.-+++++..+|...+++++..+......   
T Consensus       122 Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~~~~  201 (319)
T PF08767_consen  122 TLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSKTNP  201 (319)
T ss_dssp             HHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH-SH
T ss_pred             HHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhcCH
Confidence            4555543   237899999999988887543322      2346778888889999999999999999999877655   


Q ss_pred             ----HHHHhhHHHHHHH---hcCCCC
Q 009975          482 ----SMVEKTIRPCLVE---LTEDPD  500 (521)
Q Consensus       482 ----~~~~~~~~~~l~~---l~~D~~  500 (521)
                          ..+..+.++.+..   .+.|++
T Consensus       202 ~~~~~F~~~y~~~il~~if~vltD~~  227 (319)
T PF08767_consen  202 EFANQFYQQYYLDILQDIFSVLTDSD  227 (319)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCcc
Confidence                3444555555554   345554

CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.

>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=94.01  E-value=3.1  Score=40.50  Aligned_cols=142  Identities=13%  Similarity=0.191  Sum_probs=92.7

Q ss_pred             HHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCCC--------hhHHHHHHHHHHHHhhh
Q 009975           95 KTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQ--------DSVRLLAVEGCAALGKL  166 (521)
Q Consensus        95 ~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~--------~~vr~~a~~~l~~l~~~  166 (521)
                      ....+.-+.+.+...++..|+.|+..|.+       +.-.+.++|.+..++.+.-        -..-....+....+..+
T Consensus       205 lQlYy~~It~a~~g~~~~~r~eAL~sL~T-------DsGL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~N  277 (576)
T KOG2549|consen  205 LQLYYKEITEACTGSDEPLRQEALQSLET-------DSGLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDN  277 (576)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHhhcc-------CccHHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcC
Confidence            34456667777777889999999887754       3335566777776665431        12222233333334333


Q ss_pred             --cChhhhhhhhHHHHHHhc----------CCCChHHHHHHHHHHHHHHHHhCCCc--cccchHHHHHHhcCCC--hHHH
Q 009975          167 --LEPQDCVAHILPVIVNFS----------QDKSWRVRYMVANQLYELCEAVGPEP--TRMDLVPAYVRLLRDN--EAEV  230 (521)
Q Consensus       167 --~~~~~~~~~l~~~l~~~~----------~d~~~~vR~~~~~~l~~i~~~~~~~~--~~~~l~~~l~~~l~d~--~~~v  230 (521)
                        +--+.+..+++|.+..++          .|..|.+|..++..+..+++.++...  ....++..+.+.+.|+  .+..
T Consensus       278 p~i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~~~~st  357 (576)
T KOG2549|consen  278 PNIFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNKKPLST  357 (576)
T ss_pred             CccchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCchh
Confidence              111346667778776643          36789999999999999998887532  2356777777777776  3677


Q ss_pred             HHHHHHhHHHHHh
Q 009975          231 RIAAAGKVTKFCR  243 (521)
Q Consensus       231 r~~a~~~l~~l~~  243 (521)
                      ...++..|..++.
T Consensus       358 ~YGai~gL~~lg~  370 (576)
T KOG2549|consen  358 HYGAIAGLSELGH  370 (576)
T ss_pred             hhhHHHHHHHhhh
Confidence            8888888887766

>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein)

Probab=93.86  E-value=0.7  Score=36.97  Aligned_cols=75  Identities=11%  Similarity=0.140  Sum_probs=59.8

Q ss_pred             HhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChHHH----hhcHHHHHHhhcCC-CCchHHHHHHHHHHHHHhhhch
Q 009975          407 MQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEIT----CSRLLPVVINASKD-RVPNIKFNVAKVLQSLIPIVDQ  481 (521)
Q Consensus       407 ~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~----~~~il~~l~~~l~d-~~~~VR~~a~~~l~~~~~~~~~  481 (521)
                      ....+..|...++++|+++...|+..+..+.+.+|..+.    ...++..+.+++.+ .++.||...+..+......+..
T Consensus        35 ~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~~  114 (144)
T cd03568          35 AKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEFKN  114 (144)
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhCC
Confidence            345666777778888888888899999998888887553    35788888888888 7888999999999888877754

Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.

>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6)

Probab=93.86  E-value=0.3  Score=35.56  Aligned_cols=68  Identities=25%  Similarity=0.366  Sum_probs=46.5

Q ss_pred             CCcHHHHHHHHHHHHHHHHHhCHH--HHHhhhHHHHHhhhcCc--chHHHHHHHHHHHHhhcccChHHHhhcHHHH
Q 009975          381 DKVYSIRDAAANNLKRLAEEFGPE--WAMQHITPQVLEMINNP--HYLYRMTILRAISLLAPVMGSEITCSRLLPV  452 (521)
Q Consensus       381 d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~~~--~~~~r~~a~~~l~~l~~~~~~~~~~~~il~~  452 (521)
                      |++|.+|..|++.++.++..++..  .....+...+.+.+.|+  +...+..|+..+..+    |.+.+...++|.
T Consensus        17 ~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~l----G~~~vr~~ilP~   88 (92)
T PF07571_consen   17 DNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSAL----GPEAVRALILPN   88 (92)
T ss_pred             cchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH----HHHHHHHhhccC
Confidence            567888888888888888887743  34566777777777654  466777787777776    444444445543

; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=93.84  E-value=0.41  Score=39.11  Aligned_cols=132  Identities=16%  Similarity=0.195  Sum_probs=81.7

Q ss_pred             CCcHHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhccc---ChHHH-hhcHHHHHHhh
Q 009975          381 DKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVM---GSEIT-CSRLLPVVINA  456 (521)
Q Consensus       381 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~---~~~~~-~~~il~~l~~~  456 (521)
                      ...+++|..+.-++..+.+..+.+ +.+.+-..+...+.+....-...++.++..+.+..   +...| .+.+++.+...
T Consensus        16 ~~~~~~r~~a~v~l~k~l~~~~~~-~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~   94 (157)
T PF11701_consen   16 RQPEEVRSHALVILSKLLDAAREE-FKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPL   94 (157)
T ss_dssp             TTSCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHH
T ss_pred             CCCHhHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHH
Confidence            356678888888887776444333 44555556666666655556677777777777632   22222 35677777777


Q ss_pred             cC--CCCchHHHHHHHHHHHHHhhhc-hHHHHhhHHHHHHHhcC-CCCcc-HHHHHHHHHHH
Q 009975          457 SK--DRVPNIKFNVAKVLQSLIPIVD-QSMVEKTIRPCLVELTE-DPDVD-VRFFATQAIQS  513 (521)
Q Consensus       457 l~--d~~~~VR~~a~~~l~~~~~~~~-~~~~~~~~~~~l~~l~~-D~~~~-vr~~a~~al~~  513 (521)
                      ..  ..+..+...+++++..-+..-. ...+.++..+.|.++.+ +++.. +|..|+-++-+
T Consensus        95 ~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K  156 (157)
T PF11701_consen   95 ASRKSKDRKVQKAALELLSAACIDKSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK  156 (157)
T ss_dssp             HH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred             HhcccCCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence            76  6677778888888876654322 23345777788888763 44444 67777666543

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p []

Probab=93.75  E-value=5.3  Score=36.45  Aligned_cols=133  Identities=17%  Similarity=0.235  Sum_probs=90.2

Q ss_pred             HHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchhh---H-----hhhHHHHHHHHhc--------CCChHHHHHHHH
Q 009975          290 IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL---L-----SQSLLPAIVELAE--------DRHWRVRLAIIE  353 (521)
Q Consensus       290 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~---~-----~~~~~~~l~~~~~--------~~~~~vr~~~~~  353 (521)
                      ..-++|.++.++.|.++++|..++..+..+........   +     .+.+.+.+...+.        +++..+-..+..
T Consensus       117 ~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~  196 (282)
T PF10521_consen  117 WPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYP  196 (282)
T ss_pred             hhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHH
Confidence            45689999999999999999999999999987665443   2     1233333333332        566667677777


Q ss_pred             HhHHHHhhhC---h----hhhHHHHHHHHHHHcC-C---CcHHHHHHHHHHHHHHHHHhCHHH--HHhhhHHHHHhhhcC
Q 009975          354 YIPLLASQLG---V----GFFDDKLGALCMQWLQ-D---KVYSIRDAAANNLKRLAEEFGPEW--AMQHITPQVLEMINN  420 (521)
Q Consensus       354 ~l~~l~~~~~---~----~~~~~~l~~~l~~~l~-d---~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~~  420 (521)
                      ++-.+++...   .    ..+.+.+...++..+. -   +.+.++...++.+..++..+|...  +.+.++|.+.+.+.+
T Consensus       197 ~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~~l~~~l~n  276 (282)
T PF10521_consen  197 ALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIPVLSQILEN  276 (282)
T ss_pred             HHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcC
Confidence            7777766431   1    1222333343333322 2   358999999999999999998764  357889988888877


Q ss_pred             cc
Q 009975          421 PH  422 (521)
Q Consensus       421 ~~  422 (521)
                      +.
T Consensus       277 pf  278 (282)
T PF10521_consen  277 PF  278 (282)
T ss_pred             CC
Confidence            64

>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]

Probab=93.67  E-value=9.2  Score=38.97  Aligned_cols=70  Identities=16%  Similarity=0.170  Sum_probs=54.2

Q ss_pred             HHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccChHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhh
Q 009975          250 AIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQ  321 (521)
Q Consensus       250 ~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~  321 (521)
                      +...++..+..+..|+=..|+..++..+..+...-+++  ...++-.+++-+.|++..+-..|...|..+..
T Consensus       301 ly~rfievLe~lS~D~L~~vk~raL~ti~~lL~~kPEq--E~~LL~~lVNKlGDpqnKiaskAsylL~~L~~  370 (988)
T KOG2038|consen  301 LYFRFIEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQ--ENNLLVLLVNKLGDPQNKIASKASYLLEGLLA  370 (988)
T ss_pred             HHHHHHHHHHHHccccHHHHHHHHHHHHHHHHhCCcHH--HHHHHHHHHHhcCCcchhhhhhHHHHHHHHHh
Confidence            34567788888888998899998888888776555544  35688888899999998888888888877654

>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.54  E-value=8  Score=37.86  Aligned_cols=387  Identities=14%  Similarity=0.135  Sum_probs=192.7

Q ss_pred             HHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcChhhhh
Q 009975           94 LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCV  173 (521)
Q Consensus        94 ~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~  173 (521)
                      .++.++..+..+....+ .+|.+.+-++..++-.++.  ..+.+..++..+.+.+.. +     ..+-++.+.+|.+...
T Consensus        60 lrdsl~thl~~l~~~~~-~i~tQL~vavA~Lal~~~~--W~n~I~e~v~~~~~~~~~-~-----~~lLeiL~VlPEE~~~  130 (559)
T KOG2081|consen   60 LRDSLITHLKELHDHPD-VIRTQLAVAVAALALHMPE--WVNPIFELVRALSNKHPA-V-----PILLEILKVLPEETRD  130 (559)
T ss_pred             HHHHHHHHHHHHHhCCc-hHHHHHHHHHHHHHHHhHh--hcchHHHHHHHhhcCCcc-H-----HHHHHHHHhCcHhhcc
Confidence            45556667777666655 8888888888888877662  223355555555544433 2     2333344444333111


Q ss_pred             hhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCh---HHHHHHHHHhHHHHHh--hhCHH
Q 009975          174 AHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNE---AEVRIAAAGKVTKFCR--ILNPE  248 (521)
Q Consensus       174 ~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~---~~vr~~a~~~l~~l~~--~~~~~  248 (521)
                      ....     ..    ..-|......++       ..  ...++..+..++++.+   ..+-..++++++.-..  .++++
T Consensus       131 ~~~~-----~~----a~Rr~e~~~~l~-------~~--~~~~L~~l~~lLe~~~l~~~~~l~~Vl~~l~SWl~~~~~~~d  192 (559)
T KOG2081|consen  131 IRLT-----VG----ANRRHEFIDELA-------AQ--VSKVLVFLSDLLERSDLKSSDDLEQVLRCLGSWLRLHVFPPD  192 (559)
T ss_pred             hhhh-----hh----hhhHHHHHHHHH-------Hh--HHHHHHHHHHHHhhcCCChhhHHHHHHHHHhhhhhhccCCHH
Confidence            1110     00    001111111111       11  1334445555554322   3344445555554333  23333


Q ss_pred             HHHH--hhhHHHHHhccCCcHHHHHHHHHHHHccccccCh-H---HH------HHhHHHHHHHh-hcCCChHHHHHHHHH
Q 009975          249 LAIQ--HILPCVKELSSDSSQHVRSALASVIMGMAPLLGK-D---AT------IEQLLPIFLSL-LKDEFPDVRLNIISK  315 (521)
Q Consensus       249 ~~~~--~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~-~---~~------~~~l~~~l~~~-l~d~~~~vr~~a~~~  315 (521)
                      .+..  .++......+++.+  .-..+..++..+...... +   .+      ...++|....+ ....+.+-+.+.++-
T Consensus       193 ~v~a~~pLi~l~F~sl~~~~--lhe~At~cic~ll~~~~~~~~~~~~~~~l~~~v~~L~~~~~~a~~~~d~d~~~a~~RI  270 (559)
T KOG2081|consen  193 QVLASFPLITLAFRSLSDDE--LHEEATECICALLYCSLDRSEGLPLAAILFIGVIILETAFHLAMAGEDLDKNEAICRI  270 (559)
T ss_pred             HHHhhhHHHHHHHHHcccch--hhHHHHHHHHHHHHHhhhhhccCchhHHHhccccccchHHHHhhcccCHHHHHHHHHH
Confidence            3221  23333333334322  223333333332221100 0   01      11223333222 334456666666666


Q ss_pred             HHHhhhhhc------hhhHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChh-------hhHHH---HHHHHHHHc
Q 009975          316 LDQVNQVIG------IDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG-------FFDDK---LGALCMQWL  379 (521)
Q Consensus       316 l~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~-------~~~~~---l~~~l~~~l  379 (521)
                      +..+++..-      ++.+ -.++..+.-..+++.|++-..-......+.+.+-..       .|.++   ++..+..-.
T Consensus       271 Ftel~eaf~~~i~~np~~~-l~~vellLl~~~h~~~evie~SF~fW~~lse~l~~~~~~~~~~~frpy~~rLvs~l~~h~  349 (559)
T KOG2081|consen  271 FTELGEAFVVLISTNPEEF-LRIVELLLLVAGHNDTEVIEASFNFWYSLSEELTLTDDDEALGIFRPYFLRLVSLLKRHV  349 (559)
T ss_pred             HHHHHHHHHHHHhhCCCcc-hhHHHHHHHhccCCchhhhhhhHHhhhhhHHHHhccccHHHHHHhHHHHHHHHHHHHHHc
Confidence            666655432      2211 233444444557777766655544444443332211       12222   222222222


Q ss_pred             C------------CCcHHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChHHHhh
Q 009975          380 Q------------DKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCS  447 (521)
Q Consensus       380 ~------------d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~  447 (521)
                      +            ++..+-|......+..+....|.+...+++.-.+.+  +.+.|..-++++..+..+++....+  ..
T Consensus       350 qlp~~~~~l~Ee~~~f~~fR~~v~dvl~Dv~~iigs~e~lk~~~~~l~e--~~~~We~~EAaLF~l~~~~~~~~~~--e~  425 (559)
T KOG2081|consen  350 QLPPDQFDLPEEESEFFEFRLKVGDVLKDVAFIIGSDECLKQMYIRLKE--NNASWEEVEAALFILRAVAKNVSPE--EN  425 (559)
T ss_pred             cCCCccccCccchhHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHcc--CCCchHHHHHHHHHHHHHhccCCcc--cc
Confidence            1            233567888888888888888876554444444443  5677999999999999999877655  36


Q ss_pred             cHHHHHHhhcCC--CCchHHHHHHHHHHHHHhhhchHH-HHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 009975          448 RLLPVVINASKD--RVPNIKFNVAKVLQSLIPIVDQSM-VEKTIRPCLVELTEDPDVDVRFFATQAIQSIDH  516 (521)
Q Consensus       448 ~il~~l~~~l~d--~~~~VR~~a~~~l~~~~~~~~~~~-~~~~~~~~l~~l~~D~~~~vr~~a~~al~~l~~  516 (521)
                      .++|-+++++..  .-..+|..++-.+|.+.+.+.... ..+-++..+.+...+..  .-..|+.++..++.
T Consensus       426 ~i~pevl~~i~nlp~Q~~~~~ts~ll~g~~~ew~~~~p~~le~v~~~~~~~~~~~~--~as~~a~~~~~i~~  495 (559)
T KOG2081|consen  426 TIMPEVLKLICNLPEQAPLRYTSILLLGEYSEWVEQHPELLEPVLRYIRQGLQLKR--LASAAALAFHRICS  495 (559)
T ss_pred             chHHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhhhcc--hhHHHHHHHHHHHH
Confidence            677777776433  234499999999999998876532 22333333333344433  44556666655554

>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins []

Probab=93.49  E-value=1.7  Score=36.93  Aligned_cols=44  Identities=20%  Similarity=0.272  Sum_probs=30.0

Q ss_pred             HHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchhhHhhhHHH
Q 009975          290 IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLP  334 (521)
Q Consensus       290 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~  334 (521)
                      ...++..+.++-.+++...|..+-.+++..+..+|++.+. .++|
T Consensus        39 l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~amGpe~vL-~~lP   82 (198)
T PF08161_consen   39 LKPILKTLGDLRESEDFSFRKELEQVLGAAIRAMGPEQVL-SILP   82 (198)
T ss_pred             HHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHCCHHHHH-HHCC
Confidence            3344555556666677788888888888888888887652 3444

>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting)

Probab=93.38  E-value=1.9  Score=34.43  Aligned_cols=76  Identities=5%  Similarity=0.054  Sum_probs=60.8

Q ss_pred             HhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChHHH----hhcHHHHHHhhcC-CCCchHHHHHHHHHHHHHhhhch
Q 009975          407 MQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEIT----CSRLLPVVINASK-DRVPNIKFNVAKVLQSLIPIVDQ  481 (521)
Q Consensus       407 ~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~----~~~il~~l~~~l~-d~~~~VR~~a~~~l~~~~~~~~~  481 (521)
                      ....+..|.+.++++|+++...|+..+..+.+.+|..+.    ...++..+.+++. .+.+.||..++..+......+..
T Consensus        39 ~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~  118 (142)
T cd03569          39 PKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAFRN  118 (142)
T ss_pred             HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHhCC
Confidence            355677788888889999999999999999998887653    3567777777776 56778999999999998887754


Q ss_pred             H
Q 009975          482 S  482 (521)
Q Consensus       482 ~  482 (521)
                      +
T Consensus       119 ~  119 (142)
T cd03569         119 K  119 (142)
T ss_pred             C
Confidence            3

The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=93.30  E-value=4  Score=33.69  Aligned_cols=58  Identities=16%  Similarity=0.144  Sum_probs=30.6

Q ss_pred             CChHHHHHHHHHHHHHHHHhCCCcc---------ccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhC
Q 009975          187 KSWRVRYMVANQLYELCEAVGPEPT---------RMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN  246 (521)
Q Consensus       187 ~~~~vR~~~~~~l~~i~~~~~~~~~---------~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~  246 (521)
                      +.+.++..++..+..+.....+...         .+.+++.+.+++++  ..+...++.+|..+....+
T Consensus        80 ~~~~~~~~ai~~L~~l~~~~~~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~p  146 (165)
T PF08167_consen   80 DPPSVLEAAIITLTRLFDLIRGKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHP  146 (165)
T ss_pred             CCHHHHHHHHHHHHHHHHHhcCCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCC
Confidence            3444555566665555544332110         12345555555555  4566677777777766554

>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus

Probab=93.23  E-value=1.3  Score=37.41  Aligned_cols=71  Identities=18%  Similarity=0.286  Sum_probs=46.8

Q ss_pred             HhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChHHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhh
Q 009975          407 MQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIV  479 (521)
Q Consensus       407 ~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~  479 (521)
                      .+..++.+.+...+++..+|..|++.+..+... |- ......+|.++.+..|+++.+|..|...+..+.+..
T Consensus         6 ~Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~q-GL-vnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~   76 (187)
T PF12830_consen    6 VQRYLKNILELCLSSDDSVRLAALQVLELILRQ-GL-VNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKH   76 (187)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhc-CC-CChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHh
Confidence            345566666667777777777777777777651 10 012456777777777777777777777777776554

>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]

Probab=93.21  E-value=3.9  Score=40.25  Aligned_cols=209  Identities=15%  Similarity=0.104  Sum_probs=121.3

Q ss_pred             HhhhhHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHHHhHHHHHHHhhcCCCCcchhhhhhhhhhhcCCCChHHHHHH
Q 009975           19 HVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTEL   98 (521)
Q Consensus        19 ~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~p~i~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~l   98 (521)
                      ..++.++..+.+++-.-+|..|.-.+..+.+.+.....         ++....+...+.+...+...+   +.+......
T Consensus       209 ld~~~W~~sms~st~r~~RhtaT~~c~liq~~Lc~qa~---------~lsEKksR~ne~~l~~ln~sl---~~d~i~dic  276 (740)
T COG5537         209 LDYIGWALSMSNSTVRCFRHTATSCCRLIQKKLCVQAF---------SLSEKKSRMNELALYDLNPSL---IRDEIKDIC  276 (740)
T ss_pred             HHHHHHHHhccCCceeeeehhhHHHHHHHHHHHHHHHH---------HHHHHhhhHHHHHHHhhcchH---HHHHHHHHH
Confidence            45677777777777777788888777766664432211         111111111111111111111   122223333


Q ss_pred             HHHHHHhcCCCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcChhhhhhh---
Q 009975           99 RSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAH---  175 (521)
Q Consensus        99 ~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~---  175 (521)
                      ...+.+-..|-++.+|..+...|+.....++.....-..+...-.++.|.+..||....+++..+.++.+..+...+   
T Consensus       277 dsvfvsRy~Dv~d~IRv~c~~~L~dwi~lvP~yf~k~~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f~e  356 (740)
T COG5537         277 DSVFVSRYIDVDDVIRVLCSMSLRDWIGLVPDYFRKILGLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHTDAIRRFVE  356 (740)
T ss_pred             HHHHhhhccchhHHHHHHHHHHHHHHHhcchHHHHhhhcccccccccccchHHHHHHHHHHHHHHHhcCCcchHHHHHHH
Confidence            44555667888999999999999999988876555555666666778899999999999999999998775432222   


Q ss_pred             -hHHHHHH-hcCCCChHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHh
Q 009975          176 -ILPVIVN-FSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCR  243 (521)
Q Consensus       176 -l~~~l~~-~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~  243 (521)
                       +..-+.+ +..|.+- ||..+.+.+..+.. .|-  ....-+.++..++-|..+.-|+...+.+..+++
T Consensus       357 RFk~rILE~~r~D~d~-VRi~sik~l~~lr~-lg~--L~~SeIlIvsscmlDi~pd~r~~~~E~v~~icK  422 (740)
T COG5537         357 RFKDRILEFLRTDSDC-VRICSIKSLCYLRI-LGV--LSSSEILIVSSCMLDIIPDSRENIVESVESICK  422 (740)
T ss_pred             HHHHHHHHHHhhccch-hhHHHHHHHHHHHH-hcc--cchhHHHHHHHHHhcCCCcchHHHHHHHHHHHH
Confidence             2223333 4456565 99999888776543 221  112223444455555555433333333333333

>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins

Probab=93.20  E-value=2.7  Score=33.40  Aligned_cols=73  Identities=15%  Similarity=0.129  Sum_probs=57.3

Q ss_pred             hhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChHHH----hhcHHHHHHhhcCC------CCchHHHHHHHHHHHHHh
Q 009975          408 QHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEIT----CSRLLPVVINASKD------RVPNIKFNVAKVLQSLIP  477 (521)
Q Consensus       408 ~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~----~~~il~~l~~~l~d------~~~~VR~~a~~~l~~~~~  477 (521)
                      ...+..+...++++|+++...|+..+..+.+.+|..+.    ...++..+.+++.+      +...||...+..+.....
T Consensus        37 k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~  116 (139)
T cd03567          37 QLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL  116 (139)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence            44566777788888999999999999999988887653    35677777777753      578899999999988887


Q ss_pred             hhc
Q 009975          478 IVD  480 (521)
Q Consensus       478 ~~~  480 (521)
                      .+.
T Consensus       117 ~f~  119 (139)
T cd03567         117 ELP  119 (139)
T ss_pred             Hhc
Confidence            765

The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.

>KOG1848 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.18  E-value=16  Score=40.17  Aligned_cols=107  Identities=18%  Similarity=0.176  Sum_probs=69.6

Q ss_pred             HHHHHHHhhcCCChHHHHHHHHHHHHhhhh----hchhh----HhhhHHHHHHHHh--cCCChH---H----HHHHHHHh
Q 009975          293 LLPIFLSLLKDEFPDVRLNIISKLDQVNQV----IGIDL----LSQSLLPAIVELA--EDRHWR---V----RLAIIEYI  355 (521)
Q Consensus       293 l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~----~~~~~----~~~~~~~~l~~~~--~~~~~~---v----r~~~~~~l  355 (521)
                      ++..+.+++.|+-++||.+|++.+-++...    +|+..    +...++|.+...-  ....|.   +    -...+-.+
T Consensus       998 ll~~L~~~~~dsr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngkeiqkqwtet~~lti 1077 (1610)
T KOG1848|consen  998 LLVHLADLCEDSRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKEIQKQWTETSCLTI 1077 (1610)
T ss_pred             HHHHHHHHhccchHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccchhhhcchhHhhhhhhhhhhhH
Confidence            455667788899999999999999888654    44433    2345556554210  001121   1    23455567


Q ss_pred             HHHHhhhChhh-----------hHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Q 009975          356 PLLASQLGVGF-----------FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAE  399 (521)
Q Consensus       356 ~~l~~~~~~~~-----------~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~  399 (521)
                      +.+++.++..+           ..+.++..+..+..|.++++..+++.++.++..
T Consensus      1078 sgIaklf~e~fk~llnln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qell~ 1132 (1610)
T KOG1848|consen 1078 SGIAKLFSENFKLLLNLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQELLF 1132 (1610)
T ss_pred             HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHHH
Confidence            77777665431           124466667777889999999999999998864

>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus

Probab=93.17  E-value=0.34  Score=40.97  Aligned_cols=71  Identities=17%  Similarity=0.264  Sum_probs=58.5

Q ss_pred             hhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchHHHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHHhh
Q 009975          446 CSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVM  518 (521)
Q Consensus       446 ~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~~~~~~~~l~~l~~D~~~~vr~~a~~al~~l~~~~  518 (521)
                      .+.+++.+++++.+++..||..|++.+..+... |-- .-....|.+..|..|+++.+|..|...+..+.+.-
T Consensus         6 ~Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~q-GLv-nP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~   76 (187)
T PF12830_consen    6 VQRYLKNILELCLSSDDSVRLAALQVLELILRQ-GLV-NPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKH   76 (187)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhc-CCC-ChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHh
Confidence            456788888899999999999999999998874 211 11457899999999999999999999999887654

>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]

Probab=93.05  E-value=11  Score=37.89  Aligned_cols=299  Identities=14%  Similarity=0.129  Sum_probs=147.9

Q ss_pred             hhhHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHHHhHHHH---HHHhhcCCCCcchhhhhhhhhhhcCCCChHHHHH
Q 009975           21 LLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPL---VKRLAAGEWFTARVSACGLFHIAYPSAPDILKTE   97 (521)
Q Consensus        21 l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~p~---i~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~   97 (521)
                      -+..+.+.+-++++.+...|+-.++....     .++++.-|.   +...+++++...|..++--++..+.+...   .+
T Consensus       416 gL~qldkylys~~~~ikaGaLLgigi~~~-----gv~ne~dpalALLsdyv~~~~s~~ri~aIlGLglayaGsq~---e~  487 (878)
T KOG2005|consen  416 GLEQLDKYLYSDESYIKAGALLGIGISNS-----GVFNECDPALALLSDYLQSSSSIHRIGAILGLGLAYAGSQR---EE  487 (878)
T ss_pred             hHHHHHHHhhcCCchhhhccceeeeeecc-----ccccccCHHHHHHHHhccCCCceeehHHhhhhHHhhcCCch---HH
Confidence            55666665555666677676655544333     333344444   44555566777888887666777765543   34


Q ss_pred             HHHHHHHhcCCCCh--HHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhc--CCChhHHHHHHHHHHHHhhhcChhhhh
Q 009975           98 LRSIYTQLCQDDMP--MVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQ--DDQDSVRLLAVEGCAALGKLLEPQDCV  173 (521)
Q Consensus        98 l~~~l~~l~~~~~~--~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~--d~~~~vr~~a~~~l~~l~~~~~~~~~~  173 (521)
                      ++..+...+.|.+.  +|.-.+.-+||.+.----.+.....++..+.+-..  -++...|..+.-.-   .-++++.+..
T Consensus       488 V~~lL~Pi~~d~~~~~ev~~~aslsLG~IfvGscn~dvts~ilqtlmekse~El~d~~~RFL~LGL~---llflgkqe~~  564 (878)
T KOG2005|consen  488 VLELLSPIMFDTKSPMEVVAFASLSLGMIFVGSCNEDVTSSILQTLMEKSETELEDQWFRFLALGLA---LLFLGKQESV  564 (878)
T ss_pred             HHHHHhHHhcCCCCchhHHHHHHhhcceeEEecCChHHHHHHHHHHHHhhhhhhhchHHHHHHHHHH---HHHhcccchH
Confidence            44344445555443  45555555555543211123344444444433322  23445666553221   1122222222


Q ss_pred             hhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCh--H-HHHHHHHH--hHHHHHhhhCHH
Q 009975          174 AHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNE--A-EVRIAAAG--KVTKFCRILNPE  248 (521)
Q Consensus       174 ~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~--~-~vr~~a~~--~l~~l~~~~~~~  248 (521)
                      ..+...+    ..-...+|+.+-- +-..+...|.......=-..+...+.+.+  . .-+..|+-  ++-.+++.+|.+
T Consensus       565 d~~~e~~----~~i~~~~~~~~~~-lv~~caYaGTGnvl~Iq~q~ll~~cgE~~~~~e~~~~~avLgiAliAMgeeig~e  639 (878)
T KOG2005|consen  565 DAVVETI----KAIEGPIRKHESI-LVKSCAYAGTGNVLKIQSQLLLSFCGEHDADLESEQELAVLGIALIAMGEEIGSE  639 (878)
T ss_pred             HHHHHHH----HHhhhHHHHHHHH-HHHHhhccccCceEEechhhhhhhcCCCccchhhhccchhhhhhhhhhhhhhhhH
Confidence            2222222    1112234443333 33344444433221100022333333321  1 11112221  122333333333


Q ss_pred             HHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccChHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchhhH
Q 009975          249 LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL  328 (521)
Q Consensus       249 ~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~  328 (521)
                          -.+-.+-.++.-.++.+|++.--+++-++..-++    -.++..+.+..+|.+.+|-.+++-+++-+........+
T Consensus       640 ----M~lR~f~h~l~yge~~iRravPLal~llsvSNPq----~~vlDtLsk~shd~D~eva~naIfamGLiGAGTnNARl  711 (878)
T KOG2005|consen  640 ----MVLRHFGHLLHYGEPHIRRAVPLALGLLSVSNPQ----VNVLDTLSKFSHDGDLEVAMNAIFAMGLIGAGTNNARL  711 (878)
T ss_pred             ----HHHHHHHHHHHcCCHHHHHHHHHHHhhhccCCCc----chHHHHHHHhccCcchHHHHHHHHHhccccCCcchHHH
Confidence                3455566667778899999998888877643332    24677888899999999999999998877654332222


Q ss_pred             hhhHHHHHHH-HhcCCC
Q 009975          329 SQSLLPAIVE-LAEDRH  344 (521)
Q Consensus       329 ~~~~~~~l~~-~~~~~~  344 (521)
                       ..++..+.. ..+|.+
T Consensus       712 -a~mLrqlaSYyyKd~~  727 (878)
T KOG2005|consen  712 -AQMLRQLASYYYKDSK  727 (878)
T ss_pred             -HHHHHHHHHHHhccch
Confidence             344444433 234544

>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein)

Probab=92.95  E-value=4  Score=32.70  Aligned_cols=87  Identities=10%  Similarity=0.077  Sum_probs=61.5

Q ss_pred             HHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcCh----hhhhhhhHHHHHHhcCC-CChHHHHHHHHHHHHHHHHhCCC
Q 009975          135 TDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP----QDCVAHILPVIVNFSQD-KSWRVRYMVANQLYELCEAVGPE  209 (521)
Q Consensus       135 ~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~~~~d-~~~~vR~~~~~~l~~i~~~~~~~  209 (521)
                      .+.+..+.+-++..++.+...|+.++..+.++.+.    +.....++..+..++.+ .+..||..+.+.+...+..++.+
T Consensus        36 k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~~~  115 (144)
T cd03568          36 KDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEFKND  115 (144)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhCCC
Confidence            34555566666777888888899999999888876    33445567777777777 78889999999999888888755


Q ss_pred             ccccchHHHHHH
Q 009975          210 PTRMDLVPAYVR  221 (521)
Q Consensus       210 ~~~~~l~~~l~~  221 (521)
                      .....+...+..
T Consensus       116 ~~l~~i~~~y~~  127 (144)
T cd03568         116 PSLSLMSDLYKK  127 (144)
T ss_pred             cccHHHHHHHHH
Confidence            433333333333

Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.

>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=92.93  E-value=13  Score=41.34  Aligned_cols=206  Identities=19%  Similarity=0.172  Sum_probs=133.9

Q ss_pred             HHHHHHhhcCCChHHHHHHHHHHHHhhhhhchhhHhhhHHHHH----HHHhcCCChHHHHHHHHHhHHHHhhhChh--hh
Q 009975          294 LPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAI----VELAEDRHWRVRLAIIEYIPLLASQLGVG--FF  367 (521)
Q Consensus       294 ~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l----~~~~~~~~~~vr~~~~~~l~~l~~~~~~~--~~  367 (521)
                      +..+++-+.-.++..+..|+..+..++.....+.. ..++|..    .++..|.+.+||......+..+...+++.  .+
T Consensus        43 l~~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~-~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~lsp~  121 (1312)
T KOG0803|consen   43 LDIIVKKLLKRDETTKIKALQELSELIDTSDTEEL-KGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKKLSPF  121 (1312)
T ss_pred             HHHHHHHHhccChHHHHHHHHhHHHhcccccchHH-hhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            34445555567788999999999998877665544 2345443    45678999999999999999888888764  45


Q ss_pred             HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHH----HHHhhhHHHHHhhh--------cC-----------cchH
Q 009975          368 DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE----WAMQHITPQVLEMI--------NN-----------PHYL  424 (521)
Q Consensus       368 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~----~~~~~l~~~l~~~l--------~~-----------~~~~  424 (521)
                      ...++|..+-...|....|-.+|...+......-...    .....+.+...+.+        .|           .-.|
T Consensus       122 LK~li~~wl~~~~d~~~~vs~aa~~sf~~~f~~ek~~~v~~~c~~~i~~~~~~~~~~~~~~slSd~~~~s~Ee~E~k~~R  201 (1312)
T KOG0803|consen  122 LKSLIPPWLGGQFDLDYPVSEAAKASFKDGFAEEKDRHVWFKCDPEIFYLVTEILVKETPDSLSDLRTLSSEELESKYQR  201 (1312)
T ss_pred             HHhhhhhhhheecccchHHHHHHHHHHHhhcChhhhHHHHHHhhHHHHHHHHHHHhccCccccchhhhcchHHHHHhhHH
Confidence            6667788777888888888877776665443211000    01233333333321        11           1235


Q ss_pred             HHHHHHHHHHHhhcccChHHHh----h---c--HHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchH---HHHhhHHHHH
Q 009975          425 YRMTILRAISLLAPVMGSEITC----S---R--LLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS---MVEKTIRPCL  492 (521)
Q Consensus       425 ~r~~a~~~l~~l~~~~~~~~~~----~---~--il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~---~~~~~~~~~l  492 (521)
                      +-..++-++..+....|...-.    +   .  -...+++.+.++.+.+|.+..+++..+...+..-   ....++.|.+
T Consensus       202 vi~ssLl~l~~l~~~~~~~~el~~~~~~~kt~~s~~~fWk~~~~k~~~i~~~~~ell~~l~~~i~~~~~~~~~~~l~~~~  281 (1312)
T KOG0803|consen  202 VISSSLLLLLKLFKITGDEEELHSLSEKEKTFLSSEKFWKLLKSKSPSIKVALLELLLSLIDDILNRVMESEKNYLKPVL  281 (1312)
T ss_pred             HHHHHHHHHHHHHHHhCchHhhhhhhhhhhhhhhHHHHHHHhcCCCcchhHHHHHHHHHHHhhhHHhcchhhhhHhhHHH
Confidence            5566667777777555543211    1   1  2356788899999999999999999988766543   2236677777


Q ss_pred             HHhcCCCC
Q 009975          493 VELTEDPD  500 (521)
Q Consensus       493 ~~l~~D~~  500 (521)
                      .....+.+
T Consensus       282 ~~~~~~~d  289 (1312)
T KOG0803|consen  282 LGSIDSLD  289 (1312)
T ss_pred             Hccccccc
Confidence            77666665

>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=92.85  E-value=2.8  Score=37.26  Aligned_cols=131  Identities=15%  Similarity=0.197  Sum_probs=72.1

Q ss_pred             HcCCCcHHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCc------chHHHHHHHHHHHHhhccc--ChHHHhhcH
Q 009975          378 WLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNP------HYLYRMTILRAISLLAPVM--GSEITCSRL  449 (521)
Q Consensus       378 ~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~------~~~~r~~a~~~l~~l~~~~--~~~~~~~~i  449 (521)
                      ++.+.+...|.+|+.++..       +....+++|.+..++++.      |...-.+.+.....+.+.-  =.+.+...+
T Consensus       206 l~dEs~~~~r~aAl~sLr~-------dsGlhQLvPYFi~f~~eqit~Nl~nl~~LtTv~~m~~sLL~N~~iFvdPY~hql  278 (450)
T COG5095         206 LLDESDEQTRDAALESLRN-------DSGLHQLVPYFIHFFNEQITKNLKNLEKLTTVVMMYSSLLKNKYIFVDPYLHQL  278 (450)
T ss_pred             HHHHHHHHHHHHHHHHhcc-------CccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCceeecHHHHHH
Confidence            3455677788888776532       222456677766665542      3444455555555555411  113345667


Q ss_pred             HHHHHhhc------CCC----CchHHHHHHHHHHHHHhhhchHHH--HhhHHHHHHH--hcCCCCccHHHHHHHHHHHHH
Q 009975          450 LPVVINAS------KDR----VPNIKFNVAKVLQSLIPIVDQSMV--EKTIRPCLVE--LTEDPDVDVRFFATQAIQSID  515 (521)
Q Consensus       450 l~~l~~~l------~d~----~~~VR~~a~~~l~~~~~~~~~~~~--~~~~~~~l~~--l~~D~~~~vr~~a~~al~~l~  515 (521)
                      +|.++.++      +++    ...+|.-|+..++.++..++..+.  .+.+...+.+  +-..........|.+++..+.
T Consensus       279 mPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~YktLkPRvtrTllKafLD~~k~~sT~YGalkgls~l~  358 (450)
T COG5095         279 MPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSYKTLKPRVTRTLLKAFLDREKTESTQYGALKGLSILS  358 (450)
T ss_pred             HHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhhhhhchHHHHHHHHHHHhcccccchhhhhhhhhhhhc
Confidence            77776653      122    234888899998888888776533  2333333333  223344455556666665544

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=92.71  E-value=6  Score=36.80  Aligned_cols=143  Identities=11%  Similarity=0.068  Sum_probs=78.1

Q ss_pred             HHHHHcCCCcHHHHHHHHHHHHHHHHHhCHHHHH--hhhHHHHHhhhc----CcchHHHHHHHHHHHHhhcc--cChHHH
Q 009975          374 LCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAM--QHITPQVLEMIN----NPHYLYRMTILRAISLLAPV--MGSEIT  445 (521)
Q Consensus       374 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~--~~l~~~l~~~l~----~~~~~~r~~a~~~l~~l~~~--~~~~~~  445 (521)
                      .+++.+..+++.++..++..+..+....+.....  +.+++.+.+.+.    +++......++.+++.+...  +...++
T Consensus       109 ~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~  188 (312)
T PF03224_consen  109 PFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFW  188 (312)
T ss_dssp             HHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHH
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHH
Confidence            3445788889999999999999998654332211  245555555544    35566778899999998852  222334


Q ss_pred             hhcHHHHHHhhc-----CCC--CchHHHHHHHHHHHHHhh--hchHHHHhhHHHHHHHhcC-CCCccHHHHHHHHHHHHH
Q 009975          446 CSRLLPVVINAS-----KDR--VPNIKFNVAKVLQSLIPI--VDQSMVEKTIRPCLVELTE-DPDVDVRFFATQAIQSID  515 (521)
Q Consensus       446 ~~~il~~l~~~l-----~d~--~~~VR~~a~~~l~~~~~~--~~~~~~~~~~~~~l~~l~~-D~~~~vr~~a~~al~~l~  515 (521)
                      ....++.+...+     .+.  ...+...++-++-.+.-.  .-.......++|.|.++.. .....|-+.+..++..+.
T Consensus       189 ~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~  268 (312)
T PF03224_consen  189 KSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLL  268 (312)
T ss_dssp             THHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTT
T ss_pred             hcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence            456677777766     222  223334444444433211  1112223447777776543 456677777777776665


Q ss_pred             H
Q 009975          516 H  516 (521)
Q Consensus       516 ~  516 (521)
                      +
T Consensus       269 ~  269 (312)
T PF03224_consen  269 S  269 (312)
T ss_dssp             S
T ss_pred             h
Confidence            4

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans)

Probab=92.64  E-value=8.2  Score=35.47  Aligned_cols=180  Identities=14%  Similarity=0.099  Sum_probs=122.6

Q ss_pred             HHHHHHHHhhcCCC-hhHHHHHHHHHHHHhhhcChhhhhhh---hHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCcc
Q 009975          136 DIMSIFEDLTQDDQ-DSVRLLAVEGCAALGKLLEPQDCVAH---ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPT  211 (521)
Q Consensus       136 ~l~~~l~~l~~d~~-~~vr~~a~~~l~~l~~~~~~~~~~~~---l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~  211 (521)
                      .+..-+.++++..- ..|-..|.++...+.+.++++...++   ..|-+..++...+-.||-.....+....-.++....
T Consensus        54 ~v~krLaqCL~P~LPsGVH~KaLevY~~IF~~ig~~~L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~~L~  133 (307)
T PF04118_consen   54 QVSKRLAQCLNPALPSGVHQKALEVYEYIFERIGPDGLAQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGPALR  133 (307)
T ss_pred             HHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCHHHHHhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccHHHH
Confidence            34444555555443 47888999999999999998765554   345555566677778999888888777655554211


Q ss_pred             --ccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccC----
Q 009975          212 --RMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLG----  285 (521)
Q Consensus       212 --~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~----  285 (521)
                        ...++..+.-.++|+..++...+...+..+...++.+.|...++-.+.     .++.+|..+...+..-.+...    
T Consensus       134 p~l~~li~slLpGLede~sE~~~~~~~ll~~l~~~v~~~~F~~~lwl~ii-----~sp~~Rl~al~~l~~~l~~~~~~~~  208 (307)
T PF04118_consen  134 PCLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAVGDKYFWQCLWLCII-----TSPSRRLGALNYLLRRLPKFQNDEL  208 (307)
T ss_pred             HHHHHHHHHhccccccCCchHHHHHHHHHHHHHHhcChhHHHHHHHHHHh-----cCcchhHHHHHHHHHhCCccccccc
Confidence              123333344456788899999999999999999998877666665553     456688888877766554433    


Q ss_pred             --hHHH--------HHhHHHHHHHhhcCCChHHHHHHHHHHHHhh
Q 009975          286 --KDAT--------IEQLLPIFLSLLKDEFPDVRLNIISKLDQVN  320 (521)
Q Consensus       286 --~~~~--------~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~  320 (521)
                        ....        ..-++..+...++|++--|+++++.-+-.-.
T Consensus       209 ~~~~~~~~~~~~~~~~Llv~al~~~L~D~~iLVqR~~LDlLl~~~  253 (307)
T PF04118_consen  209 SLSSEEQEYCLGPDPGLLVRALCACLEDENILVQRGFLDLLLSHF  253 (307)
T ss_pred             ccchHHHHHhcCCCccHHHHHHHHHhCCchHHHHHHHHHHHHHhC
Confidence              1000        2346778888899998888888876665543

DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=92.47  E-value=0.35  Score=28.87  Aligned_cols=30  Identities=30%  Similarity=0.310  Sum_probs=18.6

Q ss_pred             hhHHHHHHHhcCCCCccHHHHHHHHHHHHH
Q 009975          486 KTIRPCLVELTEDPDVDVRFFATQAIQSID  515 (521)
Q Consensus       486 ~~~~~~l~~l~~D~~~~vr~~a~~al~~l~  515 (521)
                      .-.+|.|.+++.+++.+|+..|++|+..|.
T Consensus        11 ~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~   40 (41)
T PF00514_consen   11 AGGIPPLVQLLKSPDPEVQEEAAWALGNLA   40 (41)
T ss_dssp             TTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence            345566666666666666666666666554

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule)

Probab=92.38  E-value=2.2  Score=33.67  Aligned_cols=75  Identities=11%  Similarity=0.145  Sum_probs=58.7

Q ss_pred             HhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChHHHh----hcHHHHHHhhcCC---CCchHHHHHHHHHHHHHhhh
Q 009975          407 MQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITC----SRLLPVVINASKD---RVPNIKFNVAKVLQSLIPIV  479 (521)
Q Consensus       407 ~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~----~~il~~l~~~l~d---~~~~VR~~a~~~l~~~~~~~  479 (521)
                      ....+..|...++++++.+...|+..+..+...+|..+..    ..++..+.+++.+   ..+.||..++..+......+
T Consensus        35 ~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f  114 (133)
T cd03561          35 PKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESF  114 (133)
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence            3556777888888889999999999999999988875532    3566667777765   47789999999999988877


Q ss_pred             ch
Q 009975          480 DQ  481 (521)
Q Consensus       480 ~~  481 (521)
                      +.
T Consensus       115 ~~  116 (133)
T cd03561         115 GG  116 (133)
T ss_pred             cC
Confidence            65

It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me

>KOG2149 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.36  E-value=2.2  Score=39.85  Aligned_cols=111  Identities=15%  Similarity=0.055  Sum_probs=82.9

Q ss_pred             HHHHHHhcCCCChHHHHHHHHhHHHHHHhhCch--hhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcChhhh---h
Q 009975           99 RSIYTQLCQDDMPMVRRSAASNLGKFAATVEPA--HLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDC---V  173 (521)
Q Consensus        99 ~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~---~  173 (521)
                      +.-+...+++.+..||+.|...+..+....+..  .....+++.+..+..|++..||....+++..+.....++..   .
T Consensus        60 lkeLl~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~~  139 (393)
T KOG2149|consen   60 LKELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPMV  139 (393)
T ss_pred             HHHHHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcchH
Confidence            444455567888999999999999988773322  24566778888888999999999999999988777666542   2


Q ss_pred             hhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCC
Q 009975          174 AHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE  209 (521)
Q Consensus       174 ~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~  209 (521)
                      .-+++.+.....+-.+.+|..+...+..++..+++.
T Consensus       140 ~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~  175 (393)
T KOG2149|consen  140 SLLMPYISSAMTHITPEIQEDSLKFLSLLLERYPDT  175 (393)
T ss_pred             HHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcChH
Confidence            336667777778888888888888887777665543

>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=92.33  E-value=5  Score=32.25  Aligned_cols=141  Identities=11%  Similarity=0.146  Sum_probs=79.2

Q ss_pred             hHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChhhhHHHHHHHHHHHcCCC-cH
Q 009975          306 PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDK-VY  384 (521)
Q Consensus       306 ~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~-~~  384 (521)
                      +.||...+..+..++...-++.+ +.+++.+.+..+. +......++..+..+.+.+..             ..++. ..
T Consensus         2 ~~i~~kl~~~l~~i~~~~~P~~W-p~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~-------------~~~~~~~~   66 (148)
T PF08389_consen    2 PFIRNKLAQVLAEIAKRDWPQQW-PDFLEDLLQLLQS-SPQHLELVLRILRILPEEITD-------------FRRSSLSQ   66 (148)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTTS-TTHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHT-------------SHCCHSHH
T ss_pred             hhHHHHHHHHHHHHHHHHChhhC-chHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHh-------------hhchhhhH
Confidence            35677777788877776555554 6677777777666 345555555555555544322             00111 11


Q ss_pred             HHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcC----cchHHHHHHHHHHHHhhcccChHHHh-hcHHHHHHhhcCC
Q 009975          385 SIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINN----PHYLYRMTILRAISLLAPVMGSEITC-SRLLPVVINASKD  459 (521)
Q Consensus       385 ~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~----~~~~~r~~a~~~l~~l~~~~~~~~~~-~~il~~l~~~l~d  459 (521)
                      .-|......+..-         ...++..+.+.+..    .+......++.+++........+.+. ..+++.+++.+.+
T Consensus        67 ~r~~~l~~~l~~~---------~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~~~~~l~~~~~~l~~  137 (148)
T PF08389_consen   67 ERRRELKDALRSN---------SPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIELIINSNLLNLIFQLLQS  137 (148)
T ss_dssp             HHHHHHHHHHHHH---------HHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHHHSSSHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHH---------HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHhccHHHHHHHHHHcCC
Confidence            1222222222211         12233333333322    23777888889999888866665544 4589999998865


Q ss_pred             CCchHHHHHHHHH
Q 009975          460 RVPNIKFNVAKVL  472 (521)
Q Consensus       460 ~~~~VR~~a~~~l  472 (521)
                      +.  .|..|+++|
T Consensus       138 ~~--~~~~A~~cl  148 (148)
T PF08389_consen  138 PE--LREAAAECL  148 (148)
T ss_dssp             CC--CHHHHHHHH
T ss_pred             HH--HHHHHHHhC
Confidence            44  488888775

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=92.23  E-value=0.43  Score=28.49  Aligned_cols=30  Identities=20%  Similarity=0.255  Sum_probs=23.3

Q ss_pred             hcHHHHHHhhcCCCCchHHHHHHHHHHHHH
Q 009975          447 SRLLPVVINASKDRVPNIKFNVAKVLQSLI  476 (521)
Q Consensus       447 ~~il~~l~~~l~d~~~~VR~~a~~~l~~~~  476 (521)
                      ...+|.+.++++++++.||..|+++|+.++
T Consensus        11 ~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~   40 (41)
T PF00514_consen   11 AGGIPPLVQLLKSPDPEVQEEAAWALGNLA   40 (41)
T ss_dssp             TTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence            456778888888888888888888887764

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6)

Probab=92.21  E-value=0.44  Score=34.68  Aligned_cols=69  Identities=17%  Similarity=0.202  Sum_probs=51.4

Q ss_pred             CcchHHHHHHHHHHHHhhcccChHH--HhhcHHHHHHhhcCCCCch--HHHHHHHHHHHHHhhhchHHHHhhHHHHH
Q 009975          420 NPHYLYRMTILRAISLLAPVMGSEI--TCSRLLPVVINASKDRVPN--IKFNVAKVLQSLIPIVDQSMVEKTIRPCL  492 (521)
Q Consensus       420 ~~~~~~r~~a~~~l~~l~~~~~~~~--~~~~il~~l~~~l~d~~~~--VR~~a~~~l~~~~~~~~~~~~~~~~~~~l  492 (521)
                      +.+|.+|..|...++.++..++...  ..+.+...+.+.+.|+...  .+-.|+..|..+    |++.+...++|-+
T Consensus        17 ~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~l----G~~~vr~~ilP~l   89 (92)
T PF07571_consen   17 DNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSAL----GPEAVRALILPNL   89 (92)
T ss_pred             cchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH----HHHHHHHhhccCc
Confidence            5689999999999999999888643  5678888888888877543  466676666555    5566666666654

; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus

>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion

Probab=92.12  E-value=0.18  Score=30.37  Aligned_cols=24  Identities=38%  Similarity=0.443  Sum_probs=13.6

Q ss_pred             cchHHHHHHhcCCChHHHHHHHHH
Q 009975          213 MDLVPAYVRLLRDNEAEVRIAAAG  236 (521)
Q Consensus       213 ~~l~~~l~~~l~d~~~~vr~~a~~  236 (521)
                      +.+...+.+.+.|+++.||.+|++
T Consensus        17 ~~v~~~i~~rl~D~s~~VR~aav~   40 (42)
T PF12765_consen   17 SDVQSAIIRRLSDSSPSVREAAVD   40 (42)
T ss_pred             HHHHHHHHHHhcCCChHHHHHHHH
Confidence            345555555566666666665554

>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting)

Probab=92.08  E-value=5.2  Score=31.97  Aligned_cols=89  Identities=15%  Similarity=0.082  Sum_probs=62.4

Q ss_pred             HHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcChh----hhhhhhHHHHHHhcC-CCChHHHHHHHHHHHHHHHHhCCC
Q 009975          135 TDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ----DCVAHILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGPE  209 (521)
Q Consensus       135 ~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~----~~~~~l~~~l~~~~~-d~~~~vR~~~~~~l~~i~~~~~~~  209 (521)
                      .+.+..+.+-++..++.+...|+.+|..+.++.+..    .....++.-+..++. ..++.||..+...+...+..++.+
T Consensus        40 k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~  119 (142)
T cd03569          40 KYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAFRNK  119 (142)
T ss_pred             HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHhCCC
Confidence            455566666667788889999999999999887752    333445666666655 577889999999999998888766


Q ss_pred             ccccchHHHHHHhc
Q 009975          210 PTRMDLVPAYVRLL  223 (521)
Q Consensus       210 ~~~~~l~~~l~~~l  223 (521)
                      ...+.+...+..+.
T Consensus       120 ~~l~~i~~~y~~L~  133 (142)
T cd03569         120 PQLKYVVDTYQILK  133 (142)
T ss_pred             cccHHHHHHHHHHH
Confidence            44444444444443

The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=91.87  E-value=1.1  Score=34.04  Aligned_cols=68  Identities=10%  Similarity=0.109  Sum_probs=40.0

Q ss_pred             HHHHHHHHhhc-CCChhHHHHHHHHHHHHhhhcChhh-h--hhhhHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 009975          136 DIMSIFEDLTQ-DDQDSVRLLAVEGCAALGKLLEPQD-C--VAHILPVIVNFSQDKSWRVRYMVANQLYELC  203 (521)
Q Consensus       136 ~l~~~l~~l~~-d~~~~vr~~a~~~l~~l~~~~~~~~-~--~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~  203 (521)
                      .++..+.+++. +.++.+-..|+.-++.++.+.+... .  .-.....+.+++++++++||+.|..++..+.
T Consensus        43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm  114 (119)
T PF11698_consen   43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM  114 (119)
T ss_dssp             HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            44455555552 3345556667777777777764421 1  1124556677788888888888888877665

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=91.69  E-value=1  Score=34.33  Aligned_cols=68  Identities=7%  Similarity=0.098  Sum_probs=40.2

Q ss_pred             hHHHHHhhh-cCcchHHHHHHHHHHHHhhcccChHH-Hh--hcHHHHHHhhcCCCCchHHHHHHHHHHHHHh
Q 009975          410 ITPQVLEMI-NNPHYLYRMTILRAISLLAPVMGSEI-TC--SRLLPVVINASKDRVPNIKFNVAKVLQSLIP  477 (521)
Q Consensus       410 l~~~l~~~l-~~~~~~~r~~a~~~l~~l~~~~~~~~-~~--~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~  477 (521)
                      ++..|.+++ .+.+..+-..|+.=+|.++...+... +.  -..-..++.++.+++++||..|+.++..+..
T Consensus        44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~  115 (119)
T PF11698_consen   44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV  115 (119)
T ss_dssp             HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            445555555 33355566667777777776543321 11  2345667777788888888888888776653

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM

Probab=91.69  E-value=3  Score=33.31  Aligned_cols=75  Identities=11%  Similarity=0.148  Sum_probs=59.8

Q ss_pred             HhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChHHHh----hcHHHHHHhhcCCCCc-h---HHHHHHHHHHHHHhh
Q 009975          407 MQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITC----SRLLPVVINASKDRVP-N---IKFNVAKVLQSLIPI  478 (521)
Q Consensus       407 ~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~----~~il~~l~~~l~d~~~-~---VR~~a~~~l~~~~~~  478 (521)
                      ....+..|...++++++.+...|+..+..+.+.+|..+..    ..++..+..++.++.. .   ||..++..+......
T Consensus        40 ~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~  119 (140)
T PF00790_consen   40 AKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEA  119 (140)
T ss_dssp             HHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHH
Confidence            4667788888999999999999999999999988876543    4588888886665422 2   899999999998887


Q ss_pred             hch
Q 009975          479 VDQ  481 (521)
Q Consensus       479 ~~~  481 (521)
                      ++.
T Consensus       120 f~~  122 (140)
T PF00790_consen  120 FKS  122 (140)
T ss_dssp             TTT
T ss_pred             HCC
Confidence            744

Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....

>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 []

Probab=91.50  E-value=2.9  Score=31.48  Aligned_cols=63  Identities=16%  Similarity=0.191  Sum_probs=41.3

Q ss_pred             cchHHHHHHHHHHHHhhcccChHH--HhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchHHHH
Q 009975          421 PHYLYRMTILRAISLLAPVMGSEI--TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVE  485 (521)
Q Consensus       421 ~~~~~r~~a~~~l~~l~~~~~~~~--~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~~  485 (521)
                      .....|..++.+++.+.+..|...  +.++++-.+...++.+  +.|..+++++..+.+.++.+.+.
T Consensus        27 ~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~fi~~L~~~~l~   91 (107)
T PF08064_consen   27 KPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIP--ELREEALSCWNCFIKTLDEEDLG   91 (107)
T ss_pred             CCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHHHCCHHHHH
Confidence            456677788888888888433321  3344554455555544  78888888888888888775543

; GO: 0004674 protein serine/threonine kinase activity

>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=91.39  E-value=28  Score=38.89  Aligned_cols=232  Identities=13%  Similarity=0.150  Sum_probs=108.6

Q ss_pred             CChHHHHHHHHHHHHHHHHhCCCccc---cchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHH--HHHHhhhHHHHHh
Q 009975          187 KSWRVRYMVANQLYELCEAVGPEPTR---MDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE--LAIQHILPCVKEL  261 (521)
Q Consensus       187 ~~~~vR~~~~~~l~~i~~~~~~~~~~---~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~~~~l~~~  261 (521)
                      .++..|..+.+.++++......+...   +.....+.++..|++..||......+..+...++..  .+.+.++|...-.
T Consensus        53 kD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~lsp~LK~li~~wl~~  132 (1312)
T KOG0803|consen   53 RDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKKLSPFLKSLIPPWLGG  132 (1312)
T ss_pred             cChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhhhhhe
Confidence            45555666666666555443332221   112233444556666666666666666666655433  3344444444444


Q ss_pred             ccCCcHHHHHHHHHHHHccccc-cChHH---HHHhHHHHHHHhh----c---------------CCChHHHHHHHHHHHH
Q 009975          262 SSDSSQHVRSALASVIMGMAPL-LGKDA---TIEQLLPIFLSLL----K---------------DEFPDVRLNIISKLDQ  318 (521)
Q Consensus       262 ~~d~~~~vr~~~~~~l~~i~~~-~~~~~---~~~~l~~~l~~~l----~---------------d~~~~vr~~a~~~l~~  318 (521)
                      ..|....|-.+|-..+...... .....   ....+.+.....+    .               .....|-..++..+..
T Consensus       133 ~~d~~~~vs~aa~~sf~~~f~~ek~~~v~~~c~~~i~~~~~~~~~~~~~~slSd~~~~s~Ee~E~k~~Rvi~ssLl~l~~  212 (1312)
T KOG0803|consen  133 QFDLDYPVSEAAKASFKDGFAEEKDRHVWFKCDPEIFYLVTEILVKETPDSLSDLRTLSSEELESKYQRVISSSLLLLLK  212 (1312)
T ss_pred             ecccchHHHHHHHHHHHhhcChhhhHHHHHHhhHHHHHHHHHHHhccCccccchhhhcchHHHHHhhHHHHHHHHHHHHH
Confidence            4455555544444444332220 00000   0112222222221    0               0112344445555555


Q ss_pred             hhhhhchhhHhhhH---------HHHHHHHhcCCChHHHHHHHHHhHHHHhhhChh---hhHHHHHHHHHHHcCCCcHHH
Q 009975          319 VNQVIGIDLLSQSL---------LPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG---FFDDKLGALCMQWLQDKVYSI  386 (521)
Q Consensus       319 ~~~~~~~~~~~~~~---------~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~v  386 (521)
                      +....|.+.-....         -..+-.+.+++.+.+|.+..+.+..+.+....-   .-..++.|++.....+.+ -|
T Consensus       213 l~~~~~~~~el~~~~~~~kt~~s~~~fWk~~~~k~~~i~~~~~ell~~l~~~i~~~~~~~~~~~l~~~~~~~~~~~d-~~  291 (1312)
T KOG0803|consen  213 LFKITGDEEELHSLSEKEKTFLSSEKFWKLLKSKSPSIKVALLELLLSLIDDILNRVMESEKNYLKPVLLGSIDSLD-HV  291 (1312)
T ss_pred             HHHHhCchHhhhhhhhhhhhhhhHHHHHHHhcCCCcchhHHHHHHHHHHHhhhHHhcchhhhhHhhHHHHccccccc-cc
Confidence            55554432211101         123334668888999999888888777665432   123556677776666665 33


Q ss_pred             HHHHHHHHHHHHHHhCHHH------HHhhhHHHHHhhhc
Q 009975          387 RDAAANNLKRLAEEFGPEW------AMQHITPQVLEMIN  419 (521)
Q Consensus       387 r~~a~~~l~~l~~~~~~~~------~~~~l~~~l~~~l~  419 (521)
                      -....+.+-.+...+...+      ....++|.+.+...
T Consensus       292 c~~~we~Vl~~~~~~p~~~~~~~~~~~k~il~~l~~~ir  330 (1312)
T KOG0803|consen  292 CSSMWEKVLLNLSSLPDEWLHLNSLLKKGILPLLSNLIR  330 (1312)
T ss_pred             cHHHHHHHHHHhhhhhHHHhcccchhccchhHHHHHHHh
Confidence            3333333332223332222      23456666665544

>smart00288 VHS Domain present in VPS-27, Hrs and STAM

Probab=91.35  E-value=2.3  Score=33.55  Aligned_cols=75  Identities=13%  Similarity=0.171  Sum_probs=57.4

Q ss_pred             HhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChHHH----hhcHHHHHHhhcCCCCc--hHHHHHHHHHHHHHhhhc
Q 009975          407 MQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEIT----CSRLLPVVINASKDRVP--NIKFNVAKVLQSLIPIVD  480 (521)
Q Consensus       407 ~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~----~~~il~~l~~~l~d~~~--~VR~~a~~~l~~~~~~~~  480 (521)
                      ....+..|.+.++++++.+...|+..+..+...+|..+.    ...++..+..++.++..  .||..++..+......+.
T Consensus        35 ~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f~  114 (133)
T smart00288       35 PKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAFK  114 (133)
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHc
Confidence            345667777888888899999999999999988887653    35677888877776533  389999999988887764


Q ss_pred             h
Q 009975          481 Q  481 (521)
Q Consensus       481 ~  481 (521)
                      .
T Consensus       115 ~  115 (133)
T smart00288      115 N  115 (133)
T ss_pred             C
Confidence            3

Unpublished observations. Domain of unknown function.

>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]

Probab=91.27  E-value=18  Score=36.46  Aligned_cols=252  Identities=15%  Similarity=0.168  Sum_probs=130.7

Q ss_pred             HHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCCChh--HHHHHHHHHHHHhhhcChhhh
Q 009975           95 KTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDS--VRLLAVEGCAALGKLLEPQDC  172 (521)
Q Consensus        95 ~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~--vr~~a~~~l~~l~~~~~~~~~  172 (521)
                      ++-.+.++...+++++..+|-.++-.||-......    .++++..+...+.|.+..  |...|.-.++-+.-.-.+++.
T Consensus       450 ~dpalALLsdyv~~~~s~~ri~aIlGLglayaGsq----~e~V~~lL~Pi~~d~~~~~ev~~~aslsLG~IfvGscn~dv  525 (878)
T KOG2005|consen  450 CDPALALLSDYLQSSSSIHRIGAILGLGLAYAGSQ----REEVLELLSPIMFDTKSPMEVVAFASLSLGMIFVGSCNEDV  525 (878)
T ss_pred             cCHHHHHHHHhccCCCceeehHHhhhhHHhhcCCc----hHHHHHHHhHHhcCCCCchhHHHHHHhhcceeEEecCChHH
Confidence            55566777778888888899888888876443222    223333555555665544  555555555544322223444


Q ss_pred             hhhhHHHHHHhcC--CCChHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHH
Q 009975          173 VAHILPVIVNFSQ--DKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELA  250 (521)
Q Consensus       173 ~~~l~~~l~~~~~--d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~  250 (521)
                      ...++..+.+-.+  -.+.-.|..+. .++.+  ..+..    +........++.-+..+|+.+- .+...+.+.|.-..
T Consensus       526 ts~ilqtlmekse~El~d~~~RFL~L-GL~ll--flgkq----e~~d~~~e~~~~i~~~~~~~~~-~lv~~caYaGTGnv  597 (878)
T KOG2005|consen  526 TSSILQTLMEKSETELEDQWFRFLAL-GLALL--FLGKQ----ESVDAVVETIKAIEGPIRKHES-ILVKSCAYAGTGNV  597 (878)
T ss_pred             HHHHHHHHHHhhhhhhhchHHHHHHH-HHHHH--Hhccc----chHHHHHHHHHHhhhHHHHHHH-HHHHHhhccccCce
Confidence            4555555554332  13333444332 22222  12221    2223333333222233443332 22223333332111


Q ss_pred             HHhhh-HHHHHhccCCcHH---HHHHHHHHHHccccccChHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchh
Q 009975          251 IQHIL-PCVKELSSDSSQH---VRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID  326 (521)
Q Consensus       251 ~~~~~-~~l~~~~~d~~~~---vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~  326 (521)
                      . .+- ..+...+.+....   -...++  ++--.-.+|++.-.+..+..+..++.=.++.+|+..--+++-+...- |.
T Consensus       598 l-~Iq~q~ll~~cgE~~~~~e~~~~~av--LgiAliAMgeeig~eM~lR~f~h~l~yge~~iRravPLal~llsvSN-Pq  673 (878)
T KOG2005|consen  598 L-KIQSQLLLSFCGEHDADLESEQELAV--LGIALIAMGEEIGSEMVLRHFGHLLHYGEPHIRRAVPLALGLLSVSN-PQ  673 (878)
T ss_pred             E-EechhhhhhhcCCCccchhhhccchh--hhhhhhhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhccCC-Cc
Confidence            0 000 1222333322211   111222  22222346777667777888888888888999998877777665321 11


Q ss_pred             hHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChh
Q 009975          327 LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG  365 (521)
Q Consensus       327 ~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~  365 (521)
                         -.+++.+.++..|.+..+-..++-+++.+.......
T Consensus       674 ---~~vlDtLsk~shd~D~eva~naIfamGLiGAGTnNA  709 (878)
T KOG2005|consen  674 ---VNVLDTLSKFSHDGDLEVAMNAIFAMGLIGAGTNNA  709 (878)
T ss_pred             ---chHHHHHHHhccCcchHHHHHHHHHhccccCCcchH
Confidence               467888888999999999888888887765544443

>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion

Probab=91.12  E-value=0.4  Score=28.81  Aligned_cols=25  Identities=24%  Similarity=0.331  Sum_probs=17.4

Q ss_pred             HHHHHHHHHHcCCCcHHHHHHHHHH
Q 009975          369 DKLGALCMQWLQDKVYSIRDAAANN  393 (521)
Q Consensus       369 ~~l~~~l~~~l~d~~~~vr~~a~~~  393 (521)
                      +.+...+...+.|+.+.||.+|.+.
T Consensus        17 ~~v~~~i~~rl~D~s~~VR~aav~l   41 (42)
T PF12765_consen   17 SDVQSAIIRRLSDSSPSVREAAVDL   41 (42)
T ss_pred             HHHHHHHHHHhcCCChHHHHHHHHH
Confidence            4566666777777777777777654

>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins

Probab=90.91  E-value=4.9  Score=31.95  Aligned_cols=72  Identities=7%  Similarity=0.030  Sum_probs=48.8

Q ss_pred             hHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChhhhH----HHHHHHHHHHcCC------CcHHHHHHHHHHHHHHHHH
Q 009975          331 SLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD----DKLGALCMQWLQD------KVYSIRDAAANNLKRLAEE  400 (521)
Q Consensus       331 ~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~----~~l~~~l~~~l~d------~~~~vr~~a~~~l~~l~~~  400 (521)
                      ..+..+..-++++++.+...++..+..+++++|..+..    ..++.-+..++.+      .+..||.-++..+..+...
T Consensus        38 ~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~  117 (139)
T cd03567          38 LAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLE  117 (139)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence            34555666667777788888888888888888775422    3344445555542      5678888888888888777


Q ss_pred             hC
Q 009975          401 FG  402 (521)
Q Consensus       401 ~~  402 (521)
                      ++
T Consensus       118 f~  119 (139)
T cd03567         118 LP  119 (139)
T ss_pred             hc
Confidence            65

The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.

>cd06561 AlkD_like A new structural DNA glycosylase

Probab=90.81  E-value=9.5  Score=32.54  Aligned_cols=64  Identities=20%  Similarity=0.213  Sum_probs=37.9

Q ss_pred             HHHHHhhcCCChhHHHHHHHHHHHHhhhcChhhhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Q 009975          139 SIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEA  205 (521)
Q Consensus       139 ~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~  205 (521)
                      +.+.....+++.-+|..+..++......   +.....++.++.....|++..||.++..+|..++..
T Consensus       108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~---~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~  171 (197)
T cd06561         108 DLLEEWAKSENEWVRRAAIVLLLRLIKK---ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKK  171 (197)
T ss_pred             HHHHHHHhCCcHHHHHHHHHHHHHHHHh---cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhh
Confidence            5566666666666666665555444333   223455666666666666666777666666665543

This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=90.75  E-value=22  Score=36.55  Aligned_cols=96  Identities=14%  Similarity=0.085  Sum_probs=65.3

Q ss_pred             cCcchHHHHHHHHHHHHhhcccCh-------HH-HhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchHH-HHhhHH
Q 009975          419 NNPHYLYRMTILRAISLLAPVMGS-------EI-TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSM-VEKTIR  489 (521)
Q Consensus       419 ~~~~~~~r~~a~~~l~~l~~~~~~-------~~-~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~-~~~~~~  489 (521)
                      .+.+..+-++++.+|..+.-..+.       .. -.+..+|.++.++..++..|-.+++.+|..+........ +..+.+
T Consensus       529 ~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rnk~ligk~a~  608 (717)
T KOG1048|consen  529 LSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRNKELIGKYAI  608 (717)
T ss_pred             HhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCchhhhhhhcchH
Confidence            455677778888888877753221       22 246788999999999999999999999999987654433 346777


Q ss_pred             HHHHHhcCCCC------ccHHHHHHHHHHHH
Q 009975          490 PCLVELTEDPD------VDVRFFATQAIQSI  514 (521)
Q Consensus       490 ~~l~~l~~D~~------~~vr~~a~~al~~l  514 (521)
                      |-|.+.+-+..      +++-..++.++-.+
T Consensus       609 ~~lv~~Lp~~~~~~~~sedtv~~vc~tl~ni  639 (717)
T KOG1048|consen  609 PDLVRCLPGSGPSTSLSEDTVRAVCHTLNNI  639 (717)
T ss_pred             HHHHHhCcCCCCCcCchHHHHHHHHHhHHHH
Confidence            87777665543      34444444444433

>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=90.22  E-value=26  Score=36.62  Aligned_cols=361  Identities=10%  Similarity=0.053  Sum_probs=184.7

Q ss_pred             hHHHHHHHHHHHHhhhcChhhhhhhhHHHHHHhcCCCC-----hHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcC-
Q 009975          151 SVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKS-----WRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLR-  224 (521)
Q Consensus       151 ~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~-----~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~-  224 (521)
                      ..|....+++....+.++ +.....+...+.++..|.+     |..-.+++-.+..++..++...  +.-+|-+.+.+- 
T Consensus       439 ~YR~diSD~~~~~Y~ilg-d~ll~~L~~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t~--~~~i~rl~~~~as  515 (982)
T KOG2022|consen  439 SYRKDISDLLMSSYSILG-DGLLDFLIDTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGETE--STWIPRLFETSAS  515 (982)
T ss_pred             HHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCcch--hHHHHHHHHhccc
Confidence            457766777777666666 3345556666666665543     6777777878888888877654  334666666542 


Q ss_pred             ----CChHHHHHHHHHhHHHHHhhhCHHH-HHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccChHH--HHHhHHHHH
Q 009975          225 ----DNEAEVRIAAAGKVTKFCRILNPEL-AIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA--TIEQLLPIF  297 (521)
Q Consensus       225 ----d~~~~vr~~a~~~l~~l~~~~~~~~-~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~--~~~~l~~~l  297 (521)
                          -.++..-..+...++..+..++.+. ..+..+|.+.+.+..+...  ..+...+..+++.+..+.  +.+.++...
T Consensus       516 ik~S~~n~ql~~Tss~~igs~s~~l~e~P~~ln~sl~~L~~~Lh~sk~s--~q~i~tl~tlC~~C~~~L~py~d~~~a~~  593 (982)
T KOG2022|consen  516 IKLSAPNPQLLSTSSDLIGSLSNWLGEHPMYLNPSLPLLFQGLHNSKES--EQAISTLKTLCETCPESLDPYADQFSAVC  593 (982)
T ss_pred             cccccCChhHHHHHHHHHHHHHHHHhcCCcccCchHHHHHHHhcCchHH--HHHHHHHHHHHHhhhhhCchHHHHHHHHH
Confidence                2356677788888888888876653 3456777777777544433  333444666665543321  223344444


Q ss_pred             HHhhcCC--ChHHHHHHHHHHHHhhhhhchhhHhhhHHHHH----HH---Hh--cCCChHHHHHHHHHh---HHHHhhhC
Q 009975          298 LSLLKDE--FPDVRLNIISKLDQVNQVIGIDLLSQSLLPAI----VE---LA--EDRHWRVRLAIIEYI---PLLASQLG  363 (521)
Q Consensus       298 ~~~l~d~--~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l----~~---~~--~~~~~~vr~~~~~~l---~~l~~~~~  363 (521)
                      ...+...  .+.+|..+..++|.+.+.+.++...+.+...+    .+   .+  +-+++..+...+..+   +.+...+.
T Consensus       594 ~e~l~~~~~~~S~~~klm~sIGyvls~~~pEe~~kyl~~lin~il~qle~~l~~~i~~~e~~l~~~~~l~~iS~LftSL~  673 (982)
T KOG2022|consen  594 YEVLNKSNAKDSDRLKLMKSIGYVLSRLKPEEIPKYLMKLINPILSQLEINLAPGIDDQENHLRIAFQLNTISALFTSLI  673 (982)
T ss_pred             HHHhcccccCchHHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHhccC
Confidence            4444332  46789999999999998887654322222221    11   11  113333333333333   33333321


Q ss_pred             h----------------------hhhHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhc
Q 009975          364 V----------------------GFFDDKLGALCMQWLQ--DKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMIN  419 (521)
Q Consensus       364 ~----------------------~~~~~~l~~~l~~~l~--d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~  419 (521)
                      .                      -.+..+++|.+.+.++  -.+.+|-++++...+.=....+.. +.+..+|.+..+.-
T Consensus       674 ~~~~~~d~d~~~~~~~~~qq~~il~v~~k~i~~~~kv~s~~~~~s~vve~~C~i~~~~v~~~~~s-F~~p~l~~l~~Fi~  752 (982)
T KOG2022|consen  674 NKKDIIDTDQPEQREEPFQQFPILQVLQKAIPVFEKVLSMWLGLSDVVEASCIIMVKGVRSLLTS-FPEPMLPSLCPFIV  752 (982)
T ss_pred             CCCccccccchhhhccccccCCHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhcccccccc-chhhhHHHHHHHHH
Confidence            1                      0123455666654433  233444455444443333333333 33445555544332


Q ss_pred             ----Ccch-HHHHHHHHHHHHhhc-ccChHH--HhhcHHHHHHhhcCC----CCchHHHHHHHHHHHHHhhhc------h
Q 009975          420 ----NPHY-LYRMTILRAISLLAP-VMGSEI--TCSRLLPVVINASKD----RVPNIKFNVAKVLQSLIPIVD------Q  481 (521)
Q Consensus       420 ----~~~~-~~r~~a~~~l~~l~~-~~~~~~--~~~~il~~l~~~l~d----~~~~VR~~a~~~l~~~~~~~~------~  481 (521)
                          .+.. ..-..+...+..... .+++..  -........+.+..+    +.+++-......+..+.+..+      .
T Consensus       753 r~~~~~~a~tl~l~~~~l~~~~~~~~~~~lv~~~~~~~~q~sl~lf~~~~f~n~~Di~~~~~~~v~~ilkk~P~~~~~~~  832 (982)
T KOG2022|consen  753 RFLTSCLAVTLSLIAACLLAKSTVEQCKPLVGQDMANAFQQSLLLFEQHPFSNQPDIYLQLIGFVRQILKKIPKFLEPSM  832 (982)
T ss_pred             HhccchHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHhCcCccccch
Confidence                2211 000111111111111 111100  001111122222222    245566666667766665432      2


Q ss_pred             HHHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHHh
Q 009975          482 SMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHV  517 (521)
Q Consensus       482 ~~~~~~~~~~l~~l~~D~~~~vr~~a~~al~~l~~~  517 (521)
                      ..+...+++.-.++++-+++-.-..+..-+..+...
T Consensus       833 ~~~ts~i~~~a~~ll~~pE~~~i~aa~qF~t~~~~~  868 (982)
T KOG2022|consen  833 LAFTSLILICAFILLNSPEPTTIRAASQFLTALATY  868 (982)
T ss_pred             HHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHhh
Confidence            356677887777888887776666666666665543

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=90.14  E-value=36  Score=38.07  Aligned_cols=70  Identities=13%  Similarity=0.126  Sum_probs=46.0

Q ss_pred             hhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChh--h-hHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Q 009975          330 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG--F-FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAE  399 (521)
Q Consensus       330 ~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~--~-~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~  399 (521)
                      ...+..+++.+++.+-.+...++..|..+......+  + .....++.+.+++...+..+-+.++.+|..+..
T Consensus       529 ~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln  601 (2195)
T KOG2122|consen  529 HNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLN  601 (2195)
T ss_pred             hhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhc
Confidence            345666666666666666666666665554433332  1 223357888899999998888888888887764

>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 []

Probab=89.89  E-value=6.6  Score=29.59  Aligned_cols=16  Identities=0%  Similarity=0.113  Sum_probs=8.6

Q ss_pred             hHHHHHHHHHHHHhhh
Q 009975          306 PDVRLNIISKLDQVNQ  321 (521)
Q Consensus       306 ~~vr~~a~~~l~~~~~  321 (521)
                      ..-|..++.+++.+.+
T Consensus        29 ~~ek~~~l~si~~lI~   44 (107)
T PF08064_consen   29 IPEKKRALRSIEELIK   44 (107)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            4445555555555555

; GO: 0004674 protein serine/threonine kinase activity

>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM

Probab=89.87  E-value=8.8  Score=30.65  Aligned_cols=86  Identities=21%  Similarity=0.224  Sum_probs=56.0

Q ss_pred             HHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcChh----hhhhhhHHHHHHhcCC-CC-hH--HHHHHHHHHHHHHHH
Q 009975          134 KTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ----DCVAHILPVIVNFSQD-KS-WR--VRYMVANQLYELCEA  205 (521)
Q Consensus       134 ~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~----~~~~~l~~~l~~~~~d-~~-~~--vR~~~~~~l~~i~~~  205 (521)
                      -.+....+.+-+...++.+...|+.++..+.++.++.    .....++..+.+++.+ .. +.  ||..+.+.+...+..
T Consensus        40 ~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~  119 (140)
T PF00790_consen   40 AKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEA  119 (140)
T ss_dssp             HHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHH
Confidence            3455666666677788888888888888888887643    2233456666665543 22 22  888888888888888


Q ss_pred             hCCCccccchHHHH
Q 009975          206 VGPEPTRMDLVPAY  219 (521)
Q Consensus       206 ~~~~~~~~~l~~~l  219 (521)
                      ++.......+...+
T Consensus       120 f~~~~~~~~i~~~y  133 (140)
T PF00790_consen  120 FKSDPELSLIQDTY  133 (140)
T ss_dssp             TTTSTTGHHHHHHH
T ss_pred             HCCCCCchHHHHHH
Confidence            76554444343333

Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....

>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats

Probab=89.86  E-value=12  Score=32.27  Aligned_cols=64  Identities=13%  Similarity=0.137  Sum_probs=35.7

Q ss_pred             HHHHHHhhcCCChhHHHHHHHHHHHHhhhcChhhhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Q 009975          138 MSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEA  205 (521)
Q Consensus       138 ~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~  205 (521)
                      .+.+.....+++.-.|..|+-+.....+.    .....+..++...+.|+..-|++++.-.|.++++.
T Consensus       117 ~~~l~~W~~s~~~W~rR~ai~~~l~~~~~----~~~~~l~~~~~~~~~d~e~fI~KAiGW~LRe~~k~  180 (208)
T cd07064         117 EPVMDEWSTDENFWLRRTAILHQLKYKEK----TDTDLLFEIILANLGSKEFFIRKAIGWALREYSKT  180 (208)
T ss_pred             HHHHHHHHcCCcHHHHHHHHHHHHHHHHc----cCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhcc
Confidence            45555666666666666665443332222    12234555566666666666777666666666654

This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa

>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []

Probab=89.86  E-value=1.1  Score=36.73  Aligned_cols=57  Identities=19%  Similarity=0.127  Sum_probs=27.0

Q ss_pred             CCcHHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhc
Q 009975          381 DKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAP  438 (521)
Q Consensus       381 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~  438 (521)
                      |+--++|.+|.+++..+........-...++..+..-+.| +..+|.-+...+..++.
T Consensus        38 DDGLelRK~ayE~lytlLd~~~~~~~~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~   94 (169)
T PF08623_consen   38 DDGLELRKAAYECLYTLLDTCLSRIDISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQ   94 (169)
T ss_dssp             EGGGHHHHHHHHHHHHHHHSTCSSS-HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHH
T ss_pred             cCcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHH
Confidence            4444555555555555555433332223344444444555 55555555555555543

; PDB: 4A0C_A 1U6G_C.

>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal

Probab=89.60  E-value=15  Score=32.95  Aligned_cols=137  Identities=15%  Similarity=0.138  Sum_probs=78.2

Q ss_pred             HHHHHHHHcCCCc-----HHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHh-hhcCcchHHHHHHHHHHHHhhcccChHH
Q 009975          371 LGALCMQWLQDKV-----YSIRDAAANNLKRLAEEFGPEWAMQHITPQVLE-MINNPHYLYRMTILRAISLLAPVMGSEI  444 (521)
Q Consensus       371 l~~~l~~~l~d~~-----~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~-~l~~~~~~~r~~a~~~l~~l~~~~~~~~  444 (521)
                      .+|.++..+.+++     ..++ .+++.++.+++..|...... ++..+.+ ..++.+.-+++    ++..+.+.+.++ 
T Consensus       112 ~LP~ll~~~d~~~~i~~~~~~~-~~A~~La~~a~~~~~~~La~-il~~ya~~~fr~~~dfl~~----v~~~l~~~f~P~-  184 (262)
T PF14225_consen  112 LLPRLLHAFDDPNPIQPDQECI-EIAEALAQVAEAQGLPNLAR-ILSSYAKGRFRDKDDFLSQ----VVSYLREAFFPD-  184 (262)
T ss_pred             HHHHHHHHhcccccccccHHHH-HHHHHHHHHHHhCCCccHHH-HHHHHHhcCCCCHHHHHHH----HHHHHHHHhCch-
Confidence            5677777777766     3444 45678888886555332222 2222221 22332222222    222233323222 


Q ss_pred             HhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchH-HHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHHh
Q 009975          445 TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS-MVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHV  517 (521)
Q Consensus       445 ~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~-~~~~~~~~~l~~l~~D~~~~vr~~a~~al~~l~~~  517 (521)
                      +...++.++..++.++.+.+|..+++.|..+.+..+.. .....++..+.+++..+-+   ..|.+.++.+...
T Consensus       185 ~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~~~~dlispllrlL~t~~~---~eAL~VLd~~v~~  255 (262)
T PF14225_consen  185 HEFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSPHGADLISPLLRLLQTDLW---MEALEVLDEIVTR  255 (262)
T ss_pred             hHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCCcchHHHHHHHHHhCCccH---HHHHHHHHHHHhh
Confidence            24567778899999999999999999999999876432 2445566666776655432   2455555544443

>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]

Probab=89.43  E-value=55  Score=39.21  Aligned_cols=207  Identities=14%  Similarity=0.160  Sum_probs=109.8

Q ss_pred             hcCCChHHHHHHHHHHHHhhhhhch------hhH--hhhHHHHHHHH-hcCCChHHHHHHHHHhHHHHhhhChhhhHHHH
Q 009975          301 LKDEFPDVRLNIISKLDQVNQVIGI------DLL--SQSLLPAIVEL-AEDRHWRVRLAIIEYIPLLASQLGVGFFDDKL  371 (521)
Q Consensus       301 l~d~~~~vr~~a~~~l~~~~~~~~~------~~~--~~~~~~~l~~~-~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l  371 (521)
                      +...++++|..+......+......      -.+  ...++..+..+ ..|+++.+|......+.   +.+......+..
T Consensus       490 ~~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll~~aia~~~~~i~~~v~~~l~---~~~~~~laQ~~~  566 (2341)
T KOG0891|consen  490 LEADDSEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALLTVAIADTDPDIRIRVLSSLN---ERFDAQLAQPDL  566 (2341)
T ss_pred             HhcccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHhccCCCcchhhhHHhhhc---cchhhhhcCchh
Confidence            3455677777776666555433221      001  23333333332 35666777766655544   111122223445


Q ss_pred             HHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHh--------hhcCcchHHHHHHHHHHHHhhc--ccC
Q 009975          372 GALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLE--------MINNPHYLYRMTILRAISLLAP--VMG  441 (521)
Q Consensus       372 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~--------~l~~~~~~~r~~a~~~l~~l~~--~~~  441 (521)
                      ....+..+.|..-..+.++...++.++..-.     ..++|.+..        +.-+...++......-+..+..  ...
T Consensus       567 lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~-----a~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~~~~~  641 (2341)
T KOG0891|consen  567 LRLLFIALHDENFAIQELATVIIGRLSSYNP-----AYVLPSLRKTLLELLTELEFSGMARTKEESAKLLCELIISSPVL  641 (2341)
T ss_pred             HHHHHHHhhhhhhhhHHhHHhhccccccccH-----HHHhHHHHHHHHHHhchhhhcchHHhHHHHHHHhhHHHHHHHHH
Confidence            5566677788888888888777776654211     223333332        1112222222222222222221  011


Q ss_pred             hHHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhch--HHHHhhHHHHHHHhcCC-CCccHHHHHHHHHHHHH
Q 009975          442 SEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ--SMVEKTIRPCLVELTED-PDVDVRFFATQAIQSID  515 (521)
Q Consensus       442 ~~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~--~~~~~~~~~~l~~l~~D-~~~~vr~~a~~al~~l~  515 (521)
                      ...+...++-.++..+.|+...+-.++..+++.++...|.  ..+.....+.+.+...| ...--|..+.+++..+.
T Consensus       642 i~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~~~~~~~~~~l~~~s~~~rr~aslk~l~~l~  718 (2341)
T KOG0891|consen  642 ISPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVDELFSLIIKMLQDQSSLGKRLAALKALGQLE  718 (2341)
T ss_pred             HHhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccchHHHHHHHHHHHhhhhhchhHHHHHhhhhh
Confidence            1223455667778888999999999999999999988772  22333555555554444 34455666777766654

>cd06561 AlkD_like A new structural DNA glycosylase

Probab=89.03  E-value=13  Score=31.61  Aligned_cols=64  Identities=16%  Similarity=0.136  Sum_probs=40.6

Q ss_pred             HHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccc
Q 009975          217 PAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPL  283 (521)
Q Consensus       217 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~  283 (521)
                      +.+.....+++.-+|.++...+......   +...+.++..+..+..|++..||.+...++..++..
T Consensus       108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~---~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~  171 (197)
T cd06561         108 DLLEEWAKSENEWVRRAAIVLLLRLIKK---ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKK  171 (197)
T ss_pred             HHHHHHHhCCcHHHHHHHHHHHHHHHHh---cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhh
Confidence            6666777777777776666655554433   122345566666667777777777777777776654

This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=88.86  E-value=20  Score=33.48  Aligned_cols=183  Identities=10%  Similarity=0.073  Sum_probs=111.3

Q ss_pred             hhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhh-Chh--hhH-------HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Q 009975          330 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL-GVG--FFD-------DKLGALCMQWLQDKVYSIRDAAANNLKRLAE  399 (521)
Q Consensus       330 ~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~-~~~--~~~-------~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~  399 (521)
                      ..+++.+...+..-++..|..+...+..+...- |..  ...       +.++..+....++++...-  +...+...++
T Consensus        75 ~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~--~g~mlRec~k  152 (335)
T PF08569_consen   75 SDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALN--CGDMLRECIK  152 (335)
T ss_dssp             HTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHH--HHHHHHHHTT
T ss_pred             hCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccch--HHHHHHHHHh
Confidence            567777777777777888888888777776553 221  111       3455566666665554331  1111222111


Q ss_pred             H--hCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhccc---ChHHH---hhcHHHHHHhhcCCCCchHHHHHHHH
Q 009975          400 E--FGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVM---GSEIT---CSRLLPVVINASKDRVPNIKFNVAKV  471 (521)
Q Consensus       400 ~--~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~---~~~~~---~~~il~~l~~~l~d~~~~VR~~a~~~  471 (521)
                      .  +.........+-.+.+....++..+-..|..++..+....   ..+++   .+.+......++..++.-.|..+++.
T Consensus       153 ~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkL  232 (335)
T PF08569_consen  153 HESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKL  232 (335)
T ss_dssp             SHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHH
T ss_pred             hHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHH
Confidence            0  0001112344455667788889998888888888876432   22222   34566788889999999999999999


Q ss_pred             HHHHHhhhchHH-----H-HhhHHHHHHHhcCCCCccHHHHHHHHHHHH
Q 009975          472 LQSLIPIVDQSM-----V-EKTIRPCLVELTEDPDVDVRFFATQAIQSI  514 (521)
Q Consensus       472 l~~~~~~~~~~~-----~-~~~~~~~l~~l~~D~~~~vr~~a~~al~~l  514 (521)
                      |+.+...-..-.     + ...-+-.+-.++.|+..+||..|-+.++-.
T Consensus       233 L~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvF  281 (335)
T PF08569_consen  233 LGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVF  281 (335)
T ss_dssp             HHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHH
T ss_pred             HHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHH
Confidence            999986432211     1 144566666789999999999999888754

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>PF14222 MOR2-PAG1_N: Cell morphogenesis N-terminal

Probab=88.41  E-value=31  Score=34.98  Aligned_cols=297  Identities=14%  Similarity=0.129  Sum_probs=139.9

Q ss_pred             hHHHHHHhcCCC--hHHHHHHHHHhHHHHHhhhCH----H-------HHHHhhhHHHHHhccC-CcHHHHHHHHHHHHcc
Q 009975          215 LVPAYVRLLRDN--EAEVRIAAAGKVTKFCRILNP----E-------LAIQHILPCVKELSSD-SSQHVRSALASVIMGM  280 (521)
Q Consensus       215 l~~~l~~~l~d~--~~~vr~~a~~~l~~l~~~~~~----~-------~~~~~~~~~l~~~~~d-~~~~vr~~~~~~l~~i  280 (521)
                      ++..+-++..+.  +.+++.+.++.|..+..-+..    +       .+.+.+.|...++... ++|.+-.-+..+   +
T Consensus       130 Fm~~l~~~f~~~h~~~~ik~A~~~~l~~lLlPvA~~~~~evn~P~W~~~v~~i~~~~~~~~~K~khw~~afPL~t~---l  206 (552)
T PF14222_consen  130 FMQSLAKFFLEAHKKSDIKHAYCEVLVELLLPVAATATAEVNHPKWKEAVETIYPRAAKMMSKPKHWNVAFPLVTT---L  206 (552)
T ss_pred             HHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHH---H
Confidence            444444444333  567888888888776553311    1       2234455565665544 445442222222   2


Q ss_pred             ccccChHHHHHhHHH-HHHH---hhcCCChHHHHHHHHHHHHhhhh-h---c---hhhHhhhHHHHHHHHh--cCCChHH
Q 009975          281 APLLGKDATIEQLLP-IFLS---LLKDEFPDVRLNIISKLDQVNQV-I---G---IDLLSQSLLPAIVELA--EDRHWRV  347 (521)
Q Consensus       281 ~~~~~~~~~~~~l~~-~l~~---~l~d~~~~vr~~a~~~l~~~~~~-~---~---~~~~~~~~~~~l~~~~--~~~~~~v  347 (521)
                      .=.-+++.+.+.+.+ .+..   -++|.  ..|..++.++.++.-. +   .   .......+-+.+..++  +.++|-.
T Consensus       207 LCvS~~e~F~~~W~~~~i~~~~~klKdk--~~r~~~l~~l~RLlWvYL~~r~~Es~n~T~krL~~i~~~lfp~~kk~~i~  284 (552)
T PF14222_consen  207 LCVSPKEFFLSNWLPSLIESLISKLKDK--ETRPVALECLSRLLWVYLVYRCPESLNNTTKRLDSIFKLLFPKGKKGWIP  284 (552)
T ss_pred             HhcCcHHHHHHHHHHHHHHHHHhhcCCh--hhhHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHccCCCCcccC
Confidence            212255666666663 5443   35555  8899999999887543 2   0   1111122222222222  2334544


Q ss_pred             HH-HHHHHhHHHHhhhChhhh----HHHHHHHHHHHcC-----CCcHHHHHHHHHHHHHHHHHhCHHHHHh---------
Q 009975          348 RL-AIIEYIPLLASQLGVGFF----DDKLGALCMQWLQ-----DKVYSIRDAAANNLKRLAEEFGPEWAMQ---------  408 (521)
Q Consensus       348 r~-~~~~~l~~l~~~~~~~~~----~~~l~~~l~~~l~-----d~~~~vr~~a~~~l~~l~~~~~~~~~~~---------  408 (521)
                      +. ..++.+-.+...+|....    ..-+.|++..-..     .-+++=-.-++.++-.+...+.......         
T Consensus       285 ~D~~~~~~lv~ii~~I~~~~~df~~~~iI~~LL~~~~~~s~~~~l~pERm~IgIRA~l~Il~~~e~~e~p~~p~~~~~~~  364 (552)
T PF14222_consen  285 RDPEPLNPLVQIIRFIGYKHLDFAFRNIIFPLLNVSFNGSSLENLNPERMIIGIRAFLAILSDLEQKEKPPPPPPTSDPS  364 (552)
T ss_pred             CChhhhhhHHHHHHhHhhhCcchHHHHHHHHHHccccccccccccChhHHHHHHHHHHHHHHhhccCCCCCCCCCcCCCC
Confidence            55 455555555555554322    3334444432221     2234444456666666665542211000         


Q ss_pred             ------------hhHHHHHhhhcCcchHHHHHHHHHHHHhhc----ccChHHHhhcH----------HHHHHhhcCCCCc
Q 009975          409 ------------HITPQVLEMINNPHYLYRMTILRAISLLAP----VMGSEITCSRL----------LPVVINASKDRVP  462 (521)
Q Consensus       409 ------------~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~----~~~~~~~~~~i----------l~~l~~~l~d~~~  462 (521)
                                  ..++ .....++.....-.....+++.+..    .+|.....+.-          -.+-+..-.|.. 
T Consensus       365 ~~~~~~~~~~~~~~l~-~~~~~~~~i~~~~~~~~~~l~~il~~cD~~~G~~~~~~~~~~~~~~~t~~~~f~f~~~~d~~-  442 (552)
T PF14222_consen  365 GNTLRVKYTPSNEYLS-NEIAKNSGIREYYEEFCRALGKILRLCDNTFGSQLWLDEKQSSSKPKTPFSSFSFGRNDDMV-  442 (552)
T ss_pred             CcccccccCccccccc-chhhccccHHHHHHHHHHHHHHHHHHHHHHhchhhccCcccccCCCCCCccccccccccccc-
Confidence                        0111 0001111112222344445555543    33432211100          001111111211 


Q ss_pred             hHHHHHHHHHHHHHhhh----chHHHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHHhh
Q 009975          463 NIKFNVAKVLQSLIPIV----DQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVM  518 (521)
Q Consensus       463 ~VR~~a~~~l~~~~~~~----~~~~~~~~~~~~l~~l~~D~~~~vr~~a~~al~~l~~~~  518 (521)
                      .-.......+....+..    +...-...+...|.+..-..|++||..|..+|+.+....
T Consensus       443 ~~~~~~~~Lf~t~i~aiPrcL~~~i~~~~lielL~R~tvHvd~~I~~~A~~aLk~la~~~  502 (552)
T PF14222_consen  443 TDQKPQLDLFRTCIQAIPRCLPSSIPFKSLIELLCRGTVHVDPNIRESAAQALKRLARDK  502 (552)
T ss_pred             ccccchhHHHHHHHHHccccCCCCCcHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHcC
Confidence            11133334444444433    223334778888999889999999999999999988654

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]

Probab=88.30  E-value=17  Score=31.77  Aligned_cols=68  Identities=12%  Similarity=0.193  Sum_probs=46.1

Q ss_pred             HhHHHHHHHhhcCC-CCcchhhhhhhhhhhcCCCChHH-----HHHHHHHHHHhcCCCChHHHHHHHHhHHHHH
Q 009975           58 DWYIPLVKRLAAGE-WFTARVSACGLFHIAYPSAPDIL-----KTELRSIYTQLCQDDMPMVRRSAASNLGKFA  125 (521)
Q Consensus        58 ~~l~p~i~~~~~~~-~~~~r~~~~~~~~~~~~~~~~~~-----~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~  125 (521)
                      -++.|++.....+. ....|.++++.++++.+..+.++     ..+++|+........+..-+..|...++.+.
T Consensus       123 lylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~GSelSKtvA~fIlqKIl  196 (293)
T KOG3036|consen  123 LYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMESGSELSKTVATFILQKIL  196 (293)
T ss_pred             hhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhcccHHHHHHHHHHHHHHh
Confidence            46667775544433 45778999999999998877663     3556677777666666666666666666654

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=88.03  E-value=24  Score=33.40  Aligned_cols=69  Identities=20%  Similarity=0.245  Sum_probs=49.0

Q ss_pred             cHHHHHHhhcCCCC-chHHHHHHHHHHHHHhhhchH--HHH-hhHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 009975          448 RLLPVVINASKDRV-PNIKFNVAKVLQSLIPIVDQS--MVE-KTIRPCLVELTEDPDVDVRFFATQAIQSIDH  516 (521)
Q Consensus       448 ~il~~l~~~l~d~~-~~VR~~a~~~l~~~~~~~~~~--~~~-~~~~~~l~~l~~D~~~~vr~~a~~al~~l~~  516 (521)
                      .++..++.+|+..+ |.+=.-|+.=++..+.+++.-  .+. -.....+-++++.+|++||..|..|++.+..
T Consensus       366 ellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~  438 (442)
T KOG2759|consen  366 ELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMV  438 (442)
T ss_pred             HHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence            46677777776554 556667788888888776432  222 2245566678999999999999999998864

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=87.94  E-value=51  Score=36.99  Aligned_cols=72  Identities=17%  Similarity=0.145  Sum_probs=50.1

Q ss_pred             HhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchh---hHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhh
Q 009975          291 EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID---LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL  362 (521)
Q Consensus       291 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~  362 (521)
                      ..++..+++.|+....-|..++|-+|-.+.-.-..+   .+....++.+.+++.+++..+-+..+.++-.+..+-
T Consensus       529 ~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~R  603 (2195)
T KOG2122|consen  529 HNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFR  603 (2195)
T ss_pred             hhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCC
Confidence            356788888999888888777777776665433322   234567888999998888777776666666665443

>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=87.90  E-value=11  Score=33.67  Aligned_cols=131  Identities=18%  Similarity=0.256  Sum_probs=66.9

Q ss_pred             hcCCChHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHhcCC------ChHHHHHHHHHhHHHHhhhC--hhhhHHHHH
Q 009975          301 LKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDR------HWRVRLAIIEYIPLLASQLG--VGFFDDKLG  372 (521)
Q Consensus       301 l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~------~~~vr~~~~~~l~~l~~~~~--~~~~~~~l~  372 (521)
                      +.+.+.+.|.+|++++..=.   |.    ..++|.|...+.+.      +-..-..++.....+.+.-.  -+.+...++
T Consensus       207 ~dEs~~~~r~aAl~sLr~ds---Gl----hQLvPYFi~f~~eqit~Nl~nl~~LtTv~~m~~sLL~N~~iFvdPY~hqlm  279 (450)
T COG5095         207 LDESDEQTRDAALESLRNDS---GL----HQLVPYFIHFFNEQITKNLKNLEKLTTVVMMYSSLLKNKYIFVDPYLHQLM  279 (450)
T ss_pred             HHHHHHHHHHHHHHHhccCc---cH----HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCceeecHHHHHHH
Confidence            44555667777766654321   11    34455554444321      11222222222223322211  134556678


Q ss_pred             HHHHHHcC------C----CcHHHHHHHHHHHHHHHHHhCHHHH--HhhhHHHHHhhhcC--cchHHHHHHHHHHHHhhc
Q 009975          373 ALCMQWLQ------D----KVYSIRDAAANNLKRLAEEFGPEWA--MQHITPQVLEMINN--PHYLYRMTILRAISLLAP  438 (521)
Q Consensus       373 ~~l~~~l~------d----~~~~vr~~a~~~l~~l~~~~~~~~~--~~~l~~~l~~~l~~--~~~~~r~~a~~~l~~l~~  438 (521)
                      |.++.++-      +    ....+|..|+..++.++..++....  ...+...+.+..-|  .-+.....|+..++.+..
T Consensus       280 PSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~YktLkPRvtrTllKafLD~~k~~sT~YGalkgls~l~k  359 (450)
T COG5095         280 PSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSYKTLKPRVTRTLLKAFLDREKTESTQYGALKGLSILSK  359 (450)
T ss_pred             HHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhhhhhchHHHHHHHHHHHhcccccchhhhhhhhhhhhch
Confidence            87776641      2    2346999999999999988876432  23333333333223  235556677777666654

>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain

Probab=87.87  E-value=9  Score=29.28  Aligned_cols=37  Identities=16%  Similarity=0.226  Sum_probs=27.7

Q ss_pred             hhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChhh
Q 009975          330 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF  366 (521)
Q Consensus       330 ~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~  366 (521)
                      ..++..+.+-+++++|++...++..+..+.+++|..+
T Consensus        36 ~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f   72 (115)
T cd00197          36 KEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERF   72 (115)
T ss_pred             HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHH
Confidence            4556666666677788888888888888888887754

The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra

>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]

Probab=87.78  E-value=30  Score=34.15  Aligned_cols=313  Identities=14%  Similarity=0.081  Sum_probs=150.9

Q ss_pred             HHHHHHHHhcCCC---ChHHHHHHHHhHHHHHH--hhCchhhHH--HHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcCh
Q 009975           97 ELRSIYTQLCQDD---MPMVRRSAASNLGKFAA--TVEPAHLKT--DIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP  169 (521)
Q Consensus        97 ~l~~~l~~l~~~~---~~~vr~~a~~~l~~l~~--~~~~~~~~~--~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~  169 (521)
                      .++..+..++++.   +..+-..+.++++...+  .++.+.+..  -++.+....++  ....-..|.+++..+......
T Consensus       153 ~~L~~l~~lLe~~~l~~~~~l~~Vl~~l~SWl~~~~~~~d~v~a~~pLi~l~F~sl~--~~~lhe~At~cic~ll~~~~~  230 (559)
T KOG2081|consen  153 KVLVFLSDLLERSDLKSSDDLEQVLRCLGSWLRLHVFPPDQVLASFPLITLAFRSLS--DDELHEEATECICALLYCSLD  230 (559)
T ss_pred             HHHHHHHHHHhhcCCChhhHHHHHHHHHhhhhhhccCCHHHHHhhhHHHHHHHHHcc--cchhhHHHHHHHHHHHHHhhh
Confidence            3444444444433   24566777777777665  344333322  34455555555  333455566666665544322


Q ss_pred             h-hh---hh------hhHHH-HHHhcCCCChHHHHHHHHHHHHHHHHhCCC--ccccchHHH---HHHhcCCChHHHHHH
Q 009975          170 Q-DC---VA------HILPV-IVNFSQDKSWRVRYMVANQLYELCEAVGPE--PTRMDLVPA---YVRLLRDNEAEVRIA  233 (521)
Q Consensus       170 ~-~~---~~------~l~~~-l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~--~~~~~l~~~---l~~~l~d~~~~vr~~  233 (521)
                      - ..   ..      .+++. +.......+.+-+.+.++.+..+++.+-..  ..+++.++.   +.-....++++|-++
T Consensus       231 ~~~~~~~~~~l~~~v~~L~~~~~~a~~~~d~d~~~a~~RIFtel~eaf~~~i~~np~~~l~~vellLl~~~h~~~evie~  310 (559)
T KOG2081|consen  231 RSEGLPLAAILFIGVIILETAFHLAMAGEDLDKNEAICRIFTELGEAFVVLISTNPEEFLRIVELLLLVAGHNDTEVIEA  310 (559)
T ss_pred             hhccCchhHHHhccccccchHHHHhhcccCHHHHHHHHHHHHHHHHHHHHHHhhCCCcchhHHHHHHHhccCCchhhhhh
Confidence            1 11   01      12222 222334566677777888887777654211  011233333   333445666677777


Q ss_pred             HHHhHHHHHhhhCH---HHHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccChHHHHHhHHHHHHHhhc---CCChH
Q 009975          234 AAGKVTKFCRILNP---ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLK---DEFPD  307 (521)
Q Consensus       234 a~~~l~~l~~~~~~---~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~---d~~~~  307 (521)
                      .......+.+.+-.   ......+-|++.+++            .++..=+..-.           ....+.   ++..+
T Consensus       311 SF~fW~~lse~l~~~~~~~~~~~frpy~~rLv------------s~l~~h~qlp~-----------~~~~l~Ee~~~f~~  367 (559)
T KOG2081|consen  311 SFNFWYSLSEELTLTDDDEALGIFRPYFLRLV------------SLLKRHVQLPP-----------DQFDLPEEESEFFE  367 (559)
T ss_pred             hHHhhhhhHHHHhccccHHHHHHhHHHHHHHH------------HHHHHHccCCC-----------ccccCccchhHHHH
Confidence            66666665554311   111111222222221            11111111000           000111   22345


Q ss_pred             HHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChh--hhHHHHHHHHHHHcCCCcHH
Q 009975          308 VRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG--FFDDKLGALCMQWLQDKVYS  385 (521)
Q Consensus       308 vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~  385 (521)
                      .|......+..++-.+|.+.-.+.+.-.+.+  +...|..-++++..+..+++.+.++  ...+.++..+.++  +....
T Consensus       368 fR~~v~dvl~Dv~~iigs~e~lk~~~~~l~e--~~~~We~~EAaLF~l~~~~~~~~~~e~~i~pevl~~i~nl--p~Q~~  443 (559)
T KOG2081|consen  368 FRLKVGDVLKDVAFIIGSDECLKQMYIRLKE--NNASWEEVEAALFILRAVAKNVSPEENTIMPEVLKLICNL--PEQAP  443 (559)
T ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHcc--CCCchHHHHHHHHHHHHHhccCCccccchHHHHHHHHhCC--ccchh
Confidence            6666777777776666654322222222222  5677888888888888888877653  3344444444332  22333


Q ss_pred             HHHHHHHHHHHHHHHhCHHHH-HhhhHHHHHhhhcCcchHHHHHHHHHHHHhhccc
Q 009975          386 IRDAAANNLKRLAEEFGPEWA-MQHITPQVLEMINNPHYLYRMTILRAISLLAPVM  440 (521)
Q Consensus       386 vr~~a~~~l~~l~~~~~~~~~-~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~  440 (521)
                      +|..++..+|.+.+.+..... .+.+...+...+....  ...++..++..+...+
T Consensus       444 ~~~ts~ll~g~~~ew~~~~p~~le~v~~~~~~~~~~~~--~as~~a~~~~~i~~~c  497 (559)
T KOG2081|consen  444 LRYTSILLLGEYSEWVEQHPELLEPVLRYIRQGLQLKR--LASAAALAFHRICSAC  497 (559)
T ss_pred             HHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhhhcc--hhHHHHHHHHHHHHHH
Confidence            888888888888776654322 2333444444444443  3444444555554433

>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein

Probab=87.76  E-value=8.8  Score=30.64  Aligned_cols=74  Identities=9%  Similarity=0.069  Sum_probs=52.5

Q ss_pred             hhhHHHHHhhhc-CcchHHHHHHHHHHHHhhcccChHHH----hhcHHHH-HHhhcCC---CCchHHHHHHHHHHHHHhh
Q 009975          408 QHITPQVLEMIN-NPHYLYRMTILRAISLLAPVMGSEIT----CSRLLPV-VINASKD---RVPNIKFNVAKVLQSLIPI  478 (521)
Q Consensus       408 ~~l~~~l~~~l~-~~~~~~r~~a~~~l~~l~~~~~~~~~----~~~il~~-l~~~l~d---~~~~VR~~a~~~l~~~~~~  478 (521)
                      ...+..|.+.++ +++.++...|+..+..+.+.+|..+.    ...++.. +.+.+.+   +...||...+..+......
T Consensus        37 k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~  116 (141)
T cd03565          37 KDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADA  116 (141)
T ss_pred             HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHH
Confidence            445566666665 46777888888888888888887653    2567765 6676653   3458899999888888877


Q ss_pred             hch
Q 009975          479 VDQ  481 (521)
Q Consensus       479 ~~~  481 (521)
                      +..
T Consensus       117 f~~  119 (141)
T cd03565         117 FRG  119 (141)
T ss_pred             hCC
Confidence            654

The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.

>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]

Probab=87.62  E-value=33  Score=34.46  Aligned_cols=150  Identities=7%  Similarity=0.066  Sum_probs=90.2

Q ss_pred             hHHHHHHHHhcCC--ChHHHHHHHHHhHHHHhhhChhhhHHHHHHHHHHH--------cCCCcHHHHHHHHHHHHHHHHH
Q 009975          331 SLLPAIVELAEDR--HWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQW--------LQDKVYSIRDAAANNLKRLAEE  400 (521)
Q Consensus       331 ~~~~~l~~~~~~~--~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~--------l~d~~~~vr~~a~~~l~~l~~~  400 (521)
                      .++..+...+.+.  +|..-...+.+++++...++...-...++..+..+        -+|+..-|-...+..+|..-.-
T Consensus       481 ~mi~Klarq~dg~EWsw~nlNtLcWAIGSISGamsE~~EkrF~VnviKdLL~LcemKrgKdnKAVvASnIMyvvGQYpRF  560 (1053)
T COG5101         481 YMIGKLARQLDGKEWSWNNLNTLCWAIGSISGAMSEVNEKRFFVNVIKDLLALCEMKRGKDNKAVVASNIMYVVGQYPRF  560 (1053)
T ss_pred             HHHHHHHHHhcCCccchhhHhHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhecceeeeeccchHH
Confidence            3444444444443  56666778888888888877653333333333222        2454444444444444443333


Q ss_pred             hCHHH-HHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChHH----------HhhcHHHHHHhhcCCCCchHHHHHH
Q 009975          401 FGPEW-AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI----------TCSRLLPVVINASKDRVPNIKFNVA  469 (521)
Q Consensus       401 ~~~~~-~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~----------~~~~il~~l~~~l~d~~~~VR~~a~  469 (521)
                      +...| +...++..+.+++...+..++..||..+-.+.+.+...+          |..+++..+-+.-.|-.+.-+...-
T Consensus       561 Lkahw~FLkTVv~KLFEFMhE~HEGvqDMACDtFiKIvqKC~~hFv~Qq~gesEpFI~~Iirnl~ktT~dL~pqQ~htfY  640 (1053)
T COG5101         561 LKAHWSFLKTVVKKLFEFMHEDHEGVQDMACDTFIKIVQKCPVHFVTQQEGESEPFIVYIIRNLPKTTGDLEPQQKHTFY  640 (1053)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhHHhhhHHHHHHHHHhCcHHHhhcCCCCCCcHHHHHHHhhhhhcccCChHHHhHHH
Confidence            32222 456788888888888899999999999999998765433          3334444444445666666666777


Q ss_pred             HHHHHHHhhhc
Q 009975          470 KVLQSLIPIVD  480 (521)
Q Consensus       470 ~~l~~~~~~~~  480 (521)
                      ++++.+....+
T Consensus       641 eAcg~vIse~p  651 (1053)
T COG5101         641 EACGMVISEVP  651 (1053)
T ss_pred             HHHhHHHhccc
Confidence            77777766543

>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=87.51  E-value=38  Score=35.07  Aligned_cols=230  Identities=15%  Similarity=0.184  Sum_probs=125.2

Q ss_pred             CcchhhhhhhhhhhcCCCChHHHHHHHHHHHH---hc-----CCCChHHHHHH-HHhHHHHHHhhCch-----hhHHHHH
Q 009975           73 FTARVSACGLFHIAYPSAPDILKTELRSIYTQ---LC-----QDDMPMVRRSA-ASNLGKFAATVEPA-----HLKTDIM  138 (521)
Q Consensus        73 ~~~r~~~~~~~~~~~~~~~~~~~~~l~~~l~~---l~-----~~~~~~vr~~a-~~~l~~l~~~~~~~-----~~~~~l~  138 (521)
                      +..|-.+-.++-.++..-++-....++..+.+   +.     ++-+..+++-| -.+.|.-+..+...     -..+.++
T Consensus       411 y~lRPCaE~L~~~lF~~ysqllvP~~l~~i~~a~~~~~pt~~~~l~a~L~KDAiYaa~g~~a~~l~~~~dF~~Wl~~~ll  490 (978)
T KOG1993|consen  411 YNLRPCAEKLYKDLFDAYSQLLVPPVLDMIYSAQELQSPTVTEDLTALLLKDAIYAAFGLAAYELSNILDFDKWLQEALL  490 (978)
T ss_pred             eccchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhC
Confidence            45666666666665544444444555555532   22     22233344433 34444433333321     1334555


Q ss_pred             HHHHHhhcCCChhHHHHHHHHHHHHhhhcChhhhhhhhHHHHHHhcCCC-ChHHHHHHHHHHHHHHHHhCCCccccchHH
Q 009975          139 SIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDK-SWRVRYMVANQLYELCEAVGPEPTRMDLVP  217 (521)
Q Consensus       139 ~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~-~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~  217 (521)
                      |-+. -..++...+|+-.+-.++.=.+.--+.+.++.+...+..+++|. +-.||-++++.+.-..+-+.  ...+.+.|
T Consensus       491 pEl~-~~~~~~RiiRRRVa~ilg~Wvsvq~~~e~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~n--F~~dsFlp  567 (978)
T KOG1993|consen  491 PELA-NDHGNSRIIRRRVAWILGQWVSVQQKLELKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWN--FSEDSFLP  567 (978)
T ss_pred             HHhh-hcccchhHHHHHHHHHHhhhhheechHhHHHHHHHHHHHhcCccccceeehHHHHHHHHhhhhcc--CChhhhhh
Confidence            5544 12233445677777777776664434456666777788888887 67799999999887765432  11222333


Q ss_pred             HH-------HHhcCC-ChHHHHHHHHHhHHHHHhhhCHH--HHHHh---hhHHHHHhccCCcHHHHHHHHHHHHcccccc
Q 009975          218 AY-------VRLLRD-NEAEVRIAAAGKVTKFCRILNPE--LAIQH---ILPCVKELSSDSSQHVRSALASVIMGMAPLL  284 (521)
Q Consensus       218 ~l-------~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~--~~~~~---~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~  284 (521)
                      .+       .++++. ++-+.|...+..++.+....++.  +....   ++|.+-+-. .+++-.|.+.+..+.++...+
T Consensus       568 ~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P~~~~ivq~lp~LWe~s-~~e~lLr~alL~~L~~lV~al  646 (978)
T KOG1993|consen  568 YLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHIAPYASTIVQYLPLLWEES-EEEPLLRCALLATLRNLVNAL  646 (978)
T ss_pred             hHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhh-ccCcHHHHHHHHHHHHHHHHh
Confidence            33       233332 23456667777777766655432  11122   333333322 356678999999999998888


Q ss_pred             ChHH--HHHhHHHHHHHhhcCCCh
Q 009975          285 GKDA--TIEQLLPIFLSLLKDEFP  306 (521)
Q Consensus       285 ~~~~--~~~~l~~~l~~~l~d~~~  306 (521)
                      |.+.  ....+.|.+.....-++|
T Consensus       647 g~qS~~~~~fL~pVIel~~D~~sP  670 (978)
T KOG1993|consen  647 GAQSFEFYPFLYPVIELSTDPSSP  670 (978)
T ss_pred             ccCCccchHHHHHHHHHhcCCCCC
Confidence            7643  344566665554443333

>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain

Probab=86.76  E-value=13  Score=28.75  Aligned_cols=70  Identities=20%  Similarity=0.272  Sum_probs=48.6

Q ss_pred             hhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchHHHH-----hhHHHHHHHhc--------CCCCccHHHHHHHHHH
Q 009975          446 CSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVE-----KTIRPCLVELT--------EDPDVDVRFFATQAIQ  512 (521)
Q Consensus       446 ~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~~-----~~~~~~l~~l~--------~D~~~~vr~~a~~al~  512 (521)
                      ...++..+.+-|++..+.|+..++++|..++....+.+..     ..++..+....        .++...||..|.+++.
T Consensus        36 ~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~  115 (122)
T cd03572          36 CQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIK  115 (122)
T ss_pred             HHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHH
Confidence            4578889999999999999999999999988875433221     22233333332        2356789999988887


Q ss_pred             HHH
Q 009975          513 SID  515 (521)
Q Consensus       513 ~l~  515 (521)
                      .|-
T Consensus       116 ~if  118 (122)
T cd03572         116 AIF  118 (122)
T ss_pred             HHh
Confidence            653

The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=86.70  E-value=30  Score=33.00  Aligned_cols=146  Identities=12%  Similarity=0.175  Sum_probs=89.3

Q ss_pred             cchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhC------HHHHHHhhhHHHHH-hccCCcHHHHHHHHHHHHccccccC
Q 009975          213 MDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN------PELAIQHILPCVKE-LSSDSSQHVRSALASVIMGMAPLLG  285 (521)
Q Consensus       213 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~------~~~~~~~~~~~l~~-~~~d~~~~vr~~~~~~l~~i~~~~~  285 (521)
                      +.++..+...+.+++......+.-+++.++..-.      ...+.+.++..+.+ .-.|.+-+++++++.++..++--..
T Consensus       314 p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~  393 (604)
T KOG4500|consen  314 PQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVS  393 (604)
T ss_pred             cHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCC
Confidence            4478888888888888888888888888877432      23445556666544 4567788899999999998764332


Q ss_pred             h-HHH-HHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhh-------hchhhHhhhHHHHHHHHhcCCChH-HHHHHHHHh
Q 009975          286 K-DAT-IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV-------IGIDLLSQSLLPAIVELAEDRHWR-VRLAIIEYI  355 (521)
Q Consensus       286 ~-~~~-~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~-------~~~~~~~~~~~~~l~~~~~~~~~~-vr~~~~~~l  355 (521)
                      . ..+ ..-+...++..++-..|.|...-+-++..+...       ++..   ..++..+....+++++. |-...-..+
T Consensus       394 nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn---~~l~ekLv~Wsks~D~aGv~gESnRll  470 (604)
T KOG4500|consen  394 NKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACELAKN---PELFEKLVDWSKSPDFAGVAGESNRLL  470 (604)
T ss_pred             chhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHhcC---HHHHHHHHHhhhCCccchhhhhhhHHH
Confidence            2 221 223555677777777777776665555444321       2211   45566666666666543 333333333


Q ss_pred             HHHHhh
Q 009975          356 PLLASQ  361 (521)
Q Consensus       356 ~~l~~~  361 (521)
                      ..+.++
T Consensus       471 ~~lIkH  476 (604)
T KOG4500|consen  471 LGLIKH  476 (604)
T ss_pred             HHHHHh
Confidence            344433

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=86.55  E-value=30  Score=32.85  Aligned_cols=153  Identities=14%  Similarity=0.144  Sum_probs=86.4

Q ss_pred             HHHHHHHHHHhhcChhHHHHhHHHHHHHhhcCCCCcchhhhhhhhhhhcCCCChHHHHHHHHHHHHhcCCCChHHHHHHH
Q 009975           39 KAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAA  118 (521)
Q Consensus        39 ~a~~~l~~i~~~~~~~~~~~~l~p~i~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~vr~~a~  118 (521)
                      +++..+..+..+..-++..++.+-++..+..++..  |.....-   .. +.   .+......+..++.+.++.+-..+.
T Consensus        65 ~~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~s--r~~lf~~---~a-~~---~k~~~~~~fl~ll~r~d~~iv~~~~  135 (442)
T KOG2759|consen   65 QYVKTFINLLSHIDKDDTVQYVLTLIDDMLSEDRS--RVDLFHD---YA-HK---LKRTEWLSFLNLLNRQDTFIVEMSF  135 (442)
T ss_pred             HHHHHHHHHhchhhhHHHHHHHHHHHHHHHhhCch--HHHHHHH---HH-Hh---hhccchHHHHHHHhcCChHHHHHHH
Confidence            45566677777777777777888888887776543  2222111   11 11   1223345666777788888888777


Q ss_pred             HhHHHHHHhhCc---hhhHHHHHHHHHHhhcC-CChhHHHHHHHHHHHHhhhcCh------hhhhhhhHHHHHHhcCCCC
Q 009975          119 SNLGKFAATVEP---AHLKTDIMSIFEDLTQD-DQDSVRLLAVEGCAALGKLLEP------QDCVAHILPVIVNFSQDKS  188 (521)
Q Consensus       119 ~~l~~l~~~~~~---~~~~~~l~~~l~~l~~d-~~~~vr~~a~~~l~~l~~~~~~------~~~~~~l~~~l~~~~~d~~  188 (521)
                      ..+..++.....   ....+.....+...+++ .+...+..++++|..+...-.-      ....+.+++.+.  ....+
T Consensus       136 ~Ils~la~~g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~v~adg~~~l~~~l~--s~~~~  213 (442)
T KOG2759|consen  136 RILSKLACFGNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAFVIADGVSLLIRILA--STKCG  213 (442)
T ss_pred             HHHHHHHHhccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhheeeecCcchhhHHHHh--ccCcc
Confidence            777766654332   11234455566666655 5566677788888887654110      011122333333  34455


Q ss_pred             hHHHHHHHHHHHHH
Q 009975          189 WRVRYMVANQLYEL  202 (521)
Q Consensus       189 ~~vR~~~~~~l~~i  202 (521)
                      ..+.+..+-++-.+
T Consensus       214 ~QlQYqsifciWlL  227 (442)
T KOG2759|consen  214 FQLQYQSIFCIWLL  227 (442)
T ss_pred             hhHHHHHHHHHHHh
Confidence            66777666666544

>PF05536 Neurochondrin: Neurochondrin

Probab=86.43  E-value=40  Score=34.17  Aligned_cols=151  Identities=11%  Similarity=0.133  Sum_probs=79.1

Q ss_pred             HHHHHHHHhhcCCCh-hHHHHHHHHHHHHhhhcCh-hh-hhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCcc-
Q 009975          136 DIMSIFEDLTQDDQD-SVRLLAVEGCAALGKLLEP-QD-CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPT-  211 (521)
Q Consensus       136 ~l~~~l~~l~~d~~~-~vr~~a~~~l~~l~~~~~~-~~-~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~-  211 (521)
                      .-+|.+.+.+..... .+-..++++|..++..-.. +. .....++.+.+...+ .+.....+...+..+....+.+.. 
T Consensus        98 ~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~lL~~Lls~~~~~~~~  176 (543)
T PF05536_consen   98 SRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN-QSFQMEIALNLLLNLLSRLGQKSWA  176 (543)
T ss_pred             HHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHHHHHHHHhcchhhhh
Confidence            345566665554444 6677777777777733111 11 122244444444433 444566666666666554442211 


Q ss_pred             -----ccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhC--------HHHHHHhhhHHHHHhccC-CcHHHHHHHHHHH
Q 009975          212 -----RMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN--------PELAIQHILPCVKELSSD-SSQHVRSALASVI  277 (521)
Q Consensus       212 -----~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~--------~~~~~~~~~~~l~~~~~d-~~~~vr~~~~~~l  277 (521)
                           ...+++.+.+.+.......+...++.|+.+....+        ...+...+...+..++.+ ..+.-|..+....
T Consensus       177 ~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~sr~~~~~R~~al~La  256 (543)
T PF05536_consen  177 EDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQSRLTPSQRDPALNLA  256 (543)
T ss_pred             hhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence                 11344444444444444555666666666655542        123445556666665544 3455667766666


Q ss_pred             HccccccChH
Q 009975          278 MGMAPLLGKD  287 (521)
Q Consensus       278 ~~i~~~~~~~  287 (521)
                      ..+.+.+|.+
T Consensus       257 a~Ll~~~G~~  266 (543)
T PF05536_consen  257 ASLLDLLGPE  266 (543)
T ss_pred             HHHHHHhChH
Confidence            6666666543

>KOG2229 consensus Protein required for actin cytoskeleton organization and cell cycle progression [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=86.10  E-value=35  Score=33.25  Aligned_cols=330  Identities=11%  Similarity=0.062  Sum_probs=153.9

Q ss_pred             hhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHH---
Q 009975          172 CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE---  248 (521)
Q Consensus       172 ~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---  248 (521)
                      +..++..++...+.--.+..|...+++|.-+-.  ..-....+++..|..++.-.+...|..+...+......++..   
T Consensus        17 FP~el~dLL~~~~~~lp~~Lr~~i~~~LiLLrN--k~~i~~~~LL~lff~l~~~~dk~lRkllythiv~~Ikn~n~~~kn   94 (616)
T KOG2229|consen   17 FPSELKDLLRTNHTVLPPELREKIVKALILLRN--KNLIVAEDLLELFFPLLRCGDKNLRKLLYTHIVTTIKNINKKHKN   94 (616)
T ss_pred             hhHHHHHHHHhccccCCHHHHHHHHHHHHHHhc--cCcCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHhhccc
Confidence            344566667766666778899999988864432  223344678888888888777788888877776666644322   


Q ss_pred             -HHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccChHHHH-HhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhch-
Q 009975          249 -LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATI-EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI-  325 (521)
Q Consensus       249 -~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~-~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~-  325 (521)
                       .....+...+..++.+++..   ++.+++..++....+..+. ..-+.++...+-+.++.|..+++..+-.--..-.. 
T Consensus        95 ~klnkslq~~~fsml~~~d~~---~ak~a~~~~~eL~kr~iW~d~~tV~i~~~acf~~~~ki~vs~l~FfL~~D~~dee~  171 (616)
T KOG2229|consen   95 DKLNKSLQAFMFSMLDQSDST---AAKMALDTMIELYKRNIWNDSKTVNIITTACFSKVPKILVSGLRFFLGADNEDEED  171 (616)
T ss_pred             chHHHHHHHHHHHHHhCCCch---hHHHHHHHHHHHHHhcccccchhHHHHHHHHhccCcHHHHhhhHHhccCCcccccc
Confidence             12222334445556665543   1222222222211111110 01122222222233344443333322110000000 


Q ss_pred             --h---hHh-hhHHHHHHHHhcCCChHHHHHHHHH------------------hHHHHhhhChhhhHHHHHHHHHHHcCC
Q 009975          326 --D---LLS-QSLLPAIVELAEDRHWRVRLAIIEY------------------IPLLASQLGVGFFDDKLGALCMQWLQD  381 (521)
Q Consensus       326 --~---~~~-~~~~~~l~~~~~~~~~~vr~~~~~~------------------l~~l~~~~~~~~~~~~l~~~l~~~l~d  381 (521)
                        +   ... ..+-..+.+..+.....-......+                  ++.+--.-.++.|.+.+.+.+...  .
T Consensus       172 dsd~~~d~dg~~~~~l~~~~vnkktkkr~~kl~~a~k~vkkkqk~~~~~~t~nfs~i~ll~DpQ~fAEkLfk~~~~~--~  249 (616)
T KOG2229|consen  172 DSDSESDEDGPDADALLHQRVNKKTKKRQKKLLRAAKSVKKKQKKKKNAPTFNFSAIHLLHDPQGFAEKLFKQLLAC--K  249 (616)
T ss_pred             ccccccccccccHHHHHHHHHhccchhhHHHHHHHHHHHHHHHhcCCCCCCCCccHHHhhcChhHHHHHHHHHHhhh--h
Confidence              0   000 0011111111111111101111111                  111111123344555565555444  3


Q ss_pred             CcHHHHHHHHHHHHHHHHHhCHHH-HHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChHHHhhcHHHHHHhhcCCC
Q 009975          382 KVYSIRDAAANNLKRLAEEFGPEW-AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDR  460 (521)
Q Consensus       382 ~~~~vr~~a~~~l~~l~~~~~~~~-~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~  460 (521)
                      ...++|...+..+..++   |... +.-.+.|.|..++......+.+....+....-+...++.+.+.+....-....|.
T Consensus       250 er~E~klm~~~lisRli---G~HkL~l~~fY~fl~~yl~phqrDvTqIl~~aaQa~Hd~VP~d~iEpl~k~Ian~FVtD~  326 (616)
T KOG2229|consen  250 ERFEVKLMLMKLISRLI---GIHKLFLFGFYPFLQRYLQPHQRDVTQILAAAAQASHDLVPPDIIEPLLKTIANNFVTDE  326 (616)
T ss_pred             hhHHHHHHHHHHHHHHh---hhhHHHHhhhHHHHHHHcCcchhhHHHHHHHHHHhccCCCChHHhhHHHHHHHHHhcccC
Confidence            44567777666666655   4332 2345778888888887766655444444433333344433333333334445564


Q ss_pred             -CchHHHHHHHHHHHHHhhhchHHHHhhHHHHHHHhcCCCCccHHHHHHHHHHH
Q 009975          461 -VPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQS  513 (521)
Q Consensus       461 -~~~VR~~a~~~l~~~~~~~~~~~~~~~~~~~l~~l~~D~~~~vr~~a~~al~~  513 (521)
                       .+.|-....+++..++...+... .+.++.-|..+....+..| ..|++++-.
T Consensus       327 ~spEv~~vgiN~iREic~RvplaM-teeLLqDLa~YK~sk~K~V-~maarSLI~  378 (616)
T KOG2229|consen  327 NSPEVMAVGINAIREICERVPLAM-TEELLQDLASYKTSKKKVV-MMAARSLIA  378 (616)
T ss_pred             CCcceeehhhhHHHHHHhhcchhh-cHHHHHHHHHHhHHHHHHH-HHHHHHHHH
Confidence             56677778888888887654322 2444444444444444444 444444443

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=86.10  E-value=45  Score=34.42  Aligned_cols=146  Identities=14%  Similarity=0.125  Sum_probs=92.9

Q ss_pred             HHHHHHHHHHcC-CCcHHHHHHHHHHHHHHHHHhCH-------HH-HHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcc
Q 009975          369 DKLGALCMQWLQ-DKVYSIRDAAANNLKRLAEEFGP-------EW-AMQHITPQVLEMINNPHYLYRMTILRAISLLAPV  439 (521)
Q Consensus       369 ~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~-------~~-~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~  439 (521)
                      +.++...+.++. ..+..+-++++.+|..+....+.       .. -.+..+|.+++++...+.++-.+++.++..+...
T Consensus       517 p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d  596 (717)
T KOG1048|consen  517 PSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRD  596 (717)
T ss_pred             HHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccC
Confidence            445555455544 35677888888888887643321       12 3577889999999999999999999999999864


Q ss_pred             cCh-HHHhhcHHHHHHhhcCCCCc------hHHHHHHHHHHHHHh-hhc--hHHHHhhHHHHHHHhcC-CCCccHHHHHH
Q 009975          440 MGS-EITCSRLLPVVINASKDRVP------NIKFNVAKVLQSLIP-IVD--QSMVEKTIRPCLVELTE-DPDVDVRFFAT  508 (521)
Q Consensus       440 ~~~-~~~~~~il~~l~~~l~d~~~------~VR~~a~~~l~~~~~-~~~--~~~~~~~~~~~l~~l~~-D~~~~vr~~a~  508 (521)
                      .-. +.+-.+.+|.++..|-+..+      ++-.+++.+|..++. ...  .+.+...=++.|..+.. -.++.+-..|.
T Consensus       597 ~rnk~ligk~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~nAkdl~~~~g~~kL~~I~~s~~S~k~~kaAs  676 (717)
T KOG1048|consen  597 IRNKELIGKYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLNAKDLLEIKGIPKLRLISKSQHSPKEFKAAS  676 (717)
T ss_pred             chhhhhhhcchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhHHHHHHHHhccChHHHHHHhcccCCHHHHHHHH
Confidence            433 33457788999999877644      555577788877763 221  22333333444444332 23435555555


Q ss_pred             HHHHHH
Q 009975          509 QAIQSI  514 (521)
Q Consensus       509 ~al~~l  514 (521)
                      ..+..|
T Consensus       677 ~vL~~l  682 (717)
T KOG1048|consen  677 SVLDVL  682 (717)
T ss_pred             HHHHHH
Confidence            555544

>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []

Probab=86.04  E-value=13  Score=30.67  Aligned_cols=76  Identities=16%  Similarity=0.037  Sum_probs=52.4

Q ss_pred             CCChHHHHHHHHHhHHHHhhhChhhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHHHH--HhhhHHHHHhhh
Q 009975          342 DRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWA--MQHITPQVLEMI  418 (521)
Q Consensus       342 ~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~--~~~l~~~l~~~l  418 (521)
                      |..-.+|.++.+++..+...+....-...+...+...++| +.++|.-+...+..++........  .+.+.+.+...+
T Consensus        38 DDGLelRK~ayE~lytlLd~~~~~~~~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L  115 (169)
T PF08623_consen   38 DDGLELRKAAYECLYTLLDTCLSRIDISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKTL  115 (169)
T ss_dssp             EGGGHHHHHHHHHHHHHHHSTCSSS-HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHHH
T ss_pred             cCcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHh
Confidence            4456789999999888887766554455668888889999 999999999999888754322211  245666666554

; PDB: 4A0C_A 1U6G_C.

>KOG4524 consensus Uncharacterized conserved protein [Function unknown]

Probab=85.96  E-value=51  Score=35.00  Aligned_cols=90  Identities=13%  Similarity=0.146  Sum_probs=63.2

Q ss_pred             hHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChh--hh---HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHH-
Q 009975          331 SLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG--FF---DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE-  404 (521)
Q Consensus       331 ~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~--~~---~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~-  404 (521)
                      .++..-..++.+++-++|..+++.+..-...+...  .+   .....|.++..+.+.++-+-..|+.++..++...|.= 
T Consensus       803 kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sgDFv  882 (1014)
T KOG4524|consen  803 KILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSGDFV  882 (1014)
T ss_pred             HHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhhHH
Confidence            34444445778999999999999887665554331  11   2234667778888999999999999999998877641 


Q ss_pred             --HHHhhhHHHHHhhhcC
Q 009975          405 --WAMQHITPQVLEMINN  420 (521)
Q Consensus       405 --~~~~~l~~~l~~~l~~  420 (521)
                        .+.+.++|.+..++.+
T Consensus       883 ~sR~l~dvlP~l~~~~~~  900 (1014)
T KOG4524|consen  883 ASRFLEDVLPWLKHLCQD  900 (1014)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence              2346788888766554

>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]

Probab=85.90  E-value=46  Score=34.36  Aligned_cols=125  Identities=14%  Similarity=0.149  Sum_probs=77.9

Q ss_pred             hhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHH
Q 009975          173 VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQ  252 (521)
Q Consensus       173 ~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~  252 (521)
                      ...++..+..+..|+-..||..+...+..+...-+..  ...++..+++-+.|++..+-.-|...|..+....+...  -
T Consensus       302 y~rfievLe~lS~D~L~~vk~raL~ti~~lL~~kPEq--E~~LL~~lVNKlGDpqnKiaskAsylL~~L~~~HPnMK--~  377 (988)
T KOG2038|consen  302 YFRFIEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQ--ENNLLVLLVNKLGDPQNKIASKASYLLEGLLAKHPNMK--I  377 (988)
T ss_pred             HHHHHHHHHHHccccHHHHHHHHHHHHHHHHhCCcHH--HHHHHHHHHHhcCCcchhhhhhHHHHHHHHHhhCCcce--e
Confidence            3456778888999999999999999887776533322  35688999999999998888888888877766554321  1


Q ss_pred             hhhHHHHHhccC--CcHHHHHHHHHHHHccccccChHHHHHhHHHHHHHhh
Q 009975          253 HILPCVKELSSD--SSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLL  301 (521)
Q Consensus       253 ~~~~~l~~~~~d--~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l  301 (521)
                      .++..+..++-.  -+.+....++..+.++.-..........++.+++.++
T Consensus       378 Vvi~EIer~~FRpn~~~ra~Yyav~fLnQ~~Lshke~dvAnrLi~iYF~lF  428 (988)
T KOG2038|consen  378 VVIDEIERLAFRPNVSERAHYYAVIFLNQMKLSHKESDVANRLISIYFSLF  428 (988)
T ss_pred             ehHHHHHHHHcccCccccceeehhhhhhhhHhccchHHHHHHHHHHHHHHH
Confidence            123333333322  2333444455555555433333334555666555444

>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1

Probab=85.89  E-value=8  Score=29.06  Aligned_cols=72  Identities=17%  Similarity=0.349  Sum_probs=49.6

Q ss_pred             HHHHHhhhcCc----chHHHHHHHHHHHHhhcccChHH--HhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchHHH
Q 009975          411 TPQVLEMINNP----HYLYRMTILRAISLLAPVMGSEI--TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMV  484 (521)
Q Consensus       411 ~~~l~~~l~~~----~~~~r~~a~~~l~~l~~~~~~~~--~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~  484 (521)
                      +..+.+.++|.    ...-|..++.+++.+.+..|...  +.++++-.+...++  .++.|..+++++..+...++.+..
T Consensus        13 l~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~--~~eL~~~al~~W~~~i~~L~~~~l   90 (107)
T smart00802       13 LAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALE--IPELRSLALRCWHVLIKTLKEEEL   90 (107)
T ss_pred             HHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHHhCCHHHH
Confidence            34444445553    34568889999999998666432  34555555555665  456999999999999998887654

Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.

>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule)

Probab=85.76  E-value=16  Score=28.89  Aligned_cols=76  Identities=16%  Similarity=0.108  Sum_probs=53.3

Q ss_pred             HHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcChh----hhhhhhHHHHHHhcCC---CChHHHHHHHHHHHHHHHHh
Q 009975          134 KTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ----DCVAHILPVIVNFSQD---KSWRVRYMVANQLYELCEAV  206 (521)
Q Consensus       134 ~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~----~~~~~l~~~l~~~~~d---~~~~vR~~~~~~l~~i~~~~  206 (521)
                      -.+.+..+.+-++..++.+...|+.+|..+.++.++.    .....++.-+.+++..   .+..||..+.+.+......+
T Consensus        35 ~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f  114 (133)
T cd03561          35 PKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESF  114 (133)
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence            3455666666677778888999999999998887762    1222333335555543   57789999999998888887


Q ss_pred             CCC
Q 009975          207 GPE  209 (521)
Q Consensus       207 ~~~  209 (521)
                      +..
T Consensus       115 ~~~  117 (133)
T cd03561         115 GGH  117 (133)
T ss_pred             cCC
Confidence            764

It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me

>smart00288 VHS Domain present in VPS-27, Hrs and STAM

Probab=85.59  E-value=16  Score=28.84  Aligned_cols=86  Identities=19%  Similarity=0.187  Sum_probs=57.3

Q ss_pred             HHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcChh----hhhhhhHHHHHHhcCCC--ChHHHHHHHHHHHHHHHHhCC
Q 009975          135 TDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ----DCVAHILPVIVNFSQDK--SWRVRYMVANQLYELCEAVGP  208 (521)
Q Consensus       135 ~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~----~~~~~l~~~l~~~~~d~--~~~vR~~~~~~l~~i~~~~~~  208 (521)
                      ...+..+.+-+++.++.+...|+.++..+.++.+..    .....++..+..++.++  .+.||..+...+...+..++.
T Consensus        36 k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f~~  115 (133)
T smart00288       36 KDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAFKN  115 (133)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHcC
Confidence            345556666667788888888888888888887653    23344566666666553  234899999988888888876


Q ss_pred             CccccchHHHHH
Q 009975          209 EPTRMDLVPAYV  220 (521)
Q Consensus       209 ~~~~~~l~~~l~  220 (521)
                      +.....+...+.
T Consensus       116 ~~~~~~i~~~y~  127 (133)
T smart00288      116 DPDLSQIVDVYD  127 (133)
T ss_pred             CCCchHHHHHHH
Confidence            544444444443

Unpublished observations. Domain of unknown function.

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=85.54  E-value=34  Score=32.62  Aligned_cols=109  Identities=8%  Similarity=0.080  Sum_probs=71.3

Q ss_pred             HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCH--HHHHhhhHHHHHhh-----hcCcchHHHHHHHHHHHHhhcccC
Q 009975          369 DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP--EWAMQHITPQVLEM-----INNPHYLYRMTILRAISLLAPVMG  441 (521)
Q Consensus       369 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~-----l~~~~~~~r~~a~~~l~~l~~~~~  441 (521)
                      +.++..+..++..++.+....+.-++|.++..-..  ....+.++..+.+.     --|.|-++..+++.++..+.--..
T Consensus       314 p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~  393 (604)
T KOG4500|consen  314 PQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVS  393 (604)
T ss_pred             cHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCC
Confidence            44777788899999999999999999998753321  22233444444443     346788889999999999874332


Q ss_pred             h-HHH-hhcHHHHHHhhcCCCCchHHHHHHHHHHHHHh
Q 009975          442 S-EIT-CSRLLPVVINASKDRVPNIKFNVAKVLQSLIP  477 (521)
Q Consensus       442 ~-~~~-~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~  477 (521)
                      . ..+ ..-+...++..++-..|.|...-..++.-+..
T Consensus       394 nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d  431 (604)
T KOG4500|consen  394 NKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRD  431 (604)
T ss_pred             chhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHh
Confidence            2 222 23345556666667777777776666665543

>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length

Probab=85.51  E-value=35  Score=32.67  Aligned_cols=71  Identities=14%  Similarity=0.193  Sum_probs=48.7

Q ss_pred             HhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchH------HHHhhHHHHHHHhcCCCCc----cHHHHHHHHHHHH
Q 009975          445 TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS------MVEKTIRPCLVELTEDPDV----DVRFFATQAIQSI  514 (521)
Q Consensus       445 ~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~------~~~~~~~~~l~~l~~D~~~----~vr~~a~~al~~l  514 (521)
                      +.+..+...-.+++++++.+|..|..+...+.-....+      ...-...|....+-.....    ++|..+...+..+
T Consensus       271 ~~n~wL~v~e~cFn~~d~~~k~~A~~aW~~liy~~~~~~~~~~k~l~lL~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~l  350 (372)
T PF12231_consen  271 HLNEWLKVPEKCFNSSDPQVKIQAFKAWRRLIYASNPNELTSPKRLKLLCQPLSSQLRREKSSKTKEEVWWYLLYSLCNL  350 (372)
T ss_pred             hHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHhCccccccccHHHHHHHHHHHhch
Confidence            45677888888999999999999999999987654322      2223446665555444444    6777777666654


Q ss_pred             H
Q 009975          515 D  515 (521)
Q Consensus       515 ~  515 (521)
                      -
T Consensus       351 l  351 (372)
T PF12231_consen  351 L  351 (372)
T ss_pred             H
Confidence            3

Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.

>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins

Probab=84.91  E-value=7.7  Score=27.82  Aligned_cols=68  Identities=15%  Similarity=0.125  Sum_probs=47.2

Q ss_pred             HhhcHHHHHHhh-cCCCCchHHHHHHHHHHHHHhhhchHHHH--hhHHHHHHHhcCCCCccHHHHHHHHHH
Q 009975          445 TCSRLLPVVINA-SKDRVPNIKFNVAKVLQSLIPIVDQSMVE--KTIRPCLVELTEDPDVDVRFFATQAIQ  512 (521)
Q Consensus       445 ~~~~il~~l~~~-l~d~~~~VR~~a~~~l~~~~~~~~~~~~~--~~~~~~l~~l~~D~~~~vr~~a~~al~  512 (521)
                      +...++..+... ...++..||...+.++..+....+..--.  ..++..+.....|.+.++-..|-.+++
T Consensus        14 fQ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~   84 (86)
T PF09324_consen   14 FQKDFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQ   84 (86)
T ss_pred             HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence            455555555554 45567889999999999988866543221  567777777788888888777776665

It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].

>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=84.61  E-value=57  Score=34.33  Aligned_cols=359  Identities=12%  Similarity=0.058  Sum_probs=178.4

Q ss_pred             HHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCCC-----hhHHHHHHHHHHHHhhhcChhhhhhhhHHHHHHhc---
Q 009975          113 VRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQ-----DSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFS---  184 (521)
Q Consensus       113 vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~-----~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~---  184 (521)
                      -|+.....+...-..++ +...+.+...+.++..+.+     ...-.+.+-.+..++++++....  .-+|-+.+.+   
T Consensus       440 YR~diSD~~~~~Y~ilg-d~ll~~L~~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t~~--~~i~rl~~~~asi  516 (982)
T KOG2022|consen  440 YRKDISDLLMSSYSILG-DGLLDFLIDTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGETES--TWIPRLFETSASI  516 (982)
T ss_pred             HHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCcchh--HHHHHHHHhcccc
Confidence            35555555555444444 4444555556666655443     34556677888888888766422  2233333322   


Q ss_pred             --CCCChHHHHHHHHHHHHHHHHhCCCcc-ccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHH--HHHHhhhHHHH
Q 009975          185 --QDKSWRVRYMVANQLYELCEAVGPEPT-RMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE--LAIQHILPCVK  259 (521)
Q Consensus       185 --~d~~~~vR~~~~~~l~~i~~~~~~~~~-~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~~~~l~  259 (521)
                        +-.++..-..+...+|..+..+++... .+..+|.+.+.+...+.++  .+...+.++++.+..+  .+...++....
T Consensus       517 k~S~~n~ql~~Tss~~igs~s~~l~e~P~~ln~sl~~L~~~Lh~sk~s~--q~i~tl~tlC~~C~~~L~py~d~~~a~~~  594 (982)
T KOG2022|consen  517 KLSAPNPQLLSTSSDLIGSLSNWLGEHPMYLNPSLPLLFQGLHNSKESE--QAISTLKTLCETCPESLDPYADQFSAVCY  594 (982)
T ss_pred             ccccCChhHHHHHHHHHHHHHHHHhcCCcccCchHHHHHHHhcCchHHH--HHHHHHHHHHHhhhhhCchHHHHHHHHHH
Confidence              124777888899999999988876543 3567888888887554443  3555577777765432  22233333333


Q ss_pred             Hhcc--CCcHHHHHHHHHHHHccccccChHHHHHhHHHH---HHHhh----cC--CChHHHHHHHH---HHHHhhhhh-c
Q 009975          260 ELSS--DSSQHVRSALASVIMGMAPLLGKDATIEQLLPI---FLSLL----KD--EFPDVRLNIIS---KLDQVNQVI-G  324 (521)
Q Consensus       260 ~~~~--d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~---l~~~l----~d--~~~~vr~~a~~---~l~~~~~~~-~  324 (521)
                      +.+.  ......|..+..++|.+......+...+++...   +..-+    ..  ++++-+...+-   ++..+...+ +
T Consensus       595 e~l~~~~~~~S~~~klm~sIGyvls~~~pEe~~kyl~~lin~il~qle~~l~~~i~~~e~~l~~~~~l~~iS~LftSL~~  674 (982)
T KOG2022|consen  595 EVLNKSNAKDSDRLKLMKSIGYVLSRLKPEEIPKYLMKLINPILSQLEINLAPGIDDQENHLRIAFQLNTISALFTSLIN  674 (982)
T ss_pred             HHhcccccCchHHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHhccCC
Confidence            3332  223457778888888887766544433333222   22211    11  12222222221   222222111 0


Q ss_pred             ---------------------hhhHhhhHHHHHHHHhc--CCChHHHHHHHHHhHHHHhhhChhhhH----HHHHHHHHH
Q 009975          325 ---------------------IDLLSQSLLPAIVELAE--DRHWRVRLAIIEYIPLLASQLGVGFFD----DKLGALCMQ  377 (521)
Q Consensus       325 ---------------------~~~~~~~~~~~l~~~~~--~~~~~vr~~~~~~l~~l~~~~~~~~~~----~~l~~~l~~  377 (521)
                                           .-.+...++|.+.....  -++..+-.+++.....-....+.+ |.    +.+.+.+..
T Consensus       675 ~~~~~d~d~~~~~~~~~qq~~il~v~~k~i~~~~kv~s~~~~~s~vve~~C~i~~~~v~~~~~s-F~~p~l~~l~~Fi~r  753 (982)
T KOG2022|consen  675 KKDIIDTDQPEQREEPFQQFPILQVLQKAIPVFEKVLSMWLGLSDVVEASCIIMVKGVRSLLTS-FPEPMLPSLCPFIVR  753 (982)
T ss_pred             CCccccccchhhhccccccCCHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhcccccccc-chhhhHHHHHHHHHH
Confidence                                 01133566666665443  122334444333332222333333 33    334444444


Q ss_pred             HcCCCcHHHHHHHHHHHHHHHHHhCHHHHH-----------hhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccC-----
Q 009975          378 WLQDKVYSIRDAAANNLKRLAEEFGPEWAM-----------QHITPQVLEMINNPHYLYRMTILRAISLLAPVMG-----  441 (521)
Q Consensus       378 ~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~-----------~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~-----  441 (521)
                      +...+....-.-...++-   ..++.+...           +..+-.+.+..-.+++..-.....++..+.+..+     
T Consensus       754 ~~~~~~a~tl~l~~~~l~---~~~~~~~~~~lv~~~~~~~~q~sl~lf~~~~f~n~~Di~~~~~~~v~~ilkk~P~~~~~  830 (982)
T KOG2022|consen  754 FLTSCLAVTLSLIAACLL---AKSTVEQCKPLVGQDMANAFQQSLLLFEQHPFSNQPDIYLQLIGFVRQILKKIPKFLEP  830 (982)
T ss_pred             hccchHHHHHHHHHHHHH---hhhccccccccHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHhCcCcccc
Confidence            333222111110000110   111111111           1111111111112345555666667777666433     


Q ss_pred             -hHHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhc
Q 009975          442 -SEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD  480 (521)
Q Consensus       442 -~~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~  480 (521)
                       ...|...+++..+.++..+.+.--.++++.+..+...-+
T Consensus       831 ~~~~~ts~i~~~a~~ll~~pE~~~i~aa~qF~t~~~~~~~  870 (982)
T KOG2022|consen  831 SMLAFTSLILICAFILLNSPEPTTIRAASQFLTALATYAT  870 (982)
T ss_pred             chHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHhhcc
Confidence             234567788888899999888777788888877765543

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=84.29  E-value=29  Score=30.76  Aligned_cols=90  Identities=13%  Similarity=0.100  Sum_probs=51.6

Q ss_pred             HHHHHHHHHHhhhcCh------hhhhhhhHHHHHHhcCC-CChHHHHHHHHHHHHHHHHhCCCc----cccchHHHHHHh
Q 009975          154 LLAVEGCAALGKLLEP------QDCVAHILPVIVNFSQD-KSWRVRYMVANQLYELCEAVGPEP----TRMDLVPAYVRL  222 (521)
Q Consensus       154 ~~a~~~l~~l~~~~~~------~~~~~~l~~~l~~~~~d-~~~~vR~~~~~~l~~i~~~~~~~~----~~~~l~~~l~~~  222 (521)
                      +.|...+..++.+-..      ....-++.|++....+. +...+|-.....+|.+.+.-.++.    ...+++|...+.
T Consensus        68 cnaLaLlQ~vAshpetr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~  147 (262)
T PF04078_consen   68 CNALALLQCVASHPETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRI  147 (262)
T ss_dssp             HHHHHHHHHHHH-TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHH
T ss_pred             HHHHHHHHHHHcChHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHH
Confidence            4556666666665221      12334578888766655 345688888877777775322222    135788888888


Q ss_pred             cCCChHHHHHHHHHhHHHHHh
Q 009975          223 LRDNEAEVRIAAAGKVTKFCR  243 (521)
Q Consensus       223 l~d~~~~vr~~a~~~l~~l~~  243 (521)
                      ++-++.--|..|...+..+..
T Consensus       148 me~GselSKtvAtfIlqKIL~  168 (262)
T PF04078_consen  148 MEFGSELSKTVATFILQKILL  168 (262)
T ss_dssp             HHHS-HHHHHHHHHHHHHHHH
T ss_pred             HHhccHHHHHHHHHHHHHHHc
Confidence            877766667777766666544

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins

Probab=84.16  E-value=11  Score=27.11  Aligned_cols=68  Identities=13%  Similarity=0.114  Sum_probs=49.7

Q ss_pred             HHHHHHHHHHHh-cCCCChHHHHHHHHhHHHHHHhhCc--hhhHHHHHHHHHHhhcCCChhHHHHHHHHHH
Q 009975           94 LKTELRSIYTQL-CQDDMPMVRRSAASNLGKFAATVEP--AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCA  161 (521)
Q Consensus        94 ~~~~l~~~l~~l-~~~~~~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~  161 (521)
                      ..+.++..+... ....+..||+....++..++...+.  ..-|+.++..+.....++++.+-..|.+++.
T Consensus        14 fQ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~   84 (86)
T PF09324_consen   14 FQKDFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQ   84 (86)
T ss_pred             HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence            355666666665 4556889999999999999876654  2347788888888888877777777766554

It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].

>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised

Probab=83.58  E-value=31  Score=30.54  Aligned_cols=49  Identities=12%  Similarity=0.217  Sum_probs=29.2

Q ss_pred             cHHHHHHhhcCCCC--chHHHHHHHHHHHHHhhhchHHHHhhHHHHHHHhcCC
Q 009975          448 RLLPVVINASKDRV--PNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTED  498 (521)
Q Consensus       448 ~il~~l~~~l~d~~--~~VR~~a~~~l~~~~~~~~~~~~~~~~~~~l~~l~~D  498 (521)
                      .++..++..+.++.  +.+=.+.+++|..++..  .+.+...+++.|..+..+
T Consensus       114 ~lL~~Ll~~l~~~~i~~~~~~a~insL~~Iak~--RP~~~~~Il~~ll~~~~~  164 (239)
T PF11935_consen  114 GLLDRLLDVLQSPHISSPLLTAIINSLSNIAKQ--RPQFMSRILPALLSFNPN  164 (239)
T ss_dssp             HHHHHHHHHHC-TT--HHHHHHHHHHHHHHHHH--SGGGHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHhhcccchHHHHHHHHHHHHHHHH--hhHHHHHHHHHHHhcCcc
Confidence            45556666665554  45555667777777663  233456778887776443

This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.

>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein

Probab=82.65  E-value=23  Score=28.30  Aligned_cols=87  Identities=13%  Similarity=0.101  Sum_probs=55.8

Q ss_pred             HHHHHHHHhhc-CCChhHHHHHHHHHHHHhhhcChh----hhhhhhHHH-HHHhcCC---CChHHHHHHHHHHHHHHHHh
Q 009975          136 DIMSIFEDLTQ-DDQDSVRLLAVEGCAALGKLLEPQ----DCVAHILPV-IVNFSQD---KSWRVRYMVANQLYELCEAV  206 (521)
Q Consensus       136 ~l~~~l~~l~~-d~~~~vr~~a~~~l~~l~~~~~~~----~~~~~l~~~-l~~~~~d---~~~~vR~~~~~~l~~i~~~~  206 (521)
                      +.+..+.+-++ +.++.+...|+.++..+.++.+..    .....++.- +.+++.+   .+..||..+.+.+...+..+
T Consensus        38 ~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~f  117 (141)
T cd03565          38 DAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADAF  117 (141)
T ss_pred             HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHHh
Confidence            33444444444 457778888888888888887753    233445554 5665543   34589999999999998888


Q ss_pred             CCCccccchHHHHHHh
Q 009975          207 GPEPTRMDLVPAYVRL  222 (521)
Q Consensus       207 ~~~~~~~~l~~~l~~~  222 (521)
                      +.+...+.+...+..+
T Consensus       118 ~~~~~l~~i~~~y~~L  133 (141)
T cd03565         118 RGSPDLTGVVEVYEEL  133 (141)
T ss_pred             CCCccchHHHHHHHHH
Confidence            7655444444444443

The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.

>PF14868 DUF4487: Domain of unknown function (DUF4487)

Probab=82.28  E-value=60  Score=32.83  Aligned_cols=54  Identities=20%  Similarity=0.306  Sum_probs=26.9

Q ss_pred             HHHHHHHHhHHHHhhhChhhhH----HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHH
Q 009975          347 VRLAIIEYIPLLASQLGVGFFD----DKLGALCMQWLQDKVYSIRDAAANNLKRLAEE  400 (521)
Q Consensus       347 vr~~~~~~l~~l~~~~~~~~~~----~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~  400 (521)
                      +|-++++.++.+++..-++...    +.+..++-.++.|.+|.++..|+++++.+++.
T Consensus       496 ~kl~~~~FLs~lg~~~i~~~~q~~~~~~Ls~Lf~~LL~d~~Wll~q~ALeAF~~FAe~  553 (559)
T PF14868_consen  496 VKLALLDFLSSLGKLFIPESDQNPVSPALSELFHMLLADRHWLLHQHALEAFGQFAER  553 (559)
T ss_pred             chHHHHHHHHHhccccCCccccchhhhHHHHHHHHHhcCCcHHHHHHHHHHHHHHhcc
Confidence            5555555555555444332222    22333334456666666666666666665543

>smart00567 EZ_HEAT E-Z type HEAT repeats

Probab=81.98  E-value=2.1  Score=23.26  Aligned_cols=15  Identities=20%  Similarity=0.133  Sum_probs=9.3

Q ss_pred             HHHHHHHHHHHHccc
Q 009975          267 QHVRSALASVIMGMA  281 (521)
Q Consensus       267 ~~vr~~~~~~l~~i~  281 (521)
                      |.||..++.+++.+.
T Consensus         1 ~~vR~~aa~aLg~~~   15 (30)
T smart00567        1 PLVRHEAAFALGQLG   15 (30)
T ss_pred             CHHHHHHHHHHHHcC
Confidence            346666776666663

Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.

>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []

Probab=81.70  E-value=11  Score=30.00  Aligned_cols=81  Identities=20%  Similarity=0.307  Sum_probs=47.4

Q ss_pred             cchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhhhHHHHHhccCCcHHHHHHHHHHHHcccc-ccChHHHHH
Q 009975          213 MDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAP-LLGKDATIE  291 (521)
Q Consensus       213 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~-~~~~~~~~~  291 (521)
                      +.+...+..++.+++.+|+..|++|+...-.     ......-..+..+++|..  .|.........-.. .+. +...+
T Consensus        16 ~~l~~~~~~LL~~~d~~vQklAL~cll~~k~-----~~l~pY~d~L~~Lldd~~--frdeL~~f~~~~~~~~I~-~ehR~   87 (141)
T PF07539_consen   16 DELYDALLRLLSSRDPEVQKLALDCLLTWKD-----PYLTPYKDNLENLLDDKT--FRDELTTFNLSDESSVIE-EEHRP   87 (141)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----HHHHhHHHHHHHHcCcch--HHHHHHhhcccCCcCCCC-HHHHh
Confidence            5678888899999999999999999877533     122233455667777664  34444322211110 011 22345


Q ss_pred             hHHHHHHHhh
Q 009975          292 QLLPIFLSLL  301 (521)
Q Consensus       292 ~l~~~l~~~l  301 (521)
                      .++|+++.++
T Consensus        88 ~l~pvvlRIL   97 (141)
T PF07539_consen   88 ELMPVVLRIL   97 (141)
T ss_pred             HHHHHHHHHH
Confidence            6666665554

It is believed to be involved in processing of non-coding RNA [].

>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain

Probab=81.68  E-value=16  Score=27.89  Aligned_cols=37  Identities=14%  Similarity=0.143  Sum_probs=27.3

Q ss_pred             hhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChHH
Q 009975          408 QHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI  444 (521)
Q Consensus       408 ~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~  444 (521)
                      ..++..|...+++++|++..-++..+..+.+.+|..+
T Consensus        36 ~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f   72 (115)
T cd00197          36 KEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERF   72 (115)
T ss_pred             HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHH
Confidence            4466667777777788888888888888887777654

The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=81.25  E-value=5.1  Score=38.92  Aligned_cols=109  Identities=9%  Similarity=0.103  Sum_probs=76.7

Q ss_pred             HHHHHHHHHHcCCCcHHHHHHHHHHHHHHH---HHhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChHH-
Q 009975          369 DKLGALCMQWLQDKVYSIRDAAANNLKRLA---EEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI-  444 (521)
Q Consensus       369 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~---~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~-  444 (521)
                      ..+...++..+++|+-.+...+...+-.++   ..+|..+....++..+.+++.+++..+|....+.+.++.-.+.... 
T Consensus       430 ~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmyncq~~ek  509 (743)
T COG5369         430 YPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYNCQKNEK  509 (743)
T ss_pred             cchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhcCcchhh
Confidence            457778888888876655544433333322   2345556678889999998888888888888998888775444331 


Q ss_pred             --HhhcH-HHHHHhhcCCCCchHHHHHHHHHHHHHh
Q 009975          445 --TCSRL-LPVVINASKDRVPNIKFNVAKVLQSLIP  477 (521)
Q Consensus       445 --~~~~i-l~~l~~~l~d~~~~VR~~a~~~l~~~~~  477 (521)
                        +...+ +..++...+|+.+.|....++.+..+.-
T Consensus       510 f~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc  545 (743)
T COG5369         510 FKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTC  545 (743)
T ss_pred             hhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhccc
Confidence              22222 5678889999999999999999988754

>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal

Probab=80.20  E-value=44  Score=30.02  Aligned_cols=128  Identities=16%  Similarity=0.161  Sum_probs=74.4

Q ss_pred             HHHHHHHhhcCCC----hHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChhhhH
Q 009975          293 LLPIFLSLLKDEF----PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD  368 (521)
Q Consensus       293 l~~~l~~~l~d~~----~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~  368 (521)
                      .+|.+...+.+++    ......++..+..+++.-|...    +-..+..+.+........-....+..+...+.++. .
T Consensus       112 ~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~~~~----La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~P~~-~  186 (262)
T PF14225_consen  112 LLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQGLPN----LARILSSYAKGRFRDKDDFLSQVVSYLREAFFPDH-E  186 (262)
T ss_pred             HHHHHHHHhcccccccccHHHHHHHHHHHHHHHhCCCcc----HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhCchh-H
Confidence            4666666666665    1334456677887776544333    23333334433332222222233344444443332 2


Q ss_pred             HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHH-HHHhhhHHHHHhhhcCcchHH
Q 009975          369 DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE-WAMQHITPQVLEMINNPHYLY  425 (521)
Q Consensus       369 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~-~~~~~l~~~l~~~l~~~~~~~  425 (521)
                      -.++-.+..++.+...++|..++..+..+....... ....+++..+.++++.+.|.-
T Consensus       187 ~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~~~~dlispllrlL~t~~~~e  244 (262)
T PF14225_consen  187 FQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSPHGADLISPLLRLLQTDLWME  244 (262)
T ss_pred             HHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCCcchHHHHHHHHHhCCccHHH
Confidence            345666788888999999999999999888655211 134457777777888777653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	521
3dw8_A	582	Structure Of A Protein Phosphatase 2a Holoenzyme Wi		1e-172
3dw8_A	582	Structure Of A Protein Phosphatase 2a Holoenzyme Wi		1e-09
2pkg_A	580	Structure Of A Complex Between The A Subunit Of Pro		1e-172
2pkg_A	580	Structure Of A Complex Between The A Subunit Of Pro		1e-09
1b3u_A	588	Crystal Structure Of Constant Regulatory Domain Of		1e-172
1b3u_A	588	Crystal Structure Of Constant Regulatory Domain Of		1e-09
2ie3_A	589	Structure Of The Protein Phosphatase 2a Core Enzyme		1e-172
2ie3_A	589	Structure Of The Protein Phosphatase 2a Core Enzyme		1e-09
3fga_A	588	Structural Basis Of Pp2a And Sgo Interaction Length		1e-172
3fga_A	588	Structural Basis Of Pp2a And Sgo Interaction Length		2e-05
2iae_A	589	Crystal Structure Of A Protein Phosphatase 2a (Pp2a		1e-172
2iae_A	589	Crystal Structure Of A Protein Phosphatase 2a (Pp2a		2e-05
2nyl_A	582	Crystal Structure Of Protein Phosphatase 2a (Pp2a)		1e-166
2nyl_A	582	Crystal Structure Of Protein Phosphatase 2a (Pp2a)		1e-09
3c5w_A	232	Complex Between Pp2a-Specific Methylesterase Pme-1		8e-64
1ibr_D	462	Complex Of Ran With Importin Beta Length = 462		4e-04
1m5n_S	485	Crystal Structure Of Heat Repeats (1-11) Of Importi		4e-04
2qna_A	762	Crystal Structure Of Human Importin-Beta (127-876)		6e-04
2p8q_A	876	Crystal Structure Of Human Importin Beta Bound To T		6e-04
1qgk_A	876	Structure Of Importin Beta Bound To The Ibb Domain		6e-04

>pdb|3DW8|A Chain A, Structure Of A Protein Phosphatase 2a Holoenzyme With B55 Subunit Length = 582

Iteration: 1
 Score =  601 bits (1550), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 296/515 (57%), Positives = 384/515 (74%), Gaps = 4/515 (0%)
Query: 1   MAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWY 60
           +AE+LG F   VGG E+ H LLPPLE+L TVEET VRDKAVESL  I  +   SDL   +
Sbjct: 62  LAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHF 121
Query: 61  IPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASN 120
           +PLVKRLA G+WFT+R SACGLF + YP     +K ELR  +  LC DD PMVRR+AAS 
Sbjct: 122 VPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASK 181
Query: 121 LGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVI 180
           LG+FA  +E  ++K++I+ +F +L  D+QDSVRLLAVE C  + +LL  +D  A ++P +
Sbjct: 182 LGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTL 241
Query: 181 VNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTK 240
              ++DKSWRVRYMVA++  EL +AVGPE T+ DLVPA+  L++D EAEVR AA+ KV +
Sbjct: 242 RQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKE 301
Query: 241 FCRILNPE----LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPI 296
           FC  L+ +    + +  ILPC+KEL SD++QHV+SALASVIMG++P+LGKD TIE LLP+
Sbjct: 302 FCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPL 361
Query: 297 FLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIP 356
           FL+ LKDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY+P
Sbjct: 362 FLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMP 421
Query: 357 LLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLE 416
           LLA QLGV FFD+KL +LCM WL D VY+IR+AA +NLK+L E+FG EWA   I P+VL 
Sbjct: 422 LLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLA 481
Query: 417 MINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLI 476
           M  +P+YL+RMT L  I++L+ V G +IT   +LP V+  + D V N++FNVAK LQ + 
Sbjct: 482 MSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIG 541
Query: 477 PIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAI 511
           PI+D S ++  ++P L +LT+D DVDV++FA +A+
Sbjct: 542 PILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEAL 576

>pdb|3DW8|A Chain A, Structure Of A Protein Phosphatase 2a Holoenzyme With B55 Subunit Length = 582

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 88/432 (20%), Positives = 159/432 (36%), Gaps = 47/432 (10%)
Query: 87  YPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQ 146
           YP A  +L  ELR+   QL        R ++   L   A  +     +++++    D T 
Sbjct: 4   YPIA--VLIDELRNEDVQL--------RLNSIKKLSTIALALGVERTRSELLPFLTD-TI 52
Query: 147 DDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAV 206
            D+D V L   E       L+   + V  +LP + + +  +   VR      L  +    
Sbjct: 53  YDEDEVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEH 112
Query: 207 GPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSS 266
            P       VP   RL   +    R +A G +   C           +    + L SD +
Sbjct: 113 SPSDLEAHFVPLVKRLAGGDWFTSRTSACG-LFSVCYPRVSSAVKAELRQYFRNLCSDDT 171
Query: 267 QHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID 326
             VR A AS +   A +L  D    +++P+F +L  DE   VRL  +     + Q++  +
Sbjct: 172 PMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE 231
Query: 327 LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSI 386
            L   ++P + + AED+ WRVR  + +    L   +G       L       ++D    +
Sbjct: 232 DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEV 291
Query: 387 RDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITC 446
           R AA++ +K   E    +                                       +  
Sbjct: 292 RAAASHKVKEFCENLSAD-----------------------------------CRENVIM 316
Query: 447 SRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFF 506
           S++LP +     D   ++K  +A V+  L PI+ +    + + P  +   +D   +VR  
Sbjct: 317 SQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLN 376
Query: 507 ATQAIQSIDHVM 518
               +  ++ V+
Sbjct: 377 IISNLDCVNEVI 388

>pdb|2PKG|A Chain A, Structure Of A Complex Between The A Subunit Of Protein Phosphatase 2a And The Small T Antigen Of Sv40 Length = 580

Iteration: 1
 Score =  601 bits (1550), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 296/515 (57%), Positives = 384/515 (74%), Gaps = 4/515 (0%)
Query: 1   MAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWY 60
           +AE+LG F   VGG E+ H LLPPLE+L TVEET VRDKAVESL  I  +   SDL   +
Sbjct: 60  LAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHF 119
Query: 61  IPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASN 120
           +PLVKRLA G+WFT+R SACGLF + YP     +K ELR  +  LC DD PMVRR+AAS 
Sbjct: 120 VPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASK 179
Query: 121 LGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVI 180
           LG+FA  +E  ++K++I+ +F +L  D+QDSVRLLAVE C  + +LL  +D  A ++P +
Sbjct: 180 LGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTL 239
Query: 181 VNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTK 240
              ++DKSWRVRYMVA++  EL +AVGPE T+ DLVPA+  L++D EAEVR AA+ KV +
Sbjct: 240 RQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKE 299
Query: 241 FCRILNPE----LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPI 296
           FC  L+ +    + +  ILPC+KEL SD++QHV+SALASVIMG++P+LGKD TIE LLP+
Sbjct: 300 FCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPL 359
Query: 297 FLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIP 356
           FL+ LKDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY+P
Sbjct: 360 FLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMP 419
Query: 357 LLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLE 416
           LLA QLGV FFD+KL +LCM WL D VY+IR+AA +NLK+L E+FG EWA   I P+VL 
Sbjct: 420 LLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLA 479
Query: 417 MINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLI 476
           M  +P+YL+RMT L  I++L+ V G +IT   +LP V+  + D V N++FNVAK LQ + 
Sbjct: 480 MSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIG 539
Query: 477 PIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAI 511
           PI+D S ++  ++P L +LT+D DVDV++FA +A+
Sbjct: 540 PILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEAL 574

>pdb|2PKG|A Chain A, Structure Of A Complex Between The A Subunit Of Protein Phosphatase 2a And The Small T Antigen Of Sv40 Length = 580

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 88/432 (20%), Positives = 159/432 (36%), Gaps = 47/432 (10%)
Query: 87  YPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQ 146
           YP A  +L  ELR+   QL        R ++   L   A  +     +++++    D T 
Sbjct: 2   YPIA--VLIDELRNEDVQL--------RLNSIKKLSTIALALGVERTRSELLPFLTD-TI 50
Query: 147 DDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAV 206
            D+D V L   E       L+   + V  +LP + + +  +   VR      L  +    
Sbjct: 51  YDEDEVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEH 110
Query: 207 GPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSS 266
            P       VP   RL   +    R +A G +   C           +    + L SD +
Sbjct: 111 SPSDLEAHFVPLVKRLAGGDWFTSRTSACG-LFSVCYPRVSSAVKAELRQYFRNLCSDDT 169
Query: 267 QHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID 326
             VR A AS +   A +L  D    +++P+F +L  DE   VRL  +     + Q++  +
Sbjct: 170 PMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE 229
Query: 327 LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSI 386
            L   ++P + + AED+ WRVR  + +    L   +G       L       ++D    +
Sbjct: 230 DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEV 289
Query: 387 RDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITC 446
           R AA++ +K   E    +                                       +  
Sbjct: 290 RAAASHKVKEFCENLSAD-----------------------------------CRENVIM 314
Query: 447 SRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFF 506
           S++LP +     D   ++K  +A V+  L PI+ +    + + P  +   +D   +VR  
Sbjct: 315 SQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLN 374
Query: 507 ATQAIQSIDHVM 518
               +  ++ V+
Sbjct: 375 IISNLDCVNEVI 386

>pdb|1B3U|A Chain A, Crystal Structure Of Constant Regulatory Domain Of Human Pp2a, Pr65alpha Length = 588

Iteration: 1
 Score =  601 bits (1550), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 296/515 (57%), Positives = 384/515 (74%), Gaps = 4/515 (0%)
Query: 1   MAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWY 60
           +AE+LG F   VGG E+ H LLPPLE+L TVEET VRDKAVESL  I  +   SDL   +
Sbjct: 68  LAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHF 127
Query: 61  IPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASN 120
           +PLVKRLA G+WFT+R SACGLF + YP     +K ELR  +  LC DD PMVRR+AAS 
Sbjct: 128 VPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASK 187
Query: 121 LGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVI 180
           LG+FA  +E  ++K++I+ +F +L  D+QDSVRLLAVE C  + +LL  +D  A ++P +
Sbjct: 188 LGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTL 247
Query: 181 VNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTK 240
              ++DKSWRVRYMVA++  EL +AVGPE T+ DLVPA+  L++D EAEVR AA+ KV +
Sbjct: 248 RQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKE 307
Query: 241 FCRILNPE----LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPI 296
           FC  L+ +    + +  ILPC+KEL SD++QHV+SALASVIMG++P+LGKD TIE LLP+
Sbjct: 308 FCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPL 367
Query: 297 FLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIP 356
           FL+ LKDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY+P
Sbjct: 368 FLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMP 427
Query: 357 LLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLE 416
           LLA QLGV FFD+KL +LCM WL D VY+IR+AA +NLK+L E+FG EWA   I P+VL 
Sbjct: 428 LLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLA 487
Query: 417 MINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLI 476
           M  +P+YL+RMT L  I++L+ V G +IT   +LP V+  + D V N++FNVAK LQ + 
Sbjct: 488 MSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIG 547
Query: 477 PIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAI 511
           PI+D S ++  ++P L +LT+D DVDV++FA +A+
Sbjct: 548 PILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEAL 582

>pdb|1B3U|A Chain A, Crystal Structure Of Constant Regulatory Domain Of Human Pp2a, Pr65alpha Length = 588

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 88/432 (20%), Positives = 159/432 (36%), Gaps = 47/432 (10%)
Query: 87  YPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQ 146
           YP A  +L  ELR+   QL        R ++   L   A  +     +++++    D T 
Sbjct: 10  YPIA--VLIDELRNEDVQL--------RLNSIKKLSTIALALGVERTRSELLPFLTD-TI 58
Query: 147 DDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAV 206
            D+D V L   E       L+   + V  +LP + + +  +   VR      L  +    
Sbjct: 59  YDEDEVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEH 118
Query: 207 GPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSS 266
            P       VP   RL   +    R +A G +   C           +    + L SD +
Sbjct: 119 SPSDLEAHFVPLVKRLAGGDWFTSRTSACG-LFSVCYPRVSSAVKAELRQYFRNLCSDDT 177
Query: 267 QHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID 326
             VR A AS +   A +L  D    +++P+F +L  DE   VRL  +     + Q++  +
Sbjct: 178 PMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE 237
Query: 327 LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSI 386
            L   ++P + + AED+ WRVR  + +    L   +G       L       ++D    +
Sbjct: 238 DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEV 297
Query: 387 RDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITC 446
           R AA++ +K   E    +                                       +  
Sbjct: 298 RAAASHKVKEFCENLSAD-----------------------------------CRENVIM 322
Query: 447 SRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFF 506
           S++LP +     D   ++K  +A V+  L PI+ +    + + P  +   +D   +VR  
Sbjct: 323 SQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLN 382
Query: 507 ATQAIQSIDHVM 518
               +  ++ V+
Sbjct: 383 IISNLDCVNEVI 394

>pdb|2IE3|A Chain A, Structure Of The Protein Phosphatase 2a Core Enzyme Bound To Tumor- Inducing Toxins Length = 589

Iteration: 1
 Score =  601 bits (1550), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 296/515 (57%), Positives = 384/515 (74%), Gaps = 4/515 (0%)
Query: 1   MAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWY 60
           +AE+LG F   VGG E+ H LLPPLE+L TVEET VRDKAVESL  I  +   SDL   +
Sbjct: 69  LAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHF 128
Query: 61  IPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASN 120
           +PLVKRLA G+WFT+R SACGLF + YP     +K ELR  +  LC DD PMVRR+AAS 
Sbjct: 129 VPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASK 188
Query: 121 LGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVI 180
           LG+FA  +E  ++K++I+ +F +L  D+QDSVRLLAVE C  + +LL  +D  A ++P +
Sbjct: 189 LGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTL 248
Query: 181 VNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTK 240
              ++DKSWRVRYMVA++  EL +AVGPE T+ DLVPA+  L++D EAEVR AA+ KV +
Sbjct: 249 RQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKE 308
Query: 241 FCRILNPE----LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPI 296
           FC  L+ +    + +  ILPC+KEL SD++QHV+SALASVIMG++P+LGKD TIE LLP+
Sbjct: 309 FCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPL 368
Query: 297 FLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIP 356
           FL+ LKDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY+P
Sbjct: 369 FLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMP 428
Query: 357 LLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLE 416
           LLA QLGV FFD+KL +LCM WL D VY+IR+AA +NLK+L E+FG EWA   I P+VL 
Sbjct: 429 LLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLA 488
Query: 417 MINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLI 476
           M  +P+YL+RMT L  I++L+ V G +IT   +LP V+  + D V N++FNVAK LQ + 
Sbjct: 489 MSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIG 548
Query: 477 PIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAI 511
           PI+D S ++  ++P L +LT+D DVDV++FA +A+
Sbjct: 549 PILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEAL 583

>pdb|2IE3|A Chain A, Structure Of The Protein Phosphatase 2a Core Enzyme Bound To Tumor- Inducing Toxins Length = 589

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 88/432 (20%), Positives = 159/432 (36%), Gaps = 47/432 (10%)
Query: 87  YPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQ 146
           YP A  +L  ELR+   QL        R ++   L   A  +     +++++    D T 
Sbjct: 11  YPIA--VLIDELRNEDVQL--------RLNSIKKLSTIALALGVERTRSELLPFLTD-TI 59
Query: 147 DDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAV 206
            D+D V L   E       L+   + V  +LP + + +  +   VR      L  +    
Sbjct: 60  YDEDEVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEH 119
Query: 207 GPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSS 266
            P       VP   RL   +    R +A G +   C           +    + L SD +
Sbjct: 120 SPSDLEAHFVPLVKRLAGGDWFTSRTSACG-LFSVCYPRVSSAVKAELRQYFRNLCSDDT 178
Query: 267 QHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID 326
             VR A AS +   A +L  D    +++P+F +L  DE   VRL  +     + Q++  +
Sbjct: 179 PMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE 238
Query: 327 LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSI 386
            L   ++P + + AED+ WRVR  + +    L   +G       L       ++D    +
Sbjct: 239 DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEV 298
Query: 387 RDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITC 446
           R AA++ +K   E    +                                       +  
Sbjct: 299 RAAASHKVKEFCENLSAD-----------------------------------CRENVIM 323
Query: 447 SRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFF 506
           S++LP +     D   ++K  +A V+  L PI+ +    + + P  +   +D   +VR  
Sbjct: 324 SQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLN 383
Query: 507 ATQAIQSIDHVM 518
               +  ++ V+
Sbjct: 384 IISNLDCVNEVI 395

>pdb|3FGA|A Chain A, Structural Basis Of Pp2a And Sgo Interaction Length = 588

Iteration: 1
 Score =  601 bits (1550), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 296/515 (57%), Positives = 384/515 (74%), Gaps = 4/515 (0%)
Query: 1   MAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWY 60
           +AE+LG F   VGG E+ H LLPPLE+L TVEET VRDKAVESL  I  +   SDL   +
Sbjct: 68  LAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHF 127
Query: 61  IPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASN 120
           +PLVKRLA G+WFT+R SACGLF + YP     +K ELR  +  LC DD PMVRR+AAS 
Sbjct: 128 VPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASK 187
Query: 121 LGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVI 180
           LG+FA  +E  ++K++I+ +F +L  D+QDSVRLLAVE C  + +LL  +D  A ++P +
Sbjct: 188 LGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTL 247
Query: 181 VNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTK 240
              ++DKSWRVRYMVA++  EL +AVGPE T+ DLVPA+  L++D EAEVR AA+ KV +
Sbjct: 248 RQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKE 307
Query: 241 FCRILNPE----LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPI 296
           FC  L+ +    + +  ILPC+KEL SD++QHV+SALASVIMG++P+LGKD TIE LLP+
Sbjct: 308 FCENLSADCRENVIMTQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPL 367
Query: 297 FLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIP 356
           FL+ LKDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY+P
Sbjct: 368 FLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMP 427
Query: 357 LLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLE 416
           LLA QLGV FFD+KL +LCM WL D VY+IR+AA +NLK+L E+FG EWA   I P+VL 
Sbjct: 428 LLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLA 487
Query: 417 MINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLI 476
           M  +P+YL+RMT L  I++L+ V G +IT   +LP V+  + D V N++FNVAK LQ + 
Sbjct: 488 MSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIG 547
Query: 477 PIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAI 511
           PI+D S ++  ++P L +LT+D DVDV++FA +A+
Sbjct: 548 PILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEAL 582

>pdb|3FGA|A Chain A, Structural Basis Of Pp2a And Sgo Interaction Length = 588

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/225 (21%), Positives = 88/225 (39%), Gaps = 2/225 (0%)
Query: 294 LPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIE 353
           + + +  L++E   +RLN I KL  +   +G++     LLP + +   D    V LA+ E
Sbjct: 12  IAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDED-EVLLALAE 70
Query: 354 YIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQ 413
            +    + +G   +   L          +   +RD A  +L+ ++ E  P     H  P 
Sbjct: 71  QLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPL 130
Query: 414 VLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQ 473
           V  +     +  R +     S+  P + S +  + L     N   D  P ++   A  L 
Sbjct: 131 VKRLAGGDWFTSRTSACGLFSVCYPRVSSAVK-AELRQYFRNLCSDDTPMVRRAAASKLG 189
Query: 474 SLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVM 518
               +++   V+  I P    L  D    VR  A +A  +I  ++
Sbjct: 190 EFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLL 234

>pdb|2IAE|A Chain A, Crystal Structure Of A Protein Phosphatase 2a (Pp2a) Holoenzyme. Length = 589

Iteration: 1
 Score =  601 bits (1550), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 296/515 (57%), Positives = 384/515 (74%), Gaps = 4/515 (0%)
Query: 1   MAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWY 60
           +AE+LG F   VGG E+ H LLPPLE+L TVEET VRDKAVESL  I  +   SDL   +
Sbjct: 69  LAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHF 128
Query: 61  IPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASN 120
           +PLVKRLA G+WFT+R SACGLF + YP     +K ELR  +  LC DD PMVRR+AAS 
Sbjct: 129 VPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASK 188
Query: 121 LGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVI 180
           LG+FA  +E  ++K++I+ +F +L  D+QDSVRLLAVE C  + +LL  +D  A ++P +
Sbjct: 189 LGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTL 248
Query: 181 VNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTK 240
              ++DKSWRVRYMVA++  EL +AVGPE T+ DLVPA+  L++D EAEVR AA+ KV +
Sbjct: 249 RQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKE 308
Query: 241 FCRILNPE----LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPI 296
           FC  L+ +    + +  ILPC+KEL SD++QHV+SALASVIMG++P+LGKD TIE LLP+
Sbjct: 309 FCENLSADCRENVIMTQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPL 368
Query: 297 FLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIP 356
           FL+ LKDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY+P
Sbjct: 369 FLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMP 428
Query: 357 LLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLE 416
           LLA QLGV FFD+KL +LCM WL D VY+IR+AA +NLK+L E+FG EWA   I P+VL 
Sbjct: 429 LLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLA 488
Query: 417 MINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLI 476
           M  +P+YL+RMT L  I++L+ V G +IT   +LP V+  + D V N++FNVAK LQ + 
Sbjct: 489 MSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIG 548
Query: 477 PIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAI 511
           PI+D S ++  ++P L +LT+D DVDV++FA +A+
Sbjct: 549 PILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEAL 583

>pdb|2IAE|A Chain A, Crystal Structure Of A Protein Phosphatase 2a (Pp2a) Holoenzyme. Length = 589

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/225 (21%), Positives = 88/225 (39%), Gaps = 2/225 (0%)
Query: 294 LPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIE 353
           + + +  L++E   +RLN I KL  +   +G++     LLP + +   D    V LA+ E
Sbjct: 13  IAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDED-EVLLALAE 71
Query: 354 YIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQ 413
            +    + +G   +   L          +   +RD A  +L+ ++ E  P     H  P 
Sbjct: 72  QLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPL 131
Query: 414 VLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQ 473
           V  +     +  R +     S+  P + S +  + L     N   D  P ++   A  L 
Sbjct: 132 VKRLAGGDWFTSRTSACGLFSVCYPRVSSAVK-AELRQYFRNLCSDDTPMVRRAAASKLG 190
Query: 474 SLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVM 518
               +++   V+  I P    L  D    VR  A +A  +I  ++
Sbjct: 191 EFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLL 235

>pdb|2NYL|A Chain A, Crystal Structure Of Protein Phosphatase 2a (Pp2a) Holoenzyme With The Catalytic Subunit Carboxyl Terminus Truncated Length = 582

Iteration: 1
 Score =  581 bits (1497), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 290/515 (56%), Positives = 372/515 (72%), Gaps = 4/515 (0%)
Query: 1   MAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWY 60
           +AE+LG F   VGG E+ H LLPPLE+L TVEET VRDKAVESL  I  +   SDL   +
Sbjct: 62  LAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHF 121
Query: 61  IPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASN 120
           +PLVKRLA G+WFT+R SACGLF + YP     +K ELR  +  LC DD P VRR+AAS 
Sbjct: 122 VPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPXVRRAAASK 181
Query: 121 LGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVI 180
           LG+FA  +E  ++K++I+  F +L  D+QDSVRLLAVE C  + +LL  +D  A + P +
Sbjct: 182 LGEFAKVLELDNVKSEIIPXFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVXPTL 241
Query: 181 VNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTK 240
              ++DKSWRVRY VA++  EL +AVGPE T+ DLVPA+  L +D EAEVR AA+ KV +
Sbjct: 242 RQAAEDKSWRVRYXVADKFTELQKAVGPEITKTDLVPAFQNLXKDCEAEVRAAASHKVKE 301
Query: 241 FCRILNPE----LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPI 296
           FC  L+ +    +    ILPC+KEL SD++QHV+SALASVI G++P+LGKD TIE LLP+
Sbjct: 302 FCENLSADCRENVIXSQILPCIKELVSDANQHVKSALASVIXGLSPILGKDNTIEHLLPL 361
Query: 297 FLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIP 356
           FL+ LKDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY P
Sbjct: 362 FLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYXP 421
Query: 357 LLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLE 416
           LLA QLGV FFD+KL +LC  WL D VY+IR+AA +NLK+L E+FG EWA   I P+VL 
Sbjct: 422 LLAGQLGVEFFDEKLNSLCXAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLA 481
Query: 417 MINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLI 476
              +P+YL+R T L  I++L+ V G +IT    LP V+  + D V N++FNVAK LQ + 
Sbjct: 482 XSGDPNYLHRXTTLFCINVLSEVCGQDITTKHXLPTVLRXAGDPVANVRFNVAKSLQKIG 541
Query: 477 PIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAI 511
           PI+D S ++  ++P L +LT+D DVDV++FA +A+
Sbjct: 542 PILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEAL 576

>pdb|2NYL|A Chain A, Crystal Structure Of Protein Phosphatase 2a (Pp2a) Holoenzyme With The Catalytic Subunit Carboxyl Terminus Truncated Length = 582

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 77/385 (20%), Positives = 150/385 (38%), Gaps = 6/385 (1%)
Query: 138 MSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVAN 197
           +++  D  +++   +RL +++  + +   L  +   + +LP + +   D+   V   +A 
Sbjct: 6   IAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDED-EVLLALAE 64
Query: 198 QLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPC 257
           QL      VG       L+P    L    E  VR  A   +       +P     H +P 
Sbjct: 65  QLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPL 124
Query: 258 VKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLD 317
           VK L+       R++   +     P +   A   +L   F +L  D+ P VR    SKL 
Sbjct: 125 VKRLAGGDWFTSRTSACGLFSVCYPRVSS-AVKAELRQYFRNLCSDDTPXVRRAAASKLG 183
Query: 318 QVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQ 377
           +  +V+ +D +   ++P    LA D    VRL  +E    +A  L     +  +     Q
Sbjct: 184 EFAKVLELDNVKSEIIPXFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVXPTLRQ 243
Query: 378 WLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLA 437
             +DK + +R   A+    L +  GPE     + P    +  +     R      +    
Sbjct: 244 AAEDKSWRVRYXVADKFTELQKAVGPEITKTDLVPAFQNLXKDCEAEVRAAASHKVKEFC 303
Query: 438 PVMGSE----ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLV 493
             + ++    +  S++LP +     D   ++K  +A V+  L PI+ +    + + P  +
Sbjct: 304 ENLSADCRENVIXSQILPCIKELVSDANQHVKSALASVIXGLSPILGKDNTIEHLLPLFL 363
Query: 494 ELTEDPDVDVRFFATQAIQSIDHVM 518
              +D   +VR      +  ++ V+
Sbjct: 364 AQLKDECPEVRLNIISNLDCVNEVI 388

>pdb|3C5W|A Chain A, Complex Between Pp2a-Specific Methylesterase Pme-1 And Pp2a Core Enzyme Length = 232

Iteration: 1
 Score =  241 bits (615), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 116/218 (53%), Positives = 159/218 (72%)
Query: 294 LPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIE 353
           + + +  L++E   +RLN I KL  +   +G++ LSQSLLPAIVELAED  WRVRLAIIE
Sbjct: 9   IAVLIDELRNEDVQLRLNSIKKLSTIALALGVERLSQSLLPAIVELAEDAKWRVRLAIIE 68
Query: 354 YIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQ 413
           Y+PLLA QLGV FFD+KL +LCM WL D VY+IR+AA +NLK+L E+FG EWA   I P+
Sbjct: 69  YMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPK 128
Query: 414 VLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQ 473
           VL M  +P+YL+RMT L  I++L+ V G +IT   +LP V+  + D V N++FNVAK LQ
Sbjct: 129 VLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQ 188
Query: 474 SLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAI 511
            + PI+D S ++  ++P L +LT+D DVDV++FA +A+
Sbjct: 189 KIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEAL 226

>pdb|1IBR|D Chain D, Complex Of Ran With Importin Beta Length = 462

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 76/180 (42%), Gaps = 20/180 (11%)
Query: 92  DILKTELRSI--YTQLCQDDMPM-VRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQ-- 146
           DI +  L+ I  ++ +C ++M + +  S A+  G+        + K  +  +   LTQ  
Sbjct: 271 DIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTL 330
Query: 147 -DDQDSVRLLAVEGCAALGKLLE------PQDCVAHILPVIVNFSQDKSWRVRYMVANQL 199
               ++        C A G  L         D V H+LP I    ++  W  RY  A  +
Sbjct: 331 TKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDW--RYRDAAVM 388
Query: 200 YELCEAVGPEPTRM-----DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHI 254
              C   GPEP+++       +P  + L++D    VR  AA  V + C +L PE AI  +
Sbjct: 389 AFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELL-PEAAINDV 447

>pdb|1M5N|S Chain S, Crystal Structure Of Heat Repeats (1-11) Of Importin B Bound To The Non-Classical Nls(67-94) Of Pthrp Length = 485

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 76/180 (42%), Gaps = 20/180 (11%)
Query: 92  DILKTELRSI--YTQLCQDDMPM-VRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQ-- 146
           DI +  L+ I  ++ +C ++M + +  S A+  G+        + K  +  +   LTQ  
Sbjct: 271 DIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTL 330
Query: 147 -DDQDSVRLLAVEGCAALGKLLE------PQDCVAHILPVIVNFSQDKSWRVRYMVANQL 199
               ++        C A G  L         D V H+LP I    ++  W  RY  A  +
Sbjct: 331 TKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDW--RYRDAAVM 388
Query: 200 YELCEAVGPEPTRM-----DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHI 254
              C   GPEP+++       +P  + L++D    VR  AA  V + C +L PE AI  +
Sbjct: 389 AFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELL-PEAAINDV 447

>pdb|2QNA|A Chain A, Crystal Structure Of Human Importin-Beta (127-876) In Complex With The Ibb-Domain Of Snurportin1 (1-65) Length = 762

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 8/89 (8%)
Query: 171 DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRM-----DLVPAYVRLLRD 225
           D V H+LP I    ++  W  RY  A  +   C   GPEP+++       +P  + L++D
Sbjct: 237 DIVPHVLPFIKEHIKNPDW--RYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKD 294
Query: 226 NEAEVRIAAAGKVTKFCRILNPELAIQHI 254
               VR  AA  V + C +L PE AI  +
Sbjct: 295 PSVVVRDTAAWTVGRICELL-PEAAINDV 322

>pdb|2P8Q|A Chain A, Crystal Structure Of Human Importin Beta Bound To The Snurportin1 Ibb- Domain Length = 876

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 8/89 (8%)
Query: 171 DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRM-----DLVPAYVRLLRD 225
           D V H+LP I    ++  W  RY  A  +   C   GPEP+++       +P  + L++D
Sbjct: 362 DIVPHVLPFIKEHIKNPDW--RYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKD 419
Query: 226 NEAEVRIAAAGKVTKFCRILNPELAIQHI 254
               VR  AA  V + C +L PE AI  +
Sbjct: 420 PSVVVRDTAAWTVGRICELL-PEAAINDV 447

>pdb|1QGK|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of Importin Alpha Length = 876

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 8/89 (8%)
Query: 171 DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRM-----DLVPAYVRLLRD 225
           D V H+LP I    ++  W  RY  A  +   C   GPEP+++       +P  + L++D
Sbjct: 362 DIVPHVLPFIKEHIKNPDW--RYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKD 419
Query: 226 NEAEVRIAAAGKVTKFCRILNPELAIQHI 254
               VR  AA  V + C +L PE AI  +
Sbjct: 420 PSVVVRDTAAWTVGRICELL-PEAAINDV 447

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	521
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	1e-171
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	1e-69
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	9e-65
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	3e-52
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	1e-13
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	1e-19
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	5e-17
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	8e-08
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	5e-18
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	9e-18
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	2e-08
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	7e-18
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	3e-12
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	2e-11
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	1e-10
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	3e-08
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	2e-05
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	1e-04
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	6e-16
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	4e-12
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	1e-11
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	3e-08
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	4e-08
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	1e-13
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	3e-11
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	3e-11
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	7e-09
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	1e-08
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	3e-13
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	2e-06
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	4e-05
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	1e-11
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	2e-11
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	8e-11
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	7e-10
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	1e-08
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	9e-08
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	2e-07
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	3e-04
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	7e-11
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	7e-11
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	7e-11
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	4e-10
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	3e-09
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	9e-08
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	6e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-09
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	5e-09
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	2e-07
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	3e-07
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	4e-06
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	4e-04
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	1e-06
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	7e-06
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	8e-05
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	5e-04
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	2e-06
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	1e-05
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	1e-05
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	2e-04
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	2e-05
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	2e-05
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	6e-05
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	6e-04
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	4e-05
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	1e-04
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	2e-04
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	8e-04
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	3e-04
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	4e-04
1qgr_A	876	Protein (importin beta subunit); transport recepto	7e-04

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score =  494 bits (1272), Expect = e-171
 Identities = 296/518 (57%), Positives = 384/518 (74%), Gaps = 4/518 (0%)

Query: 1   MAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWY 60
           +AE+LG F   VGG E+ H LLPPLE+L TVEET VRDKAVESL  I  +   SDL   +
Sbjct: 68  LAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHF 127

Query: 61  IPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASN 120
           +PLVKRLA G+WFT+R SACGLF + YP     +K ELR  +  LC DD PMVRR+AAS 
Sbjct: 128 VPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASK 187

Query: 121 LGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVI 180
           LG+FA  +E  ++K++I+ +F +L  D+QDSVRLLAVE C  + +LL  +D  A ++P +
Sbjct: 188 LGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTL 247

Query: 181 VNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTK 240
              ++DKSWRVRYMVA++  EL +AVGPE T+ DLVPA+  L++D EAEVR AA+ KV +
Sbjct: 248 RQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKE 307

Query: 241 FCRILNPELA----IQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPI 296
           FC  L+ +      +  ILPC+KEL SD++QHV+SALASVIMG++P+LGKD TIE LLP+
Sbjct: 308 FCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPL 367

Query: 297 FLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIP 356
           FL+ LKDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY+P
Sbjct: 368 FLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMP 427

Query: 357 LLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLE 416
           LLA QLGV FFD+KL +LCM WL D VY+IR+AA +NLK+L E+FG EWA   I P+VL 
Sbjct: 428 LLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLA 487

Query: 417 MINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLI 476
           M  +P+YL+RMT L  I++L+ V G +IT   +LP V+  + D V N++FNVAK LQ + 
Sbjct: 488 MSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIG 547

Query: 477 PIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSI 514
           PI+D S ++  ++P L +LT+D DVDV++FA +A+  +
Sbjct: 548 PILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALTVL 585

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score =  232 bits (594), Expect = 1e-69
 Identities = 102/504 (20%), Positives = 192/504 (38%), Gaps = 8/504 (1%)

Query: 22  LPPLETLCTV---EETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVS 78
           L P+  L      E+  +R  +++ L  I   +         +P +      E       
Sbjct: 9   LYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLLAL 68

Query: 79  ACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIM 138
           A  L               L      L   +  +VR  A  +L   +    P+ L+   +
Sbjct: 69  AEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFV 128

Query: 139 SIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQ 198
            + + L   D  + R  A    +     +      A +     N   D +  VR   A++
Sbjct: 129 PLVKRLAGGDWFTSRTSACGLFSVCYPRVSSA-VKAELRQYFRNLCSDDTPMVRRAAASK 187

Query: 199 LYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCV 258
           L E  + +  +  + +++P +  L  D +  VR+ A        ++L  E     ++P +
Sbjct: 188 LGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTL 247

Query: 259 KELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQ 318
           ++ + D S  VR  +A     +   +G + T   L+P F +L+KD   +VR     K+ +
Sbjct: 248 RQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKE 307

Query: 319 VNQVIGIDLLS----QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGAL 374
             + +  D         +LP I EL  D +  V+ A+   I  L+  LG     + L  L
Sbjct: 308 FCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPL 367

Query: 375 CMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAIS 434
            +  L+D+   +R    +NL  + E  G     Q + P ++E+  +  +  R+ I+  + 
Sbjct: 368 FLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMP 427

Query: 435 LLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVE 494
           LLA  +G E    +L  + +    D V  I+      L+ L+    +     TI P ++ 
Sbjct: 428 LLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLA 487

Query: 495 LTEDPDVDVRFFATQAIQSIDHVM 518
           ++ DP+   R      I  +  V 
Sbjct: 488 MSGDPNYLHRMTTLFCINVLSEVC 511

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score =  219 bits (560), Expect = 9e-65
 Identities = 86/422 (20%), Positives = 173/422 (40%), Gaps = 5/422 (1%)

Query: 21  LLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSAC 80
           L      LC+ +   VR  A   L      +   ++    IP+   LA+ E  + R+ A 
Sbjct: 165 LRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAV 224

Query: 81  G-LFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMS 139
               +IA     + L+  +     Q  +D    VR   A    +    V P   KTD++ 
Sbjct: 225 EACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVP 284

Query: 140 IFEDLTQDDQDSVRLLAVEG----CAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMV 195
            F++L +D +  VR  A       C  L         ++ ILP I     D +  V+  +
Sbjct: 285 AFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSAL 344

Query: 196 ANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHIL 255
           A+ +  L   +G + T   L+P ++  L+D   EVR+     +     ++      Q +L
Sbjct: 345 ASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLL 404

Query: 256 PCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISK 315
           P + EL+ D+   VR A+   +  +A  LG +   E+L  + ++ L D    +R    S 
Sbjct: 405 PAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSN 464

Query: 316 LDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALC 375
           L ++ +  G +    +++P ++ ++ D ++  R+  +  I +L+   G       +    
Sbjct: 465 LKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTV 524

Query: 376 MQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISL 435
           ++   D V ++R   A +L+++            + P + ++  +     +     A+++
Sbjct: 525 LRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALTV 584

Query: 436 LA 437
           L+
Sbjct: 585 LS 586

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score =  185 bits (472), Expect = 3e-52
 Identities = 65/363 (17%), Positives = 138/363 (38%), Gaps = 5/363 (1%)

Query: 2   AEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYI 61
            E        +   +   +++P L      +   VR    +    +   +         +
Sbjct: 224 VEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLV 283

Query: 62  PLVKRLA---AGEWFTARVSACG--LFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRS 116
           P  + L      E   A          +++     +++ +++     +L  D    V+ +
Sbjct: 284 PAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSA 343

Query: 117 AASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHI 176
            AS +   +  +   +    ++ +F    +D+   VRL  +     + +++  +     +
Sbjct: 344 LASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSL 403

Query: 177 LPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAG 236
           LP IV  ++D  WRVR  +   +  L   +G E     L    +  L D+   +R AA  
Sbjct: 404 LPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATS 463

Query: 237 KVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPI 296
            + K       E A   I+P V  +S D +   R      I  ++ + G+D T + +LP 
Sbjct: 464 NLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPT 523

Query: 297 FLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIP 356
            L +  D   +VR N+   L ++  ++    L   + P + +L +D+   V+    E + 
Sbjct: 524 VLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALT 583

Query: 357 LLA 359
           +L+
Sbjct: 584 VLS 586

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score = 72.7 bits (178), Expect = 1e-13
 Identities = 28/202 (13%), Positives = 63/202 (31%), Gaps = 1/202 (0%)

Query: 5   LGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLV 64
           L      +G  + +  LLP +  L    +  VR   +E +  +  Q+      +    L 
Sbjct: 387 LDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLC 446

Query: 65  KRLAAGEWFTARVSACGLF-HIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGK 123
                   +  R +A      +      +     +      +  D   + R +    +  
Sbjct: 447 MAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINV 506

Query: 124 FAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNF 183
            +           ++     +  D   +VR    +    +G +L+     + + P++   
Sbjct: 507 LSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKL 566

Query: 184 SQDKSWRVRYMVANQLYELCEA 205
           +QD+   V+Y     L  L  A
Sbjct: 567 TQDQDVDVKYFAQEALTVLSLA 588

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 Length = 244

 Score = 87.6 bits (217), Expect = 1e-19
 Identities = 48/262 (18%), Positives = 80/262 (30%), Gaps = 85/262 (32%)

Query: 142 EDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYE 201
                D     R +AV                   +  +    +D    VR  VA +L  
Sbjct: 56  VQYLADPFWERRAIAVRYSP---------------VEALTPLIRDSDEVVRRAVAYRL-- 98

Query: 202 LCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKEL 261
                  E            L+ D + EVRI  A ++                L  ++++
Sbjct: 99  -----PRE--------QLSALMFDEDREVRITVADRLP---------------LEQLEQM 130

Query: 262 SSDSSQHVRSALASVI-MGMAPLLGKD-------ATIEQL-LPIFLSLLKDEFPDVRLNI 312
           ++D    VR+ +   I  G      +D          ++L       + +D  P+VR  +
Sbjct: 131 AADRDYLVRAYVVQRIPPGRLFRFMRDEDRQVRKLVAKRLPEESLGLMTQDPEPEVRRIV 190

Query: 313 ISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLG 372
            S+L                   ++EL  D  W VRLA +E+  L A +           
Sbjct: 191 ASRLRG---------------DDLLELLHDPDWTVRLAAVEHASLEALRE---------- 225

Query: 373 ALCMQWLQDKVYSIRDAAANNL 394
                 L +    +R A A  L
Sbjct: 226 ------LDEPDPEVRLAIAGRL 241

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 Length = 244

 Score = 79.5 bits (196), Expect = 5e-17
 Identities = 50/301 (16%), Positives = 81/301 (26%), Gaps = 93/301 (30%)

Query: 26  ETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHI 85
              CT  + CV  ++   + R                L  +  A  ++  R  A      
Sbjct: 26  TGRCTPGDACVAVESGRQIDR---------FFRNNPHLAVQYLADPFWERRAIA------ 70

Query: 86  AYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLT 145
              S  + L          L +D   +VRR+ A  L +                    L 
Sbjct: 71  VRYSPVEALT--------PLIRDSDEVVRRAVAYRLPR---------------EQLSALM 107

Query: 146 QDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVA-----NQLY 200
            D+   VR+   +                  L  +   + D+ + VR  V       +L+
Sbjct: 108 FDEDREVRITVADRLP---------------LEQLEQMAADRDYLVRAYVVQRIPPGRLF 152

Query: 201 ELC----EAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILP 256
                    V     +     +   + +D E EVR   A ++                  
Sbjct: 153 RFMRDEDRQVRKLVAKRLPEESLGLMTQDPEPEVRRIVASRLRG---------------D 197

Query: 257 CVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKL 316
            + EL  D    VR A                  E      L  L +  P+VRL I  +L
Sbjct: 198 DLLELLHDPDWTVRLAAV----------------EHASLEALRELDEPDPEVRLAIAGRL 241

Query: 317 D 317
            
Sbjct: 242 G 242

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 Length = 244

 Score = 52.2 bits (125), Expect = 8e-08
 Identities = 37/291 (12%), Positives = 78/291 (26%), Gaps = 94/291 (32%)

Query: 230 VRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDAT 289
           V + +  ++ +F R  NP LA         +  +D     R+              + + 
Sbjct: 36  VAVESGRQIDRFFR-NNPHLA--------VQYLADPFWERRAIAV-----------RYSP 75

Query: 290 IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRL 349
           +E L P    L++D    VR  +  +L +                 +  L  D    VR+
Sbjct: 76  VEALTP----LIRDSDEVVRRAVAYRLPR---------------EQLSALMFDEDREVRI 116

Query: 350 AIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANN-----LKRLAEEFGPE 404
            + + +P                    Q   D+ Y +R           L R   +   +
Sbjct: 117 TVADRLP---------------LEQLEQMAADRDYLVRAYVVQRIPPGRLFRFMRDEDRQ 161

Query: 405 ---WAMQHITPQVLE-MINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDR 460
                 + +  + L  M  +P    R  +   +                   ++    D 
Sbjct: 162 VRKLVAKRLPEESLGLMTQDPEPEVRRIVASRLRG---------------DDLLELLHDP 206

Query: 461 VPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAI 511
              ++    +                      +   ++PD +VR      +
Sbjct: 207 DWTVRLAAVE----------------HASLEALRELDEPDPEVRLAIAGRL 241

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242

 Score = 82.4 bits (203), Expect = 5e-18
 Identities = 36/218 (16%), Positives = 78/218 (35%), Gaps = 13/218 (5%)

Query: 166 LLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG--PEPTRMDLVPAYVRLL 223
           LL+P D ++ +     +  ++K W +R      L +L              LV A  +++
Sbjct: 6   LLDPVDILSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVI 65

Query: 224 -RDNEAEVRIAAAGKVTKFCRILNPELA--IQHILPCVKELSSDSSQHVRSALASVIMGM 280
            +D+   +   A   +    + L    +      +P + E   +   +V +AL   I  +
Sbjct: 66  TKDSNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAI 125

Query: 281 APLLGKDATIEQLLPIFLSLLKDEFPDVR---LNIISK-LDQVNQVIGIDLLSQSLLPAI 336
                   ++E      +  L ++ P V+      I++ L +         L + L  ++
Sbjct: 126 Y----ASTSLEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSL 181

Query: 337 VELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGAL 374
           V+   +    VR +  E +  L   +G       L  +
Sbjct: 182 VKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLADV 219

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242

 Score = 82.0 bits (202), Expect = 9e-18
 Identities = 32/199 (16%), Positives = 77/199 (38%), Gaps = 14/199 (7%)

Query: 325 IDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS---QLGVGFFDDKLGALCMQWLQD 381
           +D+LS+ +     +  E++ W +R   +E +  L +   +L  G +   + AL     +D
Sbjct: 10  VDILSK-MPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKD 68

Query: 382 KVYSIRDAAANNLKRLAEEFGPEWA--MQHITPQVLEMINNPHYLYRMTILRAISLLAPV 439
               +   A   L  LA+     ++       P +LE            ++ A+      
Sbjct: 69  SNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKK----PNVVTALREAIDA 124

Query: 440 MGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVE----KTIRPCLVEL 495
           + +  +       ++ +  ++ P++K   A  +   +     + +     K +   LV+ 
Sbjct: 125 IYASTSLEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKT 184

Query: 496 TEDPDVDVRFFATQAIQSI 514
             +PD  VR  + +A+ ++
Sbjct: 185 LNEPDPTVRDSSAEALGTL 203

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242

 Score = 53.9 bits (129), Expect = 2e-08
 Identities = 29/194 (14%), Positives = 67/194 (34%), Gaps = 19/194 (9%)

Query: 128 VEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLE-----PQDCVAHILPVIVN 182
           ++P  + + +   F D  ++ + ++R  ++E    L KLL             ++  +  
Sbjct: 7   LDPVDILSKMPKDFYDKLEEKKWTLRKESLE---VLEKLLTDHPKLENGEYGALVSALKK 63

Query: 183 -FSQDKSWRVRYMVANQLYELCEAVGP--EPTRMDLVPAYVRLLRDNEAEVRIAAAGKVT 239
             ++D +  +  M    L  L + +           VP+ +   ++ +  V  A    + 
Sbjct: 64  VITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAID 123

Query: 240 KFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA----TIEQLLP 295
                 + E   + I+  +     + +  V+S  A  I          A     ++ L  
Sbjct: 124 AIYASTSLEAQQESIVESLS----NKNPSVKSETALFIARALTRTQPTALNKKLLKLLTT 179

Query: 296 IFLSLLKDEFPDVR 309
             +  L +  P VR
Sbjct: 180 SLVKTLNEPDPTVR 193

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 82.9 bits (205), Expect = 7e-18
 Identities = 54/321 (16%), Positives = 104/321 (32%), Gaps = 54/321 (16%)

Query: 36  VRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILK 95
            + KA +          +    D    L + L          SA  L       A  +  
Sbjct: 6   QKRKASKEYGLYNQ--CKKLNDD---ELFRLLDDHNSLKRISSARVLQLRGGQDAVRLAI 60

Query: 96  TELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDS-VRL 154
                   + C D   + R   A  LG+          + ++ +I  ++  +D+ + VR 
Sbjct: 61  --------EFCSDKNYIRRDIGAFILGQIKI---CKKCEDNVFNILNNMALNDKSACVRA 109

Query: 155 LAVEGCAALGKLLEPQD-CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRM 213
            A+E   +  +  +        I+      + DKS  VR   A  +  + +         
Sbjct: 110 TAIE---STAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVINDK-------- 158

Query: 214 DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSAL 273
             +P  + LL+D   +VR  AA  +    +  N +     I  C  E+  D ++ VR   
Sbjct: 159 ATIPLLINLLKDPNGDVRNWAAFAININ-KYDNSD-----IRDCFVEMLQDKNEEVRIEA 212

Query: 274 ASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLL 333
              +             +++L +    LK     V  +II    +        L  ++LL
Sbjct: 213 IIGLSYRKD--------KRVLSVLCDELKKN--TVYDDIIEAAGE--------LGDKTLL 254

Query: 334 PAIVELAED-RHWRVRLAIIE 353
           P +  +        +  + I+
Sbjct: 255 PVLDTMLYKFDDNEIITSAID 275

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 66.4 bits (162), Expect = 3e-12
 Identities = 34/249 (13%), Positives = 70/249 (28%), Gaps = 32/249 (12%)

Query: 152 VRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPT 211
            +  A +     G   + +         +     D +   R   A  L       G +  
Sbjct: 6   QKRKASK---EYGLYNQCKKLN---DDELFRLLDDHNSLKRISSARVLQLR----GGQDA 55

Query: 212 RMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRS 271
               V   +    D     R   A  + +       E  + +IL       +D S  VR+
Sbjct: 56  ----VRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNVFNIL--NNMALNDKSACVRA 109

Query: 272 ALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQS 331
                               +++        D+  +VR      +          +  ++
Sbjct: 110 TAIESTAQRCK--KNPIYSPKIVEQSQITAFDKSTNVRRATAFAISV--------INDKA 159

Query: 332 LLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAA 391
            +P ++ L +D +  VR      I +          +  +    ++ LQDK   +R  A 
Sbjct: 160 TIPLLINLLKDPNGDVRNWAAFAININKYD------NSDIRDCFVEMLQDKNEEVRIEAI 213

Query: 392 NNLKRLAEE 400
             L    ++
Sbjct: 214 IGLSYRKDK 222

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 64.0 bits (156), Expect = 2e-11
 Identities = 42/254 (16%), Positives = 77/254 (30%), Gaps = 36/254 (14%)

Query: 265 SSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG 324
           S+ + +   +           K    ++L      LL D     R++    L        
Sbjct: 2   SNTYQKRKASKEYGLYNQ--CKKLNDDELFR----LLDDHNSLKRISSARVLQLRG---- 51

Query: 325 IDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG--FFDDKLGALCMQWLQDK 382
                Q  +   +E   D+++  R      +     Q+ +     D+    L    L DK
Sbjct: 52  ----GQDAVRLAIEFCSDKNYIRRDIGAFIL----GQIKICKKCEDNVFNILNNMALNDK 103

Query: 383 VYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS 442
              +R  A  +  +  ++         I  Q      +     R     AIS        
Sbjct: 104 SACVRATAIESTAQRCKKNPI--YSPKIVEQSQITAFDKSTNVRRATAFAIS-------- 153

Query: 443 EITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVD 502
            I     +P++IN  KD   +++   A  +               IR C VE+ +D + +
Sbjct: 154 VINDKATIPLLINLLKDPNGDVRNWAAFAINI------NKYDNSDIRDCFVEMLQDKNEE 207

Query: 503 VRFFATQAIQSIDH 516
           VR  A   +     
Sbjct: 208 VRIEAIIGLSYRKD 221

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 61.4 bits (149), Expect = 1e-10
 Identities = 55/300 (18%), Positives = 100/300 (33%), Gaps = 49/300 (16%)

Query: 216 VPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALAS 275
                RLL D+ +  RI++A            +      +    E  SD +   R   A 
Sbjct: 25  DDELFRLLDDHNSLKRISSA---RVLQLRGGQD-----AVRLAIEFCSDKNYIRRDIGAF 76

Query: 276 VIMGMAPLLGKDATIEQLLPIFL--SLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLL 333
            I+G    +      E  +   L    L D+   VR   I    Q  +   I   S  ++
Sbjct: 77  -ILGQ---IKICKKCEDNVFNILNNMALNDKSACVRATAIESTAQRCKKNPIY--SPKIV 130

Query: 334 PAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANN 393
                 A D+   VR A    I    S +     D     L +  L+D    +R+ AA  
Sbjct: 131 EQSQITAFDKSTNVRRATAFAI----SVIN----DKATIPLLINLLKDPNGDVRNWAAFA 182

Query: 394 LKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVV 453
           +  + +    +     I    +EM+ + +   R+  +  +S             R+L V+
Sbjct: 183 I-NINKYDNSD-----IRDCFVEMLQDKNEEVRIEAIIGLS--------YRKDKRVLSVL 228

Query: 454 INASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVE-LTEDPDVDVRFFATQAIQ 512
            +  K     +  ++ +    L         +KT+ P L   L +  D ++   A   ++
Sbjct: 229 CDELKK--NTVYDDIIEAAGELG--------DKTLLPVLDTMLYKFDDNEIITSAIDKLK 278

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 54.0 bits (130), Expect = 3e-08
 Identities = 43/297 (14%), Positives = 86/297 (28%), Gaps = 73/297 (24%)

Query: 22  LPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACG 81
           +      C+ +    RD     L +I    +  D V     ++  +              
Sbjct: 56  VRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNV---FNILNNM-------------- 98

Query: 82  LFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIF 141
                                     D    VR +A  +  +          K  I+   
Sbjct: 99  -----------------------ALNDKSACVRATAIESTAQRCKKNPIYSPK--IVEQS 133

Query: 142 EDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYE 201
           +    D   +VR        A+  + +        +P+++N  +D +  VR   A  +  
Sbjct: 134 QITAFDKSTNVRRATAF---AISVINDKA-----TIPLLINLLKDPNGDVRNWAAFAINI 185

Query: 202 LCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKEL 261
                       D+   +V +L+D   EVRI A          L+     + +L  + + 
Sbjct: 186 N--KYDNS----DIRDCFVEMLQDKNEEVRIEAI-------IGLS-YRKDKRVLSVLCDE 231

Query: 262 SSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQ 318
              ++  V   +          LG    +  L  +   L K +  ++  + I KL +
Sbjct: 232 LKKNT--VYDDIIEAAG----ELGDKTLLPVLDTM---LYKFDDNEIITSAIDKLKR 279

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 45.6 bits (108), Expect = 2e-05
 Identities = 36/217 (16%), Positives = 65/217 (29%), Gaps = 34/217 (15%)

Query: 20  VLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSA 79
           V           +  CVR  A+ES  +   +                         R +A
Sbjct: 91  VFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSPKIVE-QSQITAFDKSTNVRRATA 149

Query: 80  CGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMS 139
             +  I   +   +L          L +D    VR  AA  +              DI  
Sbjct: 150 FAISVINDKATIPLL--------INLLKDPNGDVRNWAAFAININKYDNS------DIRD 195

Query: 140 IFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQL 199
            F ++ QD  + VR+ A+     L    + +     +L V+ +  +  +  V   +    
Sbjct: 196 CFVEMLQDKNEEVRIEAII---GLSYRKDKR-----VLSVLCDELKKNT--VYDDIIEAA 245

Query: 200 YELCEAVGPEPTRMDLVPAYVRLLRDNE-AEVRIAAA 235
            EL +          L+P    +L   +  E+  +A 
Sbjct: 246 GELGDK--------TLLPVLDTMLYKFDDNEIITSAI 274

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 43.2 bits (102), Expect = 1e-04
 Identities = 25/186 (13%), Positives = 52/186 (27%), Gaps = 44/186 (23%)

Query: 21  LLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLV------DWYIPLVKRLAAGEWFT 74
           ++   +     + T VR     ++  I  +     L+      +  +    R  A     
Sbjct: 129 IVEQSQITAFDKSTNVRRATAFAISVINDKATIPLLINLLKDPNGDV----RNWA----- 179

Query: 75  ARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLK 134
               A  +         D           ++ QD    VR  A   L         + L 
Sbjct: 180 --AFAININKYDNSDIRDCF--------VEMLQDKNEEVRIEAIIGLSYRKDKRVLSVL- 228

Query: 135 TDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNF-SQDKSWRVRY 193
                      +  +++V    +E   A G+L +       +LPV+     +     +  
Sbjct: 229 ---------CDELKKNTVYDDIIE---AAGELGDKT-----LLPVLDTMLYKFDDNEIIT 271

Query: 194 MVANQL 199
              ++L
Sbjct: 272 SAIDKL 277

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230

 Score = 80.1 bits (196), Expect = 6e-16
 Identities = 80/567 (14%), Positives = 167/567 (29%), Gaps = 58/567 (10%)

Query: 1   MAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWY 60
           MA+ L      +  V     +L  L    T     VR + + +L  +         VD  
Sbjct: 158 MADMLSRQGGLL--VNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLI 215

Query: 61  IPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIY---TQLCQDDMPMVRRSA 117
             L+  L+  +  +   +           A   +   L  I     + C  D   +R   
Sbjct: 216 EHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYC 275

Query: 118 ASNLGKFAATVE---PAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVA 174
                 F          H+ T I    + LT D   +      +  A      +  D  +
Sbjct: 276 IQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGS 335

Query: 175 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVG--PEPTRMDLVPAYVRLLRDNEAEVRI 232
                      D SW+VR   A  L  +              + PA +   ++ E  V+ 
Sbjct: 336 DDEYSD---DDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKA 392

Query: 233 AAAGKVTKFCRILNP---------------------ELAIQHILPCVKELSSDSSQHVRS 271
                     +   P                     +  + +I+  + +   + S   R 
Sbjct: 393 DVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQ 452

Query: 272 ALASVIMGMAPLLGKDAT--IEQLLPIFLSLLKDEFPDVRLNI-----ISKLDQVNQVIG 324
              +++  +  +L    T  I  L+P  +  L D+     L I     +  +   +    
Sbjct: 453 CCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQV 512

Query: 325 IDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF------FDDKLGALCMQW 378
                Q+L+P +V    D  +++    +     L   +              +  L    
Sbjct: 513 FHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCT 572

Query: 379 LQ-----DKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAI 433
           ++     D    +++ A + + ++    G            + +    + + R+T ++A+
Sbjct: 573 IKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKAL 632

Query: 434 SLLAPVMGS---EITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIR- 489
           +L+A               +P++ +  +     +K      L  LI     S+    I  
Sbjct: 633 TLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDA 692

Query: 490 --PCLVELTEDPDVDVRFFATQAIQSI 514
               L  L  + D+ V   A   + ++
Sbjct: 693 VLDELPPLISESDMHVSQMAISFLTTL 719

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230

 Score = 68.2 bits (165), Expect = 4e-12
 Identities = 57/403 (14%), Positives = 128/403 (31%), Gaps = 34/403 (8%)

Query: 137 IMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP------QDCVAHILPVIVNFSQDKSWR 190
           I ++ E +T  D+D  R +A      L   L+        D    ++ +I+   +DK+  
Sbjct: 8   ISNLLEKMTSSDKD-FRFMATN---DLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGE 63

Query: 191 VRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE-- 248
           V+ +    L  L   V  E     +V      +  ++ ++R  ++  +      L P   
Sbjct: 64  VQNLAVKCLGPLVSKV-KEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASS 122

Query: 249 ------LAIQHILPCVKELSSDSS-----QHVRSALASVIMGMAPLLGKDATIEQLLPIF 297
                    + I   +    +              +A ++     LL        +L   
Sbjct: 123 GSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNF--HPSILTCL 180

Query: 298 LSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPL 357
           L  L      VR   I  L  +    G  +    +   + EL+++         I+ I  
Sbjct: 181 LPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAA 240

Query: 358 LASQLGVGFFD--DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVL 415
           ++ Q G    +  +K+  L +++       +R+      +        E  +      ++
Sbjct: 241 ISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKE--VYPHVSTII 298

Query: 416 EMINN--PHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQ 473
            +      +              A          +      +   D    ++   AK L 
Sbjct: 299 NICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLD 358

Query: 474 SLIPIVDQSMVE--KTIRPCLVELTEDPDVDVRFFATQAIQSI 514
           +++    + + E  KT+ P L+   ++ + +V+     A  S+
Sbjct: 359 AVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSL 401

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230

 Score = 66.3 bits (160), Expect = 1e-11
 Identities = 36/244 (14%), Positives = 83/244 (34%), Gaps = 15/244 (6%)

Query: 288 ATIEQLLPIFLSLLKDEFPDVR---LNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRH 344
           A+    +   L  +     D R    N +    Q + +   D   + ++  I++L ED++
Sbjct: 2   ASASYHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKN 61

Query: 345 WRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE 404
             V+   ++ +  L S++     +  +  LC   +      +RD ++  LK +  E  P 
Sbjct: 62  GEVQNLAVKCLGPLVSKVKEYQVETIVDTLCTN-MLSDKEQLRDISSIGLKTVIGELPPA 120

Query: 405 WAMQHITPQVLEMI---------NNPHYLYRMTILRAISLLAPVMGSEITCS--RLLPVV 453
            +   +   V + I                ++  L  ++ +    G  +      +L  +
Sbjct: 121 SSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCL 180

Query: 454 INASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQS 513
           +         ++      L  L+      +    I   L EL+++  +       Q I +
Sbjct: 181 LPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAA 240

Query: 514 IDHV 517
           I   
Sbjct: 241 ISRQ 244

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230

 Score = 55.5 bits (132), Expect = 3e-08
 Identities = 64/515 (12%), Positives = 154/515 (29%), Gaps = 62/515 (12%)

Query: 19   HVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVS 78
               +  L+     +E   +++A+  + +I   + ++   D    L   L   +    R++
Sbjct: 570  TCTIKRLKAADIDQEV--KERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLT 627

Query: 79   ACGLFHIAYPSAPDI----LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPA--- 131
                  +   S   I    +  E   I     + +   ++    S L         +   
Sbjct: 628  TVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTA 687

Query: 132  HLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP--QDCVAHILPVIVNFSQDKSW 189
             +   ++     L  +    V  +A+     L K+           IL  ++   +    
Sbjct: 688  AMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLL 747

Query: 190  RVRYMVA--NQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAA----GKVTKFCR 243
            +   + A  +    L          MDL+      +      +    +     K      
Sbjct: 748  QGGALSAMLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALT 807

Query: 244  ILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKD 303
               P+     +   ++++ +  S      LA + +G        +   +L  + L     
Sbjct: 808  RACPKEGPAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHIDLSGQLELKSVILEAFSS 867

Query: 304  EFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG 363
               +V+      L  +  V  +      +L  I    + ++  +  ++ E I   +    
Sbjct: 868  PSEEVKSAASYALGSI-SVGNLPEYLPFVLQEITSQPKRQYLLLH-SLKEIISSASVVGL 925

Query: 364  VGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHY 423
              + ++    L ++  +      R+  A  L +L     PE  +    P++   + +   
Sbjct: 926  KPYVENIWALL-LKHCECAEEGTRNVVAECLGKLTL-IDPETLL----PRLKGYLISGSS 979

Query: 424  LYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSM 483
              R +++ A+                               KF ++   Q + P++   +
Sbjct: 980  YARSSVVTAV-------------------------------KFTISDHPQPIDPLLKNCI 1008

Query: 484  VEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVM 518
                     ++  EDPD++VR  A     S  H  
Sbjct: 1009 ------GDFLKTLEDPDLNVRRVALVTFNSAAHNK 1037

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230

 Score = 55.1 bits (131), Expect = 4e-08
 Identities = 41/249 (16%), Positives = 90/249 (36%), Gaps = 15/249 (6%)

Query: 105  LCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALG 164
                    +R  A  +LG+    ++ +    ++ S+  +      + V+  A     ALG
Sbjct: 826  KNSRSTDSIRLLALLSLGEVGHHIDLSGQL-ELKSVILEAFSSPSEEVKSAA---SYALG 881

Query: 165  KLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYEL---CEAVGPEPTRMDLVPAYVR 221
             +      +   LP ++        + +Y++ + L E+      VG +P   ++    ++
Sbjct: 882  SISVGN--LPEYLPFVLQ-EITSQPKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLK 938

Query: 222  LLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMA 281
                 E   R   A  + K   I +PE  +  +   +   SS +   V +A+   I    
Sbjct: 939  HCECAEEGTRNVVAECLGKLTLI-DPETLLPRLKGYLISGSSYARSSVVTAVKFTISDHP 997

Query: 282  PLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQ--SLLPAIVEL 339
              +  D  ++  +  FL  L+D   +VR   +   +         +     ++LP +   
Sbjct: 998  QPI--DPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLLDTVLPHLYNE 1055

Query: 340  AEDRHWRVR 348
             + R   +R
Sbjct: 1056 TKVRKELIR 1064

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253

 Score = 69.7 bits (170), Expect = 1e-13
 Identities = 37/257 (14%), Positives = 97/257 (37%), Gaps = 11/257 (4%)

Query: 185 QDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRI 244
           +++ + +R  +AN    L + +        ++   + LL D+   V   A   +    + 
Sbjct: 4   EEEEFDIREALANG-EHLEKILIMAKYDESVLKKLIELLDDDLWTVVKNAISIIMVIAK- 61

Query: 245 LNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDE 304
              +L    +      L    +  +   +A     MA    +   ++ ++P+  +  +  
Sbjct: 62  TREDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPE--LVKSMIPVLFANYRIG 119

Query: 305 FPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV 364
               ++N+   L+++ +   + +   S++   + +   ++   +L  + +I  +      
Sbjct: 120 DEKTKINVSYALEEIAKANPMLM--ASIVRDFMSMLSSKNREDKLTALNFIEAMGEN-SF 176

Query: 365 GFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYL 424
            + +  L  + +  L D    +R +A   L  LA        ++ +  + LE +N+   L
Sbjct: 177 KYVNPFLPRI-INLLHDGDEIVRASAVEALVHLATL---NDKLRKVVIKRLEELNDTSSL 232

Query: 425 YRMTILRAISLLAPVMG 441
              T+   IS L  + G
Sbjct: 233 VNKTVKEGISRLLLLEG 249

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253

 Score = 63.2 bits (153), Expect = 3e-11
 Identities = 42/260 (16%), Positives = 97/260 (37%), Gaps = 14/260 (5%)

Query: 32  EETCVRDKAV--ESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPS 89
           EE  +R+     E L +I    +  +       L++ L    W   + +   +  IA  +
Sbjct: 6   EEFDIREALANGEHLEKILIMAKYDE--SVLKKLIELLDDDLWTVVKNAISIIMVIA-KT 62

Query: 90  APDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQ 149
             D+ +  L+ +++ L + +   + +  A   G+ A   +P  +K+ I  +F +    D 
Sbjct: 63  REDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAK-EKPELVKSMIPVLFANYRIGD- 120

Query: 150 DSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE 209
           +  ++        + K       +A I+   ++    K+   +    N +  + E    +
Sbjct: 121 EKTKINVSYALEEIAKANP--MLMASIVRDFMSMLSSKNREDKLTALNFIEAMGEN-SFK 177

Query: 210 PTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHV 269
                 +P  + LL D +  VR +A         +      ++ ++    E  +D+S  V
Sbjct: 178 YVN-PFLPRIINLLHDGDEIVRASAV---EALVHLATLNDKLRKVVIKRLEELNDTSSLV 233

Query: 270 RSALASVIMGMAPLLGKDAT 289
              +   I  +  L G  ++
Sbjct: 234 NKTVKEGISRLLLLEGHSSS 253

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253

 Score = 62.8 bits (152), Expect = 3e-11
 Identities = 36/215 (16%), Positives = 67/215 (31%), Gaps = 9/215 (4%)

Query: 21  LLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSAC 80
           +L  L  L   +   V   A+  +  I    RE         L   L   E         
Sbjct: 33  VLKKLIELLDDDLWTVVKNAISIIMVIAKT-REDLYEPMLKKLFSLLKKSEAIPLTQEIA 91

Query: 81  GLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSI 140
             F       P+++K+ +  ++    +      + + +  L +  A   P  + + +   
Sbjct: 92  KAFGQMAKEKPELVKSMIPVLFANY-RIGDEKTKINVSYALEEI-AKANPMLMASIVRDF 149

Query: 141 FEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLY 200
              L+  +++  +L A+    A+G+       V   LP I+N   D    VR      L 
Sbjct: 150 MSMLSSKNRE-DKLTALNFIEAMGE--NSFKYVNPFLPRIINLLHDGDEIVRASAVEALV 206

Query: 201 ELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAA 235
            L            +V   +  L D  + V     
Sbjct: 207 HLAT---LNDKLRKVVIKRLEELNDTSSLVNKTVK 238

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253

 Score = 55.9 bits (134), Expect = 7e-09
 Identities = 30/215 (13%), Positives = 82/215 (38%), Gaps = 8/215 (3%)

Query: 301 LKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS 360
           +++E  D+R   ++  + + +++ +    +S+L  ++EL +D  W V    I  I ++A 
Sbjct: 3   MEEEEFDIR-EALANGEHLEKILIMAKYDESVLKKLIELLDDDLWTVVKNAISIIMVIAK 61

Query: 361 QLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINN 420
                 ++  L  L     + +   +    A    ++A+E      ++ + P +      
Sbjct: 62  T-REDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKP--ELVKSMIPVLFANYRI 118

Query: 421 PHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD 480
                ++ +  A+  +A      +  + ++   ++    +    K      ++++     
Sbjct: 119 GDEKTKINVSYALEEIAKANPMLM--ASIVRDFMSMLSSKNREDKLTALNFIEAMGEN-- 174

Query: 481 QSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSID 515
                    P ++ L  D D  VR  A +A+  + 
Sbjct: 175 SFKYVNPFLPRIINLLHDGDEIVRASAVEALVHLA 209

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253

 Score = 55.1 bits (132), Expect = 1e-08
 Identities = 35/190 (18%), Positives = 66/190 (34%), Gaps = 11/190 (5%)

Query: 21  LLPPLETLCT-VEETCVRDKAVESLCRIGSQMRESDLVDWYIP-LVKRLAAGEWFTARVS 78
           +L  L +L    E   +  +  ++  ++  +  + +LV   IP L      G+  T    
Sbjct: 70  MLKKLFSLLKKSEAIPLTQEIAKAFGQMAKE--KPELVKSMIPVLFANYRIGDEKTKINV 127

Query: 79  ACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIM 138
           +  L  IA  + P ++ + +R   + L        + +A + +                +
Sbjct: 128 SYALEEIA-KANPMLMASIVRDFMSML-SSKNREDKLTALNFIEAMG--ENSFKYVNPFL 183

Query: 139 SIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQ 198
               +L  D  + VR  AVE   AL  L    D +  ++   +    D S  V   V   
Sbjct: 184 PRIINLLHDGDEIVRASAVE---ALVHLATLNDKLRKVVIKRLEELNDTSSLVNKTVKEG 240

Query: 199 LYELCEAVGP 208
           +  L    G 
Sbjct: 241 ISRLLLLEGH 250

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852

 Score = 71.4 bits (174), Expect = 3e-13
 Identities = 67/464 (14%), Positives = 155/464 (33%), Gaps = 36/464 (7%)

Query: 39  KAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTEL 98
           K   +   + + +   +L+   +PL+K L     +  + S   +           +   L
Sbjct: 339 KCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYL 398

Query: 99  RSIYTQLCQ---DDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLL 155
             +   L Q   D   +VR      L ++A  V      T +  +  +L +   DS + +
Sbjct: 399 PELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRV 458

Query: 156 AVEGCAALGKLLEPQD-----CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP 210
               C+A   L E         +A+IL  +V        +   ++ + +  L ++VG   
Sbjct: 459 QEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHL 518

Query: 211 TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVR 270
            + + +   +  L              + K+  + + +  +  +L C+  +++       
Sbjct: 519 NKPEYIQMLMPPL--------------IQKWNMLKDEDKDLFPLLECLSSVATALQSGFL 564

Query: 271 SALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID---- 326
                V      L+ K      L        +    D  +  +  L  + + +G +    
Sbjct: 565 PYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQL 624

Query: 327 LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLQDKVY 384
           +   ++L  + +  +D+   VR +    +  L                 +    L  +  
Sbjct: 625 VARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFI 684

Query: 385 SIRDAAANNLKRLAEEFGPEWA--MQHITPQVLEMINNPHYLYRMT--ILRAISLLAPVM 440
           S+ + A   +  ++ + G E    +  +  Q++E+IN P+    +       I  L  V 
Sbjct: 685 SVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVC 744

Query: 441 GSEITCSRLLPVVINASKDRVPNIKFNVAK--VLQSLIPIVDQS 482
             E+     L   I      + NI+ N  K    + +  ++  +
Sbjct: 745 PQEVAPM--LQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVN 786

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852

 Score = 50.2 bits (119), Expect = 2e-06
 Identities = 41/275 (14%), Positives = 94/275 (34%), Gaps = 18/275 (6%)

Query: 161 AALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVA----NQLYELCEAVGPEPTRMDLV 216
             L +L +  D   + L  ++   + +    R +      N +    +   P      + 
Sbjct: 35  QKLEQLNQYPDFNNY-LIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNF-PNGVTDFIK 92

Query: 217 PAYVRLLRDNEAEVRIAAAGKVTKFCRILN----PELAIQHILPCVKELSSDSSQHVRSA 272
              +  + D+   +R      +T           P+L +  +   +     ++ +    A
Sbjct: 93  SECLNNIGDSSPLIRATVGILITTIASKGELQNWPDL-LPKLCSLLDSEDYNTCEGAFGA 151

Query: 273 LASVIMGMAPLLGKD---ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLS 329
           L  +    A +L  D     +  ++P FL   K   P +R + ++ ++Q        L+ 
Sbjct: 152 LQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALML 211

Query: 330 --QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD--DKLGALCMQWLQDKVYS 385
              S +  +  LA D    VR  +   + +L              +    +Q  QD+  +
Sbjct: 212 HIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDEN 271

Query: 386 IRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINN 420
           +   A      LAE+   +  +    P+++ ++ N
Sbjct: 272 VALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVN 306

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852

 Score = 45.2 bits (106), Expect = 4e-05
 Identities = 21/152 (13%), Positives = 54/152 (35%), Gaps = 12/152 (7%)

Query: 373 ALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE-WAMQHITPQVLEMINNPHYLYRMTILR 431
           + C+  + D    IR      +  +A +   + W    + P++  ++++  Y        
Sbjct: 93  SECLNNIGDSSPLIRATVGILITTIASKGELQNW--PDLLPKLCSLLDSEDYNTCEGAFG 150

Query: 432 AISLLAPVMGSEIT-------CSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMV 484
           A+  +       +         + ++P  +   K   P I+ +    +   I    Q+++
Sbjct: 151 ALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALM 210

Query: 485 EK--TIRPCLVELTEDPDVDVRFFATQAIQSI 514
               +    L  L  D + +VR    +A+  +
Sbjct: 211 LHIDSFIENLFALAGDEEPEVRKNVCRALVML 242

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861

 Score = 66.4 bits (161), Expect = 1e-11
 Identities = 70/551 (12%), Positives = 161/551 (29%), Gaps = 66/551 (11%)

Query: 15  VEHAHVLLPPL--ETLCTVEETCVRDKAVESLCR----IGSQMRESDLVDWYIPLVKRLA 68
           V  ++ +L  +      T     VR  A+ +L      I + M      ++ + +V    
Sbjct: 174 VSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEAT 233

Query: 69  AGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATV 128
             E    + +A G            +K  +      L    M       AS   +F +T+
Sbjct: 234 QAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTI 293

Query: 129 --------------------EPAHLKTDIMSIFEDLTQ---------DDQDSVRLLAVEG 159
                                     + I  +  +L           +D D    ++   
Sbjct: 294 CEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGA 353

Query: 160 CAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRY---MVANQLYELCEAVGPEPTRMDLV 216
           C  L         +  +L  +       +WR R    M    + +  + V         +
Sbjct: 354 CLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQAL 413

Query: 217 PAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQH----ILPCVKELSSDSSQHVRSA 272
           P+ + L+ D   +V+   A  + +    +   +  Q     ++        D  +   + 
Sbjct: 414 PSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDHPKVATNC 473

Query: 273 LASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSL 332
             ++I            +EQL     S + + +P +   +I   ++++          S 
Sbjct: 474 SWTIIN----------LVEQLAEATPSPIYNFYPALVDGLIGAANRIDN---EFNARASA 520

Query: 333 LPAIVELAEDRHWRVRLAIIEYIPLLASQLG--VGFFDDKLGALCMQWLQDKVYSIRDAA 390
             A+  + E     V          +  +LG  +   +++L     Q LQ+   +I    
Sbjct: 521 FSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVL 580

Query: 391 ANNLKRLAEEFGPEWAMQHITPQVLEMINNPHY-LYRMTILRAISLLAPVMGSEIT--CS 447
           A  +++      P      +      ++           +  AIS LA  +G        
Sbjct: 581 AAVIRKSPSSVEP--VADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLE 638

Query: 448 RLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVE--KTIRPCLVELTEDPDV--DV 503
              P ++ A       +       +  +   +++        +   L ++  +P+   ++
Sbjct: 639 TFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARREL 698

Query: 504 RFFATQAIQSI 514
           +         I
Sbjct: 699 KPAVLSVFGDI 709

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 62.3 bits (152), Expect = 2e-11
 Identities = 48/238 (20%), Positives = 93/238 (39%), Gaps = 45/238 (18%)

Query: 162 ALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVR 221
                 +P+      + + +   QD S+ VR   A  L      +G E      V   ++
Sbjct: 6   HHHHHTDPEK-----VEMYIKNLQDDSYYVRRAAAYAL----GKIGDERA----VEPLIK 52

Query: 222 LLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMA 281
            L+D +A VR AAA  + +    +  E A++ ++    +   D    VR + A+V +G  
Sbjct: 53  ALKDEDAWVRRAAADALGQ----IGDERAVEPLI----KALKDEDGWVRQS-AAVALGQ- 102

Query: 282 PLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAE 341
             +G +  +E L+      LKDE   VR+     L +    IG     +  +  +++  +
Sbjct: 103 --IGDERAVEPLIK----ALKDEDWFVRIAAAFALGE----IG----DERAVEPLIKALK 148

Query: 342 DRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAE 399
           D    VR +  + +     ++G     +++ A   +  +      R  A N L+    
Sbjct: 149 DEDGWVRQSAADAL----GEIG----GERVRAAMEKLAETGTGFARKVAVNYLETHKS 198

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 60.4 bits (147), Expect = 8e-11
 Identities = 44/215 (20%), Positives = 80/215 (37%), Gaps = 40/215 (18%)

Query: 104 QLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAAL 163
           +  QDD   VRR+AA  LGK         L            +D+   VR  A +   AL
Sbjct: 21  KNLQDDSYYVRRAAAYALGKIGDERAVEPL--------IKALKDEDAWVRRAAAD---AL 69

Query: 164 GKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLL 223
           G++ + +      +  ++   +D+   VR   A  L ++ +           V   ++ L
Sbjct: 70  GQIGDER-----AVEPLIKALKDEDGWVRQSAAVALGQIGDE--------RAVEPLIKAL 116

Query: 224 RDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPL 283
           +D +  VRIAAA         +  E A++ ++  +K    D    VR + A  +  +   
Sbjct: 117 KDEDWFVRIAAA----FALGEIGDERAVEPLIKALK----DEDGWVRQSAADALGEIGG- 167

Query: 284 LGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQ 318
                  E++      L +      R   ++ L+ 
Sbjct: 168 -------ERVRAAMEKLAETGTGFARKVAVNYLET 195

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 57.7 bits (140), Expect = 7e-10
 Identities = 44/214 (20%), Positives = 75/214 (35%), Gaps = 39/214 (18%)

Query: 22  LPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACG 81
           +         +   VR  A  +L +IG +      V+   PL+K L   + +  R +A  
Sbjct: 16  VEMYIKNLQDDSYYVRRAAAYALGKIGDE----RAVE---PLIKALKDEDAWVRRAAADA 68

Query: 82  LFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIF 141
           L  I    A + L   L        +D+   VR+SAA  LG+         L        
Sbjct: 69  LGQIGDERAVEPLIKAL--------KDEDGWVRQSAAVALGQIGDERAVEPL-------- 112

Query: 142 EDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYE 201
               +D+   VR+ A     ALG++ + +      +  ++   +D+   VR   A+ L E
Sbjct: 113 IKALKDEDWFVRIAAAF---ALGEIGDER-----AVEPLIKALKDEDGWVRQSAADALGE 164

Query: 202 LCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAA 235
           +            +  A  +L        R  A 
Sbjct: 165 IGGE--------RVRAAMEKLAETGTGFARKVAV 190

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 54.2 bits (131), Expect = 1e-08
 Identities = 35/226 (15%), Positives = 84/226 (37%), Gaps = 44/226 (19%)

Query: 291 EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLA 350
            + + +++  L+D+   VR      L ++          +  +  +++  +D    VR A
Sbjct: 13  PEKVEMYIKNLQDDSYYVRRAAAYALGKIG--------DERAVEPLIKALKDEDAWVRRA 64

Query: 351 IIEYIPLLASQLGVGFFDDK--LGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQ 408
             + +         G   D+  +  L ++ L+D+   +R +AA  L ++ +E        
Sbjct: 65  AADAL---------GQIGDERAVEPL-IKALKDEDGWVRQSAAVALGQIGDE-------- 106

Query: 409 HITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNV 468
                +++ + +  +  R+    A+         EI   R +  +I A KD    ++ + 
Sbjct: 107 RAVEPLIKALKDEDWFVRIAAAFALG--------EIGDERAVEPLIKALKDEDGWVRQSA 158

Query: 469 AKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSI 514
           A  L  +          + +R  + +L E      R  A   +++ 
Sbjct: 159 ADALGEI--------GGERVRAAMEKLAETGTGFARKVAVNYLETH 196

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 51.5 bits (124), Expect = 9e-08
 Identities = 38/178 (21%), Positives = 67/178 (37%), Gaps = 31/178 (17%)

Query: 22  LPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACG 81
           + PL      E+  VR  A ++L +IG +      V+   PL+K L   + +  + +A  
Sbjct: 47  VEPLIKALKDEDAWVRRAAADALGQIGDE----RAVE---PLIKALKDEDGWVRQSAAVA 99

Query: 82  LFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIF 141
           L  I    A + L   L+        D+   VR +AA  LG+         L        
Sbjct: 100 LGQIGDERAVEPLIKALK--------DEDWFVRIAAAFALGEIGDERAVEPLI------- 144

Query: 142 EDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQL 199
               +D+   VR  A +   ALG++   +     +   +   ++  +   R +  N L
Sbjct: 145 -KALKDEDGWVRQSAAD---ALGEIGGER-----VRAAMEKLAETGTGFARKVAVNYL 193

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 50.4 bits (121), Expect = 2e-07
 Identities = 47/238 (19%), Positives = 90/238 (37%), Gaps = 45/238 (18%)

Query: 199 LYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCV 258
            +       PE      V  Y++ L+D+   VR AAA  + K    +  E A++ ++  +
Sbjct: 4   SHHHHHHTDPE-----KVEMYIKNLQDDSYYVRRAAAYALGK----IGDERAVEPLIKAL 54

Query: 259 KELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQ 318
           K    D    VR A A+  +G    +G +  +E L+      LKDE   VR +    L Q
Sbjct: 55  K----DEDAWVRRA-AADALGQ---IGDERAVEPLIK----ALKDEDGWVRQSAAVALGQ 102

Query: 319 VNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQW 378
           +          +  +  +++  +D  W VR+A    +  +  +  V    + L       
Sbjct: 103 IG--------DERAVEPLIKALKDEDWFVRIAAAFALGEIGDERAV----EPLIKA---- 146

Query: 379 LQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLL 436
           L+D+   +R +AA+ L  +  E         +   + ++        R   +  +   
Sbjct: 147 LKDEDGWVRQSAADALGEIGGE--------RVRAAMEKLAETGTGFARKVAVNYLETH 196

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 40.8 bits (96), Expect = 3e-04
 Identities = 21/107 (19%), Positives = 39/107 (36%), Gaps = 15/107 (14%)

Query: 22  LPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACG 81
           + PL      E+  VR  A  +L  IG +      V+   PL+K L   + +  + +A  
Sbjct: 109 VEPLIKALKDEDWFVRIAAAFALGEIGDE----RAVE---PLIKALKDEDGWVRQSAADA 161

Query: 82  LFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATV 128
           L  I        ++        +L +      R+ A + L    + +
Sbjct: 162 LGEIGGERVRAAME--------KLAETGTGFARKVAVNYLETHKSLI 200

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 60.8 bits (148), Expect = 7e-11
 Identities = 43/212 (20%), Positives = 77/212 (36%), Gaps = 40/212 (18%)

Query: 107 QDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKL 166
           QDD   VRR+AA  LGK         L            +D+   VR  A +   ALG++
Sbjct: 29  QDDSYYVRRAAAYALGKIGDERAVEPL--------IKALKDEDAWVRRAAAD---ALGQI 77

Query: 167 LEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDN 226
            + +      +  ++   +D+   VR   A  L ++ +           V   ++ L+D 
Sbjct: 78  GDER-----AVEPLIKALKDEDGWVRQSAAVALGQIGDE--------RAVEPLIKALKDE 124

Query: 227 EAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK 286
           +  VRIAAA         L  E+  +  +  + +   D    VR + A  +      +G 
Sbjct: 125 DWFVRIAAA-------FAL-GEIGDERAVEPLIKALKDEDGWVRQSAADALG----EIGG 172

Query: 287 DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQ 318
           +     +      L +      R   ++ L+ 
Sbjct: 173 ERVRAAMEK----LAETGTGFARKVAVNYLET 200

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 60.8 bits (148), Expect = 7e-11
 Identities = 43/214 (20%), Positives = 75/214 (35%), Gaps = 39/214 (18%)

Query: 22  LPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACG 81
           +         +   VR  A  +L +IG +      V+   PL+K L   + +  R +A  
Sbjct: 21  VEMYIKNLQDDSYYVRRAAAYALGKIGDE----RAVE---PLIKALKDEDAWVRRAAADA 73

Query: 82  LFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIF 141
           L  I    A + L         +  +D+   VR+SAA  LG+         L        
Sbjct: 74  LGQIGDERAVEPL--------IKALKDEDGWVRQSAAVALGQIGDERAVEPL-------- 117

Query: 142 EDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYE 201
               +D+   VR+ A     ALG++ + +      +  ++   +D+   VR   A+ L E
Sbjct: 118 IKALKDEDWFVRIAAAF---ALGEIGDER-----AVEPLIKALKDEDGWVRQSAADALGE 169

Query: 202 LCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAA 235
           +            +  A  +L        R  A 
Sbjct: 170 IGGE--------RVRAAMEKLAETGTGFARKVAV 195

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 60.8 bits (148), Expect = 7e-11
 Identities = 49/249 (19%), Positives = 95/249 (38%), Gaps = 49/249 (19%)

Query: 161 AALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYV 220
           AA     +P+      + + +   QD S+ VR   A  L      +G E      V   +
Sbjct: 10  AAAPLRADPEK-----VEMYIKNLQDDSYYVRRAAAYAL----GKIGDERA----VEPLI 56

Query: 221 RLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGM 280
           + L+D +A VR AAA  + +    +  E A++ ++    +   D    VR + A+V +G 
Sbjct: 57  KALKDEDAWVRRAAADALGQ----IGDERAVEPLI----KALKDEDGWVRQS-AAVALGQ 107

Query: 281 APLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELA 340
              +G +  +E L+      LKDE   VR+     L ++          +  +  +++  
Sbjct: 108 ---IGDERAVEPLIK----ALKDEDWFVRIAAAFALGEIG--------DERAVEPLIKAL 152

Query: 341 EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEE 400
           +D    VR +  + +     ++G     +++ A   +  +      R  A N L+     
Sbjct: 153 KDEDGWVRQSAADAL----GEIG----GERVRAAMEKLAETGTGFARKVAVNYLETH--- 201

Query: 401 FGPEWAMQH 409
                   H
Sbjct: 202 -KSFNHHHH 209

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 58.9 bits (143), Expect = 4e-10
 Identities = 42/211 (19%), Positives = 78/211 (36%), Gaps = 40/211 (18%)

Query: 62  PLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNL 121
             +K L    ++  R +A  L  I    A + L         +  +D+   VRR+AA  L
Sbjct: 23  MYIKNLQDDSYYVRRAAAYALGKIGDERAVEPL--------IKALKDEDAWVRRAAADAL 74

Query: 122 GKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIV 181
           G+         L            +D+   VR  A     ALG++ + +      +  ++
Sbjct: 75  GQIGDERAVEPL--------IKALKDEDGWVRQSAAV---ALGQIGDERA-----VEPLI 118

Query: 182 NFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKF 241
              +D+ W VR   A  L E+ +           V   ++ L+D +  VR +AA      
Sbjct: 119 KALKDEDWFVRIAAAFALGEIGDE--------RAVEPLIKALKDEDGWVRQSAA------ 164

Query: 242 CRILNPELAIQHILPCVKELSSDSSQHVRSA 272
              L  E+  + +   +++L+   +   R  
Sbjct: 165 -DALG-EIGGERVRAAMEKLAETGTGFARKV 193

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 56.2 bits (136), Expect = 3e-09
 Identities = 39/236 (16%), Positives = 85/236 (36%), Gaps = 48/236 (20%)

Query: 281 APLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELA 340
           APL      +E  +      L+D+   VR      L ++          +  +  +++  
Sbjct: 12  APLRADPEKVEMYIK----NLQDDSYYVRRAAAYALGKIG--------DERAVEPLIKAL 59

Query: 341 EDRHWRVRLAIIEYIPLLASQLGVGFFDDK--LGALCMQWLQDKVYSIRDAAANNLKRLA 398
           +D    VR A  + +         G   D+  +  L ++ L+D+   +R +AA  L ++ 
Sbjct: 60  KDEDAWVRRAAADAL---------GQIGDERAVEPL-IKALKDEDGWVRQSAAVALGQIG 109

Query: 399 EEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASK 458
           +E             +++ + +  +  R+    A+         EI   R +  +I A K
Sbjct: 110 DE--------RAVEPLIKALKDEDWFVRIAAAFALG--------EIGDERAVEPLIKALK 153

Query: 459 DRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSI 514
           D    ++ + A  L  +          + +R  + +L E      R  A   +++ 
Sbjct: 154 DEDGWVRQSAADALGEI--------GGERVRAAMEKLAETGTGFARKVAVNYLETH 201

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 52.0 bits (125), Expect = 9e-08
 Identities = 38/178 (21%), Positives = 67/178 (37%), Gaps = 31/178 (17%)

Query: 22  LPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACG 81
           + PL      E+  VR  A ++L +IG +      V+   PL+K L   + +  + +A  
Sbjct: 52  VEPLIKALKDEDAWVRRAAADALGQIGDE----RAVE---PLIKALKDEDGWVRQSAAVA 104

Query: 82  LFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIF 141
           L  I    A + L   L+        D+   VR +AA  LG+         L        
Sbjct: 105 LGQIGDERAVEPLIKALK--------DEDWFVRIAAAFALGEIGDERAVEPLI------- 149

Query: 142 EDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQL 199
               +D+   VR  A +   ALG++   +     +   +   ++  +   R +  N L
Sbjct: 150 -KALKDEDGWVRQSAAD---ALGEIGGER-----VRAAMEKLAETGTGFARKVAVNYL 198

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 46.2 bits (110), Expect = 6e-06
 Identities = 35/154 (22%), Positives = 55/154 (35%), Gaps = 27/154 (17%)

Query: 22  LPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACG 81
           + PL      E+  VR  A  +L +IG +           PL+K L   +WF    +A  
Sbjct: 83  VEPLIKALKDEDGWVRQSAAVALGQIGDE-------RAVEPLIKALKDEDWFVRIAAAFA 135

Query: 82  LFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIF 141
           L  I    A + L         +  +D+   VR+SAA  LG+             + +  
Sbjct: 136 LGEIGDERAVEPLI--------KALKDEDGWVRQSAADALGEIGG--------ERVRAAM 179

Query: 142 EDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAH 175
           E L +      R +AV     L    +  +   H
Sbjct: 180 EKLAETGTGFARKVAVN---YLET-HKSFNHHHH 209

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 58.3 bits (140), Expect = 4e-09
 Identities = 75/471 (15%), Positives = 143/471 (30%), Gaps = 156/471 (33%)

Query: 127 TVEPAHLKTDIMSIFE-----DL-TQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVI 180
           T E  +   DI+S+FE     +   +D QD  +  ++     +  ++  +D V+  L + 
Sbjct: 11  TGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPK--SILSKEEIDHIIMSKDAVSGTLRLF 68

Query: 181 VNFSQDKSWRVRYMVANQL---YE-LCEAV-----GPEPTRMDLVPAYVRLLRDNEAEVR 231
                 +   V+  V   L   Y+ L   +      P       +    RL  DN+    
Sbjct: 69  WTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ---- 124

Query: 232 IAAAGKVTKF--CRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK--- 286
                   K+   R+  P L ++  L    EL    +++V      +I G+    GK   
Sbjct: 125 -----VFAKYNVSRL-QPYLKLRQAL---LEL--RPAKNV------LIDGVLG-SGKTWV 166

Query: 287 ------DATIEQLLP--IF-LSLLKDEFPDVRLNIISKL---------DQVNQVIGIDLL 328
                    ++  +   IF L+L     P+  L ++ KL          + +    I L 
Sbjct: 167 ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR 226

Query: 329 SQSLLPAIVELAEDR----------------HWRV------------------RLAIIEY 354
             S+   +  L + +                 W                     L+    
Sbjct: 227 IHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATT 286

Query: 355 IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQV 414
             +      +    D++ +L +++L  +            + L  E      +    P+ 
Sbjct: 287 THISLDHHSMTLTPDEVKSLLLKYLDCRP-----------QDLPRE------VLTTNPRR 329

Query: 415 LEMI-----NNP-------HYLY-RMTILRAISL--LAPVMGSEI-----TCSRLLPVVI 454
           L +I     +         H    ++T +   SL  L P   +E        S + P   
Sbjct: 330 LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP---AEYRKMFDRLS-VFP--- 382

Query: 455 NASKD-RVPNIKFNVAKVLQSL----IPIVDQSMVEKTIRPCLVELTEDPD 500
                  +P        +L  +    I      +V K  +  LVE  + P 
Sbjct: 383 ---PSAHIP------TILLSLIWFDVIKSDVMVVVNKLHKYSLVE--KQPK 422

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} Length = 800

 Score = 58.0 bits (139), Expect = 5e-09
 Identities = 46/354 (12%), Positives = 122/354 (34%), Gaps = 32/354 (9%)

Query: 158 EGCA-ALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLV 216
           +  A  L ++         I+  +V F     W+V++     L  L E V  +     L 
Sbjct: 246 DAAAYLLSRIYPLIG-PNDIIEQLVGFLDSGDWQVQFSGLIALGYLKEFVEDKD---GLC 301

Query: 217 PAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASV 276
              V LL   + ++++ +A  +  F    + +L ++     ++     S      +  S 
Sbjct: 302 RKLVSLLSSPDEDIKLLSAELLCHFPITDSLDLVLEKCWKNIESEELIS-----VSKTSN 356

Query: 277 IMGMAPLLGKDATIE---QLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLL 333
           +  +  +  ++  +    + L           P+VR +I++ +  +++     L+++ +L
Sbjct: 357 LSLLTKIYRENPELSIPPERLKDIFPCFTSPVPEVRTSILNMVKNLSEESIDFLVAEVVL 416

Query: 334 ----PAIVELAEDRHWRVRLAIIE-YIPLLASQLGVGFF-----DDKLGALCMQWLQDKV 383
                 I E+A  +  + R  + +  I    + +G   +     DD +    + + +  +
Sbjct: 417 IEEKDEIREMAI-KLLKKRRDLPKNLILHFMNVIGGSLYEPYSEDDFVSYEDLYFTKSGI 475

Query: 384 YSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE 443
             +        + L  E   +  +  +   +    +   ++     ++A+    P   + 
Sbjct: 476 NVVGKDEILKNRCLLFECIMKSGLPDLQSTIETTTSRT-FISLYRSVQALVKDTPYTPAN 534

Query: 444 ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTE 497
           I         +    DR  ++K    K  +  +       +   + P   + T 
Sbjct: 535 IE-------ELEYYFDRCKDLKMAPLKEFKKKLSAPGIRSIHPMVDPLYSDYTR 581

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986

 Score = 53.1 bits (127), Expect = 2e-07
 Identities = 38/211 (18%), Positives = 80/211 (37%), Gaps = 11/211 (5%)

Query: 137 IMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVA 196
           +  +F+ L+    D+   +A E  + L   +   D   H    +    +DK      M A
Sbjct: 16  LEELFQKLSVATADNRHEIASEVASFLNGNIIEHDVPEHFFGELAKGIKDKKTAANAMQA 75

Query: 197 NQLYELCEAVGP--EPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHI 254
                    + P  EP  + LVPA      + + E++  A+  +      +NP  AI+ +
Sbjct: 76  VAHIANQSNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPV-AIKAL 134

Query: 255 LPCVKELSSDSSQHVRSALASV-IMGMAPLLGKD---ATIEQLLPIFLSLLKDEFPDVRL 310
           LP +   +   +   +  +A +          KD     + +L+P+    + D   +V+ 
Sbjct: 135 LPHLTN-AIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMWDTKKEVKA 193

Query: 311 NIISKLDQVNQVIG---IDLLSQSLLPAIVE 338
              + + +  + +    I+    SL+  I +
Sbjct: 194 AATAAMTKATETVDNKDIERFIPSLIQCIAD 224

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Length = 249

 Score = 50.8 bits (121), Expect = 3e-07
 Identities = 22/196 (11%), Positives = 65/196 (33%), Gaps = 19/196 (9%)

Query: 338 ELAEDRHWRVRLAIIE--YIPLLAS----QLGVGFFDDKLGALCMQWLQDKVYSIRDAAA 391
           E      W+ R+  +E  +  +L+     +     + + LG       +D        AA
Sbjct: 23  ERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAA 82

Query: 392 NNLKRLAEEFGPEWAMQH----ITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCS 447
            +++ + ++       +     +   +L+            I +A+  +        +  
Sbjct: 83  QSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSG 142

Query: 448 RL---LPVVINASKDRVPNIKFNVAKVLQSLI------PIVDQSMVEKTIRPCLVELTED 498
           R    L  ++   K + P I+    ++  + +          Q  ++  + P ++++  D
Sbjct: 143 RNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVND 202

Query: 499 PDVDVRFFATQAIQSI 514
               +R    ++   +
Sbjct: 203 TQPAIRTIGFESFAIL 218

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Length = 249

 Score = 47.4 bits (112), Expect = 4e-06
 Identities = 27/217 (12%), Positives = 69/217 (31%), Gaps = 19/217 (8%)

Query: 166 LLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR-----MDLVPAYV 220
           +L  +  +  +            W+ R     + ++   +   +         +L+  Y 
Sbjct: 7   MLPEETILDKLPKDFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYG 66

Query: 221 RLL-RDNEAEVRIAAAGKVTKFCRILNPELAIQH----ILPCVKELSSDSSQHVRSALAS 275
            ++ +D   +    AA  V   C  L      +     +   + + + +    V  A+  
Sbjct: 67  HIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRK 126

Query: 276 VIMGMAPLLGKDA---TIEQLLPIFLSLLKDEFPDVR---LNIISK-LDQVNQVIGI--D 326
            ++ +       A     E +L   L  +K + P +R     + +  + +          
Sbjct: 127 ALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQR 186

Query: 327 LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG 363
            L   ++P ++++  D    +R    E   +L    G
Sbjct: 187 YLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFG 223

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Length = 249

 Score = 41.2 bits (96), Expect = 4e-04
 Identities = 22/181 (12%), Positives = 64/181 (35%), Gaps = 16/181 (8%)

Query: 144 LTQDDQDSVRLLAVEGCAALGKLLEPQD----CVAHILPVIVNFSQDKSWRVRYMVANQL 199
           + +D       LA +    +   L+        V+ +   +++ +++K   V   +   L
Sbjct: 69  IQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKAL 128

Query: 200 YELCEAVGPEPTRM---DLVPAYVRLLRDNEAEVRIAAAG------KVTKFCRILNPELA 250
             +C+   P  +     D++   +  ++    ++R+          K  K          
Sbjct: 129 LTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYL 188

Query: 251 IQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA---TIEQLLPIFLSLLKDEFPD 307
              ++P V ++ +D+   +R+        +  + G +    T+E L  +    +++    
Sbjct: 189 KDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHLDNLKRKKIEETVKT 248

Query: 308 V 308
           +
Sbjct: 249 L 249

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 46.9 bits (112), Expect = 1e-06
 Identities = 31/144 (21%), Positives = 50/144 (34%), Gaps = 27/144 (18%)

Query: 22  LPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACG 81
           L P  +    E   VR     +L R+G +  E        PL++ L+  +W     +A  
Sbjct: 14  LVPRGSHMADENKWVRRDVSTALSRMGDEAFE--------PLLESLSNEDWRIRGAAAWI 65

Query: 82  LFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIF 141
           + +     A + L         +L +DD   VR  AA +L +       A +        
Sbjct: 66  IGNFQDERAVEPL--------IKLLEDDSGFVRSGAARSLEQIGGERVRAAM-------- 109

Query: 142 EDLTQDDQDSVRLLAVEGCAALGK 165
           E L +      R +AV     L  
Sbjct: 110 EKLAETGTGFARKVAVN---YLET 130

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 44.6 bits (106), Expect = 7e-06
 Identities = 27/138 (19%), Positives = 52/138 (37%), Gaps = 25/138 (18%)

Query: 216 VPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALAS 275
           +      + D    VR   +  +++    +  E A + +L  +     +    +R A A+
Sbjct: 14  LVPRGSHMADENKWVRRDVSTALSR----MGDE-AFEPLLESLS----NEDWRIRGA-AA 63

Query: 276 VIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPA 335
            I+G       +  +E L+     LL+D+   VR      L+Q    IG     + +  A
Sbjct: 64  WIIGN---FQDERAVEPLIK----LLEDDSGFVRSGAARSLEQ----IG----GERVRAA 108

Query: 336 IVELAEDRHWRVRLAIIE 353
           + +LAE      R   + 
Sbjct: 109 MEKLAETGTGFARKVAVN 126

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 41.5 bits (98), Expect = 8e-05
 Identities = 23/136 (16%), Positives = 46/136 (33%), Gaps = 31/136 (22%)

Query: 185 QDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAA---GKVTKF 241
            D++  VR  V+  L  + +               +  L + +  +R AAA   G     
Sbjct: 22  ADENKWVRRDVSTALSRMGDEA---------FEPLLESLSNEDWRIRGAAAWIIGN---- 68

Query: 242 CRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLL 301
                 E A++ ++  ++    D S  VRS  A  +      +G +     +      L 
Sbjct: 69  ---FQDERAVEPLIKLLE----DDSGFVRSGAARSLEQ----IGGERVRAAMEK----LA 113

Query: 302 KDEFPDVRLNIISKLD 317
           +      R   ++ L+
Sbjct: 114 ETGTGFARKVAVNYLE 129

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 39.2 bits (92), Expect = 5e-04
 Identities = 18/103 (17%), Positives = 32/103 (31%), Gaps = 15/103 (14%)

Query: 22  LPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACG 81
             PL    + E+  +R  A   +     +      V+   PL+K L     F    +A  
Sbjct: 44  FEPLLESLSNEDWRIRGAAAWIIGNFQDE----RAVE---PLIKLLEDDSGFVRSGAARS 96

Query: 82  LFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKF 124
           L  I        ++        +L +      R+ A + L   
Sbjct: 97  LEQIGGERVRAAME--------KLAETGTGFARKVAVNYLETH 131

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 49.2 bits (117), Expect = 2e-06
 Identities = 75/542 (13%), Positives = 162/542 (29%), Gaps = 81/542 (14%)

Query: 22  LPPLETLCTVEETCVRDKAVESLCRIGSQ-------MRESDLVDWYIPLVKRLAAGEWFT 74
           +P L  L   E+  V +KA   + ++  +       MR   +V     +V+ +       
Sbjct: 16  IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVS---AIVRTMQNTNDVE 72

Query: 75  ARVSACG-LFHIAYPSAPDILKTELRSIYT--QLCQDDMPMVRRSAA---SNLGKFAATV 128
                 G L ++++     +   +   I    ++    +  V   A     NL       
Sbjct: 73  TARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGA 132

Query: 129 EPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKL-LEPQDCVAHI-----LPVIVN 182
           + A      +     L          +       L  L    Q+    I        +VN
Sbjct: 133 KMAVRLAGGLQKMVALLNKTNVKFLAIT---TDCLQILAYGNQESKLIILASGGPQALVN 189

Query: 183 FSQDKSWR-VRYMVANQLYELCEAVGPEPT--RMDLVPAYVRLLRDNEAEVRIAAAGKVT 239
             +  ++  + +  +  L  L      +P       + A    L D    +       + 
Sbjct: 190 IMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLR 249

Query: 240 KFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMA-------PLLGKDATIEQ 292
                   +  ++ +L  + +L      +V +  A ++  +         ++ +   IE 
Sbjct: 250 NLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEA 309

Query: 293 LLPIFLSLLKDEFPDVR------LNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDR-HW 345
           L+     L   +  D+       L  ++   Q  ++    +     LP +V+L     HW
Sbjct: 310 LVR--TVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHW 367

Query: 346 RVRLAIIEYIPLLAS---------QLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKR 396
            +  A +  I  LA          + G       +  L  Q L       +   +    +
Sbjct: 368 PLIKATVGLIRNLALCPANHAPLREQGA------IPRLV-QLLVRAHQDTQRRTSMGGTQ 420

Query: 397 LAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS--EITCSRLLPVVI 454
                G          +++E               A+ +LA  + +   I     +P+ +
Sbjct: 421 QQFVEGVR------MEEIVE-----------GCTGALHILARDVHNRIVIRGLNTIPLFV 463

Query: 455 NASKDRVPNIKFNVAKVLQSLIPIVD--QSMVEKTIRPCLVELTEDPDVDVRFFATQAIQ 512
                 + NI+   A VL  L    +  +++  +     L EL    +  V  +A   + 
Sbjct: 464 QLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLF 523

Query: 513 SI 514
            +
Sbjct: 524 RM 525

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 47.3 bits (112), Expect = 1e-05
 Identities = 75/535 (14%), Positives = 160/535 (29%), Gaps = 67/535 (12%)

Query: 22  LPPLETLCTVEETCVRDKAVESLCRIGSQ-------MRESDLVDWYIPLVKRLAAGEWFT 74
           +P L  L   E+  V +KA   + ++  +       MR   +V     +V+ +       
Sbjct: 152 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVS---AIVRTMQNTNDVE 208

Query: 75  ARVSACG-LFHIAYPSAPDILKTELRSIYT--QLCQDDMPMVRRSAA---SNLGKFAATV 128
                 G L ++++     +   +   I     +    +  V   A     NL       
Sbjct: 209 TARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGA 268

Query: 129 EPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKL-LEPQDCVAHI-----LPVIVN 182
           + A      +     L          +       L  L    Q+    I        +VN
Sbjct: 269 KMAVRLAGGLQKMVALLNKTNVKFLAIT---TDCLQILAYGNQESKLIILASGGPQALVN 325

Query: 183 FSQDKSWR-VRYMVANQLYELCEAVGPEPT--RMDLVPAYVRLLRDNEAEVRIAAAGKVT 239
             +  ++  + +  +  L  L      +P       + A    L D    +       + 
Sbjct: 326 IMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLR 385

Query: 240 KFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMA-------PLLGKDATIEQ 292
                   +  ++ +L  + +L      +V +  A ++  +         ++ +   IE 
Sbjct: 386 NLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEA 445

Query: 293 LLPIFLSLLKDEFPDVR------LNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDR-HW 345
           L+     L   +  D+       L  ++   Q  ++    +     LP +V+L     HW
Sbjct: 446 LVR--TVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHW 503

Query: 346 RVRLAIIEYIPLLASQLGVGFFDDKLGAL--CMQWLQDKVYSIRDAAANNLKRLAEEFGP 403
            +  A +  I  LA          + GA+   +Q L       +   +    +     G 
Sbjct: 504 PLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGV 563

Query: 404 EWAMQHITPQVLEMINNPHYLYRMTILRAISLLA--PVMGSEITCSRLLPVVINASKDRV 461
                    +++E               A+ +LA        I     +P+ +      +
Sbjct: 564 R------MEEIVE-----------ACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPI 606

Query: 462 PNIKFNVAKVLQSLIPIVD--QSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSI 514
            NI+   A VL  L    +  +++  +     L EL    +  V  +A   +  +
Sbjct: 607 ENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 661

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Length = 266

 Score = 45.9 bits (108), Expect = 1e-05
 Identities = 21/183 (11%), Positives = 53/183 (28%), Gaps = 14/183 (7%)

Query: 73  FTARVSACGLFHIAYPSAPDILKTELRSIY---TQLCQDDMPMVRRSAASNLGKFAATVE 129
           F   ++A         ++P  L +    +    T    +  P                + 
Sbjct: 60  FKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIR 119

Query: 130 PAHLKTDIMSIFEDLTQ------DDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNF 183
                     +   +        + +D++R    +    L  ++ P      + P++++ 
Sbjct: 120 DTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPL----KMTPMLLDA 175

Query: 184 SQDKSWRVRYMVANQLYELCEAVGPEPTR-MDLVPAYVRLLRDNEAEVRIAAAGKVTKFC 242
            + K+ R R      +       G  P + + +       + D +  VR AA   +    
Sbjct: 176 LKSKNARQRSECLLVIEYYITNAGISPLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACF 235

Query: 243 RIL 245
           +  
Sbjct: 236 KFE 238

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Length = 266

 Score = 42.5 bits (99), Expect = 2e-04
 Identities = 26/212 (12%), Positives = 77/212 (36%), Gaps = 17/212 (8%)

Query: 220 VRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELS---SDSSQHVRSALASV 276
           +  L   + +  +AA   + +     +P   + +    +K  +    +++      +  +
Sbjct: 52  MSQLFHKDFKQHLAALDSLVRLADT-SPRSLLSNSDLLLKWCTLRFFETNPAALIKVLEL 110

Query: 277 IMGMAPLLGK------DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQ 330
              +  L+           +   +P  L    +   ++R ++   ++ ++ V+G   ++ 
Sbjct: 111 CKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPLKMTP 170

Query: 331 SLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDD-KLGALCMQWLQDKVYSIRDA 389
            LL A+    + ++ R R   +  I    +  G+       +      ++ DK  ++R+A
Sbjct: 171 MLLDAL----KSKNARQRSECLLVIEYYITNAGISPLKSLSVEKTVAPFVGDKDVNVRNA 226

Query: 390 AANNLKRLAEEFGPEWA--MQHITPQVLEMIN 419
           A N L    +  G +       +  +   ++ 
Sbjct: 227 AINVLVACFKFEGDQMWKAAGRMADKDKSLVE 258

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Length = 462

 Score = 46.4 bits (109), Expect = 2e-05
 Identities = 50/333 (15%), Positives = 101/333 (30%), Gaps = 37/333 (11%)

Query: 107 QDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDS-----VRLLAVEGCA 161
            +    ++ S    +G     ++P  L+     I   + Q  +       V+L A     
Sbjct: 140 PNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALL 199

Query: 162 ALGKLLEPQDCVAH----ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP--EPTRMDL 215
              +  +           I+ V+   +Q    RVR      L ++        E      
Sbjct: 200 NSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPA 259

Query: 216 VPAY-VRLLRDNEAEVRIAAAGKVTKFCR------ILNPELAIQHILPCVKELSSDSSQH 268
           + A  +  ++ +  EV +      +  C       I   E A Q   P        S  +
Sbjct: 260 LFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHT-----SKFY 314

Query: 269 VRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL 328
            + AL  ++  +   L K    +           D+  +        L  +      D++
Sbjct: 315 AKGALQYLVPILTQTLTKQDENDD----------DDDWNPCKAAGVCLMLLATCCEDDIV 364

Query: 329 SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGAL---CMQWLQDKVYS 385
              +LP I E  ++  WR R A +     +            +       ++ ++D    
Sbjct: 365 -PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVV 423

Query: 386 IRDAAANNLKRLAEEFGPEWAMQHITPQVLEMI 418
           +RD AA  + R+ E              +L+ +
Sbjct: 424 VRDTAAWTVGRICELLPEAAINDVYLAPLLQCL 456

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Length = 462

 Score = 46.0 bits (108), Expect = 2e-05
 Identities = 76/459 (16%), Positives = 147/459 (32%), Gaps = 80/459 (17%)

Query: 82  LFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIF 141
           L   A  + P  L      +   L       V R AA    K + T +   +K      +
Sbjct: 25  LERAAVENLPTFLV----ELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRW 80

Query: 142 EDLTQDDQDSVRLLAVEG--------------CAALGKLLEPQDCVAHILPVIVNF--SQ 185
             +  + +  V+   ++                A +     P +    ++P +V    + 
Sbjct: 81  LAIDANARREVKNYVLQTLGTETYRPSSASQCVAGIACAEIPVNQWPELIPQLVANVTNP 140

Query: 186 DKSWRVRYMVANQLYELCEAVGPEPTRM---DLVPAYVRLLRDNEA--EVRIAAAGKVTK 240
           + +  ++      +  +C+ + PE  +    +++ A ++ +R  E    V++AA   +  
Sbjct: 141 NSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLN 200

Query: 241 FCRILNPELAIQH----ILPCVKELSSDSSQHVRSALASV---IMGMAPLLGKDATIEQL 293
                      +     I+  V E +      VR A       IM +     +      L
Sbjct: 201 SLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPAL 260

Query: 294 LPIFLSLLKDEFPDVRLNIISKLDQV-NQVIGIDLLSQSLLPAIVELAEDRHWRVRLAII 352
             I +  +K +  +V L  I     V ++ + + + +               +  + A+ 
Sbjct: 261 FAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQ 320

Query: 353 EYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITP 412
             +P+L   L     +D           D  ++   AA   L  LA     +  + H+ P
Sbjct: 321 YLVPILTQTLTKQDEND----------DDDDWNPCKAAGVCLMLLATCCE-DDIVPHVLP 369

Query: 413 QVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVL 472
            + E I NP + YR   + A   +                                    
Sbjct: 370 FIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQ---------------------------- 401

Query: 473 QSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAI 511
             L P+V Q+M      P L+EL +DP V VR  A   +
Sbjct: 402 --LKPLVIQAM------PTLIELMKDPSVVVRDTAAWTV 432

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Length = 462

 Score = 44.4 bits (104), Expect = 6e-05
 Identities = 41/258 (15%), Positives = 85/258 (32%), Gaps = 22/258 (8%)

Query: 92  DILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLT----QD 147
           +  +  +  +  +  Q     VR +A  NL K   ++   +++T +      +T    + 
Sbjct: 212 ESERHFIMQVVCEATQCPDTRVRVAALQNLVKIM-SLYYQYMETYMGPALFAITIEAMKS 270

Query: 148 DQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG 207
           D D V L  +E  + +          A          +  S   ++     L  L   + 
Sbjct: 271 DIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTS---KFYAKGALQYLVPILT 327

Query: 208 PEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQ 267
              T+ D          D++     AA   +         +  + H+LP +KE   +   
Sbjct: 328 QTLTKQDEND------DDDDWNPCKAAGVCLMLLATCC-EDDIVPHVLPFIKEHIKNPDW 380

Query: 268 HVRSALASVIMGMAPLLGKD---ATIEQLLPIFLSLLKDEFPDVR---LNIISKL-DQVN 320
             R A       +            + Q +P  + L+KD    VR      + ++ + + 
Sbjct: 381 RYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLP 440

Query: 321 QVIGIDLLSQSLLPAIVE 338
           +    D+    LL  ++E
Sbjct: 441 EAAINDVYLAPLLQCLIE 458

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Length = 462

 Score = 41.4 bits (96), Expect = 6e-04
 Identities = 41/301 (13%), Positives = 83/301 (27%), Gaps = 27/301 (8%)

Query: 16  EHAHVLLPPLETLCTVEET--CVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWF 73
           + ++ +L  +      EE    V+  A  +L       + +   +     + ++      
Sbjct: 168 DKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQ 227

Query: 74  T----ARVSACGLFHIAYPSAPDILKTELR----SIYTQLCQDDMPMVRRSAASNLGKFA 125
                 RV+A              ++T +     +I  +  + D+  V            
Sbjct: 228 CPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVC 287

Query: 126 ATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQ 185
                     D+     +  +  +            AL  L+     +   L        
Sbjct: 288 DEEM------DLAIEASEAAEQGRPPEHTSKFYAKGALQYLV---PILTQTLTKQDENDD 338

Query: 186 DKSWRVRYMVANQLYELCEAVGPE--PTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCR 243
           D  W         L  L      +  P  +  +  +   +++ +   R AA         
Sbjct: 339 DDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEH---IKNPDWRYRDAAVMAFGCILE 395

Query: 244 ILNPELA---IQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSL 300
              P      +   +P + EL  D S  VR   A  +  +  LL + A  +  L   L  
Sbjct: 396 GPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQC 455

Query: 301 L 301
           L
Sbjct: 456 L 456

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A Length = 507

 Score = 45.3 bits (106), Expect = 4e-05
 Identities = 33/268 (12%), Positives = 85/268 (31%), Gaps = 29/268 (10%)

Query: 214 DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSAL 273
             + A + L  D +  +R  A  ++ +F      E   +      + L +D S       
Sbjct: 65  SAINAQLDLCEDEDVSIRRQAIKELPQFAT---GENLPRVADILTQLLQTDDSAE----F 117

Query: 274 ASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLL 333
             V   +  +   DA  +  L    S +      VR   I  L    + +  ++L++ + 
Sbjct: 118 NLVNNALLSIFKMDA--KGTLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVLTKEVE 175

Query: 334 PAIVELAED-------RHWRVRLAIIEYIPLLASQLGVGFFDD---KLGALCMQWLQDKV 383
             I+  ++          + + + I+  +  L +  G     +   +   L   +     
Sbjct: 176 ELILTESKKVLEDVTGEEFVLFMKILSGLKSLQTVSGRQQLVELVAEQADLEQTFNPSDP 235

Query: 384 YSIRDAAANNLKRLAEEFGPEWA--------MQHITPQVLEMINNPHYL-YRMTILRAIS 434
             + D      ++    F              + + P +  +      L  ++ +L+ ++
Sbjct: 236 DCV-DRLLQCTRQAVPLFSKNVHSTRFVTYFCEQVLPNLGTLTTPVEGLDIQLEVLKLLA 294

Query: 435 LLAPVMGSEITCSRLLPVVINASKDRVP 462
            ++   G        L  + +   + +P
Sbjct: 295 EMSSFCGDMEKLETNLRKLFDKLLEYMP 322

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans} Length = 240

 Score = 43.0 bits (100), Expect = 1e-04
 Identities = 20/106 (18%), Positives = 37/106 (34%), Gaps = 4/106 (3%)

Query: 94  LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVR 153
            K  L  +  ++ +D+   V+   A    +F   +E        + I ++  +      R
Sbjct: 101 DKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK----ALPIIDEWLKSSNLHTR 156

Query: 154 LLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQL 199
             A EG          ++     +  I +  +D S  VR  V N L
Sbjct: 157 RAATEGLRIWTNRPYFKENPNEAIRRIADLKEDVSEYVRKSVGNAL 202

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score = 43.3 bits (101), Expect = 2e-04
 Identities = 44/263 (16%), Positives = 81/263 (30%), Gaps = 28/263 (10%)

Query: 104 QLCQDDMPMVRRSAASNLGKFAATVEPAHLKTD------IMSIFEDLTQDDQDSVR---L 154
           ++  +     +R A   L +   T+ P    +       I  +   L QD         L
Sbjct: 543 RMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESL 602

Query: 155 LAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELC---EAVGPEPT 211
           +A+   A++ + +  +      +  I  +  +    +    A  L  L    + +     
Sbjct: 603 MALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEG 662

Query: 212 RMDLVPAYVRLLRDNEAEVRIAAAG-------KVTKFCRILNPELAIQHILPCVKELSSD 264
             D V     L  D + E   A AG          K C  +   LAI   L  +  L ++
Sbjct: 663 NNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKI---LAIASWLDILHTLIAN 719

Query: 265 SSQHVRSALASVIMGMAPLLGK------DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQ 318
            S  V+     +I+ M     +      +  I +LL     L  D     R      L  
Sbjct: 720 PSPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAA 779

Query: 319 VNQVIGIDLLSQSLLPAIVELAE 341
             +   I+    + +P +     
Sbjct: 780 AERYRIIERSDNAEIPDVFAENS 802

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score = 41.0 bits (95), Expect = 8e-04
 Identities = 47/360 (13%), Positives = 109/360 (30%), Gaps = 38/360 (10%)

Query: 22  LPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWY--------IPLVKRLAAGEWF 73
           +  L+ L   +   +R +A+  LC++GS   +   +  +            +R       
Sbjct: 332 VDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGK 391

Query: 74  TARVSACGLFHIAYPSAPDILKTELRSIYT------QLCQDDMPMVRRSAASNLGKFAAT 127
              +       +AY +     K +L            L +           +        
Sbjct: 392 DKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNA 451

Query: 128 VEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDK 187
            E   +  +++ + +   Q   +   L  V+       +L        I   +   ++ +
Sbjct: 452 YEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVL----ANEGITTALCALAKTE 507

Query: 188 SWRVRYMVANQLYELCEAVGPEPTRMDLV-----PAYVRLLRDNEAEVRIAAAGKVTKFC 242
           S   + ++A  L  +C     +  R  +V      A +R+  +   + +  A   + +  
Sbjct: 508 SHNSQELIARVLNAVCGL---KELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIG 564

Query: 243 RILNPELAIQH------ILPCVKELSSDSSQHVRSALASVIMGMA---PLLGKDATIEQL 293
             +NPE++         I P +  L  D +          +  +A     + +    EQ 
Sbjct: 565 ITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQG 624

Query: 294 LPIFLSLLKDEFPDVRLN---IISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLA 350
           +      L ++   +       +  L     VI +   +   +  +  L ED       A
Sbjct: 625 VSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATA 684

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 42.3 bits (99), Expect = 3e-04
 Identities = 47/367 (12%), Positives = 99/367 (26%), Gaps = 46/367 (12%)

Query: 34  TCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACG-LFHIAYPSAPD 92
              R             +  + L+      V  L   +    +  +   L +IA  ++  
Sbjct: 79  QAARKLLSREKQPPIDNIIRAGLIP---KFVSFLGKTDCSPIQFESAWALTNIASGTSEQ 135

Query: 93  ---ILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMS---------- 139
              ++       +  L       +   A   LG  A   + +  +  ++           
Sbjct: 136 TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIA--GDGSAFRDLVIKHGAIDPLLAL 193

Query: 140 IFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ---DCVAHILPVIVNFSQDKSWRVRYMVA 196
           +                    + L +   P    D V  ILP +V         V     
Sbjct: 194 LAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSC 253

Query: 197 NQLYELCEAVGPEPTRM----DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP---EL 249
             +  L +    E   M     +VP  V+LL   E  +   A   +       +    ++
Sbjct: 254 WAISYLTD-GPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKV 312

Query: 250 AIQHILPCVKELSSDSSQHVRSALASVIMGMA---PLLGKDATIEQLLPIFLSLLKDEFP 306
                L     L ++   +++      +  +        +      L+P  + +L     
Sbjct: 313 IDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADF 372

Query: 307 DVRL-------NIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVR---LAIIEYIP 356
             +        N  S       V    L+   ++  ++ L   +  ++    L  I  I 
Sbjct: 373 KTQKEAAWAITNYTSGGTVEQIVY---LVHCGIIEPLMNLLSAKDTKIIQVILDAISNIF 429

Query: 357 LLASQLG 363
             A +LG
Sbjct: 430 QAAEKLG 436

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 41.5 bits (97), Expect = 4e-04
 Identities = 19/158 (12%), Positives = 46/158 (29%), Gaps = 12/158 (7%)

Query: 215 LVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE-----LAIQHILPCVKELSSDSSQHV 269
           +     R L    A +R  AA  +    +          L +  +   ++ L  D+   V
Sbjct: 83  MHLLVGRYLEAGAAGLRWRAAQLIGTCSQN-VAAIQEQVLGLGALRKLLRLLDRDACDTV 141

Query: 270 RSALASVIMGMA---PLLGKDATIEQLLPIFLSLLKDEFPDVR---LNIISKLDQVNQVI 323
           R      I  +                  + +  ++ +   ++     ++  L   +   
Sbjct: 142 RVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEH 201

Query: 324 GIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQ 361
              L S  ++  +V L    H      ++  +  L + 
Sbjct: 202 KGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTD 239

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876

 Score = 41.4 bits (96), Expect = 7e-04
 Identities = 65/439 (14%), Positives = 124/439 (28%), Gaps = 80/439 (18%)

Query: 104 QLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEG---- 159
            L       V R AA    K + T +   +K      +  +  + +  V+   +      
Sbjct: 43  VLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLHTLGTE 102

Query: 160 ----------CAALGKLLEPQDCVAHILPVIVNF--SQDKSWRVRYMVANQLYELCEAVG 207
                      A +     P +    ++P +V    + + +  ++      +  +C+ + 
Sbjct: 103 TYRPSSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDID 162

Query: 208 PEPTRMDLVPAYVRLLR-----DNEAEVRIAAAGKVTKFCRILNPELAIQH----ILPCV 258
           PE  +         +++     +    V++AA   +             +     I+  V
Sbjct: 163 PEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVV 222

Query: 259 KELSSDSSQHVRSALASV---IMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISK 315
            E +      VR A       IM +     +      L  I +  +K +  +V L     
Sbjct: 223 CEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQ---- 278

Query: 316 LDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIP-LLASQLGVGFFDDKLGAL 374
                   GI+  S      +    E      +    E+     A              L
Sbjct: 279 --------GIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTL 330

Query: 375 CMQW--LQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRA 432
             Q     D  ++   AA   L  LA     +  + H+ P + E I NP + YR   + A
Sbjct: 331 TKQDENDDDDDWNPCKAAGVCLMLLATCCEDD-IVPHVLPFIKEHIKNPDWRYRDAAVMA 389

Query: 433 ISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCL 492
              +            ++  +                                    P L
Sbjct: 390 FGCILEGPEPSQLKPLVIQAM------------------------------------PTL 413

Query: 493 VELTEDPDVDVRFFATQAI 511
           +EL +DP V VR  A   +
Sbjct: 414 IELMKDPSVVVRDTAAWTV 432

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	521
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	100.0
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	100.0
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	100.0
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	100.0
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	100.0
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	100.0
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	100.0
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	100.0
1qgr_A	876	Protein (importin beta subunit); transport recepto	100.0
1qgr_A	876	Protein (importin beta subunit); transport recepto	100.0
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	99.95
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	99.94
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	99.94
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	99.94
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	99.92
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	99.92
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	99.92
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	99.92
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	99.92
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	99.92
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	99.92
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	99.9
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	99.9
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	99.89
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	99.89
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	99.89
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	99.88
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	99.87
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	99.86
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	99.84
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	99.81
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	99.81
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	99.81
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.8
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	99.8
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	99.8
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.79
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	99.77
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	99.74
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	99.74
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.7
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	99.7
2x19_B	963	Importin-13; nuclear transport, protein transport;	99.69
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.69
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	99.69
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.68
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.68
2x1g_F	971	Cadmus; transport protein, developmental protein,	99.68
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	99.67
2x1g_F	971	Cadmus; transport protein, developmental protein,	99.66
2x19_B	963	Importin-13; nuclear transport, protein transport;	99.64
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	99.61
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.61
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	99.6
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	99.6
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	99.59
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.58
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	99.58
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	99.57
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.57
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	99.56
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	99.56
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	99.55
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.55
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	99.55
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.52
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	99.51
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	99.49
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.47
3nmz_A	458	APC variant protein; protein-protein complex, arma	99.47
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	99.46
3nmz_A	458	APC variant protein; protein-protein complex, arma	99.45
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	99.43
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	99.42
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.41
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	99.41
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	99.4
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.34
3a6p_A	1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	99.25
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	99.25
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	99.24
3gjx_A	1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	99.24
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	99.22
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	99.21
3gjx_A	1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	99.16
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	99.16
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	99.14
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.14
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	99.13
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	99.12
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	99.1
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	99.1
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	99.09
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.08
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	99.07
3a6p_A	1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	99.03
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	99.02
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	99.0
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	98.94
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	98.93
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	98.92
1vsy_5	997	Proteasome activator BLM10; 20S proteasome BLM10,	98.75
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	98.7
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	98.37
1vsy_5	997	Proteasome activator BLM10; 20S proteasome BLM10,	98.34
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	98.22
3grl_A	651	General vesicular transport factor P115; vesicle t	98.18
3grl_A	651	General vesicular transport factor P115; vesicle t	98.16
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	98.13
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	98.11
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	97.88
1lsh_A	1056	Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro	97.44
1lsh_A	1056	Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro	97.38
3o2t_A	386	Symplekin; heat repeat, scaffold, protein binding;	97.34
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	97.04
3gs3_A	257	Symplekin, LD45768P; helix-turn-helix heat repeat	96.97
3o2t_A	386	Symplekin; heat repeat, scaffold, protein binding;	96.96
3gs3_A	257	Symplekin, LD45768P; helix-turn-helix heat repeat	96.59
4atg_A	196	TAF6; transcription, TFIID; HET: NHE; 1.89A {Anton	96.58
4atg_A	196	TAF6; transcription, TFIID; HET: NHE; 1.89A {Anton	95.25
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	94.96
3ldz_A	140	STAM-1, signal transducing adapter molecule 1; ubi	94.62
2b6c_A	220	Hypothetical protein EF3068; structural genomis, D	93.48
3g2s_A	149	C-terminal fragment of sortilin-related receptor;	93.35
1x5b_A	163	Signal transducing adaptor molecule 2; VHS domain,	92.8
2b6c_A	220	Hypothetical protein EF3068; structural genomis, D	92.32
1mhq_A	148	ADP-ribosylation factor binding protein GGA2; supe	92.3
3g2s_A	149	C-terminal fragment of sortilin-related receptor;	91.98
3jxy_A	232	Alkylpurine DNA glycosylase ALKD; heat repeat, DNA	91.71
3zyq_A	226	Hepatocyte growth factor-regulated tyrosine kinas	90.55
1elk_A	157	Target of MYB1; superhelix of helices, endocytosis	90.28
3ldz_A	140	STAM-1, signal transducing adapter molecule 1; ubi	90.14
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	89.65
1x5b_A	163	Signal transducing adaptor molecule 2; VHS domain,	89.62
1juq_A	171	ADP-ribosylation factor binding protein GGA3; prot	89.58
1juq_A	171	ADP-ribosylation factor binding protein GGA3; prot	89.22
1mhq_A	148	ADP-ribosylation factor binding protein GGA2; supe	88.78
3jxy_A	232	Alkylpurine DNA glycosylase ALKD; heat repeat, DNA	88.02
3zyq_A	226	Hepatocyte growth factor-regulated tyrosine kinas	85.69
3ut4_A	134	CTHE_2751, putative uncharacterized protein; non P	85.68
1vdy_A	140	Hypothetical protein (RAFL09-17-B18); structural g	84.81
3fga_B	403	Serine/threonine-protein phosphatase 2A 56 kDa RE	83.0
2npp_B	449	PP2A, B subunit, serine/threonine-protein phosphat	82.42
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	80.82

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=100.00  E-value=1.3e-56  Score=457.12  Aligned_cols=514  Identities=58%  Similarity=0.955  Sum_probs=481.1

Q ss_pred             hhhhhccccCCCcchhHHhhhhHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHHHhHHHHHHHhhcCCCCcchhhhhh
Q 009975            2 AEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACG   81 (521)
Q Consensus         2 a~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~p~i~~~~~~~~~~~r~~~~~   81 (521)
                      ++.||.+++++|++++.+.+++.|..+.+++++.+|..|++++..++..++++.+.+.++|++.++.+++++..|..++.
T Consensus        69 ~~~L~~~~~~~~~~~~~~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~R~~a~~  148 (588)
T 1b3u_A           69 AEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACG  148 (588)
T ss_dssp             HHHHTTCSGGGTSGGGGGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGG
T ss_pred             HHHHHHHHhccCcHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence            67899999999999999999999999999999999999999999999999999888999999999999888899999999


Q ss_pred             hhhhhcCCCChHHHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCCChhHHHHHHHHHH
Q 009975           82 LFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCA  161 (521)
Q Consensus        82 ~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~  161 (521)
                      +++.++.+.++..++.+++.+..+++|+++.||..++.+++.+++..+.+...+.++|.+..+++|+++.+|..|+.+++
T Consensus       149 ~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~  228 (588)
T 1b3u_A          149 LFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACV  228 (588)
T ss_dssp             GHHHHTTTSCHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence            99999999888888999999999999999999999999999999988877777889999999999999999999999999


Q ss_pred             HHhhhcChhhhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHH
Q 009975          162 ALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKF  241 (521)
Q Consensus       162 ~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l  241 (521)
                      .++...+++...+.++|.+..+++|++|.+|..++++++.++...+++...+.++|.+.++++|+++.||.+|+.+++.+
T Consensus       229 ~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~  308 (588)
T 1b3u_A          229 NIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEF  308 (588)
T ss_dssp             HHHHHSCHHHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred             HHHHhCCHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence            99999888777788999999999999999999999999999988876655578999999999999999999999999999


Q ss_pred             HhhhCHH----HHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccChHHHHHhHHHHHHHhhcCCChHHHHHHHHHHH
Q 009975          242 CRILNPE----LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLD  317 (521)
Q Consensus       242 ~~~~~~~----~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~  317 (521)
                      +...+++    .+.+.++|.+..+++|++|.||..++.+++.++..+|++...+.++|.+..+++|++++||..++.+++
T Consensus       309 ~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~  388 (588)
T 1b3u_A          309 CENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLD  388 (588)
T ss_dssp             HHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCH
T ss_pred             HHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence            9988765    567889999999999999999999999999999999988777889999999999999999999999999


Q ss_pred             HhhhhhchhhHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChhhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH
Q 009975          318 QVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRL  397 (521)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l  397 (521)
                      .+...+|.+...+.++|.+.++.+|++|++|..++.+++.++..+|.+.+.+.++|.+..+++|+++.||.+|+.+++.+
T Consensus       389 ~l~~~~~~~~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l  468 (588)
T 1b3u_A          389 CVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKL  468 (588)
T ss_dssp             HHHHHSCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence            99998887776688999999999999999999999999999999999888888999999999999999999999999999


Q ss_pred             HHHhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChHHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHh
Q 009975          398 AEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIP  477 (521)
Q Consensus       398 ~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~  477 (521)
                      ...+|.++..+.++|.+....++++|.+|..++.+++.++..+|.+.+.+.++|.+...++|++++||..++++++.+..
T Consensus       469 ~~~~~~~~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~  548 (588)
T 1b3u_A          469 VEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGP  548 (588)
T ss_dssp             HHHHCHHHHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGG
T ss_pred             HHHhCchhHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHH
Confidence            99999988778899999999999999999999999999999999888889999999999999999999999999999999


Q ss_pred             hhchHHHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHH
Q 009975          478 IVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSID  515 (521)
Q Consensus       478 ~~~~~~~~~~~~~~l~~l~~D~~~~vr~~a~~al~~l~  515 (521)
                      .+|.+...+.+.|.+.++.+|+|++||..|.+|++++.
T Consensus       549 ~~~~~~~~~~~~p~l~~l~~d~d~~vr~~a~~al~~l~  586 (588)
T 1b3u_A          549 ILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALTVLS  586 (588)
T ss_dssp             GSCHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTT
T ss_pred             HhchhhhHHHHHHHHHHHcCCCchhHHHHHHHHHHHhh
Confidence            99988777899999999999999999999999999875

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=100.00  E-value=1.6e-48  Score=397.50  Aligned_cols=499  Identities=21%  Similarity=0.298  Sum_probs=274.8

Q ss_pred             HHhhhhHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHHHhHHHHHHHhhcCCCCcchhhhhhhhhhhcCCCChH-HHH
Q 009975           18 AHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI-LKT   96 (521)
Q Consensus        18 ~~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~p~i~~~~~~~~~~~r~~~~~~~~~~~~~~~~~-~~~   96 (521)
                      ++.++|.|.... ++++.+|..+.+.++.+++.++.......++|.+..+..+++..+|..++..++.+....++. ..+
T Consensus        47 ~~~l~~~L~~~~-d~~~~vr~~~~~~L~~~~~~~~~~~~~~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~  125 (588)
T 1b3u_A           47 RSELLPFLTDTI-YDEDEVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEA  125 (588)
T ss_dssp             HHTHHHHHHHTC-CCCHHHHHHHHHHHTTCSGGGTSGGGGGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred             HHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHHHHHH
Confidence            334444444333 334444554444444444444333333444444444444444444444444444444433332 233


Q ss_pred             HHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcChhhhhhhh
Q 009975           97 ELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHI  176 (521)
Q Consensus        97 ~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l  176 (521)
                      .+++.+..+.+++++.+|..++..++.+....+. ...+.++|.+..+++|+++.||..+++.++.+++..+++...+.+
T Consensus       126 ~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~-~~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~l  204 (588)
T 1b3u_A          126 HFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSS-AVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEI  204 (588)
T ss_dssp             THHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCH-HHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTH
T ss_pred             HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHhHHHHH
Confidence            3444444444444445555555555444443332 233445555555555555555555555555555555544444455


Q ss_pred             HHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhhhH
Q 009975          177 LPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILP  256 (521)
Q Consensus       177 ~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~  256 (521)
                      +|.+..+++|+++.||..++.+++.++...+++...+.++|.+.++++|++|.||..++.+++.++...+++.+.+.++|
T Consensus       205 ~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~  284 (588)
T 1b3u_A          205 IPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVP  284 (588)
T ss_dssp             HHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHH
T ss_pred             HHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCcccchhHHHH
Confidence            55555555555555555555555555554443333344555555555555555555555555555555555444445555


Q ss_pred             HHHHhccCCcHHHHHHHHHHHHccccccChH----HHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchhhHhhhH
Q 009975          257 CVKELSSDSSQHVRSALASVIMGMAPLLGKD----ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSL  332 (521)
Q Consensus       257 ~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~----~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~  332 (521)
                      .+.+++.|+++.||..++.+++.++..++.+    ...+.++|.+..+++|+++.||..++.+++.++..+|.+...+.+
T Consensus       285 ~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l  364 (588)
T 1b3u_A          285 AFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHL  364 (588)
T ss_dssp             HHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHHHHHHT
T ss_pred             HHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHhHHHHHH
Confidence            5555555555555555555555555554443    234455555555555555555555555555555555544433455


Q ss_pred             HHHHHHHhcCCChHHHHHHHHHhHHHHhhhChhhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHHHHHhhhHH
Q 009975          333 LPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITP  412 (521)
Q Consensus       333 ~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~  412 (521)
                      +|.+..+++|+++.||..++.+++.+.+.+|.+.+.+.++|.+..+++|++|.+|.+++.+++.+...+|.+.+.+.++|
T Consensus       365 ~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~  444 (588)
T 1b3u_A          365 LPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNS  444 (588)
T ss_dssp             HHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGCCHHHHH
T ss_pred             HHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence            55555555555556666666666655555555444455566666666666666666666666666665555444445666


Q ss_pred             HHHhhhcCcchHHHHHHHHHHHHhhcccChHHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchHHHHhhHHHHH
Q 009975          413 QVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCL  492 (521)
Q Consensus       413 ~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~~~~~~~~l  492 (521)
                      .+...++|+++.+|..++.+++.++..+|.+.+.+.++|.+..+..|+++.+|..++.+++.++..++.+.+.+.++|.+
T Consensus       445 ~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l  524 (588)
T 1b3u_A          445 LCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTV  524 (588)
T ss_dssp             HHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred             HHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            66666666666666666666666666666555555666666666666666666666666666666666665666677777


Q ss_pred             HHhcCCCCccHHHHHHHHHHHHHHhh
Q 009975          493 VELTEDPDVDVRFFATQAIQSIDHVM  518 (521)
Q Consensus       493 ~~l~~D~~~~vr~~a~~al~~l~~~~  518 (521)
                      .++++|++++||..+.++++.+.+.+
T Consensus       525 ~~~l~d~~~~Vr~~a~~~l~~l~~~~  550 (588)
T 1b3u_A          525 LRMAGDPVANVRFNVAKSLQKIGPIL  550 (588)
T ss_dssp             HHGGGCSCHHHHHHHHHHHHHHGGGS
T ss_pred             HhhCCCCCchHHHHHHHHHHHHHHHh
Confidence            77777777777777777777766543

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=100.00  E-value=1.5e-34  Score=305.96  Aligned_cols=516  Identities=18%  Similarity=0.151  Sum_probs=409.7

Q ss_pred             hhhhhccccCCCcchhHHhhhhHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHH-------HHhHHHHHHHhhcCCCCc
Q 009975            2 AEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDL-------VDWYIPLVKRLAAGEWFT   74 (521)
Q Consensus         2 a~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~-------~~~l~p~i~~~~~~~~~~   74 (521)
                      |+.++.++..- ++..++.+++.|.+.++++++.+|..++.+++.+++..++..-       .+.++|.+.+..++++..
T Consensus       111 a~~i~~ia~~~-~~~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~  189 (852)
T 4fdd_A          111 GILITTIASKG-ELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPK  189 (852)
T ss_dssp             HHHHHHHHHHT-TTTTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHH
T ss_pred             HHHHHHHHHhc-CccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHH
Confidence            45566666543 3466788999999999999999999999999999999876421       356788888888888889


Q ss_pred             chhhhhhhhhhhcCCCChH---HHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCch--hhHHHHHHHHHHhhcCCC
Q 009975           75 ARVSACGLFHIAYPSAPDI---LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPA--HLKTDIMSIFEDLTQDDQ  149 (521)
Q Consensus        75 ~r~~~~~~~~~~~~~~~~~---~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~l~~d~~  149 (521)
                      +|..++..+..+....++.   ....+++.+..+++|+++.||..++.+|+.+++..+..  .+.+.+++.+..+..|.+
T Consensus       190 vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~  269 (852)
T 4fdd_A          190 IRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQD  269 (852)
T ss_dssp             HHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTCSS
T ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccCCc
Confidence            9999988887777555543   24578888888899999999999999999999875532  234568888888999999


Q ss_pred             hhHHHHHHHHHHHHhhhcCh----hhhhhhhHHHHHHhc-----------CC-----------CChHHHHHHHHHHHHHH
Q 009975          150 DSVRLLAVEGCAALGKLLEP----QDCVAHILPVIVNFS-----------QD-----------KSWRVRYMVANQLYELC  203 (521)
Q Consensus       150 ~~vr~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~~~-----------~d-----------~~~~vR~~~~~~l~~i~  203 (521)
                      +.+|..|++.+..+++....    ......++|.+...+           .|           .+|.+|..++.+++.++
T Consensus       270 ~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la  349 (852)
T 4fdd_A          270 ENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLA  349 (852)
T ss_dssp             HHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHH
Confidence            99999999999999864211    113345777776665           34           56789999999999999


Q ss_pred             HHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHH--HHHHhhhHHHHHhccCCcHHHHHHHHHHHHccc
Q 009975          204 EAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE--LAIQHILPCVKELSSDSSQHVRSALASVIMGMA  281 (521)
Q Consensus       204 ~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~  281 (521)
                      ...+.. ..+.++|.+.+.++|++|.+|.+|+.+++.+++..+..  .+.+.++|.+...+.|+++.||..++++++.++
T Consensus       350 ~~~~~~-~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~  428 (852)
T 4fdd_A          350 NVYRDE-LLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYA  428 (852)
T ss_dssp             HHHGGG-GHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTH
T ss_pred             HhccHH-HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence            988744 34678999999999999999999999999998866532  345678899999999999999999999999998


Q ss_pred             cccCh---HHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchhh--HhhhHHHHHHHHhcCCChHHHHHHHHHhH
Q 009975          282 PLLGK---DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL--LSQSLLPAIVELAEDRHWRVRLAIIEYIP  356 (521)
Q Consensus       282 ~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~vr~~~~~~l~  356 (521)
                      ...+.   ..+...+++.+...+.|+++.||..|+.+++.+++..+...  +.+.+++.+...+++.+......++++++
T Consensus       429 ~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~~l~~~~~~~~~~~~~ai~  508 (852)
T 4fdd_A          429 HWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIG  508 (852)
T ss_dssp             HHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred             HHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhHHHHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence            76644   33466789999999999999999999999999998777542  33677777777777777777777889999


Q ss_pred             HHHhhhChh----hhHHHHHHHHH---HHcCCCcHHHHHHHHHHHHHHHHHhCHHHH--HhhhHHHHHhhhc--------
Q 009975          357 LLASQLGVG----FFDDKLGALCM---QWLQDKVYSIRDAAANNLKRLAEEFGPEWA--MQHITPQVLEMIN--------  419 (521)
Q Consensus       357 ~l~~~~~~~----~~~~~l~~~l~---~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~--~~~l~~~l~~~l~--------  419 (521)
                      .++...|..    .+.+.++|.+.   ..+.|+++.+| .++++++.++..+|..+.  ...+++.+...+.        
T Consensus       509 ~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~~~~~~-~~~~~l~~i~~~~g~~~~~~~~~i~~~~~~~l~~~l~~~~~  587 (852)
T 4fdd_A          509 TLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLF-PLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAML  587 (852)
T ss_dssp             HHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCTTCTTHH-HHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhhhhccHHHHHHHHHHHHHHHHhcccccHHHH-HHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            998877754    36677888887   45678888886 789999999998887532  3445554433321        


Q ss_pred             ---------CcchHHHHHHHHHHHHhhcccChHH--H--hhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchH--HH
Q 009975          420 ---------NPHYLYRMTILRAISLLAPVMGSEI--T--CSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--MV  484 (521)
Q Consensus       420 ---------~~~~~~r~~a~~~l~~l~~~~~~~~--~--~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~--~~  484 (521)
                               .++..+|..++.+++.++..+|...  +  .+.+++.+..++.|+.+.||..+..+++.++..++..  .+
T Consensus       588 ~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~  667 (852)
T 4fdd_A          588 NNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPC  667 (852)
T ss_dssp             HHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGTGGG
T ss_pred             hhcCCcccCCCcchHHHHHHHHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhhHHHHHH
Confidence                     2356789999999999999887543  2  2678999999999999999999999999999887754  34


Q ss_pred             HhhHHHHHHHhcCCCCccHHHHHHHHHHHHHHhhcc
Q 009975          485 EKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMMS  520 (521)
Q Consensus       485 ~~~~~~~l~~l~~D~~~~vr~~a~~al~~l~~~~~~  520 (521)
                      ...++|.+.+.+++.+.+||..|+++++.+...+++
T Consensus       668 l~~~lp~l~~~l~~~~~~v~~~a~~alg~i~~~~~~  703 (852)
T 4fdd_A          668 IADFMPILGTNLNPEFISVCNNATWAIGEISIQMGI  703 (852)
T ss_dssp             HHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHGG
T ss_pred             HHHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhH
Confidence            467899999888888999999999999999887753

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=100.00  E-value=1.4e-32  Score=292.57  Aligned_cols=517  Identities=12%  Similarity=0.112  Sum_probs=405.2

Q ss_pred             hhhhhccccCCCcchhHHhhhhHHhhhhcCc-hhHHHHHHHHHHHHHHhhcChh-----HHHHhHHHHHHHhhcCC--CC
Q 009975            2 AEELGVFIPYVGGVEHAHVLLPPLETLCTVE-ETCVRDKAVESLCRIGSQMRES-----DLVDWYIPLVKRLAAGE--WF   73 (521)
Q Consensus         2 a~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~-~~~vR~~a~~~l~~i~~~~~~~-----~~~~~l~p~i~~~~~~~--~~   73 (521)
                      |..++.++..-+....|+.+++.|.+.+.++ ++.+|..++..+..+++.++++     ...+.++|.+.....++  +.
T Consensus       116 ~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~  195 (861)
T 2bpt_A          116 AQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSK  195 (861)
T ss_dssp             HHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCH
T ss_pred             HHHHHHHHHhhCcccccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHhhcCCCCCH
Confidence            4455555554332235678889988888877 9999999999999999987654     34567777777777765  67


Q ss_pred             cchhhhhhhhhhhcCCCChH-----HHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCch--hhHH-HHHHHHHHhh
Q 009975           74 TARVSACGLFHIAYPSAPDI-----LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPA--HLKT-DIMSIFEDLT  145 (521)
Q Consensus        74 ~~r~~~~~~~~~~~~~~~~~-----~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~--~~~~-~l~~~l~~l~  145 (521)
                      .+|..++..++.+.....+.     .+..+++.+.+.+.++++.+|..++.+++.++...+..  .... .+++.+....
T Consensus       196 ~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~  275 (861)
T 2bpt_A          196 AVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATM  275 (861)
T ss_dssp             HHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88988888877654433322     24568888888889999999999999999999877642  1233 6777888888


Q ss_pred             cCCChhHHHHHHHHHHHHhhhcCh-------------------hhhhhhhHHHHHHhcC-------CCChHHHHHHHHHH
Q 009975          146 QDDQDSVRLLAVEGCAALGKLLEP-------------------QDCVAHILPVIVNFSQ-------DKSWRVRYMVANQL  199 (521)
Q Consensus       146 ~d~~~~vr~~a~~~l~~l~~~~~~-------------------~~~~~~l~~~l~~~~~-------d~~~~vR~~~~~~l  199 (521)
                      .|.++.+|..+++.+..+++....                   ......++|.+...+.       |++|.+|..+..++
T Consensus       276 ~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L  355 (861)
T 2bpt_A          276 KSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACL  355 (861)
T ss_dssp             TCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHH
T ss_pred             cCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHH
Confidence            899999999999999999876311                   1123557777776654       34689999999999


Q ss_pred             HHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHH---HHHHhhhHHHHHhccCCcHHHHHHHHHH
Q 009975          200 YELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE---LAIQHILPCVKELSSDSSQHVRSALASV  276 (521)
Q Consensus       200 ~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~~~~l~~~~~d~~~~vr~~~~~~  276 (521)
                      +.++...+... .+.+++.+.+.+.+++|.+|.+|+.+++.+++..+++   .+.+.++|.+...+.|+++.||..++++
T Consensus       356 ~~l~~~~~~~~-~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~  434 (861)
T 2bpt_A          356 QLFAQNCGNHI-LEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWC  434 (861)
T ss_dssp             HHHHHHHGGGG-HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHH
T ss_pred             HHHHHHccHhH-HHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence            99999887443 4678899999999999999999999999999876643   3456688889999999999999999999


Q ss_pred             HHccccccCh----HHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhch---h---hHhhhHHHHHHHHhc--CCC
Q 009975          277 IMGMAPLLGK----DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---D---LLSQSLLPAIVELAE--DRH  344 (521)
Q Consensus       277 l~~i~~~~~~----~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~---~---~~~~~~~~~l~~~~~--~~~  344 (521)
                      ++.++..++.    ....+.++|.+...++|+ +.||..++.++..+++.++.   +   .+.+.+++.+...+.  |.+
T Consensus       435 l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~  513 (861)
T 2bpt_A          435 IGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNE  513 (861)
T ss_dssp             HHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCG
T ss_pred             HHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcc
Confidence            9999887654    345678899999999887 99999999999999887651   2   233667777777776  445


Q ss_pred             hHHHHHHHHHhHHHHhhhChhh--hHHHHHHHHHHHcCC---------------CcHHHHHHHHHHHHHHHHHhCHHH--
Q 009975          345 WRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLQD---------------KVYSIRDAAANNLKRLAEEFGPEW--  405 (521)
Q Consensus       345 ~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d---------------~~~~vr~~a~~~l~~l~~~~~~~~--  405 (521)
                      +.+|..++++++.++...+.+.  +.+.++|.++..+.+               ....+|..++.+++.++..+|...  
T Consensus       514 ~~vr~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~  593 (861)
T 2bpt_A          514 FNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEP  593 (861)
T ss_dssp             GGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGG
T ss_pred             hHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Confidence            8999999999999999988752  345677777666542               356789999999999999887642  


Q ss_pred             HHhhhHHHHHhhhcCcch-HHHHHHHHHHHHhhcccChHH--HhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchH
Q 009975          406 AMQHITPQVLEMINNPHY-LYRMTILRAISLLAPVMGSEI--TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS  482 (521)
Q Consensus       406 ~~~~l~~~l~~~l~~~~~-~~r~~a~~~l~~l~~~~~~~~--~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~  482 (521)
                      +.+.+++.+...+++.++ .+|..++.+++.++...|...  +.+.++|.+...++++.+.+|..++.+++.++...|..
T Consensus       594 ~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~  673 (861)
T 2bpt_A          594 VADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEED  673 (861)
T ss_dssp             GHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGG
T ss_pred             HHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhchh
Confidence            346788888888888777 899999999999998777643  46789999999999999999999999999999888753


Q ss_pred             --HHHhhHHHHHHHhcCCC--CccHHHHHHHHHHHHHHhhcc
Q 009975          483 --MVEKTIRPCLVELTEDP--DVDVRFFATQAIQSIDHVMMS  520 (521)
Q Consensus       483 --~~~~~~~~~l~~l~~D~--~~~vr~~a~~al~~l~~~~~~  520 (521)
                        .+...++|.+.+.+.|+  ++++|..+..+++.+...++.
T Consensus       674 ~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~  715 (861)
T 2bpt_A          674 FRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGA  715 (861)
T ss_dssp             GHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGG
T ss_pred             ccchHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhh
Confidence              24467777777766665  489999999999999887653

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=100.00  E-value=1.4e-32  Score=302.04  Aligned_cols=501  Identities=13%  Similarity=0.105  Sum_probs=399.0

Q ss_pred             hHHhhhhHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHHHhHHHHHHHhhcCCCCcchhhhhhhhhhhcCCCChH---
Q 009975           17 HAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI---   93 (521)
Q Consensus        17 ~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~p~i~~~~~~~~~~~r~~~~~~~~~~~~~~~~~---   93 (521)
                      ....+++.+.+.+.++++.+|..|+.+++.+++.++++ ..+.+++.+.....+++..+|..++..++.+.....+.   
T Consensus        45 ~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~-~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~  123 (1230)
T 1u6g_C           45 SERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEY-QVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSG  123 (1230)
T ss_dssp             HHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHH-HHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----
T ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCHH-HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccc
Confidence            34566777777777899999999999999999988774 44678888877777777788988888887776555443   


Q ss_pred             ------HHHHHHHHHHHhcC-CCChHHHHHHHHhHHHHHHhhCch--hhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHh
Q 009975           94 ------LKTELRSIYTQLCQ-DDMPMVRRSAASNLGKFAATVEPA--HLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALG  164 (521)
Q Consensus        94 ------~~~~l~~~l~~l~~-~~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~  164 (521)
                            ..+.++|.+...+. ++++.+|..++..++.++...+..  .+.+.+++.+...+.+++..||..|+.+++.++
T Consensus       124 ~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~  203 (1230)
T 1u6g_C          124 SALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLV  203 (1230)
T ss_dssp             CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHT
T ss_pred             cchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence                  58899999999888 488999999999999999876642  356788899999999999999999999999999


Q ss_pred             hhcChhhhhhhhHHHHHHhcC-CCChHHHHHHHHHHHHHHHHhCCCc--cccchHHHHHHhcCCChHHHHHHHHHhHHHH
Q 009975          165 KLLEPQDCVAHILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGPEP--TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKF  241 (521)
Q Consensus       165 ~~~~~~~~~~~l~~~l~~~~~-d~~~~vR~~~~~~l~~i~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l  241 (521)
                      ...+++ ..+.+++.+...+. +.++.+|..++++++.++...+...  ..+.++|.+.+.+.|++++||..++.+++.+
T Consensus       204 ~~~~~~-~~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l  282 (1230)
T 1u6g_C          204 MSCGNI-VFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESF  282 (1230)
T ss_dssp             TTC-----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHH
T ss_pred             HhcCHH-HHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence            887654 34455666555443 3345788999999999998876532  2368999999999999999999999999999


Q ss_pred             HhhhCHH--HHHHhhhHHHHHhcc-------------------------------------CCcHHHHHHHHHHHHcccc
Q 009975          242 CRILNPE--LAIQHILPCVKELSS-------------------------------------DSSQHVRSALASVIMGMAP  282 (521)
Q Consensus       242 ~~~~~~~--~~~~~~~~~l~~~~~-------------------------------------d~~~~vr~~~~~~l~~i~~  282 (521)
                      +...+.+  .+.+.++|.+...+.                                     |.+|.+|.+++.++..++.
T Consensus       283 ~~~~~~~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~  362 (1230)
T 1u6g_C          283 VRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVS  362 (1230)
T ss_dssp             HHCTTCCCHHHHHHHHHHHTTCCCCC------------------------------------CTTHHHHHHHHHHHHHHT
T ss_pred             HHHChHHHHHhHHHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHH
Confidence            9987653  455667776655432                                     2357899999999999988


Q ss_pred             ccCh--HHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhch---------------------hhHhhhHHHHHHHH
Q 009975          283 LLGK--DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---------------------DLLSQSLLPAIVEL  339 (521)
Q Consensus       283 ~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~---------------------~~~~~~~~~~l~~~  339 (521)
                      ..++  ..+.+.++|.+...++|.++.||..++.++..++...+.                     +.+.+.++|.+.+.
T Consensus       363 ~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~  442 (1230)
T 1u6g_C          363 TRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQ  442 (1230)
T ss_dssp             TCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHH
T ss_pred             hchhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHH
Confidence            7765  455678899999999999999999999999988876542                     22346677777788


Q ss_pred             hcCCChHHHHHHHHHhHHHHhhhChh--hhHHHHHHHHHHHcCCCcH--HHHHHHHHHHHHHHHHhCHHH---HHhhhHH
Q 009975          340 AEDRHWRVRLAIIEYIPLLASQLGVG--FFDDKLGALCMQWLQDKVY--SIRDAAANNLKRLAEEFGPEW---AMQHITP  412 (521)
Q Consensus       340 ~~~~~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~--~vr~~a~~~l~~l~~~~~~~~---~~~~l~~  412 (521)
                      +++++|++|..++..++.++..++..  .+.+.++|.+...++|+++  .+|..++..++.+....|.+.   +.+.++|
T Consensus       443 l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp  522 (1230)
T 1u6g_C          443 MKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVP  522 (1230)
T ss_dssp             TTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHH
T ss_pred             hccCCHHHHHHHHHHHHHHHHHchhhhHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHH
Confidence            99999999999999999999886542  4567899999999999875  899999999999988777653   4578999


Q ss_pred             HHHhhhcCcchHHHHHHHHHHHHhhcccCh---------HHHhhcHHHHHHhhc--CCCCchHHHHHHHHHHHHHhhhch
Q 009975          413 QVLEMINNPHYLYRMTILRAISLLAPVMGS---------EITCSRLLPVVINAS--KDRVPNIKFNVAKVLQSLIPIVDQ  481 (521)
Q Consensus       413 ~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~---------~~~~~~il~~l~~~l--~d~~~~VR~~a~~~l~~~~~~~~~  481 (521)
                      .+...++|+++++|..++.+++.+++.+|.         ..+.+.++|.++..+  .|.++.||..++.+++.++...|.
T Consensus       523 ~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~  602 (1230)
T 1u6g_C          523 PVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGD  602 (1230)
T ss_dssp             HHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGG
T ss_pred             HHHHHHcccchHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCc
Confidence            999999999999999999999999987765         245688999999988  788999999999999999887654


Q ss_pred             HH------------------------------------------HHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHHhhc
Q 009975          482 SM------------------------------------------VEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMM  519 (521)
Q Consensus       482 ~~------------------------------------------~~~~~~~~l~~l~~D~~~~vr~~a~~al~~l~~~~~  519 (521)
                      ..                                          +...++|.+...+.|.+.++|.++..+++.+....+
T Consensus       603 ~~~~~~~~~l~~L~~~l~~e~~r~~~~~al~~i~~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~r~~a~~al~~l~~~~~  682 (1230)
T 1u6g_C          603 NLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYS  682 (1230)
T ss_dssp             GCCTHHHHHHHHHHHHTTSSSHHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHCC
T ss_pred             hhhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccc
Confidence            21                                          123455555566677899999999999999887654

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=100.00  E-value=1.3e-31  Score=283.39  Aligned_cols=500  Identities=15%  Similarity=0.133  Sum_probs=392.6

Q ss_pred             HHhhhhHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHHHhHHHHHHHhhcCCCCcchhhhhhhhhhhcCCCChH----
Q 009975           18 AHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI----   93 (521)
Q Consensus        18 ~~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~p~i~~~~~~~~~~~r~~~~~~~~~~~~~~~~~----   93 (521)
                      ...+-+.+.+.+.++++.+|..+..+++.++..-++ ..+..++|.+.+...+++..+|..++..++.++...++.    
T Consensus        88 ~~~ik~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~-~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~  166 (852)
T 4fdd_A           88 TDFIKSECLNNIGDSSPLIRATVGILITTIASKGEL-QNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSD  166 (852)
T ss_dssp             HHHHHHHHHTTTTCSSHHHHHHHHHHHHHHHHHTTT-TTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHC
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCc-cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchh
Confidence            344555666667788999999999999999987644 447889999999988877788888887777766544433    


Q ss_pred             ----HHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCch--hhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhc
Q 009975           94 ----LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPA--HLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLL  167 (521)
Q Consensus        94 ----~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~  167 (521)
                          ....+++.+.++++++++.||..|+.++..++...+..  ...+.+++.+..+.+|+++.+|..+++++..+++..
T Consensus       167 ~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~  246 (852)
T 4fdd_A          167 VLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVR  246 (852)
T ss_dssp             SSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHC
T ss_pred             hhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhC
Confidence                15678888989999999999999999998877543321  234577888888889999999999999999999876


Q ss_pred             Chh--hhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhC--C--CccccchHHHHHHhc-----------CC-----
Q 009975          168 EPQ--DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG--P--EPTRMDLVPAYVRLL-----------RD-----  225 (521)
Q Consensus       168 ~~~--~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~--~--~~~~~~l~~~l~~~l-----------~d-----  225 (521)
                      ++.  ...+.+++.+....+|.++.||..+++.+..+++...  .  ......++|.+.+.+           .|     
T Consensus       247 ~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~  326 (852)
T 4fdd_A          247 MDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGS  326 (852)
T ss_dssp             HHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------
T ss_pred             HHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCccccc
Confidence            542  2345588888899999999999999999887764210  0  112346788888776           34     


Q ss_pred             ------ChHHHHHHHHHhHHHHHhhhCHHHHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccChH--HHHHhHHHHH
Q 009975          226 ------NEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD--ATIEQLLPIF  297 (521)
Q Consensus       226 ------~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~--~~~~~l~~~l  297 (521)
                            .+|.+|.+|..+++.++...+. ...+.++|.+.+.+.+++|++|.+++.+++.++...++.  ...+.++|.+
T Consensus       327 ~~dd~~~~~~vr~~a~~~L~~la~~~~~-~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l  405 (852)
T 4fdd_A          327 GGDDTISDWNLRKCSAAALDVLANVYRD-ELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHL  405 (852)
T ss_dssp             ------CCCCHHHHHHHHHHHHHHHHGG-GGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHH
T ss_pred             ccccccccchHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence                  4567999999999999998874 456778999999999999999999999999999877652  2457789999


Q ss_pred             HHhhcCCChHHHHHHHHHHHHhhhhhchh---hHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChh--hhHHHHH
Q 009975          298 LSLLKDEFPDVRLNIISKLDQVNQVIGID---LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG--FFDDKLG  372 (521)
Q Consensus       298 ~~~l~d~~~~vr~~a~~~l~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~  372 (521)
                      ..+++|+++.||..++.+++.++..++..   .+...+++.+.+.+.|+++.+|..++.++..+++..+..  .+.+.++
T Consensus       406 ~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll  485 (852)
T 4fdd_A          406 IQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYIL  485 (852)
T ss_dssp             HHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGHHHHH
T ss_pred             HHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhHHHHHH
Confidence            99999999999999999999999876542   234678888888889999999999999999999888764  4567888


Q ss_pred             HHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHHH----HHhhhHHHHHh---hhcCcchHHHHHHHHHHHHhhcccChHH-
Q 009975          373 ALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW----AMQHITPQVLE---MINNPHYLYRMTILRAISLLAPVMGSEI-  444 (521)
Q Consensus       373 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~----~~~~l~~~l~~---~l~~~~~~~r~~a~~~l~~l~~~~~~~~-  444 (521)
                      +.+...+++.+......++.+++.++...|...    +.+.++|.+.+   .+.+++..+| .++++++.++..+|... 
T Consensus       486 ~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~~~~~~-~~~~~l~~i~~~~g~~~~  564 (852)
T 4fdd_A          486 DTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLF-PLLECLSSVATALQSGFL  564 (852)
T ss_dssp             HHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCTTCTTHH-HHHHHHHHHHHHHGGGGH
T ss_pred             HHHHHHHHHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHhcccccHHHH-HHHHHHHHHHHHHhHhHH
Confidence            888888888777777778899999987776432    45677787774   4566666666 78999999998877643 


Q ss_pred             -HhhcHHHHHHhhc-----------------CCCCchHHHHHHHHHHHHHhhhchHHH----HhhHHHHHHHhcCCCCcc
Q 009975          445 -TCSRLLPVVINAS-----------------KDRVPNIKFNVAKVLQSLIPIVDQSMV----EKTIRPCLVELTEDPDVD  502 (521)
Q Consensus       445 -~~~~il~~l~~~l-----------------~d~~~~VR~~a~~~l~~~~~~~~~~~~----~~~~~~~l~~l~~D~~~~  502 (521)
                       +.+.+++.++..+                 ..++..+|..++.+++.++..+|.+..    ...+++.+..+..|++++
T Consensus       565 ~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~  644 (852)
T 4fdd_A          565 PYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPE  644 (852)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCSSHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhCCCChh
Confidence             2344444333332                 233667999999999999999885422    256899999999999999


Q ss_pred             HHHHHHHHHHHHHHhhcc
Q 009975          503 VRFFATQAIQSIDHVMMS  520 (521)
Q Consensus       503 vr~~a~~al~~l~~~~~~  520 (521)
                      ||..+..+++.+.+.+++
T Consensus       645 vr~~a~~~l~~l~~~~~~  662 (852)
T 4fdd_A          645 VRQSSFALLGDLTKACFQ  662 (852)
T ss_dssp             HHHHHHHHHHHHHHHCGG
T ss_pred             HHHHHHHHHHHHHHHhhH
Confidence            999999999999876653

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=100.00  E-value=1e-31  Score=295.07  Aligned_cols=514  Identities=13%  Similarity=0.156  Sum_probs=387.4

Q ss_pred             hhhhhccccCCCcchhHHhhhhHHhhhhcCchhHHHHHHHHHHHHHHhhcChh--------HHHHhHHHHHHHhhc-CCC
Q 009975            2 AEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRES--------DLVDWYIPLVKRLAA-GEW   72 (521)
Q Consensus         2 a~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~--------~~~~~l~p~i~~~~~-~~~   72 (521)
                      +.+|+.++..++. ++++.+++.+...+.++++.+|..+..+++.++..++++        ..++.++|.+.+..+ +++
T Consensus        69 ~~~L~~l~~~~~~-~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~  147 (1230)
T 1u6g_C           69 VKCLGPLVSKVKE-YQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQED  147 (1230)
T ss_dssp             HHHHHHHHTTSCH-HHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSC
T ss_pred             HHHHHHHHHhCCH-HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCc
Confidence            3567888887764 677788888888888889999999999999999998875        367899999988887 467


Q ss_pred             CcchhhhhhhhhhhcC----CCChHHHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhh-cC
Q 009975           73 FTARVSACGLFHIAYP----SAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLT-QD  147 (521)
Q Consensus        73 ~~~r~~~~~~~~~~~~----~~~~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~-~d  147 (521)
                      ..+|..++..+..+..    .+.+ ....+++.+...+.++++.||..|+.+++.++...+... .+.+++.+...+ .+
T Consensus       148 ~~~~~~al~~l~~~~~~~~~~l~~-~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~-~~~~l~~l~~~L~~~  225 (1230)
T 1u6g_C          148 VSVQLEALDIMADMLSRQGGLLVN-FHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIV-FVDLIEHLLSELSKN  225 (1230)
T ss_dssp             HHHHHHHHHHHHHHHHHTCSSCTT-THHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-----CTTHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHHHHhHhHHHH-HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHhccC
Confidence            7888888877766552    2333 367889999998999999999999999999998776543 334455444444 33


Q ss_pred             CChhHHHHHHHHHHHHhhhcChh--hhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCc--cccchHHHHHHhc
Q 009975          148 DQDSVRLLAVEGCAALGKLLEPQ--DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP--TRMDLVPAYVRLL  223 (521)
Q Consensus       148 ~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~--~~~~l~~~l~~~l  223 (521)
                      ++..+|..++++++.++...++.  .+.+.++|.+...++|+++.+|..++.+++.++...+.+.  ..+.++|.+.+.+
T Consensus       226 ~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~~li~~ll~~l  305 (1230)
T 1u6g_C          226 DSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYL  305 (1230)
T ss_dssp             CSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCC
T ss_pred             CchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhHHHHHHHHHHHh
Confidence            34578888999999999887653  2346789999999999999999999999999998777653  2345666666554


Q ss_pred             C-------------------------------------CChHHHHHHHHHhHHHHHhhhCH--HHHHHhhhHHHHHhccC
Q 009975          224 R-------------------------------------DNEAEVRIAAAGKVTKFCRILNP--ELAIQHILPCVKELSSD  264 (521)
Q Consensus       224 ~-------------------------------------d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~~~~~l~~~~~d  264 (521)
                      .                                     |..|.||.+|+.++..++...+.  ..+.+.++|.+...+.|
T Consensus       306 ~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d  385 (1230)
T 1u6g_C          306 TYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKE  385 (1230)
T ss_dssp             CCC------------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSC
T ss_pred             CCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCC
Confidence            2                                     11367899999999999886654  45667788888888888


Q ss_pred             CcHHHHHHHHHHHHccccccCh---------------------HHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhh
Q 009975          265 SSQHVRSALASVIMGMAPLLGK---------------------DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI  323 (521)
Q Consensus       265 ~~~~vr~~~~~~l~~i~~~~~~---------------------~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~  323 (521)
                      +++.||..++.+++.+....+.                     ....+.++|.+.+.++|+++.+|..++..++.++...
T Consensus       386 ~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~  465 (1230)
T 1u6g_C          386 REENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVL  465 (1230)
T ss_dssp             SSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHS
T ss_pred             CchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHc
Confidence            8999999988888777654432                     1234566777777799999999999999998887764


Q ss_pred             chh--hHhhhHHHHHHHHhcCCCh--HHHHHHHHHhHHHHhhhChhh---hHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q 009975          324 GID--LLSQSLLPAIVELAEDRHW--RVRLAIIEYIPLLASQLGVGF---FDDKLGALCMQWLQDKVYSIRDAAANNLKR  396 (521)
Q Consensus       324 ~~~--~~~~~~~~~l~~~~~~~~~--~vr~~~~~~l~~l~~~~~~~~---~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~  396 (521)
                      +..  ...+.++|.+.+.++|+++  .+|..++..+..+.+..|++.   +.+.++|.++..++|+++.||..++.+++.
T Consensus       466 ~~~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~~  545 (1230)
T 1u6g_C          466 PGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQ  545 (1230)
T ss_dssp             TTTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHcccchHHHHHHHHHHHH
Confidence            321  2336788888888888775  888888888888888777764   344578888888899999998888889998


Q ss_pred             HHHHhCH---------HHHHhhhHHHHHhhh--cCcchHHHHHHHHHHHHhhcccChHH---------------------
Q 009975          397 LAEEFGP---------EWAMQHITPQVLEMI--NNPHYLYRMTILRAISLLAPVMGSEI---------------------  444 (521)
Q Consensus       397 l~~~~~~---------~~~~~~l~~~l~~~l--~~~~~~~r~~a~~~l~~l~~~~~~~~---------------------  444 (521)
                      +++.+|.         ..+.+.++|.+...+  .|.++.+|..++.+++.++...|...                     
T Consensus       546 l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~~~~~~~~~l~~L~~~l~~e~~r  625 (1230)
T 1u6g_C          546 LVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITR  625 (1230)
T ss_dssp             HHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHHHHHTTSSSHH
T ss_pred             HHHHhcCcccccccchHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCchhhhhHHHHHHHHHHHhccchhH
Confidence            8888765         234567888888877  67788899999999998887655321                     


Q ss_pred             ---------------------HhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchHHHHhhHHHHHHH---hcCCCC
Q 009975          445 ---------------------TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVE---LTEDPD  500 (521)
Q Consensus       445 ---------------------~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~~~~~~~~l~~---l~~D~~  500 (521)
                                           +.+.++|.+...+.|.++.+|.+++.+++.++...+.....+.+.|.+..   +.+|+|
T Consensus       626 ~~~~~al~~i~~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~r~~a~~al~~l~~~~~~~~~~~~v~~~l~~ll~ll~~~D  705 (1230)
T 1u6g_C          626 LTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESD  705 (1230)
T ss_dssp             HHHHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHCCTTCCHHHHHHHHTTCGGGSCTTC
T ss_pred             HHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcCcch
Confidence                                 22345556666667788899999999999999887654334556666654   467889


Q ss_pred             ccHHHHHHHHHHHHHHhh
Q 009975          501 VDVRFFATQAIQSIDHVM  518 (521)
Q Consensus       501 ~~vr~~a~~al~~l~~~~  518 (521)
                      ..++..+..++..+.+..
T Consensus       706 ~~~~~~~~~~L~~l~~~~  723 (1230)
T 1u6g_C          706 MHVSQMAISFLTTLAKVY  723 (1230)
T ss_dssp             HHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHHHHHHhC
Confidence            999998888888876543

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=100.00  E-value=3.5e-30  Score=274.04  Aligned_cols=499  Identities=15%  Similarity=0.090  Sum_probs=395.5

Q ss_pred             HhhhhHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHHHhHHHHHHHhhcCC-CCcchhhhhhhhhhhcCCCC------
Q 009975           19 HVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGE-WFTARVSACGLFHIAYPSAP------   91 (521)
Q Consensus        19 ~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~p~i~~~~~~~-~~~~r~~~~~~~~~~~~~~~------   91 (521)
                      ..+-+.+.+.+.++++.+|..+..++..++....+..-+..++|.+.+...++ +..+|..++..++.+.....      
T Consensus        94 ~~ik~~ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~  173 (861)
T 2bpt_A           94 NQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQAL  173 (861)
T ss_dssp             HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTT
T ss_pred             HHHHHHHHHHHCCCchHHHHHHHHHHHHHHHhhCcccccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHH
Confidence            34555566666778899999999999999998766545788999999988876 77788888877766654332      


Q ss_pred             hHHHHHHHHHHHHhcCCC--ChHHHHHHHHhHHHHHHhhCc----hhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhh
Q 009975           92 DILKTELRSIYTQLCQDD--MPMVRRSAASNLGKFAATVEP----AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGK  165 (521)
Q Consensus        92 ~~~~~~l~~~l~~l~~~~--~~~vr~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~  165 (521)
                      ......+++.+...+.++  ++.||..++++++.++..++.    ....+.+++.+.....++++.+|..+++++..++.
T Consensus       174 ~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~  253 (861)
T 2bpt_A          174 VSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMS  253 (861)
T ss_dssp             GGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            224778888888888887  899999999999987654332    12345688888888889999999999999999998


Q ss_pred             hcChh--hhhh-hhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhC----------------CCc---cccchHHHHHHhc
Q 009975          166 LLEPQ--DCVA-HILPVIVNFSQDKSWRVRYMVANQLYELCEAVG----------------PEP---TRMDLVPAYVRLL  223 (521)
Q Consensus       166 ~~~~~--~~~~-~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~----------------~~~---~~~~l~~~l~~~l  223 (521)
                      ..++.  .... .+++.+...+.|.+..+|..+++.+..++....                ...   ....++|.+...+
T Consensus       254 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l  333 (861)
T 2bpt_A          254 KYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLL  333 (861)
T ss_dssp             HHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHH
Confidence            76542  2334 778888888999999999999999988877531                111   1145778887777


Q ss_pred             CC-------ChHHHHHHHHHhHHHHHhhhCHHHHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccChHH---HHHhH
Q 009975          224 RD-------NEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA---TIEQL  293 (521)
Q Consensus       224 ~d-------~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~---~~~~l  293 (521)
                      .+       +++.+|.++..+++.++...+. ...+.++|.+.+.+.+.+|++|.+++.+++.++...+.+.   ..+.+
T Consensus       334 ~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~-~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~i  412 (861)
T 2bpt_A          334 TRQNEDPEDDDWNVSMSAGACLQLFAQNCGN-HILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQA  412 (861)
T ss_dssp             TCCCCC-CCCCCHHHHHHHHHHHHHHHHHGG-GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHH
T ss_pred             HhcccccccccCcHHHHHHHHHHHHHHHccH-hHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence            53       4578999999999999998874 4456788999999999999999999999999998776322   34578


Q ss_pred             HHHHHHhhcCCChHHHHHHHHHHHHhhhhhch----hhHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhCh-----
Q 009975          294 LPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI----DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV-----  364 (521)
Q Consensus       294 ~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~-----  364 (521)
                      +|.+...++|+++.||..++.+++.++..++.    ..+.+.++|.+.+.++|+ +.+|..++.++..+++.++.     
T Consensus       413 l~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~  491 (861)
T 2bpt_A          413 LPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSP  491 (861)
T ss_dssp             HHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCG
T ss_pred             HHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchh
Confidence            89999999999999999999999999988764    234578899998888886 99999999999999988762     


Q ss_pred             -hhhHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHHHHhCHHH--HHhhhHHHHHhhhcC---------------cchH
Q 009975          365 -GFFDDKLGALCMQWLQ--DKVYSIRDAAANNLKRLAEEFGPEW--AMQHITPQVLEMINN---------------PHYL  424 (521)
Q Consensus       365 -~~~~~~l~~~l~~~l~--d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~~---------------~~~~  424 (521)
                       ..+.+.+++.+...++  |.++.+|..++.+++.++...+.+.  +...++|.+.+.+.+               ....
T Consensus       492 l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~  571 (861)
T 2bpt_A          492 IYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQE  571 (861)
T ss_dssp             GGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHH
Confidence             2455778888888887  5558999999999999999887642  234566666655432               2456


Q ss_pred             HHHHHHHHHHHhhcccChH--HHhhcHHHHHHhhcCCCCc-hHHHHHHHHHHHHHhhhchH--HHHhhHHHHHHHhcCCC
Q 009975          425 YRMTILRAISLLAPVMGSE--ITCSRLLPVVINASKDRVP-NIKFNVAKVLQSLIPIVDQS--MVEKTIRPCLVELTEDP  499 (521)
Q Consensus       425 ~r~~a~~~l~~l~~~~~~~--~~~~~il~~l~~~l~d~~~-~VR~~a~~~l~~~~~~~~~~--~~~~~~~~~l~~l~~D~  499 (521)
                      +|..++.+++.++..+|..  .+.+.+++.+...+++..+ .+|..++.+++.++...+..  .+.+.++|.+.+.++++
T Consensus       572 ~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~  651 (861)
T 2bpt_A          572 LQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQV  651 (861)
T ss_dssp             HHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccc
Confidence            8899999999999888764  2456788999999988877 89999999999999887764  34577889888877899


Q ss_pred             CccHHHHHHHHHHHHHHhhc
Q 009975          500 DVDVRFFATQAIQSIDHVMM  519 (521)
Q Consensus       500 ~~~vr~~a~~al~~l~~~~~  519 (521)
                      ++++|..+..+++.+.+.++
T Consensus       652 ~~~vr~~a~~~l~~l~~~~~  671 (861)
T 2bpt_A          652 DSPVSITAVGFIADISNSLE  671 (861)
T ss_dssp             TSHHHHHHHHHHHHHHHHTG
T ss_pred             cHHHHHHHHHHHHHHHHHhc
Confidence            99999999999998887665

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=100.00  E-value=9e-31  Score=279.10  Aligned_cols=517  Identities=15%  Similarity=0.117  Sum_probs=397.1

Q ss_pred             hhhhhccccCCCcchhHHhhhhHHhhhhcCc--hhHHHHHHHHHHHHHHhhcChhHH---HHhHHHHHHHhhcCC--CCc
Q 009975            2 AEELGVFIPYVGGVEHAHVLLPPLETLCTVE--ETCVRDKAVESLCRIGSQMRESDL---VDWYIPLVKRLAAGE--WFT   74 (521)
Q Consensus         2 a~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~--~~~vR~~a~~~l~~i~~~~~~~~~---~~~l~p~i~~~~~~~--~~~   74 (521)
                      +..++.++...+...+++.+++.+.+.++++  ++.+|..++++++.+++.++++.+   ...+++.+.+...++  +..
T Consensus       110 ~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~  189 (876)
T 1qgr_A          110 SQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNN  189 (876)
T ss_dssp             HHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHH
T ss_pred             HHHHHHHHHhhCcccccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhHHhHHHHHHHHHHHhhcCCCCCHH
Confidence            3455666555443366788899998888888  899999999999999998765433   356667777766655  567


Q ss_pred             chhhhhhhhhhhcCCCChH-----HHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCch--hhHH-HHHHHHHHhhc
Q 009975           75 ARVSACGLFHIAYPSAPDI-----LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPA--HLKT-DIMSIFEDLTQ  146 (521)
Q Consensus        75 ~r~~~~~~~~~~~~~~~~~-----~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~--~~~~-~l~~~l~~l~~  146 (521)
                      +|..++..++.+....++.     ....+++.+..++.++++.+|..++++++.++...+..  .... .+++.+.....
T Consensus       190 vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~  269 (876)
T 1qgr_A          190 VKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMK  269 (876)
T ss_dssp             HHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhc
Confidence            8888888877766544322     12457888888888999999999999999999876542  2233 77888888888


Q ss_pred             CCChhHHHHHHHHHHHHhhhcCh--------------------h---hhhhhhHHHHHHhcC-------CCChHHHHHHH
Q 009975          147 DDQDSVRLLAVEGCAALGKLLEP--------------------Q---DCVAHILPVIVNFSQ-------DKSWRVRYMVA  196 (521)
Q Consensus       147 d~~~~vr~~a~~~l~~l~~~~~~--------------------~---~~~~~l~~~l~~~~~-------d~~~~vR~~~~  196 (521)
                      +.++.+|..+++.+..+++....                    .   .....++|.+...+.       |.+|.+|..++
T Consensus       270 ~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~  349 (876)
T 1qgr_A          270 SDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAG  349 (876)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHH
T ss_pred             CCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHH
Confidence            88999999999999998865310                    0   012456666666553       46789999999


Q ss_pred             HHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHH---HHHHhhhHHHHHhccCCcHHHHHHH
Q 009975          197 NQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE---LAIQHILPCVKELSSDSSQHVRSAL  273 (521)
Q Consensus       197 ~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~~~~l~~~~~d~~~~vr~~~  273 (521)
                      .+++.++...+... .+.++|.+.+.+.|++|.+|.+|+.+++.++...+++   .+.+.++|.+...+.|+++.||..+
T Consensus       350 ~~l~~l~~~~~~~~-~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a  428 (876)
T 1qgr_A          350 VCLMLLATCCEDDI-VPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTA  428 (876)
T ss_dssp             HHHHHHHHHHGGGG-HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHH
T ss_pred             HHHHHHHHHCcHhh-HHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            99999999887433 4678888899999999999999999999999877643   3456788999999999999999999


Q ss_pred             HHHHHccccccCh----HHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhc----------------hhhHhhhHH
Q 009975          274 ASVIMGMAPLLGK----DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG----------------IDLLSQSLL  333 (521)
Q Consensus       274 ~~~l~~i~~~~~~----~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~----------------~~~~~~~~~  333 (521)
                      +++++.++..++.    ....+.+++.+...+.|+ +.||..++.++..++...+                ...+.+.++
T Consensus       429 ~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il  507 (876)
T 1qgr_A          429 AWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIV  507 (876)
T ss_dssp             HHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHH
T ss_pred             HHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHH
Confidence            9999999887654    245678899999999886 9999999999999987765                112346788


Q ss_pred             HHHHHHhcCC---ChHHHHHHHHHhHHHHhhhChhh--hHHHHHHHHHHHcC-----------CCc----HHHHHHHHHH
Q 009975          334 PAIVELAEDR---HWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLQ-----------DKV----YSIRDAAANN  393 (521)
Q Consensus       334 ~~l~~~~~~~---~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~-----------d~~----~~vr~~a~~~  393 (521)
                      |.+...+.+.   ++.+|..++++++.++...|.+.  +.+.++|.+...+.           +.+    +++|..++.+
T Consensus       508 ~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~  587 (876)
T 1qgr_A          508 QKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCAT  587 (876)
T ss_dssp             HHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHH
Confidence            8888887664   57899999999999999988642  33556666665543           333    5688999999


Q ss_pred             HHHHHHHhC-HHH--HHhhhHHHHHhhhcCcc--hHHHHHHHHHHHHhhcccChHH--HhhcHHHHHHhhcCCC-CchHH
Q 009975          394 LKRLAEEFG-PEW--AMQHITPQVLEMINNPH--YLYRMTILRAISLLAPVMGSEI--TCSRLLPVVINASKDR-VPNIK  465 (521)
Q Consensus       394 l~~l~~~~~-~~~--~~~~l~~~l~~~l~~~~--~~~r~~a~~~l~~l~~~~~~~~--~~~~il~~l~~~l~d~-~~~VR  465 (521)
                      ++.++..+| ...  +...++|.+...+++++  +.+|..++.+++.++...|...  +.+.++|.+...+.+. .+.||
T Consensus       588 l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vr  667 (876)
T 1qgr_A          588 LQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVC  667 (876)
T ss_dssp             HHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCTTHHHH
T ss_pred             HHHHHHHhChhhhhHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcchHHHH
Confidence            999998888 443  34668888888887764  5789999999999998766543  4577889999999887 89999


Q ss_pred             HHHHHHHHHHHhhhchH--HHHhhHHHHHHHhcCC--CCccHHHHHHHHHHHHHHhhcc
Q 009975          466 FNVAKVLQSLIPIVDQS--MVEKTIRPCLVELTED--PDVDVRFFATQAIQSIDHVMMS  520 (521)
Q Consensus       466 ~~a~~~l~~~~~~~~~~--~~~~~~~~~l~~l~~D--~~~~vr~~a~~al~~l~~~~~~  520 (521)
                      ..++.+++.++...+..  .+...+++.+.+.+++  .+.++|..+..+++.+...++.
T Consensus       668 ~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~  726 (876)
T 1qgr_A          668 LAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGG  726 (876)
T ss_dssp             HHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGG
T ss_pred             HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhch
Confidence            99999999999887753  2346777777776554  5678999999999999886654

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=100.00  E-value=1.1e-28  Score=262.92  Aligned_cols=517  Identities=14%  Similarity=0.137  Sum_probs=373.9

Q ss_pred             hhhhccccCCCcch----hHHhhhhHHhhhhcCchhHHHHHHHHHHHHHHhhcChh---HHHHhHHHHHHHhhcCCCCcc
Q 009975            3 EELGVFIPYVGGVE----HAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRES---DLVDWYIPLVKRLAAGEWFTA   75 (521)
Q Consensus         3 ~~l~~~~~~~~~~~----~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~---~~~~~l~p~i~~~~~~~~~~~   75 (521)
                      ++++.++.+++...    ....+++.+.....+++..+|..+++++..+++..+..   .+...+++.+.....++...+
T Consensus       196 ~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v  275 (876)
T 1qgr_A          196 NALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEV  275 (876)
T ss_dssp             HHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHH
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHH
Confidence            45666666655321    11236777777778888999999999999999876532   222267777777666666677


Q ss_pred             hhhhhhhhhhhcCC---------------------CChH---HHHHHHHHHHHhcC-------CCChHHHHHHHHhHHHH
Q 009975           76 RVSACGLFHIAYPS---------------------APDI---LKTELRSIYTQLCQ-------DDMPMVRRSAASNLGKF  124 (521)
Q Consensus        76 r~~~~~~~~~~~~~---------------------~~~~---~~~~l~~~l~~l~~-------~~~~~vr~~a~~~l~~l  124 (521)
                      |..++..+..+...                     ....   ....+++.+.+.+.       ++++.+|+++..+++.+
T Consensus       276 ~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l  355 (876)
T 1qgr_A          276 ALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLL  355 (876)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHH
Confidence            77776655444321                     0111   23566776666553       45789999999999999


Q ss_pred             HHhhCchhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcChh---hhhhhhHHHHHHhcCCCChHHHHHHHHHHHH
Q 009975          125 AATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ---DCVAHILPVIVNFSQDKSWRVRYMVANQLYE  201 (521)
Q Consensus       125 ~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~  201 (521)
                      +...+ +...+.++|.+...+.|+++.+|..|+.+++.+++..+++   .....++|.+...++|+++.||..++.++++
T Consensus       356 ~~~~~-~~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~  434 (876)
T 1qgr_A          356 ATCCE-DDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGR  434 (876)
T ss_dssp             HHHHG-GGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred             HHHCc-HhhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            99887 4556788899988899999999999999999999877633   2445688888889999999999999999999


Q ss_pred             HHHHhCCC----ccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhC----------------HHHHHHhhhHHHHHh
Q 009975          202 LCEAVGPE----PTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN----------------PELAIQHILPCVKEL  261 (521)
Q Consensus       202 i~~~~~~~----~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~----------------~~~~~~~~~~~l~~~  261 (521)
                      ++...+..    .....+++.+.+.+.|+ +.||..++.++..++...+                -..+.+.++|.+...
T Consensus       435 ~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~  513 (876)
T 1qgr_A          435 ICELLPEAAINDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLET  513 (876)
T ss_dssp             HHHHCGGGTSSTTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHH
T ss_pred             HHHhCchhcccHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHH
Confidence            99876542    23457888888888886 8899999999998887643                112345566666665


Q ss_pred             ccCC---cHHH--------------------------------------------------------HHHHHHHHHcccc
Q 009975          262 SSDS---SQHV--------------------------------------------------------RSALASVIMGMAP  282 (521)
Q Consensus       262 ~~d~---~~~v--------------------------------------------------------r~~~~~~l~~i~~  282 (521)
                      +.+.   ++.+                                                        |..++.+++.++.
T Consensus       514 l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~  593 (876)
T 1qgr_A          514 TDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLR  593 (876)
T ss_dssp             TTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HhCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHH
Confidence            5432   2233                                                        4444555555555


Q ss_pred             ccC-hHH--HHHhHHHHHHHhhcCCC--hHHHHHHHHHHHHhhhhhchhh--HhhhHHHHHHHHhcCC-ChHHHHHHHHH
Q 009975          283 LLG-KDA--TIEQLLPIFLSLLKDEF--PDVRLNIISKLDQVNQVIGIDL--LSQSLLPAIVELAEDR-HWRVRLAIIEY  354 (521)
Q Consensus       283 ~~~-~~~--~~~~l~~~l~~~l~d~~--~~vr~~a~~~l~~~~~~~~~~~--~~~~~~~~l~~~~~~~-~~~vr~~~~~~  354 (521)
                      .+| ...  +...++|.+...+++..  +.+|..++.+++.++...|...  +.+.++|.+...+.+. ++.+|..++.+
T Consensus       594 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vr~~a~~~  673 (876)
T 1qgr_A          594 KVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGL  673 (876)
T ss_dssp             TSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCTTHHHHHHHHHH
T ss_pred             HhChhhhhHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcchHHHHHHHHHH
Confidence            555 321  24567778888887764  4789999999999988766432  2366788888888876 89999999999


Q ss_pred             hHHHHhhhChh--hhHHHHHHHHHHHcCC--CcHHHHHHHHHHHHHHHHHhCHHH--HHhhhHHHHHhhhcCcc------
Q 009975          355 IPLLASQLGVG--FFDDKLGALCMQWLQD--KVYSIRDAAANNLKRLAEEFGPEW--AMQHITPQVLEMINNPH------  422 (521)
Q Consensus       355 l~~l~~~~~~~--~~~~~l~~~l~~~l~d--~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~~~~------  422 (521)
                      ++.++..+|..  .+.+.+++.+...+++  .+..+|..++.+++.++..+|.++  +...++|.+...+.++.      
T Consensus       674 l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~l~~~~~~l~~~~~~~~~~~d~~  753 (876)
T 1qgr_A          674 VGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVDKSDYD  753 (876)
T ss_dssp             HHHHHHHHGGGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHTCCCCTTCHH
T ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHhccCCCCChH
Confidence            99999988764  3356788888888876  467899999999999999888763  24567777777665432      


Q ss_pred             -----hHHHHHHHHHHHHhhcccCh---------HH---HhhcHHHHHHhhcCCC--CchHHHHHHHHHHHHHhhhch-H
Q 009975          423 -----YLYRMTILRAISLLAPVMGS---------EI---TCSRLLPVVINASKDR--VPNIKFNVAKVLQSLIPIVDQ-S  482 (521)
Q Consensus       423 -----~~~r~~a~~~l~~l~~~~~~---------~~---~~~~il~~l~~~l~d~--~~~VR~~a~~~l~~~~~~~~~-~  482 (521)
                           ..+|..++.++..++..+|.         ..   +.+.+++.+.....|+  ...||..|+.+++.++...|. .
T Consensus       754 ~~~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~  833 (876)
T 1qgr_A          754 MVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDV  833 (876)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHccCcccccchHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCcHH
Confidence                 37899999999988775542         11   3355666666666777  679999999999999998876 3


Q ss_pred             H--H-HhhHHHHHHH-hcCCCCccHHHHHHHHHHHHHHhhccC
Q 009975          483 M--V-EKTIRPCLVE-LTEDPDVDVRFFATQAIQSIDHVMMSS  521 (521)
Q Consensus       483 ~--~-~~~~~~~l~~-l~~D~~~~vr~~a~~al~~l~~~~~~~  521 (521)
                      .  + .+.+++.+.+ .+.|++++||..|++|++.+.++-.+|
T Consensus       834 ~~~~~~~~~i~~ll~~~l~~~~~~~r~~a~~a~~~~~~~~~~~  876 (876)
T 1qgr_A          834 LKLVEARPMIHELLTEGRRSKTNKAKTLARWATKELRKLKNQA  876 (876)
T ss_dssp             HHHHHTSHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHhcHHHHHHHHHHhhcCCHhHHHHHHHHHHHHHHhhcCC
Confidence            2  2 3445565555 778999999999999999999876654

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=99.95  E-value=7.2e-25  Score=216.03  Aligned_cols=388  Identities=14%  Similarity=0.126  Sum_probs=296.1

Q ss_pred             HHHHHHhcCCCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcC--CChhHHHHHHHHHHHHhhhc---------
Q 009975           99 RSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQD--DQDSVRLLAVEGCAALGKLL---------  167 (521)
Q Consensus        99 ~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d--~~~~vr~~a~~~l~~l~~~~---------  167 (521)
                      ...+.. +.++++.+|+.|.+.|..+...-     .+.+.+.+...+.+  .+..+|..|...+.++...-         
T Consensus         4 ~~~L~~-~~s~d~~~r~~Ae~~L~~~~~~~-----~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~   77 (462)
T 1ibr_B            4 ITILEK-TVSPDRLELEAAQKFLERAAVEN-----LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQ   77 (462)
T ss_dssp             HHHHHH-TTCSCHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHH
T ss_pred             HHHHHH-hcCCCHHHHHHHHHHHHHHHhhC-----hHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHH
Confidence            334444 45778999999999999865421     12233333333333  36789999999999986431         


Q ss_pred             -----ChhhhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCC--hHHHHHHHHHhHHH
Q 009975          168 -----EPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDN--EAEVRIAAAGKVTK  240 (521)
Q Consensus       168 -----~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~--~~~vr~~a~~~l~~  240 (521)
                           -++.....+...+...+.++++.+ ..++.+++.++....++..+++++|.+.+.+.++  ++.+|..++.+|+.
T Consensus        78 ~~~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~  156 (462)
T 1ibr_B           78 QRWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGY  156 (462)
T ss_dssp             HHHHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHH
T ss_pred             hhhhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHHHHHHH
Confidence                 122344557777777788888888 8999999999987655445789999999999988  89999999999999


Q ss_pred             HHhhhCHH---HHHHhhhHHHHHhccCC--cHHHHHHHHHHHHccccccChHH----HHHhHHHHHHHhhcCCChHHHHH
Q 009975          241 FCRILNPE---LAIQHILPCVKELSSDS--SQHVRSALASVIMGMAPLLGKDA----TIEQLLPIFLSLLKDEFPDVRLN  311 (521)
Q Consensus       241 l~~~~~~~---~~~~~~~~~l~~~~~d~--~~~vr~~~~~~l~~i~~~~~~~~----~~~~l~~~l~~~l~d~~~~vr~~  311 (521)
                      +.+...++   .+.+.+++.+...+.|.  ++.||..++++++.+...++...    ..+.+++.+...+.++++++|..
T Consensus       157 l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~  236 (462)
T 1ibr_B          157 ICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVA  236 (462)
T ss_dssp             HHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHH
T ss_pred             HHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHH
Confidence            99866322   33456788888888888  79999999999998776554221    23456888888889999999999


Q ss_pred             HHHHHHHhhhhhchh--hHhh-hHHHHHHHHhcCCChHHHHHHHHHhHHHHhhh-------------------C-hhh--
Q 009975          312 IISKLDQVNQVIGID--LLSQ-SLLPAIVELAEDRHWRVRLAIIEYIPLLASQL-------------------G-VGF--  366 (521)
Q Consensus       312 a~~~l~~~~~~~~~~--~~~~-~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~-------------------~-~~~--  366 (521)
                      ++.++..+....+..  .... .+++.+....++.+..+|..+++.+..+++..                   . ...  
T Consensus       237 ~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (462)
T 1ibr_B          237 ALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAK  316 (462)
T ss_dssp             HHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHH
Confidence            999999998765532  1235 78888888888999999999999998887653                   0 111  


Q ss_pred             -hHHHHHHHHHHHcC-------CCcHHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhc
Q 009975          367 -FDDKLGALCMQWLQ-------DKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAP  438 (521)
Q Consensus       367 -~~~~l~~~l~~~l~-------d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~  438 (521)
                       +.+.++|.++..+.       |.++.+|.+|..+++.++..+|. .....++|.+...+++++|++|.+++.+++.++.
T Consensus       317 ~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~-~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~  395 (462)
T 1ibr_B          317 GALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED-DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILE  395 (462)
T ss_dssp             HHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT-THHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSS
T ss_pred             HHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhc
Confidence             23668888888774       34678999999999999999984 4557789999999999999999999999999998


Q ss_pred             ccChH---HHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchHH----HHhhHHHHHHH
Q 009975          439 VMGSE---ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSM----VEKTIRPCLVE  494 (521)
Q Consensus       439 ~~~~~---~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~----~~~~~~~~l~~  494 (521)
                      ..+.+   .+.+.++|.+...+.|+++.||.+|+++++.++..+++..    +.+.++|.|.+
T Consensus       396 ~~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~l~~ll~~Ll~  458 (462)
T 1ibr_B          396 GPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIE  458 (462)
T ss_dssp             SSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGGCCSTTTHHHHHHHHHC
T ss_pred             CCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHH
Confidence            65532   2457899999999999999999999999999999887632    33445554443

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=99.94  E-value=7.6e-24  Score=212.44  Aligned_cols=476  Identities=15%  Similarity=0.077  Sum_probs=316.5

Q ss_pred             hhhccccCCCcchhHHhhhhHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHHHhHHHHHHHhhcCCCCcchhhhhhhh
Q 009975            4 ELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLF   83 (521)
Q Consensus         4 ~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~p~i~~~~~~~~~~~r~~~~~~~   83 (521)
                      +++.|.+|.|++.+....++.|..+++++++.+|..|+..+..++..-+..   ..+.                      
T Consensus         1 a~~~l~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~---~~~~----------------------   55 (529)
T 1jdh_A            1 AVVNLINYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASR---HAIM----------------------   55 (529)
T ss_dssp             CCCSCC----------CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHH---HHHH----------------------
T ss_pred             ChHHHhhcCchhhhhHhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccH---HHHH----------------------
Confidence            467899999999888888999999999999999999999999998742211   0000                      


Q ss_pred             hhhcCCCChHHHHHHHHHHHHhc-CCCChHHHHHHHHhHHHHHHhhCc--hhhHHHHHHHHHHhhcCCChhHHHHHHHHH
Q 009975           84 HIAYPSAPDILKTELRSIYTQLC-QDDMPMVRRSAASNLGKFAATVEP--AHLKTDIMSIFEDLTQDDQDSVRLLAVEGC  160 (521)
Q Consensus        84 ~~~~~~~~~~~~~~l~~~l~~l~-~~~~~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l  160 (521)
                           .     ....++.+.+++ .++++.+|..++.+|..++.....  .......+|.+.+++.++++.++..|+.+|
T Consensus        56 -----~-----~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L  125 (529)
T 1jdh_A           56 -----R-----SPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTL  125 (529)
T ss_dssp             -----T-----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred             -----h-----CcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHH
Confidence                 0     011233333333 234678888888888877543211  112335677888888888888899999999


Q ss_pred             HHHhhhcChh---hhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHh---CCCccccchHHHHHHhcCCCh-HHHHHH
Q 009975          161 AALGKLLEPQ---DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAV---GPEPTRMDLVPAYVRLLRDNE-AEVRIA  233 (521)
Q Consensus       161 ~~l~~~~~~~---~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~---~~~~~~~~l~~~l~~~l~d~~-~~vr~~  233 (521)
                      ..++..-+..   ......+|.+..++.++++.+|..++.++..++..-   .........++.+.+++++.+ ..++..
T Consensus       126 ~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~  205 (529)
T 1jdh_A          126 HNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWT  205 (529)
T ss_dssp             HHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHH
T ss_pred             HHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHH
Confidence            9888763321   123457888888888889999998888888776310   001122356777777776554 455666


Q ss_pred             HHHhHHHHHhhhCHH--HHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccChHHHHHhHHHHHHHhhcCCChHHHHH
Q 009975          234 AAGKVTKFCRILNPE--LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLN  311 (521)
Q Consensus       234 a~~~l~~l~~~~~~~--~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~  311 (521)
                      +..+|..++..-...  ......++.+..++.+.+..++..+++++..++...+.......++|.+.+++.++++++|..
T Consensus       206 a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~  285 (529)
T 1jdh_A          206 TSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTC  285 (529)
T ss_dssp             HHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHH
T ss_pred             HHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHH
Confidence            777777776532221  122347888888888889999999999999887655443334578999999999999999999


Q ss_pred             HHHHHHHhhhhhc--h-hhHhhhHHHHHHHHhcC--CChHHHHHHHHHhHHHHhhhChh------hhHHHHHHHHHHHcC
Q 009975          312 IISKLDQVNQVIG--I-DLLSQSLLPAIVELAED--RHWRVRLAIIEYIPLLASQLGVG------FFDDKLGALCMQWLQ  380 (521)
Q Consensus       312 a~~~l~~~~~~~~--~-~~~~~~~~~~l~~~~~~--~~~~vr~~~~~~l~~l~~~~~~~------~~~~~l~~~l~~~l~  380 (521)
                      ++.++..++..-.  . .......+|.+.+++.+  .++.++..++.++..++...+..      ......+|.+..+++
T Consensus       286 a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~  365 (529)
T 1jdh_A          286 AAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLH  365 (529)
T ss_dssp             HHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTS
T ss_pred             HHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhc
Confidence            9999999866311  1 11224567888877754  34789999999999886543321      122235788889998


Q ss_pred             CCc-HHHHHHHHHHHHHHHHHhC--HHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHH----------------------
Q 009975          381 DKV-YSIRDAAANNLKRLAEEFG--PEWAMQHITPQVLEMINNPHYLYRMTILRAISL----------------------  435 (521)
Q Consensus       381 d~~-~~vr~~a~~~l~~l~~~~~--~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~----------------------  435 (521)
                      +++ +.+|..++.+++.+...-.  .......++|.+.+.+.++++.+|..++++++.                      
T Consensus       366 ~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~  445 (529)
T 1jdh_A          366 PPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHI  445 (529)
T ss_dssp             TTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHH
T ss_pred             cccchHHHHHHHHHHHHHhcChhhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccccHHHHHHHHHHHHHH
Confidence            876 6999999999988874211  112335678888888888877777766555443                      


Q ss_pred             hhcccC--hHHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhh--chHHHHhhHHHHHHHhcCCCCccHHHHHHHHH
Q 009975          436 LAPVMG--SEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIV--DQSMVEKTIRPCLVELTEDPDVDVRFFATQAI  511 (521)
Q Consensus       436 l~~~~~--~~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~--~~~~~~~~~~~~l~~l~~D~~~~vr~~a~~al  511 (521)
                      ++..-.  ........++.+..++.|++++||..++.+++.+...-  .........++.|.++..+++++||..|.+++
T Consensus       446 L~~~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~i~~~~~~~~L~~l~~~~~~~v~~~a~~aL  525 (529)
T 1jdh_A          446 LARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVL  525 (529)
T ss_dssp             HTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHH
T ss_pred             HhcCchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcCHHHHHHHHHcCChHHHHHHhcCCCHHHHHHHHHHH
Confidence            332100  01123456789999999999999999999999987431  11122345678899999999999999999999


Q ss_pred             HHH
Q 009975          512 QSI  514 (521)
Q Consensus       512 ~~l  514 (521)
                      ..|
T Consensus       526 ~~l  528 (529)
T 1jdh_A          526 FRM  528 (529)
T ss_dssp             HHH
T ss_pred             Hhc
Confidence            876

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=99.94  E-value=4.2e-24  Score=210.54  Aligned_cols=373  Identities=15%  Similarity=0.105  Sum_probs=236.5

Q ss_pred             hhHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHHHhHHHHHHHhhcC-CCCcchhhhhhhhhhhc-------------
Q 009975           22 LPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAG-EWFTARVSACGLFHIAY-------------   87 (521)
Q Consensus        22 ~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~p~i~~~~~~-~~~~~r~~~~~~~~~~~-------------   87 (521)
                      ..+|..+. ++|..+|+.|...|..+...- ...+...++..+.   ++ .+..+|..+..++....             
T Consensus         4 ~~~L~~~~-s~d~~~r~~Ae~~L~~~~~~~-~~~~~~~L~~il~---~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~   78 (462)
T 1ibr_B            4 ITILEKTV-SPDRLELEAAQKFLERAAVEN-LPTFLVELSRVLA---NPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQ   78 (462)
T ss_dssp             HHHHHHTT-CSCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH---CTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHH
T ss_pred             HHHHHHhc-CCCHHHHHHHHHHHHHHHhhC-hHHHHHHHHHHHH---cCCCChHHHHHHHHHHHHhccccchHHHHHHHh
Confidence            34555544 578899999999998866531 1222233333322   22 35678888887776653             


Q ss_pred             --CCCChHHHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCC--ChhHHHHHHHHHHHH
Q 009975           88 --PSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDD--QDSVRLLAVEGCAAL  163 (521)
Q Consensus        88 --~~~~~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~--~~~vr~~a~~~l~~l  163 (521)
                        ..++++.+..+...+...+.++++.+ ..++.+++.++....+...++.++|.+...++++  ++.+|..++.+++.+
T Consensus        79 ~~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l  157 (462)
T 1ibr_B           79 RWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYI  157 (462)
T ss_dssp             HHHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHH
T ss_pred             hhhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence              45677778888888888888888889 9999999999988655557899999999999888  889999999999999


Q ss_pred             hhhcChh---hhhhhhHHHHHHhcCCC--ChHHHHHHHHHHHHHHHHhCC----CccccchHHHHHHhcCCChHHHHHHH
Q 009975          164 GKLLEPQ---DCVAHILPVIVNFSQDK--SWRVRYMVANQLYELCEAVGP----EPTRMDLVPAYVRLLRDNEAEVRIAA  234 (521)
Q Consensus       164 ~~~~~~~---~~~~~l~~~l~~~~~d~--~~~vR~~~~~~l~~i~~~~~~----~~~~~~l~~~l~~~l~d~~~~vr~~a  234 (521)
                      ++...++   ...+.+++.+...++|+  ++.||..++++++.+...++.    ......+++.+.+.+.|+++.+|..+
T Consensus       158 ~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~  237 (462)
T 1ibr_B          158 CQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAA  237 (462)
T ss_dssp             HHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred             HHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence            9876432   23456888888888887  799999999999886533221    11123367777788888889999999


Q ss_pred             HHhHHHHHhhhCHH--HHHH-hhhHHHHHhccCCcHHHHHHHHHHHHccccccC--------------------h---HH
Q 009975          235 AGKVTKFCRILNPE--LAIQ-HILPCVKELSSDSSQHVRSALASVIMGMAPLLG--------------------K---DA  288 (521)
Q Consensus       235 ~~~l~~l~~~~~~~--~~~~-~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~--------------------~---~~  288 (521)
                      +.+|..++...+..  .+.. .+++.+...+.|.++.+|..+++.+..++....                    .   ..
T Consensus       238 ~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (462)
T 1ibr_B          238 LQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKG  317 (462)
T ss_dssp             HHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHH
Confidence            99999988866432  2334 667777777788889999988888777754310                    0   00


Q ss_pred             HHHhHHHHHHHhhcC-------CChHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhh
Q 009975          289 TIEQLLPIFLSLLKD-------EFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQ  361 (521)
Q Consensus       289 ~~~~l~~~l~~~l~d-------~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~  361 (521)
                      ....++|.+...+.+       +++.+|..|..+++.++..+|. ...+.++|.+.+.+++++|++|.+++.+++.++..
T Consensus       318 ~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~-~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~  396 (462)
T 1ibr_B          318 ALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED-DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEG  396 (462)
T ss_dssp             HHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT-THHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSS
T ss_pred             HhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcC
Confidence            123444544444432       1234444444444444444442 22234444444444444444554444444444443


Q ss_pred             hChh---hhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHh
Q 009975          362 LGVG---FFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEF  401 (521)
Q Consensus       362 ~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~  401 (521)
                      .+.+   .+.+.++|.+...++|+++.||.+|+.+++.++..+
T Consensus       397 ~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~  439 (462)
T 1ibr_B          397 PEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELL  439 (462)
T ss_dssp             SCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHG
T ss_pred             CcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence            3211   112334444444444444444444444444444443

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=99.94  E-value=1.6e-23  Score=211.14  Aligned_cols=470  Identities=12%  Similarity=0.115  Sum_probs=340.8

Q ss_pred             hhhHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHHHhHHHHHHHhhcCCCCcchhhhhhhhhhhcCCCChHHHHHHHH
Q 009975           21 LLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRS  100 (521)
Q Consensus        21 l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~p~i~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~  100 (521)
                      +++.+.+++++++..+|+.+.-.+..+++.- ++. ...+++.+.+-.++++..+|..|+..++.+.   .++....+.+
T Consensus        50 ~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~-~e~-~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~---~~~~~~~l~~  124 (591)
T 2vgl_B           50 LFPDVVNCMQTDNLELKKLVYLYLMNYAKSQ-PDM-AIMAVNSFVKDCEDPNPLIRALAVRTMGCIR---VDKITEYLCE  124 (591)
T ss_dssp             GHHHHHHTTSSSCHHHHHHHHHHHHHHHHHS-HHH-HHTTHHHHGGGSSSSSHHHHHHHHHHHHTCC---SGGGHHHHHH
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHcccC-chH-HHHHHHHHHHHcCCCCHHHHHHHHHHHHcCC---hHHHHHHHHH
Confidence            3444556788899999999888888877642 222 2345566666667778888988877776654   5556788899


Q ss_pred             HHHHhcCCCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcChh---hhhhhhH
Q 009975          101 IYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ---DCVAHIL  177 (521)
Q Consensus       101 ~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~l~  177 (521)
                      .+.+++.|+++.||+.|+.++..+....++......+++.+.+++.|+++.|+..|+.++..++..-++.   ......+
T Consensus       125 ~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~  204 (591)
T 2vgl_B          125 PLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNI  204 (591)
T ss_dssp             HHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHH
T ss_pred             HHHHHcCCCChHHHHHHHHHHHHHHhhChhhcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHH
Confidence            9999999999999999999999999854432223468899999999999999999999999998764321   1112234


Q ss_pred             HHHHHhcCCCChHHHHHHHHHHHHHHHHhCCC-ccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhh--CHH---HHH
Q 009975          178 PVIVNFSQDKSWRVRYMVANQLYELCEAVGPE-PTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRIL--NPE---LAI  251 (521)
Q Consensus       178 ~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~-~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~--~~~---~~~  251 (521)
                      +.+...+.+.++-.+..+.+.++.+.   +.+ .....+++.+..++++.++.|+..|+.++..+...+  +++   ...
T Consensus       205 ~~Ll~~l~~~~~~~q~~il~~l~~l~---~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~  281 (591)
T 2vgl_B          205 NKLLTALNECTEWGQIFILDCLSNYN---PKDDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLL  281 (591)
T ss_dssp             HHHHHHHHHCCHHHHHHHHHHHHTSC---CCSHHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHH
T ss_pred             HHHHHcCCCCCchHHHHHHHHHHHhC---CCChHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHH
Confidence            44444445566667777776665433   111 112468888888999999999999999999887543  221   223


Q ss_pred             HhhhHHHHHhccCCcHHHHHHHHHHHHccccccChHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchhhHhhh
Q 009975          252 QHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQS  331 (521)
Q Consensus       252 ~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~  331 (521)
                      ..+.+.+..+. ++++.+|..++.+++.+....+... ...+- .+....+|+ ..||..++..+..++..-+   . +.
T Consensus       282 ~~~~~~L~~L~-~~d~~vr~~aL~~l~~i~~~~p~~~-~~~~~-~~~~~~~d~-~~Ir~~al~~L~~l~~~~n---v-~~  353 (591)
T 2vgl_B          282 KKLAPPLVTLL-SGEPEVQYVALRNINLIVQKRPEIL-KQEIK-VFFVKYNDP-IYVKLEKLDIMIRLASQAN---I-AQ  353 (591)
T ss_dssp             HHTHHHHHHHT-TSCHHHHHHHHHHHHHHHHHCCSTT-TTCTT-TTSCCTTSC-HHHHHHHHHHHHHTCCSST---H-HH
T ss_pred             HHHHHHHHHHh-cCCccHHHHHHHHHHHHHHhChHHH-HHHHH-hheeccCCh-HHHHHHHHHHHHHHCChhh---H-HH
Confidence            45666666655 4788999999999999876443211 11111 122223444 9999999999988775422   2 56


Q ss_pred             HHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChhhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHHHHHhhhH
Q 009975          332 LLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHIT  411 (521)
Q Consensus       332 ~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~  411 (521)
                      +++.+.+++++.++.+|..++.+++.++..++..  .+..++.+..++++....++..++.++..+......  ..+.++
T Consensus       354 iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~--~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~--~~~~~v  429 (591)
T 2vgl_B          354 VLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQS--AERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPN--KYESII  429 (591)
T ss_dssp             HHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHH--HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCS--SCCTTH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhH--HHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHCcc--hHHHHH
Confidence            7888888999999999999999999999876533  467889999999999999999999999888876543  135677


Q ss_pred             HHHHhhhc-CcchHHHHHHHHHHHHhhcccChHHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchHHHHhhHHH
Q 009975          412 PQVLEMIN-NPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRP  490 (521)
Q Consensus       412 ~~l~~~l~-~~~~~~r~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~~~~~~~  490 (521)
                      +.+.+.+. ...+.+|.++++++|..+.....   .+.++..+.+.+.+.++.||..++.++.++....+.. ..+.+..
T Consensus       430 ~~L~~~l~~~~~~~~~~~~~wilGey~~~~~~---~~~~l~~l~~~~~~~~~~vr~~~l~a~~Kl~~~~p~~-~~~~i~~  505 (591)
T 2vgl_B          430 ATLCENLDSLDEPDARAAMIWIVGEYAERIDN---ADELLESFLEGFHDESTQVQLTLLTAIVKLFLKKPSE-TQELVQQ  505 (591)
T ss_dssp             HHHHHTTTTCCSHHHHHHHHHHHHTTCTTCTT---HHHHHHHHSTTCSSSCHHHHHHHHHHHHHHHTTCCST-THHHHHH
T ss_pred             HHHHHHHHhccCHHHHHHHHHHHHcccccccC---HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCchH-HHHHHHH
Confidence            88888776 45688999999999999886653   2466777777788889999999999999998765432 2244555


Q ss_pred             HHHHhcCC-CCccHHHHHHHHHHHH
Q 009975          491 CLVELTED-PDVDVRFFATQAIQSI  514 (521)
Q Consensus       491 ~l~~l~~D-~~~~vr~~a~~al~~l  514 (521)
                      .+..+..| .|.+||..|...+.-+
T Consensus       506 ll~~~~~d~~d~evrdRA~~y~~ll  530 (591)
T 2vgl_B          506 VLSLATQDSDNPDLRDRGYIYWRLL  530 (591)
T ss_dssp             HHHHHHTTCCCHHHHHHHHHHHTTT
T ss_pred             HHHHhhhcCCChHHHHHHHHHHHHH
Confidence            56665566 7889999998876544

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=99.92  E-value=1.7e-22  Score=209.55  Aligned_cols=489  Identities=14%  Similarity=0.069  Sum_probs=341.5

Q ss_pred             HHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHHHhHHHHHHHhhcCCCCcchhhhhhhhhhhcCCCChH--H--HHHHH
Q 009975           24 PLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI--L--KTELR   99 (521)
Q Consensus        24 ~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~p~i~~~~~~~~~~~r~~~~~~~~~~~~~~~~~--~--~~~l~   99 (521)
                      .+.+.+.+++..+|..+.+.+.....    ..+....+|.+..++.+++..+|..++..+..+....+..  .  ...++
T Consensus       119 ~lv~~L~~~~~~~r~~a~~~l~~~~~----~~i~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i  194 (780)
T 2z6g_A          119 TNVQRLAEPSQMLKHAVVNLINYQDD----AELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMV  194 (780)
T ss_dssp             -------CCSCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHH
T ss_pred             HHHHHhcCccHHHHHHHHHHHHhhhH----HHHHhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccChH
Confidence            34444456677888888887765422    2334567777777777777788988888887777543211  0  13466


Q ss_pred             HHHHHhcC-CCChHHHHHHHHhHHHHHHhhCc--hhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcChh--h-hh
Q 009975          100 SIYTQLCQ-DDMPMVRRSAASNLGKFAATVEP--AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ--D-CV  173 (521)
Q Consensus       100 ~~l~~l~~-~~~~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~--~-~~  173 (521)
                      +.+.+++. ++++.+|..|+.+|..++..-..  .......+|.+..++.++++.+|..|+.+|..++......  . ..
T Consensus       195 ~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~  274 (780)
T 2z6g_A          195 SAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRL  274 (780)
T ss_dssp             HHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHH
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHH
Confidence            66666554 45899999999999998754221  1233467889999999999999999999999998764321  1 23


Q ss_pred             hhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHh---CCCccccchHHHHHHhcCCChH-HHHHHHHHhHHHHHhhhCHH-
Q 009975          174 AHILPVIVNFSQDKSWRVRYMVANQLYELCEAV---GPEPTRMDLVPAYVRLLRDNEA-EVRIAAAGKVTKFCRILNPE-  248 (521)
Q Consensus       174 ~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~---~~~~~~~~l~~~l~~~l~d~~~-~vr~~a~~~l~~l~~~~~~~-  248 (521)
                      ...+|.+..++.++++.++..++.++..++...   .........++.+.+++++.+. .++..+..++..++..-... 
T Consensus       275 ~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~  354 (780)
T 2z6g_A          275 AGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKP  354 (780)
T ss_dssp             TTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHH
T ss_pred             cCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHH
Confidence            568899999999999999999999888666310   0011224568888888887654 45567777787777532221 


Q ss_pred             -HHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccChHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhch--
Q 009975          249 -LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI--  325 (521)
Q Consensus       249 -~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~--  325 (521)
                       ......++.+..++.+.+..++..++.++..++...........++|.+..++++.++++|..|+.+|..+...-..  
T Consensus       355 ~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~  434 (780)
T 2z6g_A          355 AIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNK  434 (780)
T ss_dssp             HHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHH
T ss_pred             HHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence             22334678899999999999999999999998765544333457899999999999999999999999998763211  


Q ss_pred             -hhHhhhHHHHHHHHhcC-CCh-HHHHHHHHHhHHHHhhhChh------hhHHHHHHHHHHHcCCCc-HHHHHHHHHHHH
Q 009975          326 -DLLSQSLLPAIVELAED-RHW-RVRLAIIEYIPLLASQLGVG------FFDDKLGALCMQWLQDKV-YSIRDAAANNLK  395 (521)
Q Consensus       326 -~~~~~~~~~~l~~~~~~-~~~-~vr~~~~~~l~~l~~~~~~~------~~~~~l~~~l~~~l~d~~-~~vr~~a~~~l~  395 (521)
                       .......++.+.+++.+ .++ .+|..++.+|+.++...+..      ......+|.+..++.+++ +.+|..++.+|+
T Consensus       435 ~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~  514 (780)
T 2z6g_A          435 MMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIR  514 (780)
T ss_dssp             HHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHH
Confidence             11224567888887765 343 89999999999886543321      112345788899998876 499999999999


Q ss_pred             HHHHHhC--HHHHHhhhHHHHHhhhcCcch----------------------HHHHHHHHHHHHhhcccCh--HHHhhcH
Q 009975          396 RLAEEFG--PEWAMQHITPQVLEMINNPHY----------------------LYRMTILRAISLLAPVMGS--EITCSRL  449 (521)
Q Consensus       396 ~l~~~~~--~~~~~~~l~~~l~~~l~~~~~----------------------~~r~~a~~~l~~l~~~~~~--~~~~~~i  449 (521)
                      .+...-.  .......++|.|.+++.+.++                      .++..++.+++.++..-..  .......
T Consensus       515 nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~  594 (780)
T 2z6g_A          515 NLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNT  594 (780)
T ss_dssp             HHHSSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSHHHHHHHHHTCC
T ss_pred             HHhcCHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcChhhHHHHHHCCc
Confidence            9974211  111234577888777765443                      3566777777777631111  1123567


Q ss_pred             HHHHHhhcCCCCchHHHHHHHHHHHHHhhhch-H-HHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 009975          450 LPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ-S-MVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDH  516 (521)
Q Consensus       450 l~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~-~-~~~~~~~~~l~~l~~D~~~~vr~~a~~al~~l~~  516 (521)
                      +|.+..++.++++.||..++.+|..+...-.. . ......++.|.+++.+++.+||..|.+++..+.+
T Consensus       595 i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~  663 (780)
T 2z6g_A          595 IPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSE  663 (780)
T ss_dssp             HHHHHHGGGCSCHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence            89999999999999999999999998743111 1 1223467888999999999999999999998875

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=99.92  E-value=6e-22  Score=202.45  Aligned_cols=474  Identities=15%  Similarity=0.092  Sum_probs=324.9

Q ss_pred             cccCCCcchhHHhhhhHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHHHhHHHHHHHhhcCCCCcchhhhhhhhhhhc
Q 009975            8 FIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAY   87 (521)
Q Consensus         8 ~~~~~~~~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~p~i~~~~~~~~~~~r~~~~~~~~~~~   87 (521)
                      |.+|.++..+....++.|..+++++++.+|..|+.+|..++..-.....   +                          .
T Consensus         2 l~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~---i--------------------------~   52 (644)
T 2z6h_A            2 LINYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHA---I--------------------------M   52 (644)
T ss_dssp             ----------CTTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHH---H--------------------------T
T ss_pred             cccccchhhhhhchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHH---H--------------------------H
Confidence            5677777777667889999999999999999999999999886432110   0                          0


Q ss_pred             CCCChHHHHHHHHHHHHhc-CCCChHHHHHHHHhHHHHHHhhCc--hhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHh
Q 009975           88 PSAPDILKTELRSIYTQLC-QDDMPMVRRSAASNLGKFAATVEP--AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALG  164 (521)
Q Consensus        88 ~~~~~~~~~~l~~~l~~l~-~~~~~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~  164 (521)
                       .     ....++.+.+.+ .++++.+|..++.+|..++.....  .......+|.+..+++++++.++..|+.+|..++
T Consensus        53 -~-----~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~  126 (644)
T 2z6h_A           53 -R-----SPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLL  126 (644)
T ss_dssp             -T-----CHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred             -h-----ccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence             0     012233333333 334677888888888776643211  1123356788888888888899999999999988


Q ss_pred             hhcChh---hhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhC---CCccccchHHHHHHhcCCCh-HHHHHHHHHh
Q 009975          165 KLLEPQ---DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG---PEPTRMDLVPAYVRLLRDNE-AEVRIAAAGK  237 (521)
Q Consensus       165 ~~~~~~---~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~---~~~~~~~l~~~l~~~l~d~~-~~vr~~a~~~  237 (521)
                      ..-...   ......+|.+..++.++++.++..++.++..++...+   ........++.+.+++++.+ ..++..+..+
T Consensus       127 ~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~  206 (644)
T 2z6h_A          127 LHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRV  206 (644)
T ss_dssp             HHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred             hCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHH
Confidence            764321   1235578889999988888898888888887774110   01123456888888887654 5677888888


Q ss_pred             HHHHHhhhCHH-H-HHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccChHHHHHhHHHHHHHhhcCCChHHHHHHHHH
Q 009975          238 VTKFCRILNPE-L-AIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISK  315 (521)
Q Consensus       238 l~~l~~~~~~~-~-~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~  315 (521)
                      |..++..-... . .....++.+..++.+.+..++..++.++..++...........++|.+..++.+.++++|..++.+
T Consensus       207 L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~a  286 (644)
T 2z6h_A          207 LKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGI  286 (644)
T ss_dssp             HHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred             HHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHH
Confidence            88877533221 1 223468888889999999999999999999986544433345789999999999999999999999


Q ss_pred             HHHhhhhhc---hhhHhhhHHHHHHHHhcCC--ChHHHHHHHHHhHHHHhhhChh------hhHHHHHHHHHHHcCCCc-
Q 009975          316 LDQVNQVIG---IDLLSQSLLPAIVELAEDR--HWRVRLAIIEYIPLLASQLGVG------FFDDKLGALCMQWLQDKV-  383 (521)
Q Consensus       316 l~~~~~~~~---~~~~~~~~~~~l~~~~~~~--~~~vr~~~~~~l~~l~~~~~~~------~~~~~l~~~l~~~l~d~~-  383 (521)
                      |..+...-.   ........++.+.+++.+.  .+.+|..++.+++.++...+..      ......+|.+..++++++ 
T Consensus       287 L~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~  366 (644)
T 2z6h_A          287 LSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSH  366 (644)
T ss_dssp             HHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCC
T ss_pred             HHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCc
Confidence            999876321   1112245688888877653  3799999999999987543321      122346888999998875 


Q ss_pred             HHHHHHHHHHHHHHHHHhC--HHHHHhhhHHHHHhhhcCcch----------------------HHHHHHHHHHHHhhcc
Q 009975          384 YSIRDAAANNLKRLAEEFG--PEWAMQHITPQVLEMINNPHY----------------------LYRMTILRAISLLAPV  439 (521)
Q Consensus       384 ~~vr~~a~~~l~~l~~~~~--~~~~~~~l~~~l~~~l~~~~~----------------------~~r~~a~~~l~~l~~~  439 (521)
                      +.+|..++.+++.+...-.  .......++|.|.+.+.+.++                      .++..++.++..++..
T Consensus       367 ~~v~~~a~~~L~nLa~~~~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~  446 (644)
T 2z6h_A          367 WPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARD  446 (644)
T ss_dssp             HHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTTS
T ss_pred             hHHHHHHHHHHHHHccCHHHHHHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcC
Confidence            7999999999998864211  112345677888777766443                      4555666777766642


Q ss_pred             cChH--HHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchH--HHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHH
Q 009975          440 MGSE--ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--MVEKTIRPCLVELTEDPDVDVRFFATQAIQSID  515 (521)
Q Consensus       440 ~~~~--~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~--~~~~~~~~~l~~l~~D~~~~vr~~a~~al~~l~  515 (521)
                      -...  ......+|.+..++.++++.||..++.+|..+...-...  ......++.|.++..+++++||..|.+++..+.
T Consensus       447 ~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~i~~~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~  526 (644)
T 2z6h_A          447 VHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS  526 (644)
T ss_dssp             HHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCHHHHHHHHHcCChhHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence            2111  123467899999999999999999999999987531111  112345788899999999999999999999886


Q ss_pred             H
Q 009975          516 H  516 (521)
Q Consensus       516 ~  516 (521)
                      +
T Consensus       527 ~  527 (644)
T 2z6h_A          527 E  527 (644)
T ss_dssp             T
T ss_pred             c
Confidence            5

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=99.92  E-value=4.4e-22  Score=201.04  Aligned_cols=481  Identities=14%  Similarity=0.134  Sum_probs=356.9

Q ss_pred             hhHHHHHHHHHHHHHHhhcChh----HHHHhHHHHHHHhhcCCCCcchhhhhhhhhhhcCCCChHH-----HHHHHHHHH
Q 009975           33 ETCVRDKAVESLCRIGSQMRES----DLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDIL-----KTELRSIYT  103 (521)
Q Consensus        33 ~~~vR~~a~~~l~~i~~~~~~~----~~~~~l~p~i~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~-----~~~l~~~l~  103 (521)
                      .++.|..+.-++..+.+.+..+    ...+.+-.++...........+..+...+..+++..++..     ....++.+.
T Consensus       217 ~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~li  296 (810)
T 3now_A          217 TGSSSTIASVCLARIYENMYYDEAKARFTDQIDEYIKDKLLAPDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMIL  296 (810)
T ss_dssp             CTTHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHSSSHHHHHHHHHTTTHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhccCChHhHHHHHHHHHHHhcCCHHHHHHHHhccchHHHHH
Confidence            4578999999999999998853    3444555666666655555556777777778887665541     234678888


Q ss_pred             HhcCCCChHHHHHHHHhHHHHHHhhCc-hh-hHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcCh--------hhhh
Q 009975          104 QLCQDDMPMVRRSAASNLGKFAATVEP-AH-LKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP--------QDCV  173 (521)
Q Consensus       104 ~l~~~~~~~vr~~a~~~l~~l~~~~~~-~~-~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~--------~~~~  173 (521)
                      .+++++++.++..|..+++..+..-.. +. ....+ |.+..++.++++.+|..|...|..++.....        +...
T Consensus       297 ~Ll~s~~~~~q~~A~~al~~aa~~~~~R~~I~~~gv-~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i  375 (810)
T 3now_A          297 AMATTDDELQQRVACECLIAASSKKDKAKALCEQGV-DILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAA  375 (810)
T ss_dssp             HHHHSSCHHHHHHHHHHHHHHTTSHHHHHTTHHHHH-HHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHH
T ss_pred             HHhCCCCHHHHHHHHHHHHHHcCCcHHHHHHHHcCc-HHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccH
Confidence            999999999999999999997654221 12 23344 9999999988889999999999999753221        1223


Q ss_pred             hhhHHHHHHhcCCC--ChHHHHHHHHHHHHHHHHhC--CCcc-ccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhC--
Q 009975          174 AHILPVIVNFSQDK--SWRVRYMVANQLYELCEAVG--PEPT-RMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN--  246 (521)
Q Consensus       174 ~~l~~~l~~~~~d~--~~~vR~~~~~~l~~i~~~~~--~~~~-~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~--  246 (521)
                      ..+.+.+.+++.++  ++++|..++++|..++....  .... ...++|.++++++.++..++..|..+|+.+....+  
T Consensus       376 ~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q  455 (810)
T 3now_A          376 LKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQ  455 (810)
T ss_dssp             HHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCC
T ss_pred             HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhh
Confidence            45788888887776  88999999999998863211  1111 24689999999998889999999999999987431  


Q ss_pred             ---------------------------------HHHHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccCh--HHHHH
Q 009975          247 ---------------------------------PELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK--DATIE  291 (521)
Q Consensus       247 ---------------------------------~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~--~~~~~  291 (521)
                                                       ...+..-.+|.+.+++.++++.+|..++++++.++..-..  .....
T Consensus       456 ~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~  535 (810)
T 3now_A          456 EMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQE  535 (810)
T ss_dssp             CCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHHHT
T ss_pred             hhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHC
Confidence                                             0011223689999999999999999999999999843211  11234


Q ss_pred             hHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchhhH-----hhhHHHHHHHHhcCC-ChHHHHHHHHHhHHHHhhhCh-
Q 009975          292 QLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL-----SQSLLPAIVELAEDR-HWRVRLAIIEYIPLLASQLGV-  364 (521)
Q Consensus       292 ~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~-----~~~~~~~l~~~~~~~-~~~vr~~~~~~l~~l~~~~~~-  364 (521)
                      ..+|.++.++.+.++.+|..|+.+|..++....++..     ....+|.|.+++.+. +...+..++.+|..++..-.. 
T Consensus       536 Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~  615 (810)
T 3now_A          536 GGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESV  615 (810)
T ss_dssp             THHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred             CCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHH
Confidence            5789999999999999999999999998765443321     134788888888654 334456788888888764211 


Q ss_pred             --hhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHHH---HH--hhhHHHHHhhhcCcchHHHHHHHHHHHHhh
Q 009975          365 --GFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW---AM--QHITPQVLEMINNPHYLYRMTILRAISLLA  437 (521)
Q Consensus       365 --~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~---~~--~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~  437 (521)
                        .......+|.+..++.+.+..||.+|+.+++.++.  +.+.   +.  ...++.|..++.+++..+|..|+++++.+.
T Consensus       616 ~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~--~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt  693 (810)
T 3now_A          616 RQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVM--SEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIIT  693 (810)
T ss_dssp             HHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTT--SHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhC--ChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHh
Confidence              12233468888999999999999999999999874  2221   12  357889999999999999999999999998


Q ss_pred             cccC---hHHHh-hcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhc---hHHHHhhHHHHHHHhcCCC---CccHHHHH
Q 009975          438 PVMG---SEITC-SRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD---QSMVEKTIRPCLVELTEDP---DVDVRFFA  507 (521)
Q Consensus       438 ~~~~---~~~~~-~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~---~~~~~~~~~~~l~~l~~D~---~~~vr~~a  507 (521)
                      ....   ...+. ...+|.+..++.+++..+|..|++++..+...-+   ......-.+|.|.+++.++   +.+++..|
T Consensus       694 ~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~A  773 (810)
T 3now_A          694 SVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVA  773 (810)
T ss_dssp             HHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHH
T ss_pred             CCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHH
Confidence            7321   12234 5789999999999999999999999999987422   1223366789999987654   78999999


Q ss_pred             HHHHHHHHH
Q 009975          508 TQAIQSIDH  516 (521)
Q Consensus       508 ~~al~~l~~  516 (521)
                      .++++.+.+
T Consensus       774 l~aL~~ll~  782 (810)
T 3now_A          774 TQCLAAAER  782 (810)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999998865

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=99.92  E-value=1.7e-22  Score=198.29  Aligned_cols=378  Identities=13%  Similarity=0.076  Sum_probs=279.9

Q ss_pred             HHHHHHhhcCCChhHHHHHHHHHHHHhhhc-Ch--h-hhhh-hhHHHHHHhcCCC-ChHHHHHHHHHHHHHHHHhC---C
Q 009975          138 MSIFEDLTQDDQDSVRLLAVEGCAALGKLL-EP--Q-DCVA-HILPVIVNFSQDK-SWRVRYMVANQLYELCEAVG---P  208 (521)
Q Consensus       138 ~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~-~~--~-~~~~-~l~~~l~~~~~d~-~~~vR~~~~~~l~~i~~~~~---~  208 (521)
                      ++.+.+.++++++.+|..|+..+..+.... .+  + .... .++|.+..+++++ ++.+|..++.++..++..-.   .
T Consensus        22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~  101 (450)
T 2jdq_A           22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTR  101 (450)
T ss_dssp             CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence            455555666677777777777777765421 11  1 1223 5788888877777 78899999888888764110   1


Q ss_pred             CccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCH--H-HHHHhhhHHHHHhccC-CcHHHHHHHHHHHHcccccc
Q 009975          209 EPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP--E-LAIQHILPCVKELSSD-SSQHVRSALASVIMGMAPLL  284 (521)
Q Consensus       209 ~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~--~-~~~~~~~~~l~~~~~d-~~~~vr~~~~~~l~~i~~~~  284 (521)
                      .......+|.+.++++++++.+|..|+.+|+.++...+.  . .....++|.+..++.+ .++.+|..++++++.++...
T Consensus       102 ~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~  181 (450)
T 2jdq_A          102 IVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGK  181 (450)
T ss_dssp             HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCS
T ss_pred             HHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCC
Confidence            112256899999999999999999999999998875321  1 1223578888888874 78999999999999988543


Q ss_pred             C---hHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhch---hhHhhhHHHHHHHHhcCCChHHHHHHHHHhHHH
Q 009975          285 G---KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLL  358 (521)
Q Consensus       285 ~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l  358 (521)
                      +   .......++|.+..++.+.++.+|..++.++..++.....   ......++|.+.+++.++++.+|..++.+++.+
T Consensus       182 ~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l  261 (450)
T 2jdq_A          182 SPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNI  261 (450)
T ss_dssp             SSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHH
Confidence            1   1223467899999999999999999999999998764221   112246789999999999999999999999988


Q ss_pred             HhhhChh---hhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCH---HHHHhhhHHHHHhhhcCcchHHHHHHHHH
Q 009975          359 ASQLGVG---FFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP---EWAMQHITPQVLEMINNPHYLYRMTILRA  432 (521)
Q Consensus       359 ~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~~~~~~~r~~a~~~  432 (521)
                      +...+..   .....++|.+..+++++++.+|..|+.+++.++.....   ......++|.+...+.++++.+|..++++
T Consensus       262 ~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~  341 (450)
T 2jdq_A          262 VTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWA  341 (450)
T ss_dssp             TTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred             hhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHH
Confidence            7653321   12235789999999999999999999999998742111   11235788999999999999999999999


Q ss_pred             HHHhhcccChHH----HhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchH---------HHHhhH-----HHHHHH
Q 009975          433 ISLLAPVMGSEI----TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS---------MVEKTI-----RPCLVE  494 (521)
Q Consensus       433 l~~l~~~~~~~~----~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~---------~~~~~~-----~~~l~~  494 (521)
                      ++.++.....+.    +...++|.++.+++++++.||..++.+|..++...+..         .+...+     ++.+..
T Consensus       342 L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~  421 (450)
T 2jdq_A          342 ITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEF  421 (450)
T ss_dssp             HHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHH
T ss_pred             HHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHH
Confidence            999987544332    23568999999999999999999999999998754321         122333     567788


Q ss_pred             hcCCCCccHHHHHHHHHHHHH
Q 009975          495 LTEDPDVDVRFFATQAIQSID  515 (521)
Q Consensus       495 l~~D~~~~vr~~a~~al~~l~  515 (521)
                      +..+++.+|+..|..++.++-
T Consensus       422 l~~~~~~~v~~~a~~~l~~~~  442 (450)
T 2jdq_A          422 LQSHENQEIYQKAFDLIEHYF  442 (450)
T ss_dssp             HHCHHHHHHHHHHHHHHHHHH
T ss_pred             HHcCCCHHHHHHHHHHHHHHC
Confidence            888999999999988887653

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=99.92  E-value=2.5e-22  Score=202.32  Aligned_cols=471  Identities=15%  Similarity=0.122  Sum_probs=332.7

Q ss_pred             hhHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHHHhHHHHHHHhhcCCCCcchhhhhhhhhhhcCCCChHHHHHHHHH
Q 009975           22 LPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSI  101 (521)
Q Consensus        22 ~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~p~i~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~~  101 (521)
                      +.-+.+.+.+++...|..++..+..+ ...|.+  .+.+.+.+.++++++++..|..+...+....+.. ++....+.+.
T Consensus        15 ~~~i~~~L~~~~~~~k~~~~~kli~~-~~~G~d--~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~-~e~~~l~~n~   90 (591)
T 2vgl_B           15 IFELKAELNNEKKEKRKEAVKKVIAA-MTVGKD--VSSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQ-PDMAIMAVNS   90 (591)
T ss_dssp             HHHHHHHTTSSCHHHHHHHHHHHHHH-HHTTCC--CGGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHS-HHHHHTTHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHH-HHCCCC--hHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccC-chHHHHHHHH
Confidence            34456666677777777766655533 223432  1345566667788888888866655555544322 2323445667


Q ss_pred             HHHhcCCCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcChhhhhhhhHHHHH
Q 009975          102 YTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIV  181 (521)
Q Consensus       102 l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~  181 (521)
                      +.+-++|+++.+|..|+.+++.+.    .+...+.+.|.+.+++.|+++.||..|+.++..+....++......+++.+.
T Consensus        91 l~kdL~~~n~~ir~~AL~~L~~i~----~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~  166 (591)
T 2vgl_B           91 FVKDCEDPNPLIRALAVRTMGCIR----VDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLR  166 (591)
T ss_dssp             HGGGSSSSSHHHHHHHHHHHHTCC----SGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHH
T ss_pred             HHHHcCCCCHHHHHHHHHHHHcCC----hHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhcccccHHHHHH
Confidence            777788999999999988887764    4567788899999999999999999999999999985433212235889999


Q ss_pred             HhcCCCChHHHHHHHHHHHHHHHHhCCC-c--cccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhhhHHH
Q 009975          182 NFSQDKSWRVRYMVANQLYELCEAVGPE-P--TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCV  258 (521)
Q Consensus       182 ~~~~d~~~~vR~~~~~~l~~i~~~~~~~-~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l  258 (521)
                      .+++|+++.||..++.+++.++..-++. .  .....++.+.+.+.+.++..+...++.+..+...  .......+++.+
T Consensus       167 ~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~--~~~~~~~~l~~l  244 (591)
T 2vgl_B          167 DLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPK--DDREAQSICERV  244 (591)
T ss_dssp             HTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCC--SHHHHHHHHHHH
T ss_pred             HHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCC--ChHHHHHHHHHH
Confidence            9999999999999999999887543222 0  1123455566666677777777777766554321  122345678888


Q ss_pred             HHhccCCcHHHHHHHHHHHHcccccc--ChHH---HHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchhhHhhhHH
Q 009975          259 KELSSDSSQHVRSALASVIMGMAPLL--GKDA---TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLL  333 (521)
Q Consensus       259 ~~~~~d~~~~vr~~~~~~l~~i~~~~--~~~~---~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~  333 (521)
                      ..++++.++.|+..++.++..+....  +.+.   ....+.+.+..++ ++++++|..++.++..+....+ +.+... +
T Consensus       245 ~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L~-~~d~~vr~~aL~~l~~i~~~~p-~~~~~~-~  321 (591)
T 2vgl_B          245 TPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLL-SGEPEVQYVALRNINLIVQKRP-EILKQE-I  321 (591)
T ss_dssp             TTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHHHT-TSCHHHHHHHHHHHHHHHHHCC-STTTTC-T
T ss_pred             HHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHh-cCCccHHHHHHHHHHHHHHhCh-HHHHHH-H
Confidence            88899999999999999999987654  2221   2345666666655 4789999999999999987532 222111 1


Q ss_pred             HHHHHHhcCCChHHHHHHHHHhHHHHhhhChhhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHHHHHhhhHHH
Q 009975          334 PAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQ  413 (521)
Q Consensus       334 ~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~  413 (521)
                      ..+....+|+ +.+|..+++.+..++..-+    .+.+++.+..++++.++++|..++.+++.++..+...  .+..++.
T Consensus       322 ~~~~~~~~d~-~~Ir~~al~~L~~l~~~~n----v~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~--~~~~v~~  394 (591)
T 2vgl_B          322 KVFFVKYNDP-IYVKLEKLDIMIRLASQAN----IAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQS--AERCVST  394 (591)
T ss_dssp             TTTSCCTTSC-HHHHHHHHHHHHHTCCSST----HHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHH--HHHHHHH
T ss_pred             HhheeccCCh-HHHHHHHHHHHHHHCChhh----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhH--HHHHHHH
Confidence            1121112344 8999999888776653322    3457888889999999999999999999998776432  4567888


Q ss_pred             HHhhhcCcchHHHHHHHHHHHHhhcccChHHHhhcHHHHHHhhcC-CCCchHHHHHHHHHHHHHhhhchHHHHhhHHHHH
Q 009975          414 VLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASK-DRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCL  492 (521)
Q Consensus       414 l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~-d~~~~VR~~a~~~l~~~~~~~~~~~~~~~~~~~l  492 (521)
                      +.+++.+....++..++.++..+....+..  .+.+++.+...+. +..+.+|..+++++|+.+.....   ...++..+
T Consensus       395 Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~~--~~~~v~~L~~~l~~~~~~~~~~~~~wilGey~~~~~~---~~~~l~~l  469 (591)
T 2vgl_B          395 LLDLIQTKVNYVVQEAIVVIRDIFRKYPNK--YESIIATLCENLDSLDEPDARAAMIWIVGEYAERIDN---ADELLESF  469 (591)
T ss_dssp             HHHHHHTCCHHHHHHHHHHHHHHHHHSCSS--CCTTHHHHHHTTTTCCSHHHHHHHHHHHHTTCTTCTT---HHHHHHHH
T ss_pred             HHHHHcccchHHHHHHHHHHHHHHHHCcch--HHHHHHHHHHHHHhccCHHHHHHHHHHHHcccccccC---HHHHHHHH
Confidence            999999988889998899999988654432  3567778888776 46788999999999998876543   23445555


Q ss_pred             HHhcCCCCccHHHHHHHHHHHHHHh
Q 009975          493 VELTEDPDVDVRFFATQAIQSIDHV  517 (521)
Q Consensus       493 ~~l~~D~~~~vr~~a~~al~~l~~~  517 (521)
                      .+-..+.++.||..+..|+.++...
T Consensus       470 ~~~~~~~~~~vr~~~l~a~~Kl~~~  494 (591)
T 2vgl_B          470 LEGFHDESTQVQLTLLTAIVKLFLK  494 (591)
T ss_dssp             STTCSSSCHHHHHHHHHHHHHHHTT
T ss_pred             HHhhccCCHHHHHHHHHHHHHHHhc
Confidence            5445577889999999998887654

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=99.92  E-value=4e-22  Score=199.35  Aligned_cols=378  Identities=10%  Similarity=0.057  Sum_probs=289.4

Q ss_pred             HHHHHHhhcCCChhHHHHHHHHHHHHhhhcCh----hhhhhhhHHHHHHhcCCC-ChHHHHHHHHHHHHHHHHh---CCC
Q 009975          138 MSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP----QDCVAHILPVIVNFSQDK-SWRVRYMVANQLYELCEAV---GPE  209 (521)
Q Consensus       138 ~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~~~~d~-~~~vR~~~~~~l~~i~~~~---~~~  209 (521)
                      ++.+...+.++++.+|..|+..+..++..-..    ......++|.+..++.++ ++.+|..++.+++.++...   ...
T Consensus        89 i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~  168 (530)
T 1wa5_B           89 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKV  168 (530)
T ss_dssp             HHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHH
Confidence            55566666777788888888888888654321    122345889999999886 8999999999998887421   111


Q ss_pred             ccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCH--H-HHHHhhhHHHHHhccCCcHHHHHHHHHHHHcccccc--
Q 009975          210 PTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP--E-LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLL--  284 (521)
Q Consensus       210 ~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~--~-~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~--  284 (521)
                      ......+|.+.++++++++.+|..|+.+|+.++...+.  . .....++|.+..++.+.++.+|..++++++.++...  
T Consensus       169 ~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~  248 (530)
T 1wa5_B          169 VVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKP  248 (530)
T ss_dssp             HHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSS
T ss_pred             HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCC
Confidence            12246789999999999999999999999999864221  1 223457889999999999999999999999998543  


Q ss_pred             -ChHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhch---hhHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHh
Q 009975          285 -GKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS  360 (521)
Q Consensus       285 -~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~  360 (521)
                       ........++|.+..++.++++.+|..++.++..++.....   ......++|.+.+++.++++.+|..++.+++.++.
T Consensus       249 ~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~  328 (530)
T 1wa5_B          249 QPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVT  328 (530)
T ss_dssp             CCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTT
T ss_pred             CCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHc
Confidence             12334567899999999999999999999999998754221   12224778999999999999999999999998875


Q ss_pred             hhCh---hhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCH---HHHHhhhHHHHHhhhcCcchHHHHHHHHHHH
Q 009975          361 QLGV---GFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP---EWAMQHITPQVLEMINNPHYLYRMTILRAIS  434 (521)
Q Consensus       361 ~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~  434 (521)
                      ..+.   ......++|.+..++.++++.+|..|+.+++.++.....   ......++|.|..++.++++.+|..++++++
T Consensus       329 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~  408 (530)
T 1wa5_B          329 GNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAIS  408 (530)
T ss_dssp             SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            4322   122345889999999999999999999999998752111   1123568899999999999999999999999


Q ss_pred             HhhcccCh--HH----HhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchH---------HH-----HhhHHHHHHH
Q 009975          435 LLAPVMGS--EI----TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS---------MV-----EKTIRPCLVE  494 (521)
Q Consensus       435 ~l~~~~~~--~~----~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~---------~~-----~~~~~~~l~~  494 (521)
                      .++...+.  +.    +...++|.+..++.++++.||..++.+|..++...+..         .+     ....++.|..
T Consensus       409 ~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~  488 (530)
T 1wa5_B          409 NASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFN  488 (530)
T ss_dssp             HHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHG
T ss_pred             HHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHH
Confidence            99875433  22    33568999999999999999999999999998754321         11     1335778888


Q ss_pred             hcCCCCccHHHHHHHHHHHHH
Q 009975          495 LTEDPDVDVRFFATQAIQSID  515 (521)
Q Consensus       495 l~~D~~~~vr~~a~~al~~l~  515 (521)
                      +..+++.+|+..|..++..+-
T Consensus       489 L~~~~~~~v~~~a~~il~~~~  509 (530)
T 1wa5_B          489 CQQNENDKIYEKAYKIIETYF  509 (530)
T ss_dssp             GGGCSCHHHHHHHHHHHHHHS
T ss_pred             HHcCCCHHHHHHHHHHHHHHC
Confidence            999999999999998887653

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=99.92  E-value=2.7e-22  Score=196.89  Aligned_cols=379  Identities=12%  Similarity=0.074  Sum_probs=289.0

Q ss_pred             HHHHHHhcCCCChHHHHHHHHhHHHHHHhhCch----hhHH-HHHHHHHHhhcCC-ChhHHHHHHHHHHHHhhhcChh--
Q 009975           99 RSIYTQLCQDDMPMVRRSAASNLGKFAATVEPA----HLKT-DIMSIFEDLTQDD-QDSVRLLAVEGCAALGKLLEPQ--  170 (521)
Q Consensus        99 ~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~----~~~~-~l~~~l~~l~~d~-~~~vr~~a~~~l~~l~~~~~~~--  170 (521)
                      ++.+.+.++++++.+|..|+..|..++.....+    .... .++|.+.+++.++ ++.+|..|+.++..++..-+..  
T Consensus        22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~  101 (450)
T 2jdq_A           22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTR  101 (450)
T ss_dssp             CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence            566666667889999999999999987532211    1223 6788888888887 8899999999999998743221  


Q ss_pred             -hhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhC---CCccccchHHHHHHhcCC-ChHHHHHHHHHhHHHHHhhh
Q 009975          171 -DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG---PEPTRMDLVPAYVRLLRD-NEAEVRIAAAGKVTKFCRIL  245 (521)
Q Consensus       171 -~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~---~~~~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~  245 (521)
                       .....++|.+..+++++++.+|..++.+|+.++....   .......+++.+.+++++ +++.+|..++.+|+.++...
T Consensus       102 ~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~  181 (450)
T 2jdq_A          102 IVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGK  181 (450)
T ss_dssp             HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCS
T ss_pred             HHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCC
Confidence             1235689999999999999999999999999875211   111224678999999985 78999999999999998653


Q ss_pred             CH---HHHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccCh---HHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHh
Q 009975          246 NP---ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK---DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQV  319 (521)
Q Consensus       246 ~~---~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~  319 (521)
                      ++   ......++|.+..++.+.++.+|..+++++..++.....   ......++|.+..++.++++.+|..++.+++.+
T Consensus       182 ~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l  261 (450)
T 2jdq_A          182 SPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNI  261 (450)
T ss_dssp             SSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHH
Confidence            11   122366889999999999999999999999999865422   112346899999999999999999999999999


Q ss_pred             hhhhchh---hHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhCh---hhhHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 009975          320 NQVIGID---LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---GFFDDKLGALCMQWLQDKVYSIRDAAANN  393 (521)
Q Consensus       320 ~~~~~~~---~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~  393 (521)
                      +...+..   .....++|.+.+++.++++.+|..++.+++.++.....   ......++|.+..+++++++.||..|+.+
T Consensus       262 ~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~  341 (450)
T 2jdq_A          262 VTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWA  341 (450)
T ss_dssp             TTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred             hhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHH
Confidence            7643211   12246899999999999999999999999998753221   12224678999999999999999999999


Q ss_pred             HHHHHHHhCHHH----HHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChH---------HHhhcH-----HHHHHh
Q 009975          394 LKRLAEEFGPEW----AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE---------ITCSRL-----LPVVIN  455 (521)
Q Consensus       394 l~~l~~~~~~~~----~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~---------~~~~~i-----l~~l~~  455 (521)
                      ++.++.....+.    ....++|.|..++.++++.+|..++.++..+.......         .+...+     ++.+..
T Consensus       342 L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~  421 (450)
T 2jdq_A          342 ITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEF  421 (450)
T ss_dssp             HHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHH
T ss_pred             HHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHH
Confidence            999986543322    23568999999999999999999999999998743221         122223     566777


Q ss_pred             hcCCCCchHHHHHHHHHHHHHh
Q 009975          456 ASKDRVPNIKFNVAKVLQSLIP  477 (521)
Q Consensus       456 ~l~d~~~~VR~~a~~~l~~~~~  477 (521)
                      +..++++.||..|..++..+..
T Consensus       422 l~~~~~~~v~~~a~~~l~~~~~  443 (450)
T 2jdq_A          422 LQSHENQEIYQKAFDLIEHYFG  443 (450)
T ss_dssp             HHCHHHHHHHHHHHHHHHHHHC
T ss_pred             HHcCCCHHHHHHHHHHHHHHCC
Confidence            7778888888888888777653

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=99.90  E-value=1.4e-21  Score=195.29  Aligned_cols=381  Identities=11%  Similarity=0.075  Sum_probs=294.6

Q ss_pred             HHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCch----hhHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHhhhcChh--
Q 009975           98 LRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPA----HLKTDIMSIFEDLTQDD-QDSVRLLAVEGCAALGKLLEPQ--  170 (521)
Q Consensus        98 l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~----~~~~~l~~~l~~l~~d~-~~~vr~~a~~~l~~l~~~~~~~--  170 (521)
                      .++.+.+.++++++.+|..|+..|..++.....+    .....++|.+..++.++ ++.+|..|+.+|..++..-+..  
T Consensus        88 ~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~  167 (530)
T 1wa5_B           88 ELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTK  167 (530)
T ss_dssp             CHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHH
Confidence            4666777778889999999999999987543221    23356788889988887 8899999999999998753221  


Q ss_pred             -hhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHh---CCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhC
Q 009975          171 -DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAV---GPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN  246 (521)
Q Consensus       171 -~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~---~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~  246 (521)
                       ......+|.+..++.++++.+|..++.+|+.++...   ........++|.+.+++.+.++.+|..|+.+|..++...+
T Consensus       168 ~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~  247 (530)
T 1wa5_B          168 VVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKK  247 (530)
T ss_dssp             HHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSS
T ss_pred             HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCC
Confidence             122457888899888999999999999999987421   1111234688999999999999999999999999986531


Q ss_pred             ---HHHHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccCh---HHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhh
Q 009975          247 ---PELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK---DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVN  320 (521)
Q Consensus       247 ---~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~  320 (521)
                         .......++|.+..++.+.++.+|..++.+++.++...+.   ......++|.+..++.++++.+|..|+.+++.++
T Consensus       248 ~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~  327 (530)
T 1wa5_B          248 PQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIV  327 (530)
T ss_dssp             SCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHT
T ss_pred             CCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHH
Confidence               2234467889999999999999999999999999864322   1122368899999999999999999999999987


Q ss_pred             hhhch---hhHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChh---hhHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q 009975          321 QVIGI---DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG---FFDDKLGALCMQWLQDKVYSIRDAAANNL  394 (521)
Q Consensus       321 ~~~~~---~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l  394 (521)
                      ..-+.   ..+...++|.+..++.++++.+|..++.+++.++......   .+...++|.+..++.++++.+|..|+.+|
T Consensus       328 ~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL  407 (530)
T 1wa5_B          328 TGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAI  407 (530)
T ss_dssp             TSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHH
Confidence            53221   1233578999999999999999999999999987632211   12245788889999999999999999999


Q ss_pred             HHHHHHhCH--H----HHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChH---------HH-----hhcHHHHHH
Q 009975          395 KRLAEEFGP--E----WAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE---------IT-----CSRLLPVVI  454 (521)
Q Consensus       395 ~~l~~~~~~--~----~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~---------~~-----~~~il~~l~  454 (521)
                      +.++...+.  +    .....++|.|..++.++++.+|..++.++..+.......         .+     ....++.+.
T Consensus       408 ~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~  487 (530)
T 1wa5_B          408 SNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIF  487 (530)
T ss_dssp             HHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHH
T ss_pred             HHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHH
Confidence            999876443  2    234568999999999999999999999999998643221         11     123577888


Q ss_pred             hhcCCCCchHHHHHHHHHHHHHhh
Q 009975          455 NASKDRVPNIKFNVAKVLQSLIPI  478 (521)
Q Consensus       455 ~~l~d~~~~VR~~a~~~l~~~~~~  478 (521)
                      .++.++++.|+..|..++..+...
T Consensus       488 ~L~~~~~~~v~~~a~~il~~~~~~  511 (530)
T 1wa5_B          488 NCQQNENDKIYEKAYKIIETYFGE  511 (530)
T ss_dssp             GGGGCSCHHHHHHHHHHHHHHSSS
T ss_pred             HHHcCCCHHHHHHHHHHHHHHCCc
Confidence            899999999999999999887754

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=99.90  E-value=5.7e-19  Score=178.44  Aligned_cols=495  Identities=11%  Similarity=0.051  Sum_probs=350.0

Q ss_pred             hhhhHHhhhhcCc--hhHHHHHHHHHHHHHHhhcChhHHHHh----HHHHHHHhhc---C----C----CCcchhhhhhh
Q 009975           20 VLLPPLETLCTVE--ETCVRDKAVESLCRIGSQMRESDLVDW----YIPLVKRLAA---G----E----WFTARVSACGL   82 (521)
Q Consensus        20 ~l~~~l~~l~~~~--~~~vR~~a~~~l~~i~~~~~~~~~~~~----l~p~i~~~~~---~----~----~~~~r~~~~~~   82 (521)
                      .++..|..++.+.  ....|+.++..+.+.+..-........    =+.-+.+...   +    .    ....|..+..+
T Consensus       148 ~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~  227 (810)
T 3now_A          148 TLLTCLVYSITDRTISGAARDGVIELITRNVHYTALEWAERLVEIRGLCRLLDVCSELEDYKYESAMDITGSSSTIASVC  227 (810)
T ss_dssp             HHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTCTTTTHHHHHHHTTHHHHHHHHHTCCSSSCCSSCCCCCTTHHHHHHHH
T ss_pred             HHHHHHHHHhhccccChhhHHHHHHHHHHhCCccccccccchhhHhhHHHHHHHHhcCccccccccCCCChhHHHHHHHH
Confidence            4555555555544  568899999888777754432211111    1111111111   1    0    23567777777


Q ss_pred             hhhhcCCCC-----hHHHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCc---hhh-HHHHHHHHHHhhcCCChhHH
Q 009975           83 FHIAYPSAP-----DILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP---AHL-KTDIMSIFEDLTQDDQDSVR  153 (521)
Q Consensus        83 ~~~~~~~~~-----~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~---~~~-~~~l~~~l~~l~~d~~~~vr  153 (521)
                      +..+|....     +...+.+-.++.......+..-+-.|+.++..+......   ..+ .+..+|.+..++.+++..++
T Consensus       228 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~li~Ll~s~~~~~q  307 (810)
T 3now_A          228 LARIYENMYYDEAKARFTDQIDEYIKDKLLAPDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMILAMATTDDELQQ  307 (810)
T ss_dssp             HHHHHHTCCSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHSSSHHHHHHHHHTTTHHHHHHHHHHSSCHHHH
T ss_pred             HHHHHHHhccchhHHHHHHHHHHHHHHHhccCChHhHHHHHHHHHHHhcCCHHHHHHHHhccchHHHHHHHhCCCCHHHH
Confidence            788887665     334444555666666666677777778788777643221   122 45778999999999999999


Q ss_pred             HHHHHHHHHHhhhcCh-hhhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCC----cc----ccchHHHHHHhcC
Q 009975          154 LLAVEGCAALGKLLEP-QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE----PT----RMDLVPAYVRLLR  224 (521)
Q Consensus       154 ~~a~~~l~~l~~~~~~-~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~----~~----~~~l~~~l~~~l~  224 (521)
                      ..|+.+++..+..-.. +...+.-.|.+..++++++..+|..++.+|.++....+.+    ..    ...+++.+.+++.
T Consensus       308 ~~A~~al~~aa~~~~~R~~I~~~gv~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~  387 (810)
T 3now_A          308 RVACECLIAASSKKDKAKALCEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLI  387 (810)
T ss_dssp             HHHHHHHHHHTTSHHHHHTTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCcHHHHHHHHcCcHHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhc
Confidence            9999999998765211 1112223488999999888999999999888886433211    11    1357888999988


Q ss_pred             CC--hHHHHHHHHHhHHHHHhhhCHH-HHH--HhhhHHHHHhccCCcHHHHHHHHHHHHccccccC--------------
Q 009975          225 DN--EAEVRIAAAGKVTKFCRILNPE-LAI--QHILPCVKELSSDSSQHVRSALASVIMGMAPLLG--------------  285 (521)
Q Consensus       225 d~--~~~vr~~a~~~l~~l~~~~~~~-~~~--~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~--------------  285 (521)
                      ++  ++++|..|+.+|..+....... .+.  ..++|.+.+++...+..++..+++++++++....              
T Consensus       388 ~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~  467 (810)
T 3now_A          388 KPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKF  467 (810)
T ss_dssp             CSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTT
T ss_pred             CCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHH
Confidence            77  7899999999999987643221 222  3478888888888888899999999999986331              


Q ss_pred             ---------------------hHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhc--hhhHhhhHHHHHHHHhcC
Q 009975          286 ---------------------KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG--IDLLSQSLLPAIVELAED  342 (521)
Q Consensus       286 ---------------------~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~--~~~~~~~~~~~l~~~~~~  342 (521)
                                           +.......+|.+..++.++++.+|..|++++..++..-.  ........+|.+..++.+
T Consensus       468 s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s  547 (810)
T 3now_A          468 AKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALE  547 (810)
T ss_dssp             TCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHS
T ss_pred             hhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcc
Confidence                                 011123579999999999999999999999999975321  112335779999999999


Q ss_pred             CChHHHHHHHHHhHHHHhhhChhhh-----HHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHHHHh---CHHHHHhhhHHH
Q 009975          343 RHWRVRLAIIEYIPLLASQLGVGFF-----DDKLGALCMQWLQDK-VYSIRDAAANNLKRLAEEF---GPEWAMQHITPQ  413 (521)
Q Consensus       343 ~~~~vr~~~~~~l~~l~~~~~~~~~-----~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~---~~~~~~~~l~~~  413 (521)
                      .+...|..++.+|..++....++..     ....+|.+..++..+ +...+..|+.+|..++..-   .........+|.
T Consensus       548 ~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~  627 (810)
T 3now_A          548 GTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSK  627 (810)
T ss_dssp             SCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHH
T ss_pred             CCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHH
Confidence            9999999999999998866544321     123678888888754 4445567888888887431   112233567899


Q ss_pred             HHhhhcCcchHHHHHHHHHHHHhhcccChHH---Hh--hcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhch---HHHH
Q 009975          414 VLEMINNPHYLYRMTILRAISLLAPVMGSEI---TC--SRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ---SMVE  485 (521)
Q Consensus       414 l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~---~~--~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~---~~~~  485 (521)
                      |..++.+++..+|..|+++++.++.  +++.   +.  ...++.++.+++.++..+|..|+++|+.+......   ..+.
T Consensus       628 Lv~LL~s~~~~Vq~~A~~~L~NLa~--~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~  705 (810)
T 3now_A          628 IEYYLMEDHLYLTRAAAQCLCNLVM--SEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILA  705 (810)
T ss_dssp             HHHHHHSCCTTHHHHHHHHHHHHTT--SHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHT
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHhC--ChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence            9999999999999999999999986  3221   22  35789999999999999999999999999874221   2233


Q ss_pred             -hhHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 009975          486 -KTIRPCLVELTEDPDVDVRFFATQAIQSIDH  516 (521)
Q Consensus       486 -~~~~~~l~~l~~D~~~~vr~~a~~al~~l~~  516 (521)
                       ...+|.|.+++.+++.++|..|++++..+..
T Consensus       706 ~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~  737 (810)
T 3now_A          706 IASWLDILHTLIANPSPAVQHRGIVIILNMIN  737 (810)
T ss_dssp             STTHHHHHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred             HcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHh
Confidence             4688999999999999999999999998864

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=99.89  E-value=1.3e-20  Score=195.51  Aligned_cols=461  Identities=13%  Similarity=0.064  Sum_probs=323.7

Q ss_pred             HhhhhHHhhhhcCchhHHHHHHHHHHHHHHhhcChhH-HH--HhHHHHHHHhhc-CCCCcchhhhhhhhhhhcCCCChH-
Q 009975           19 HVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESD-LV--DWYIPLVKRLAA-GEWFTARVSACGLFHIAYPSAPDI-   93 (521)
Q Consensus        19 ~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~-~~--~~l~p~i~~~~~-~~~~~~r~~~~~~~~~~~~~~~~~-   93 (521)
                      ...+|.|..++.++++.+|..|+.+|..++..-+... +.  ...++.+.+.+. +++..+|..++..+..+... ++. 
T Consensus       149 ~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~-~~~~  227 (780)
T 2z6g_A          149 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHH-REGL  227 (780)
T ss_dssp             HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS-HHHH
T ss_pred             hCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-chhH
Confidence            3467777788888999999999999999998643321 11  245666655554 44667787777777665533 221 


Q ss_pred             ---HHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCch---hhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhc
Q 009975           94 ---LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPA---HLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLL  167 (521)
Q Consensus        94 ---~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~  167 (521)
                         .....++.+..+++++++.+|..|+.+|..++......   ......++.+..++.+++..++..++.++..++..-
T Consensus       228 ~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~  307 (780)
T 2z6g_A          228 LAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN  307 (780)
T ss_dssp             HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Confidence               22347788999999999999999999999999764321   124567889999999888899999999998877421


Q ss_pred             Ch---hhhhhhhHHHHHHhcCCCChH-HHHHHHHHHHHHHHHhC--CCccccchHHHHHHhcCCChHHHHHHHHHhHHHH
Q 009975          168 EP---QDCVAHILPVIVNFSQDKSWR-VRYMVANQLYELCEAVG--PEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKF  241 (521)
Q Consensus       168 ~~---~~~~~~l~~~l~~~~~d~~~~-vR~~~~~~l~~i~~~~~--~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l  241 (521)
                      ..   .......++.+..++.+.+.. .+..++.++..++..-.  ........++.+..++.+.+..++..++.+|..+
T Consensus       308 ~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L  387 (780)
T 2z6g_A          308 QESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL  387 (780)
T ss_dssp             HHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHH
Confidence            11   112234567777777765554 45566777777663111  1112345789999999999999999999999998


Q ss_pred             HhhhCHHHHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccChH---HHHHhHHHHHHHhhcCC-C-hHHHHHHHHHH
Q 009975          242 CRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD---ATIEQLLPIFLSLLKDE-F-PDVRLNIISKL  316 (521)
Q Consensus       242 ~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~---~~~~~l~~~l~~~l~d~-~-~~vr~~a~~~l  316 (521)
                      +...........++|.+.+++.++++.+|..++.+++.++..-...   ......++.+..++.+. + +++|..|+.+|
T Consensus       388 ~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL  467 (780)
T 2z6g_A          388 SDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL  467 (780)
T ss_dssp             HTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHH
Confidence            8755332223457889999999999999999999999997643211   11234688888888763 3 49999999999


Q ss_pred             HHhhhhhch------hhHhhhHHHHHHHHhcCCC-hHHHHHHHHHhHHHHhhhChh--hhHHHHHHHHHHHcCCCc----
Q 009975          317 DQVNQVIGI------DLLSQSLLPAIVELAEDRH-WRVRLAIIEYIPLLASQLGVG--FFDDKLGALCMQWLQDKV----  383 (521)
Q Consensus       317 ~~~~~~~~~------~~~~~~~~~~l~~~~~~~~-~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~----  383 (521)
                      +.+....+.      .......+|.+.+++.+.+ +.+|..++.++..++..-...  .....++|.+..++.+.+    
T Consensus       468 ~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~  547 (780)
T 2z6g_A          468 RHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQ  547 (780)
T ss_dssp             HHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHHhcchhHH
Confidence            998753221      1123466889999887765 699999999999987532111  112346777777776644    


Q ss_pred             ------------------HHHHHHHHHHHHHHHHHhCH--HHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccCh-
Q 009975          384 ------------------YSIRDAAANNLKRLAEEFGP--EWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS-  442 (521)
Q Consensus       384 ------------------~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~-  442 (521)
                                        .+++..++.+|+.++..-..  .......+|.|..++.+++..+|..++.+++.+...-.. 
T Consensus       548 ~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~  627 (780)
T 2z6g_A          548 RRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAA  627 (780)
T ss_dssp             HTTC------CCSTTCCHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTSHHHH
T ss_pred             HHHhhccccchhhcccChHHHHHHHHHHHHHHhcChhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHH
Confidence                              34566677777766521100  112356789999999999999999999999998742111 


Q ss_pred             H-HHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhc
Q 009975          443 E-ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD  480 (521)
Q Consensus       443 ~-~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~  480 (521)
                      . ......++.+..++.++++.||..|+.+|..+...-+
T Consensus       628 ~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~~~~  666 (780)
T 2z6g_A          628 EAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKP  666 (780)
T ss_dssp             HHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCh
Confidence            1 1123467889999999999999999999999987544

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=99.89  E-value=2.9e-20  Score=185.97  Aligned_cols=377  Identities=11%  Similarity=0.082  Sum_probs=276.5

Q ss_pred             HHHHHHhhcCCChhHHHHHHHHHHHHhhhcCh----hhhhhhhHHHHHHhcCCCC-hHHHHHHHHHHHHHHHHhC---CC
Q 009975          138 MSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP----QDCVAHILPVIVNFSQDKS-WRVRYMVANQLYELCEAVG---PE  209 (521)
Q Consensus       138 ~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~~~~d~~-~~vR~~~~~~l~~i~~~~~---~~  209 (521)
                      +|.+...+.++++.+|..|+..+..++..-..    ......++|.+..++.+++ +.+|..++.+|+.++..-.   ..
T Consensus        76 l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~  155 (528)
T 4b8j_A           76 LPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKV  155 (528)
T ss_dssp             HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHH
Confidence            45555555666777777777777777654321    1223457788888777765 8888888888888774110   01


Q ss_pred             ccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCH--HH-HHHhhhHHHHHhc-cCCcHHHHHHHHHHHHccccccC
Q 009975          210 PTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP--EL-AIQHILPCVKELS-SDSSQHVRSALASVIMGMAPLLG  285 (521)
Q Consensus       210 ~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~--~~-~~~~~~~~l~~~~-~d~~~~vr~~~~~~l~~i~~~~~  285 (521)
                      ......+|.+.+++.++++.+|..|+.+|+.++...+.  .. .....+|.+..++ .+.++.++..+++++..++...+
T Consensus       156 ~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~  235 (528)
T 4b8j_A          156 VIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKP  235 (528)
T ss_dssp             HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSS
T ss_pred             HHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCC
Confidence            12245788899999988889999999999988764221  11 1223677788887 67889999999999998876532


Q ss_pred             --hHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchh---hHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHh
Q 009975          286 --KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID---LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS  360 (521)
Q Consensus       286 --~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~  360 (521)
                        .......++|.+..++.+.+++++..++.++..++......   .....++|.+..++.++++.+|..++.+++.++.
T Consensus       236 ~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~  315 (528)
T 4b8j_A          236 QPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVT  315 (528)
T ss_dssp             CCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred             CCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHc
Confidence              23335678999999999999999999999999987543211   1234678999999999999999999999988876


Q ss_pred             hhCh---hhhHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHHHHhCH---HHHHhhhHHHHHhhhcCcchHHHHHHHHHH
Q 009975          361 QLGV---GFFDDKLGALCMQWLQDK-VYSIRDAAANNLKRLAEEFGP---EWAMQHITPQVLEMINNPHYLYRMTILRAI  433 (521)
Q Consensus       361 ~~~~---~~~~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l  433 (521)
                      ....   ..+...++|.+..++.++ ++.+|..|+.+++.++.....   ......++|.|..++.++++.+|..++.++
T Consensus       316 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL  395 (528)
T 4b8j_A          316 GDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAI  395 (528)
T ss_dssp             SCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHH
Confidence            3321   122244688899999998 999999999999999752111   112357889999999989999999999999


Q ss_pred             HHhhcccChHH----HhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchH---------HH-----HhhHHHHHHHh
Q 009975          434 SLLAPVMGSEI----TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS---------MV-----EKTIRPCLVEL  495 (521)
Q Consensus       434 ~~l~~~~~~~~----~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~---------~~-----~~~~~~~l~~l  495 (521)
                      +.++...+.+.    ....+++.+..++.++++.++..++.+|..++...+..         .+     ....++.+..+
T Consensus       396 ~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L  475 (528)
T 4b8j_A          396 SNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENL  475 (528)
T ss_dssp             HHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHG
T ss_pred             HHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHH
Confidence            99987644332    12468899999999999999999999999998754321         11     13346777888


Q ss_pred             cCCCCccHHHHHHHHHHHH
Q 009975          496 TEDPDVDVRFFATQAIQSI  514 (521)
Q Consensus       496 ~~D~~~~vr~~a~~al~~l  514 (521)
                      .++++.+|+..|...+..+
T Consensus       476 ~~~~~~~v~~~a~~il~~~  494 (528)
T 4b8j_A          476 QSHDNNEIYEKAVKILEAY  494 (528)
T ss_dssp             GGCSSHHHHHHHHHHHHHH
T ss_pred             HcCCCHHHHHHHHHHHHHH
Confidence            8999999999999988765

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=99.89  E-value=4.7e-20  Score=184.40  Aligned_cols=381  Identities=11%  Similarity=0.081  Sum_probs=293.9

Q ss_pred             HHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCc----hhhHHHHHHHHHHhhcCCC-hhHHHHHHHHHHHHhhhcChh--
Q 009975           98 LRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP----AHLKTDIMSIFEDLTQDDQ-DSVRLLAVEGCAALGKLLEPQ--  170 (521)
Q Consensus        98 l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~l~~d~~-~~vr~~a~~~l~~l~~~~~~~--  170 (521)
                      -++.+.+.+.++++.+|..|+..|..++.....    ......++|.+.+++.+++ +.+|..|+.+|..++..-+..  
T Consensus        75 ~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~  154 (528)
T 4b8j_A           75 SLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTK  154 (528)
T ss_dssp             CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHH
Confidence            366667777788999999999999998765431    1234567888888888776 899999999999999752221  


Q ss_pred             -hhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhC---CCccccchHHHHHHhc-CCChHHHHHHHHHhHHHHHhhh
Q 009975          171 -DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG---PEPTRMDLVPAYVRLL-RDNEAEVRIAAAGKVTKFCRIL  245 (521)
Q Consensus       171 -~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~---~~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~  245 (521)
                       ......+|.+..++.++++.+|..++.+|+.++....   ........++.+.+++ .+.++.++..++.+|..++...
T Consensus       155 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~  234 (528)
T 4b8j_A          155 VVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGK  234 (528)
T ss_dssp             HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSS
T ss_pred             HHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCC
Confidence             1223588999999999999999999999999985211   1112245788899998 6778999999999999998763


Q ss_pred             C--HHHHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccChH---HHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhh
Q 009975          246 N--PELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD---ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVN  320 (521)
Q Consensus       246 ~--~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~  320 (521)
                      +  .......++|.+..++.+.++.++..++.+++.++...+..   .....++|.+..++.++++.++..|+.+++.++
T Consensus       235 ~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~  314 (528)
T 4b8j_A          235 PQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIV  314 (528)
T ss_dssp             SCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred             CCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHH
Confidence            2  22344668899999999999999999999999998654322   123367999999999999999999999999998


Q ss_pred             hhhch---hhHhhhHHHHHHHHhcCC-ChHHHHHHHHHhHHHHhhhCh---hhhHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 009975          321 QVIGI---DLLSQSLLPAIVELAEDR-HWRVRLAIIEYIPLLASQLGV---GFFDDKLGALCMQWLQDKVYSIRDAAANN  393 (521)
Q Consensus       321 ~~~~~---~~~~~~~~~~l~~~~~~~-~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~  393 (521)
                      .....   ..+...++|.+..++.++ ++.+|..++.+++.++.....   ..+...++|.+..++.+.++.+|..|+.+
T Consensus       315 ~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~a  394 (528)
T 4b8j_A          315 TGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWA  394 (528)
T ss_dssp             TSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHH
Confidence            63221   122356789999999888 999999999999999863221   11223567899999999999999999999


Q ss_pred             HHHHHHHhCHHH----HHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChH---------HH-----hhcHHHHHHh
Q 009975          394 LKRLAEEFGPEW----AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE---------IT-----CSRLLPVVIN  455 (521)
Q Consensus       394 l~~l~~~~~~~~----~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~---------~~-----~~~il~~l~~  455 (521)
                      |+.++...+.+.    ....+++.|..++.++++.++..++.++..+.......         .+     ....++.+..
T Consensus       395 L~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~  474 (528)
T 4b8j_A          395 ISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIEN  474 (528)
T ss_dssp             HHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHH
T ss_pred             HHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHH
Confidence            999987633332    23568999999999999999999999999998643220         11     1334677888


Q ss_pred             hcCCCCchHHHHHHHHHHHHHhh
Q 009975          456 ASKDRVPNIKFNVAKVLQSLIPI  478 (521)
Q Consensus       456 ~l~d~~~~VR~~a~~~l~~~~~~  478 (521)
                      +..++++.|+..|...+..+...
T Consensus       475 L~~~~~~~v~~~a~~il~~~~~~  497 (528)
T 4b8j_A          475 LQSHDNNEIYEKAVKILEAYWMD  497 (528)
T ss_dssp             GGGCSSHHHHHHHHHHHHHHCC-
T ss_pred             HHcCCCHHHHHHHHHHHHHHCCC
Confidence            88999999999999999887654

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=99.88  E-value=8.7e-20  Score=184.34  Aligned_cols=468  Identities=9%  Similarity=0.002  Sum_probs=316.1

Q ss_pred             HhhhhcCchhHHHHHHHHHHHHHHhhcChhHHHHhHHHHHHHhhcCCCCcchhhhhhhhhhhcCCCChHHHHHHHHHHHH
Q 009975           25 LETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQ  104 (521)
Q Consensus        25 l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~p~i~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~~l~~  104 (521)
                      +.+++.+++...|+.+--.+..+++.-  .++.-..++.+.+-+++++..+|..|+..++.+.   .++....+.+.+..
T Consensus        75 vik~~~s~~~~~Krl~Yl~~~~~~~~~--~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~---~~~~~~~l~~~l~~  149 (618)
T 1w63_A           75 CLKLIASQKFTDKRIGYLGAMLLLDER--QDVHLLMTNCIKNDLNHSTQFVQGLALCTLGCMG---SSEMCRDLAGEVEK  149 (618)
T ss_dssp             HHHHHHSSSHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHC---CHHHHHHHHHHHHH
T ss_pred             HHHHHcCCchHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHhcCCCCHhHHHHHHHHHHhcC---CHHHHHHHHHHHHH
Confidence            334555677777777666666655531  2222345566666666777788888888887776   34556778888888


Q ss_pred             hcCCCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcChh-hhhhhhHHHHHHh
Q 009975          105 LCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ-DCVAHILPVIVNF  183 (521)
Q Consensus       105 l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~-~~~~~l~~~l~~~  183 (521)
                      ++.|+++.||+.|+.+++.+....++  ..+.+++.+..++.|.++.|+..|+.++..++..-++- .....++|.+...
T Consensus       150 ~L~~~~~~VRk~A~~al~~l~~~~p~--~v~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~~~v~~l~~~  227 (618)
T 1w63_A          150 LLKTSNSYLRKKAALCAVHVIRKVPE--LMEMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLVRI  227 (618)
T ss_dssp             HHHSCCHHHHHHHHHHHHHHHHHCGG--GGGGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHH
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHChH--HHHHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHH
Confidence            88888999999999999998875442  33466777788888888899999998888887652210 1122334433332


Q ss_pred             cC---------------CCChHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhc------CCChHHHHHHHHHhHHHHH
Q 009975          184 SQ---------------DKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLL------RDNEAEVRIAAAGKVTKFC  242 (521)
Q Consensus       184 ~~---------------d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l------~d~~~~vr~~a~~~l~~l~  242 (521)
                      +.               ..++-.+..+++.++.++..  .......+.+.+.+++      ++.+..|...|+.++..+.
T Consensus       228 L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~--~~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~  305 (618)
T 1w63_A          228 LKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRN--DDDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIK  305 (618)
T ss_dssp             HHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTT--CHHHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcC
Confidence            21               24666777777777766531  0011234455555543      2345678888888776643


Q ss_pred             hhhCHHHHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccChHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhh
Q 009975          243 RILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV  322 (521)
Q Consensus       243 ~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~  322 (521)
                      .   .........+.+..++.++++.+|..++.+++.++...+.  ......+.++.++.|++..||..++..+..++..
T Consensus       306 ~---~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~--~~~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~  380 (618)
T 1w63_A          306 S---ESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHN--AVQRHRSTIVDCLKDLDVSIKRRAMELSFALVNG  380 (618)
T ss_dssp             C---CHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHH--HHGGGHHHHHHGGGSSCHHHHHHHHHHHHHHCCS
T ss_pred             C---CHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHH--HHHHHHHHHHHHccCCChhHHHHHHHHHHHHccc
Confidence            2   1222334567777778888889999999999998754332  2345567788899999999999999999998764


Q ss_pred             hchhhHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChhhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhC
Q 009975          323 IGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFG  402 (521)
Q Consensus       323 ~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~  402 (521)
                      -..    +.+++.+.+++.+.+..+|..++.+++.++..+++.  ..+.++.++.++++....++..+...+..+.....
T Consensus       381 ~nv----~~iv~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~--~~~~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~p  454 (618)
T 1w63_A          381 NNI----RGMMKELLYFLDSCEPEFKADCASGIFLAAEKYAPS--KRWHIDTIMRVLTTAGSYVRDDAVPNLIQLITNSV  454 (618)
T ss_dssp             SST----HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSSCCC--HHHHHHHHHHHHHHTGGGSCSSHHHHHHHHHHHSC
T ss_pred             ccH----HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCcc--HHHHHHHHHHHHHhccchhHHHHHHHHHHHHhcCh
Confidence            221    456777777778888999999999999999887644  35567788888888777777777777777765443


Q ss_pred             HHHHHhhhHHHHHhhhcC--cchHHHHHHHHHHHHhhcccChH---------HHhhcHHHHHHhhcC--CCCchHHHHHH
Q 009975          403 PEWAMQHITPQVLEMINN--PHYLYRMTILRAISLLAPVMGSE---------ITCSRLLPVVINASK--DRVPNIKFNVA  469 (521)
Q Consensus       403 ~~~~~~~l~~~l~~~l~~--~~~~~r~~a~~~l~~l~~~~~~~---------~~~~~il~~l~~~l~--d~~~~VR~~a~  469 (521)
                      .  .....++.+.+.+.+  .+......+++++|..+..+...         .....+.+.+...++  ..++.||..++
T Consensus       455 ~--l~~~~v~~L~~~l~~~~~~~~~~~~~~wilGEy~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vr~~~l  532 (618)
T 1w63_A          455 E--MHAYTVQRLYKAILGDYSQQPLVQVAAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDILESVLISNMSTSVTRGYAL  532 (618)
T ss_dssp             S--THHHHHHHHHHHHHHCCSCSHHHHHHHHHHHHHHHHHTTCCCSSSCCCCCCHHHHHHHHHHHHHSTTCCHHHHHHHH
T ss_pred             h--HHHHHHHHHHHHHhcccccHHHHHHHHHHHhhhHHHhcccccccccccCCCHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence            1  223455556555543  23344457899999998754220         011234444444443  56889999999


Q ss_pred             HHHHHHHhhhchHHHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 009975          470 KVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDH  516 (521)
Q Consensus       470 ~~l~~~~~~~~~~~~~~~~~~~l~~l~~D~~~~vr~~a~~al~~l~~  516 (521)
                      .++.++....+.  ..+.+...|..+..|.|.+||..|...+.-+..
T Consensus       533 ta~~Kl~~~~~~--~~~~l~~~L~~~~~~~d~evrdRA~~y~~ll~~  577 (618)
T 1w63_A          533 TAIMKLSTRFTC--TVNRIKKVVSIYGSSIDVELQQRAVEYNALFKK  577 (618)
T ss_dssp             HHHHHHHTTCSS--CHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhCcc--hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcC
Confidence            999998876542  246677777788899999999999998877653

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=99.87  E-value=1e-18  Score=178.49  Aligned_cols=420  Identities=12%  Similarity=0.046  Sum_probs=302.9

Q ss_pred             HHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCchh--h-HHHHHHHHHHhhcC-CChhHHHHHHHHHHHHhhhcChh--
Q 009975           97 ELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAH--L-KTDIMSIFEDLTQD-DQDSVRLLAVEGCAALGKLLEPQ--  170 (521)
Q Consensus        97 ~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~--~-~~~l~~~l~~l~~d-~~~~vr~~a~~~l~~l~~~~~~~--  170 (521)
                      ..++.+..+++++++.+|..|+..|+.++.......  . ....++.+.+.+.+ ++..+|..|+.+|..++..-...  
T Consensus        14 g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~   93 (644)
T 2z6h_A           14 RAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLA   93 (644)
T ss_dssp             TTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHH
T ss_pred             chHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHH
Confidence            356777778888999999999999999987543211  1 23556666666654 47899999999999887642111  


Q ss_pred             hhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCC---ccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCH
Q 009975          171 DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE---PTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP  247 (521)
Q Consensus       171 ~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~  247 (521)
                      ......+|.+..+++++++.+|..++.+|..++......   ......+|.+.++++++++.++..++.+|..++...+.
T Consensus        94 i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~  173 (644)
T 2z6h_A           94 IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQE  173 (644)
T ss_dssp             HHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcH
Confidence            123347899999999999999999999999998754321   12367899999999999999999999999888752211


Q ss_pred             H---HHHHhhhHHHHHhccCC-cHHHHHHHHHHHHccccccCh--HHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhh
Q 009975          248 E---LAIQHILPCVKELSSDS-SQHVRSALASVIMGMAPLLGK--DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQ  321 (521)
Q Consensus       248 ~---~~~~~~~~~l~~~~~d~-~~~vr~~~~~~l~~i~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~  321 (521)
                      .   ......++.+..++.+. ...++..++.++..++..-..  .......+|.+..++.+.+..++..++.++..++.
T Consensus       174 ~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~  253 (644)
T 2z6h_A          174 SKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSD  253 (644)
T ss_dssp             HHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGG
T ss_pred             HHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhh
Confidence            1   11233567777777654 467788888888888753221  12233578999999999999999999999999986


Q ss_pred             hhchhhHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhCh---hhhHHHHHHHHHHHcCCC--cHHHHHHHHHHHHH
Q 009975          322 VIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---GFFDDKLGALCMQWLQDK--VYSIRDAAANNLKR  396 (521)
Q Consensus       322 ~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~--~~~vr~~a~~~l~~  396 (521)
                      ..........++|.+.+++.+.++.+|..++.++..++..-..   .......+|.+..++.+.  .+.+|..|+.+|+.
T Consensus       254 ~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~n  333 (644)
T 2z6h_A          254 AATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRH  333 (644)
T ss_dssp             GCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             cchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHH
Confidence            5433222357899999999999999999999999988764211   122234677888887763  37999999999999


Q ss_pred             HHHHhCHH------HHHhhhHHHHHhhhcCcc-hHHHHHHHHHHHHhhcccC--hHHHhhcHHHHHHhhcCCCCc-----
Q 009975          397 LAEEFGPE------WAMQHITPQVLEMINNPH-YLYRMTILRAISLLAPVMG--SEITCSRLLPVVINASKDRVP-----  462 (521)
Q Consensus       397 l~~~~~~~------~~~~~l~~~l~~~l~~~~-~~~r~~a~~~l~~l~~~~~--~~~~~~~il~~l~~~l~d~~~-----  462 (521)
                      +....+.+      ......+|.|.+++.+++ +.+|..++++++.++..-.  .......++|.+..++.+..+     
T Consensus       334 L~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~  413 (644)
T 2z6h_A          334 LTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRR  413 (644)
T ss_dssp             HTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHTTC
T ss_pred             HhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHHHHHHHcCCHHHHHHHHhccchhhhhH
Confidence            96432221      223467899999998875 7999999999999985211  122345678888888776443     


Q ss_pred             -----------------hHHHHHHHHHHHHHhhhchH--HHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 009975          463 -----------------NIKFNVAKVLQSLIPIVDQS--MVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDH  516 (521)
Q Consensus       463 -----------------~VR~~a~~~l~~~~~~~~~~--~~~~~~~~~l~~l~~D~~~~vr~~a~~al~~l~~  516 (521)
                                       .|+..++.+|..++......  ......+|.|.+++.+.+.+|+..|..++..+..
T Consensus       414 a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~  486 (644)
T 2z6h_A          414 TSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ  486 (644)
T ss_dssp             ----------CCSSCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred             hhhccccchhcccccHHHHHHHHHHHHHHHhcCHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence                             45556666666665432221  1234578899999999999999999999887653

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=99.86  E-value=5.2e-19  Score=177.25  Aligned_cols=421  Identities=11%  Similarity=0.031  Sum_probs=294.4

Q ss_pred             HHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCch-h-h-HHHHHHHHHHhhc-CCChhHHHHHHHHHHHHhhhcCh-
Q 009975           95 KTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPA-H-L-KTDIMSIFEDLTQ-DDQDSVRLLAVEGCAALGKLLEP-  169 (521)
Q Consensus        95 ~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~-~-~-~~~l~~~l~~l~~-d~~~~vr~~a~~~l~~l~~~~~~-  169 (521)
                      ....++.+..+++++++.+|..|+..|+.++..-... . . ....++.+.+++. ++++.+|..++.+|..++..-.. 
T Consensus        15 ~~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~   94 (529)
T 1jdh_A           15 ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGL   94 (529)
T ss_dssp             --CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHH
T ss_pred             hHhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhH
Confidence            3456788888888999999999999999998643221 1 1 2245666666654 45788999999999998754211 


Q ss_pred             -hhhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCC---ccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhh
Q 009975          170 -QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE---PTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRIL  245 (521)
Q Consensus       170 -~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~  245 (521)
                       .......+|.+..+++++++.+|..++.++..++..-+..   ......+|.+.++++++++.++..+..+|..++..-
T Consensus        95 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~  174 (529)
T 1jdh_A           95 LAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN  174 (529)
T ss_dssp             HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCC
Confidence             1123357889999999999999999999999998753321   113578999999999999999999999998876521


Q ss_pred             CH--HH-HHHhhhHHHHHhccCC-cHHHHHHHHHHHHccccccCh--HHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHh
Q 009975          246 NP--EL-AIQHILPCVKELSSDS-SQHVRSALASVIMGMAPLLGK--DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQV  319 (521)
Q Consensus       246 ~~--~~-~~~~~~~~l~~~~~d~-~~~vr~~~~~~l~~i~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~  319 (521)
                      +.  .. .....++.+..++.+. ....+..+..++..++..-..  .......+|.+..++.+.+++++..++.++..+
T Consensus       175 ~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l  254 (529)
T 1jdh_A          175 QESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL  254 (529)
T ss_dssp             HHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHH
Confidence            11  11 1223456666655543 455667777777777643221  222346789999999999999999999999998


Q ss_pred             hhhhchhhHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhCh---hhhHHHHHHHHHHHcCC--CcHHHHHHHHHHH
Q 009975          320 NQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---GFFDDKLGALCMQWLQD--KVYSIRDAAANNL  394 (521)
Q Consensus       320 ~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d--~~~~vr~~a~~~l  394 (521)
                      +...........++|.+.+++.++++.+|..++.++..++..-..   .......+|.+..++.+  .++.+|..++.++
T Consensus       255 ~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L  334 (529)
T 1jdh_A          255 SDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL  334 (529)
T ss_dssp             HTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHH
Confidence            865433223357899999999999999999999999988664211   11223357777777765  3479999999999


Q ss_pred             HHHHHHhCH------HHHHhhhHHHHHhhhcCcc-hHHHHHHHHHHHHhhcccC--hHHHhhcHHHHHHhhcCCCCchHH
Q 009975          395 KRLAEEFGP------EWAMQHITPQVLEMINNPH-YLYRMTILRAISLLAPVMG--SEITCSRLLPVVINASKDRVPNIK  465 (521)
Q Consensus       395 ~~l~~~~~~------~~~~~~l~~~l~~~l~~~~-~~~r~~a~~~l~~l~~~~~--~~~~~~~il~~l~~~l~d~~~~VR  465 (521)
                      +.+....+.      .......+|.+..++.+++ +.+|..++++++.++..-.  .......++|.+..++.++++.+|
T Consensus       335 ~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~  414 (529)
T 1jdh_A          335 RHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQ  414 (529)
T ss_dssp             HHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHC
T ss_pred             HHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChhhhHHHHHcCCHHHHHHHHHHHhHHHH
Confidence            998643222      1223457899999998876 7999999999999985211  122345788999999988888888


Q ss_pred             HHHHHHHHH----------------------HHhhhch--HHHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHH
Q 009975          466 FNVAKVLQS----------------------LIPIVDQ--SMVEKTIRPCLVELTEDPDVDVRFFATQAIQSID  515 (521)
Q Consensus       466 ~~a~~~l~~----------------------~~~~~~~--~~~~~~~~~~l~~l~~D~~~~vr~~a~~al~~l~  515 (521)
                      ..++++++.                      ++.....  .......+|.|..++.|++++||..+.+++..+.
T Consensus       415 ~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~  488 (529)
T 1jdh_A          415 RRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELA  488 (529)
T ss_dssp             -----------CBTTBCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHT
T ss_pred             HHHhcccCchhhhccccHHHHHHHHHHHHHHHhcCchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHh
Confidence            876665543                      2221110  1223456788999999999999999999998865

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=99.84  E-value=9.3e-19  Score=176.86  Aligned_cols=436  Identities=12%  Similarity=0.066  Sum_probs=305.0

Q ss_pred             HhhhhHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHHHhHHHHHHHhhcCCCCcchhhhhhhhhhhcCCCChHHHHHH
Q 009975           19 HVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTEL   98 (521)
Q Consensus        19 ~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~p~i~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~l   98 (521)
                      ......+.+-++++++.+|-.|+++++.+..    ..+.+.++|.+.+...+.+..+|..|+..+..++...++. ...+
T Consensus       106 ~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~----~~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~-v~~~  180 (618)
T 1w63_A          106 LLMTNCIKNDLNHSTQFVQGLALCTLGCMGS----SEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPEL-MEMF  180 (618)
T ss_dssp             HHHHHHHHHHHSCSSSHHHHHHHHHHHHHCC----HHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGG-GGGG
T ss_pred             HHHHHHHHHhcCCCCHhHHHHHHHHHHhcCC----HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHH-HHHH
Confidence            3456667777789999999999999999873    2455788898989888888899999988888888665543 4578


Q ss_pred             HHHHHHhcCCCChHHHHHHHHhHHHHHHhhCc-----hhhHHHHHHHHHHhhc-----------CCChhHHHHHHHHHHH
Q 009975           99 RSIYTQLCQDDMPMVRRSAASNLGKFAATVEP-----AHLKTDIMSIFEDLTQ-----------DDQDSVRLLAVEGCAA  162 (521)
Q Consensus        99 ~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~-----~~~~~~l~~~l~~l~~-----------d~~~~vr~~a~~~l~~  162 (521)
                      ++.+..++.|+++.|+..|+.+|..++...+.     ....+.+...+.++..           ..++..+...+++++.
T Consensus       181 ~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~  260 (618)
T 1w63_A          181 LPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRI  260 (618)
T ss_dssp             GGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHH
Confidence            88889999999999999999999998754321     0122333334444322           2467778888888888


Q ss_pred             HhhhcChhhhhhhhHHHHHHhc------CCCChHHHHHHHHHHHHHHHHhCCCc-cccchHHHHHHhcCCChHHHHHHHH
Q 009975          163 LGKLLEPQDCVAHILPVIVNFS------QDKSWRVRYMVANQLYELCEAVGPEP-TRMDLVPAYVRLLRDNEAEVRIAAA  235 (521)
Q Consensus       163 l~~~~~~~~~~~~l~~~l~~~~------~d~~~~vR~~~~~~l~~i~~~~~~~~-~~~~l~~~l~~~l~d~~~~vr~~a~  235 (521)
                      ++..-+  ...+.+.+++..++      ++.+..|...+++++..+    +... ......+.+..++.++++++|..|+
T Consensus       261 l~~~~~--~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l----~~~~~l~~~a~~~L~~~L~~~d~~vr~~aL  334 (618)
T 1w63_A          261 LGRNDD--DSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDI----KSESGLRVLAINILGRFLLNNDKNIRYVAL  334 (618)
T ss_dssp             HTTTCH--HHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHS----CCCHHHHHHHHHHHHHHHTCSSTTTHHHHH
T ss_pred             hCCCCH--HHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhc----CCCHHHHHHHHHHHHHHHhCCCCchHHHHH
Confidence            876421  22334555555443      334567888888877653    2111 1123567788889988999999999


Q ss_pred             HhHHHHHhhhCHHHHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccChHHHHHhHHHHHHHhhcCCChHHHHHHHHH
Q 009975          236 GKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISK  315 (521)
Q Consensus       236 ~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~  315 (521)
                      .+|..++...+  .......+.+...+.|++..+|..+++.+..++..-.    .+.+++.+...+.+.+.++|..++.+
T Consensus       335 ~~L~~i~~~~p--~~~~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~n----v~~iv~eL~~~l~~~d~e~r~~~v~~  408 (618)
T 1w63_A          335 TSLLKTVQTDH--NAVQRHRSTIVDCLKDLDVSIKRRAMELSFALVNGNN----IRGMMKELLYFLDSCEPEFKADCASG  408 (618)
T ss_dssp             HHHHHHHHHHH--HHHGGGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSSS----THHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred             HHHHHHHhhCH--HHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccccc----HHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            99999987532  2234455677778899999999999999999886433    24466777777778899999999999


Q ss_pred             HHHhhhhhchhhHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChhhhHHHHHHHHHHHcCC--CcHHHHHHHHHH
Q 009975          316 LDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQD--KVYSIRDAAANN  393 (521)
Q Consensus       316 l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d--~~~~vr~~a~~~  393 (521)
                      ++.++..+.+..  ...++.+.+++++....++..++..+..+....+.  .....++.+...+.+  ....+...++.+
T Consensus       409 I~~la~k~~~~~--~~~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~p~--l~~~~v~~L~~~l~~~~~~~~~~~~~~wi  484 (618)
T 1w63_A          409 IFLAAEKYAPSK--RWHIDTIMRVLTTAGSYVRDDAVPNLIQLITNSVE--MHAYTVQRLYKAILGDYSQQPLVQVAAWC  484 (618)
T ss_dssp             HHHHHHSSCCCH--HHHHHHHHHHHHHTGGGSCSSHHHHHHHHHHHSCS--THHHHHHHHHHHHHHCCSCSHHHHHHHHH
T ss_pred             HHHHHHHhCccH--HHHHHHHHHHHHhccchhHHHHHHHHHHHHhcChh--HHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence            999998765432  55678888877766655666566666666654332  234455555555553  234445578999


Q ss_pred             HHHHHHHhCHH---------HHHhhhHHHHHhhhc--CcchHHHHHHHHHHHHhhcccChHHHhhcHHHHHHhhcCCCCc
Q 009975          394 LKRLAEEFGPE---------WAMQHITPQVLEMIN--NPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVP  462 (521)
Q Consensus       394 l~~l~~~~~~~---------~~~~~l~~~l~~~l~--~~~~~~r~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~  462 (521)
                      +|++...+...         .....+++.+..+++  ..+..+|..++.++.++....+..  .+.+...+-....|.+.
T Consensus       485 lGEy~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vr~~~lta~~Kl~~~~~~~--~~~l~~~L~~~~~~~d~  562 (618)
T 1w63_A          485 IGEYGDLLVSGQCEEEEPIQVTEDEVLDILESVLISNMSTSVTRGYALTAIMKLSTRFTCT--VNRIKKVVSIYGSSIDV  562 (618)
T ss_dssp             HHHHHHHHTTCCCSSSCCCCCCHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHTTCSSC--HHHHHHHHHHHTTCSCH
T ss_pred             HhhhHHHhcccccccccccCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhCcch--HHHHHHHHHHhcCCCCH
Confidence            99998655210         011234555555554  568899999999999998766532  34455556666788999


Q ss_pred             hHHHHHHHHHHHHHh
Q 009975          463 NIKFNVAKVLQSLIP  477 (521)
Q Consensus       463 ~VR~~a~~~l~~~~~  477 (521)
                      +||..|...+..+..
T Consensus       563 evrdRA~~y~~ll~~  577 (618)
T 1w63_A          563 ELQQRAVEYNALFKK  577 (618)
T ss_dssp             HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHcC
Confidence            999999998877654

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=99.81  E-value=4.4e-17  Score=163.95  Aligned_cols=472  Identities=11%  Similarity=0.035  Sum_probs=295.7

Q ss_pred             HhhhhcCchhHHHHHHHHHHHHHHhhcChhHHHHhHHHHHHHhhcCCCCcchhhhhhhhhhhcCCCChHHHHHHHHHHHH
Q 009975           25 LETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQ  104 (521)
Q Consensus        25 l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~p~i~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~~l~~  104 (521)
                      +.+++.+++...|+.+--.+..+++.- + +..-..++.+.+=+++++..+|..|+..++.+.   .++....+.+.+.+
T Consensus        79 vvkl~~s~~~~~Krl~YL~l~~~~~~~-~-e~~~L~iN~l~kDl~~~n~~ir~lALr~L~~i~---~~e~~~~l~~~v~~  153 (621)
T 2vgl_A           79 AVNLLSSNRYTEKQIGYLFISVLVNSN-S-ELIRLINNAIKNDLASRNPTFMGLALHCIANVG---SREMAEAFAGEIPK  153 (621)
T ss_dssp             HHHGGGCSCHHHHHHHHHHHHHSCCCC-H-HHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHC---CHHHHHHHTTHHHH
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHccCC-c-HHHHHHHHHHHHhcCCCCHHHHHHHHHHhhccC---CHHHHHHHHHHHHH
Confidence            334556667777776666666655432 1 112233445544445666667777777776664   34456677777777


Q ss_pred             hc--CCCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcChh--hhhhhhHHHH
Q 009975          105 LC--QDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ--DCVAHILPVI  180 (521)
Q Consensus       105 l~--~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l  180 (521)
                      ++  .|.+|.||+.|+.++..+.+..++....+.+.+.+.+++.|.++.|+..|+.++..++..-+..  ...+.++..+
T Consensus       154 ~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~L  233 (621)
T 2vgl_A          154 ILVAGDTMDSVKQSAALCLLRLYRTSPDLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRL  233 (621)
T ss_dssp             HHHCSSSCHHHHHHHHHHHHHHHHHCGGGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHHTTHHHHHHHHH
T ss_pred             HHhCCCCCHHHHHHHHHHHHHHHHhChhhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence            77  7777888888888887777744321111256677777777777778777777777776543211  1122233333


Q ss_pred             HHhcCC-------------CChHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhc---CC-C----------hHHHHHH
Q 009975          181 VNFSQD-------------KSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLL---RD-N----------EAEVRIA  233 (521)
Q Consensus       181 ~~~~~d-------------~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l---~d-~----------~~~vr~~  233 (521)
                      .+++.+             +++-.+..+.+.+..++.. ++......+.+.+.+.+   .+ +          ...|...
T Consensus       234 ~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~-~d~~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~e  312 (621)
T 2vgl_A          234 SRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPP-EDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFE  312 (621)
T ss_dssp             HHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSC-SSHHHHHHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHH
T ss_pred             HHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHHHHhhccCcccccccccchHHHHHHH
Confidence            333211             1344555555554433210 00001112222222222   11 1          1255555


Q ss_pred             HHHhHHHHHhhhCHHHHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccChHHHHHhHHHHHHHhhc-CCChHHHHHH
Q 009975          234 AAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLK-DEFPDVRLNI  312 (521)
Q Consensus       234 a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~-d~~~~vr~~a  312 (521)
                      |+.++..+.   +.........+.+..++.++++.+|..++.++..++...+.........+.++.++. |++..||..+
T Consensus       313 a~~~i~~l~---~~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~~~~~~~~i~~~L~~d~d~~Ir~~a  389 (621)
T 2vgl_A          313 AISLIIHHD---SEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAVKTHIETVINALKTERDVSVRQRA  389 (621)
T ss_dssp             HHHHHHHHC---CCHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHHHHTTHHHHHHHHTTCCCHHHHHHH
T ss_pred             HHHHHHhcC---CcHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhccCCCHhHHHHH
Confidence            665555543   233445567777888888889999999999999998776533345566778888888 9999999999


Q ss_pred             HHHHHHhhhhhchhhHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChhhhHHHHHHHHHHHcCCCcHHHHHHHHH
Q 009975          313 ISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAAN  392 (521)
Q Consensus       313 ~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~  392 (521)
                      +..+..++..   +.+ +.++..+.+++.+.+...|..++..++.++..++++  ..+.+..++.++.+....+...+..
T Consensus       390 L~lL~~l~~~---~Nv-~~Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~~--~~~~v~~Ll~ll~~~~~~v~~ev~~  463 (621)
T 2vgl_A          390 VDLLYAMCDR---SNA-QQIVAEMLSYLETADYSIREEIVLKVAILAEKYAVD--YTWYVDTILNLIRIAGDYVSEEVWY  463 (621)
T ss_dssp             HHHHHHHCCH---HHH-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCSS--THHHHHHHHHHHHHHGGGSCSHHHH
T ss_pred             HHHHHHHcCh---hhH-HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCc--HHHHHHHHHHHHHhhcccchHHHHH
Confidence            9999888754   222 667788888888888999999999999998877654  3556677777776655455555555


Q ss_pred             HHHHHHHHhCHHHHHhhhHHHHHhhhcCcch--HHHHHHHHHHHHhhcccChHH-H-hhcHHHHHHhhcCCCCchHHHHH
Q 009975          393 NLKRLAEEFGPEWAMQHITPQVLEMINNPHY--LYRMTILRAISLLAPVMGSEI-T-CSRLLPVVINASKDRVPNIKFNV  468 (521)
Q Consensus       393 ~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~--~~r~~a~~~l~~l~~~~~~~~-~-~~~il~~l~~~l~d~~~~VR~~a  468 (521)
                      .+..++....  ......+..+.+.+.++..  .+-..+++.+|..+..+.... . ...++..+...+.+..+.||..+
T Consensus       464 ~l~~ii~~~~--~~~~~~~~~l~~~l~~~~~~~~li~~~~wilGEy~~~~~~~~~~~p~~~l~~l~~~~~~~~~~v~~~~  541 (621)
T 2vgl_A          464 RVIQIVINRD--DVQGYAAKTVFEALQAPACHENLVKVGGYILGEFGNLIAGDPRSSPLIQFNLLHSKFHLCSVPTRALL  541 (621)
T ss_dssp             HHHHHHGGGC--SCHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHTHHHHSSTTSCHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred             HHHHHHhCCh--hHHHHHHHHHHHHHcCccchHHHHHHHHHHhcchHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHH
Confidence            5555554322  1233455666677777643  444567799999876443211 1 12456667777778899999999


Q ss_pred             HHHHHHHHhhhchHHHHhhHHHHHHHhcC--CCCccHHHHHHHHHHHHH
Q 009975          469 AKVLQSLIPIVDQSMVEKTIRPCLVELTE--DPDVDVRFFATQAIQSID  515 (521)
Q Consensus       469 ~~~l~~~~~~~~~~~~~~~~~~~l~~l~~--D~~~~vr~~a~~al~~l~  515 (521)
                      +.++.++....+.  ..+.+...+.....  |.|.+||..|..-+.-+.
T Consensus       542 Lta~~Kl~~~~p~--~~~~i~~~l~~~~~~~~~d~evrdRA~~y~~Ll~  588 (621)
T 2vgl_A          542 LSTYIKFVNLFPE--VKATIQDVLRSDSQLKNADVELQQRAVEYLRLST  588 (621)
T ss_dssp             HHHHHHHHHHCGG--GHHHHHHHHSSHHHHSCSSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHChH--HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHc
Confidence            9999998776432  33556666666666  999999999998776554

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=99.81  E-value=3.9e-17  Score=161.59  Aligned_cols=375  Identities=12%  Similarity=0.102  Sum_probs=263.7

Q ss_pred             HHHHHhhcCCChhHHHHHHHHHHHHhhhcCh----hhhhhhhHHHHHHhcC-CCChHHHHHHHHHHHHHHHHhC---CCc
Q 009975          139 SIFEDLTQDDQDSVRLLAVEGCAALGKLLEP----QDCVAHILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVG---PEP  210 (521)
Q Consensus       139 ~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~~~~-d~~~~vR~~~~~~l~~i~~~~~---~~~  210 (521)
                      +-+.+.+++++...+..|...+..+.+.-..    .....-++|.+.++++ ++++.++..++.+|+.++..-.   ...
T Consensus        60 ~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~v  139 (510)
T 3ul1_B           60 EDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAV  139 (510)
T ss_dssp             HHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence            3344455666677777777777666543211    1223346777777775 4557788888888888763111   112


Q ss_pred             cccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCH--H-HHHHhhhHHHHHhccCCc-----HHHHHHHHHHHHcccc
Q 009975          211 TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP--E-LAIQHILPCVKELSSDSS-----QHVRSALASVIMGMAP  282 (521)
Q Consensus       211 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~--~-~~~~~~~~~l~~~~~d~~-----~~vr~~~~~~l~~i~~  282 (521)
                      .....+|.+.+++++++..||..|+.+|+.++...+.  . ......++.+..++.+++     ..+...++.++..++.
T Consensus       140 v~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~  219 (510)
T 3ul1_B          140 VDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCR  219 (510)
T ss_dssp             HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHC
T ss_pred             HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhh
Confidence            2346789999999999999999999999988764321  1 122335677777776543     3456677777777765


Q ss_pred             cc---ChHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchh---hHhhhHHHHHHHHhcCCChHHHHHHHHHhH
Q 009975          283 LL---GKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID---LLSQSLLPAIVELAEDRHWRVRLAIIEYIP  356 (521)
Q Consensus       283 ~~---~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~  356 (521)
                      ..   ........++|.+..++.+++++++..++.++..++..-...   .....++|.+.+++.++++.++..++.+++
T Consensus       220 ~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~  299 (510)
T 3ul1_B          220 NKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIG  299 (510)
T ss_dssp             CCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHH
T ss_pred             cccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHH
Confidence            33   222234678999999999999999999999999987532211   123467899999999999999999999998


Q ss_pred             HHHhhhChh---hhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCH---HHHHhhhHHHHHhhhcCcchHHHHHHH
Q 009975          357 LLASQLGVG---FFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP---EWAMQHITPQVLEMINNPHYLYRMTIL  430 (521)
Q Consensus       357 ~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~~~~~~~r~~a~  430 (521)
                      .++..-...   ......+|.+..++++++..+|..|+.+++.++.....   ......++|.+..++.+.+..+|..|+
T Consensus       300 nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa  379 (510)
T 3ul1_B          300 NIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAA  379 (510)
T ss_dssp             HHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHH
T ss_pred             HhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHH
Confidence            886532211   12233567778889999999999999999998642211   123456899999999999999999999


Q ss_pred             HHHHHhhcccChHH----HhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhc----hHHH-----HhhHHHHHHHhcC
Q 009975          431 RAISLLAPVMGSEI----TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD----QSMV-----EKTIRPCLVELTE  497 (521)
Q Consensus       431 ~~l~~l~~~~~~~~----~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~----~~~~-----~~~~~~~l~~l~~  497 (521)
                      ++++.++.....+.    .....++.+..+++.+++.++..++.+|..+.+...    .+.+     ....+..+..|..
T Consensus       380 ~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~  459 (510)
T 3ul1_B          380 WAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQR  459 (510)
T ss_dssp             HHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGG
T ss_pred             HHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHc
Confidence            99999987555443    235678999999999999999999999999876432    1122     1234677888888


Q ss_pred             CCCccHHHHHHHHHHH
Q 009975          498 DPDVDVRFFATQAIQS  513 (521)
Q Consensus       498 D~~~~vr~~a~~al~~  513 (521)
                      +++.+|+..|.+-+.+
T Consensus       460 ~~n~~i~~~A~~iie~  475 (510)
T 3ul1_B          460 HENESVYKASLNLIEK  475 (510)
T ss_dssp             CSSHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHH
Confidence            8999998888777654

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=99.81  E-value=1.3e-16  Score=158.76  Aligned_cols=375  Identities=11%  Similarity=0.102  Sum_probs=264.5

Q ss_pred             HHHHHhhcCCChhHHHHHHHHHHHHhhhcCh----hhhhhhhHHHHHHhcC-CCChHHHHHHHHHHHHHHHHhC---CCc
Q 009975          139 SIFEDLTQDDQDSVRLLAVEGCAALGKLLEP----QDCVAHILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVG---PEP  210 (521)
Q Consensus       139 ~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~~~~-d~~~~vR~~~~~~l~~i~~~~~---~~~  210 (521)
                      +.+.+.+.+++...+..|+..+..+...-..    ......++|.+..++. +.++.++..++.+|..++..-.   ...
T Consensus        79 ~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~v  158 (529)
T 3tpo_A           79 EDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAV  158 (529)
T ss_dssp             HHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            4444555666666676676666665433211    1223446777777664 4567788888888887764211   112


Q ss_pred             cccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCH--H-HHHHhhhHHHHHhccCCc-----HHHHHHHHHHHHcccc
Q 009975          211 TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP--E-LAIQHILPCVKELSSDSS-----QHVRSALASVIMGMAP  282 (521)
Q Consensus       211 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~--~-~~~~~~~~~l~~~~~d~~-----~~vr~~~~~~l~~i~~  282 (521)
                      .....+|.+.+++.+++..+|..|+.+|+.++..-+.  . ......++.+..++.+++     ..+...+++++..++.
T Consensus       159 v~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~  238 (529)
T 3tpo_A          159 VDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCR  238 (529)
T ss_dssp             HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHC
T ss_pred             HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHh
Confidence            2356789999999999999999999999988764211  1 122335777777776543     3456677777777765


Q ss_pred             ccC---hHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhch---hhHhhhHHHHHHHHhcCCChHHHHHHHHHhH
Q 009975          283 LLG---KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---DLLSQSLLPAIVELAEDRHWRVRLAIIEYIP  356 (521)
Q Consensus       283 ~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~  356 (521)
                      ...   .......++|.+..++.+++++++..++.++..+...-..   ......++|.+.+++.++++.++..++.+++
T Consensus       239 ~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~  318 (529)
T 3tpo_A          239 NKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIG  318 (529)
T ss_dssp             CCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHH
T ss_pred             cccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHH
Confidence            332   2233467899999999999999999999999988753221   1123567899999999999999999999998


Q ss_pred             HHHhhhCh---hhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCH---HHHHhhhHHHHHhhhcCcchHHHHHHH
Q 009975          357 LLASQLGV---GFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP---EWAMQHITPQVLEMINNPHYLYRMTIL  430 (521)
Q Consensus       357 ~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~~~~~~~r~~a~  430 (521)
                      .++..-..   .......+|.+..++++++..+|..|+.+|+.++.....   ......++|.+..++.+++..+|..|+
T Consensus       319 nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~  398 (529)
T 3tpo_A          319 NIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAA  398 (529)
T ss_dssp             HHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHH
T ss_pred             HHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHH
Confidence            88753221   112234677888999999999999999999998753211   123456899999999999999999999


Q ss_pred             HHHHHhhcccChHH----HhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhc----hHHHH-----hhHHHHHHHhcC
Q 009975          431 RAISLLAPVMGSEI----TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD----QSMVE-----KTIRPCLVELTE  497 (521)
Q Consensus       431 ~~l~~l~~~~~~~~----~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~----~~~~~-----~~~~~~l~~l~~  497 (521)
                      ++++.++.....+.    .....++.+..+|..+++.++..++.+|..+.....    .+.+.     ...+..+..|..
T Consensus       399 ~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~  478 (529)
T 3tpo_A          399 WAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQR  478 (529)
T ss_dssp             HHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGG
T ss_pred             HHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHc
Confidence            99999987544443    235678999999999999999999999999876432    12221     223566777888


Q ss_pred             CCCccHHHHHHHHHHH
Q 009975          498 DPDVDVRFFATQAIQS  513 (521)
Q Consensus       498 D~~~~vr~~a~~al~~  513 (521)
                      +++.+|+..|..-+.+
T Consensus       479 ~~n~~i~~~A~~iie~  494 (529)
T 3tpo_A          479 HENESVYKASLNLIEK  494 (529)
T ss_dssp             CSSHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHH
Confidence            8999999888776654

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.80  E-value=4.6e-18  Score=155.09  Aligned_cols=254  Identities=20%  Similarity=0.132  Sum_probs=187.7

Q ss_pred             chHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccChHHHHHhH
Q 009975          214 DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQL  293 (521)
Q Consensus       214 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l  293 (521)
                      .-++.+.+.++|+++.+|..|+.+|+.+..        +..++.+..++.|+++.+|..++.+++.+...-   .....+
T Consensus        23 ~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~--------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~---~~~~~l   91 (280)
T 1oyz_A           23 LNDDELFRLLDDHNSLKRISSARVLQLRGG--------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICK---KCEDNV   91 (280)
T ss_dssp             SCHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCT---TTHHHH
T ss_pred             hhHHHHHHHHHcCCHHHHHHHHHHHHccCC--------chHHHHHHHHHcCCCHHHHHHHHHHHHHhcccc---ccchHH
Confidence            346778888888888888888888887652        235677777888888888988888888875321   113345


Q ss_pred             HHHHH-HhhcCCChHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChhhhHHHHH
Q 009975          294 LPIFL-SLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLG  372 (521)
Q Consensus       294 ~~~l~-~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~  372 (521)
                      ++.+. .+++|+++.||..++.+|+.+....+.  ....++|.+...++|+++.+|..++.+++.+..        +..+
T Consensus        92 ~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~--~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~--------~~~~  161 (280)
T 1oyz_A           92 FNILNNMALNDKSACVRATAIESTAQRCKKNPI--YSPKIVEQSQITAFDKSTNVRRATAFAISVIND--------KATI  161 (280)
T ss_dssp             HHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGG--GHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-----------CCH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCc--ccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC--------HHHH
Confidence            66665 356788899999999999887643221  125678888888899999999999888876543        2256


Q ss_pred             HHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChHHHhhcHHHH
Q 009975          373 ALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPV  452 (521)
Q Consensus       373 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~il~~  452 (521)
                      |.+..+++|+++.||..++.+++.+..  .    ....++.+...++|+++.+|..++.+++.+..        +..+|.
T Consensus       162 ~~L~~~l~d~~~~vr~~a~~aL~~~~~--~----~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~~--------~~~~~~  227 (280)
T 1oyz_A          162 PLLINLLKDPNGDVRNWAAFAININKY--D----NSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKD--------KRVLSV  227 (280)
T ss_dssp             HHHHHHHTCSSHHHHHHHHHHHHHHTC--C----CHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTC--------GGGHHH
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHhhcc--C----cHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCC--------HhhHHH
Confidence            777888899999999999999887621  1    23567888888899999999999999988862        456778


Q ss_pred             HHhhcCCCCchHHHHHHHHHHHHHhhhchHHHHhhHHHHHHHhcC-CCCccHHHHHHHHHH
Q 009975          453 VINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTE-DPDVDVRFFATQAIQ  512 (521)
Q Consensus       453 l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~~~~~~~~l~~l~~-D~~~~vr~~a~~al~  512 (521)
                      +...+.|+.  ||..++.+|+.+..        +..+|.|.+++. +++++++..+..+++
T Consensus       228 L~~~l~d~~--vr~~a~~aL~~i~~--------~~~~~~L~~~l~~~~~~~~~~~~~~~l~  278 (280)
T 1oyz_A          228 LCDELKKNT--VYDDIIEAAGELGD--------KTLLPVLDTMLYKFDDNEIITSAIDKLK  278 (280)
T ss_dssp             HHHHHTSSS--CCHHHHHHHHHHCC--------GGGHHHHHHHHTTSSCCHHHHHHHHHHT
T ss_pred             HHHHhcCcc--HHHHHHHHHHhcCc--------hhhhHHHHHHHhcCCCcHHHHHHHHHhh
Confidence            888888754  89999999888754        356777777654 467788877777664

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=99.80  E-value=8e-17  Score=159.35  Aligned_cols=378  Identities=10%  Similarity=0.072  Sum_probs=279.9

Q ss_pred             HHHHHhcCCCChHHHHHHHHhHHHHHHhhCch----hhHHHHHHHHHHhhc-CCChhHHHHHHHHHHHHhhhcChh---h
Q 009975          100 SIYTQLCQDDMPMVRRSAASNLGKFAATVEPA----HLKTDIMSIFEDLTQ-DDQDSVRLLAVEGCAALGKLLEPQ---D  171 (521)
Q Consensus       100 ~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~----~~~~~l~~~l~~l~~-d~~~~vr~~a~~~l~~l~~~~~~~---~  171 (521)
                      +.+.+.+.++++.++..|+..+..+.+.-..+    .+...++|.+.+++. ++++.++..|+.+|.+++..-+..   .
T Consensus        60 ~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~v  139 (510)
T 3ul1_B           60 EDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAV  139 (510)
T ss_dssp             HHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence            44555667788999999999999887543322    244567898988886 456789999999999998653221   1


Q ss_pred             hhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHh---CCCccccchHHHHHHhcCCCh-----HHHHHHHHHhHHHHHh
Q 009975          172 CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAV---GPEPTRMDLVPAYVRLLRDNE-----AEVRIAAAGKVTKFCR  243 (521)
Q Consensus       172 ~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~---~~~~~~~~l~~~l~~~l~d~~-----~~vr~~a~~~l~~l~~  243 (521)
                      ...-.+|.+..++.+++..+|..++.+|+.++..-   .........++.+..++.+++     ..++..+..++..+..
T Consensus       140 v~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~  219 (510)
T 3ul1_B          140 VDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCR  219 (510)
T ss_dssp             HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHC
T ss_pred             HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhh
Confidence            22347899999999999999999999999997421   111223457888888887654     2455667777777766


Q ss_pred             hhC---HHHHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccChH---HHHHhHHHHHHHhhcCCChHHHHHHHHHHH
Q 009975          244 ILN---PELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD---ATIEQLLPIFLSLLKDEFPDVRLNIISKLD  317 (521)
Q Consensus       244 ~~~---~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~  317 (521)
                      .-.   .......++|.+..++.+.++.++..+++++..++..-...   .....++|.+..++.+.+..++..++.+++
T Consensus       220 ~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~  299 (510)
T 3ul1_B          220 NKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIG  299 (510)
T ss_dssp             CCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHH
T ss_pred             cccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHH
Confidence            432   12334568899999999999999999999999998644321   123357899999999999999999999999


Q ss_pred             Hhhhhhch---hhHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhCh---hhhHHHHHHHHHHHcCCCcHHHHHHHH
Q 009975          318 QVNQVIGI---DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---GFFDDKLGALCMQWLQDKVYSIRDAAA  391 (521)
Q Consensus       318 ~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~  391 (521)
                      .++..-..   ..+....++.+..++.+++..+|..++.+++.++.....   ......++|.+..++++.+..+|..|+
T Consensus       300 nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa  379 (510)
T 3ul1_B          300 NIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAA  379 (510)
T ss_dssp             HHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHH
T ss_pred             HhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHH
Confidence            98653221   112345677888888999999999999999988754222   122345789999999999999999999


Q ss_pred             HHHHHHHHHhCHHH----HHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcc---cChH-HH-----hhcHHHHHHhhcC
Q 009975          392 NNLKRLAEEFGPEW----AMQHITPQVLEMINNPHYLYRMTILRAISLLAPV---MGSE-IT-----CSRLLPVVINASK  458 (521)
Q Consensus       392 ~~l~~l~~~~~~~~----~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~---~~~~-~~-----~~~il~~l~~~l~  458 (521)
                      .+|..++.....+.    .....++.|.+++.+++..++..+++++..+...   .+.. .+     ....+..+..+..
T Consensus       380 ~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~  459 (510)
T 3ul1_B          380 WAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQR  459 (510)
T ss_dssp             HHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGG
T ss_pred             HHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHc
Confidence            99999886544332    2456799999999999999999999999988753   2222 12     1234667777888


Q ss_pred             CCCchHHHHHHHHHHHHHh
Q 009975          459 DRVPNIKFNVAKVLQSLIP  477 (521)
Q Consensus       459 d~~~~VR~~a~~~l~~~~~  477 (521)
                      +++..|+..|.+.+.....
T Consensus       460 ~~n~~i~~~A~~iie~yf~  478 (510)
T 3ul1_B          460 HENESVYKASLNLIEKYFS  478 (510)
T ss_dssp             CSSHHHHHHHHHHHHHHCC
T ss_pred             CCCHHHHHHHHHHHHHHCC
Confidence            8999999999998877653

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=99.80  E-value=2.3e-16  Score=156.97  Aligned_cols=379  Identities=11%  Similarity=0.080  Sum_probs=281.9

Q ss_pred             HHHHHHhcCCCChHHHHHHHHhHHHHHHhhCc----hhhHHHHHHHHHHhhc-CCChhHHHHHHHHHHHHhhhcChh---
Q 009975           99 RSIYTQLCQDDMPMVRRSAASNLGKFAATVEP----AHLKTDIMSIFEDLTQ-DDQDSVRLLAVEGCAALGKLLEPQ---  170 (521)
Q Consensus        99 ~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~l~~-d~~~~vr~~a~~~l~~l~~~~~~~---  170 (521)
                      ++.+.+.+.++++..+..++..+..+...-..    ..+...++|.+.+++. ++++.++..|+.+|.+++..-+..   
T Consensus        78 l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~  157 (529)
T 3tpo_A           78 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKA  157 (529)
T ss_dssp             HHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            45566667788899999999999887654332    2245567888888885 556889999999999998764322   


Q ss_pred             hhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHh---CCCccccchHHHHHHhcCCCh-----HHHHHHHHHhHHHHH
Q 009975          171 DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAV---GPEPTRMDLVPAYVRLLRDNE-----AEVRIAAAGKVTKFC  242 (521)
Q Consensus       171 ~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~---~~~~~~~~l~~~l~~~l~d~~-----~~vr~~a~~~l~~l~  242 (521)
                      ......+|.+..++.+++..+|..++.+|+.++..-   .........++.+..++.+++     ..+...+..++..++
T Consensus       158 vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~  237 (529)
T 3tpo_A          158 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLC  237 (529)
T ss_dssp             HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHH
Confidence            123447899999999999999999999999997421   111223457888888887654     245566777777776


Q ss_pred             hhhCH---HHHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccChH---HHHHhHHHHHHHhhcCCChHHHHHHHHHH
Q 009975          243 RILNP---ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD---ATIEQLLPIFLSLLKDEFPDVRLNIISKL  316 (521)
Q Consensus       243 ~~~~~---~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l  316 (521)
                      ..-.+   ......++|.+..++.+.+..++..+++++..++......   .....++|.+..++.++++.++..++.++
T Consensus       238 ~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL  317 (529)
T 3tpo_A          238 RNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAI  317 (529)
T ss_dssp             CCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHH
T ss_pred             hcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHH
Confidence            64322   2334668899999999999999999999999887644321   12345789999999999999999999999


Q ss_pred             HHhhhhhch---hhHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhCh---hhhHHHHHHHHHHHcCCCcHHHHHHH
Q 009975          317 DQVNQVIGI---DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---GFFDDKLGALCMQWLQDKVYSIRDAA  390 (521)
Q Consensus       317 ~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a  390 (521)
                      +.++..-..   ..+....++.+..++.+++..+|..++.+++.++..-..   ......++|.+..++.+.+..+|..|
T Consensus       318 ~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A  397 (529)
T 3tpo_A          318 GNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAA  397 (529)
T ss_dssp             HHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHH
T ss_pred             HHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHH
Confidence            998753221   123356788899999999999999999999998764322   12234578999999999999999999


Q ss_pred             HHHHHHHHHHhCHHH----HHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcc---cCh-HHHh-----hcHHHHHHhhc
Q 009975          391 ANNLKRLAEEFGPEW----AMQHITPQVLEMINNPHYLYRMTILRAISLLAPV---MGS-EITC-----SRLLPVVINAS  457 (521)
Q Consensus       391 ~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~---~~~-~~~~-----~~il~~l~~~l  457 (521)
                      +.+|..++.....+.    .....++.|.+++.+++..++..++.++..+...   .+. +.+.     ...+..+..+.
T Consensus       398 ~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq  477 (529)
T 3tpo_A          398 AWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQ  477 (529)
T ss_dssp             HHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGG
T ss_pred             HHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHH
Confidence            999999986544332    2356799999999999999999999999998752   222 2221     23466777788


Q ss_pred             CCCCchHHHHHHHHHHHHHh
Q 009975          458 KDRVPNIKFNVAKVLQSLIP  477 (521)
Q Consensus       458 ~d~~~~VR~~a~~~l~~~~~  477 (521)
                      .+++..|+..|.+.+.....
T Consensus       478 ~~~n~~i~~~A~~iie~yf~  497 (529)
T 3tpo_A          478 RHENESVYKASLNLIEKYFS  497 (529)
T ss_dssp             GCSSHHHHHHHHHHHHHHC-
T ss_pred             cCCCHHHHHHHHHHHHHHCC
Confidence            89999999999988876643

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.79  E-value=1.3e-17  Score=152.07  Aligned_cols=253  Identities=15%  Similarity=0.068  Sum_probs=192.9

Q ss_pred             hHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhhh
Q 009975          176 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHIL  255 (521)
Q Consensus       176 l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~  255 (521)
                      -++.+...++|+++.+|..++..|+.+.        .+..++.+.++++|+++.+|..|+.+|+.+...-.   ....++
T Consensus        24 ~i~~L~~~L~~~~~~vr~~A~~~L~~~~--------~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~---~~~~l~   92 (280)
T 1oyz_A           24 NDDELFRLLDDHNSLKRISSARVLQLRG--------GQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKK---CEDNVF   92 (280)
T ss_dssp             CHHHHHHHTTCSSHHHHHHHHHHHHHHC--------CHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTT---THHHHH
T ss_pred             hHHHHHHHHHcCCHHHHHHHHHHHHccC--------CchHHHHHHHHHcCCCHHHHHHHHHHHHHhccccc---cchHHH
Confidence            4567777888899999999999988764        24578888999999999999999999988653211   123355


Q ss_pred             HHHH-HhccCCcHHHHHHHHHHHHccccccChHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchhhHhhhHHH
Q 009975          256 PCVK-ELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLP  334 (521)
Q Consensus       256 ~~l~-~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~  334 (521)
                      +.+. .+.+|+++.||..++.+++.+....+  .....++|.+...++|+++.||..++.+++.+..        ...+|
T Consensus        93 ~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~--~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~--------~~~~~  162 (280)
T 1oyz_A           93 NILNNMALNDKSACVRATAIESTAQRCKKNP--IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND--------KATIP  162 (280)
T ss_dssp             HHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG--GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-----------CCHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhccCC--cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC--------HHHHH
Confidence            5555 35678899999999999988753221  1234678888899999999999999999988754        35688


Q ss_pred             HHHHHhcCCChHHHHHHHHHhHHHHhhhChhhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHHHHHhhhHHHH
Q 009975          335 AIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQV  414 (521)
Q Consensus       335 ~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l  414 (521)
                      .+.+.+.|+++.+|..++.+++.+...      .+..+|.+...++|+++.||..++.+|+.+.        ....+|.+
T Consensus       163 ~L~~~l~d~~~~vr~~a~~aL~~~~~~------~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~--------~~~~~~~L  228 (280)
T 1oyz_A          163 LLINLLKDPNGDVRNWAAFAININKYD------NSDIRDCFVEMLQDKNEEVRIEAIIGLSYRK--------DKRVLSVL  228 (280)
T ss_dssp             HHHHHHTCSSHHHHHHHHHHHHHHTCC------CHHHHHHHHHHTTCSCHHHHHHHHHHHHHTT--------CGGGHHHH
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHhhccC------cHHHHHHHHHHhcCCCHHHHHHHHHHHHHhC--------CHhhHHHH
Confidence            888888999999999999998776311      2457788888999999999999999998764        24577888


Q ss_pred             HhhhcCcchHHHHHHHHHHHHhhcccChHHHhhcHHHHHHhhcCC-CCchHHHHHHHHHH
Q 009975          415 LEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKD-RVPNIKFNVAKVLQ  473 (521)
Q Consensus       415 ~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d-~~~~VR~~a~~~l~  473 (521)
                      ...++|++  +|..++.+++.+..        +..+|.+..++.+ +++.++..+++.+.
T Consensus       229 ~~~l~d~~--vr~~a~~aL~~i~~--------~~~~~~L~~~l~~~~~~~~~~~~~~~l~  278 (280)
T 1oyz_A          229 CDELKKNT--VYDDIIEAAGELGD--------KTLLPVLDTMLYKFDDNEIITSAIDKLK  278 (280)
T ss_dssp             HHHHTSSS--CCHHHHHHHHHHCC--------GGGHHHHHHHHTTSSCCHHHHHHHHHHT
T ss_pred             HHHhcCcc--HHHHHHHHHHhcCc--------hhhhHHHHHHHhcCCCcHHHHHHHHHhh
Confidence            88888765  88889999988854        3577888888765 56777777777664

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=99.77  E-value=8.9e-15  Score=156.28  Aligned_cols=486  Identities=10%  Similarity=0.085  Sum_probs=296.5

Q ss_pred             hhhhHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHHHhHHHHHHHhhcCCCCcchhhhhhhhhhh----cC------C
Q 009975           20 VLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIA----YP------S   89 (521)
Q Consensus        20 ~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~p~i~~~~~~~~~~~r~~~~~~~~~~----~~------~   89 (521)
                      .+...|.... ++|..+|  |...|..+-+ . | +....++..+.  ..+.+..+|..|...+...    +.      .
T Consensus         6 ~l~~~L~~~~-spd~~~r--Ae~~L~~~~~-~-p-~~~~~L~~il~--~~~~~~~vR~~A~i~lkn~i~~~w~~~~~~~~   77 (960)
T 1wa5_C            6 TVAKFLAESV-IASTAKT--SERNLRQLET-Q-D-GFGLTLLHVIA--STNLPLSTRLAGALFFKNFIKRKWVDENGNHL   77 (960)
T ss_dssp             HHHHHHHHTT-SGGGHHH--HHHHHHHHHT-S-T-THHHHHHHHHH--CTTSCHHHHHHHHHHHHHHHHHHSBCSSSCBS
T ss_pred             HHHHHHHHhc-CCCHHHH--HHHHHHHhhc-C-C-CHHHHHHHHHh--cCCCCHHHHHHHHHHHHHHHHhcCCCcccCCC
Confidence            4566666643 5677888  8888876622 2 2 22223333221  1123456787776555432    32      4


Q ss_pred             CChHHHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcCh
Q 009975           90 APDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP  169 (521)
Q Consensus        90 ~~~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~  169 (521)
                      ++++.+..+...+...+.++++.||..++.++..++..-.+ ..|+.++|.+.+.+++++...+..++.++..+.+....
T Consensus        78 l~~~~k~~ik~~ll~~l~~~~~~ir~~l~~~ia~ia~~d~p-~~Wp~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~~  156 (960)
T 1wa5_C           78 LPANNVELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFP-DRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRP  156 (960)
T ss_dssp             SCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHST-TTCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTT
T ss_pred             CCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCc-cchhHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            67666777777666665555699999999999999987543 57899999999999888888899999999999886532


Q ss_pred             ----hhh-------hhhhH----HHHHH---hcCCCCh---HHH------HHHHHHHHHHHHHhCCCcc---ccchHHHH
Q 009975          170 ----QDC-------VAHIL----PVIVN---FSQDKSW---RVR------YMVANQLYELCEAVGPEPT---RMDLVPAY  219 (521)
Q Consensus       170 ----~~~-------~~~l~----~~l~~---~~~d~~~---~vR------~~~~~~l~~i~~~~~~~~~---~~~l~~~l  219 (521)
                          +..       .....    .++..   .+.+...   .+|      ..+++++..+...--++..   .....+.+
T Consensus       157 ~~~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~~~~~~~~  236 (960)
T 1wa5_C          157 LFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGIF  236 (960)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTHHHHHHHH
T ss_pred             hhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH
Confidence                111       11122    22222   2444321   233      2244444332210001111   12344555


Q ss_pred             HHhcCC-----------C----hHHHHHHHHHhHHHHHhhhCHH--HHHHhhhHHHHHhcc-----CCcHHHHHHHHHHH
Q 009975          220 VRLLRD-----------N----EAEVRIAAAGKVTKFCRILNPE--LAIQHILPCVKELSS-----DSSQHVRSALASVI  277 (521)
Q Consensus       220 ~~~l~d-----------~----~~~vr~~a~~~l~~l~~~~~~~--~~~~~~~~~l~~~~~-----d~~~~vr~~~~~~l  277 (521)
                      .+.+..           .    .+.+|+.+++++..+.+..+..  .+.+.+++.+.+.+.     ..+..++..+++.+
T Consensus       237 ~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl  316 (960)
T 1wa5_C          237 HKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSFL  316 (960)
T ss_dssp             HHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHH
T ss_pred             HHHHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHH
Confidence            554421           1    1468899999999888765432  223334444444332     45678888888888


Q ss_pred             Hcccccc------ChHHHHHhHH-HHHHHhhc-----------------------CCChHHHHHHHHHHHHhhhhhchhh
Q 009975          278 MGMAPLL------GKDATIEQLL-PIFLSLLK-----------------------DEFPDVRLNIISKLDQVNQVIGIDL  327 (521)
Q Consensus       278 ~~i~~~~------~~~~~~~~l~-~~l~~~l~-----------------------d~~~~vr~~a~~~l~~~~~~~~~~~  327 (521)
                      ..++..-      ....+...++ +.+...+.                       ++....|.+|...+..++...+ +.
T Consensus       317 ~~~~~~~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~-~~  395 (960)
T 1wa5_C          317 TAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNE-VL  395 (960)
T ss_dssp             HHHHTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCH-HH
T ss_pred             HHHhCcHhHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcc-hh
Confidence            7765421      1112233444 44444331                       1123578899999999998888 43


Q ss_pred             HhhhHHHHHHHHhc------CCChHHHHHHHHHhHHHHhhh-----Chh------hhHHHHHHHHHHHcCCC---cHHHH
Q 009975          328 LSQSLLPAIVELAE------DRHWRVRLAIIEYIPLLASQL-----GVG------FFDDKLGALCMQWLQDK---VYSIR  387 (521)
Q Consensus       328 ~~~~~~~~l~~~~~------~~~~~vr~~~~~~l~~l~~~~-----~~~------~~~~~l~~~l~~~l~d~---~~~vr  387 (521)
                      +.+.+++.+.+.+.      +.+|+.|.+++.+++.++...     |..      .+.+.+...+...++|+   ++.||
T Consensus       396 v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr  475 (960)
T 1wa5_C          396 VTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILR  475 (960)
T ss_dssp             HHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHH
T ss_pred             HHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceeh
Confidence            44677777766665      688999999999999998642     111      23333344455556777   89999


Q ss_pred             HHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccC----------hHH---HhhcHHHHHH
Q 009975          388 DAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMG----------SEI---TCSRLLPVVI  454 (521)
Q Consensus       388 ~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~----------~~~---~~~~il~~l~  454 (521)
                      ..++.+++.+...+..+ ....+++.+...+.|++..+|..|+.++..++....          .+.   +.+.+++.++
T Consensus       476 ~~a~~~lg~~~~~~~~~-~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~  554 (960)
T 1wa5_C          476 VDAIKYIYTFRNQLTKA-QLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLI  554 (960)
T ss_dssp             HHHHHHHHHTGGGSCHH-HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhCCHH-HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHH
Confidence            99999999999877544 467788999998999999999999999999887422          222   3456777777


Q ss_pred             hhcCCCC---c--hHHHHHHHHHHHHHhhhchH--HHHhhHHH----HHHHhcC-CCCccHHHHHHHHHHHHHH
Q 009975          455 NASKDRV---P--NIKFNVAKVLQSLIPIVDQS--MVEKTIRP----CLVELTE-DPDVDVRFFATQAIQSIDH  516 (521)
Q Consensus       455 ~~l~d~~---~--~VR~~a~~~l~~~~~~~~~~--~~~~~~~~----~l~~l~~-D~~~~vr~~a~~al~~l~~  516 (521)
                      .+++...   .  .....+..+++.++..++.+  .+...+.+    .+....+ ..++..+..+.++++.+..
T Consensus       555 ~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~  628 (960)
T 1wa5_C          555 ALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILN  628 (960)
T ss_dssp             HHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHh
Confidence            7776541   1  13357888888887766532  12223333    3333333 3455666666777776654

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=99.74  E-value=1.5e-15  Score=152.80  Aligned_cols=442  Identities=11%  Similarity=0.065  Sum_probs=291.9

Q ss_pred             hhHHhhhhHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHHHhHHHHHHHhh--cCCCCcchhhhhhhhhhhcCCCChH
Q 009975           16 EHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLA--AGEWFTARVSACGLFHIAYPSAPDI   93 (521)
Q Consensus        16 ~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~p~i~~~~--~~~~~~~r~~~~~~~~~~~~~~~~~   93 (521)
                      +........+++=++++++.+|-.|+++++.+..   + .+.+.+.|.+.+.+  .+.+..+|..|+..+..++...++.
T Consensus       107 e~~~L~iN~l~kDl~~~n~~ir~lALr~L~~i~~---~-e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~  182 (621)
T 2vgl_A          107 ELIRLINNAIKNDLASRNPTFMGLALHCIANVGS---R-EMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDL  182 (621)
T ss_dssp             HHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHCC---H-HHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGG
T ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHhhccCC---H-HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhh
Confidence            4444456677777779999999999999998854   3 45678888888888  7888899988888877777654443


Q ss_pred             HHH--HHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCch--hhHHHHHHHHHHhhcCC-------------ChhHHHHH
Q 009975           94 LKT--ELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPA--HLKTDIMSIFEDLTQDD-------------QDSVRLLA  156 (521)
Q Consensus        94 ~~~--~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~l~~d~-------------~~~vr~~a  156 (521)
                       ..  .+.+.+.+++.|+++.|+.+|+..+..++..-+..  ...+.+...+.+++.+.             ++..+...
T Consensus       183 -~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~i  261 (621)
T 2vgl_A          183 -VPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKL  261 (621)
T ss_dssp             -CCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHH
T ss_pred             -cCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHH
Confidence             33  68889999999999999999999999998754321  13344555555554321             45566666


Q ss_pred             HHHHHHHhhhcChhhhhhhhHHHHHHhc---CC-C--------C--hHHHHHHHHHHHHHHHHhCCCccccchHHHHHHh
Q 009975          157 VEGCAALGKLLEPQDCVAHILPVIVNFS---QD-K--------S--WRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRL  222 (521)
Q Consensus       157 ~~~l~~l~~~~~~~~~~~~l~~~l~~~~---~d-~--------~--~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~  222 (521)
                      ++.+..++..- +......+.+.+...+   .+ +        +  ..|-..+++++..+.   +...........+..+
T Consensus       262 l~ll~~~~~~~-d~~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~---~~~~~~~~~~~~L~~~  337 (621)
T 2vgl_A          262 LRLLQCYPPPE-DPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHD---SEPNLLVRACNQLGQF  337 (621)
T ss_dssp             HHHGGGSSSCS-SHHHHHHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCC-CHHHHHHHHHHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcC---CcHHHHHHHHHHHHHH
Confidence            66665554321 1122333333333222   11 1        2  245555555554432   1111123466778888


Q ss_pred             cCCChHHHHHHHHHhHHHHHhhhCHHHHHHhhhHHHHHhcc-CCcHHHHHHHHHHHHccccccChHHHHHhHHHHHHHhh
Q 009975          223 LRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSS-DSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLL  301 (521)
Q Consensus       223 l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~-d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l  301 (521)
                      +.+.++++|..++.++..+....+.........+.+...+. |++..+|..+++.+..++..    ...+.++..+...+
T Consensus       338 L~~~~~niry~aL~~l~~l~~~~~~~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~----~Nv~~Iv~eL~~yl  413 (621)
T 2vgl_A          338 LQHRETNLRYLALESMCTLASSEFSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCDR----SNAQQIVAEMLSYL  413 (621)
T ss_dssp             SSCSCHHHHHHHHHHHHHHTTCTTTHHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCH----HHHHHHHHHHHHHH
T ss_pred             hcCCCcchHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHcCh----hhHHHHHHHHHHHH
Confidence            88888999999999999998765422334555666666667 89999999999998888732    23567777788888


Q ss_pred             cCCChHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChhhhHHHHHHHHHHHcCC
Q 009975          302 KDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQD  381 (521)
Q Consensus       302 ~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d  381 (521)
                      .+.+.+.|..++.+++.++..+.+..  ...+..+.+++.+....+...++..+..+....+  ....+.+..+...+.|
T Consensus       414 ~~~d~~~~~~~v~~I~~la~k~~~~~--~~~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~~~~--~~~~~~~~~l~~~l~~  489 (621)
T 2vgl_A          414 ETADYSIREEIVLKVAILAEKYAVDY--TWYVDTILNLIRIAGDYVSEEVWYRVIQIVINRD--DVQGYAAKTVFEALQA  489 (621)
T ss_dssp             HHCCHHHHHHHHHHHHHHHHHHCSST--HHHHHHHHHHHHHHGGGSCSHHHHHHHHHHGGGC--SCHHHHHHHHHHHHTS
T ss_pred             HhcCHHHHHHHHHHHHHHHHhcCCcH--HHHHHHHHHHHHhhcccchHHHHHHHHHHHhCCh--hHHHHHHHHHHHHHcC
Confidence            88899999999999999987765432  4566677776655443444445555554444332  2344556666777777


Q ss_pred             Cc--HHHHHHHHHHHHHHHHHhCHHH-H-HhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChHHHhhcHHHHHHhhc
Q 009975          382 KV--YSIRDAAANNLKRLAEEFGPEW-A-MQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINAS  457 (521)
Q Consensus       382 ~~--~~vr~~a~~~l~~l~~~~~~~~-~-~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l  457 (521)
                      +.  ..+-..++..+|++........ . ...++..+.+.+.+.+..+|..++.++.++....+.  ..+.+...+-...
T Consensus       490 ~~~~~~li~~~~wilGEy~~~~~~~~~~~p~~~l~~l~~~~~~~~~~v~~~~Lta~~Kl~~~~p~--~~~~i~~~l~~~~  567 (621)
T 2vgl_A          490 PACHENLVKVGGYILGEFGNLIAGDPRSSPLIQFNLLHSKFHLCSVPTRALLLSTYIKFVNLFPE--VKATIQDVLRSDS  567 (621)
T ss_dssp             SSCCHHHHHHHHHHHHHHTHHHHSSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHCGG--GHHHHHHHHSSHH
T ss_pred             ccchHHHHHHHHHHhcchHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHChH--HHHHHHHHHHHHh
Confidence            64  3455566688888765442110 0 113455666666778899999999999998765432  2233444444444


Q ss_pred             C--CCCchHHHHHHHHHHHHH
Q 009975          458 K--DRVPNIKFNVAKVLQSLI  476 (521)
Q Consensus       458 ~--d~~~~VR~~a~~~l~~~~  476 (521)
                      .  |.+++||..|...+..+.
T Consensus       568 ~~~~~d~evrdRA~~y~~Ll~  588 (621)
T 2vgl_A          568 QLKNADVELQQRAVEYLRLST  588 (621)
T ss_dssp             HHSCSSHHHHHHHHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHHHHHc
Confidence            4  899999999998887764

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=99.74  E-value=5e-14  Score=150.52  Aligned_cols=411  Identities=10%  Similarity=0.073  Sum_probs=257.0

Q ss_pred             HHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhh-cC------
Q 009975           96 TELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKL-LE------  168 (521)
Q Consensus        96 ~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~-~~------  168 (521)
                      ..+...+.. ..++++.+|  |-..|..+-.   .+.+...++..+.  ..+.+..+|..|.-.+.+.... ..      
T Consensus         5 ~~l~~~L~~-~~spd~~~r--Ae~~L~~~~~---~p~~~~~L~~il~--~~~~~~~vR~~A~i~lkn~i~~~w~~~~~~~   76 (960)
T 1wa5_C            5 ETVAKFLAE-SVIASTAKT--SERNLRQLET---QDGFGLTLLHVIA--STNLPLSTRLAGALFFKNFIKRKWVDENGNH   76 (960)
T ss_dssp             HHHHHHHHH-TTSGGGHHH--HHHHHHHHHT---STTHHHHHHHHHH--CTTSCHHHHHHHHHHHHHHHHHHSBCSSSCB
T ss_pred             HHHHHHHHH-hcCCCHHHH--HHHHHHHhhc---CCCHHHHHHHHHh--cCCCCHHHHHHHHHHHHHHHHhcCCCcccCC
Confidence            356666666 456677788  7778876622   2234343443332  1223568999999999887654 11      


Q ss_pred             --hhhhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhC
Q 009975          169 --PQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN  246 (521)
Q Consensus       169 --~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~  246 (521)
                        ++..+..+...+...+.+.+..+|..++.++..++..--+ ..|++++|.+.+.+++++...+.+++.++..+.+...
T Consensus        77 ~l~~~~k~~ik~~ll~~l~~~~~~ir~~l~~~ia~ia~~d~p-~~Wp~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~  155 (960)
T 1wa5_C           77 LLPANNVELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFP-DRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWR  155 (960)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHST-TTCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGT
T ss_pred             CCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCc-cchhHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence              2223444555555544445589999999999999986544 3589999999999988888889999999999988553


Q ss_pred             H-----HH------HHHhhhHHHHH-------hccCCcH---HHH------HHHHHHHHcccc-ccChH--HHHHhHHHH
Q 009975          247 P-----EL------AIQHILPCVKE-------LSSDSSQ---HVR------SALASVIMGMAP-LLGKD--ATIEQLLPI  296 (521)
Q Consensus       247 ~-----~~------~~~~~~~~l~~-------~~~d~~~---~vr------~~~~~~l~~i~~-~~~~~--~~~~~l~~~  296 (521)
                      .     +.      +.....|.+.+       .+.+.+.   .+|      ..+++++..+.. .++..  .....+++.
T Consensus       156 ~~~~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~~~~~~~  235 (960)
T 1wa5_C          156 PLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGI  235 (960)
T ss_dssp             TSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTHHHHHHH
T ss_pred             HhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHH
Confidence            1     11      12222332222       2443321   233      335555544321 12221  113455676


Q ss_pred             HHHhhcCC-----------C----hHHHHHHHHHHHHhhhhhchhh--HhhhHHHHHHHHhc-----CCChHHHHHHHHH
Q 009975          297 FLSLLKDE-----------F----PDVRLNIISKLDQVNQVIGIDL--LSQSLLPAIVELAE-----DRHWRVRLAIIEY  354 (521)
Q Consensus       297 l~~~l~d~-----------~----~~vr~~a~~~l~~~~~~~~~~~--~~~~~~~~l~~~~~-----~~~~~vr~~~~~~  354 (521)
                      +.+.+...           +    +.+|+.++.++..+....+...  +...+++.+.+.+.     .....++..+++.
T Consensus       236 ~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~f  315 (960)
T 1wa5_C          236 FHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSF  315 (960)
T ss_dssp             HHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHH
T ss_pred             HHHHHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHH
Confidence            66665321           1    3578888988888876554321  12334444444332     3456788888888


Q ss_pred             hHHHHhhhC------hhhhHHHHH-HHHHHHcC-----------------------CCcHHHHHHHHHHHHHHHHHhCHH
Q 009975          355 IPLLASQLG------VGFFDDKLG-ALCMQWLQ-----------------------DKVYSIRDAAANNLKRLAEEFGPE  404 (521)
Q Consensus       355 l~~l~~~~~------~~~~~~~l~-~~l~~~l~-----------------------d~~~~vr~~a~~~l~~l~~~~~~~  404 (521)
                      +..+++.-.      ...+...++ +.++..+.                       +..+..|.+|..++..++..+| +
T Consensus       316 l~~~~~~~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~-~  394 (960)
T 1wa5_C          316 LTAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNE-V  394 (960)
T ss_dssp             HHHHHTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCH-H
T ss_pred             HHHHhCcHhHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcc-h
Confidence            877764311      112333444 45544432                       1123588999999999998887 4


Q ss_pred             HHHhhhHHHHHhhhc------CcchHHHHHHHHHHHHhhcccC-h----H------HHhhcHHHHHHhhcCCC---CchH
Q 009975          405 WAMQHITPQVLEMIN------NPHYLYRMTILRAISLLAPVMG-S----E------ITCSRLLPVVINASKDR---VPNI  464 (521)
Q Consensus       405 ~~~~~l~~~l~~~l~------~~~~~~r~~a~~~l~~l~~~~~-~----~------~~~~~il~~l~~~l~d~---~~~V  464 (521)
                      .....+++.+.+.+.      +++|+.|++|+.+++.++.... .    .      .+.+.+...++..+.|+   ++.|
T Consensus       395 ~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~v  474 (960)
T 1wa5_C          395 LVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIIL  474 (960)
T ss_dssp             HHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHH
T ss_pred             hHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCcee
Confidence            445667777766665      6789999999999999986421 1    1      12222233445556677   8999


Q ss_pred             HHHHHHHHHHHHhhhchHHHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHHh
Q 009975          465 KFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHV  517 (521)
Q Consensus       465 R~~a~~~l~~~~~~~~~~~~~~~~~~~l~~l~~D~~~~vr~~a~~al~~l~~~  517 (521)
                      |.+++++++.+.+.+.++ +...++|.+.+.+.|++..||..|+.|+..+.+.
T Consensus       475 r~~a~~~lg~~~~~~~~~-~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~  526 (960)
T 1wa5_C          475 RVDAIKYIYTFRNQLTKA-QLIELMPILATFLQTDEYVVYTYAAITIEKILTI  526 (960)
T ss_dssp             HHHHHHHHHHTGGGSCHH-HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred             hHHHHHHHHHHHhhCCHH-HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhc
Confidence            999999999999987544 4577888888878899999999999999998764

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.70  E-value=8.6e-16  Score=132.43  Aligned_cols=188  Identities=15%  Similarity=0.217  Sum_probs=151.3

Q ss_pred             HhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChhhhHHH
Q 009975          291 EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDK  370 (521)
Q Consensus       291 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~  370 (521)
                      ....+.+++.++|+++.+|..|+..++.+..        ...++.+.+.++|+++.+|..++..++.+..        +.
T Consensus        13 ~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~--------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~--------~~   76 (201)
T 3ltj_A           13 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD--------ERAVEPLIKALKDEDAWVRRAAADALGQIGD--------ER   76 (201)
T ss_dssp             HHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GG
T ss_pred             CcchHHHHHHhcCCCHHHHHHHHHHHHhcCC--------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--------HH
Confidence            3567888889999999999999999988654        3567888888889999999999888876532        12


Q ss_pred             HHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChHHHhhcHH
Q 009975          371 LGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLL  450 (521)
Q Consensus       371 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~il  450 (521)
                      ..|.+...+.|+++.||..|+.+++.+.        ....++.+...+.|+++.+|..++.+++.+..        +..+
T Consensus        77 ~~~~L~~~l~d~~~~vr~~a~~aL~~~~--------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~  140 (201)
T 3ltj_A           77 AVEPLIKALKDEDGWVRQSAAVALGQIG--------DERAVEPLIKALKDEDWFVRIAAAFALGEIGD--------ERAV  140 (201)
T ss_dssp             GHHHHHHHTTCSSHHHHHHHHHHHHHHC--------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC--------GGGH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHhC--------cHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--------HHHH
Confidence            4577778889999999999999988753        23477888888899999999999999998853        4567


Q ss_pred             HHHHhhcCCCCchHHHHHHHHHHHHHhhhchHHHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHHhh
Q 009975          451 PVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVM  518 (521)
Q Consensus       451 ~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~~~~~~~~l~~l~~D~~~~vr~~a~~al~~l~~~~  518 (521)
                      +.+..++.|+++.||..++.+|+.+..        +...+.|..+++|+++.||..|..+++.+...+
T Consensus       141 ~~L~~~l~d~~~~vr~~A~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~~~~  200 (201)
T 3ltj_A          141 EPLIKALKDEDGWVRQSAADALGEIGG--------ERVRAAMEKLAETGTGFARKVAVNYLETHKSLI  200 (201)
T ss_dssp             HHHHHHTTCSSHHHHHHHHHHHHHHCS--------HHHHHHHHHHHHHCCHHHHHHHHHHHHHCC---
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHhCc--------hhHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhc
Confidence            888899999999999999999988742        456777888888999999999999998876543

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=99.70  E-value=8.3e-16  Score=136.54  Aligned_cols=189  Identities=12%  Similarity=0.113  Sum_probs=152.5

Q ss_pred             HhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhc---hhhHhhhHHHHHHHHhc-CCChHHHHHHHHHhHHHHhhhChh-
Q 009975          291 EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG---IDLLSQSLLPAIVELAE-DRHWRVRLAIIEYIPLLASQLGVG-  365 (521)
Q Consensus       291 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~---~~~~~~~~~~~l~~~~~-~~~~~vr~~~~~~l~~l~~~~~~~-  365 (521)
                      ..+.+.+...+.|.++..|..++..+..++...+   ...+ ..+++.+...+. |++..+|..++.+++.++..+|.. 
T Consensus        14 ~~l~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~-~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~   92 (242)
T 2qk2_A           14 SKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY-GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRF   92 (242)
T ss_dssp             GGSCTTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGG
T ss_pred             ccCCHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH-HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhH
Confidence            3444556667778888888888888877766421   1122 567788888784 889999999999999999888774 


Q ss_pred             -hhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChH-
Q 009975          366 -FFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE-  443 (521)
Q Consensus       366 -~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~-  443 (521)
                       .+...++|.++..++|++..||.++..++..++...+    .+.++|.+...+++++|++|..++.+++.+....+++ 
T Consensus        93 ~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~----~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~  168 (242)
T 2qk2_A           93 SNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS----LEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTA  168 (242)
T ss_dssp             HHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC----HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGG
T ss_pred             HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC----HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCC
Confidence             3456789999999999999999999999999987665    3568888999999999999999999999987665532 


Q ss_pred             ---HHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchHHH
Q 009975          444 ---ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMV  484 (521)
Q Consensus       444 ---~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~  484 (521)
                         .+.+.++|.+..++.|+.+.||.+|..+++.++..+|.+.+
T Consensus       169 ~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~  212 (242)
T 2qk2_A          169 LNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAV  212 (242)
T ss_dssp             CCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred             ccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHHHH
Confidence               34578999999999999999999999999999999887544

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=99.69  E-value=2.3e-13  Score=146.04  Aligned_cols=484  Identities=13%  Similarity=0.100  Sum_probs=302.1

Q ss_pred             HHhhhhHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHHHhHHHHHHHhhc-CCCCcchhhhhhhhhhh----cCCCCh
Q 009975           18 AHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAA-GEWFTARVSACGLFHIA----YPSAPD   92 (521)
Q Consensus        18 ~~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~p~i~~~~~-~~~~~~r~~~~~~~~~~----~~~~~~   92 (521)
                      +..+...+..+..++|+..|+.|.+.|..+-+.  |     ..+++...+.+ +.+..+|..|...+...    +..+++
T Consensus        23 ~~~l~~~l~~l~~~~~~~~r~~A~~~L~~~~~~--p-----~~~~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l~~   95 (963)
T 2x19_B           23 VENVEKALHQLYYDPNIENKNLAQKWLMQAQVS--P-----QAWHFSWQLLQPDKVPEIQYFGASALHIKISRYWSDIPT   95 (963)
T ss_dssp             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHS--T-----THHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHCGGGSCG
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC--H-----HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhCHHhCCH
Confidence            344666677766677889999999999886553  2     22333333333 44567787777665543    344555


Q ss_pred             H----HHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcC-----CChhHHHHHHHHHHHH
Q 009975           93 I----LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQD-----DQDSVRLLAVEGCAAL  163 (521)
Q Consensus        93 ~----~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d-----~~~~vr~~a~~~l~~l  163 (521)
                      +    .++.+++.+.+.. +..+.||...+.++..+++...++ .|+.+++.+...+++     +++..+..++.+|..+
T Consensus        96 ~~~~~ir~~ll~~l~~~~-~~~~~ir~kl~~~la~i~~~~~p~-~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l  173 (963)
T 2x19_B           96 DQYESLKAQLFTQITRFA-SGSKIVLTRLCVALASLALSMMPD-AWPCAVADMVRLFQAEDSPVDGQGRCLALLELLTVL  173 (963)
T ss_dssp             GGHHHHHHHHHHHHHHTT-TSCHHHHHHHHHHHHHHHHHHTTT-TSTTHHHHHHHHHCC------CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHhCcc-ccchHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhC
Confidence            5    3445555555432 235899999999999999875533 388888888887765     2556788899999888


Q ss_pred             hhhcCh---------------hhhhhhhHHHHHHhcCCCC--hHHHHHHHHHHHHHHHHhCCCc-cccchHHHHHHhcCC
Q 009975          164 GKLLEP---------------QDCVAHILPVIVNFSQDKS--WRVRYMVANQLYELCEAVGPEP-TRMDLVPAYVRLLRD  225 (521)
Q Consensus       164 ~~~~~~---------------~~~~~~l~~~l~~~~~d~~--~~vR~~~~~~l~~i~~~~~~~~-~~~~l~~~l~~~l~d  225 (521)
                      .+.+..               ....+.+++++...+++.+  ..++..+.+++...+. .+... ....+++.+.+.+.+
T Consensus       174 ~ee~~~~~~~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~-~~~~~~~~~~ll~~l~~~l~~  252 (963)
T 2x19_B          174 PEEFQTSRLPQYRKGLVRTSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQ-LEVPLQDCEALIQAAFAALQD  252 (963)
T ss_dssp             HHHHTTCCC---------CCSGGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHT-SSCCGGGTHHHHHHHHHHTTS
T ss_pred             HHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHc-CCCCcccchHHHHHHHHHhCC
Confidence            853311               1123456677777665532  2478888888876655 33322 125678888888854


Q ss_pred             ChHHHHHHHHHhHHHHHhhhCH---HHHHHhhhHHHHHh-------ccCCcHHHHHHHHHHHHccccccCh--------H
Q 009975          226 NEAEVRIAAAGKVTKFCRILNP---ELAIQHILPCVKEL-------SSDSSQHVRSALASVIMGMAPLLGK--------D  287 (521)
Q Consensus       226 ~~~~vr~~a~~~l~~l~~~~~~---~~~~~~~~~~l~~~-------~~d~~~~vr~~~~~~l~~i~~~~~~--------~  287 (521)
                        +++|..|+.++..+.....+   ......+++.+...       ..+.+.......++.+..++.....        .
T Consensus       253 --~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~l~~~~~~~  330 (963)
T 2x19_B          253 --SELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENHSRALLDQVEHW  330 (963)
T ss_dssp             --TTTHHHHHHHHHHHHTCTTGGGCHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHCGGGH
T ss_pred             --chHHHHHHHHHHHHHcccccccCHHHHHHHHHHHHhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhHHHHHcCccch
Confidence              57999999999998875322   12223333333221       2223333444555666555432211        1


Q ss_pred             HHHHhHHHHHHHhhcC-----CChHHHHHHHHHHHHhhhhhc----------hhh---HhhhHHHHHHHHhcCC------
Q 009975          288 ATIEQLLPIFLSLLKD-----EFPDVRLNIISKLDQVNQVIG----------IDL---LSQSLLPAIVELAEDR------  343 (521)
Q Consensus       288 ~~~~~l~~~l~~~l~d-----~~~~vr~~a~~~l~~~~~~~~----------~~~---~~~~~~~~l~~~~~~~------  343 (521)
                      .....+++.+..+..+     .++.+...++..+..+++...          .+.   +...+++.+...+..+      
T Consensus       331 ~~~~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~p~~~~~~  410 (963)
T 2x19_B          331 QSFLALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYG  410 (963)
T ss_dssp             HHHHHHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCccccc
Confidence            1223556666666664     456777777777776655220          001   1123333333322110      


Q ss_pred             --------Ch-HHHHHHHHHhHHHHhhhChhhhHHHHHHHHHHHc----CCCcHHHHHHHHHHHHHHHHHhCHH--HHHh
Q 009975          344 --------HW-RVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWL----QDKVYSIRDAAANNLKRLAEEFGPE--WAMQ  408 (521)
Q Consensus       344 --------~~-~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l----~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~  408 (521)
                              .+ ..|..+.+.+..++...+.+ ..+.+.+.+...+    .+.+|..|++++.+++.+......+  ....
T Consensus       411 ~~~~de~~~~~~~r~~~~~~L~~~~~~~~~~-~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~~~l~  489 (963)
T 2x19_B          411 FWSSDEKEQFRIYRVDISDTLMYVYEMLGAE-LLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDVVP  489 (963)
T ss_dssp             TSCHHHHHHHHHHHHHHHHHHHHHHHHHTHH-HHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCCSHHH
T ss_pred             CCChhHHHHHHHHHHHHHHHHHHHHHHccHH-HHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchhhHHHH
Confidence                    11 34777888888888777744 3455666666666    6789999999999999998766432  1223


Q ss_pred             hhHHHHHhhhcCcchHHHHHHHHHHHHhhcccCh-HHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchH--HHH
Q 009975          409 HITPQVLEMINNPHYLYRMTILRAISLLAPVMGS-EITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--MVE  485 (521)
Q Consensus       409 ~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~-~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~--~~~  485 (521)
                      .+++.+.. +.++++.+|.+++++++.+...++. ..+.+.+++.++..+.+  +.||..|+.++..++...+..  .+.
T Consensus       490 ~l~~~l~~-l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~  566 (963)
T 2x19_B          490 GLIGLIPR-ISISNVQLADTVMFTIGALSEWLADHPVMINSVLPLVLHALGN--PELSVSSVSTLKKICRECKYDLPPYA  566 (963)
T ss_dssp             HHHHHGGG-SCCCSHHHHHHHHHHHHHTHHHHHHCHHHHTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTH
T ss_pred             HHHHHHHh-CCCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHhhH
Confidence            34443322 3446788999999999999986543 34678899999999977  789999999999999875543  223


Q ss_pred             hhHHHHHHHhcC--CCCccHHHHHHHHHHHHHHh
Q 009975          486 KTIRPCLVELTE--DPDVDVRFFATQAIQSIDHV  517 (521)
Q Consensus       486 ~~~~~~l~~l~~--D~~~~vr~~a~~al~~l~~~  517 (521)
                      +.++..+..+..  +-+.+.|..+.+|++.+...
T Consensus       567 ~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~  600 (963)
T 2x19_B          567 ANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSA  600 (963)
T ss_dssp             HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhc
Confidence            444554555444  34678888888998887643

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.69  E-value=2.1e-15  Score=131.05  Aligned_cols=187  Identities=19%  Similarity=0.196  Sum_probs=119.5

Q ss_pred             hhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHh
Q 009975          174 AHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQH  253 (521)
Q Consensus       174 ~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~  253 (521)
                      +..++.+...++|+++.+|..++..++.+.        .+..++.+.+++.|+++.||..++.+|+.+..        +.
T Consensus        18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~--------~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~--------~~   81 (211)
T 3ltm_A           18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIG--------DERAVEPLIKALKDEDAWVRRAAADALGQIGD--------ER   81 (211)
T ss_dssp             GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC--------CGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC--------GG
T ss_pred             HhHHHHHHHHHcCCCHHHHHHHHHHHHHhC--------CccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--------HH
Confidence            345566666667777777777777776542        13566777777777777777777777766543        23


Q ss_pred             hhHHHHHhccCCcHHHHHHHHHHHHccccccChHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchhhHhhhHH
Q 009975          254 ILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLL  333 (521)
Q Consensus       254 ~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~  333 (521)
                      .++.+..++.|+++.||..++.+++.+..        ...+|.+..+++|+++.||..++.+++.+..        ...+
T Consensus        82 ~~~~L~~~l~~~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~  145 (211)
T 3ltm_A           82 AVEPLIKALKDEDGWVRQSAAVALGQIGD--------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--------ERAV  145 (211)
T ss_dssp             GHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--------HHHH
Confidence            45666666677777777777777776642        2355666667777777777777777776643        3456


Q ss_pred             HHHHHHhcCCChHHHHHHHHHhHHHHhhhChhhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHH
Q 009975          334 PAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEE  400 (521)
Q Consensus       334 ~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~  400 (521)
                      +.+.++++|+++.+|..++.+++.+..        +...+.+..+++|+++.||..|..+|+.+...
T Consensus       146 ~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~  204 (211)
T 3ltm_A          146 EPLIKALKDEDGWVRQSAADALGEIGG--------ERVRAAMEKLAETGTGFARKVAVNYLETHKSF  204 (211)
T ss_dssp             HHHHHHTTCSSHHHHHHHHHHHHHHCS--------HHHHHHHHHHHHHCCHHHHHHHHHHHHC----
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHhCc--------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Confidence            666666677777777777776665521        34556666666677777777777776665543

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=99.69  E-value=1.4e-15  Score=135.09  Aligned_cols=186  Identities=16%  Similarity=0.216  Sum_probs=159.1

Q ss_pred             hhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhCh---hhhHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHHHHhCHHH
Q 009975          330 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---GFFDDKLGALCMQWLQ-DKVYSIRDAAANNLKRLAEEFGPEW  405 (521)
Q Consensus       330 ~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~  405 (521)
                      ..+-+.+.+.+++++|..|..++..+..+.+..+.   ..+ ..+++.+...+. |.+..||..|+.+++.++..+|..+
T Consensus        14 ~~l~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~-~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~   92 (242)
T 2qk2_A           14 SKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY-GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRF   92 (242)
T ss_dssp             GGSCTTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGG
T ss_pred             ccCCHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH-HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhH
Confidence            44555677788999999999999999999887432   223 568889999994 9999999999999999999888653


Q ss_pred             --HHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChHHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchH-
Q 009975          406 --AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS-  482 (521)
Q Consensus       406 --~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~-  482 (521)
                        +...++|.+.+.+.|++..+|.++..++..+....+    .+.++|.+...++++++.||..++..++.+....+++ 
T Consensus        93 ~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~----~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~  168 (242)
T 2qk2_A           93 SNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS----LEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTA  168 (242)
T ss_dssp             HHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC----HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGG
T ss_pred             HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC----HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCC
Confidence              457799999999999999999999999999998665    3568899999999999999999999999987765433 


Q ss_pred             ---HHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHHhhcc
Q 009975          483 ---MVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMMS  520 (521)
Q Consensus       483 ---~~~~~~~~~l~~l~~D~~~~vr~~a~~al~~l~~~~~~  520 (521)
                         .+.+.++|.+..+++|++++||..|..+++.+...+|.
T Consensus       169 ~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~  209 (242)
T 2qk2_A          169 LNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGD  209 (242)
T ss_dssp             CCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCH
T ss_pred             ccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCH
Confidence               34478999999999999999999999999999988764

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.68  E-value=4.2e-15  Score=129.16  Aligned_cols=188  Identities=21%  Similarity=0.203  Sum_probs=131.8

Q ss_pred             HHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcChhhhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCccccch
Q 009975          136 DIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDL  215 (521)
Q Consensus       136 ~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l  215 (521)
                      ..++.+..++.++++.+|..|+..|+.+..        ...++.+..++.|+++.+|..++.+++.+.        .+..
T Consensus        19 ~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~--------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~--------~~~~   82 (211)
T 3ltm_A           19 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD--------ERAVEPLIKALKDEDAWVRRAAADALGQIG--------DERA   82 (211)
T ss_dssp             GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHC--------CGGG
T ss_pred             hHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhC--------CHHH
Confidence            345556666677777888888777776543        245666777777888888888888777653        2456


Q ss_pred             HHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccChHHHHHhHHH
Q 009975          216 VPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLP  295 (521)
Q Consensus       216 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~  295 (521)
                      ++.+.++++|+++.||..|+.+|+.+..        +..++.+..++.|+++.||..++.+++.+..        ...++
T Consensus        83 ~~~L~~~l~~~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~~  146 (211)
T 3ltm_A           83 VEPLIKALKDEDGWVRQSAAVALGQIGD--------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--------ERAVE  146 (211)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHhCc--------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--------HHHHH
Confidence            7777788888888888888888877643        2345667777788888888888888877742        34567


Q ss_pred             HHHHhhcCCChHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhC
Q 009975          296 IFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG  363 (521)
Q Consensus       296 ~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~  363 (521)
                      .+..+++|+++.||..++.+|+.+..        +..++.+.++++|+++.||..+..+|..+....+
T Consensus       147 ~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~~  206 (211)
T 3ltm_A          147 PLIKALKDEDGWVRQSAADALGEIGG--------ERVRAAMEKLAETGTGFARKVAVNYLETHKSFNH  206 (211)
T ss_dssp             HHHHHTTCSSHHHHHHHHHHHHHHCS--------HHHHHHHHHHHHHCCHHHHHHHHHHHHC------
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHhCc--------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCC
Confidence            77777888888888888888887754        4567777777778888888888887776665443

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.68  E-value=3.7e-15  Score=128.40  Aligned_cols=184  Identities=20%  Similarity=0.200  Sum_probs=119.2

Q ss_pred             hhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHh
Q 009975          174 AHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQH  253 (521)
Q Consensus       174 ~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~  253 (521)
                      ....+.+.+.++|+++.+|..++..++.+.        ....++.+.+.++|+++.+|..|+.+|+.+..        +.
T Consensus        13 ~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~--------~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~--------~~   76 (201)
T 3ltj_A           13 PEKVEMYIKNLQDDSYYVRRAAAYALGKIG--------DERAVEPLIKALKDEDAWVRRAAADALGQIGD--------ER   76 (201)
T ss_dssp             HHHHHHHHHHTTCSCHHHHHHHHHHHHHHC--------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GG
T ss_pred             CcchHHHHHHhcCCCHHHHHHHHHHHHhcC--------ChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--------HH
Confidence            345566666777777777777777776543        13456677777777777777777777766543        13


Q ss_pred             hhHHHHHhccCCcHHHHHHHHHHHHccccccChHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchhhHhhhHH
Q 009975          254 ILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLL  333 (521)
Q Consensus       254 ~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~  333 (521)
                      .++.+...+.|+++.+|..++.+++.+..        ...++.+..++.|+++.||..++.+++.+..        ...+
T Consensus        77 ~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~  140 (201)
T 3ltj_A           77 AVEPLIKALKDEDGWVRQSAAVALGQIGD--------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--------ERAV  140 (201)
T ss_dssp             GHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC--------GGGH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--------HHHH
Confidence            45666666677777777777777776542        2356666667777777777777777776643        3456


Q ss_pred             HHHHHHhcCCChHHHHHHHHHhHHHHhhhChhhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH
Q 009975          334 PAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRL  397 (521)
Q Consensus       334 ~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l  397 (521)
                      +.+.++++|+++.+|..++.+++.+.    .    +..++.+..+++|+++.||..|..+|+.+
T Consensus       141 ~~L~~~l~d~~~~vr~~A~~aL~~~~----~----~~~~~~L~~~l~d~~~~vr~~A~~aL~~l  196 (201)
T 3ltj_A          141 EPLIKALKDEDGWVRQSAADALGEIG----G----ERVRAAMEKLAETGTGFARKVAVNYLETH  196 (201)
T ss_dssp             HHHHHHTTCSSHHHHHHHHHHHHHHC----S----HHHHHHHHHHHHHCCHHHHHHHHHHHHHC
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHhC----c----hhHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence            66666667777777777777666552    1    23555666666677777777777666654

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=99.68  E-value=5e-14  Score=151.16  Aligned_cols=480  Identities=9%  Similarity=0.047  Sum_probs=288.1

Q ss_pred             hhhHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHHHhHHHHHHHhhc-CCCCcchhhhhhhhhhh----cCCCChH--
Q 009975           21 LLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAA-GEWFTARVSACGLFHIA----YPSAPDI--   93 (521)
Q Consensus        21 l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~p~i~~~~~-~~~~~~r~~~~~~~~~~----~~~~~~~--   93 (521)
                      +...+..+. ++|+..|+.|.+.|..+-+.  | +.+..    ...+.. +.+..+|..|...+...    +..++++  
T Consensus         9 l~~~l~~~~-~~d~~~r~~A~~~L~~~~~~--p-~~w~~----~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~   80 (971)
T 2x1g_F            9 LEEAVVSFY-RSNSQNQAITHEWLTDAEAS--P-QAWQF----SWQLMQLGKSQEVQFFGAITLHSKLMKHWHEVPPENR   80 (971)
T ss_dssp             --CTHHHHH-TSTTTC----CHHHHHTTTS--T-HHHHH----HHHHTCTTSCHHHHHHHHHHHHHHHHHCGGGCCGGGH
T ss_pred             HHHHHHHHc-CCCHHHHHHHHHHHHHHHcC--H-HHHHH----HHHHHhcCCcHHHHHHHHHHHHHHHHccHhhCCHHHH
Confidence            444554533 46778899999888775442  1 22333    333333 44567787777665433    3455555  


Q ss_pred             --HHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCC------ChhHHHHHHHHHHHHhh
Q 009975           94 --LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDD------QDSVRLLAVEGCAALGK  165 (521)
Q Consensus        94 --~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~------~~~vr~~a~~~l~~l~~  165 (521)
                        .++.+++.+.+..++ .+.||...+.++..+++...+  .|+.+++.+...++++      ++..+..++.+|..+.+
T Consensus        81 ~~ir~~ll~~l~~~~~~-~~~vr~kl~~~la~i~~~~~p--~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~E  157 (971)
T 2x1g_F           81 EELKQKILESIVRFAGG-PKIVLNRLCISLGAYIVHMLG--EWPGAIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIPE  157 (971)
T ss_dssp             HHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHHHHHTTC--C------HHHHHHHHTC----CHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHccc--cccHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHhHH
Confidence              455566666655433 589999999999999988665  6888888888887664      56778889999998875


Q ss_pred             hcCh-----------h---hhhhhhHHHHHHhcCC---C-----ChHHHHHHHHHHHHHHHH--hCCCccccchHHHHHH
Q 009975          166 LLEP-----------Q---DCVAHILPVIVNFSQD---K-----SWRVRYMVANQLYELCEA--VGPEPTRMDLVPAYVR  221 (521)
Q Consensus       166 ~~~~-----------~---~~~~~l~~~l~~~~~d---~-----~~~vR~~~~~~l~~i~~~--~~~~~~~~~l~~~l~~  221 (521)
                      .+..           +   ...+.+++++...+++   +     ++.++..+.+++..+...  .+.. ....+++.+..
T Consensus       158 Ei~~~~~~~~r~~~~~~l~~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~ip~~-~~~~ll~~l~~  236 (971)
T 2x1g_F          158 EAQVIHTSVKRVVLRAEIAKRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNIGYTIE-GCVTITAVLLE  236 (971)
T ss_dssp             HHHHCCCSSCHHHHHHHHHTTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHSCCCGG-GHHHHHHHHHH
T ss_pred             HHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccchhHHHHHHHHHHHHHhhCCcCcc-ccccHHHHHHh
Confidence            3210           0   1123455555554432   1     137899999999888774  3333 34567776665


Q ss_pred             hc----------------CCChHHHHHHHHHhHHHHHhhhCH---HHHHHhhhHHHHH-------hccCCc---HHHHHH
Q 009975          222 LL----------------RDNEAEVRIAAAGKVTKFCRILNP---ELAIQHILPCVKE-------LSSDSS---QHVRSA  272 (521)
Q Consensus       222 ~l----------------~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~~~~~l~~-------~~~d~~---~~vr~~  272 (521)
                       +                .++++++|..|+.++..+.....+   ......++|.+..       ...+.+   ......
T Consensus       237 -L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~  315 (971)
T 2x1g_F          237 -VVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHNYPKTAFVLIKMFLDSLSEITKTEWKRENDNEDIIVH  315 (971)
T ss_dssp             -HHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGGCHHHHHHHHHHHHHHHHHHHHHHSSSSCSCSHHHHH
T ss_pred             -hhhhhccccccccccccCcCCcHHHHHHHHHHHHHHcCccccccHHHHHHHHHHHHHhHHHHHHHHhcccccchHHHHH
Confidence             3                124678999999999998874321   1222333443332       113333   245555


Q ss_pred             HHHHHHcccccc----C---------hHHHHHhHHHHHHHhhc-----CCChHHHHHHHHHHHHhhhhh-c-------h-
Q 009975          273 LASVIMGMAPLL----G---------KDATIEQLLPIFLSLLK-----DEFPDVRLNIISKLDQVNQVI-G-------I-  325 (521)
Q Consensus       273 ~~~~l~~i~~~~----~---------~~~~~~~l~~~l~~~l~-----d~~~~vr~~a~~~l~~~~~~~-~-------~-  325 (521)
                      +++.+..++...    .         .......+++.++.+..     ..+++|+..++..+..+++.. +       . 
T Consensus       316 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~  395 (971)
T 2x1g_F          316 IYMLFVSSVERHSTLLLSGITSADPELSILVHRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHK  395 (971)
T ss_dssp             HHHHHHHHHHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CH
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHH
Confidence            566666555321    1         11123345666666553     347889999999888876522 1       0 


Q ss_pred             --h---hHhhhHHHHHHHHh---cCC-----C-------hHHHHHHHHHhHHHHhhhChhhhHHHHHHHHHHHcCC----
Q 009975          326 --D---LLSQSLLPAIVELA---EDR-----H-------WRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQD----  381 (521)
Q Consensus       326 --~---~~~~~~~~~l~~~~---~~~-----~-------~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d----  381 (521)
                        +   .+...+++.+...+   ++.     +       ...|.++...+..++..+| +.+.+.+.+.+...+..    
T Consensus       396 ~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~-~~~l~~~~~~l~~~l~~~~~~  474 (971)
T 2x1g_F          396 CWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDVLN-DYILEILAAMLDEAIADLQRH  474 (971)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHHHHTTCT-THHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHhccCC
Confidence              0   11133344443332   111     1       1467888888888888877 34455566666665543    


Q ss_pred             -CcHHHHHHHHHHHHHHHHHhCHHH--HHhhhHHHHHhhh-cCcchHHHHHHHHHHHHhhcccCh-HHHhhcHHHHHHhh
Q 009975          382 -KVYSIRDAAANNLKRLAEEFGPEW--AMQHITPQVLEMI-NNPHYLYRMTILRAISLLAPVMGS-EITCSRLLPVVINA  456 (521)
Q Consensus       382 -~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l-~~~~~~~r~~a~~~l~~l~~~~~~-~~~~~~il~~l~~~  456 (521)
                       .+|..|++++.+++.+.+......  ....+++.+..+. .|+++.+|.+++++++.+...++. ..+.+.+++.++..
T Consensus       475 ~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~  554 (971)
T 2x1g_F          475 PTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIPPAINLLVRG  554 (971)
T ss_dssp             TTCCHHHHHHHHHHHHTTTC------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence             789999999999999977654321  2234555333333 256899999999999999987653 24667888999988


Q ss_pred             cCCCCchHHHHHHHHHHHHHhhhchH--HHHhhHHHHHHHhcCC--CCccHHHHHHHHHHHHHHh
Q 009975          457 SKDRVPNIKFNVAKVLQSLIPIVDQS--MVEKTIRPCLVELTED--PDVDVRFFATQAIQSIDHV  517 (521)
Q Consensus       457 l~d~~~~VR~~a~~~l~~~~~~~~~~--~~~~~~~~~l~~l~~D--~~~~vr~~a~~al~~l~~~  517 (521)
                      + |  +.|+..|+.++..+++..+..  .+.+.++..+..+++.  .+.+.+..+.++++.+...
T Consensus       555 l-~--~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~  616 (971)
T 2x1g_F          555 L-N--SSMSAQATLGLKELCRDCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSL  616 (971)
T ss_dssp             H-H--SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHT
T ss_pred             h-C--hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHh
Confidence            8 4  789999999999999876543  2234444444454444  4678899999999888654

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=99.67  E-value=5.6e-13  Score=143.70  Aligned_cols=492  Identities=9%  Similarity=0.028  Sum_probs=305.2

Q ss_pred             chhHHhhhhHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHHHhHHHHHHHhhcCCCCcchhhhhhhhhhh----cCCC
Q 009975           15 VEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIA----YPSA   90 (521)
Q Consensus        15 ~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~p~i~~~~~~~~~~~r~~~~~~~~~~----~~~~   90 (521)
                      +..+..+...+..+.+ ++...|+.|.+.|..+-+.  + +.+..+...+..   +.+..+|..|...+...    +..+
T Consensus        12 ~~~~~~l~~~l~~~~~-p~~~~r~~Ae~~L~~~~~~--p-~~~~~l~~iL~~---s~~~~vr~~aa~~Lk~~i~~~W~~l   84 (1049)
T 3m1i_C           12 DLDIALLDQVVSTFYQ-GSGVQQKQAQEILTKFQDN--P-DAWQKADQILQF---STNPQSKFIALSILDKLITRKWKLL   84 (1049)
T ss_dssp             CCCHHHHHHHHHHHHH-CCHHHHHHHHHHHHHHHHS--T-TGGGGHHHHHHH---CSCHHHHHHHHHHHHHHHHHTGGGS
T ss_pred             cccHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHhC--c-hHHHHHHHHHhh---CCCHHHHHHHHHHHHHHHHhhCccC
Confidence            4445666777777665 3456899999999877543  2 233444444432   44667787776655443    3456


Q ss_pred             ChHHHHHHHHHHHHhcC----CC-----ChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCCChhHHHHHHHHHH
Q 009975           91 PDILKTELRSIYTQLCQ----DD-----MPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCA  161 (521)
Q Consensus        91 ~~~~~~~l~~~l~~l~~----~~-----~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~  161 (521)
                      +++.+..+...+..++.    ++     ++.||...+.++..+++...+ ..|+.+++.+....+ .++..+..+..+|.
T Consensus        85 ~~~~~~~ir~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p-~~Wp~ll~~L~~~~~-~~~~~~~~~l~~L~  162 (1049)
T 3m1i_C           85 PNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWP-QNWPEFIPELIGSSS-SSVNVCENNMIVLK  162 (1049)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTT-TTCTTHHHHHHHHHT-TCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCc-ccchHHHHHHHHHHc-cChHHHHHHHHHHH
Confidence            76655555554444332    22     478999999999999987543 568888888888876 45566777888888


Q ss_pred             HHhhhcCh---------------hhh---hhhhHHHHHHhcC-CCChHHHHHHHHHHHHHHHHhCCCc-cccchHHHHH-
Q 009975          162 ALGKLLEP---------------QDC---VAHILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGPEP-TRMDLVPAYV-  220 (521)
Q Consensus       162 ~l~~~~~~---------------~~~---~~~l~~~l~~~~~-d~~~~vR~~~~~~l~~i~~~~~~~~-~~~~l~~~l~-  220 (521)
                      .+.+.+.+               +..   .+.+++.+...++ ..+..++..+.+++..+....+... ..+.+++.+. 
T Consensus       163 ~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~~~~~~~~ll~~l~~  242 (1049)
T 3m1i_C          163 LLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPYRYIYETNILELLST  242 (1049)
T ss_dssp             HHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHT
T ss_pred             HHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCHHHHhhhhHHHHHHH
Confidence            87754321               001   1224444444443 3567899999999887765443221 2245677666 


Q ss_pred             HhcCCChHHHHHHHHHhHHHHHhhh-CHH-----HHH----HhhhHHHHH-h-------------ccCCcHHHHHHHHHH
Q 009975          221 RLLRDNEAEVRIAAAGKVTKFCRIL-NPE-----LAI----QHILPCVKE-L-------------SSDSSQHVRSALASV  276 (521)
Q Consensus       221 ~~l~d~~~~vr~~a~~~l~~l~~~~-~~~-----~~~----~~~~~~l~~-~-------------~~d~~~~vr~~~~~~  276 (521)
                      .++.  ++.+|.+|+++|..+...- ++.     ...    ..++..+.. +             ..+.++......++.
T Consensus       243 ~~l~--~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~  320 (1049)
T 3m1i_C          243 KFMT--SPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMF  320 (1049)
T ss_dssp             HHHH--SHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHH
T ss_pred             HhCC--CHhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHH
Confidence            3443  5789999999999988652 221     111    112222211 1             134455555556665


Q ss_pred             HHccccccC--------hHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhh----c-hhh---HhhhHHHHHHHHh
Q 009975          277 IMGMAPLLG--------KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI----G-IDL---LSQSLLPAIVELA  340 (521)
Q Consensus       277 l~~i~~~~~--------~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~----~-~~~---~~~~~~~~l~~~~  340 (521)
                      +..++....        .......+++.++.....++.+++..++..+..+.+.+    . ...   +...+++.+...+
T Consensus       321 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m  400 (1049)
T 3m1i_C          321 LTTYLARNRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENM  400 (1049)
T ss_dssp             HHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhc
Confidence            554433211        01123456777777777788999999999888887632    1 111   1133344443322


Q ss_pred             ---cCC-------------------ChHHHHHHHHHhHHHHhhhChhhhHHHHHHHHHHHcC--CCcHHHHHHHHHHHHH
Q 009975          341 ---EDR-------------------HWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQ--DKVYSIRDAAANNLKR  396 (521)
Q Consensus       341 ---~~~-------------------~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~--d~~~~vr~~a~~~l~~  396 (521)
                         +|.                   .|..|.++...+..++... .....+.+.+.+.+.+.  ..+|..|++++.+++.
T Consensus       401 ~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~~~~-~~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algs  479 (1049)
T 3m1i_C          401 VRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLN-VIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGS  479 (1049)
T ss_dssp             CCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHH
T ss_pred             CCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHHHHHHHccC-HHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence               111                   1245667777887777544 44445666777777665  4789999999999998


Q ss_pred             HHHHhCHH---HHHhhhHHHHHhhhc-----CcchHHHHHHHHHHHHhhcccCh-HHHhhcHHHHHHhhcCCCCchHHHH
Q 009975          397 LAEEFGPE---WAMQHITPQVLEMIN-----NPHYLYRMTILRAISLLAPVMGS-EITCSRLLPVVINASKDRVPNIKFN  467 (521)
Q Consensus       397 l~~~~~~~---~~~~~l~~~l~~~l~-----~~~~~~r~~a~~~l~~l~~~~~~-~~~~~~il~~l~~~l~d~~~~VR~~  467 (521)
                      +...++..   .+...+++.+..+..     ++++.+|..++++++.+...+.. ..+...+++.++..+.|+++.||..
T Consensus       480 ia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~~vl~~ll~~l~~~~~~V~~~  559 (1049)
T 3m1i_C          480 ISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDM  559 (1049)
T ss_dssp             TTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTSSCHHHHHH
T ss_pred             HhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence            87665543   223455555554322     35677777899999988764332 3467788899999999999999999


Q ss_pred             HHHHHHHHHhhhchHH----------HHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHHhh
Q 009975          468 VAKVLQSLIPIVDQSM----------VEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVM  518 (521)
Q Consensus       468 a~~~l~~~~~~~~~~~----------~~~~~~~~l~~l~~D~~~~vr~~a~~al~~l~~~~  518 (521)
                      |+.++..+++..+...          +.+.++..+..+..+.+.+-+....+|++.+....
T Consensus       560 A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~  620 (1049)
T 3m1i_C          560 ACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEE  620 (1049)
T ss_dssp             HHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcC
Confidence            9999999998765432          23444554555566666666677777777775443

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=99.66  E-value=3.6e-13  Score=144.51  Aligned_cols=483  Identities=9%  Similarity=0.013  Sum_probs=293.8

Q ss_pred             cCchhHHHHHHHHHHHHHHhh----cCh---hHHHHhHHHHHHHhhcCCCCcchhhhhhhhhhhcCCCChHHHHHHHHHH
Q 009975           30 TVEETCVRDKAVESLCRIGSQ----MRE---SDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIY  102 (521)
Q Consensus        30 ~~~~~~vR~~a~~~l~~i~~~----~~~---~~~~~~l~p~i~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~~l  102 (521)
                      .+.+..+|..|...|...++.    +++   +.+++.+++.+.+...+ ...+|...+..+..++.+.-+ .+..+++.+
T Consensus        50 ~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir~~ll~~l~~~~~~-~~~vr~kl~~~la~i~~~~~p-~Wp~~l~~l  127 (971)
T 2x1g_F           50 LGKSQEVQFFGAITLHSKLMKHWHEVPPENREELKQKILESIVRFAGG-PKIVLNRLCISLGAYIVHMLG-EWPGAIEEV  127 (971)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHHCGGGCCGGGHHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHHHHHTTC-C------HH
T ss_pred             cCCcHHHHHHHHHHHHHHHHccHhhCCHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHccc-cccHHHHHH
Confidence            356889999999999877753    444   35667888877765533 346777777666665543322 467777777


Q ss_pred             HHhcCCC------ChHHHHHHHHhHHHHHHhhC-c-------------hhhHHHHHHHHHHhhcCC-C-------hhHHH
Q 009975          103 TQLCQDD------MPMVRRSAASNLGKFAATVE-P-------------AHLKTDIMSIFEDLTQDD-Q-------DSVRL  154 (521)
Q Consensus       103 ~~l~~~~------~~~vr~~a~~~l~~l~~~~~-~-------------~~~~~~l~~~l~~l~~d~-~-------~~vr~  154 (521)
                      .+.++.+      ++..+..+...|..+.+... .             ....+.+++++.+++.+. +       ..++.
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~~l~iL~~l~EEi~~~~~~~~r~~~~~~l~~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~  207 (971)
T 2x1g_F          128 INTFQNQRMPNVSADVQLWIMLEVLTAIPEEAQVIHTSVKRVVLRAEIAKRVQLVIHTVERYLKLQMNRVWDAEAYSNMN  207 (971)
T ss_dssp             HHHHHHTC----CHHHHHHHHHHHHHHHHHHHHHCCCSSCHHHHHHHHHTTHHHHHHHHHHHHHHHTTSCCCHHHHHHHH
T ss_pred             HHHHhccccccCCCHHHHHHHHHHHHHhHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccchhHHH
Confidence            7766543      56788888888888875421 0             012345666666655432 1       16888


Q ss_pred             HHHHHHHHHhh--hcChhhhhhhhHHHHHHh----c-----------CCCChHHHHHHHHHHHHHHHHhCCCcc---ccc
Q 009975          155 LAVEGCAALGK--LLEPQDCVAHILPVIVNF----S-----------QDKSWRVRYMVANQLYELCEAVGPEPT---RMD  214 (521)
Q Consensus       155 ~a~~~l~~l~~--~~~~~~~~~~l~~~l~~~----~-----------~d~~~~vR~~~~~~l~~i~~~~~~~~~---~~~  214 (521)
                      .+++++.....  .++.. ....+++.+..+    .           .++++.+|..+++++..+.........   ...
T Consensus       208 ~al~~l~~~~~~~~ip~~-~~~~ll~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~  286 (971)
T 2x1g_F          208 RAVKCVGTWIKNIGYTIE-GCVTITAVLLEVVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHNYPKTAFV  286 (971)
T ss_dssp             HHHHHHHHHHHHSCCCGG-GHHHHHHHHHHHHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGGCHHHHHH
T ss_pred             HHHHHHHHHHhhCCcCcc-ccccHHHHHHhhhhhhccccccccccccCcCCcHHHHHHHHHHHHHHcCccccccHHHHHH
Confidence            99999988776  34444 445566665541    1           125678999999999998863211111   122


Q ss_pred             hHHHHHH-------hcCCCh---HHHHHHHHHhHHHHHhhhCH-------------HHHHHhhhHHHHHhccC-----Cc
Q 009975          215 LVPAYVR-------LLRDNE---AEVRIAAAGKVTKFCRILNP-------------ELAIQHILPCVKELSSD-----SS  266 (521)
Q Consensus       215 l~~~l~~-------~l~d~~---~~vr~~a~~~l~~l~~~~~~-------------~~~~~~~~~~l~~~~~d-----~~  266 (521)
                      ++|.+..       ...+++   ........+.+..+++....             ......+++.+......     .+
T Consensus       287 l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~  366 (971)
T 2x1g_F          287 LIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSGITSADPELSILVHRIVQEILHCTDKPGIYPVE  366 (971)
T ss_dssp             HHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCSSCTTTT
T ss_pred             HHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHcCCCCCCcc
Confidence            3333332       223333   25555666777666643211             11223445555554322     45


Q ss_pred             HHHHHHHHHHHHcccccc-C-----h--------HHHHHhHHHHHHHhhc---CC-----C-------hHHHHHHHHHHH
Q 009975          267 QHVRSALASVIMGMAPLL-G-----K--------DATIEQLLPIFLSLLK---DE-----F-------PDVRLNIISKLD  317 (521)
Q Consensus       267 ~~vr~~~~~~l~~i~~~~-~-----~--------~~~~~~l~~~l~~~l~---d~-----~-------~~vr~~a~~~l~  317 (521)
                      +.+...+++.+..+++.. .     +        ......+++.+...+.   |.     +       ...|..+...+.
T Consensus       367 ~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~  446 (971)
T 2x1g_F          367 ESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYRQDISDTFM  446 (971)
T ss_dssp             CTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHHHHHHHHHHHH
Confidence            667788877776665411 1     0        1123345555555442   11     1       146778888888


Q ss_pred             HhhhhhchhhHhhhHHHHHHHHhcC-----CChHHHHHHHHHhHHHHhhhChh--hhHHHHHHHHHHHc-CCCcHHHHHH
Q 009975          318 QVNQVIGIDLLSQSLLPAIVELAED-----RHWRVRLAIIEYIPLLASQLGVG--FFDDKLGALCMQWL-QDKVYSIRDA  389 (521)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l-~d~~~~vr~~  389 (521)
                      .++...|.+ ..+.+++.+.+.+..     .+|+.|.+++.+++.+++.+...  ...+.+++.+..+. .|+++.||..
T Consensus       447 ~~~~~~~~~-~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~~l~~l~~~d~~~~vr~~  525 (971)
T 2x1g_F          447 YCYDVLNDY-ILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLMRVLAEIPYEKLNVKLLGT  525 (971)
T ss_dssp             HHHTTCTTH-HHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CHHHHHHHHHHHSCTTTSCHHHHHH
T ss_pred             HHHHHHhHH-HHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHhcCccccCHHHHHH
Confidence            888877733 336667776665543     79999999999999998877653  33455666444443 2679999999


Q ss_pred             HHHHHHHHHHHhCHHH-HHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChH--HHhhcHHHHHHhhcCC--CCchH
Q 009975          390 AANNLKRLAEEFGPEW-AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE--ITCSRLLPVVINASKD--RVPNI  464 (521)
Q Consensus       390 a~~~l~~l~~~~~~~~-~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~--~~~~~il~~l~~~l~d--~~~~V  464 (521)
                      ++.+++.+...++.+. +...+++.+...+ +  ++++..|+.++..+++.++..  .+.+.++..+...+..  .....
T Consensus       526 a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~  602 (971)
T 2x1g_F          526 ALETMGSYCNWLMENPAYIPPAINLLVRGL-N--SSMSAQATLGLKELCRDCQLQLKPYADPLLNACHASLNTGRMKNSD  602 (971)
T ss_dssp             HHHHHHHTHHHHC----CHHHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSTTSCHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHcCCCCChHH
Confidence            9999999998876432 3456777777777 3  789999999999999866543  2456677777777776  35688


Q ss_pred             HHHHHHHHHHHHhhhchH----HHHhhHHHHHH---HhcCCC--CccHHHHHHHHHHHHHHhhc
Q 009975          465 KFNVAKVLQSLIPIVDQS----MVEKTIRPCLV---ELTEDP--DVDVRFFATQAIQSIDHVMM  519 (521)
Q Consensus       465 R~~a~~~l~~~~~~~~~~----~~~~~~~~~l~---~l~~D~--~~~vr~~a~~al~~l~~~~~  519 (521)
                      |..+.++++.++...+.+    .+...+-|.+.   .+.+.+  +.+-+..+..+++.|..+++
T Consensus       603 ~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~  666 (971)
T 2x1g_F          603 SVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFS  666 (971)
T ss_dssp             HHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHh
Confidence            999999999998876522    23233333333   333332  44456677777777766543

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=99.64  E-value=1.8e-12  Score=139.16  Aligned_cols=477  Identities=12%  Similarity=0.082  Sum_probs=287.8

Q ss_pred             cCchhHHHHHHHHHHHHHHhh----cChh---HHHHhHHHHHHHhhcCCCCcchhhhhhhhhhhcCCC-ChHHHHHHHHH
Q 009975           30 TVEETCVRDKAVESLCRIGSQ----MRES---DLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSA-PDILKTELRSI  101 (521)
Q Consensus        30 ~~~~~~vR~~a~~~l~~i~~~----~~~~---~~~~~l~p~i~~~~~~~~~~~r~~~~~~~~~~~~~~-~~~~~~~l~~~  101 (521)
                      ++.+..+|..|...|...++.    ++++   .+++.+++.+.+..+ ....+|...+..+..++.+. ++. +..+++.
T Consensus        68 ~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir~~ll~~l~~~~~-~~~~ir~kl~~~la~i~~~~~p~~-Wp~~l~~  145 (963)
T 2x19_B           68 PDKVPEIQYFGASALHIKISRYWSDIPTDQYESLKAQLFTQITRFAS-GSKIVLTRLCVALASLALSMMPDA-WPCAVAD  145 (963)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHHCGGGSCGGGHHHHHHHHHHHHHHTTT-SCHHHHHHHHHHHHHHHHHHTTTT-STTHHHH
T ss_pred             CCCchHHHHHHHHHHHHHHHhCHHhCCHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHhCccc-cchHHHH
Confidence            356889999999999877764    4443   456777777765432 23567766666666655332 222 5677777


Q ss_pred             HHHhcCC-----CChHHHHHHHHhHHHHHHhhCc---------------hhhHHHHHHHHHHhhcCCCh--hHHHHHHHH
Q 009975          102 YTQLCQD-----DMPMVRRSAASNLGKFAATVEP---------------AHLKTDIMSIFEDLTQDDQD--SVRLLAVEG  159 (521)
Q Consensus       102 l~~l~~~-----~~~~vr~~a~~~l~~l~~~~~~---------------~~~~~~l~~~l~~l~~d~~~--~vr~~a~~~  159 (521)
                      +.++++.     +++..+..+...|..+.+....               ....+.+++++...+.+...  .++..++++
T Consensus       146 l~~~~~~~~~~~~~~~~~~~~l~iL~~l~ee~~~~~~~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~  225 (963)
T 2x19_B          146 MVRLFQAEDSPVDGQGRCLALLELLTVLPEEFQTSRLPQYRKGLVRTSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKC  225 (963)
T ss_dssp             HHHHHCC------CHHHHHHHHHHHHHHHHHHTTCCC---------CCSGGGHHHHHHHHHHHHSCTTCCHHHHHHHHHH
T ss_pred             HHHHHhhhccCCCcHHHHHHHHHHHHhCHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHH
Confidence            7776654     3667888888888888864311               12345677777777765432  377788888


Q ss_pred             HHHHhhhcChh-hhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCccc---cchHHHHHH-------hcCCChH
Q 009975          160 CAALGKLLEPQ-DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR---MDLVPAYVR-------LLRDNEA  228 (521)
Q Consensus       160 l~~l~~~~~~~-~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~---~~l~~~l~~-------~l~d~~~  228 (521)
                      +..... ++.. .....+++.+...+.  ++.+|..+++++..+..........   ..+++.+..       ...+++.
T Consensus       226 l~~wi~-~~~~~~~~~~ll~~l~~~l~--~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~  302 (963)
T 2x19_B          226 FSSWVQ-LEVPLQDCEALIQAAFAALQ--DSELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGDM  302 (963)
T ss_dssp             HHHHHT-SSCCGGGTHHHHHHHHHHTT--STTTHHHHHHHHHHHHTCTTGGGCHHHHHHHHHHHHTTHHHHHHHHHTTCH
T ss_pred             HHHHHc-CCCCcccchHHHHHHHHHhC--CchHHHHHHHHHHHHHcccccccCHHHHHHHHHHHHhhHHHHHHHHHCCCH
Confidence            765554 3221 122556777777664  5678999999999887532211111   112222222       1222233


Q ss_pred             HHHHHHHHhHHHHHhhhCH--------HHHHHhhhHHHHHhccC-----CcHHHHHHHHHHHHcccccc---C----h--
Q 009975          229 EVRIAAAGKVTKFCRILNP--------ELAIQHILPCVKELSSD-----SSQHVRSALASVIMGMAPLL---G----K--  286 (521)
Q Consensus       229 ~vr~~a~~~l~~l~~~~~~--------~~~~~~~~~~l~~~~~d-----~~~~vr~~~~~~l~~i~~~~---~----~--  286 (521)
                      ......++.+..+++....        ......+++.+.....+     .++.+...++..+..++...   .    .  
T Consensus       303 ~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~  382 (963)
T 2x19_B          303 ETSHGICRIAVALGENHSRALLDQVEHWQSFLALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVY  382 (963)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHcCccchHHHHHHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHH
Confidence            4444455666665543211        11223455555555543     24445555555555444311   0    0  


Q ss_pred             ----HHHHHhHHHHHHHhhcCCC---------------hHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHh----cCC
Q 009975          287 ----DATIEQLLPIFLSLLKDEF---------------PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELA----EDR  343 (521)
Q Consensus       287 ----~~~~~~l~~~l~~~l~d~~---------------~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~----~~~  343 (521)
                          ......+++.+...+.-++               .+.|..+...+..++...+.+.+ +.+.+.+.+.+    .+.
T Consensus       383 ~~~~~~~l~~l~~~ll~~~~~p~~~~~~~~~~de~~~~~~~r~~~~~~L~~~~~~~~~~~l-~~~~~~l~~~l~~~~~~~  461 (963)
T 2x19_B          383 QQVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQFRIYRVDISDTLMYVYEMLGAELL-SNLYDKLGRLLTSSEEPY  461 (963)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSCCCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHH-HHHHHHHHHHHHTCCCSC
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHccHHHH-HHHHHHHHHHHHhcCCCC
Confidence                1122344555554443211               12367777777777777764433 56667776666    678


Q ss_pred             ChHHHHHHHHHhHHHHhhhChh--hhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHH-HHHhhhHHHHHhhhcC
Q 009975          344 HWRVRLAIIEYIPLLASQLGVG--FFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE-WAMQHITPQVLEMINN  420 (521)
Q Consensus       344 ~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~-~~~~~l~~~l~~~l~~  420 (521)
                      +|+.|.+++.+++.+++.+..+  .+.+.+++.+.. +.++++.||..++.+++.+.+.++.+ .+...+++.+...+.+
T Consensus       462 ~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~~-l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~~  540 (963)
T 2x19_B          462 SWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIPR-ISISNVQLADTVMFTIGALSEWLADHPVMINSVLPLVLHALGN  540 (963)
T ss_dssp             CHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGGG-SCCCSHHHHHHHHHHHHHTHHHHHHCHHHHTTTHHHHHHHTTC
T ss_pred             chHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHh-CCCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCC
Confidence            9999999999999999887652  344456664433 34568889999999999998876532 3567788888888866


Q ss_pred             cchHHHHHHHHHHHHhhcccChH--HHhhcHHHHHHhhcCC--CCchHHHHHHHHHHHHHhhhchHH---HHhhHHHHHH
Q 009975          421 PHYLYRMTILRAISLLAPVMGSE--ITCSRLLPVVINASKD--RVPNIKFNVAKVLQSLIPIVDQSM---VEKTIRPCLV  493 (521)
Q Consensus       421 ~~~~~r~~a~~~l~~l~~~~~~~--~~~~~il~~l~~~l~d--~~~~VR~~a~~~l~~~~~~~~~~~---~~~~~~~~l~  493 (521)
                        +.++..|+.++..+++.++..  .+.+.++..+...+..  .....|..+.++++.++...+.+.   +...+++.+.
T Consensus       541 --~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~  618 (963)
T 2x19_B          541 --PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYI  618 (963)
T ss_dssp             --GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred             --chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence              789999999999999765543  2345666667666664  356889999999999987665222   2233333222


Q ss_pred             ----Hhc-CCCCccHHHHHHHHHHHHH
Q 009975          494 ----ELT-EDPDVDVRFFATQAIQSID  515 (521)
Q Consensus       494 ----~l~-~D~~~~vr~~a~~al~~l~  515 (521)
                          .+. ++.+++.+......++.+.
T Consensus       619 ~~l~~~~~~~~~~~~~~~~~~~l~~l~  645 (963)
T 2x19_B          619 QQLEKLAEEIPNPSNKLAIVHILGLLS  645 (963)
T ss_dssp             HHHHHHHSSCSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence                222 2335666665545554443

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=99.61  E-value=2.1e-12  Score=126.48  Aligned_cols=342  Identities=15%  Similarity=0.152  Sum_probs=219.3

Q ss_pred             hhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhC---CCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHH--
Q 009975          174 AHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG---PEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE--  248 (521)
Q Consensus       174 ~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--  248 (521)
                      ..-+|.+..++.++++.++..++.++..++..-.   ........+|.+++++++++..++..|+.+|..++..-+.+  
T Consensus        47 ~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk  126 (584)
T 3l6x_A           47 QPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNK  126 (584)
T ss_dssp             CCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHH
T ss_pred             cccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHH
Confidence            3355666666666667777777776666653100   11122456777777777777778888887777776531111  


Q ss_pred             -HH-HHhhhHHHHHhccC-CcHHHHHHHHHHHHccccccC-hHHHHHhHHHHHHHhh------------------cCCCh
Q 009975          249 -LA-IQHILPCVKELSSD-SSQHVRSALASVIMGMAPLLG-KDATIEQLLPIFLSLL------------------KDEFP  306 (521)
Q Consensus       249 -~~-~~~~~~~l~~~~~d-~~~~vr~~~~~~l~~i~~~~~-~~~~~~~l~~~l~~~l------------------~d~~~  306 (521)
                       .+ ..-.+|.+..++.+ .+..++..++.++..++..-. +..+.+..+|.+..++                  ..+++
T Consensus       127 ~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~  206 (584)
T 3l6x_A          127 IAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWE  206 (584)
T ss_dssp             HHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHHHTHHHHHHHTHHHHHCCC----------CCCCH
T ss_pred             HHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhccHHHHHHHHhcccccccccccccccccccccH
Confidence             11 12356666666654 466677777777777765321 1222334466666654                  12356


Q ss_pred             HHHHHHHHHHHHhhhhhc--hhhHh--hhHHHHHHHHhc------CCChHHHHHHHHHhHHHHhhhC-------------
Q 009975          307 DVRLNIISKLDQVNQVIG--IDLLS--QSLLPAIVELAE------DRHWRVRLAIIEYIPLLASQLG-------------  363 (521)
Q Consensus       307 ~vr~~a~~~l~~~~~~~~--~~~~~--~~~~~~l~~~~~------~~~~~vr~~~~~~l~~l~~~~~-------------  363 (521)
                      .|+..|..+|..+...-.  ...+.  ..+++.+..++.      +.+......++..|..++....             
T Consensus       207 ~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~  286 (584)
T 3l6x_A          207 SVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAA  286 (584)
T ss_dssp             HHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC-----
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhc
Confidence            888888888887764321  11111  244555555443      2455666666666655543321             


Q ss_pred             --------------hh-hhHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHHHHHhCH---H---HH-HhhhHHHHHhhhcC
Q 009975          364 --------------VG-FFDDKLGALCMQWLQD-KVYSIRDAAANNLKRLAEEFGP---E---WA-MQHITPQVLEMINN  420 (521)
Q Consensus       364 --------------~~-~~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~---~---~~-~~~l~~~l~~~l~~  420 (521)
                                    .+ .+....++.++.++++ .++.++++|+.+|..++..-+.   .   .+ ....+|.|.+++.+
T Consensus       287 ~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s  366 (584)
T 3l6x_A          287 PNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTN  366 (584)
T ss_dssp             ---------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGC
T ss_pred             ccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcC
Confidence                          11 1224567788888853 5799999999999999742211   1   11 24569999999999


Q ss_pred             cchHHHHHHHHHHHHhhcccCh-HHHhhcHHHHHHhhcCCC--------CchHHHHHHHHHHHHHhhhc---hHHHHhhH
Q 009975          421 PHYLYRMTILRAISLLAPVMGS-EITCSRLLPVVINASKDR--------VPNIKFNVAKVLQSLIPIVD---QSMVEKTI  488 (521)
Q Consensus       421 ~~~~~r~~a~~~l~~l~~~~~~-~~~~~~il~~l~~~l~d~--------~~~VR~~a~~~l~~~~~~~~---~~~~~~~~  488 (521)
                      ++..++..++.+|+.++..-.. ..+....+|.++.+|.++        ...+...++.+|+.++..-.   ........
T Consensus       367 ~~~~v~~~A~~aL~nLs~~~~~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~  446 (584)
T 3l6x_A          367 EHERVVKAASGALRNLAVDARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQG  446 (584)
T ss_dssp             SCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTH
T ss_pred             CCHHHHHHHHHHHHHHhCChhHHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCC
Confidence            9999999999999999974433 345677899999999876        35788899999998875321   12334667


Q ss_pred             HHHHHHhcCCC--CccHHHHHHHHHHHHH
Q 009975          489 RPCLVELTEDP--DVDVRFFATQAIQSID  515 (521)
Q Consensus       489 ~~~l~~l~~D~--~~~vr~~a~~al~~l~  515 (521)
                      +|.|..++.+.  ..+++..|++++..+.
T Consensus       447 I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~  475 (584)
T 3l6x_A          447 IEKLVLINKSGNRSEKEVRAAALVLQTIW  475 (584)
T ss_dssp             HHHHHHHHTCSSSCHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHhCCCCChHHHHHHHHHHHHHH
Confidence            89999987765  8899999999999875

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.61  E-value=2.8e-13  Score=121.32  Aligned_cols=225  Identities=13%  Similarity=0.103  Sum_probs=157.2

Q ss_pred             HHHHHHhhcCCChHHHHHHHHHHHHhhhhhch---hhHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhCh---hhh
Q 009975          294 LPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---GFF  367 (521)
Q Consensus       294 ~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~---~~~  367 (521)
                      +|.+..+++++++++|..|+.++..++..-..   .......+|.+.++++++++.+|..++.++..++.....   ...
T Consensus         4 i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~   83 (252)
T 4hxt_A            4 VEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIV   83 (252)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence            56666666666677777777777666543221   112235667777777777777777777777666543111   112


Q ss_pred             HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhC---HHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccCh--
Q 009975          368 DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFG---PEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS--  442 (521)
Q Consensus       368 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~--  442 (521)
                      ....+|.+..+++++++.+|..++.+++.++....   ........+|.+.+++.++++.+|..++.+++.++.....  
T Consensus        84 ~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~  163 (252)
T 4hxt_A           84 DAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAI  163 (252)
T ss_dssp             HTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred             HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence            23467788888888888888888888888874211   1122345788888899999999999999999998863221  


Q ss_pred             -HHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhch---HHHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHHhh
Q 009975          443 -EITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ---SMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVM  518 (521)
Q Consensus       443 -~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~---~~~~~~~~~~l~~l~~D~~~~vr~~a~~al~~l~~~~  518 (521)
                       .......+|.+..++.++++.+|..++.+|+.++.....   ......++|.|.+++.++++++|..|.+++..+...-
T Consensus       164 ~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~  243 (252)
T 4hxt_A          164 KAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGG  243 (252)
T ss_dssp             HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCC
Confidence             123456889999999999999999999999998863221   1223567888888888999999999999999887654

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=99.60  E-value=9.3e-12  Score=131.36  Aligned_cols=480  Identities=9%  Similarity=0.062  Sum_probs=276.7

Q ss_pred             chhHHhhhhHHhhhhc-CchhHHHHHHHHHHHHHHhhcChhHHHHhHHHHHHHhhcCC---CCcchhhhhhhhhhhcCCC
Q 009975           15 VEHAHVLLPPLETLCT-VEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGE---WFTARVSACGLFHIAYPSA   90 (521)
Q Consensus        15 ~~~~~~l~~~l~~l~~-~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~p~i~~~~~~~---~~~~r~~~~~~~~~~~~~~   90 (521)
                      |.-...+...+....+ +.|+..|+.|.+.|..+=+.  ++ .+....    .+..+.   +..+|..+...+......+
T Consensus         2 ~m~~~~v~~Al~~~~~p~sd~~~r~~A~~~L~~~q~s--p~-aw~~~~----~iL~~~~~~~~~vr~fa~~~L~~~I~~l   74 (980)
T 3ibv_A            2 PMSAQDVENAVEAALDPSVGPIIKQQATDFIGSLRSS--ST-GWKICH----EIFSEKTKYKPSTRLICLQTLSEKVREW   74 (980)
T ss_dssp             -CHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHS--TT-HHHHHH----HHTTCTTTSCHHHHHHHHHHHHHHHHHC
T ss_pred             CCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHcC--hh-HHHHHH----HHHhCCCCCCHHHHHHHHHHHHHHHHhC
Confidence            3344556666654443 44789999999888877654  22 233333    333322   4677877776665544344


Q ss_pred             ChH--------HHHHHHHHHHHhcC-CCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCCCh-hHHHHHHHHH
Q 009975           91 PDI--------LKTELRSIYTQLCQ-DDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQD-SVRLLAVEGC  160 (521)
Q Consensus        91 ~~~--------~~~~l~~~l~~l~~-~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~-~vr~~a~~~l  160 (521)
                      +++        .++.+++.+..... +..+.||...+.++..++....+ ..|+.+++.+..+.+.++. ..-....+++
T Consensus        75 ~~e~~~~~~~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p-~~Wp~~i~~l~~~~~~~~~~~~~~~~LriL  153 (980)
T 3ibv_A           75 NNESNLLELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYP-SNWNDFFASLQGVIAASSQSEFSNFYLKVL  153 (980)
T ss_dssp             CTTTSHHHHHHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTT-TTCTTHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred             ChhhhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCc-ccCchHHHHHHHHhcCCChhHHHHHHHHHH
Confidence            433        34445555544211 34578999999999999987543 4577777777776654333 2233344444


Q ss_pred             HHHhhhcChhhhhhhhHHHHHHhcCCCChHHHHHHHHH-HHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHH
Q 009975          161 AALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQ-LYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVT  239 (521)
Q Consensus       161 ~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~-l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~  239 (521)
                      ..+.+.+.+..    + +. ..........+|...... +..+.         +..+..+.+.....++.++..+++++.
T Consensus       154 ~~i~EEv~~~~----~-~~-~~~~~~r~~~lkd~m~~~~~~~i~---------~~~~~iL~~~~~~~~~~l~~~~L~~l~  218 (980)
T 3ibv_A          154 LSIGDEIADSL----V-LK-TDVQIQKDNLVKDAIRANDMSDIV---------SFVYEMMLAYSNAKNYGTVGLCLQVYA  218 (980)
T ss_dssp             HHHHHHHCCCC----S-CC-CHHHHHHHHHHHHHHHHHTHHHHH---------HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHhHHHHHhcc----c-cc-CHHHHhhhHHHHHHHHhccHHHHH---------HHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence            44444332110    0 00 000000000111111110 11111         122233333333345678888888888


Q ss_pred             HHHhhhCHHHHH-HhhhHHHHHhccCCcHHHHHHHHHHHHccccccChHHHHHhHHH------HHHHhhc-CCChHHHHH
Q 009975          240 KFCRILNPELAI-QHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLP------IFLSLLK-DEFPDVRLN  311 (521)
Q Consensus       240 ~l~~~~~~~~~~-~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~------~l~~~l~-d~~~~vr~~  311 (521)
                      .....++...+. ..+++.+.+.+.+  +.+|.++++++..+...-.+......++.      .+..+.. +.+.+++++
T Consensus       219 s~i~wi~~~~i~~~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~~~~~l~~~~~D~d~~~~  296 (980)
T 3ibv_A          219 QWVSWININLIVNEPCMNLLYSFLQI--EELRCAACETMTEIVNKKMKPLEKLNLLNILNLNLFFSKSQEQSTDPNFDEH  296 (980)
T ss_dssp             HHTTTSCHHHHHCHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHCC-----CCHHHHHH
T ss_pred             HHHhhcCHHhhhcchHHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHHHHHHHhcccccHHHHHH
Confidence            888877665432 4567777777765  67888999988887654332211112221      1111111 456666655


Q ss_pred             HHHHHHHhhhhh-----ch-----h------hHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhh---Ch-----h--
Q 009975          312 IISKLDQVNQVI-----GI-----D------LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL---GV-----G--  365 (521)
Q Consensus       312 a~~~l~~~~~~~-----~~-----~------~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~---~~-----~--  365 (521)
                      .++-+..++..+     .+     +      .....++|.+..+..++++.+-..++..+..+....   +.     +  
T Consensus       297 la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l~~~~~~~~~~~~~~~~  376 (980)
T 3ibv_A          297 VAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLLVSLRKESSSKELSASL  376 (980)
T ss_dssp             HHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHHHHHHHHHTTSCCCCHHH
T ss_pred             HHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHhccccccccHHH
Confidence            554443332210     11     0      122567888888888888888777777766655432   11     1  


Q ss_pred             -hhHHHHHHHHHHHcC-------CC---------cHHHHHHHHHHHHHHHHHhCHHHHHh----hhHHHHHhhhc---Cc
Q 009975          366 -FFDDKLGALCMQWLQ-------DK---------VYSIRDAAANNLKRLAEEFGPEWAMQ----HITPQVLEMIN---NP  421 (521)
Q Consensus       366 -~~~~~l~~~l~~~l~-------d~---------~~~vr~~a~~~l~~l~~~~~~~~~~~----~l~~~l~~~l~---~~  421 (521)
                       .+...+++.+..-+.       |.         ..+.|.... .+...+..+|++...+    .+.+.+.+.+.   +.
T Consensus       377 ~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~-~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~~  455 (980)
T 3ibv_A          377 KEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLK-IFQDTINSIDSSLFSSYMYSAITSSLSTAATLSPEN  455 (980)
T ss_dssp             HHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHH-HHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSCHHH
T ss_pred             HHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHH-HHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCC
Confidence             223334455444433       11         124666666 6667777778776666    55555555552   46


Q ss_pred             chHHHHHHHHHHHHhhcccChH--------HHhhcHHHHHHhhcC-----CCCchHHHHHHHHHHHHHhhhchH-HHHhh
Q 009975          422 HYLYRMTILRAISLLAPVMGSE--------ITCSRLLPVVINASK-----DRVPNIKFNVAKVLQSLIPIVDQS-MVEKT  487 (521)
Q Consensus       422 ~~~~r~~a~~~l~~l~~~~~~~--------~~~~~il~~l~~~l~-----d~~~~VR~~a~~~l~~~~~~~~~~-~~~~~  487 (521)
                      +|+.+++++.+++.+++.+...        ...+.+++.+..+++     ++++.||..++++++...+.+... .+.+.
T Consensus       456 ~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~~~l~~  535 (980)
T 3ibv_A          456 SWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYESAAIPA  535 (980)
T ss_dssp             HHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTCCTTHHH
T ss_pred             CHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcCchhHHH
Confidence            7999999999999999865531        224467777777755     889999999999999999987642 23344


Q ss_pred             HHHHHHH--hcCCCCccHHHHHHHHHHHHHHhhcc
Q 009975          488 IRPCLVE--LTEDPDVDVRFFATQAIQSIDHVMMS  520 (521)
Q Consensus       488 ~~~~l~~--l~~D~~~~vr~~a~~al~~l~~~~~~  520 (521)
                      +++.+..  ...+++..||..|+.++.++++.+++
T Consensus       536 ~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~  570 (980)
T 3ibv_A          536 LIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKK  570 (980)
T ss_dssp             HHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHhccccccCCChhHHHHHHHHHHHHHHHhhH
Confidence            4444444  45688999999999999999987654

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=99.60  E-value=6.3e-13  Score=129.32  Aligned_cols=147  Identities=11%  Similarity=0.078  Sum_probs=109.2

Q ss_pred             HHHHHHHHHHHcCC-CcHHHHHHHHHHHHHHHHHhCHH-------HH-HhhhHHHHHhhhcCcchHHHHHHHHHHHHhhc
Q 009975          368 DDKLGALCMQWLQD-KVYSIRDAAANNLKRLAEEFGPE-------WA-MQHITPQVLEMINNPHYLYRMTILRAISLLAP  438 (521)
Q Consensus       368 ~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~-------~~-~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~  438 (521)
                      ....++.+..++.+ .++.++++|+.+|..++..-+..       .+ ....+|.|.+++.+++..+|..|+++++.++.
T Consensus       281 ~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~  360 (457)
T 1xm9_A          281 HSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSR  360 (457)
T ss_dssp             SHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred             CcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhc
Confidence            34567777777765 46899999999999987533221       12 24678999999999999999999999999986


Q ss_pred             ccCh-HHHhhcHHHHHHhhcCCCCc------hHHHHHHHHHHHHHhhhchH---HHHhhHHHHHHHhcCCC-CccHHHHH
Q 009975          439 VMGS-EITCSRLLPVVINASKDRVP------NIKFNVAKVLQSLIPIVDQS---MVEKTIRPCLVELTEDP-DVDVRFFA  507 (521)
Q Consensus       439 ~~~~-~~~~~~il~~l~~~l~d~~~------~VR~~a~~~l~~~~~~~~~~---~~~~~~~~~l~~l~~D~-~~~vr~~a  507 (521)
                      .-.. ..+....+|.++++|..+++      .+...++.+++.+...-+..   ......+|.|.++.... +.+++..|
T Consensus       361 ~~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A  440 (457)
T 1xm9_A          361 HPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAA  440 (457)
T ss_dssp             SGGGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CHHHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHH
Confidence            3221 22346788999999988754      57778889998887543221   12255788888888777 88999999


Q ss_pred             HHHHHHH
Q 009975          508 TQAIQSI  514 (521)
Q Consensus       508 ~~al~~l  514 (521)
                      .+.+..+
T Consensus       441 ~~~L~~~  447 (457)
T 1xm9_A          441 RLLLSDM  447 (457)
T ss_dssp             HHHHHTT
T ss_pred             HHHHHHH
Confidence            9998765

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=99.59  E-value=9.1e-14  Score=122.72  Aligned_cols=199  Identities=15%  Similarity=0.132  Sum_probs=159.6

Q ss_pred             hHHHHHHHhhcCCChHHHHHHHHHHHH-hhhhhc-----hhhHhhhHHHHHHHHh-cCCChHHHHHHHHHhHHHHhhhC-
Q 009975          292 QLLPIFLSLLKDEFPDVRLNIISKLDQ-VNQVIG-----IDLLSQSLLPAIVELA-EDRHWRVRLAIIEYIPLLASQLG-  363 (521)
Q Consensus       292 ~l~~~l~~~l~d~~~~vr~~a~~~l~~-~~~~~~-----~~~~~~~~~~~l~~~~-~~~~~~vr~~~~~~l~~l~~~~~-  363 (521)
                      .+-+-|...+.+.++..|..++..+.. +++...     ...+ ..++..+.+.+ +|.+..+|..++.+++.+++.++ 
T Consensus        16 kl~~~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~-~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~   94 (249)
T 2qk1_A           16 KLPKDFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNY-SNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKT   94 (249)
T ss_dssp             GSCTTHHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCC-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCT
T ss_pred             hCChhHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccH-HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccc
Confidence            344455667788889999999988888 764311     1122 46677888877 79999999999999999999887 


Q ss_pred             hh---hhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHHH---HHhhhHHHHHhhhcCcchHHHHHHHHHHHHhh
Q 009975          364 VG---FFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW---AMQHITPQVLEMINNPHYLYRMTILRAISLLA  437 (521)
Q Consensus       364 ~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~---~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~  437 (521)
                      +.   .|...++|.++..++|....||.++..++..++...++..   ..+.+++.+...+++++|.+|+.++.+++.++
T Consensus        95 ~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~  174 (249)
T 2qk1_A           95 PGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASM  174 (249)
T ss_dssp             TTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence            43   4556689999999999999999999999999998874211   14468888899999999999999999999999


Q ss_pred             cccCh--H---HHh-hcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchHHHHhhHHHHHHHh
Q 009975          438 PVMGS--E---ITC-SRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVEL  495 (521)
Q Consensus       438 ~~~~~--~---~~~-~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~~~~~~~~l~~l  495 (521)
                      ...+.  .   .+. +.++|.+.+++.|+.+.||.+|..+++.++..+|.+.+    .|.+..+
T Consensus       175 ~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~----~p~l~~L  234 (249)
T 2qk1_A          175 KEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTF----VKTLEHL  234 (249)
T ss_dssp             HHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGG----HHHHHHS
T ss_pred             HHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHHH----HHHHHHH
Confidence            87763  2   245 88999999999999999999999999999999997554    4444444

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.58  E-value=1e-11  Score=123.48  Aligned_cols=475  Identities=8%  Similarity=0.063  Sum_probs=297.9

Q ss_pred             CchhHHHHHHHHHHHHHHhhcChhHHHHhHHHHHHHhh----cCCCCcchhhhhhhhhhhcCCCChHH-----HHHHHHH
Q 009975           31 VEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLA----AGEWFTARVSACGLFHIAYPSAPDIL-----KTELRSI  101 (521)
Q Consensus        31 ~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~p~i~~~~----~~~~~~~r~~~~~~~~~~~~~~~~~~-----~~~l~~~  101 (521)
                      .+.+++|..++-.+..+-+..+ +...+.+.-++..++    .+....-...+...+..+++-.|+..     .+.+.+.
T Consensus       181 ~~~~~~~~~~l~i~~~~~~~~~-~~~~~~~~~~~~~l~~e~~~~~~~~~~~~~~~~l~~lfPi~p~~~s~lfl~e~~~~~  259 (778)
T 3opb_A          181 ISEDEVKSMMLIIFAELQSSFQ-KDFDKAVVDFMSSLIVEAEIDVGNDPLSIIVKTLSELYPSLTTLCSEIFLTKGLSKL  259 (778)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHTTTTHHHHHHHHSTTTHHHH
T ss_pred             cChhhhHHHHHHHHHHHHHhCc-hHHHHHHHHHHHHHHHhhccCCCCccHHHHHHHHHHHhcCCHHHHHHHHccccHHHH
Confidence            4556888888877777777654 555666667776554    12112233445566667777665441     1223455


Q ss_pred             HHHhc-CCCChHHHHHHHHhHHHHHHhhC-chhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcCh-hhhhhhhHH
Q 009975          102 YTQLC-QDDMPMVRRSAASNLGKFAATVE-PAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP-QDCVAHILP  178 (521)
Q Consensus       102 l~~l~-~~~~~~vr~~a~~~l~~l~~~~~-~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~-~~~~~~l~~  178 (521)
                      +.+.. +.++..+..++.+.+...+..-. .+.+.+...+++.+++++  +.+|..|.-+|..+...-.. +.....+.+
T Consensus       260 l~~~~~~~~~~~~~~a~L~lLsaACi~~~cR~~I~~~~~~~L~~~l~~--~~ir~lAavvL~KL~~~~~~~~~si~~La~  337 (778)
T 3opb_A          260 FKKRVFEEQDLQFTKELLRLLSSACIDETMRTYITENYLQLLERSLNV--EDVQIYSALVLVKTWSFTKLTCINLKQLSE  337 (778)
T ss_dssp             HHHHHHSSCCHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHTTS--GGGHHHHHHHHHHHTGGGTCTTCCHHHHHH
T ss_pred             HHHHHhcccchHHHHHHHHHHHHHhCCcHHHHHHHHhHHHHHHHHhcc--HHHHHHHHHHHHHHhcCCCCCcCcHHHHHH
Confidence            55443 44566666777666665542111 123455667888888865  57888888888888765432 233455888


Q ss_pred             HHHHhcCCCChHHHHHHHHHHHHHHHHhCCCc-----cccchHHHHHHhcCC-ChHHHHHHHHHhHHHHHhhhCHHH---
Q 009975          179 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEP-----TRMDLVPAYVRLLRD-NEAEVRIAAAGKVTKFCRILNPEL---  249 (521)
Q Consensus       179 ~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~-----~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~~---  249 (521)
                      .+.+++.+++...|..+++.|..+..  .++.     ....++..+++++++ ++..+-..++..|..+....+...   
T Consensus       338 ~~~~~L~~~~~~~~~~AvEgLaYLSl--~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~  415 (778)
T 3opb_A          338 IFINAISRRIVPKVEMSVEALAYLSL--KASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXX  415 (778)
T ss_dssp             HHHHHTTTCCHHHHHHHHHHHHHHTT--SSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCC
T ss_pred             HHHHHHhcCCccHHHHHHHHHHHHhC--CHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhh
Confidence            88888887766679999999987752  1111     124568888888885 566788888888888877653210   


Q ss_pred             -HHHhhhHHHHHhc----cCCcHHHHH-HHHH-HHHccccccChHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhh
Q 009975          250 -AIQHILPCVKELS----SDSSQHVRS-ALAS-VIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV  322 (521)
Q Consensus       250 -~~~~~~~~l~~~~----~d~~~~vr~-~~~~-~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~  322 (521)
                       -..++.++.....    .+....-.. .... ....+        ....++|.+..+++++++.+|..+++++..+...
T Consensus       416 ~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l--------~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d  487 (778)
T 3opb_A          416 XXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYI--------LRTELISFLKREMHNLSPNCKQQVVRIIYNITRS  487 (778)
T ss_dssp             C------------------CCTHHHHHHHHHHHHHHHT--------TTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTS
T ss_pred             hhhhhhhhhccccCcccCcccccccchHHHHHHHHHHH--------HHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC
Confidence             1111111111100    000100000 0000 00111        1234799999999999999999999999999754


Q ss_pred             hc--hhhHhhhHHHHHHHHhcCCChH---HHHHHHHHhHHHHhhhChhhhH-----HHHHHHHHHHcCC-CcH-------
Q 009975          323 IG--IDLLSQSLLPAIVELAEDRHWR---VRLAIIEYIPLLASQLGVGFFD-----DKLGALCMQWLQD-KVY-------  384 (521)
Q Consensus       323 ~~--~~~~~~~~~~~l~~~~~~~~~~---vr~~~~~~l~~l~~~~~~~~~~-----~~l~~~l~~~l~d-~~~-------  384 (521)
                      -.  .....+..++.+.+++.+....   .|..++.+|..+.-...+....     -..+|.+..+|.. +..       
T Consensus       488 ~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~  567 (778)
T 3opb_A          488 KNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHN  567 (778)
T ss_dssp             GGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---
T ss_pred             HHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccc
Confidence            22  1123457788888887665433   8999999998887554332211     1466777888872 221       


Q ss_pred             ------HHHHHHHHHHHHHHHHhCH---H----HHH-hhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccC---hHHHh-
Q 009975          385 ------SIRDAAANNLKRLAEEFGP---E----WAM-QHITPQVLEMINNPHYLYRMTILRAISLLAPVMG---SEITC-  446 (521)
Q Consensus       385 ------~vr~~a~~~l~~l~~~~~~---~----~~~-~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~---~~~~~-  446 (521)
                            --+..|+.+|..++..-+.   +    .+. ...+|.+.+++.+.+..+|.+|+++++.+...-.   .+++. 
T Consensus       568 ~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~  647 (778)
T 3opb_A          568 DEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNL  647 (778)
T ss_dssp             CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCC
T ss_pred             cccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhh
Confidence                  1266788898888864321   1    223 2588999999999999999999999999996322   12221 


Q ss_pred             --hc---HHHHHHhhcCCCCchHHHHHHHHHHHHHhhhch---HHHH-hhHHHHHHHhcCC--CCccHHHHHHHHHHHHH
Q 009975          447 --SR---LLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ---SMVE-KTIRPCLVELTED--PDVDVRFFATQAIQSID  515 (521)
Q Consensus       447 --~~---il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~---~~~~-~~~~~~l~~l~~D--~~~~vr~~a~~al~~l~  515 (521)
                        +.   =++.++.+++..+..+|.+|+.+|..+....+.   ..+. ...++.+..++.+  ++.++|..++.++..|.
T Consensus       648 ~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~  727 (778)
T 3opb_A          648 ENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLF  727 (778)
T ss_dssp             SSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred             cCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence              11   277899999999999999999999998653322   1222 2456666677777  89999999999999998


Q ss_pred             Hhh
Q 009975          516 HVM  518 (521)
Q Consensus       516 ~~~  518 (521)
                      ...
T Consensus       728 ~~~  730 (778)
T 3opb_A          728 EVI  730 (778)
T ss_dssp             TTC
T ss_pred             Hhh
Confidence            643

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=99.58  E-value=1.8e-11  Score=129.16  Aligned_cols=500  Identities=12%  Similarity=0.068  Sum_probs=290.6

Q ss_pred             hhHHhhhhHHhhhhcCchh-HHHHHHHHHHHHHHhhcChh----------H---HHH--------hHHHHHHHhh----c
Q 009975           16 EHAHVLLPPLETLCTVEET-CVRDKAVESLCRIGSQMRES----------D---LVD--------WYIPLVKRLA----A   69 (521)
Q Consensus        16 ~~~~~l~~~l~~l~~~~~~-~vR~~a~~~l~~i~~~~~~~----------~---~~~--------~l~p~i~~~~----~   69 (521)
                      +.|+.+++.+..+.+.++. ..-...++.+..+.+.+...          +   +.+        .+.+.+....    .
T Consensus       124 ~~Wp~~i~~l~~~~~~~~~~~~~~~~LriL~~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~  203 (980)
T 3ibv_A          124 SNWNDFFASLQGVIAASSQSEFSNFYLKVLLSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSN  203 (980)
T ss_dssp             TTCTTHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred             ccCchHHHHHHHHhcCCChhHHHHHHHHHHHHhHHHHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhc
Confidence            4555666666665554333 34455666666665654210          0   011        1122222222    2


Q ss_pred             CCCCcchhhhhhhhhhhcCCCChH--HHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCchhhHHHHHH------HH
Q 009975           70 GEWFTARVSACGLFHIAYPSAPDI--LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMS------IF  141 (521)
Q Consensus        70 ~~~~~~r~~~~~~~~~~~~~~~~~--~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~------~l  141 (521)
                      ..+...+..++..++....-.+..  ....+++.+.+++.+  +.+|..|+++|..++..-........++.      .+
T Consensus       204 ~~~~~l~~~~L~~l~s~i~wi~~~~i~~~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~~~  281 (980)
T 3ibv_A          204 AKNYGTVGLCLQVYAQWVSWININLIVNEPCMNLLYSFLQI--EELRCAACETMTEIVNKKMKPLEKLNLLNILNLNLFF  281 (980)
T ss_dssp             TTCHHHHHHHHHHHHHHTTTSCHHHHHCHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHhhcCHHhhhcchHHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHHHH
Confidence            234445566667777766655544  336788888888875  79999999999998876443222222222      22


Q ss_pred             HHhhc-CCChhHHHHHHHHHHHHhhh------cC----hh------hhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHH
Q 009975          142 EDLTQ-DDQDSVRLLAVEGCAALGKL------LE----PQ------DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCE  204 (521)
Q Consensus       142 ~~l~~-d~~~~vr~~a~~~l~~l~~~------~~----~~------~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~  204 (521)
                      ..+.. +++..++...++.+..+++.      .+    .+      .....+++.+.....+++.+|-..+..-+..+..
T Consensus       282 ~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l~  361 (980)
T 3ibv_A          282 SKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLLV  361 (980)
T ss_dssp             CC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHHHH
T ss_pred             HHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHH
Confidence            22222 44555655555555544433      11    00      2234588889999999888888877776666654


Q ss_pred             HhC---C-Cccc-------cchHHHHHHhcC-------C-----Ch----HHHHHHHHHhHHHHHhhhCHHHHHH----h
Q 009975          205 AVG---P-EPTR-------MDLVPAYVRLLR-------D-----NE----AEVRIAAAGKVTKFCRILNPELAIQ----H  253 (521)
Q Consensus       205 ~~~---~-~~~~-------~~l~~~l~~~l~-------d-----~~----~~vr~~a~~~l~~l~~~~~~~~~~~----~  253 (521)
                      ...   . ....       ..+++.+.+-++       |     ++    .+.|+... .+-.....++++.+.+    .
T Consensus       362 ~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~-~l~d~~~~l~~~~~l~~~~~~  440 (980)
T 3ibv_A          362 SLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLK-IFQDTINSIDSSLFSSYMYSA  440 (980)
T ss_dssp             HHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHH-HHHHHHHHHCHHHHHHHHHHH
T ss_pred             HHHhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHH-HHHHHHHhcChHHHHHHHHHH
Confidence            332   1 1111       223333333221       1     11    24666666 6666777778887777    6


Q ss_pred             hhHHHHHhc---cCCcHHHHHHHHHHHHccccccChH--------HHHHhHHHHHHHhhc-----CCChHHHHHHHHHHH
Q 009975          254 ILPCVKELS---SDSSQHVRSALASVIMGMAPLLGKD--------ATIEQLLPIFLSLLK-----DEFPDVRLNIISKLD  317 (521)
Q Consensus       254 ~~~~l~~~~---~d~~~~vr~~~~~~l~~i~~~~~~~--------~~~~~l~~~l~~~l~-----d~~~~vr~~a~~~l~  317 (521)
                      +.+.+.+.+   .+.+|+.+++++.+++.+++.+...        .....+++.+..+++     ++.+.||..+++.++
T Consensus       441 i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~  520 (980)
T 3ibv_A          441 ITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILV  520 (980)
T ss_dssp             HHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHH
Confidence            666666655   2467999999999999998876431        123357777777765     888999999999999


Q ss_pred             Hhhhhhchh-hHhhhHHHHHHH--HhcCCChHHHHHHHHHhHHHHhhhChhh--hHHHHHHHHHHHcCC---C-------
Q 009975          318 QVNQVIGID-LLSQSLLPAIVE--LAEDRHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLQD---K-------  382 (521)
Q Consensus       318 ~~~~~~~~~-~~~~~~~~~l~~--~~~~~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d---~-------  382 (521)
                      +..+.+... .+...+++.+..  .+.+++.+||.+++.++..+++.++...  +.+.++..+..++.-   +       
T Consensus       521 rys~~~~~~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~~~~~il~~l~~lL~~~~~~~~~~~~~  600 (980)
T 3ibv_A          521 RYASFFDYESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNYTESSLAMLGDLLNISVSPVTDMDAP  600 (980)
T ss_dssp             HTGGGGGTCCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSSSHHHHHHHTTGGGCCCCCCCCC--CS
T ss_pred             HHHHHHhcCchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHHhhcCcCCCCCccccc
Confidence            998877632 122444444444  4557889999999999999999987642  233344443333331   1       


Q ss_pred             -----------cHHHHHHHHHHHHHHHHHhCH--H---HHHhhhHHHH----HhhhcCc----chHH-HHHHHHHHHHhh
Q 009975          383 -----------VYSIRDAAANNLKRLAEEFGP--E---WAMQHITPQV----LEMINNP----HYLY-RMTILRAISLLA  437 (521)
Q Consensus       383 -----------~~~vr~~a~~~l~~l~~~~~~--~---~~~~~l~~~l----~~~l~~~----~~~~-r~~a~~~l~~l~  437 (521)
                                 ..+-+....+++|.++...+.  +   .+.+.+++.+    ...+...    +... -...+.+++.++
T Consensus       601 ~~~~~~~~~~~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~~ll~pl~~~l~~~l~~~~~~~~~~~~i~~~i~al~~la  680 (980)
T 3ibv_A          601 VPTLNSSIRNSDFNSQLYLFETVGVLISSGNLTPEEQALYCDSLINALIGKANAALSSDLSALENIISVYCSLMAIGNFA  680 (980)
T ss_dssp             SCCHHHHHHTTTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHHHHHH
T ss_pred             ccchhhhcccCCchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHh
Confidence                       123466688899999877652  1   1223343333    3333221    1111 225577778888


Q ss_pred             cccCh--------HHHhhcHHHHHHhhcC--CCCchHHHHHHHHHHHHHhhhchHHHHhhHHHHHHHhcCCCCccHHHHH
Q 009975          438 PVMGS--------EITCSRLLPVVINASK--DRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFA  507 (521)
Q Consensus       438 ~~~~~--------~~~~~~il~~l~~~l~--d~~~~VR~~a~~~l~~~~~~~~~~~~~~~~~~~l~~l~~D~~~~vr~~a  507 (521)
                      +.+..        .......++.+...+.  ..+..||.++..++..+...+|.+. .+.+-+.+..+..+-...--...
T Consensus       681 kgf~~~~~~~~p~~~~f~~~~~~il~~l~~~~~~~~irea~~~~~~r~i~~lg~~~-~p~lp~~i~~ll~~~~~~e~~~f  759 (980)
T 3ibv_A          681 KGFPARGSEEVAWLASFNKASDEIFLILDRMGFNEDIRGAVRFTSGRIINVVGPDM-LPKVPQLISILLNSIDMNELVDV  759 (980)
T ss_dssp             HTSCSCC-CCCSHHHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHTTTTHHHH-TTTHHHHHHHHHHHCCTTTHHHH
T ss_pred             ccCCcccCCCCcHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHhH-HHHHHHHHHHHHhcCCHHHHHHH
Confidence            75532        1123455666655554  4578899999999999999888763 24444444444433222223344


Q ss_pred             HHHHHHHHHhhc
Q 009975          508 TQAIQSIDHVMM  519 (521)
Q Consensus       508 ~~al~~l~~~~~  519 (521)
                      .+.++.+...++
T Consensus       760 L~l~~qli~~f~  771 (980)
T 3ibv_A          760 LSFISQLIHIYK  771 (980)
T ss_dssp             HHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHH
Confidence            555665555544

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=99.57  E-value=3.1e-11  Score=130.13  Aligned_cols=447  Identities=8%  Similarity=0.001  Sum_probs=284.4

Q ss_pred             cCchhHHHHHHHHHHHHHHhh----cChh---HHHHhHHHHHHHhhcCC-----CCcchhhhhhhhhhhcCCCChHHHHH
Q 009975           30 TVEETCVRDKAVESLCRIGSQ----MRES---DLVDWYIPLVKRLAAGE-----WFTARVSACGLFHIAYPSAPDILKTE   97 (521)
Q Consensus        30 ~~~~~~vR~~a~~~l~~i~~~----~~~~---~~~~~l~p~i~~~~~~~-----~~~~r~~~~~~~~~~~~~~~~~~~~~   97 (521)
                      ++.+..+|..|...|...+..    ++++   .+++.++..+.....+.     ...+|...+.++..++.+.-+..++.
T Consensus        59 ~s~~~~vr~~aa~~Lk~~i~~~W~~l~~~~~~~ir~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~Wp~  138 (1049)
T 3m1i_C           59 FSTNPQSKFIALSILDKLITRKWKLLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPE  138 (1049)
T ss_dssp             HCSCHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTT
T ss_pred             hCCCHHHHHHHHHHHHHHHHhhCccCCHHHHHHHHHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcccchH
Confidence            356889999999999877653    4443   45667777766544322     23566666666665554321123667


Q ss_pred             HHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCc---------------h---hhHHHHHHHHHHhhcC-CChhHHHHHHH
Q 009975           98 LRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP---------------A---HLKTDIMSIFEDLTQD-DQDSVRLLAVE  158 (521)
Q Consensus        98 l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~---------------~---~~~~~l~~~l~~l~~d-~~~~vr~~a~~  158 (521)
                      +++.+.+.++ .++..+..+...|..+.+.+..               +   ...+.+++.+.+.+.+ .+..++..+++
T Consensus       139 ll~~L~~~~~-~~~~~~~~~l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~  217 (1049)
T 3m1i_C          139 FIPELIGSSS-SSVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLE  217 (1049)
T ss_dssp             HHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred             HHHHHHHHHc-cChHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            7777777765 5566788888888888765431               0   1123445555555554 35678999999


Q ss_pred             HHHHHhhhcChhh-hhhhhHHHHHH-hcCCCChHHHHHHHHHHHHHHHHhCCCc---cccc-------hHHHHHH-----
Q 009975          159 GCAALGKLLEPQD-CVAHILPVIVN-FSQDKSWRVRYMVANQLYELCEAVGPEP---TRMD-------LVPAYVR-----  221 (521)
Q Consensus       159 ~l~~l~~~~~~~~-~~~~l~~~l~~-~~~d~~~~vR~~~~~~l~~i~~~~~~~~---~~~~-------l~~~l~~-----  221 (521)
                      ++......++... ..+.+++.+.. +.  .++.+|..+++++..++..--+..   ....       ++..+..     
T Consensus       218 ~l~~~l~wi~~~~~~~~~ll~~l~~~~l--~~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~~~l~~l~~si~p~  295 (1049)
T 3m1i_C          218 SLLRYLHWIPYRYIYETNILELLSTKFM--TSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPV  295 (1049)
T ss_dssp             HHHHHTTTSCTHHHHSSSHHHHHHTHHH--HSHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHHHHHHHHHHHHTCCT
T ss_pred             HHHHHHhhCCHHHHhhhhHHHHHHHHhC--CCHhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHHHHHHhhCCC
Confidence            9988777665332 33456666653 33  268899999999998886521111   0111       1221211     


Q ss_pred             ---------hcCCChHHHHHHHHHhHHHHHhhhC--------HHHHHHhhhHHHHHhccCCcHHHHHHHHHHHHcccccc
Q 009975          222 ---------LLRDNEAEVRIAAAGKVTKFCRILN--------PELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLL  284 (521)
Q Consensus       222 ---------~l~d~~~~vr~~a~~~l~~l~~~~~--------~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~  284 (521)
                               ...|.+.++....++.+..+++...        .......+++.+......++..+...+++.+..++...
T Consensus       296 ~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~d~~v~~~~lefw~~l~~~l  375 (1049)
T 3m1i_C          296 TADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADL  375 (1049)
T ss_dssp             TSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHH
T ss_pred             cccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHH
Confidence                     1235566666666666655554321        12233456777777666778888888888777765521


Q ss_pred             -----Ch---HHHHHhHHHHHHHhhcCC-------------------C---hHHHHHHHHHHHHhhhhhchhhHhhhHHH
Q 009975          285 -----GK---DATIEQLLPIFLSLLKDE-------------------F---PDVRLNIISKLDQVNQVIGIDLLSQSLLP  334 (521)
Q Consensus       285 -----~~---~~~~~~l~~~l~~~l~d~-------------------~---~~vr~~a~~~l~~~~~~~~~~~~~~~~~~  334 (521)
                           ..   ......+++.+...+.-+                   +   ...|+.+...+..++...+ ....+.+.+
T Consensus       376 ~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~~~~~-~~~l~~v~~  454 (1049)
T 3m1i_C          376 FYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNV-IDTEEIMIS  454 (1049)
T ss_dssp             HHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHHHHHHHCH-HHHHHHHHH
T ss_pred             HhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHHHHHHHccCH-HHHHHHHHH
Confidence                 11   123445666666654211                   1   1346667777777765444 333366677


Q ss_pred             HHHHHhc--CCChHHHHHHHHHhHHHHhhhChh---hhHHHHHHHHHHHcC-----CCcHHHHHHHHHHHHHHHHHhCHH
Q 009975          335 AIVELAE--DRHWRVRLAIIEYIPLLASQLGVG---FFDDKLGALCMQWLQ-----DKVYSIRDAAANNLKRLAEEFGPE  404 (521)
Q Consensus       335 ~l~~~~~--~~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~-----d~~~~vr~~a~~~l~~l~~~~~~~  404 (521)
                      .+.+.+.  ..+|+.|.+++.+++.++..++..   .+.+.+++.+..+..     |+.+.+|..++.+++.+...+...
T Consensus       455 ~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~  534 (1049)
T 3m1i_C          455 KLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAH  534 (1049)
T ss_dssp             HHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHC
T ss_pred             HHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhH
Confidence            7776664  478999999999999998777654   335566666666432     456677777889999887665332


Q ss_pred             -HHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChHH----------HhhcHHHHHHhhcCCCCchHHHHHHHHHH
Q 009975          405 -WAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI----------TCSRLLPVVINASKDRVPNIKFNVAKVLQ  473 (521)
Q Consensus       405 -~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~----------~~~~il~~l~~~l~d~~~~VR~~a~~~l~  473 (521)
                       .+...+++.+.+.+.+++.++|..|+.++..+++.++...          +.+.++..+...+.+....-+....++++
T Consensus       535 ~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~  614 (1049)
T 3m1i_C          535 WNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACG  614 (1049)
T ss_dssp             HHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence             2456678888888899999999999999999998776542          34556666666677666666778889999


Q ss_pred             HHHhhhc
Q 009975          474 SLIPIVD  480 (521)
Q Consensus       474 ~~~~~~~  480 (521)
                      .++...+
T Consensus       615 ~ii~~~~  621 (1049)
T 3m1i_C          615 IIISEER  621 (1049)
T ss_dssp             HHHHTCC
T ss_pred             HHHHcCC
Confidence            9987766

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.57  E-value=1.7e-13  Score=122.74  Aligned_cols=224  Identities=16%  Similarity=0.118  Sum_probs=172.6

Q ss_pred             HHHHHHHhhcCCChHHHHHHHHHHHHhhhhhch---hhHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhCh---hh
Q 009975          293 LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---GF  366 (521)
Q Consensus       293 l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~---~~  366 (521)
                      -.+.+...++++++++|..|+.++..+...-..   .......+|.+.++++++++.+|..++.++..++.....   ..
T Consensus        13 ~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i   92 (252)
T 4db8_A           13 ELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAV   92 (252)
T ss_dssp             SHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred             hHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence            467788888899999999999999766553111   122356788999999998899999999998888753221   12


Q ss_pred             hHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCH---HHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccCh-
Q 009975          367 FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP---EWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS-  442 (521)
Q Consensus       367 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~-  442 (521)
                      .....+|.+..+++++++.+|..|+.+|+.+......   .......+|.+.+++.++++.+|..++.+++.++..... 
T Consensus        93 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~  172 (252)
T 4db8_A           93 IDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ  172 (252)
T ss_dssp             HHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred             HHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHH
Confidence            2234788999999999999999999999998753321   123456899999999999999999999999999863221 


Q ss_pred             --HHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhch---HHHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 009975          443 --EITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ---SMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDH  516 (521)
Q Consensus       443 --~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~---~~~~~~~~~~l~~l~~D~~~~vr~~a~~al~~l~~  516 (521)
                        .......+|.+..++.++++.+|..++.+|+.++.....   .......+|.|.+++.+.++++|..|++++..+..
T Consensus       173 ~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~  251 (252)
T 4db8_A          173 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS  251 (252)
T ss_dssp             HHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred             HHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence              113366889999999999999999999999999853221   12345688999999999999999999999988753

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=99.56  E-value=1.7e-12  Score=126.35  Aligned_cols=148  Identities=12%  Similarity=0.050  Sum_probs=108.6

Q ss_pred             hhHHHHHHHHhcC-CChHHHHHHHHHhHHHHhhhChh-------hh-HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHH
Q 009975          330 QSLLPAIVELAED-RHWRVRLAIIEYIPLLASQLGVG-------FF-DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEE  400 (521)
Q Consensus       330 ~~~~~~l~~~~~~-~~~~vr~~~~~~l~~l~~~~~~~-------~~-~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~  400 (521)
                      ...++.+..++.+ +++.++..++.++..++..-+..       .+ ....+|.+..++.+++..++..|+.+|..+...
T Consensus       282 ~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~  361 (457)
T 1xm9_A          282 SDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH  361 (457)
T ss_dssp             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS
T ss_pred             cchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcC
Confidence            4556777776644 56899999999998887543321       11 134679999999999999999999999999763


Q ss_pred             hCH-HHHHhhhHHHHHhhhcCcc------hHHHHHHHHHHHHhhcccChH---HHhhcHHHHHHhhcCCC-CchHHHHHH
Q 009975          401 FGP-EWAMQHITPQVLEMINNPH------YLYRMTILRAISLLAPVMGSE---ITCSRLLPVVINASKDR-VPNIKFNVA  469 (521)
Q Consensus       401 ~~~-~~~~~~l~~~l~~~l~~~~------~~~r~~a~~~l~~l~~~~~~~---~~~~~il~~l~~~l~d~-~~~VR~~a~  469 (521)
                      -.. ..+....+|.|.+++.+++      ..+...++.+++.+...-...   ......++.+..++.++ +..++..|+
T Consensus       362 ~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~  441 (457)
T 1xm9_A          362 PLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAAR  441 (457)
T ss_dssp             GGGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHH
Confidence            321 2234568899999887754      356778888888887533221   12346789999999998 899999999


Q ss_pred             HHHHHHHh
Q 009975          470 KVLQSLIP  477 (521)
Q Consensus       470 ~~l~~~~~  477 (521)
                      .+|..+..
T Consensus       442 ~~L~~~~~  449 (457)
T 1xm9_A          442 LLLSDMWS  449 (457)
T ss_dssp             HHHHTTSS
T ss_pred             HHHHHHHc
Confidence            99988765

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=99.56  E-value=8.3e-12  Score=122.22  Aligned_cols=213  Identities=15%  Similarity=0.123  Sum_probs=141.8

Q ss_pred             cHHHHHHHHHHHHccccccC--hHHHH--HhHHHHHHHhhc------CCChHHHHHHHHHHHHhhhhh------------
Q 009975          266 SQHVRSALASVIMGMAPLLG--KDATI--EQLLPIFLSLLK------DEFPDVRLNIISKLDQVNQVI------------  323 (521)
Q Consensus       266 ~~~vr~~~~~~l~~i~~~~~--~~~~~--~~l~~~l~~~l~------d~~~~vr~~a~~~l~~~~~~~------------  323 (521)
                      +..|+..++.++.+++..-.  .....  .-+++.++.+++      +.+......|+.+|..++...            
T Consensus       205 d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~  284 (584)
T 3l6x_A          205 WESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQE  284 (584)
T ss_dssp             CHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC---
T ss_pred             cHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhh
Confidence            45677777777777764321  11111  123444444443      244556666666665543221            


Q ss_pred             ---------------chhhH-hhhHHHHHHHHhc-CCChHHHHHHHHHhHHHHhhhChh------h-hHHHHHHHHHHHc
Q 009975          324 ---------------GIDLL-SQSLLPAIVELAE-DRHWRVRLAIIEYIPLLASQLGVG------F-FDDKLGALCMQWL  379 (521)
Q Consensus       324 ---------------~~~~~-~~~~~~~l~~~~~-~~~~~vr~~~~~~l~~l~~~~~~~------~-~~~~l~~~l~~~l  379 (521)
                                     |.+.+ ....++.+..++. ..++.+++.++.+|..++..-+..      . .....+|.+..++
T Consensus       285 ~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL  364 (584)
T 3l6x_A          285 AAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLL  364 (584)
T ss_dssp             -----------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGG
T ss_pred             hcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHH
Confidence                           11111 2345677777774 467899999999999887532211      1 1245699999999


Q ss_pred             CCCcHHHHHHHHHHHHHHHHHhCH-HHHHhhhHHHHHhhhcCc--------chHHHHHHHHHHHHhhcc---cChHHHhh
Q 009975          380 QDKVYSIRDAAANNLKRLAEEFGP-EWAMQHITPQVLEMINNP--------HYLYRMTILRAISLLAPV---MGSEITCS  447 (521)
Q Consensus       380 ~d~~~~vr~~a~~~l~~l~~~~~~-~~~~~~l~~~l~~~l~~~--------~~~~r~~a~~~l~~l~~~---~~~~~~~~  447 (521)
                      ..++..++..|+.+|..++..-.. ..+....+|.|..++.++        +..++..++.+++.+...   ........
T Consensus       365 ~s~~~~v~~~A~~aL~nLs~~~~~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~  444 (584)
T 3l6x_A          365 TNEHERVVKAASGALRNLAVDARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRET  444 (584)
T ss_dssp             GCSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred             cCCCHHHHHHHHHHHHHHhCChhHHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHC
Confidence            999999999999999999865432 234567899999988765        356788899999888642   11122346


Q ss_pred             cHHHHHHhhcCCC--CchHHHHHHHHHHHHHhh
Q 009975          448 RLLPVVINASKDR--VPNIKFNVAKVLQSLIPI  478 (521)
Q Consensus       448 ~il~~l~~~l~d~--~~~VR~~a~~~l~~~~~~  478 (521)
                      ..+|.+..++.+.  .+.++..|+.+|..+..+
T Consensus       445 g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~  477 (584)
T 3l6x_A          445 QGIEKLVLINKSGNRSEKEVRAAALVLQTIWGY  477 (584)
T ss_dssp             THHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTS
T ss_pred             CChHHHHHHHhCCCCChHHHHHHHHHHHHHHcC
Confidence            7899999999886  889999999999998743

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=99.55  E-value=6.5e-11  Score=125.04  Aligned_cols=490  Identities=9%  Similarity=0.042  Sum_probs=297.8

Q ss_pred             HHhhhhHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHHHhHHHHHHHhhcCCCCcchhhhhhhhhh----hcCCCChH
Q 009975           18 AHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHI----AYPSAPDI   93 (521)
Q Consensus        18 ~~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~p~i~~~~~~~~~~~r~~~~~~~~~----~~~~~~~~   93 (521)
                      +..+-..+..+.+.+++ .|+.|.+.|..+-+.  + +.+..+...+.   .+.+..+|..+...+..    -+..++++
T Consensus        15 v~~Le~av~~ly~p~~~-~r~~A~~~L~~~q~s--p-~aw~~~~~iL~---~s~~~~vR~faa~~Lk~~I~~~W~~L~~e   87 (1023)
T 4hat_C           15 IALLDQVVSTFYQGSGV-QQKQAQEILTKFQDN--P-DAWQKADQILQ---FSTNPQSKFIALSILDKLITRKWKLLPND   87 (1023)
T ss_dssp             HHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHC--T-TGGGGHHHHHH---HCCCHHHHHHHHHHHHHHHHHHGGGSCHH
T ss_pred             HHHHHHHHHHHhCCChH-HHHHHHHHHHHHHcC--c-cHHHHHHHHhc---CCCCHHHHHHHHHHHHHHHHhhhhcCCHH
Confidence            44555556665555444 899999988876664  2 22444444442   23455788777665543    33456665


Q ss_pred             ----HHHHHHHHHHHhcCCC-----ChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHh
Q 009975           94 ----LKTELRSIYTQLCQDD-----MPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALG  164 (521)
Q Consensus        94 ----~~~~l~~~l~~l~~~~-----~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~  164 (521)
                          .++.++..+.+...++     .+.+|...+.++..++...-+ ..|+.+++.+..+++. ++........++..+.
T Consensus        88 ~~~~Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p-~~Wp~~l~dL~~~l~~-~~~~~~~~L~iL~~L~  165 (1023)
T 4hat_C           88 HRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWP-QNWPEFIPELIGSSSS-SVNVCENNMIVLKLLS  165 (1023)
T ss_dssp             HHHHHHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTT-TTCTTHHHHHHHHTTT-CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhCh-hhchHHHHHHHHHhcC-CHHHHHHHHHHHHHHH
Confidence                4455555555544333     467888899999999887543 3588888888887764 3445667777777776


Q ss_pred             hhcCh---h---------------hhhhhhHHHHHHhcC-CCChHHHHHHHHHHHHHHHHhCCCc-cccchHHHHH-Hhc
Q 009975          165 KLLEP---Q---------------DCVAHILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGPEP-TRMDLVPAYV-RLL  223 (521)
Q Consensus       165 ~~~~~---~---------------~~~~~l~~~l~~~~~-d~~~~vR~~~~~~l~~i~~~~~~~~-~~~~l~~~l~-~~l  223 (521)
                      +.+.+   +               ...+.+++++...++ ..++.+...+.++++.+...++.+. ....+++.+. .++
T Consensus       166 EEV~~~~~~~l~~~r~~~lk~~l~~~~~~I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~WI~i~~i~~~~ll~~l~~~~L  245 (1023)
T 4hat_C          166 EEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGASSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFM  245 (1023)
T ss_dssp             HHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHH
T ss_pred             HHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCCHHHhcchhHHHHHHHHHc
Confidence            65311   1               111234455544443 3566788888888888776544322 2356888888 887


Q ss_pred             CCChHHHHHHHHHhHHHHHhh-h-CHH-HHH-------HhhhHHH-HHh-------------ccCCcHHHHHHHHHHHHc
Q 009975          224 RDNEAEVRIAAAGKVTKFCRI-L-NPE-LAI-------QHILPCV-KEL-------------SSDSSQHVRSALASVIMG  279 (521)
Q Consensus       224 ~d~~~~vr~~a~~~l~~l~~~-~-~~~-~~~-------~~~~~~l-~~~-------------~~d~~~~vr~~~~~~l~~  279 (521)
                      .+  +..|.+|+++|..+... . ++. .+.       +.+++.+ ..+             ..+.+.......+..+..
T Consensus       246 ~~--~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~  323 (1023)
T 4hat_C          246 TS--PDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTT  323 (1023)
T ss_dssp             HS--HHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHH
T ss_pred             CC--HHHHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHH
Confidence            65  57999999999999873 2 220 111       1222222 111             122334444444444443


Q ss_pred             ccccc----Ch----HHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchh-----hH---hhhHHHHHHHHh---
Q 009975          280 MAPLL----GK----DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID-----LL---SQSLLPAIVELA---  340 (521)
Q Consensus       280 i~~~~----~~----~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~-----~~---~~~~~~~l~~~~---  340 (521)
                      ++...    ..    .......+..++.+...++.++-..++..+..+...+-.+     .+   ...+++.+.+-+   
T Consensus       324 ~~e~~~~li~~~~~~~~~l~~~l~~Ll~~~~~~d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P  403 (1023)
T 4hat_C          324 YLARNRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRP  403 (1023)
T ss_dssp             HHHHHGGGGTSCGGGHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCC
T ss_pred             HHHHHHHHHhCCcchhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            33221    11    1112223446666667778888888888877776533211     11   123333333211   


Q ss_pred             c------C--CCh----------HHHH-HHHHHhHHHHhhhChhhhHHHHHHHHHHHcCC--CcHHHHHHHHHHHHHHHH
Q 009975          341 E------D--RHW----------RVRL-AIIEYIPLLASQLGVGFFDDKLGALCMQWLQD--KVYSIRDAAANNLKRLAE  399 (521)
Q Consensus       341 ~------~--~~~----------~vr~-~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d--~~~~vr~~a~~~l~~l~~  399 (521)
                      .      +  ..|          .... ..=+.|..+....+. ...+.+.+.+.+.+.+  .+|..|++++.++|.+..
T Consensus       404 ~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~L~~l~~l~~~-~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~  482 (1023)
T 4hat_C          404 EEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVI-DTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISG  482 (1023)
T ss_dssp             TTCCEEECTTSCEEECSSCCGGGHHHHHHHHHHHHHHHHHCHH-HHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTT
T ss_pred             cccccCCCCCccHHHHhccchHHHHHHHHHHHHHHHHhccCHH-HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHc
Confidence            1      1  122          0111 011444444443333 4455666777666654  689999999999999987


Q ss_pred             HhCHH---HHHhhhHHHHHhhhc-----CcchHHHHHHHHHHHHhhcccCh-HHHhhcHHHHHHhhcCCCCchHHHHHHH
Q 009975          400 EFGPE---WAMQHITPQVLEMIN-----NPHYLYRMTILRAISLLAPVMGS-EITCSRLLPVVINASKDRVPNIKFNVAK  470 (521)
Q Consensus       400 ~~~~~---~~~~~l~~~l~~~l~-----~~~~~~r~~a~~~l~~l~~~~~~-~~~~~~il~~l~~~l~d~~~~VR~~a~~  470 (521)
                      ....+   .+...++|.|..+..     |++..+|.++++++|...+.+.. ..+.+.+++.++..+.|+++.|..+|+.
T Consensus       483 ~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~~vl~~L~~~l~~~~~~v~~~A~~  562 (1023)
T 4hat_C          483 TMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACD  562 (1023)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred             CCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence            76543   344567777777665     46678899999999998875432 3357788889999999999999999999


Q ss_pred             HHHHHHhhhchHH----------HHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHHhhc
Q 009975          471 VLQSLIPIVDQSM----------VEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMM  519 (521)
Q Consensus       471 ~l~~~~~~~~~~~----------~~~~~~~~l~~l~~D~~~~vr~~a~~al~~l~~~~~  519 (521)
                      ++..+++..+...          +.+.++..+.....+-+.+-+..+.+|++.+.+-++
T Consensus       563 al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~  621 (1023)
T 4hat_C          563 TFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEER  621 (1023)
T ss_dssp             HHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCC
Confidence            9999998765433          334555555555566677777888888887776554

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.55  E-value=8.4e-13  Score=118.14  Aligned_cols=229  Identities=13%  Similarity=0.081  Sum_probs=134.2

Q ss_pred             HHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHH---HHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccChHHHHHh
Q 009975          216 VPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE---LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQ  292 (521)
Q Consensus       216 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~  292 (521)
                      +|.+.++++++++++|..|+.+|..++...+..   ......++.+.+++.++++.+|..++.+++.++..-...     
T Consensus         4 i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~-----   78 (252)
T 4hxt_A            4 VEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEA-----   78 (252)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH-----
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHH-----
Confidence            566666666666666666666666665533211   011124455555555555555555555555554321100     


Q ss_pred             HHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhCh---hhhHH
Q 009975          293 LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---GFFDD  369 (521)
Q Consensus       293 l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~---~~~~~  369 (521)
                                                     .........+|.+.+++.++++.+|..++.++..++.....   .....
T Consensus        79 -------------------------------~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~  127 (252)
T 4hxt_A           79 -------------------------------IKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDA  127 (252)
T ss_dssp             -------------------------------HHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred             -------------------------------HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHC
Confidence                                           00011123444444444444455555555444444421110   11122


Q ss_pred             HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhC---HHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccCh---H
Q 009975          370 KLGALCMQWLQDKVYSIRDAAANNLKRLAEEFG---PEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS---E  443 (521)
Q Consensus       370 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~---~  443 (521)
                      ..+|.+..+++++++.+|..++.+++.++....   ........+|.+..++.++++.+|..++.+++.++.....   .
T Consensus       128 ~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~  207 (252)
T 4hxt_A          128 GGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKA  207 (252)
T ss_dssp             THHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHH
T ss_pred             CCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            356777777888888888888888887764221   1122356788888888888899999999999998862211   1


Q ss_pred             HHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhc
Q 009975          444 ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD  480 (521)
Q Consensus       444 ~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~  480 (521)
                      ......++.+..++.++++.+|..|+.+|+.+....+
T Consensus       208 l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~  244 (252)
T 4hxt_A          208 IVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGGW  244 (252)
T ss_dssp             HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTCB
T ss_pred             HHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCCC
Confidence            1235678899999999999999999999999887543

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=99.55  E-value=3.4e-13  Score=119.01  Aligned_cols=188  Identities=12%  Similarity=0.174  Sum_probs=156.7

Q ss_pred             HHHHHHHHhcCCChHHHHHHHHHhHH-HHhhhCh-----hhhHHHHHHHHHHHc-CCCcHHHHHHHHHHHHHHHHHhC-H
Q 009975          332 LLPAIVELAEDRHWRVRLAIIEYIPL-LASQLGV-----GFFDDKLGALCMQWL-QDKVYSIRDAAANNLKRLAEEFG-P  403 (521)
Q Consensus       332 ~~~~l~~~~~~~~~~vr~~~~~~l~~-l~~~~~~-----~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~-~  403 (521)
                      +-+.+.+.+++++|.-|.+++..+.. +.+..+.     ..+ ..++..+...+ +|.+..||..|+.+++.++..++ .
T Consensus        17 l~~~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~-~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~   95 (249)
T 2qk1_A           17 LPKDFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNY-SNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTP   95 (249)
T ss_dssp             SCTTHHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCC-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTT
T ss_pred             CChhHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccH-HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccc
Confidence            33345666789999999999999998 8754322     122 45688888888 89999999999999999999887 4


Q ss_pred             H---HHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChHH---HhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHh
Q 009975          404 E---WAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI---TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIP  477 (521)
Q Consensus       404 ~---~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~---~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~  477 (521)
                      .   .+...++|.+.+.++|+...+|.++..++..++...++..   +.+.+++.++..++++++.+|..++.+++.++.
T Consensus        96 ~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~  175 (249)
T 2qk1_A           96 GFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMK  175 (249)
T ss_dssp             TSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Confidence            3   3456789999999999999999999999999998764321   245789999999999999999999999999998


Q ss_pred             hhch--H---HHH-hhHHHHHHHhcCCCCccHHHHHHHHHHHHHHhhcc
Q 009975          478 IVDQ--S---MVE-KTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMMS  520 (521)
Q Consensus       478 ~~~~--~---~~~-~~~~~~l~~l~~D~~~~vr~~a~~al~~l~~~~~~  520 (521)
                      ..+.  .   .+. +.+.|.+.++++|++++||..|..+++.+...+|.
T Consensus       176 ~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~  224 (249)
T 2qk1_A          176 EEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGM  224 (249)
T ss_dssp             HCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCS
T ss_pred             HcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCH
Confidence            7663  2   345 78999999999999999999999999999998874

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.52  E-value=1.2e-12  Score=117.11  Aligned_cols=225  Identities=14%  Similarity=0.101  Sum_probs=152.2

Q ss_pred             cchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHH---HHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccCh---
Q 009975          213 MDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE---LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK---  286 (521)
Q Consensus       213 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~---  286 (521)
                      ..-++.+.+.++++++++|..|+.+|..+...-.+.   ......+|.+.+++.++++.+|..++.+++.++.....   
T Consensus        11 ~~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~   90 (252)
T 4db8_A           11 GSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ   90 (252)
T ss_dssp             TCSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             cchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence            445788888888888899999999987655542111   12234778888889888899999999999988753221   


Q ss_pred             HHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchh---hHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhC
Q 009975          287 DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID---LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG  363 (521)
Q Consensus       287 ~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~  363 (521)
                      .......+|.+..+++++++.+|..++.++..+...-...   ......+|.+.+++.++++.+|..++.++..++....
T Consensus        91 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~  170 (252)
T 4db8_A           91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN  170 (252)
T ss_dssp             HHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH
T ss_pred             HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCh
Confidence            1122357899999999999999999999999887543321   2234678888888888888888888888887775322


Q ss_pred             hh---hhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCH---HHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhh
Q 009975          364 VG---FFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP---EWAMQHITPQVLEMINNPHYLYRMTILRAISLLA  437 (521)
Q Consensus       364 ~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~  437 (521)
                      ..   ......+|.+..++.++++.+|..|+.+|+.++.....   .......++.+..++.+++..+|..|+.+++.++
T Consensus       171 ~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~  250 (252)
T 4db8_A          171 EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ  250 (252)
T ss_dssp             HHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC
T ss_pred             HHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHh
Confidence            11   11234567777777777777777777777777531100   1112335556666666666666666666665554

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=99.51  E-value=2.3e-09  Score=108.96  Aligned_cols=290  Identities=12%  Similarity=0.057  Sum_probs=197.5

Q ss_pred             HHHHHHHHHHHHHHHhCCCccccchHHHHHHhcC---CChHHHHHHHHHhHHHHHhhhCHHHHHHhhhHHHHHhccCC--
Q 009975          191 VRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLR---DNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDS--  265 (521)
Q Consensus       191 vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~---d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~--  265 (521)
                      .|..++..+|-|-.  +   ....-+..+...+.   .+++.+|..|+.+++.+....+.+ .    +..+...+.+.  
T Consensus       374 ~k~sA~aSLGlIh~--g---~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~-~----~~lL~~~L~~~~~  443 (963)
T 4ady_A          374 AKFTATASLGVIHK--G---NLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRD-T----TDYLKNIIVENSG  443 (963)
T ss_dssp             HHHHHHHHHHHHTS--S---CTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHH-H----HHHHHHHHHHHSS
T ss_pred             HHHHHHHHhhhhcc--C---chHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHH-H----HHHHHHHHcCccc
Confidence            45666666765432  1   11345777777776   567899999999999988876653 2    33333333333  


Q ss_pred             ------cHHHHHHHHHHHHccccccChHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHH
Q 009975          266 ------SQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVEL  339 (521)
Q Consensus       266 ------~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~  339 (521)
                            +..+|..++-.+|.+.-..+++    ++.+.+...+.|++..+|..|+.+++.+.-..|.....+.++..+   
T Consensus       444 ~~~~~~~~~ir~gAaLGLGla~~GS~~e----ev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~---  516 (963)
T 4ady_A          444 TSGDEDVDVLLHGASLGIGLAAMGSANI----EVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYS---  516 (963)
T ss_dssp             CCSCHHHHHHHHHHHHHHHHHSTTCCCH----HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH---
T ss_pred             cccccccHHHHHHHHHHHHHHhcCCCCH----HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHH---
Confidence                  3789999999999876544443    455666667777778888899999998754444333323333333   


Q ss_pred             hcCCChHHHHHHHHHhHHHHhhhChhhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhc
Q 009975          340 AEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMIN  419 (521)
Q Consensus       340 ~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~  419 (521)
                      .++.+..+|..++..|+.+  .+|.+...+.++.   .+..+.++-+|.+++.+++.-+...|.....+.++..   +.+
T Consensus       517 ~e~~~e~vrR~aalgLGll--~~g~~e~~~~li~---~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~---~~~  588 (963)
T 4ady_A          517 QETQHGNITRGLAVGLALI--NYGRQELADDLIT---KMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHV---AVS  588 (963)
T ss_dssp             HHCSCHHHHHHHHHHHHHH--TTTCGGGGHHHHH---HHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHH---HHH
T ss_pred             hccCcHHHHHHHHHHHHhh--hCCChHHHHHHHH---HHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH---hcc
Confidence            3566778898888888776  3444433333333   3345789999999999988776666654333333332   346


Q ss_pred             CcchHHHHHHHHHHHHhhcccChHHHhhcHHHHHHh-hcCCCCchHHHHHHHHHHHHHhhhchHHHHhhHHHHHHHhcCC
Q 009975          420 NPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVIN-ASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTED  498 (521)
Q Consensus       420 ~~~~~~r~~a~~~l~~l~~~~~~~~~~~~il~~l~~-~l~d~~~~VR~~a~~~l~~~~~~~~~~~~~~~~~~~l~~l~~D  498 (521)
                      |++..+|..|+.+++.+..  |.+    ...+.++. +.++.++.||..++.+++.+...-+.    ..++..|.++.+|
T Consensus       589 d~~d~VRraAViaLGlI~~--g~~----e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~----~~aid~L~~L~~D  658 (963)
T 4ady_A          589 DSNDDVRRAAVIALGFVLL--RDY----TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL----QSAIDVLDPLTKD  658 (963)
T ss_dssp             CSCHHHHHHHHHHHHHHTS--SSC----SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC----HHHHHHHHHHHTC
T ss_pred             CCcHHHHHHHHHHHHhhcc--CCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc----HHHHHHHHHHccC
Confidence            7788899999999998864  222    23444554 55678999999999999998754332    4566788888999


Q ss_pred             CCccHHHHHHHHHHHHH
Q 009975          499 PDVDVRFFATQAIQSID  515 (521)
Q Consensus       499 ~~~~vr~~a~~al~~l~  515 (521)
                      +|..||..|..|++.+.
T Consensus       659 ~d~~Vrq~Ai~ALG~Ig  675 (963)
T 4ady_A          659 PVDFVRQAAMIALSMIL  675 (963)
T ss_dssp             SSHHHHHHHHHHHHHHS
T ss_pred             CCHHHHHHHHHHHHHHh
Confidence            99999999999998765

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=99.49  E-value=3e-11  Score=122.63  Aligned_cols=309  Identities=14%  Similarity=0.060  Sum_probs=211.4

Q ss_pred             hHHHHHHhcC---CCChHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCh--------HHHHHHHHHhHHHHHhh
Q 009975          176 ILPVIVNFSQ---DKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNE--------AEVRIAAAGKVTKFCRI  244 (521)
Q Consensus       176 l~~~l~~~~~---d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~--------~~vr~~a~~~l~~l~~~  244 (521)
                      .+..+...+.   +.++.+|..++.++|-+....+     .+.+..+...+.+++        +.+|.+|+-.|+.+.--
T Consensus       393 gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~-----~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~G  467 (963)
T 4ady_A          393 GKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFG-----RDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMG  467 (963)
T ss_dssp             HHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTT-----HHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCc-----HHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcC
Confidence            4555555554   5678999999999997654322     135566666665443        67999999999886544


Q ss_pred             hCHHHHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccChHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhc
Q 009975          245 LNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG  324 (521)
Q Consensus       245 ~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~  324 (521)
                      .+.+.    +.+.+...+.|.+..+|..++.++|.+.-.-|.....+.++..+.   .+.+..+|+.++.+|+.+.  +|
T Consensus       468 S~~ee----v~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~---e~~~e~vrR~aalgLGll~--~g  538 (963)
T 4ady_A          468 SANIE----VYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQ---ETQHGNITRGLAVGLALIN--YG  538 (963)
T ss_dssp             CCCHH----HHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH---HCSCHHHHHHHHHHHHHHT--TT
T ss_pred             CCCHH----HHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHh---ccCcHHHHHHHHHHHHhhh--CC
Confidence            44444    345555555666677888899899887544455444455555443   5778899999999999774  23


Q ss_pred             hhhHhhhHHHHH-HHHhcCCChHHHHHHHHHhHHHHhhhChhhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCH
Q 009975          325 IDLLSQSLLPAI-VELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP  403 (521)
Q Consensus       325 ~~~~~~~~~~~l-~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~  403 (521)
                      .+    ...+.+ ..+..+.+|.+|..++.+++.-....|.....+   .++..+.+|.+..||++|+.+|+.+.-  |.
T Consensus       539 ~~----e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq---~LL~~~~~d~~d~VRraAViaLGlI~~--g~  609 (963)
T 4ady_A          539 RQ----ELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVK---RLLHVAVSDSNDDVRRAAVIALGFVLL--RD  609 (963)
T ss_dssp             CG----GGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHH---HHHHHHHHCSCHHHHHHHHHHHHHHTS--SS
T ss_pred             Ch----HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHH---HHHHHhccCCcHHHHHHHHHHHHhhcc--CC
Confidence            22    223333 334567899999999888876665666643333   344445578899999999999987642  32


Q ss_pred             HHHHhhhHHHHHh-hhcCcchHHHHHHHHHHHHhhcccChHHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchH
Q 009975          404 EWAMQHITPQVLE-MINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS  482 (521)
Q Consensus       404 ~~~~~~l~~~l~~-~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~  482 (521)
                          ...++.+.. +..+.++.+|..++.++|.+...-+    ...++..|..+..|++..||++|+.+|+.+.....+.
T Consensus       610 ----~e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~----~~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna  681 (963)
T 4ady_A          610 ----YTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKG----LQSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEK  681 (963)
T ss_dssp             ----CSSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSC----CHHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTT
T ss_pred             ----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCC----cHHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCccc
Confidence                235666666 4567899999999999999975333    2457778888899999999999999999998643322


Q ss_pred             H--HHhhHHHHHHHhcCC--CCccHHHHHHHHHHHHH
Q 009975          483 M--VEKTIRPCLVELTED--PDVDVRFFATQAIQSID  515 (521)
Q Consensus       483 ~--~~~~~~~~l~~l~~D--~~~~vr~~a~~al~~l~  515 (521)
                      .  -...++..|.+...|  .|.++|+.+.-|.+-+.
T Consensus       682 ~~~rva~~l~~L~~~~~dk~~d~~~~fga~iAqGll~  718 (963)
T 4ady_A          682 LNPQVADINKNFLSVITNKHQEGLAKFGACVAQGIMN  718 (963)
T ss_dssp             TCTTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHT
T ss_pred             cchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHh
Confidence            0  123344444444444  67889999999888663

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.47  E-value=1.1e-10  Score=116.21  Aligned_cols=400  Identities=12%  Similarity=0.088  Sum_probs=248.5

Q ss_pred             CchhHHHHHHHHHHHHHHhhcC-hhHHHHhHHHHHHHhhcCCCCcchhhhhhhhhhhcC--CCChHHHHHHHHHHHHhcC
Q 009975           31 VEETCVRDKAVESLCRIGSQMR-ESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYP--SAPDILKTELRSIYTQLCQ  107 (521)
Q Consensus        31 ~~~~~vR~~a~~~l~~i~~~~~-~~~~~~~l~p~i~~~~~~~~~~~r~~~~~~~~~~~~--~~~~~~~~~l~~~l~~l~~  107 (521)
                      .++..+..++++.+...|..=. .+.+.+..+|++.+..+++  .+|..+...+..++.  ...+.....+.+.+.+.+.
T Consensus       267 ~~~~~~~~a~L~lLsaACi~~~cR~~I~~~~~~~L~~~l~~~--~ir~lAavvL~KL~~~~~~~~~si~~La~~~~~~L~  344 (778)
T 3opb_A          267 EQDLQFTKELLRLLSSACIDETMRTYITENYLQLLERSLNVE--DVQIYSALVLVKTWSFTKLTCINLKQLSEIFINAIS  344 (778)
T ss_dssp             SCCHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHTTSG--GGHHHHHHHHHHHTGGGTCTTCCHHHHHHHHHHHTT
T ss_pred             ccchHHHHHHHHHHHHHhCCcHHHHHHHHhHHHHHHHHhccH--HHHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHh
Confidence            3445555666666665554321 2344567778888877653  456555544444332  2222345678888888887


Q ss_pred             CCChHHHHHHHHhHHHHHHhhCc-hh--hHHHHHHHHHHhhcC-CChhHHHHHHHHHHHHhhhcChhh----hhhhhHHH
Q 009975          108 DDMPMVRRSAASNLGKFAATVEP-AH--LKTDIMSIFEDLTQD-DQDSVRLLAVEGCAALGKLLEPQD----CVAHILPV  179 (521)
Q Consensus       108 ~~~~~vr~~a~~~l~~l~~~~~~-~~--~~~~l~~~l~~l~~d-~~~~vr~~a~~~l~~l~~~~~~~~----~~~~l~~~  179 (521)
                      +++...|+.|++.|..+...-.- +.  ..+.+++.+.+++.+ ++..+-..+..++.++....+...    ...++.++
T Consensus       345 ~~~~~~~~~AvEgLaYLSl~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~  424 (778)
T 3opb_A          345 RRIVPKVEMSVEALAYLSLKASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXX  424 (778)
T ss_dssp             TCCHHHHHHHHHHHHHHTTSSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC--------
T ss_pred             cCCccHHHHHHHHHHHHhCCHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhh
Confidence            76666699999999988632110 11  224557777777774 566788889999999988754321    11222222


Q ss_pred             HHHhc----CCCChHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHH--HHHHh
Q 009975          180 IVNFS----QDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE--LAIQH  253 (521)
Q Consensus       180 l~~~~----~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~  253 (521)
                      ...-.    .++++.-..   ..+..+.+   .......++|.+..+++.+++.+|..|+.+|..++..-...  ...+-
T Consensus       425 A~~~~p~~~~~d~~~~~~---~~v~~~~~---~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqG  498 (778)
T 3opb_A          425 XXXXXPAADKVGAEKAAK---EDILLFNE---KYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQG  498 (778)
T ss_dssp             ----------CCTHHHHH---HHHHHHHH---HHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTT
T ss_pred             ccccCcccCcccccccch---HHHHHHHH---HHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCC
Confidence            21110    001111111   11111111   11223568999999999999999999999999998753222  22344


Q ss_pred             hhHHHHHhccCCcHH---HHHHHHHHHHccccccChHHHH-----HhHHHHHHHhhcC-CCh-------------HHHHH
Q 009975          254 ILPCVKELSSDSSQH---VRSALASVIMGMAPLLGKDATI-----EQLLPIFLSLLKD-EFP-------------DVRLN  311 (521)
Q Consensus       254 ~~~~l~~~~~d~~~~---vr~~~~~~l~~i~~~~~~~~~~-----~~l~~~l~~~l~d-~~~-------------~vr~~  311 (521)
                      .++.+..++.+.+..   +|..|+.++.++.....+....     -..+|.+..++.. +..             --+..
T Consensus       499 al~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~fe  578 (778)
T 3opb_A          499 AVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYE  578 (778)
T ss_dssp             HHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHH
T ss_pred             CHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHH
Confidence            677788777666544   8999999999887443322211     2578899999882 221             12668


Q ss_pred             HHHHHHHhhhhhc-------hhhHh-hhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhCh---hhhH---HH---HHHH
Q 009975          312 IISKLDQVNQVIG-------IDLLS-QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---GFFD---DK---LGAL  374 (521)
Q Consensus       312 a~~~l~~~~~~~~-------~~~~~-~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~---~~~~---~~---l~~~  374 (521)
                      |+.+|..++..-+       ...+. ...+|.+.+++.+.+..+|.++++++..++..-..   +.+.   +.   =++.
T Consensus       579 AL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~l  658 (778)
T 3opb_A          579 ALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNI  658 (778)
T ss_dssp             HHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHH
T ss_pred             HHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHH
Confidence            8888888877532       11222 25789999999989999999999999998864321   2221   11   2678


Q ss_pred             HHHHcCCCcHHHHHHHHHHHHHHHHHhCH--HHH-H-hhhHHHHHhhhcC--cchHHHHHHHHHHHHhhc
Q 009975          375 CMQWLQDKVYSIRDAAANNLKRLAEEFGP--EWA-M-QHITPQVLEMINN--PHYLYRMTILRAISLLAP  438 (521)
Q Consensus       375 l~~~l~d~~~~vr~~a~~~l~~l~~~~~~--~~~-~-~~l~~~l~~~l~~--~~~~~r~~a~~~l~~l~~  438 (521)
                      +..++...+.++|.+|..+++.+......  ..+ . ...++.+..++.+  ++..+|..++.++..++.
T Consensus       659 LV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~  728 (778)
T 3opb_A          659 LVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFE  728 (778)
T ss_dssp             HHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence            88889999999999999998887543221  111 1 2466677777777  788899999999888886

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=99.47  E-value=1.2e-11  Score=118.31  Aligned_cols=245  Identities=12%  Similarity=0.009  Sum_probs=175.5

Q ss_pred             HHHHHHHccccccC-hHH-HHHhHHHHHHHhhc-----------CCChHHHHHHHHHHHHhhhhhc--hhhH--hhhHHH
Q 009975          272 ALASVIMGMAPLLG-KDA-TIEQLLPIFLSLLK-----------DEFPDVRLNIISKLDQVNQVIG--IDLL--SQSLLP  334 (521)
Q Consensus       272 ~~~~~l~~i~~~~~-~~~-~~~~l~~~l~~~l~-----------d~~~~vr~~a~~~l~~~~~~~~--~~~~--~~~~~~  334 (521)
                      .+++++++++..-. ++. .....++.+..++.           +.++.++..|+.+|..++..-.  +..+  ....+|
T Consensus       167 qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp  246 (458)
T 3nmz_A          167 PAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMR  246 (458)
T ss_dssp             HHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHH
T ss_pred             HHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHH
Confidence            78888888864311 111 12346777777773           1346789999999999875432  1122  245699


Q ss_pred             HHHHHhcCCChHHHHHHHHHhHHHHhhhCh---hh-hHHHHHHHHHHH-cCCCcHHHHHHHHHHHHHHHHHh-C--HHHH
Q 009975          335 AIVELAEDRHWRVRLAIIEYIPLLASQLGV---GF-FDDKLGALCMQW-LQDKVYSIRDAAANNLKRLAEEF-G--PEWA  406 (521)
Q Consensus       335 ~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~---~~-~~~~l~~~l~~~-l~d~~~~vr~~a~~~l~~l~~~~-~--~~~~  406 (521)
                      .+.+++.+++..++..++.+|..++..-+.   .. .....+|.+..+ +...+..+++.++.++..+.... +  ....
T Consensus       247 ~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~  326 (458)
T 3nmz_A          247 ALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADIC  326 (458)
T ss_dssp             HHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHH
Confidence            999999999999999999999888753111   11 123467888886 56678899999999999887632 1  1222


Q ss_pred             -HhhhHHHHHhhhcCcch----HHHHHHHHHHHHhhcc--cChHH----HhhcHHHHHHhhcCCCCchHHHHHHHHHHHH
Q 009975          407 -MQHITPQVLEMINNPHY----LYRMTILRAISLLAPV--MGSEI----TCSRLLPVVINASKDRVPNIKFNVAKVLQSL  475 (521)
Q Consensus       407 -~~~l~~~l~~~l~~~~~----~~r~~a~~~l~~l~~~--~~~~~----~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~  475 (521)
                       ....+|.|..++.+++.    .++..++.++..++..  .+.+.    .....+|.++.++.+++..++..|+.+|..+
T Consensus       327 ~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nL  406 (458)
T 3nmz_A          327 AVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNL  406 (458)
T ss_dssp             HSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHH
T ss_pred             HhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence             35678999998876543    4888999999988752  12221    2345789999999999999999999999999


Q ss_pred             Hhhhch---HHHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 009975          476 IPIVDQ---SMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDH  516 (521)
Q Consensus       476 ~~~~~~---~~~~~~~~~~l~~l~~D~~~~vr~~a~~al~~l~~  516 (521)
                      +..-..   .....-.+|.|..++...+.++|..|++||..|..
T Consensus       407 a~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~  450 (458)
T 3nmz_A          407 SARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMA  450 (458)
T ss_dssp             HSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHT
T ss_pred             HcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHc
Confidence            842111   12335678999999999999999999999999875

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=99.46  E-value=9.5e-10  Score=116.24  Aligned_cols=449  Identities=8%  Similarity=0.007  Sum_probs=274.9

Q ss_pred             cCchhHHHHHHHHHHHHHHhh----cChh---HHHHhHHHHHHHhhcCC-----CCcchhhhhhhhhhhcCCCChHHHHH
Q 009975           30 TVEETCVRDKAVESLCRIGSQ----MRES---DLVDWYIPLVKRLAAGE-----WFTARVSACGLFHIAYPSAPDILKTE   97 (521)
Q Consensus        30 ~~~~~~vR~~a~~~l~~i~~~----~~~~---~~~~~l~p~i~~~~~~~-----~~~~r~~~~~~~~~~~~~~~~~~~~~   97 (521)
                      ++.++.+|..|...|...++.    ++++   .+++.++..+.+...++     ...++...+.++..++.+.=+..++.
T Consensus        59 ~s~~~~vR~faa~~Lk~~I~~~W~~L~~e~~~~Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p~~Wp~  138 (1023)
T 4hat_C           59 FSTNPQSKFIALSILDKLITRKWKLLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPE  138 (1023)
T ss_dssp             HCCCHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTT
T ss_pred             CCCCHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhChhhchH
Confidence            355789999999998877763    5554   46677787776655432     22334334444444443321223667


Q ss_pred             HHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCc---h---------------hhHHHHHHHHHHhhcC-CChhHHHHHHH
Q 009975           98 LRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP---A---------------HLKTDIMSIFEDLTQD-DQDSVRLLAVE  158 (521)
Q Consensus        98 l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~---~---------------~~~~~l~~~l~~l~~d-~~~~vr~~a~~  158 (521)
                      +++.+.++++. ++.....+...|..+.+.+..   +               ...+.+.+++...+.+ .+..+...+.+
T Consensus       139 ~l~dL~~~l~~-~~~~~~~~L~iL~~L~EEV~~~~~~~l~~~r~~~lk~~l~~~~~~I~~ll~~iL~~~~~~~l~~~~L~  217 (1023)
T 4hat_C          139 FIPELIGSSSS-SVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGASSSLIVATLE  217 (1023)
T ss_dssp             HHHHHHHHTTT-CHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred             HHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            77777777654 355566667777776665321   0               1124456666666543 45677888889


Q ss_pred             HHHHHhhhcChhh-hhhhhHHHHH-HhcCCCChHHHHHHHHHHHHHHHH-h-CCC-cccc-------chHHHH-HHh---
Q 009975          159 GCAALGKLLEPQD-CVAHILPVIV-NFSQDKSWRVRYMVANQLYELCEA-V-GPE-PTRM-------DLVPAY-VRL---  222 (521)
Q Consensus       159 ~l~~l~~~~~~~~-~~~~l~~~l~-~~~~d~~~~vR~~~~~~l~~i~~~-~-~~~-~~~~-------~l~~~l-~~~---  222 (521)
                      ++....+-++-+. ....+++.+. .++.  ++..|..+++++..++.. . ++. ...+       .+++.+ ..+   
T Consensus       218 ~l~s~l~WI~i~~i~~~~ll~~l~~~~L~--~~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~lf~~~l~~l~~~i~p~  295 (1023)
T 4hat_C          218 SLLRYLHWIPYRYIYETNILELLSTKFMT--SPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPV  295 (1023)
T ss_dssp             HHHHHTTTSCTHHHHSSSHHHHHHTHHHH--SHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHHHHHHHHHHHTCCT
T ss_pred             HHHHHHHhCCHHHhcchhHHHHHHHHHcC--CHHHHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            8888877665442 2345777777 6664  567999999999988752 1 111 1111       111211 110   


Q ss_pred             ----------cCCChHHHHHHHHHhHHHHHhhhC------H--HHHHHhhhHHHHHhccCCcHHHHHHHHHHHHcccccc
Q 009975          223 ----------LRDNEAEVRIAAAGKVTKFCRILN------P--ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLL  284 (521)
Q Consensus       223 ----------l~d~~~~vr~~a~~~l~~l~~~~~------~--~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~  284 (521)
                                ..+++.+....-...+..+++...      +  ..........+......+++.+-..+......+...+
T Consensus       296 ~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~~~l~~Ll~~~~~~d~ei~~~tl~FW~~L~~~l  375 (1023)
T 4hat_C          296 TADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADL  375 (1023)
T ss_dssp             TCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHH
Confidence                      123445555555555555555321      1  1122222335555556667766555555554444321


Q ss_pred             C-----h---HHHHHhHHHHHHHhhcCCC-------------------hH--HH-HHHHHHHHHhhhhhchhhHhhhHHH
Q 009975          285 G-----K---DATIEQLLPIFLSLLKDEF-------------------PD--VR-LNIISKLDQVNQVIGIDLLSQSLLP  334 (521)
Q Consensus       285 ~-----~---~~~~~~l~~~l~~~l~d~~-------------------~~--vr-~~a~~~l~~~~~~~~~~~~~~~~~~  334 (521)
                      -     .   ......+++.+...+.=++                   .+  .. +..-.+|..+....+. ...+.+++
T Consensus       376 ~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~L~~l~~l~~~-~~~~~~~~  454 (1023)
T 4hat_C          376 FYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVI-DTEEIMIS  454 (1023)
T ss_dssp             TTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHHHHHHHHHHHCHH-HHHHHHHH
T ss_pred             HhchHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHHHHHHHHhccCHH-HHHHHHHH
Confidence            1     1   1223456666665544221                   00  11 1111444444443443 33366777


Q ss_pred             HHHHHhcC--CChHHHHHHHHHhHHHHhhhChh---hhHHHHHHHHHHHcC-----CCcHHHHHHHHHHHHHHHHHhCHH
Q 009975          335 AIVELAED--RHWRVRLAIIEYIPLLASQLGVG---FFDDKLGALCMQWLQ-----DKVYSIRDAAANNLKRLAEEFGPE  404 (521)
Q Consensus       335 ~l~~~~~~--~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~-----d~~~~vr~~a~~~l~~l~~~~~~~  404 (521)
                      .+.+.+.+  .+|+.|.+++.+++.++..+.++   .+.+.++|.++.++.     |+...||..++.++|.+.+.+...
T Consensus       455 ~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~  534 (1023)
T 4hat_C          455 KLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAH  534 (1023)
T ss_dssp             HHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHC
T ss_pred             HHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhcc
Confidence            77665543  68999999999999999887654   455677888888776     566778889999999988766322


Q ss_pred             -HHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChHH----------HhhcHHHHHHhhcCCCCchHHHHHHHHHH
Q 009975          405 -WAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI----------TCSRLLPVVINASKDRVPNIKFNVAKVLQ  473 (521)
Q Consensus       405 -~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~----------~~~~il~~l~~~l~d~~~~VR~~a~~~l~  473 (521)
                       .+.+.++..+.+.+.++++++..+|+.++..+++.++...          +.+.++..+.....+-.+.-+..+.++++
T Consensus       535 ~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~  614 (1023)
T 4hat_C          535 WNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACG  614 (1023)
T ss_dssp             HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence             2456677788888888999999999999999998777543          44556666666666667778889999999


Q ss_pred             HHHhhhchH
Q 009975          474 SLIPIVDQS  482 (521)
Q Consensus       474 ~~~~~~~~~  482 (521)
                      .++...+..
T Consensus       615 ~vi~~~~~~  623 (1023)
T 4hat_C          615 IIISEERSV  623 (1023)
T ss_dssp             HHHTTCCSH
T ss_pred             HHHHhCCCH
Confidence            999987744

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=99.45  E-value=7.5e-11  Score=112.84  Aligned_cols=245  Identities=12%  Similarity=0.039  Sum_probs=174.1

Q ss_pred             HHHHhHHHHHhhhCH-HHH-HHhhhHHHHHhcc-----------CCcHHHHHHHHHHHHccccccCh--HHH--HHhHHH
Q 009975          233 AAAGKVTKFCRILNP-ELA-IQHILPCVKELSS-----------DSSQHVRSALASVIMGMAPLLGK--DAT--IEQLLP  295 (521)
Q Consensus       233 ~a~~~l~~l~~~~~~-~~~-~~~~~~~l~~~~~-----------d~~~~vr~~~~~~l~~i~~~~~~--~~~--~~~l~~  295 (521)
                      .|+.+|..++..-.. ..+ ..-.++.+..++.           +.+..++..+++++..++..-..  ..+  ....+|
T Consensus       167 qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp  246 (458)
T 3nmz_A          167 PAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMR  246 (458)
T ss_dssp             HHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHH
T ss_pred             HHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHH
Confidence            677778777543111 111 1224555555552           13567899999999998854321  122  134699


Q ss_pred             HHHHhhcCCChHHHHHHHHHHHHhhhhhc---hhh-HhhhHHHHHHHH-hcCCChHHHHHHHHHhHHHHhhhCh--hhh-
Q 009975          296 IFLSLLKDEFPDVRLNIISKLDQVNQVIG---IDL-LSQSLLPAIVEL-AEDRHWRVRLAIIEYIPLLASQLGV--GFF-  367 (521)
Q Consensus       296 ~l~~~l~d~~~~vr~~a~~~l~~~~~~~~---~~~-~~~~~~~~l~~~-~~~~~~~vr~~~~~~l~~l~~~~~~--~~~-  367 (521)
                      .+..++.+++++++..|+.+|..+...-+   ... .....+|.+.++ ..+.+..++..++.++..++.....  ..+ 
T Consensus       247 ~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~  326 (458)
T 3nmz_A          247 ALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADIC  326 (458)
T ss_dssp             HHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHH
Confidence            99999999999999999999999865311   112 224678888886 5667889999999999888874321  122 


Q ss_pred             -HHHHHHHHHHHcCCCcH----HHHHHHHHHHHHHHHH--hCHH----HHHhhhHHHHHhhhcCcchHHHHHHHHHHHHh
Q 009975          368 -DDKLGALCMQWLQDKVY----SIRDAAANNLKRLAEE--FGPE----WAMQHITPQVLEMINNPHYLYRMTILRAISLL  436 (521)
Q Consensus       368 -~~~l~~~l~~~l~d~~~----~vr~~a~~~l~~l~~~--~~~~----~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l  436 (521)
                       ....+|.+..++.+...    .++..|+.+|..+...  .+.+    ......+|.|..++.+++..++..|+.+++.+
T Consensus       327 ~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nL  406 (458)
T 3nmz_A          327 AVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNL  406 (458)
T ss_dssp             HSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHH
T ss_pred             HhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence             24578899999886544    5889899999888753  1222    12345789999999999999999999999999


Q ss_pred             hcccChH----HHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhh
Q 009975          437 APVMGSE----ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPI  478 (521)
Q Consensus       437 ~~~~~~~----~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~  478 (521)
                      +.. ..+    ......+|.+..++..+++.+|..|+.+|..+...
T Consensus       407 a~~-~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~  451 (458)
T 3nmz_A          407 SAR-NPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN  451 (458)
T ss_dssp             HSS-CHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTC
T ss_pred             HcC-CHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence            842 121    23356789999999999999999999999999875

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=99.43  E-value=1.9e-14  Score=124.83  Aligned_cols=185  Identities=20%  Similarity=0.269  Sum_probs=93.6

Q ss_pred             HhcCCCChHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhhhHHHHHh
Q 009975          182 NFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKEL  261 (521)
Q Consensus       182 ~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~  261 (521)
                      .++.|+++.||..++..+.               ...+..+++|+++.||..++..++       .        +.+..+
T Consensus        57 ~ll~d~~~~VR~~AA~~l~---------------~~~l~~L~~D~~~~VR~~aA~~L~-------~--------~~L~~l  106 (244)
T 1lrv_A           57 QYLADPFWERRAIAVRYSP---------------VEALTPLIRDSDEVVRRAVAYRLP-------R--------EQLSAL  106 (244)
T ss_dssp             GGTTCSSHHHHHHHHTTSC---------------GGGGGGGTTCSSHHHHHHHHTTSC-------S--------GGGGGT
T ss_pred             HHhcCCCHHHHHHHHHhCC---------------HHHHHHHccCcCHHHHHHHHHHCC-------H--------HHHHHH
Confidence            3456666666666665321               122455566666666666665421       1        234555


Q ss_pred             ccCCcHHHHHHHHHHHHccccccChHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHhc
Q 009975          262 SSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAE  341 (521)
Q Consensus       262 ~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~  341 (521)
                      ++|+++.||..++..+       +.        +.+..+++|+++.||..++..+       +.        +.+..+.+
T Consensus       107 l~D~d~~VR~~aA~~l-------~~--------~~L~~L~~D~d~~VR~~aA~~l-------~~--------~~l~~l~~  156 (244)
T 1lrv_A          107 MFDEDREVRITVADRL-------PL--------EQLEQMAADRDYLVRAYVVQRI-------PP--------GRLFRFMR  156 (244)
T ss_dssp             TTCSCHHHHHHHHHHS-------CT--------GGGGGGTTCSSHHHHHHHHHHS-------CG--------GGGGGTTT
T ss_pred             HcCCCHHHHHHHHHhC-------CH--------HHHHHHHcCCCHHHHHHHHHhc-------CH--------HHHHHHHc
Confidence            6666666666665532       10        1233445666666666665532       11        11223455


Q ss_pred             CCChHHHHHHHHHhHHHHhhhChhhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCc
Q 009975          342 DRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNP  421 (521)
Q Consensus       342 ~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~  421 (521)
                      |++|.||..++..+       +.        +.+..+++|+++.||.+++..+       +        .+.+..+++|+
T Consensus       157 D~d~~VR~~aa~~l-------~~--------~ll~~ll~D~d~~VR~aaa~~l-------~--------~~~L~~Ll~D~  206 (244)
T 1lrv_A          157 DEDRQVRKLVAKRL-------PE--------ESLGLMTQDPEPEVRRIVASRL-------R--------GDDLLELLHDP  206 (244)
T ss_dssp             CSCHHHHHHHHHHS-------CG--------GGGGGSTTCSSHHHHHHHHHHC-------C--------GGGGGGGGGCS
T ss_pred             CCCHHHHHHHHHcC-------CH--------HHHHHHHcCCCHHHHHHHHHhC-------C--------HHHHHHHHcCC
Confidence            66666666655531       11        1233455666666666655432       1        12344455666


Q ss_pred             chHHHHHHHHHHHHhhcccChHHHhhcHHHHHHhhcCCCCchHHHHHHHHH
Q 009975          422 HYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVL  472 (521)
Q Consensus       422 ~~~~r~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~VR~~a~~~l  472 (521)
                      +|.+|..++..++               .+.+..+ .|+++.||.++...|
T Consensus       207 d~~VR~~aa~~l~---------------~~~L~~L-~D~~~~VR~aa~~~L  241 (244)
T 1lrv_A          207 DWTVRLAAVEHAS---------------LEALREL-DEPDPEVRLAIAGRL  241 (244)
T ss_dssp             SHHHHHHHHHHSC---------------HHHHHHC-CCCCHHHHHHHHCCC
T ss_pred             CHHHHHHHHHcCC---------------HHHHHHc-cCCCHHHHHHHHHHh
Confidence            6666666665532               1333334 666666666655443

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=99.42  E-value=2.1e-14  Score=124.53  Aligned_cols=188  Identities=21%  Similarity=0.216  Sum_probs=127.1

Q ss_pred             HHHhcCCCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcChhhhhhhhHHHHH
Q 009975          102 YTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIV  181 (521)
Q Consensus       102 l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~  181 (521)
                      +..+++|+++.||..++..+       +        ...+..+.+|+++.||..+...+       +.        +.+.
T Consensus        55 ~~~ll~d~~~~VR~~AA~~l-------~--------~~~l~~L~~D~~~~VR~~aA~~L-------~~--------~~L~  104 (244)
T 1lrv_A           55 AVQYLADPFWERRAIAVRYS-------P--------VEALTPLIRDSDEVVRRAVAYRL-------PR--------EQLS  104 (244)
T ss_dssp             GGGGTTCSSHHHHHHHHTTS-------C--------GGGGGGGTTCSSHHHHHHHHTTS-------CS--------GGGG
T ss_pred             HHHHhcCCCHHHHHHHHHhC-------C--------HHHHHHHccCcCHHHHHHHHHHC-------CH--------HHHH
Confidence            34667888899998888754       1        12356778888888888887642       21        2456


Q ss_pred             HhcCCCChHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhhhHHHHHh
Q 009975          182 NFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKEL  261 (521)
Q Consensus       182 ~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~  261 (521)
                      .+++|+++.||..++..+       +     .   +.+..+++|+++.||..++..+       +        .+.+..+
T Consensus       105 ~ll~D~d~~VR~~aA~~l-------~-----~---~~L~~L~~D~d~~VR~~aA~~l-------~--------~~~l~~l  154 (244)
T 1lrv_A          105 ALMFDEDREVRITVADRL-------P-----L---EQLEQMAADRDYLVRAYVVQRI-------P--------PGRLFRF  154 (244)
T ss_dssp             GTTTCSCHHHHHHHHHHS-------C-----T---GGGGGGTTCSSHHHHHHHHHHS-------C--------GGGGGGT
T ss_pred             HHHcCCCHHHHHHHHHhC-------C-----H---HHHHHHHcCCCHHHHHHHHHhc-------C--------HHHHHHH
Confidence            778888888888888743       1     1   2355667888888888887632       2        1344567


Q ss_pred             ccCCcHHHHHHHHHHHHccccccChHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHhc
Q 009975          262 SSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAE  341 (521)
Q Consensus       262 ~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~  341 (521)
                      .+|+++.||..++..+       +.        +.+..+++|+++.||..++..+       +.        +.+..+.+
T Consensus       155 ~~D~d~~VR~~aa~~l-------~~--------~ll~~ll~D~d~~VR~aaa~~l-------~~--------~~L~~Ll~  204 (244)
T 1lrv_A          155 MRDEDRQVRKLVAKRL-------PE--------ESLGLMTQDPEPEVRRIVASRL-------RG--------DDLLELLH  204 (244)
T ss_dssp             TTCSCHHHHHHHHHHS-------CG--------GGGGGSTTCSSHHHHHHHHHHC-------CG--------GGGGGGGG
T ss_pred             HcCCCHHHHHHHHHcC-------CH--------HHHHHHHcCCCHHHHHHHHHhC-------CH--------HHHHHHHc
Confidence            7888888888887651       11        2344577888888888888763       11        23455678


Q ss_pred             CCChHHHHHHHHHhHHHHhhhChhhhHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 009975          342 DRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLK  395 (521)
Q Consensus       342 ~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~  395 (521)
                      |++|.||..++..++               .+.+..+ +|+++.||.++...|+
T Consensus       205 D~d~~VR~~aa~~l~---------------~~~L~~L-~D~~~~VR~aa~~~L~  242 (244)
T 1lrv_A          205 DPDWTVRLAAVEHAS---------------LEALREL-DEPDPEVRLAIAGRLG  242 (244)
T ss_dssp             CSSHHHHHHHHHHSC---------------HHHHHHC-CCCCHHHHHHHHCCC-
T ss_pred             CCCHHHHHHHHHcCC---------------HHHHHHc-cCCCHHHHHHHHHHhC
Confidence            888888888887754               1344445 8888888888776554

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.41  E-value=1.6e-11  Score=106.31  Aligned_cols=187  Identities=15%  Similarity=0.107  Sum_probs=133.8

Q ss_pred             hhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhCh---hhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhC---H
Q 009975          330 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---GFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFG---P  403 (521)
Q Consensus       330 ~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~---~  403 (521)
                      +...|.+..++.++++.+|..++.++..++..-..   .......+|.+..+++++++.+|..|+.+++.++....   .
T Consensus        11 ~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~   90 (210)
T 4db6_A           11 GSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ   90 (210)
T ss_dssp             --CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             cchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHH
Confidence            34455555666666666666666666665532111   11223467888888888888888888888888763211   1


Q ss_pred             HHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccCh---HHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhc
Q 009975          404 EWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS---EITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD  480 (521)
Q Consensus       404 ~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~---~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~  480 (521)
                      .......+|.+..++.+++..+|..++.+++.++.....   .......+|.++.++.++++.+|..++.+|..++....
T Consensus        91 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~  170 (210)
T 4db6_A           91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN  170 (210)
T ss_dssp             HHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCH
T ss_pred             HHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCc
Confidence            123355789999999999999999999999999863221   12345689999999999999999999999999987522


Q ss_pred             h---HHHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 009975          481 Q---SMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDH  516 (521)
Q Consensus       481 ~---~~~~~~~~~~l~~l~~D~~~~vr~~a~~al~~l~~  516 (521)
                      .   .......+|.|.+++.+++++||..|.+++..+.+
T Consensus       171 ~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  209 (210)
T 4db6_A          171 EQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS  209 (210)
T ss_dssp             HHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence            2   12335678999999999999999999999998864

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=99.41  E-value=6.5e-10  Score=87.58  Aligned_cols=216  Identities=17%  Similarity=0.152  Sum_probs=165.5

Q ss_pred             HHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHH-hcCCChHHHHHHHHHhHHHHhhhChhhhH
Q 009975          290 IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVEL-AEDRHWRVRLAIIEYIPLLASQLGVGFFD  368 (521)
Q Consensus       290 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~vr~~~~~~l~~l~~~~~~~~~~  368 (521)
                      .+.++..+..++.|+-+-|+++|+..+..+..... + +.+.++..+.-+ .++..-..-..++..++.+++.-+.  ..
T Consensus        30 d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~-e-l~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe--~v  105 (253)
T 2db0_A           30 DESVLKKLIELLDDDLWTVVKNAISIIMVIAKTRE-D-LYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPE--LV  105 (253)
T ss_dssp             CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCG-G-GHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHH--HH
T ss_pred             hHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhH-H-HHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHH--HH
Confidence            35677888889999999999999999998887544 1 113333333333 4667767777888888888876332  24


Q ss_pred             HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChHHHhhc
Q 009975          369 DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSR  448 (521)
Q Consensus       369 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~  448 (521)
                      ..++|.++....=.++..|.....+|+.+.....  .....++..+..++.++|..-|.+++.+++.++..  ...+...
T Consensus       106 ~~vVp~lfanyrigd~kikIn~~yaLeeIaranP--~l~~~v~rdi~smltskd~~Dkl~aLnFi~alGen--~~~yv~P  181 (253)
T 2db0_A          106 KSMIPVLFANYRIGDEKTKINVSYALEEIAKANP--MLMASIVRDFMSMLSSKNREDKLTALNFIEAMGEN--SFKYVNP  181 (253)
T ss_dssp             HHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCH--HHHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTT--THHHHGG
T ss_pred             HhhHHHHHHHHhcCCccceecHHHHHHHHHHhCh--HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcc--CccccCc
Confidence            6689999988888899999999999999987642  23455777788899999999999999999998762  2335678


Q ss_pred             HHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchHHHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 009975          449 LLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDH  516 (521)
Q Consensus       449 il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~~~~~~~~l~~l~~D~~~~vr~~a~~al~~l~~  516 (521)
                      ++|.++.+|.|.+.-||.+|.++|..++..-  +.+...+...+.+ .+|++..|......++..+.-
T Consensus       182 fLprL~aLL~D~deiVRaSaVEtL~~lA~~n--pklRkii~~kl~e-~~D~S~lv~~~V~egL~rl~l  246 (253)
T 2db0_A          182 FLPRIINLLHDGDEIVRASAVEALVHLATLN--DKLRKVVIKRLEE-LNDTSSLVNKTVKEGISRLLL  246 (253)
T ss_dssp             GHHHHHGGGGCSSHHHHHHHHHHHHHHHTSC--HHHHHHHHHHHHH-CCCSCHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHcCcchhhhHHHHHHHHHHHHcC--HHHHHHHHHHHHH-hcCcHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999998752  2244444444444 599999999999999988754

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=99.40  E-value=6.7e-11  Score=121.68  Aligned_cols=261  Identities=14%  Similarity=0.198  Sum_probs=205.7

Q ss_pred             hhhHHHHHhccCCcHHHHHHHHHHHHccccccCh----HHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchhhH
Q 009975          253 HILPCVKELSSDSSQHVRSALASVIMGMAPLLGK----DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL  328 (521)
Q Consensus       253 ~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~----~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~  328 (521)
                      .+...+.+.+.++...  +.++..+..++...+.    +.+.-.++|.++..+.|....||.+|..+...+...+.++..
T Consensus        54 ~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~  131 (986)
T 2iw3_A           54 HFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI  131 (986)
T ss_dssp             HHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH
T ss_pred             hHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH
Confidence            4666777777776555  7888888888866643    333345689999999999999999999999999999998887


Q ss_pred             hhhHHHHHHHHhcCC-ChHHHHHHHHHhHHHHhhhChh--hhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHHH
Q 009975          329 SQSLLPAIVELAEDR-HWRVRLAIIEYIPLLASQLGVG--FFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW  405 (521)
Q Consensus       329 ~~~~~~~l~~~~~~~-~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~  405 (521)
                       ..++|.+...+.+. .|+.+..++..+..+++..+..  ...+.++|.+...+.|..++|..+|..++..++..+++..
T Consensus       132 -~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d  210 (986)
T 2iw3_A          132 -KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKD  210 (986)
T ss_dssp             -HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTT
T ss_pred             -HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcc
Confidence             88899998877654 6999999999999999876432  2357799999999999999999999999999998887654


Q ss_pred             HHhhhHHHHHhhhcCcchHHHHHHHHHHHHhh--cccChHHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhch--
Q 009975          406 AMQHITPQVLEMINNPHYLYRMTILRAISLLA--PVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ--  481 (521)
Q Consensus       406 ~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~--~~~~~~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~--  481 (521)
                       .+..+|.|.+.+.+|+. +- .++..++...  .... .....-+.|.+.+.|.++...++..++-.+.+|++-+..  
T Consensus       211 -~~~~~~~~~~~~~~p~~-~~-~~~~~l~~~tfv~~v~-~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~  286 (986)
T 2iw3_A          211 -IERFIPSLIQCIADPTE-VP-ETVHLLGATTFVAEVT-PATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQ  286 (986)
T ss_dssp             -TGGGHHHHHHHHHCTTH-HH-HHHHHHTTCCCCSCCC-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHH
T ss_pred             -hhhhHHHHHHHhcChhh-hH-HHHHHhhcCeeEeeec-chhHHHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHH
Confidence             35689999999988843 22 2233332211  1111 223566889999999999999999999999999987754  


Q ss_pred             --HHHHhhHHHHHHHh-cCCCCccHHHHHHHHHHHHHHhhcc
Q 009975          482 --SMVEKTIRPCLVEL-TEDPDVDVRFFATQAIQSIDHVMMS  520 (521)
Q Consensus       482 --~~~~~~~~~~l~~l-~~D~~~~vr~~a~~al~~l~~~~~~  520 (521)
                        ..|.+.++|.+.+. -+-.+|++|..+.+|+.+|.+..+.
T Consensus       287 ~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~~~~  328 (986)
T 2iw3_A          287 VIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTLRRVGNV  328 (986)
T ss_dssp             HHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHhhcc
Confidence              35678899999985 4457999999999999999887653

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.34  E-value=6.9e-11  Score=102.34  Aligned_cols=186  Identities=16%  Similarity=0.116  Sum_probs=125.1

Q ss_pred             hHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhch---hhHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhCh---h
Q 009975          292 QLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---G  365 (521)
Q Consensus       292 ~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~---~  365 (521)
                      ...|.+..+++++++++|..|+.++..++..-..   .......+|.+.+++.++++.+|..++.+++.++.....   .
T Consensus        12 ~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~   91 (210)
T 4db6_A           12 SELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA   91 (210)
T ss_dssp             -CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred             chhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHH
Confidence            4456666677777777777777777666532111   112235667777777777777777777777666532111   1


Q ss_pred             hhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCH---HHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccCh
Q 009975          366 FFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP---EWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS  442 (521)
Q Consensus       366 ~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~  442 (521)
                      ......+|.+..+++++++.+|..|+.+++.++.....   .......+|.|.+++.+++..+|..++.+++.++.....
T Consensus        92 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~  171 (210)
T 4db6_A           92 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE  171 (210)
T ss_dssp             HHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHH
T ss_pred             HHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcH
Confidence            12233577888888888888888888888888642111   112356788888888888899999999999998863211


Q ss_pred             ---HHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHh
Q 009975          443 ---EITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIP  477 (521)
Q Consensus       443 ---~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~  477 (521)
                         .......++.+..++.++++.+|..|+.+|..++.
T Consensus       172 ~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  209 (210)
T 4db6_A          172 QKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS  209 (210)
T ss_dssp             HHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence               11234678899999999999999999999988753

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}

Probab=99.25  E-value=2.7e-08  Score=108.02  Aligned_cols=489  Identities=12%  Similarity=0.047  Sum_probs=271.2

Q ss_pred             hHHhhhhHHhhhhcC-chhHHHHHHHHHHHHHHhhcChhHHHHhHHHHHHHhh-cCCCCcchhhhhhhhhhh----cCCC
Q 009975           17 HAHVLLPPLETLCTV-EETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLA-AGEWFTARVSACGLFHIA----YPSA   90 (521)
Q Consensus        17 ~~~~l~~~l~~l~~~-~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~p~i~~~~-~~~~~~~r~~~~~~~~~~----~~~~   90 (521)
                      ....+...+....+. .+.++|+.|.+.|..+-+. + + .+..+.   ..+. .+.+..+|..+...+...    +..+
T Consensus         9 ~~~~l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~-p-~-~~~~~~---~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l   82 (1204)
T 3a6p_A            9 LCEQLVKAVTVMMDPNSTQRYRLEALKFCEEFKEK-C-P-ICVPCG---LRLAEKTQVAIVRHFGLQILEHVVKFRWNGM   82 (1204)
T ss_dssp             HHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHH-C-T-THHHHH---HHHTSTTSCHHHHHHHHHHHHHHHHHSGGGS
T ss_pred             HHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHhC-c-h-HHHHHH---HHHHccCCCHHHHHHHHHHHHHHHHHhcccC
Confidence            444566666665553 4778899999998886543 1 1 111222   2223 344567787776555433    3456


Q ss_pred             ChHHHHHHHHHHHHhcC-------CCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHH
Q 009975           91 PDILKTELRSIYTQLCQ-------DDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAAL  163 (521)
Q Consensus        91 ~~~~~~~l~~~l~~l~~-------~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l  163 (521)
                      +++.+..+...+..++.       +..+.||..++.++..+++..-+ ..|+.+++.+.++.+. +...+..+..+|..+
T Consensus        83 ~~e~k~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p-~~Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L  160 (1204)
T 3a6p_A           83 SRLEKVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWP-QHWPDMLIELDTLSKQ-GETQTELVMFILLRL  160 (1204)
T ss_dssp             CHHHHHHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHST-TTCTTHHHHHHHHHHT-CHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCc-ccchHHHHHHHHHhcC-CHHHHHHHHHHHHHH
Confidence            76655555555544322       14689999999999999987543 4588888888888765 456688888888888


Q ss_pred             hhhcCh-----hhh-----------hhhhHHHHHHhcCC-------------------CChHHHHHHHHHHHHHHHHhCC
Q 009975          164 GKLLEP-----QDC-----------VAHILPVIVNFSQD-------------------KSWRVRYMVANQLYELCEAVGP  208 (521)
Q Consensus       164 ~~~~~~-----~~~-----------~~~l~~~l~~~~~d-------------------~~~~vR~~~~~~l~~i~~~~~~  208 (521)
                      .+.+..     ...           .+.+++.+...+++                   .+..++..+.+++..+....+.
T Consensus       161 ~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~  240 (1204)
T 3a6p_A          161 AEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSM  240 (1204)
T ss_dssp             HHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCH
T ss_pred             HHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCH
Confidence            764211     000           11344444433322                   1234555566655544332221


Q ss_pred             Ccc---ccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhC-HHHHH---Hhh----hHHHHHhc--------cCCcHHH
Q 009975          209 EPT---RMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN-PELAI---QHI----LPCVKELS--------SDSSQHV  269 (521)
Q Consensus       209 ~~~---~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~-~~~~~---~~~----~~~l~~~~--------~d~~~~v  269 (521)
                      ...   ...+++.+..++.+  +.+|.+|+++|..+..... ++...   ..+    +..+....        .+.+..+
T Consensus       241 ~~i~~~~~~ll~~l~~~l~~--~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~  318 (1204)
T 3a6p_A          241 SHITAENCKLLEILCLLLNE--QELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVF  318 (1204)
T ss_dssp             HHHHTTTSHHHHHHHHGGGC--TTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHH
T ss_pred             HHHHhccchHHHHHHHHcCC--HHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHH
Confidence            111   12478888888776  4699999999999987543 22211   111    11122221        2223445


Q ss_pred             HHHHHHHHHccccccC----------hHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhc--h-hh---HhhhHH
Q 009975          270 RSALASVIMGMAPLLG----------KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG--I-DL---LSQSLL  333 (521)
Q Consensus       270 r~~~~~~l~~i~~~~~----------~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~--~-~~---~~~~~~  333 (521)
                      ++..++.+..++..+-          .......+++.++.+..+++..+-..++..+..+.+...  . +.   +...++
T Consensus       319 ~k~l~~ll~~lg~~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~~~~~~~~~~~~~l~~Ll  398 (1204)
T 3a6p_A          319 LKRLCQVLCALGNQLCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRHEILSRDPLLLAIIPKYL  398 (1204)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSCTTTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhcccccccHHHHHHHHHHH
Confidence            5555555554432111          112245788999999999988888888887777665432  1 11   123333


Q ss_pred             HHHHHHh------cC---------------------CChHHHHHHHHHhHHHHhhhChhhhHHHHHHHHHHHcCC-----
Q 009975          334 PAIVELA------ED---------------------RHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQD-----  381 (521)
Q Consensus       334 ~~l~~~~------~~---------------------~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d-----  381 (521)
                      +.+...+      .+                     ..+..|......+..++...+.. ..+.+.+.+...+.+     
T Consensus       399 ~vl~~~l~k~~yp~~~~~~~~~~~~~D~d~~~E~~~~f~~~Rk~~~d~l~~i~~v~p~~-~l~~v~~~l~~~l~~~l~~~  477 (1204)
T 3a6p_A          399 RASMTNLVKMGFPSKTDSPSCEYSRFDFDSDEDFNAFFNSSRAQQGEVMRLACRLDPKT-SFQMAGEWLKYQLSTFLDAG  477 (1204)
T ss_dssp             HHHHHHHSCCCCSSCCSSTHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCHHH-HHHHHHHHHHHHHTCC----
T ss_pred             HHHHHHHHHhcCccccCCcchhhhhcccCCcHHHHHHHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHHhhhhccc
Confidence            3331101      10                     01345666666666666544332 233444544333322     


Q ss_pred             --------------------CcHHHHHHHHHHHHHHHHHh---C-HHHHHhhhHHHHHhhh---cCcchHHHHHHHHHHH
Q 009975          382 --------------------KVYSIRDAAANNLKRLAEEF---G-PEWAMQHITPQVLEMI---NNPHYLYRMTILRAIS  434 (521)
Q Consensus       382 --------------------~~~~vr~~a~~~l~~l~~~~---~-~~~~~~~l~~~l~~~l---~~~~~~~r~~a~~~l~  434 (521)
                                          +.+...++....++.+...+   . .+.....+++.+...+   +..++.+|.+.+.+++
T Consensus       478 ~~~~~~~~~~~~~~~~~~~s~~~~~~ea~~~~leav~~~~~~~~e~~~l~~~~~~~Ll~~ll~~~~~~p~l~~~~i~~l~  557 (1204)
T 3a6p_A          478 SVNSCSAVGTGEGSLCSVFSPSFVQWEAMTLFLESVITQMFRTLNREEIPVNDGIELLQMVLNFDTKDPLILSCVLTNVS  557 (1204)
T ss_dssp             -------------CCSCSSSHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCHHHHHHHHHHHHHCCCSCHHHHHHHHHHHH
T ss_pred             ccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Confidence                                22333445444454444433   1 1111112455555542   3457889999999999


Q ss_pred             HhhcccCh-HHHhhcHHHHHHhhcCC------------CCchHHHHHHHHHHHHHhhhchH--HHHhhHHHHHHHhcC--
Q 009975          435 LLAPVMGS-EITCSRLLPVVINASKD------------RVPNIKFNVAKVLQSLIPIVDQS--MVEKTIRPCLVELTE--  497 (521)
Q Consensus       435 ~l~~~~~~-~~~~~~il~~l~~~l~d------------~~~~VR~~a~~~l~~~~~~~~~~--~~~~~~~~~l~~l~~--  497 (521)
                      .+...+.. ..+.+.+++.++..+.+            .+..||.+|+.++..++...+..  .+.+.+...+..+..  
T Consensus       558 ~l~~~~~~~p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~L~~~~~~~L~p~~~~i~~~~~~~l~~~  637 (1204)
T 3a6p_A          558 ALFPFVTYRPEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSIIKMCRDYPQLVLPNFDMLYNHVKQLLSNE  637 (1204)
T ss_dssp             HHGGGGGTCGGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHST
T ss_pred             HHHHHHhcCchHHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCc
Confidence            88875442 33566777777777665            24479999999999999876543  122444444444332  


Q ss_pred             C-CCccHHHHHHHHHHHHHH
Q 009975          498 D-PDVDVRFFATQAIQSIDH  516 (521)
Q Consensus       498 D-~~~~vr~~a~~al~~l~~  516 (521)
                      . -+..=+.....++..+..
T Consensus       638 ~~l~~~e~~~L~eal~~ia~  657 (1204)
T 3a6p_A          638 LLLTQMEKCALMEALVLISN  657 (1204)
T ss_dssp             TTSCHHHHHHHHHHHHHHHG
T ss_pred             ccccHHHHHHHHHHHHHHhc
Confidence            1 224445555666665543

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=99.25  E-value=1.2e-09  Score=95.02  Aligned_cols=180  Identities=16%  Similarity=0.108  Sum_probs=136.4

Q ss_pred             HhhcCCChHHHHHHHHHHHHhhhhhchhhH--hhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChhh-----h-HHH
Q 009975          299 SLLKDEFPDVRLNIISKLDQVNQVIGIDLL--SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF-----F-DDK  370 (521)
Q Consensus       299 ~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~-----~-~~~  370 (521)
                      ..+-+.+...|..++..+....+....+.+  .+.+++.+.-.+.|.|..+-..+++.+..+...++...     + ...
T Consensus        53 ~~lfs~d~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~  132 (266)
T 2of3_A           53 SQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSA  132 (266)
T ss_dssp             HHHTCSCHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred             HHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHH
Confidence            344455667777777766665543222111  01123333323358899998899999888877665421     1 356


Q ss_pred             HHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChHHHhhcHH
Q 009975          371 LGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLL  450 (521)
Q Consensus       371 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~il  450 (521)
                      ++|.++.-+.|+...||..+-..+..+...+++    ..+++.+.+.+++.||+.|..++..++.+.+..|..  ....+
T Consensus       133 ~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~----~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~--~~~~l  206 (266)
T 2of3_A          133 FVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP----LKMTPMLLDALKSKNARQRSECLLVIEYYITNAGIS--PLKSL  206 (266)
T ss_dssp             HHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH----HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG--GGGGG
T ss_pred             HHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCH----HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC--ccccc
Confidence            899999999999999999999999888877653    457788888889999999999999999999988876  34567


Q ss_pred             ---HHHHhhcCCCCchHHHHHHHHHHHHHhhhchHHH
Q 009975          451 ---PVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMV  484 (521)
Q Consensus       451 ---~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~  484 (521)
                         |.+..+++|++..||.+|++++..++...|...+
T Consensus       207 ~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~v~  243 (266)
T 2of3_A          207 SVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQMW  243 (266)
T ss_dssp             CHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred             cchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHH
Confidence               9999999999999999999999999998887644

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=99.24  E-value=2.7e-09  Score=109.95  Aligned_cols=314  Identities=16%  Similarity=0.196  Sum_probs=219.5

Q ss_pred             hhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCcc-c---cchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHH
Q 009975          175 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPT-R---MDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELA  250 (521)
Q Consensus       175 ~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~-~---~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~  250 (521)
                      .++..+.+.+.+....  ..++..+..++...+.... .   -.++|.+.....|....||.+|..+...+...++++..
T Consensus        54 ~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~  131 (986)
T 2iw3_A           54 HFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI  131 (986)
T ss_dssp             HHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH
T ss_pred             hHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH
Confidence            5777777777776544  7788888888765543211 1   23578888888999999999999999999999998765


Q ss_pred             HHhhhHHHHHhccCC-cHHHHHHHHHHHHccccccChHH--HHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchhh
Q 009975          251 IQHILPCVKELSSDS-SQHVRSALASVIMGMAPLLGKDA--TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL  327 (521)
Q Consensus       251 ~~~~~~~l~~~~~d~-~~~vr~~~~~~l~~i~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~  327 (521)
                       ..++|.+...+.+. .|..+.+++..+..++...+...  ...+++|.+...+.|..++|...|..++..++..++...
T Consensus       132 -~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d  210 (986)
T 2iw3_A          132 -KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKD  210 (986)
T ss_dssp             -HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTT
T ss_pred             -HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcc
Confidence             66788887777554 69999999999999987654332  356899999999999999999999999999999999777


Q ss_pred             HhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhh--C--hhhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCH
Q 009975          328 LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL--G--VGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP  403 (521)
Q Consensus       328 ~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~--~--~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~  403 (521)
                      + +..+|.+.+.+.+++. |    -+++..++...  .  ......-+.|++...|+++...+++.++-.+.++++-...
T Consensus       211 ~-~~~~~~~~~~~~~p~~-~----~~~~~~l~~~tfv~~v~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~  284 (986)
T 2iw3_A          211 I-ERFIPSLIQCIADPTE-V----PETVHLLGATTFVAEVTPATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVED  284 (986)
T ss_dssp             T-GGGHHHHHHHHHCTTH-H----HHHHHHHTTCCCCSCCCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCC
T ss_pred             h-hhhHHHHHHHhcChhh-h----HHHHHHhhcCeeEeeecchhHHHHHHHHHhhhccCcchhheeeEEEEcchhhhcCC
Confidence            6 7889999999988853 2    23333332221  1  1233567899999999999999999999999999987754


Q ss_pred             H----HHHhhhHHHHHhhhcC-cchHHHHHHHHHHHHhhcccCh--HH---------HhhcHHHHHHhhcCCCC-----c
Q 009975          404 E----WAMQHITPQVLEMINN-PHYLYRMTILRAISLLAPVMGS--EI---------TCSRLLPVVINASKDRV-----P  462 (521)
Q Consensus       404 ~----~~~~~l~~~l~~~l~~-~~~~~r~~a~~~l~~l~~~~~~--~~---------~~~~il~~l~~~l~d~~-----~  462 (521)
                      .    .+...++|.+...... +++.+|..+-.++..+....+.  +.         -...++..+...+....     .
T Consensus       285 ~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  364 (986)
T 2iw3_A          285 PQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTLRRVGNVGEDDAIPELSHAGDVSTTLQVVNELLKDETVAPRFK  364 (986)
T ss_dssp             HHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHHHTCBTTTBCCCCCCTTCHHHHHHHHHHHTTTSCCCGGGH
T ss_pred             HHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHhhccccccccccccccchHHHHHHHHHHHhcccccccchh
Confidence            3    3456777777775543 6788998888888877553222  00         01234444555444321     2


Q ss_pred             hHHHHHHHHHHHHHhh--hchHHHHhhHHHHHHHhcC
Q 009975          463 NIKFNVAKVLQSLIPI--VDQSMVEKTIRPCLVELTE  497 (521)
Q Consensus       463 ~VR~~a~~~l~~~~~~--~~~~~~~~~~~~~l~~l~~  497 (521)
                      .+...++...+.++..  +....+...+.|.+..+..
T Consensus       365 ~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  401 (986)
T 2iw3_A          365 IVVEYIAAIGADLIDERIIDQQAWFTHITPYMTIFLH  401 (986)
T ss_dssp             HHHHHHHHHHHHHHHTTCCSHHHHHHHTHHHHTTTSC
T ss_pred             hHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHhcc
Confidence            2334444444444332  1223345667777776554

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A

Probab=99.24  E-value=9.6e-08  Score=100.68  Aligned_cols=486  Identities=9%  Similarity=0.029  Sum_probs=270.7

Q ss_pred             hhhhHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHHHhHHHHHHHhhc-CCCCcchhhhhhhhhhh----cCCCChH-
Q 009975           20 VLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAA-GEWFTARVSACGLFHIA----YPSAPDI-   93 (521)
Q Consensus        20 ~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~p~i~~~~~-~~~~~~r~~~~~~~~~~----~~~~~~~-   93 (521)
                      .+-..+..+. ++++..|+.|.+.|..+-+.  +     .-++....+.. +.+..+|..|...+...    +..++++ 
T Consensus        29 ~Le~lv~~ly-~p~~~~r~qA~~~L~q~q~s--p-----~aw~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~~L~~e~  100 (1073)
T 3gjx_A           29 LLDNVVNCLY-HGEGAQQRMAQEVLTHLKEH--P-----DAWTRVDTILEFSQNMNTKYYGLQILENVIKTRWKILPRNQ  100 (1073)
T ss_dssp             HHHHHHHTTT-CSSHHHHHHHHHHHHTSSCC--S-----CHHHHHTCC---CCSHHHHHHHHHHHHHHHHHTGGGSCHHH
T ss_pred             HHHHHHHHHh-CCCHHHHHHHHHHHHHHHcC--c-----hHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhhCCHHH
Confidence            3334444444 45677899999888665442  1     12233323322 34567787777665443    3456665 


Q ss_pred             ---HHHHHHHHHHHhcCC-----CChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhh
Q 009975           94 ---LKTELRSIYTQLCQD-----DMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGK  165 (521)
Q Consensus        94 ---~~~~l~~~l~~l~~~-----~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~  165 (521)
                         .++.++..+.+...+     .++.++...+.++..+++..-+ ..|+.+++.+..+.+. ++..+...+.+|..+.+
T Consensus       101 ~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P-~~Wp~fi~dLv~~~~~-~~~~~~~~L~IL~~L~E  178 (1073)
T 3gjx_A          101 CEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWP-KHWPTFISDIVGASRT-SESLCQNNMVILKLLSE  178 (1073)
T ss_dssp             HHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTT-TTCTTHHHHHHHHHHH-CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhCh-hhccHHHHHHHHHhCC-CHHHHHHHHHHHHHHHH
Confidence               445555555554433     3578889999999999877443 3477777777776653 34556777888888877


Q ss_pred             hcCh--------h----------hhhhhhHHHHHHhc-CCCChHHHHHHHHHHHHHHHHhCCCc-cccchHHHH-HHhcC
Q 009975          166 LLEP--------Q----------DCVAHILPVIVNFS-QDKSWRVRYMVANQLYELCEAVGPEP-TRMDLVPAY-VRLLR  224 (521)
Q Consensus       166 ~~~~--------~----------~~~~~l~~~l~~~~-~d~~~~vR~~~~~~l~~i~~~~~~~~-~~~~l~~~l-~~~l~  224 (521)
                      .+.+        .          ...+.+++++...+ ...++.+...+.++++.+..-++-+. ....+++.+ ..++.
T Consensus       179 EV~d~~~~~l~~~r~~~lk~~L~~~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~i~~i~~~~ll~~L~~~~L~  258 (1073)
T 3gjx_A          179 EVFDFSSGQITQVKAKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIPLGYIFETKLISTLIYKFLN  258 (1073)
T ss_dssp             HHTTSHHHHBCHHHHHHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHHHTSS
T ss_pred             HHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcCHHHhccchHHHHHHHHhcC
Confidence            6432        0          01123555554444 34577788888888888877655332 235688877 57775


Q ss_pred             CChHHHHHHHHHhHHHHHhhhCH---HH---HHHhhhHHHHHhc-------------cCCcHHHHHHHHHHHHccccccC
Q 009975          225 DNEAEVRIAAAGKVTKFCRILNP---EL---AIQHILPCVKELS-------------SDSSQHVRSALASVIMGMAPLLG  285 (521)
Q Consensus       225 d~~~~vr~~a~~~l~~l~~~~~~---~~---~~~~~~~~l~~~~-------------~d~~~~vr~~~~~~l~~i~~~~~  285 (521)
                      +  +.+|.+|+++|..+...-.+   +.   ....++..+...+             .+.+...-...+..+..+.....
T Consensus       259 ~--~~~r~aA~dcL~eIv~k~~~~~~~~~~~lf~~~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~  336 (1073)
T 3gjx_A          259 V--PMFRNVSLKCLTEIAGVSVSQYEEQFETLFTLTMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHG  336 (1073)
T ss_dssp             S--HHHHHHHHHHHHHHHHSCSGGGHHHHHHHHHHHHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             C--hHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHHH
Confidence            4  57999999999998764211   11   1111221111111             12222222233333333322211


Q ss_pred             h------H--HHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchh--------------------hHhhhHHHHHH
Q 009975          286 K------D--ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID--------------------LLSQSLLPAIV  337 (521)
Q Consensus       286 ~------~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~--------------------~~~~~~~~~l~  337 (521)
                      .      +  ......+..+..+..-++.++-+.+...+..+...+-.+                    .......|.+.
T Consensus       337 ~lIe~~p~~~~~l~~~l~~ll~~s~~~d~ei~kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~  416 (1073)
T 3gjx_A          337 QLLEKRLNLREALMEALHYMLLVSEVEETEIFKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLS  416 (1073)
T ss_dssp             HHHHHCGGGHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHH
T ss_pred             HHHhcCccchHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhHHHHHHHHHH
Confidence            1      1  111223444566666778888888888777665543211                    01111233332


Q ss_pred             HHh-------c----------CCCh------------HHHHHHHHHhHHHHhhhChhhhHHHHHHHHHHHcC--CCcHHH
Q 009975          338 ELA-------E----------DRHW------------RVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQ--DKVYSI  386 (521)
Q Consensus       338 ~~~-------~----------~~~~------------~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~--d~~~~v  386 (521)
                      ++.       .          +...            ..+...-+++..+ .+++.+.....+.+.+.+.+.  ..+|..
T Consensus       417 ~L~~vlI~~m~~P~ev~i~e~e~ge~~re~~~d~~~~~ly~~mrd~L~~l-t~l~~~~~~~i~~~~l~~~~~~~~~sW~~  495 (1073)
T 3gjx_A          417 KVRLLMVSRMAKPEEVLVVENDQGEVVREFMKDTDSINLYKNMRETLVYL-THLDYVDTEIIMTKKLQNQVNGTEWSWKN  495 (1073)
T ss_dssp             HHHHHHHHTCCCSCCEEEEECSSSCEEEEECSSCHHHHHHHHHHHHHHHH-HHHCHHHHHHHHHHHHHHHHTSCCCCHHH
T ss_pred             HHHHHHHHhcCCCccccccCcccchHHHHHHhhcchHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHhcCCCCCHHH
Confidence            221       0          0000            1122222333332 344444444555565554444  356999


Q ss_pred             HHHHHHHHHHHHHHhCHH---HHHhhhHHHHHhhhcCc-----chHHHHHHHHHHHHhhcccCh-HHHhhcHHHHHHhhc
Q 009975          387 RDAAANNLKRLAEEFGPE---WAMQHITPQVLEMINNP-----HYLYRMTILRAISLLAPVMGS-EITCSRLLPVVINAS  457 (521)
Q Consensus       387 r~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~~~-----~~~~r~~a~~~l~~l~~~~~~-~~~~~~il~~l~~~l  457 (521)
                      +++++.++|.++..+..+   .+...+++.|..+...+     ...++...+..+|...+-+.. ..+.+.++..++..+
T Consensus       496 lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~vl~~L~~~m  575 (1073)
T 3gjx_A          496 LNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKTVVNKLFEFM  575 (1073)
T ss_dssp             HHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHT
T ss_pred             HhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHHHHHHHHHHH
Confidence            999999999997665532   23455666666554332     355677677788887664322 335677888888889


Q ss_pred             CCCCchHHHHHHHHHHHHHhhhchHH----------HHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHHhh
Q 009975          458 KDRVPNIKFNVAKVLQSLIPIVDQSM----------VEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVM  518 (521)
Q Consensus       458 ~d~~~~VR~~a~~~l~~~~~~~~~~~----------~~~~~~~~l~~l~~D~~~~vr~~a~~al~~l~~~~  518 (521)
                      .++++.|+.+|+.++..+++..+...          +...++..+.....+=+++-.....+|++.+..-.
T Consensus       576 ~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~lyeav~~vi~~~  646 (1073)
T 3gjx_A          576 HETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGYMIGAQ  646 (1073)
T ss_dssp             TCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHHHHHHHHHHHTTC
T ss_pred             hcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhC
Confidence            99999999999999999988765432          22333333334444445555566666666655443

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=99.22  E-value=3e-09  Score=98.61  Aligned_cols=214  Identities=12%  Similarity=0.045  Sum_probs=159.4

Q ss_pred             cHHHHHHHHHHHHccccccCh--HHH--HHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhc---hhh-HhhhHHHHHH
Q 009975          266 SQHVRSALASVIMGMAPLLGK--DAT--IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG---IDL-LSQSLLPAIV  337 (521)
Q Consensus       266 ~~~vr~~~~~~l~~i~~~~~~--~~~--~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~---~~~-~~~~~~~~l~  337 (521)
                      +..+|..+++++..++..-..  ..+  ....+|.+..++.+++++++..|+.+|..+...-+   ... .....+|.+.
T Consensus        97 ~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv  176 (354)
T 3nmw_A           97 SITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALM  176 (354)
T ss_dssp             HHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHH
Confidence            467899999999999854321  122  13469999999999999999999999999875311   122 2246788888


Q ss_pred             HH-hcCCChHHHHHHHHHhHHHHhhhCh--hhh--HHHHHHHHHHHcCCCcH----HHHHHHHHHHHHHHHHh--CHHH-
Q 009975          338 EL-AEDRHWRVRLAIIEYIPLLASQLGV--GFF--DDKLGALCMQWLQDKVY----SIRDAAANNLKRLAEEF--GPEW-  405 (521)
Q Consensus       338 ~~-~~~~~~~vr~~~~~~l~~l~~~~~~--~~~--~~~l~~~l~~~l~d~~~----~vr~~a~~~l~~l~~~~--~~~~-  405 (521)
                      ++ ..+.+..++..++.++..++.....  ..+  ....+|.+..++.+.+.    .++..|..+|..+....  +.+. 
T Consensus       177 ~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~  256 (354)
T 3nmw_A          177 ECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHR  256 (354)
T ss_dssp             HHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHH
Confidence            86 5667889999999999888863321  122  24578899999886554    58998999998887531  2221 


Q ss_pred             ---HHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccCh---HHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhh
Q 009975          406 ---AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS---EITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIV  479 (521)
Q Consensus       406 ---~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~---~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~  479 (521)
                         .....+|.|..++.+++..++..|+.++..++..-..   .......+|.+..++.++++.+|..|+.+|..+...-
T Consensus       257 ~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~  336 (354)
T 3nmw_A          257 QILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR  336 (354)
T ss_dssp             HHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence               2245789999999999999999999999999842111   1223567899999999999999999999999998763

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=99.21  E-value=1.4e-09  Score=100.85  Aligned_cols=249  Identities=11%  Similarity=-0.012  Sum_probs=174.1

Q ss_pred             HHHHHHHHHHccccccCh--HHHHHhHHHHHHHhhcC-----------CChHHHHHHHHHHHHhhhhhc--hhhH--hhh
Q 009975          269 VRSALASVIMGMAPLLGK--DATIEQLLPIFLSLLKD-----------EFPDVRLNIISKLDQVNQVIG--IDLL--SQS  331 (521)
Q Consensus       269 vr~~~~~~l~~i~~~~~~--~~~~~~l~~~l~~~l~d-----------~~~~vr~~a~~~l~~~~~~~~--~~~~--~~~  331 (521)
                      ....+++++++++..-..  .......+|.+..++..           .++.++..|+.+|..++..-.  +..+  ...
T Consensus        48 ~~~~A~~aL~nls~d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~G  127 (354)
T 3nmw_A           48 QICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKG  127 (354)
T ss_dssp             THHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCC
Confidence            344566666666532100  01122356666666631           246799999999999975322  1122  245


Q ss_pred             HHHHHHHHhcCCChHHHHHHHHHhHHHHhhhCh---hh-hHHHHHHHHHHH-cCCCcHHHHHHHHHHHHHHHHHh-C--H
Q 009975          332 LLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---GF-FDDKLGALCMQW-LQDKVYSIRDAAANNLKRLAEEF-G--P  403 (521)
Q Consensus       332 ~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~---~~-~~~~l~~~l~~~-l~d~~~~vr~~a~~~l~~l~~~~-~--~  403 (521)
                      .+|.+.+++.+++..++..++.+|..++..-+.   .. .....+|.+..+ ++..+..+++.|+.++..+.... +  .
T Consensus       128 aIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~  207 (354)
T 3nmw_A          128 CMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKA  207 (354)
T ss_dssp             HHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             cHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhH
Confidence            699999999999999999999999999764211   11 123457888886 56678899999999998887522 1  1


Q ss_pred             HHH-HhhhHHHHHhhhcCcch----HHHHHHHHHHHHhhcc--cChHH----HhhcHHHHHHhhcCCCCchHHHHHHHHH
Q 009975          404 EWA-MQHITPQVLEMINNPHY----LYRMTILRAISLLAPV--MGSEI----TCSRLLPVVINASKDRVPNIKFNVAKVL  472 (521)
Q Consensus       404 ~~~-~~~l~~~l~~~l~~~~~----~~r~~a~~~l~~l~~~--~~~~~----~~~~il~~l~~~l~d~~~~VR~~a~~~l  472 (521)
                      ... ....+|.|..++.+++.    .++..++.++..++..  .+.+.    .....+|.++.++.+++..++..|+.+|
T Consensus       208 ~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL  287 (354)
T 3nmw_A          208 DICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTL  287 (354)
T ss_dssp             HHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred             HHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHH
Confidence            222 35688999998876543    5888999999988752  12221    2345789999999999999999999999


Q ss_pred             HHHHhhhch---HHHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHHh
Q 009975          473 QSLIPIVDQ---SMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHV  517 (521)
Q Consensus       473 ~~~~~~~~~---~~~~~~~~~~l~~l~~D~~~~vr~~a~~al~~l~~~  517 (521)
                      ..++..-..   .....-.+|.|.+++.+.+.++|..|++++..|..-
T Consensus       288 ~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~  335 (354)
T 3nmw_A          288 WNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN  335 (354)
T ss_dssp             HHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTT
T ss_pred             HHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence            999842111   123356789999999999999999999999998753

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A

Probab=99.16  E-value=5.3e-07  Score=95.12  Aligned_cols=460  Identities=8%  Similarity=-0.011  Sum_probs=256.5

Q ss_pred             chhHHhhhhHHhhhhcCchhHHHHHHHHHHHHHHhh----cChh---HHHHhHHHHHHHhhcCC-----CCcchhhhhhh
Q 009975           15 VEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQ----MRES---DLVDWYIPLVKRLAAGE-----WFTARVSACGL   82 (521)
Q Consensus        15 ~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~----~~~~---~~~~~l~p~i~~~~~~~-----~~~~r~~~~~~   82 (521)
                      ++.+.....+|   .++.++.+|..|...|...++.    ++++   .+++.++.++.+...++     ...++...+.+
T Consensus        59 p~aw~~~~~iL---~~s~~~~vR~fAa~~L~~~I~~~W~~L~~e~~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~  135 (1073)
T 3gjx_A           59 PDAWTRVDTIL---EFSQNMNTKYYGLQILENVIKTRWKILPRNQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMI  135 (1073)
T ss_dssp             SCHHHHHTCC------CCSHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHH
T ss_pred             chHHHHHHHHh---cCCCCHHHHHHHHHHHHHHHHhhhhhCCHHHHHHHHHHHHHHHHHHccCccccccchHHHHHHHHH
Confidence            34444444333   2356889999999999887774    5554   46678888877655432     22334444444


Q ss_pred             hhhhcCCCChHHHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCch------------------hhHHHHHHHHHHh
Q 009975           83 FHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPA------------------HLKTDIMSIFEDL  144 (521)
Q Consensus        83 ~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~------------------~~~~~l~~~l~~l  144 (521)
                      +..++.+.-++.++.+++-+.++.+. ++..+......|..+.+.+..-                  ...+.+++++...
T Consensus       136 La~I~k~~~P~~Wp~fi~dLv~~~~~-~~~~~~~~L~IL~~L~EEV~d~~~~~l~~~r~~~lk~~L~~~~~~Il~ll~~i  214 (1073)
T 3gjx_A          136 LVQILKQEWPKHWPTFISDIVGASRT-SESLCQNNMVILKLLSEEVFDFSSGQITQVKAKHLKDSMCNEFSQIFQLCQFV  214 (1073)
T ss_dssp             HHHHHHHHTTTTCTTHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHTTSHHHHBCHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHhChhhccHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444322111244455555554432 3556666777777777663210                  1124466666665


Q ss_pred             hc-CCChhHHHHHHHHHHHHhhhcChhhh-hhhhHHHH-HHhcCCCChHHHHHHHHHHHHHHHHhCCCccccchHHHH--
Q 009975          145 TQ-DDQDSVRLLAVEGCAALGKLLEPQDC-VAHILPVI-VNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAY--  219 (521)
Q Consensus       145 ~~-d~~~~vr~~a~~~l~~l~~~~~~~~~-~~~l~~~l-~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l--  219 (521)
                      +. ..++.+...+.++++...+-++-+.. ...+++.+ ..++.  ++..|..+++++..++..-. +.....+...+  
T Consensus       215 L~~~~~~~lv~~~L~~L~~~~sWI~i~~i~~~~ll~~L~~~~L~--~~~~r~aA~dcL~eIv~k~~-~~~~~~~~~lf~~  291 (1073)
T 3gjx_A          215 MENSQNAPLVHATLETLLRFLNWIPLGYIFETKLISTLIYKFLN--VPMFRNVSLKCLTEIAGVSV-SQYEEQFETLFTL  291 (1073)
T ss_dssp             HHHCCCHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHHHTSS--SHHHHHHHHHHHHHHHHSCS-GGGHHHHHHHHHH
T ss_pred             hcccCCHHHHHHHHHHHHHHHHhcCHHHhccchHHHHHHHHhcC--ChHHHHHHHHHHHHHHhccc-cchHHHHHHHHHH
Confidence            54 34667778888999988887765432 34577766 46654  56799999999999886411 11111221111  


Q ss_pred             -----HHhc-------------CCChHHHHHHHHHhHHHHHhhhC------HH--HHHHhhhHHHHHhccCCcHHHHHHH
Q 009975          220 -----VRLL-------------RDNEAEVRIAAAGKVTKFCRILN------PE--LAIQHILPCVKELSSDSSQHVRSAL  273 (521)
Q Consensus       220 -----~~~l-------------~d~~~~vr~~a~~~l~~l~~~~~------~~--~~~~~~~~~l~~~~~d~~~~vr~~~  273 (521)
                           .+.+             .+++.+.-..-...+..+++...      ++  ......+.++..+...++..+-..+
T Consensus       292 ~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~~lIe~~p~~~~~l~~~l~~ll~~s~~~d~ei~kit  371 (1073)
T 3gjx_A          292 TMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHGQLLEKRLNLREALMEALHYMLLVSEVEETEIFKIC  371 (1073)
T ss_dssp             HHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCSCHHHHHHH
T ss_pred             HHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence                 1111             23333333333334443333221      11  1122233344555555555554444


Q ss_pred             HHHHHccccccC----------------------h-----HHHHHhHHHHHHHhhcCCC--------------------h
Q 009975          274 ASVIMGMAPLLG----------------------K-----DATIEQLLPIFLSLLKDEF--------------------P  306 (521)
Q Consensus       274 ~~~l~~i~~~~~----------------------~-----~~~~~~l~~~l~~~l~d~~--------------------~  306 (521)
                      ......+...+-                      .     ....+.+...+...+.-++                    .
T Consensus       372 f~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge~~re~~~d~~  451 (1073)
T 3gjx_A          372 LEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQGEVVREFMKDTD  451 (1073)
T ss_dssp             HHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHHHHHHHHHHTCCCSCCEEEEECSSSCEEEEECSSCH
T ss_pred             HHHHHHHHHHHHhhccccccccccccccccccchhHHHHHHHHHHHHHHHHHHhcCCCccccccCcccchHHHHHHhhcc
Confidence            444333322110                      0     0112233333333333111                    0


Q ss_pred             --HHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHhc--CCChHHHHHHHHHhHHHHhhhCh---hhhHHHHHHHHHHHc
Q 009975          307 --DVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAE--DRHWRVRLAIIEYIPLLASQLGV---GFFDDKLGALCMQWL  379 (521)
Q Consensus       307 --~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l  379 (521)
                        ..++..-.++.. ...++.+.....+.+.+.+...  ..+|..+.+++.+++.++..+.+   +.+.+.+++.+..+.
T Consensus       452 ~~~ly~~mrd~L~~-lt~l~~~~~~~i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~  530 (1073)
T 3gjx_A          452 SINLYKNMRETLVY-LTHLDYVDTEIIMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLC  530 (1073)
T ss_dssp             HHHHHHHHHHHHHH-HHHHCHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhccc
Confidence              112222223322 2234444444566666665443  35799999999999999887764   255677778777776


Q ss_pred             CCC-----cHHHHHHHHHHHHHHHHHhCHH-HHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChHH---------
Q 009975          380 QDK-----VYSIRDAAANNLKRLAEEFGPE-WAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI---------  444 (521)
Q Consensus       380 ~d~-----~~~vr~~a~~~l~~l~~~~~~~-~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~---------  444 (521)
                      ..+     ...++...+..+|...+-+... .+.+.++..+.+.+.+++..++.+|+.++..++..++...         
T Consensus       531 e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~  610 (1073)
T 3gjx_A          531 EQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVM  610 (1073)
T ss_dssp             HHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSS
T ss_pred             ccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence            433     3445666667888876655332 2456778888888899999999999999999998766543         


Q ss_pred             -HhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchH
Q 009975          445 -TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS  482 (521)
Q Consensus       445 -~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~  482 (521)
                       +.+.++..+.....+=.+.-.....++++.++...+.+
T Consensus       611 p~i~~il~~~~~~~~~l~~~~~~~lyeav~~vi~~~p~~  649 (1073)
T 3gjx_A          611 PFIDEILNNINTIICDLQPQQVHTFYEAVGYMIGAQTDQ  649 (1073)
T ss_dssp             CHHHHHHTSHHHHHTTCCHHHHHHHHHHHHHHHTTCCCH
T ss_pred             hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCc
Confidence             33444444444455555666667888888888877653

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=99.16  E-value=6.2e-08  Score=76.52  Aligned_cols=215  Identities=17%  Similarity=0.178  Sum_probs=134.7

Q ss_pred             HHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcChhhhhhh
Q 009975           96 TELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAH  175 (521)
Q Consensus        96 ~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~  175 (521)
                      ++++..+..++.|+-|.||+.|...+..+++..+ +.+.+.+-.++.-+..++.-..-....+.+|.++..-+  +....
T Consensus        31 ~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~-el~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~P--e~v~~  107 (253)
T 2db0_A           31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKTRE-DLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKP--ELVKS  107 (253)
T ss_dssp             HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCG-GGHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCH--HHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhH-HHHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCH--HHHHh
Confidence            4566667777777788888888888888876554 23333333333333455555555555677777766532  24455


Q ss_pred             hHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhhh
Q 009975          176 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHIL  255 (521)
Q Consensus       176 l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~  255 (521)
                      ++|.+..-..-.++++|-....++++|++.-+.-  ...+..-+..++.+++..=|.+|++.++.+++...  .+....+
T Consensus       108 vVp~lfanyrigd~kikIn~~yaLeeIaranP~l--~~~v~rdi~smltskd~~Dkl~aLnFi~alGen~~--~yv~PfL  183 (253)
T 2db0_A          108 MIPVLFANYRIGDEKTKINVSYALEEIAKANPML--MASIVRDFMSMLSSKNREDKLTALNFIEAMGENSF--KYVNPFL  183 (253)
T ss_dssp             HHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHH--HHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTTH--HHHGGGH
T ss_pred             hHHHHHHHHhcCCccceecHHHHHHHHHHhChHH--HHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccCc--cccCcch
Confidence            6677766666667788888888888887642211  12233444556677777777777766666555321  2334566


Q ss_pred             HHHHHhccCCcHHHHHHHHHHHHccccccChHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhh
Q 009975          256 PCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVN  320 (521)
Q Consensus       256 ~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~  320 (521)
                      |-+..++.|.+.-||.+++++++.++..-++   ...++...+.-++|.+..|.....++++.+.
T Consensus       184 prL~aLL~D~deiVRaSaVEtL~~lA~~npk---lRkii~~kl~e~~D~S~lv~~~V~egL~rl~  245 (253)
T 2db0_A          184 PRIINLLHDGDEIVRASAVEALVHLATLNDK---LRKVVIKRLEELNDTSSLVNKTVKEGISRLL  245 (253)
T ss_dssp             HHHHGGGGCSSHHHHHHHHHHHHHHHTSCHH---HHHHHHHHHHHCCCSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCcchhhhHHHHHHHHHHHHcCHH---HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence            7777778888888888888888877754433   2334444455567777777777777777654

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=99.14  E-value=5.8e-10  Score=103.93  Aligned_cols=256  Identities=11%  Similarity=0.056  Sum_probs=170.9

Q ss_pred             hHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccChHHHHHhHH
Q 009975          215 LVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL  294 (521)
Q Consensus       215 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~  294 (521)
                      +...+..-+-|+.|++|.+|+-+|.++....|...-  ..      -..+.+-.+|..++-++.++.+..++..      
T Consensus       175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAG--R~------~~~N~DLAvRLLCVLALDRFGDYVSDqV------  240 (800)
T 3oc3_A          175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGD--IQ------IRVDSKLFSKIYEILVTDKFNDFVDDRT------  240 (800)
T ss_dssp             TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC------CC------CCCCTTHHHHHHHHHHHBCCBBCSSSSC------
T ss_pred             HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCc--ee------ccccHHHHHHHHHHHHhccccccccCee------
Confidence            677777778889999999999999998887764211  01      1122355677777777777776655422      


Q ss_pred             HHHHHhhcCCChHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChhhhHHHHHHH
Q 009975          295 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGAL  374 (521)
Q Consensus       295 ~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~  374 (521)
                                -..||+.++++|+.+ ..+..+   ..++..+......+.|.+|-..+-.+-.+...+..   .+.++|.
T Consensus       241 ----------VAPVRETaAQtLGaL-~hLp~e---~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~DLL~~---Ld~Vv~a  303 (800)
T 3oc3_A          241 ----------VAPVRDAAAYLLSRI-YPLIGP---NDIIEQLVGFLDSGDWQVQFSGLIALGYLKEFVED---KDGLCRK  303 (800)
T ss_dssp             ----------BCHHHHHHHHHHHHH-TTTSCS---CCHHHHHTTGGGCSCHHHHHHHHHHHHHTGGGCCC---HHHHHHH
T ss_pred             ----------eeehHHHHHHHHHHH-HhCChh---HHHHHHHHhhcCCCCeeehhhhHHHHHHHHHHHHH---HHHHHHH
Confidence                      257999999999998 777655   23444444455778899999887777766222222   5778999


Q ss_pred             HHHHcCCCcHHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcC--cchHHHHHHHHHHHHhhcccChHHHhhcHHHH
Q 009975          375 CMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINN--PHYLYRMTILRAISLLAPVMGSEITCSRLLPV  452 (521)
Q Consensus       375 l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~--~~~~~r~~a~~~l~~l~~~~~~~~~~~~il~~  452 (521)
                      ++..|+|.+.+||..|+.+|-.++   .++. ...++..+.+.+.+  .-..--...+..++.+...-......+.++|.
T Consensus       304 VL~GL~D~DDDVRAVAAetLiPIA---~p~~-l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a~~dp~LVPR  379 (800)
T 3oc3_A          304 LVSLLSSPDEDIKLLSAELLCHFP---ITDS-LDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPELSIPPERLKD  379 (800)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHTTSC---CSST-HHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTCCCCSGGGGG
T ss_pred             HHhhcCCcccHHHHHHHHHhhhhc---chhh-HHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcccccChHHHHH
Confidence            999999999999999999988777   2111 22333334333322  11112233444555544322111122488999


Q ss_pred             HHhhcCCCCchHHHHHHHHHHHHHhhhchHHHHhhHHHHHHHhcCCCCccHHHHHHHHHH
Q 009975          453 VINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQ  512 (521)
Q Consensus       453 l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~~~~~~~~l~~l~~D~~~~vr~~a~~al~  512 (521)
                      ++..+.++.+.||.++++++..+..       ...+.-..++++-+++.+|+..+.+++.
T Consensus       380 L~PFLRHtITSVR~AVL~TL~tfL~-------~~~LRLIFQNILLE~neeIl~lS~~VWk  432 (800)
T 3oc3_A          380 IFPCFTSPVPEVRTSILNMVKNLSE-------ESIDFLVAEVVLIEEKDEIREMAIKLLK  432 (800)
T ss_dssp             TGGGGTCSSHHHHHHHHHHTTTCCC-------HHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred             HHhhhcCCcHHHHHHHHHHHHHHHh-------hhHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence            9999999999999999999987771       1233334556788899999999998885

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.14  E-value=9.5e-09  Score=92.63  Aligned_cols=187  Identities=11%  Similarity=0.066  Sum_probs=140.2

Q ss_pred             hHHHHHHHhhcCCC------------hHHHHHHHHHHHHhhhhhch--hhHhhhHHHHHHH-HhcCCChHHHHHHHHHhH
Q 009975          292 QLLPIFLSLLKDEF------------PDVRLNIISKLDQVNQVIGI--DLLSQSLLPAIVE-LAEDRHWRVRLAIIEYIP  356 (521)
Q Consensus       292 ~l~~~l~~~l~d~~------------~~vr~~a~~~l~~~~~~~~~--~~~~~~~~~~l~~-~~~~~~~~vr~~~~~~l~  356 (521)
                      +.++..+..+.++.            .+-|..|+..|..++.....  .......+|.+.. ++.+++..+|..++.+++
T Consensus        28 ~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg  107 (296)
T 1xqr_A           28 EQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIG  107 (296)
T ss_dssp             HHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            44566666666652            24677788888887765432  1222356788888 999999999999999999


Q ss_pred             HHHhhhCh---hhhHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHHHHhCH---HHHHhhhHHHHHhhhcCcchHHHHHH
Q 009975          357 LLASQLGV---GFFDDKLGALCMQWLQ-DKVYSIRDAAANNLKRLAEEFGP---EWAMQHITPQVLEMINNPHYLYRMTI  429 (521)
Q Consensus       357 ~l~~~~~~---~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~~~~~~~r~~a  429 (521)
                      .++..-+.   .......+|.++.+++ +++..+|..|+.+|+.++.....   .+.....+|.|..++.+++..+|..+
T Consensus       108 ~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A  187 (296)
T 1xqr_A          108 TCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKS  187 (296)
T ss_dssp             HHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHH
T ss_pred             HHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHH
Confidence            99864321   1223346788888887 56889999999999999854322   22345688999999999999999999


Q ss_pred             HHHHHHhhcccCh---HHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhh
Q 009975          430 LRAISLLAPVMGS---EITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPI  478 (521)
Q Consensus       430 ~~~l~~l~~~~~~---~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~  478 (521)
                      +++++.++..-..   ......++|.++.++.++++.||..++.+|+.+...
T Consensus       188 ~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~  239 (296)
T 1xqr_A          188 AFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTD  239 (296)
T ss_dssp             HHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence            9999999865221   223467899999999999999999999999999876

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=99.13  E-value=1.7e-09  Score=97.79  Aligned_cols=181  Identities=17%  Similarity=0.165  Sum_probs=112.9

Q ss_pred             HHHHhcCCChHHHHHHHHHhHHHHhhhChhhhH-------HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHH----
Q 009975          336 IVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD-------DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE----  404 (521)
Q Consensus       336 l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~-------~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~----  404 (521)
                      +.+-+.+++|..|..+++.+..+....+.....       ..+.+.+...+.|.|..|...++.++..++..++..    
T Consensus        14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~   93 (278)
T 4ffb_C           14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN   93 (278)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred             HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence            445667777888877777776665543322111       113455566777888888887777777777655432    


Q ss_pred             ----HHHhhhHHHHHh-hhcCcchHHHHHHHHHHHHhhcccChHHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhh
Q 009975          405 ----WAMQHITPQVLE-MINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIV  479 (521)
Q Consensus       405 ----~~~~~l~~~l~~-~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~  479 (521)
                          .....++|.+.+ .+.+++..+|..+..++..++...+.   ...+++.+...+++.+|.+|..++..|..+...+
T Consensus        94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~---~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~f  170 (278)
T 4ffb_C           94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTS---ITQSVELVIPFFEKKLPKLIAAAANCVYELMAAF  170 (278)
T ss_dssp             HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSS---SHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCc---HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHh
Confidence                122445666654 36777777777777777766653332   1334566677777778888888888887777766


Q ss_pred             chHH-----HHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHHhhc
Q 009975          480 DQSM-----VEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMM  519 (521)
Q Consensus       480 ~~~~-----~~~~~~~~l~~l~~D~~~~vr~~a~~al~~l~~~~~  519 (521)
                      |...     ....+++.+.++++|+|++||..|..++..+...+|
T Consensus       171 g~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G  215 (278)
T 4ffb_C          171 GLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTG  215 (278)
T ss_dssp             TTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC--
T ss_pred             CCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhC
Confidence            5432     223455566667778888888888888777776665

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=99.12  E-value=9.7e-10  Score=100.51  Aligned_cols=280  Identities=12%  Similarity=0.030  Sum_probs=119.0

Q ss_pred             hhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhh
Q 009975          175 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHI  254 (521)
Q Consensus       175 ~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~  254 (521)
                      .+++-+.+++.+++...|+.+.-.+..+++. .++..  -+.+.+.+-++|+++-+|-.|+.+++.+...    ...+.+
T Consensus        68 ~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~-~~e~i--Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~----~m~~~l  140 (355)
T 3tjz_B           68 EAFFAMTKLFQSNDPTLRRMCYLTIKEMSCI-AEDVI--IVTSSLTKDMTGKEDSYRGPAVRALCQITDS----TMLQAI  140 (355)
T ss_dssp             HHHHHHHGGGGCCCHHHHHHHHHHHHHHTTT-SSCGG--GGHHHHHHHHHSSCHHHHHHHHHHHHHHCCT----TTHHHH
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC-HHHHH--HHHHHHHhhcCCCcHhHHHHHHHHHhcCCCH----HHHHHH
Confidence            4555566667777777777766666655543 22221  4566666667777777777777777766441    234556


Q ss_pred             hHHHHHhccCCcHHHHHHHHHHHHccccccChHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchhhHhhhHHH
Q 009975          255 LPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLP  334 (521)
Q Consensus       255 ~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~  334 (521)
                      .+.+++.+.|+++.||..|+-+...+.+..++  ..+.+++.+..++.|.++.|...|+..+..+...- ...+ ..+++
T Consensus       141 ~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe--~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d-~~a~-~kLv~  216 (355)
T 3tjz_B          141 ERYMKQAIVDKVPSVSSSALVSSLHLLKCSFD--VVKRWVNEAQEAASSDNIMVQYHALGLLYHVRKND-RLAV-SKMIS  216 (355)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHH--HHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTC-HHHH-HHHHH
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHhccCHH--HHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhc-hHHH-HHHHH
Confidence            77777777777777777777777666544333  23456777777777888877777777777765421 1111 22233


Q ss_pred             HHHHHhcCCChHHHHHHHHHhHHHHhhhChhhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHHHHHhhhHHHH
Q 009975          335 AIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQV  414 (521)
Q Consensus       335 ~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l  414 (521)
                      .+.+. .-.++......++.+..+...- .+.....+.+.+..+++..++.|.-.|++++-.+.. .+.. ........+
T Consensus       217 ~l~~~-~l~~~~~q~~llr~l~~~~~~d-~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~-~~~~-~~~~a~~~L  292 (355)
T 3tjz_B          217 KFTRH-GLKSPFAYCMMIRVASRQLEDE-DGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPG-CSAK-ELAPAVSVL  292 (355)
T ss_dssp             HHHSS-CCSCHHHHHHHHHHHTCC------------------CCCCCSSHHHHHHHHHHHTC-------------CCCTH
T ss_pred             HHhcC-CCcChHHHHHHHHHHHHhcccc-chhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccC-CCHH-HHHHHHHHH
Confidence            22210 0112222222232222221110 011223455555555666666665555555444322 1110 111222333


Q ss_pred             HhhhcCcchHHHHHHHHHHHHhhcccChHHHhhcHHHHHHhhcCCCCchHHHHHHHH
Q 009975          415 LEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKV  471 (521)
Q Consensus       415 ~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~VR~~a~~~  471 (521)
                      ..++.+++..+|..++..+..+....+.  .....-..+..+++|++..++.-|+.+
T Consensus       293 ~~fLss~d~niryvaLr~L~~l~~~~P~--~v~~~n~~ie~li~d~n~sI~t~Aitt  347 (355)
T 3tjz_B          293 QLFCSSPKAALRYAAVRTLNKVAMKHPS--AVTACNLDLENLVTDANRSIATLAITT  347 (355)
T ss_dssp             HHHHHSSSSSSHHHHHHCC--------------------------------------
T ss_pred             HHHHcCCCchHHHHHHHHHHHHHHHCcH--HHHHHHHHHHHHccCCcHhHHHHHHHH
Confidence            3344444455555555555554442221  112223334444555554444444433

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=99.10  E-value=2.9e-09  Score=97.37  Aligned_cols=289  Identities=14%  Similarity=0.043  Sum_probs=165.8

Q ss_pred             CCChHHHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcC
Q 009975           89 SAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLE  168 (521)
Q Consensus        89 ~~~~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~  168 (521)
                      .++......++.-+.++.++++...|+-.--.+..+++. .++ .. .....+.+=++++++.+|..|+++++.+...  
T Consensus        60 ~f~~~e~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~-~~e-~i-Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~--  134 (355)
T 3tjz_B           60 HLGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCI-AED-VI-IVTSSLTKDMTGKEDSYRGPAVRALCQITDS--  134 (355)
T ss_dssp             CCCHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTT-SSC-GG-GGHHHHHHHHHSSCHHHHHHHHHHHHHHCCT--
T ss_pred             CCchhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC-HHH-HH-HHHHHHHhhcCCCcHhHHHHHHHHHhcCCCH--
Confidence            344444567888888899999999999988888887765 322 22 5667777777889999999999999988643  


Q ss_pred             hhhhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHH
Q 009975          169 PQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE  248 (521)
Q Consensus       169 ~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~  248 (521)
                        +..+.+.+.+.+.+.|.++.||+.|+-+...+.... ++. ...+++.+.+++.|.++.|...|+..+..+... ++.
T Consensus       135 --~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~-pe~-v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~-d~~  209 (355)
T 3tjz_B          135 --TMLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCS-FDV-VKRWVNEAQEAASSDNIMVQYHALGLLYHVRKN-DRL  209 (355)
T ss_dssp             --TTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTC-HHH-HHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTT-CHH
T ss_pred             --HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccC-HHH-HHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhh-chH
Confidence              366788999999999999999999999877665321 222 245788888899999999999998888888763 222


Q ss_pred             HHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccChHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchhhH
Q 009975          249 LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL  328 (521)
Q Consensus       249 ~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~  328 (521)
                       ...++++.+... .-.++...-..++.+..+++.- .....+.+.+.+...++..++.|...|+.++..+.. .+...+
T Consensus       210 -a~~kLv~~l~~~-~l~~~~~q~~llr~l~~~~~~d-~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~-~~~~~~  285 (355)
T 3tjz_B          210 -AVSKMISKFTRH-GLKSPFAYCMMIRVASRQLEDE-DGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPG-CSAKEL  285 (355)
T ss_dssp             -HHHHHHHHHHSS-CCSCHHHHHHHHHHHTCC------------------CCCCCSSHHHHHHHHHHHTC----------
T ss_pred             -HHHHHHHHHhcC-CCcChHHHHHHHHHHHHhcccc-chhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccC-CCHHHH
Confidence             223444444331 1224444444555554443311 012346788899999999999999999999988755 222222


Q ss_pred             hhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChhhhHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q 009975          329 SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNL  394 (521)
Q Consensus       329 ~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l  394 (521)
                       ......+..++.+++..+|..++..+..+....+..  ......-+..+++|+|..++.-|+..|
T Consensus       286 -~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~~--v~~~n~~ie~li~d~n~sI~t~Aittl  348 (355)
T 3tjz_B          286 -APAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSA--VTACNLDLENLVTDANRSIATLAITTL  348 (355)
T ss_dssp             ---CCCTHHHHHHSSSSSSHHHHHHCC---------------------------------------
T ss_pred             -HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcHH--HHHHHHHHHHHccCCcHhHHHHHHHHh
Confidence             344556667778888899999999999888765432  223445567888999988877766554

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=99.10  E-value=8.6e-09  Score=89.67  Aligned_cols=179  Identities=14%  Similarity=0.179  Sum_probs=130.6

Q ss_pred             HHhcCCChHHHHHHHHHhHHHHHhhhCHHHHH---HhhhHHHHHhccCCcHHHHHHHHHHHHccccccChH------HHH
Q 009975          220 VRLLRDNEAEVRIAAAGKVTKFCRILNPELAI---QHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD------ATI  290 (521)
Q Consensus       220 ~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~---~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~------~~~  290 (521)
                      ...+-+.++.-|..++..|....... ++...   +.++..+.-.+.|+|..|-..+++.+..+...++..      ...
T Consensus        52 ~~~lfs~d~k~~~~ale~L~~~l~~~-~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea  130 (266)
T 2of3_A           52 MSQLFHKDFKQHLAALDSLVRLADTS-PRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEV  130 (266)
T ss_dssp             HHHHTCSCHHHHHHHHHHHHHHHHHC-HHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHhhhC-hHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHH
Confidence            33344445666666666666654432 22211   223444443445788888888888888776555332      113


Q ss_pred             HhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChhhhHHH
Q 009975          291 EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDK  370 (521)
Q Consensus       291 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~  370 (521)
                      ..++|.+..-+.|+.+.||..+...+..+....++    ..+.+.+.+.++++||++|..++..+..+....|...  ..
T Consensus       131 ~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~----~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~~--~~  204 (266)
T 2of3_A          131 SAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP----LKMTPMLLDALKSKNARQRSECLLVIEYYITNAGISP--LK  204 (266)
T ss_dssp             HHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH----HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSGG--GG
T ss_pred             HHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCH----HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCCc--cc
Confidence            56899999999999999999999988888776665    3467777778899999999999999999999988763  33


Q ss_pred             HH---HHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHHH
Q 009975          371 LG---ALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW  405 (521)
Q Consensus       371 l~---~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~  405 (521)
                      .+   |.+..++.|++..||.+|+.++..+....|...
T Consensus       205 ~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~v  242 (266)
T 2of3_A          205 SLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQM  242 (266)
T ss_dssp             GGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTHH
T ss_pred             cccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHH
Confidence            56   888899999999999999999999998888653

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=99.09  E-value=4e-08  Score=81.26  Aligned_cols=217  Identities=13%  Similarity=0.100  Sum_probs=168.0

Q ss_pred             HHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCc---hhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcCh-hhh
Q 009975           97 ELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP---AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP-QDC  172 (521)
Q Consensus        97 ~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~-~~~  172 (521)
                      ..+..+.+++.++|+.++..+..+|+.+.+..+.   ....+.++|-+..++.++++.+...|+++++.+.+..+- +..
T Consensus        33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~  112 (265)
T 3b2a_A           33 RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKT  112 (265)
T ss_dssp             HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHH
T ss_pred             hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHH
Confidence            4667888889999999999999999999998654   345678899999999999999999999999999998764 345


Q ss_pred             hhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHH
Q 009975          173 VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQ  252 (521)
Q Consensus       173 ~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~  252 (521)
                      ...+...+.....+++...+..+++.++.+    ........+..++.+++.+.+..++.+++.++..++...+.....+
T Consensus       113 y~Kl~~aL~dlik~~~~il~~eaae~Lgkl----kv~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~i~~  188 (265)
T 3b2a_A          113 FLKAAKTLVSLLESPDDMMRIETIDVLSKL----QPLEDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSGHLT  188 (265)
T ss_dssp             HHHHHHHHHHHTTSCCHHHHHHHHHHHHHC----CBSCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCCCGG
T ss_pred             HHHHHHHHHHHhcCCCchHHHHHHHHhCcC----CcccchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCHHHHH
Confidence            566888888999999999999999999977    3333346789999999999999999999999999998776545556


Q ss_pred             hhhHHHHHhccCCcHHHHHHHHHHHHccccccChHHHHH---hHHHHHHHhh-cCCChHHHHHHHHHHH
Q 009975          253 HILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIE---QLLPIFLSLL-KDEFPDVRLNIISKLD  317 (521)
Q Consensus       253 ~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~---~l~~~l~~~l-~d~~~~vr~~a~~~l~  317 (521)
                      .++.-+..+++.+++.++.-+...+-.+...--.+....   .+....-++. -...|.+|..|-....
T Consensus       189 ~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~~~~~~~v~~l~~~~~~~~~~~ka~~v~~  257 (265)
T 3b2a_A          189 LILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIELLKISRIVDGLVYREGAPIIRLKAKKVSD  257 (265)
T ss_dssp             GTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHGGGCSSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHH
Confidence            777888888898999999999998888765422221122   2222333333 3455667766644433

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.08  E-value=9.8e-09  Score=92.52  Aligned_cols=172  Identities=17%  Similarity=0.140  Sum_probs=131.3

Q ss_pred             HHHHHHHHHhHHHHhhhChh--hhHHHHHHHHHH-HcCCCcHHHHHHHHHHHHHHHHHhC---HHHHHhhhHHHHHhhhc
Q 009975          346 RVRLAIIEYIPLLASQLGVG--FFDDKLGALCMQ-WLQDKVYSIRDAAANNLKRLAEEFG---PEWAMQHITPQVLEMIN  419 (521)
Q Consensus       346 ~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~-~l~d~~~~vr~~a~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~  419 (521)
                      ..|..++..|..+++.....  ......+|.++. +++++++.||..|+.+++.++....   ........+|.|..++.
T Consensus        55 e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~  134 (296)
T 1xqr_A           55 QEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLD  134 (296)
T ss_dssp             HHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHc
Confidence            45666777777777654321  222335788888 9999999999999999999985321   12234567889998887


Q ss_pred             -CcchHHHHHHHHHHHHhhcccCh---HHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhch---HHHHhhHHHHH
Q 009975          420 -NPHYLYRMTILRAISLLAPVMGS---EITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ---SMVEKTIRPCL  492 (521)
Q Consensus       420 -~~~~~~r~~a~~~l~~l~~~~~~---~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~---~~~~~~~~~~l  492 (521)
                       +++..+|..|+++++.++.....   .+.....+|.+..++.+++..+|..|+++|+.++.....   .....-++|.|
T Consensus       135 ~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~L  214 (296)
T 1xqr_A          135 RDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQL  214 (296)
T ss_dssp             HCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHH
Confidence             45889999999999999864332   223356899999999999999999999999999875221   23346688999


Q ss_pred             HHhcCCCCccHHHHHHHHHHHHHHh
Q 009975          493 VELTEDPDVDVRFFATQAIQSIDHV  517 (521)
Q Consensus       493 ~~l~~D~~~~vr~~a~~al~~l~~~  517 (521)
                      ..++.+++.+||..|..++..|...
T Consensus       215 v~LL~~~d~~v~~~al~aL~~l~~~  239 (296)
T 1xqr_A          215 VALVRTEHSPFHEHVLGALCSLVTD  239 (296)
T ss_dssp             HHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred             HHHHcCCChhHHHHHHHHHHHHHhC
Confidence            9999999999999999999998754

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=99.07  E-value=2.5e-08  Score=82.49  Aligned_cols=222  Identities=14%  Similarity=0.118  Sum_probs=172.4

Q ss_pred             HhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhh----chhhHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChh-
Q 009975          291 EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI----GIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG-  365 (521)
Q Consensus       291 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~-  365 (521)
                      +..+..+..+++|.++.++..++.+++.+.+..    ....+ +.++|.+.++..+++.++-..+++++..+....+.. 
T Consensus        32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~-e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~  110 (265)
T 3b2a_A           32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVL-ERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGS  110 (265)
T ss_dssp             HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCH
T ss_pred             hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHH-HHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCH
Confidence            346778888999999999999999999998874    22223 788999999999999999999999999999886542 


Q ss_pred             hhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChHHH
Q 009975          366 FFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEIT  445 (521)
Q Consensus       366 ~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~  445 (521)
                      .....+...+...+++++.-++.-+++.++.+ +...   ....+...+..++.++|.+++.+++.++..++..-++...
T Consensus       111 ~~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl-kv~~---~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~i  186 (265)
T 3b2a_A          111 KTFLKAAKTLVSLLESPDDMMRIETIDVLSKL-QPLE---DSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSGH  186 (265)
T ss_dssp             HHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC-CBSC---CCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCCC
T ss_pred             HHHHHHHHHHHHHhcCCCchHHHHHHHHhCcC-Cccc---chHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCHHH
Confidence            22356788888999999999999999999888 3222   2345777788888999999999999999999987776666


Q ss_pred             hhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchHHHH---hhHHHHHHHhc-CCCCccHHHHHHHHHHHHHHh
Q 009975          446 CSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVE---KTIRPCLVELT-EDPDVDVRFFATQAIQSIDHV  517 (521)
Q Consensus       446 ~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~~---~~~~~~l~~l~-~D~~~~vr~~a~~al~~l~~~  517 (521)
                      .+.+..-+-.+++.+++.++..|+.++..+...--.+...   ..+...+.++. .-.-+.+|..|...-..+..-
T Consensus       187 ~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~~~~~~~v~~l~~~~~~~~~~~ka~~v~~~le~~  262 (265)
T 3b2a_A          187 LTLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIELLKISRIVDGLVYREGAPIIRLKAKKVSDLIDSV  262 (265)
T ss_dssp             GGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHGGGCSSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHh
Confidence            7777777888888899999999999999987642111111   34455556666 677888888888777666543

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}

Probab=99.03  E-value=7.4e-07  Score=96.80  Aligned_cols=447  Identities=11%  Similarity=-0.011  Sum_probs=242.7

Q ss_pred             cCchhHHHHHHHHHHHHHHhh----cChh---HHHHhHHHHHHHhhc---CCCCcchhhhhhhhhhhcCCCChHHHHHHH
Q 009975           30 TVEETCVRDKAVESLCRIGSQ----MRES---DLVDWYIPLVKRLAA---GEWFTARVSACGLFHIAYPSAPDILKTELR   99 (521)
Q Consensus        30 ~~~~~~vR~~a~~~l~~i~~~----~~~~---~~~~~l~p~i~~~~~---~~~~~~r~~~~~~~~~~~~~~~~~~~~~l~   99 (521)
                      .+.+..+|..|...|...+..    ++++   .+++.++..+.+...   +....+|...+.++..++.+.-+..+..++
T Consensus        57 ~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~Wp~ll  136 (1204)
T 3a6p_A           57 KTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHWPDML  136 (1204)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTCTTHH
T ss_pred             cCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcccchHHH
Confidence            456789999999888877654    4543   455666666554322   134556666666666555432122366777


Q ss_pred             HHHHHhcCCCChHHHHHHHHhHHHHHHhhCc-----h-----------hhHHHHHHHHHHhhcC----------------
Q 009975          100 SIYTQLCQDDMPMVRRSAASNLGKFAATVEP-----A-----------HLKTDIMSIFEDLTQD----------------  147 (521)
Q Consensus       100 ~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~-----~-----------~~~~~l~~~l~~l~~d----------------  147 (521)
                      +.+.++++. ++..+..+...|..+.+....     .           ...+.+++.+.+.+.+                
T Consensus       137 ~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~  215 (1204)
T 3a6p_A          137 IELDTLSKQ-GETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQES  215 (1204)
T ss_dssp             HHHHHHHHT-CHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHH
T ss_pred             HHHHHHhcC-CHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchh
Confidence            777776654 566788888888888765221     0           0112445555544432                


Q ss_pred             ---CChhHHHHHHHHHHHHhhhcChhhhh---hhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCC-Cc---cccch--
Q 009975          148 ---DQDSVRLLAVEGCAALGKLLEPQDCV---AHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP-EP---TRMDL--  215 (521)
Q Consensus       148 ---~~~~vr~~a~~~l~~l~~~~~~~~~~---~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~-~~---~~~~l--  215 (521)
                         ++..++..+++++.....-++.....   ..+++.+..++.+  +.+|..|+++|..++..... +.   ....+  
T Consensus       216 ~~~~~~~l~~~aL~~l~~~l~Wi~~~~i~~~~~~ll~~l~~~l~~--~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~  293 (1204)
T 3a6p_A          216 KAQANCRVGVAALNTLAGYIDWVSMSHITAENCKLLEILCLLLNE--QELQLGAAECLLIAVSRKGKLEDRKPLMVLFGD  293 (1204)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTTTSCHHHHHTTTSHHHHHHHHGGGC--TTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSH
T ss_pred             hhhhhHHHHHHHHHHHHHHHhccCHHHHHhccchHHHHHHHHcCC--HHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhh
Confidence               12345666666666555544433221   2477877777764  56899999999998863221 10   00111  


Q ss_pred             --HHHHHHhc--------CCChHHHHHHHHHhHHHHHhhhCH----------HHHHHhhhHHHHHhccCCcHHHHHHHHH
Q 009975          216 --VPAYVRLL--------RDNEAEVRIAAAGKVTKFCRILNP----------ELAIQHILPCVKELSSDSSQHVRSALAS  275 (521)
Q Consensus       216 --~~~l~~~l--------~d~~~~vr~~a~~~l~~l~~~~~~----------~~~~~~~~~~l~~~~~d~~~~vr~~~~~  275 (521)
                        +..+.+..        .|++.++++...+.+..++..+..          ......+++.+..+..+++..+-..++.
T Consensus       294 ~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~~ll~~lg~~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~  373 (1204)
T 3a6p_A          294 VAMHYILSAAQTADGGGLVEKHYVFLKRLCQVLCALGNQLCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQM  373 (1204)
T ss_dssp             HHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred             HHHHHHHHHhhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHH
Confidence              11222222        233456666666666655532211          1123467888888888888888777776


Q ss_pred             HHHcccccc--Ch-HH---HHHhHHHHHHH---hhc---CCC---------------------hHHHHHHHHHHHHhhhh
Q 009975          276 VIMGMAPLL--GK-DA---TIEQLLPIFLS---LLK---DEF---------------------PDVRLNIISKLDQVNQV  322 (521)
Q Consensus       276 ~l~~i~~~~--~~-~~---~~~~l~~~l~~---~l~---d~~---------------------~~vr~~a~~~l~~~~~~  322 (521)
                      ....+.+..  +. +.   ....+++.+..   -++   +.+                     .+.|+.....+..++..
T Consensus       374 fW~~ll~~~~~~~~~~~~~~l~~Ll~vl~~~l~k~~yp~~~~~~~~~~~~~D~d~~~E~~~~f~~~Rk~~~d~l~~i~~v  453 (1204)
T 3a6p_A          374 TWGALFRHEILSRDPLLLAIIPKYLRASMTNLVKMGFPSKTDSPSCEYSRFDFDSDEDFNAFFNSSRAQQGEVMRLACRL  453 (1204)
T ss_dssp             HHHHHHSCTTTTTCHHHHHHHHHHHHHHHHHHSCCCCSSCCSSTHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHhcCccccCCcchhhhhcccCCcHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            666554432  12 11   23344444422   111   100                     12355555555555443


Q ss_pred             hchhhHhhhHHHHHHHHhc-------------------------CCChHHHHHHHHHhHHHHhhh---C-hhhhHHHHHH
Q 009975          323 IGIDLLSQSLLPAIVELAE-------------------------DRHWRVRLAIIEYIPLLASQL---G-VGFFDDKLGA  373 (521)
Q Consensus       323 ~~~~~~~~~~~~~l~~~~~-------------------------~~~~~vr~~~~~~l~~l~~~~---~-~~~~~~~l~~  373 (521)
                      .+...+ ..+.+.+.+.+.                         ++.|....+....+..+.+.+   . .+.....+.|
T Consensus       454 ~p~~~l-~~v~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ea~~~~leav~~~~~~~~e~~~l~~~~~~  532 (1204)
T 3a6p_A          454 DPKTSF-QMAGEWLKYQLSTFLDAGSVNSCSAVGTGEGSLCSVFSPSFVQWEAMTLFLESVITQMFRTLNREEIPVNDGI  532 (1204)
T ss_dssp             CHHHHH-HHHHHHHHHHHTCC-----------------CCSCSSSHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCHHHHH
T ss_pred             CHHHHH-HHHHHHHHHHHhhhhcccccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHHhcccccccccHHHHH
Confidence            332222 444455544322                         223455556555565555544   1 1111112334


Q ss_pred             HHHHH-c--CCCcHHHHHHHHHHHHHHHHHhCHH-HHHhhhHHHHHhhhcC------------cchHHHHHHHHHHHHhh
Q 009975          374 LCMQW-L--QDKVYSIRDAAANNLKRLAEEFGPE-WAMQHITPQVLEMINN------------PHYLYRMTILRAISLLA  437 (521)
Q Consensus       374 ~l~~~-l--~d~~~~vr~~a~~~l~~l~~~~~~~-~~~~~l~~~l~~~l~~------------~~~~~r~~a~~~l~~l~  437 (521)
                      .++.. +  +..++.+|..++.+++.+...+... .+...++..+...+.+            .+..+|.+|+.++..++
T Consensus       533 ~Ll~~ll~~~~~~p~l~~~~i~~l~~l~~~~~~~p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~L~  612 (1204)
T 3a6p_A          533 ELLQMVLNFDTKDPLILSCVLTNVSALFPFVTYRPEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSIIKMC  612 (1204)
T ss_dssp             HHHHHHHHCCCSCHHHHHHHHHHHHHHGGGGGTCGGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCChHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHHHHHHHHH
Confidence            44433 2  3467889999999999887765421 1233444445544433            34589999999999999


Q ss_pred             cccChHH--HhhcHHHHHHhhcCCC---CchHHHHHHHHHHHHHhhhc
Q 009975          438 PVMGSEI--TCSRLLPVVINASKDR---VPNIKFNVAKVLQSLIPIVD  480 (521)
Q Consensus       438 ~~~~~~~--~~~~il~~l~~~l~d~---~~~VR~~a~~~l~~~~~~~~  480 (521)
                      ..++...  +.+.+...+...+...   ...=+.....++..++..++
T Consensus       613 ~~~~~~L~p~~~~i~~~~~~~l~~~~~l~~~e~~~L~eal~~ia~~~~  660 (1204)
T 3a6p_A          613 RDYPQLVLPNFDMLYNHVKQLLSNELLLTQMEKCALMEALVLISNQFK  660 (1204)
T ss_dssp             HHCHHHHGGGHHHHHHHHHHHHHSTTTSCHHHHHHHHHHHHHHHGGGC
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHhccCC
Confidence            8776532  3455555555555422   24445566677777655443

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=99.02  E-value=9.7e-09  Score=95.89  Aligned_cols=255  Identities=12%  Similarity=0.095  Sum_probs=148.4

Q ss_pred             HHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcChhhhhhhhH
Q 009975           98 LRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHIL  177 (521)
Q Consensus        98 l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~  177 (521)
                      +...+..-+-|+.|++|+.|+-+|..+.+..+...-..        -..+.+-.+|..++-++..++.++++.       
T Consensus       175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~--------~~~N~DLAvRLLCVLALDRFGDYVSDq-------  239 (800)
T 3oc3_A          175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQ--------IRVDSKLFSKIYEILVTDKFNDFVDDR-------  239 (800)
T ss_dssp             TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CC--------CCCCTTHHHHHHHHHHHBCCBBCSSSS-------
T ss_pred             HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCcee--------ccccHHHHHHHHHHHHhccccccccCe-------
Confidence            55666666678899999999999999998866311000        001112344444444444333332221       


Q ss_pred             HHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhhhHH
Q 009975          178 PVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPC  257 (521)
Q Consensus       178 ~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~  257 (521)
                               .-..||..++++++.+ ..++++   -.++..++..+..+.|+||.+++-.+.-+...+..   .+.+++.
T Consensus       240 ---------VVAPVRETaAQtLGaL-~hLp~e---~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~DLL~~---Ld~Vv~a  303 (800)
T 3oc3_A          240 ---------TVAPVRDAAAYLLSRI-YPLIGP---NDIIEQLVGFLDSGDWQVQFSGLIALGYLKEFVED---KDGLCRK  303 (800)
T ss_dssp             ---------CBCHHHHHHHHHHHHH-TTTSCS---CCHHHHHTTGGGCSCHHHHHHHHHHHHHTGGGCCC---HHHHHHH
T ss_pred             ---------eeeehHHHHHHHHHHH-HhCChh---HHHHHHHHhhcCCCCeeehhhhHHHHHHHHHHHHH---HHHHHHH
Confidence                     2335888888888877 555555   23444444555677788888887777766443332   4567777


Q ss_pred             HHHhccCCcHHHHHHHHHHHHccccccChHHHHHhHHHHHHHhhcCC--ChHHHHHHHHHHHHhhhhhchhhHhhhHHHH
Q 009975          258 VKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDE--FPDVRLNIISKLDQVNQVIGIDLLSQSLLPA  335 (521)
Q Consensus       258 l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~--~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~  335 (521)
                      +...+.|.+..||..++.++..++  .+  ...+.++..+-.++.+.  -..--...+.-|+.++..-......+.++|.
T Consensus       304 VL~GL~D~DDDVRAVAAetLiPIA--~p--~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a~~dp~LVPR  379 (800)
T 3oc3_A          304 LVSLLSSPDEDIKLLSAELLCHFP--IT--DSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPELSIPPERLKD  379 (800)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHTTSC--CS--STHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTCCCCSGGGGG
T ss_pred             HHhhcCCcccHHHHHHHHHhhhhc--ch--hhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcccccChHHHHH
Confidence            777788888888888888887777  11  11233444443333322  1111222233333333221110111356676


Q ss_pred             HHHHhcCCChHHHHHHHHHhHHHHhhhChhhhHHHHHHH-HHHHcCCCcHHHHHHHHHHHH
Q 009975          336 IVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGAL-CMQWLQDKVYSIRDAAANNLK  395 (521)
Q Consensus       336 l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~-l~~~l~d~~~~vr~~a~~~l~  395 (521)
                      +..++.+.-..||.++++++..+.        ...++.+ +.+.+-+++.+++..+.+.+.
T Consensus       380 L~PFLRHtITSVR~AVL~TL~tfL--------~~~~LRLIFQNILLE~neeIl~lS~~VWk  432 (800)
T 3oc3_A          380 IFPCFTSPVPEVRTSILNMVKNLS--------EESIDFLVAEVVLIEEKDEIREMAIKLLK  432 (800)
T ss_dssp             TGGGGTCSSHHHHHHHHHHTTTCC--------CHHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred             HHhhhcCCcHHHHHHHHHHHHHHH--------hhhHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence            777778888888888888876665        1233333 345677888888888887774

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=99.00  E-value=1.5e-08  Score=91.38  Aligned_cols=183  Identities=11%  Similarity=0.062  Sum_probs=126.0

Q ss_pred             HHHhcCCChHHHHHHHHHhHHHHHhhhCHHHH-------HHhhhHHHHHhccCCcHHHHHHHHHHHHccccccChH----
Q 009975          219 YVRLLRDNEAEVRIAAAGKVTKFCRILNPELA-------IQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD----  287 (521)
Q Consensus       219 l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~-------~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~----  287 (521)
                      +.+-+.+.+|..|..|++.+..+....+....       ...+.+.+...+.|.|..|...++.++..++..++..    
T Consensus        14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~   93 (278)
T 4ffb_C           14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN   93 (278)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred             HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence            44556666677777666666655544322111       1224556667777888888888877777776655432    


Q ss_pred             ----HHHHhHHHHHH-HhhcCCChHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhh
Q 009975          288 ----ATIEQLLPIFL-SLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL  362 (521)
Q Consensus       288 ----~~~~~l~~~l~-~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~  362 (521)
                          .....++|.+. +++.|..+.+|..+..++..++...+..   ..+++.+...+++++|++|..++.++..+...+
T Consensus        94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~---~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~f  170 (278)
T 4ffb_C           94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI---TQSVELVIPFFEKKLPKLIAAAANCVYELMAAF  170 (278)
T ss_dssp             HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS---HHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH---HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHh
Confidence                12345667665 4588999999999999988877654322   345666777789999999999999999999888


Q ss_pred             Chhh-----hHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHH
Q 009975          363 GVGF-----FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE  404 (521)
Q Consensus       363 ~~~~-----~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~  404 (521)
                      |...     ..+.+++.+..++.|.++.||.+|..+++.+...+|..
T Consensus       171 g~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~~  217 (278)
T 4ffb_C          171 GLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGNN  217 (278)
T ss_dssp             TTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC----
T ss_pred             CCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCcc
Confidence            7643     23456677788899999999999999999999888853

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=98.94  E-value=2.8e-10  Score=89.88  Aligned_cols=119  Identities=19%  Similarity=0.191  Sum_probs=62.1

Q ss_pred             cchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccChHHHHHh
Q 009975          213 MDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQ  292 (521)
Q Consensus       213 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~  292 (521)
                      ..-.+.+...++|+++.+|..|+.+|+.+...        . ++.+..+++|+++.||..++++++.+..        ..
T Consensus        11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~--------~-~~~L~~~L~d~~~~vR~~A~~aL~~~~~--------~~   73 (131)
T 1te4_A           11 SSGLVPRGSHMADENKWVRRDVSTALSRMGDE--------A-FEPLLESLSNEDWRIRGAAAWIIGNFQD--------ER   73 (131)
T ss_dssp             ----------CCSSCCCSSSSCCSSTTSCSST--------T-HHHHHHGGGCSCHHHHHHHHHHHGGGCS--------HH
T ss_pred             cccHHHHHHHhcCCCHHHHHHHHHHHHHhCch--------H-HHHHHHHHcCCCHHHHHHHHHHHHhcCC--------HH
Confidence            34455566666666666666666666544321        1 2555555566666666666666666541        23


Q ss_pred             HHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHhcCCChHHHHHHHHHhH
Q 009975          293 LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIP  356 (521)
Q Consensus       293 l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~  356 (521)
                      .++.+...++|+++.||..|+.+++.+..        ...+|.+.+.++|+++.||..++.+|.
T Consensus        74 a~~~L~~~L~d~~~~VR~~A~~aL~~~~~--------~~a~~~L~~~l~d~~~~vr~~A~~aL~  129 (131)
T 1te4_A           74 AVEPLIKLLEDDSGFVRSGAARSLEQIGG--------ERVRAAMEKLAETGTGFARKVAVNYLE  129 (131)
T ss_dssp             HHHHHHHHHHHCCTHHHHHHHHHHHHHCS--------HHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------HHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence            35555556666666666666666665542        334555555555666666666655554

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}

Probab=98.93  E-value=9.5e-09  Score=86.08  Aligned_cols=141  Identities=20%  Similarity=0.230  Sum_probs=111.4

Q ss_pred             HHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcChhhhhhhhHHHHHH-hcCCCChHHHHHHHHHHHHHHHHhCCCccc
Q 009975          134 KTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVN-FSQDKSWRVRYMVANQLYELCEAVGPEPTR  212 (521)
Q Consensus       134 ~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~-~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~  212 (521)
                      .++++++...+.+++.+.||..|+.+++.. .      ....+++.+.. +..|++|.||..++..++.++...+++   
T Consensus        69 ~~~~~~la~~L~~~~~deVR~~Av~lLg~~-~------~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe---  138 (240)
T 3l9t_A           69 GEYIKKLAFLAYQSDVYQVRMYAVFLFGYL-S------KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK---  138 (240)
T ss_dssp             HHHHHHHHHHHHTCSSHHHHHHHHHHHHHT-T------TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT---
T ss_pred             HHHHHHHHHHHHhCcchHHHHHHHHHHHhc-c------CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH---
Confidence            678889999999999999999999988877 2      22568888887 889999999999999999998755544   


Q ss_pred             cchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccC
Q 009975          213 MDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLG  285 (521)
Q Consensus       213 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~  285 (521)
                       ..++.+...++|++..||.+|+...-..+.......-.+.++|.+..+..|++..||.+++.++..+++.-+
T Consensus       139 -~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~P  210 (240)
T 3l9t_A          139 -KALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFP  210 (240)
T ss_dssp             -TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCH
T ss_pred             -HHHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCH
Confidence             367889999999999999999887643332211112234578888888999999999999999988875443

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=98.92  E-value=2.7e-10  Score=89.90  Aligned_cols=121  Identities=16%  Similarity=0.140  Sum_probs=81.8

Q ss_pred             HHhhhHHHHHhccCCcHHHHHHHHHHHHccccccChHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchhhHhh
Q 009975          251 IQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQ  330 (521)
Q Consensus       251 ~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~  330 (521)
                      .....+.+..+++|+++.+|..++..++.+..    .    . ++.+..+++|+++.||..|+.+++.+..        .
T Consensus        10 ~~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~----~----~-~~~L~~~L~d~~~~vR~~A~~aL~~~~~--------~   72 (131)
T 1te4_A           10 HSSGLVPRGSHMADENKWVRRDVSTALSRMGD----E----A-FEPLLESLSNEDWRIRGAAAWIIGNFQD--------E   72 (131)
T ss_dssp             -----------CCSSCCCSSSSCCSSTTSCSS----T----T-HHHHHHGGGCSCHHHHHHHHHHHGGGCS--------H
T ss_pred             ccccHHHHHHHhcCCCHHHHHHHHHHHHHhCc----h----H-HHHHHHHHcCCCHHHHHHHHHHHHhcCC--------H
Confidence            34456777777888888888888777766542    1    1 4777888888888888888888888754        3


Q ss_pred             hHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChhhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q 009975          331 SLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKR  396 (521)
Q Consensus       331 ~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~  396 (521)
                      ..++.+...++|+++.||..++.+++.+..        +..+|.+...++|+++.||..|..+|+.
T Consensus        73 ~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~--------~~a~~~L~~~l~d~~~~vr~~A~~aL~~  130 (131)
T 1te4_A           73 RAVEPLIKLLEDDSGFVRSGAARSLEQIGG--------ERVRAAMEKLAETGTGFARKVAVNYLET  130 (131)
T ss_dssp             HHHHHHHHHHHHCCTHHHHHHHHHHHHHCS--------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence            456777777788888888888888776531        3456777777888888888888877653

>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6

Probab=98.75  E-value=1.1e-06  Score=91.99  Aligned_cols=387  Identities=10%  Similarity=0.004  Sum_probs=213.9

Q ss_pred             CCChHHHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCc------hhhHHHHHHHHHHhhc-CCChhHHHHHHHHHH
Q 009975           89 SAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP------AHLKTDIMSIFEDLTQ-DDQDSVRLLAVEGCA  161 (521)
Q Consensus        89 ~~~~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~------~~~~~~l~~~l~~l~~-d~~~~vr~~a~~~l~  161 (521)
                      +..+...+.+.+.+..+..+++..-+..+++.++.++.....      +..++.+.|++...+. +-+++.......++.
T Consensus       500 n~~~~~l~~l~~~~e~L~~~~dk~~qr~aaEi~aGll~gsK~w~~~~~~~~w~~l~p~l~~~l~~~lt~et~~~W~~~i~  579 (997)
T 1vsy_5          500 GFCELNMSDLFELCESYYNKDDKASMIMSVEIVAGLVCGSKFMSVSDLDKRDTFIENFLAKCLDYELNHDAFEIWSTLAW  579 (997)
T ss_dssp             TTCCCCGGGHHHHHHHTCCSSCHHHHHHHHHHHHHHSSCCSSCCTTTHHHHHHHHHHHHHHHHSSCCCTTHHHHHHHHHH
T ss_pred             ccchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHH
Confidence            334445788999999999999988999999999988754321      3577889999999888 456655555555555


Q ss_pred             HHhhhcChhhhhhhhHHHHHHh----c-CCCChHHHHHHHHHHHHHHHHhCCCcc-ccchHHHHHHhcCCChHHHHHHHH
Q 009975          162 ALGKLLEPQDCVAHILPVIVNF----S-QDKSWRVRYMVANQLYELCEAVGPEPT-RMDLVPAYVRLLRDNEAEVRIAAA  235 (521)
Q Consensus       162 ~l~~~~~~~~~~~~l~~~l~~~----~-~d~~~~vR~~~~~~l~~i~~~~~~~~~-~~~l~~~l~~~l~d~~~~vr~~a~  235 (521)
                      .+.....+. ...-++..+..+    . ++.+.-....-...+..+....+-... ...++..+.  +..+...||++..
T Consensus       580 ~~~~~~Dpr-R~~~L~e~l~~~~~~l~~~~~ssf~~~~rl~ll~~~l~~~~wr~~~~~~~l~~~~--l~h~y~~VRe~Ig  656 (997)
T 1vsy_5          580 WLPAVVDLR-RSKTFFCHFINADGMFDRESDAATHQTSKIYMLRSILMSMEFRAPDVGKLFDELV--FDHPYDQVRQAVA  656 (997)
T ss_dssp             HHHHHSCGG-GCHHHHHHHTCCCCCCCCCSSCCCCCCSSHHHHHHHHHHHTTSSCCCHHHHHHCC--SCCSCHHHHHHHH
T ss_pred             HHhcCCChh-hhHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHhccccccHHHHHHHHH--hCCChHHHHHHHH
Confidence            555544332 112233333111    0 111111111112222222222221111 223333333  5556678888887


Q ss_pred             HhHHHHHhhhC----------------------------HHHHHHhhhHHHHHh---cc---C--C-----cH--HHHHH
Q 009975          236 GKVTKFCRILN----------------------------PELAIQHILPCVKEL---SS---D--S-----SQ--HVRSA  272 (521)
Q Consensus       236 ~~l~~l~~~~~----------------------------~~~~~~~~~~~l~~~---~~---d--~-----~~--~vr~~  272 (521)
                      ..|..+....-                            +..+.+.+...+..+   ..   +  +     +.  ..-..
T Consensus       657 ~~L~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~l~~~~~~~~~~~~~~~~~s~y~~~~kT  736 (997)
T 1vsy_5          657 KLLTTLVQNQSNPSISDPTTLLEAERNDPDGLGLPLKSVPEKVDAYIKKQFEIIKNLEDSVVGLNPQQFIKTDYFYRTST  736 (997)
T ss_dssp             HHHHHHHHTSCCCCBSCHHHHHHHHHSCSSSSCCCSSCCCHHHHHHHHHHHHHHTGGGGTTSSCCSTTTTTSHHHHHHHH
T ss_pred             HHHHHHHHhhcccCCCCHHHHHHhhccccccccCccccCcchHHHHHHHHHHHHHHhhhcccccCccccchHHHHHHHHH
Confidence            77766555430                            011111111111111   00   0  1     11  11223


Q ss_pred             HHHHHHccccccChHHH---HH-hHHHHHHHhhcCCCh-HHHHH-HHHHHHHhhhhhchhhHhhhHHHHHHHHhc-CCCh
Q 009975          273 LASVIMGMAPLLGKDAT---IE-QLLPIFLSLLKDEFP-DVRLN-IISKLDQVNQVIGIDLLSQSLLPAIVELAE-DRHW  345 (521)
Q Consensus       273 ~~~~l~~i~~~~~~~~~---~~-~l~~~l~~~l~d~~~-~vr~~-a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~  345 (521)
                      ++.++............   .. .++|.++.+.++.+. +.... +...+..+....-+....+.++..+.+... +++|
T Consensus       737 vl~wl~~~l~~~~~~~l~~~~~~~llP~ll~l~~~~d~~eL~~~~a~~~l~~ls~~~~~~~~~~~~l~~l~~~~~~s~sW  816 (997)
T 1vsy_5          737 IFYWIKEMARGPNKVLLVPYLVDYVLPFLIGLVKHKDVCALASLDPVRLYAGLGYMPIRKNHVAAIVDYVCSSNVALSSN  816 (997)
T ss_dssp             HHHHHHHHSSGGGHHHHHHHHTTTTTTTTCTTSSCSHHHHHTTCCSHHHHHHTSSSCCCHHHHHHHHHHSSCTTTTSCSS
T ss_pred             HHHHHHHHhcCCCccchhhhhHHHHHHHHHHHhhcCcHHHHHhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCcH
Confidence            34333333221111111   11 255555555555543 44444 444455543322222222455555555555 6899


Q ss_pred             HHHHHHHHHhHHHHhh----hChhhhHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcC
Q 009975          346 RVRLAIIEYIPLLASQ----LGVGFFDDKLGALCMQWLQDKV-YSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINN  420 (521)
Q Consensus       346 ~vr~~~~~~l~~l~~~----~~~~~~~~~l~~~l~~~l~d~~-~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~  420 (521)
                       .|..++..+..+.-.    ++.+. ...+...+..+|.|+. .+||+.|..+|+.++...+.....+.++..+.+.+..
T Consensus       817 -~R~~~L~~lq~~~f~n~f~l~~~~-~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~~~~~~~li~~f~~~~~~  894 (997)
T 1vsy_5          817 -QTKLQLAFIQHFLSAELLQLTEEE-KNKILEFVVSNLYNEQFVEVRVRAASILSDIVHNWKEEQPLLSLIERFAKGLDV  894 (997)
T ss_dssp             -SHHHHHHHHHHHHHHHTTTSCTTH-HHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHTTSSTT
T ss_pred             -HHHHHHHHHHHHHHHHHHHcCHHH-HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh
Confidence             999998887665421    12222 3567888899999999 9999999999999987652322233455555554422


Q ss_pred             ------------cchHHHHHHHHHHHHhhcccCh----HHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhch
Q 009975          421 ------------PHYLYRMTILRAISLLAPVMGS----EITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ  481 (521)
Q Consensus       421 ------------~~~~~r~~a~~~l~~l~~~~~~----~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~  481 (521)
                                  .+-..|.+++-.+++++..++-    +.+.+.++..+-....|+.+ |+.++-++++.+-..-..
T Consensus       895 ~~~~~~~~~~~~~~~~~rH~aVLgL~AlV~a~Py~vP~P~w~P~~l~~La~~~~~~~~-i~~tvk~tlseFkrTH~D  970 (997)
T 1vsy_5          895 NKYTSKERQKLSKTDIKIHGNVLGLGAIISAFPYVFPLPPWIPKNLSNLSSWARTSGM-TGNAAKNTISEFKKVRAD  970 (997)
T ss_dssp             TSSCHHHHHHHHHHCHHHHHHHHHHHHHHTTCSCCSSCCTHHHHHHHHHHTTSSSCSS-HHHHTHHHHHHHHHHTST
T ss_pred             cccccccccccchHHHHHHHHHHHHHHHHhhCCCCCCCCcccHHHHHHHHHHhCCCCc-hHHHHHHHHHHHHhccch
Confidence                        1226788999999999975542    34566677777777788654 999999999998765433

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}

Probab=98.70  E-value=1.7e-06  Score=72.64  Aligned_cols=138  Identities=9%  Similarity=0.116  Sum_probs=79.7

Q ss_pred             hhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChhhhHHHHHHHHHH-HcCCCcHHHHHHHHHHHHHHHHHhCHHHHHh
Q 009975          330 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQ-WLQDKVYSIRDAAANNLKRLAEEFGPEWAMQ  408 (521)
Q Consensus       330 ~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~-~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~  408 (521)
                      +.+++....+.+++...+|..++..++.. .      ..+.+++.+.. +..|+++.||..+..+++.++...++    +
T Consensus        70 ~~~~~la~~L~~~~~deVR~~Av~lLg~~-~------~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~p----e  138 (240)
T 3l9t_A           70 EYIKKLAFLAYQSDVYQVRMYAVFLFGYL-S------KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEY----K  138 (240)
T ss_dssp             HHHHHHHHHHHTCSSHHHHHHHHHHHHHT-T------TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCT----T
T ss_pred             HHHHHHHHHHHhCcchHHHHHHHHHHHhc-c------CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCH----H
Confidence            44555556666666666666666654444 1      11345555555 55566666666666666666543332    2


Q ss_pred             hhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChHHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhh
Q 009975          409 HITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPI  478 (521)
Q Consensus       409 ~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~  478 (521)
                      ..++.+.....|+|..+|..|.+...-.+.........+.++|.+-.+..|++..||.+..+.|..+.+.
T Consensus       139 ~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~  208 (240)
T 3l9t_A          139 KALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKK  208 (240)
T ss_dssp             TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhh
Confidence            3455555666666666666666554332221111112345777777778888888888888888777765

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=98.37  E-value=0.00029  Score=65.52  Aligned_cols=254  Identities=14%  Similarity=0.065  Sum_probs=147.8

Q ss_pred             HHHHHHHHHhHHHHHhhhCHHHHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccChHHHHHhHHHHHHHhhcCCChH
Q 009975          228 AEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPD  307 (521)
Q Consensus       228 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~  307 (521)
                      ...+..|...+..+....+.-  .+..+..+..+++|.+..||..++..++.++..    .....+..++.++++.+++.
T Consensus        42 ~k~K~LaaQ~I~kffk~FP~l--~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~----~~i~kiaDvL~QlLqtdd~~  115 (507)
T 3u0r_A           42 TKEKRLAAQFIPKFFKHFPEL--ADSAINAQLDLCEDEDVSIRRQAIKELPQFATG----ENLPRVADILTQLLQTDDSA  115 (507)
T ss_dssp             HHHHHHHHHHHHHHGGGCGGG--HHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT----TCHHHHHHHHHHHTTCCCHH
T ss_pred             HHHHHHHHHHHHHHHhhChhh--HHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh----hhhhhHHHHHHHHHhccchH
Confidence            567777777777777766542  245567777888888888888888888888765    33567788888888888877


Q ss_pred             HHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChhh----hHHHHHHHHHHHcCCCc
Q 009975          308 VRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF----FDDKLGALCMQWLQDKV  383 (521)
Q Consensus       308 vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~d~~  383 (521)
                      .+..+-.+|..+.+.-....+ ..++.   ++.+ .+..+|..++..|..-...++.+.    ....+...+.+.++|-.
T Consensus       116 E~~~V~~sL~sllk~Dpk~tl-~~lf~---~i~~-~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~~~ikK~L~DVT  190 (507)
T 3u0r_A          116 EFNLVNNALLSIFKMDAKGTL-GGLFS---QILQ-GEDIVRERAIKFLSTKLKTLPDEVLTKEVEELILTESKKVLEDVT  190 (507)
T ss_dssp             HHHHHHHHHHHHHHHCHHHHH-HHHHH---HHHH-SCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHTTSCC
T ss_pred             HHHHHHHHHHHHHhcChHHHH-HHHHH---HHcc-cchHHHHHHHHHHHHHHhhcchhhccHHHHHHHHHHHHHHhcccc
Confidence            777777777777664332222 22222   2222 356888888888776666555543    34556666677777654


Q ss_pred             HHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhh------cCcchHHHHHHHHHHHHhh----cccChHHHhhcHHHHH
Q 009975          384 YSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMI------NNPHYLYRMTILRAISLLA----PVMGSEITCSRLLPVV  453 (521)
Q Consensus       384 ~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l------~~~~~~~r~~a~~~l~~l~----~~~~~~~~~~~il~~l  453 (521)
                      .+-=...+..|+.+ +.++.....+++++.+.+..      ...+...-...+.++....    .......|..++...+
T Consensus       191 ~~EF~L~m~lL~~l-kl~~t~~g~qeLv~ii~eQa~L~~~f~~sD~e~vdRlI~C~~~ALP~FS~~v~StkFv~y~~~kI  269 (507)
T 3u0r_A          191 GEEFVLFMKILSGL-KSLQTVSGRQQLVELVAEQADLEQTFNPSDPDCVDRLLQCTRQAVPLFSKNVHSTRFVTYFCEQV  269 (507)
T ss_dssp             HHHHHHHHHHHHTS-GGGSSHHHHHHHHHHHHHHHTTTSCCCSSCHHHHHHHHHHHHHHGGGCBTTBCCHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhc-ccccCchHHHHHHHHHHHHHhccCCCCCcCHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHhh
Confidence            33222222333221 12222223455666665532      1123333233334444433    3334444555555556


Q ss_pred             HhhcCCCCc-----hHHHHHHHHHHHHHhhhchHHHHhhHHHHHH
Q 009975          454 INASKDRVP-----NIKFNVAKVLQSLIPIVDQSMVEKTIRPCLV  493 (521)
Q Consensus       454 ~~~l~d~~~-----~VR~~a~~~l~~~~~~~~~~~~~~~~~~~l~  493 (521)
                      +..+++-..     ..|...++++..++...+........+|.+.
T Consensus       270 lP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~~~~e~a~~~l~~iy  314 (507)
T 3u0r_A          270 LPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCGDMEKLETNLRKLF  314 (507)
T ss_dssp             GGGTTCCCCC--CCCHHHHHHHHHHHHHTTCCCCTTHHHHHHHHH
T ss_pred             ccchhhccccccchHHHHHHHHHHHHHccCCCccchHHHHHHHHH
Confidence            666655433     3799999999999998873332233333333

>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6

Probab=98.34  E-value=5.8e-06  Score=86.63  Aligned_cols=379  Identities=12%  Similarity=0.014  Sum_probs=200.6

Q ss_pred             chhHHhhhhHHhhhhcCchhHHHHHHHHHHHHHHhhcC------hhHHHHhHHHHHHHhhcCC-CCcch--hhhhhhhhh
Q 009975           15 VEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMR------ESDLVDWYIPLVKRLAAGE-WFTAR--VSACGLFHI   85 (521)
Q Consensus        15 ~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~------~~~~~~~l~p~i~~~~~~~-~~~~r--~~~~~~~~~   85 (521)
                      +...+.+.+.++.+..+++..-...|++.++.++....      -+..++.+.|++.....++ ..+..  +..+-  ..
T Consensus       503 ~~~l~~l~~~~e~L~~~~dk~~qr~aaEi~aGll~gsK~w~~~~~~~~w~~l~p~l~~~l~~~lt~et~~~W~~~i--~~  580 (997)
T 1vsy_5          503 ELNMSDLFELCESYYNKDDKASMIMSVEIVAGLVCGSKFMSVSDLDKRDTFIENFLAKCLDYELNHDAFEIWSTLA--WW  580 (997)
T ss_dssp             CCCGGGHHHHHHHTCCSSCHHHHHHHHHHHHHHSSCCSSCCTTTHHHHHHHHHHHHHHHHSSCCCTTHHHHHHHHH--HH
T ss_pred             hhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHH--HH
Confidence            56678899999999999999889999999998887642      2457789999998877732 22211  22211  11


Q ss_pred             hcCCCChHHHHHHHHHHHH----h-cCCCChHHHHHHHHhHHHHHHhhCc--hhhHHHHHHHHHHhhcCCChhHHHHHHH
Q 009975           86 AYPSAPDILKTELRSIYTQ----L-CQDDMPMVRRSAASNLGKFAATVEP--AHLKTDIMSIFEDLTQDDQDSVRLLAVE  158 (521)
Q Consensus        86 ~~~~~~~~~~~~l~~~l~~----l-~~~~~~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~l~~d~~~~vr~~a~~  158 (521)
                      +....++....-++..+..    + ..+.+......-...|..+....+-  .. ...++..+.  ++.+...||.....
T Consensus       581 ~~~~~DprR~~~L~e~l~~~~~~l~~~~~ssf~~~~rl~ll~~~l~~~~wr~~~-~~~~l~~~~--l~h~y~~VRe~Ig~  657 (997)
T 1vsy_5          581 LPAVVDLRRSKTFFCHFINADGMFDRESDAATHQTSKIYMLRSILMSMEFRAPD-VGKLFDELV--FDHPYDQVRQAVAK  657 (997)
T ss_dssp             HHHHSCGGGCHHHHHHHTCCCCCCCCCSSCCCCCCSSHHHHHHHHHHHTTSSCC-CHHHHHHCC--SCCSCHHHHHHHHH
T ss_pred             HhcCCChhhhHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHhcccccc-HHHHHHHHH--hCCChHHHHHHHHH
Confidence            1112233323444444422    1 1112222222222333333322221  11 223333333  45566778887777


Q ss_pred             HHHHHhhhcCh----------------------------hhhhhhhHHHHHHhc---C---C--C-----ChHH--HHHH
Q 009975          159 GCAALGKLLEP----------------------------QDCVAHILPVIVNFS---Q---D--K-----SWRV--RYMV  195 (521)
Q Consensus       159 ~l~~l~~~~~~----------------------------~~~~~~l~~~l~~~~---~---d--~-----~~~v--R~~~  195 (521)
                      ++..+....-.                            +.....+..++..+-   .   +  +     +...  -+.+
T Consensus       658 ~L~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~l~~~~~~~~~~~~~~~~~s~y~~~~kTv  737 (997)
T 1vsy_5          658 LLTTLVQNQSNPSISDPTTLLEAERNDPDGLGLPLKSVPEKVDAYIKKQFEIIKNLEDSVVGLNPQQFIKTDYFYRTSTI  737 (997)
T ss_dssp             HHHHHHHTSCCCCBSCHHHHHHHHHSCSSSSCCCSSCCCHHHHHHHHHHHHHHTGGGGTTSSCCSTTTTTSHHHHHHHHH
T ss_pred             HHHHHHHhhcccCCCCHHHHHHhhccccccccCccccCcchHHHHHHHHHHHHHHhhhcccccCccccchHHHHHHHHHH
Confidence            77766554310                            000001111111111   1   1  1     1111  1122


Q ss_pred             HHHHHHHHHHhCCC-------ccccchHHHHHHhcCCChH-HHHHH-HHHhHHHHHhhhCHHHHHHhhhHHHHHhcc-CC
Q 009975          196 ANQLYELCEAVGPE-------PTRMDLVPAYVRLLRDNEA-EVRIA-AAGKVTKFCRILNPELAIQHILPCVKELSS-DS  265 (521)
Q Consensus       196 ~~~l~~i~~~~~~~-------~~~~~l~~~l~~~l~d~~~-~vr~~-a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~-d~  265 (521)
                      +..+.   ..++..       .....++|.+..+.++.+. ++... |..++..++...-+....+.++..+.+... ++
T Consensus       738 l~wl~---~~l~~~~~~~l~~~~~~~llP~ll~l~~~~d~~eL~~~~a~~~l~~ls~~~~~~~~~~~~l~~l~~~~~~s~  814 (997)
T 1vsy_5          738 FYWIK---EMARGPNKVLLVPYLVDYVLPFLIGLVKHKDVCALASLDPVRLYAGLGYMPIRKNHVAAIVDYVCSSNVALS  814 (997)
T ss_dssp             HHHHH---HHSSGGGHHHHHHHHTTTTTTTTCTTSSCSHHHHHTTCCSHHHHHHTSSSCCCHHHHHHHHHHSSCTTTTSC
T ss_pred             HHHHH---HHhcCCCccchhhhhHHHHHHHHHHHhhcCcHHHHHhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCC
Confidence            22222   222211       0112266666666666654 55555 555666655443333444556666666665 68


Q ss_pred             cHHHHHHHHHHHHcccc----ccChHHHHHhHHHHHHHhhcCCC-hHHHHHHHHHHHHhhhhhch-hhHhhhHHHHHHHH
Q 009975          266 SQHVRSALASVIMGMAP----LLGKDATIEQLLPIFLSLLKDEF-PDVRLNIISKLDQVNQVIGI-DLLSQSLLPAIVEL  339 (521)
Q Consensus       266 ~~~vr~~~~~~l~~i~~----~~~~~~~~~~l~~~l~~~l~d~~-~~vr~~a~~~l~~~~~~~~~-~~~~~~~~~~l~~~  339 (521)
                      +| .|.+++..+..+.-    .+.++. ...+...+..++.|+. .|||..|..+|+.++...+. ... ..++..+.+.
T Consensus       815 sW-~R~~~L~~lq~~~f~n~f~l~~~~-~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~~~~~-~~li~~f~~~  891 (997)
T 1vsy_5          815 SN-QTKLQLAFIQHFLSAELLQLTEEE-KNKILEFVVSNLYNEQFVEVRVRAASILSDIVHNWKEEQPL-LSLIERFAKG  891 (997)
T ss_dssp             SS-SHHHHHHHHHHHHHHHTTTSCTTH-HHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSCCSHHHH-HHHHHHHTTS
T ss_pred             cH-HHHHHHHHHHHHHHHHHHHcCHHH-HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCchhhH-HHHHHHHHHH
Confidence            99 99998777655421    123332 3578899999999999 99999999999999876522 222 3444444443


Q ss_pred             hcC------------CChHHHHHHHHHhHHHHhhhChh----hhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCH
Q 009975          340 AED------------RHWRVRLAIIEYIPLLASQLGVG----FFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP  403 (521)
Q Consensus       340 ~~~------------~~~~vr~~~~~~l~~l~~~~~~~----~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~  403 (521)
                      ...            ++-..|-+++-.|+.+...++-+    .+.+.++..+-....|+.+ ++.++-++++.+-++-..
T Consensus       892 ~~~~~~~~~~~~~~~~~~~~rH~aVLgL~AlV~a~Py~vP~P~w~P~~l~~La~~~~~~~~-i~~tvk~tlseFkrTH~D  970 (997)
T 1vsy_5          892 LDVNKYTSKERQKLSKTDIKIHGNVLGLGAIISAFPYVFPLPPWIPKNLSNLSSWARTSGM-TGNAAKNTISEFKKVRAD  970 (997)
T ss_dssp             STTTSSCHHHHHHHHHHCHHHHHHHHHHHHHHTTCSCCSSCCTHHHHHHHHHHTTSSSCSS-HHHHTHHHHHHHHHHTST
T ss_pred             HhhcccccccccccchHHHHHHHHHHHHHHHHhhCCCCCCCCcccHHHHHHHHHHhCCCCc-hHHHHHHHHHHHHhccch
Confidence            311            11134556666777777666544    2344444444445566444 777777777777665544


Q ss_pred             HH
Q 009975          404 EW  405 (521)
Q Consensus       404 ~~  405 (521)
                      .|
T Consensus       971 ~W  972 (997)
T 1vsy_5          971 TW  972 (997)
T ss_dssp             TH
T ss_pred             hH
Confidence            44

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=98.22  E-value=0.00091  Score=62.27  Aligned_cols=242  Identities=11%  Similarity=0.100  Sum_probs=148.3

Q ss_pred             ChhHHHHHHHHHHHHhhhcChhhhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChH
Q 009975          149 QDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEA  228 (521)
Q Consensus       149 ~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~  228 (521)
                      +...+..|.+.+....+.++.  ....-+..+..+|+|.+..||..+++.|..+++.    ...+.+..++.++++.+++
T Consensus        41 ~~k~K~LaaQ~I~kffk~FP~--l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~----~~i~kiaDvL~QlLqtdd~  114 (507)
T 3u0r_A           41 GTKEKRLAAQFIPKFFKHFPE--LADSAINAQLDLCEDEDVSIRRQAIKELPQFATG----ENLPRVADILTQLLQTDDS  114 (507)
T ss_dssp             CHHHHHHHHHHHHHHGGGCGG--GHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT----TCHHHHHHHHHHHTTCCCH
T ss_pred             CHHHHHHHHHHHHHHHhhChh--hHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh----hhhhhHHHHHHHHHhccch
Confidence            577788999999999988854  5567788889999999999999999999988754    3357889999999998887


Q ss_pred             HHHHHHHHhHHHHHhhhCHHHHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccCh----HHHHHhHHHHHHHhhcCC
Q 009975          229 EVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK----DATIEQLLPIFLSLLKDE  304 (521)
Q Consensus       229 ~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~----~~~~~~l~~~l~~~l~d~  304 (521)
                      .-+...-++|..+... .+......++..+..    .++.+|.-++..+..-...++.    ....+.+...+.+.++|-
T Consensus       115 ~E~~~V~~sL~sllk~-Dpk~tl~~lf~~i~~----~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~~~ikK~L~DV  189 (507)
T 3u0r_A          115 AEFNLVNNALLSIFKM-DAKGTLGGLFSQILQ----GEDIVRERAIKFLSTKLKTLPDEVLTKEVEELILTESKKVLEDV  189 (507)
T ss_dssp             HHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHH----SCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHHHHhc-ChHHHHHHHHHHHcc----cchHHHHHHHHHHHHHHhhcchhhccHHHHHHHHHHHHHHhccc
Confidence            7777777788777764 333333333333333    3578888888887654433333    334556777888888776


Q ss_pred             ChHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHhc------CCChHHHHHHHH----HhHHHHhhhChhhhHHHHHHH
Q 009975          305 FPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAE------DRHWRVRLAIIE----YIPLLASQLGVGFFDDKLGAL  374 (521)
Q Consensus       305 ~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~------~~~~~vr~~~~~----~l~~l~~~~~~~~~~~~l~~~  374 (521)
                      ..+-=.-.+..|..+- ..+.-.-.+.+++.+.+..+      ..+...-...+.    ++..+.+......|..++..-
T Consensus       190 T~~EF~L~m~lL~~lk-l~~t~~g~qeLv~ii~eQa~L~~~f~~sD~e~vdRlI~C~~~ALP~FS~~v~StkFv~y~~~k  268 (507)
T 3u0r_A          190 TGEEFVLFMKILSGLK-SLQTVSGRQQLVELVAEQADLEQTFNPSDPDCVDRLLQCTRQAVPLFSKNVHSTRFVTYFCEQ  268 (507)
T ss_dssp             CHHHHHHHHHHHHTSG-GGSSHHHHHHHHHHHHHHHTTTSCCCSSCHHHHHHHHHHHHHHGGGCBTTBCCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhcc-cccCchHHHHHHHHHHHHHhccCCCCCcCHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHh
Confidence            5433222333332211 11100112455666655421      123332233333    333344444444444444444


Q ss_pred             HHHHcCCCc-----HHHHHHHHHHHHHHHHHhC
Q 009975          375 CMQWLQDKV-----YSIRDAAANNLKRLAEEFG  402 (521)
Q Consensus       375 l~~~l~d~~-----~~vr~~a~~~l~~l~~~~~  402 (521)
                      ++..+++-.     .+.+...+++++.++...|
T Consensus       269 IlP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~~  301 (507)
T 3u0r_A          269 VLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCG  301 (507)
T ss_dssp             TGGGTTCCCCC--CCCHHHHHHHHHHHHHTTCC
T ss_pred             hccchhhccccccchHHHHHHHHHHHHHccCCC
Confidence            433444322     2367778899999998887

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=98.18  E-value=0.00051  Score=67.04  Aligned_cols=296  Identities=11%  Similarity=0.096  Sum_probs=171.6

Q ss_pred             HhcCCCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHhhhcChh------------
Q 009975          104 QLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDD-QDSVRLLAVEGCAALGKLLEPQ------------  170 (521)
Q Consensus       104 ~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~-~~~vr~~a~~~l~~l~~~~~~~------------  170 (521)
                      .+.+..-.+=|+.|+..|..+++....+.-...+-+++..+-+|. +..+-..+.++|..+...-+.+            
T Consensus        29 Rl~~~tl~eDRR~Av~~Lk~~sk~y~~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~  108 (651)
T 3grl_A           29 RVASSTLLDDRRNAVRALKSLSKKYRLEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSED  108 (651)
T ss_dssp             HHHHCCSHHHHHHHHHHHHHTTTTTTTHHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------C
T ss_pred             HHhhccchhHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchH
Confidence            344455677788888888888776654433344444444444443 4455556677775554322110            


Q ss_pred             -------h--hhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCc----c-ccchHHHHHHhcCCChHHHHHHHHH
Q 009975          171 -------D--CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP----T-RMDLVPAYVRLLRDNEAEVRIAAAG  236 (521)
Q Consensus       171 -------~--~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~----~-~~~l~~~l~~~l~d~~~~vr~~a~~  236 (521)
                             .  ..+.-++.+..++++.+..+|..+++.|..++..-+...    . .+.=++.++.+++|+...+|..++-
T Consensus       109 ~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneall  188 (651)
T 3grl_A          109 LGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVL  188 (651)
T ss_dssp             HHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHH
Confidence                   0  123357888889999999999999999999886544311    1 2356789999999999999999999


Q ss_pred             hHHHHHhhhCHH---HHHHhhhHHHHHhccCCc----HHHHHHHHHHHHcccccc--ChHHHHH-hHHHHHHHhhcCCCh
Q 009975          237 KVTKFCRILNPE---LAIQHILPCVKELSSDSS----QHVRSALASVIMGMAPLL--GKDATIE-QLLPIFLSLLKDEFP  306 (521)
Q Consensus       237 ~l~~l~~~~~~~---~~~~~~~~~l~~~~~d~~----~~vr~~~~~~l~~i~~~~--~~~~~~~-~l~~~l~~~l~d~~~  306 (521)
                      .|..+...-..-   ...+..++.+..++....    ..|-.-++..+..+.+.=  ....+.+ ..+|.+..+++..++
T Consensus       189 LL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~  268 (651)
T 3grl_A          189 LLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDE  268 (651)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSC
T ss_pred             HHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCcc
Confidence            998887743211   112223444444443322    245555566666665442  2222332 345555666653321


Q ss_pred             ------HHHHH---HHHHHHHhhhhhch---------hhHhhhHHHHHHHHhcCC--ChHHHHHHHHHhHHHHhhhCh--
Q 009975          307 ------DVRLN---IISKLDQVNQVIGI---------DLLSQSLLPAIVELAEDR--HWRVRLAIIEYIPLLASQLGV--  364 (521)
Q Consensus       307 ------~vr~~---a~~~l~~~~~~~~~---------~~~~~~~~~~l~~~~~~~--~~~vr~~~~~~l~~l~~~~~~--  364 (521)
                            ....+   ++..+..++..-+.         ......+++.+.++.-..  ...+|..++.+++.+...-..  
T Consensus       269 ~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q  348 (651)
T 3grl_A          269 NSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQ  348 (651)
T ss_dssp             SSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             ccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence                  12222   23333333322111         112345677777765443  567888888888877654321  


Q ss_pred             hhhH----------HHHHHHHHHHcCC-CcHHHHHHHHHHHHHHHH
Q 009975          365 GFFD----------DKLGALCMQWLQD-KVYSIRDAAANNLKRLAE  399 (521)
Q Consensus       365 ~~~~----------~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~  399 (521)
                      +.|.          +.++.+++.++.+ ....+|.+|+.++..+..
T Consensus       349 ~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~  394 (651)
T 3grl_A          349 DYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLY  394 (651)
T ss_dssp             HHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHT
T ss_pred             HHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHh
Confidence            1111          2344555555655 458899999999988863

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=98.16  E-value=0.0014  Score=64.00  Aligned_cols=304  Identities=15%  Similarity=0.178  Sum_probs=177.5

Q ss_pred             HHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcChhhhhhhhHHHHHHhcCC-CChHHHHHHHHHHHHHHHHhCCCc---
Q 009975          135 TDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQD-KSWRVRYMVANQLYELCEAVGPEP---  210 (521)
Q Consensus       135 ~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d-~~~~vR~~~~~~l~~i~~~~~~~~---  210 (521)
                      +.+-.+..++.+..-..-|+.|+..|..+++..+.+....-+-+++..+-+| .+.++=+.+.+.+..+...-+.+.   
T Consensus        21 etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y~~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~  100 (651)
T 3grl_A           21 ETIQKLCDRVASSTLLDDRRNAVRALKSLSKKYRLEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEE  100 (651)
T ss_dssp             HHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTTTTHHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC-------
T ss_pred             hHHHHHHHHHhhccchhHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccc
Confidence            3444444455555555667778887877776654432222233333333333 344444445555543322111000   


Q ss_pred             ------------------cccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHH---HH--HhhhHHHHHhccCCcH
Q 009975          211 ------------------TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPEL---AI--QHILPCVKELSSDSSQ  267 (521)
Q Consensus       211 ------------------~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~---~~--~~~~~~l~~~~~d~~~  267 (521)
                                        ..++-++.+..+++.++..+|..++..|..++..-+...   +.  +.-++.+..+++|+..
T Consensus       101 ~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE  180 (651)
T 3grl_A          101 NSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSRE  180 (651)
T ss_dssp             -------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSH
T ss_pred             cccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchH
Confidence                              024568888999999999999999999999988754421   11  2357888999999999


Q ss_pred             HHHHHHHHHHHccccccC---hHHHHHhHHHHHHHhhcCCCh----HHHHHHHHHHHHhhhhhc--hhhHh-hhHHHHHH
Q 009975          268 HVRSALASVIMGMAPLLG---KDATIEQLLPIFLSLLKDEFP----DVRLNIISKLDQVNQVIG--IDLLS-QSLLPAIV  337 (521)
Q Consensus       268 ~vr~~~~~~l~~i~~~~~---~~~~~~~l~~~l~~~l~d~~~----~vr~~a~~~l~~~~~~~~--~~~~~-~~~~~~l~  337 (521)
                      .+|..++-.+..+...-.   +-...+..++.++.+++++..    .|...++..+..+.+.=.  ...+. ...+|.+.
T Consensus       181 ~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~  260 (651)
T 3grl_A          181 VIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMK  260 (651)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGG
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHH
Confidence            999999999988875432   222345678888888876654    777778888887765421  11121 23344444


Q ss_pred             HHhcC----CChHHH--H---HHHHHhHHHHhhhCh---------hhhHHHHHHHHHHHcCCC--cHHHHHHHHHHHHHH
Q 009975          338 ELAED----RHWRVR--L---AIIEYIPLLASQLGV---------GFFDDKLGALCMQWLQDK--VYSIRDAAANNLKRL  397 (521)
Q Consensus       338 ~~~~~----~~~~vr--~---~~~~~l~~l~~~~~~---------~~~~~~l~~~l~~~l~d~--~~~vr~~a~~~l~~l  397 (521)
                      .+++.    ..|.-+  .   .++..+..+...-++         ..+...+++.+.+++..+  ...+|..|+.+++.+
T Consensus       261 ~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~  340 (651)
T 3grl_A          261 PWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEV  340 (651)
T ss_dssp             GGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHH
T ss_pred             HHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHH
Confidence            44431    234321  1   233344444332221         112223556666665433  577999999999988


Q ss_pred             HHHhCH--HHHH----------hhhHHHHHhhhcCc-chHHHHHHHHHHHHhhc
Q 009975          398 AEEFGP--EWAM----------QHITPQVLEMINNP-HYLYRMTILRAISLLAP  438 (521)
Q Consensus       398 ~~~~~~--~~~~----------~~l~~~l~~~l~~~-~~~~r~~a~~~l~~l~~  438 (521)
                      +.....  +.+.          ..++..+..++++. ...+|.+++.++..+..
T Consensus       341 irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~  394 (651)
T 3grl_A          341 IRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLY  394 (651)
T ss_dssp             HTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHT
T ss_pred             HhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHh
Confidence            753311  1111          12444455556554 48899999999998874

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=98.13  E-value=0.00022  Score=61.20  Aligned_cols=186  Identities=15%  Similarity=0.091  Sum_probs=113.3

Q ss_pred             HHHHHHHhcCCCh--HHHHHHHHHhHHHHhhhCh---hhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhC---HH
Q 009975          333 LPAIVELAEDRHW--RVRLAIIEYIPLLASQLGV---GFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFG---PE  404 (521)
Q Consensus       333 ~~~l~~~~~~~~~--~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~---~~  404 (521)
                      +|.+.+++.++++  .++..++..+..++..-..   .......+|.+..+|+.++.+++..|+.+|..+.....   ..
T Consensus        10 i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~~   89 (233)
T 3tt9_A           10 LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLE   89 (233)
T ss_dssp             HHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHH
Confidence            4555555555444  5555555555544432111   11122356788888888888888888888888864211   11


Q ss_pred             HHHhhhHHHHHhhhc-CcchHHHHHHHHHHHHhhcccC-hHHHhhcHHHHHHhhcC-------C---------CCchHHH
Q 009975          405 WAMQHITPQVLEMIN-NPHYLYRMTILRAISLLAPVMG-SEITCSRLLPVVINASK-------D---------RVPNIKF  466 (521)
Q Consensus       405 ~~~~~l~~~l~~~l~-~~~~~~r~~a~~~l~~l~~~~~-~~~~~~~il~~l~~~l~-------d---------~~~~VR~  466 (521)
                      ......+|.|.+++. .+++.+++.++.++..++..-. ...+...-+|.+..++.       +         .++.|+.
T Consensus        90 I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v~~  169 (233)
T 3tt9_A           90 VAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFY  169 (233)
T ss_dssp             HHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHHHH
T ss_pred             HHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhccHHHHHHHHhccccCCcccccccccccchHHHHH
Confidence            123456888888886 4678888888888888875322 22233345666665432       1         2568999


Q ss_pred             HHHHHHHHHHhhh--chHHHH--hhHHHHHHHhc------CCCCccHHHHHHHHHHHHHHhh
Q 009975          467 NVAKVLQSLIPIV--DQSMVE--KTIRPCLVELT------EDPDVDVRFFATQAIQSIDHVM  518 (521)
Q Consensus       467 ~a~~~l~~~~~~~--~~~~~~--~~~~~~l~~l~------~D~~~~vr~~a~~al~~l~~~~  518 (521)
                      +|..+|..+...-  ....+.  .-+.+.|..++      .+.+...+.++..+|..|...+
T Consensus       170 na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~~  231 (233)
T 3tt9_A          170 NVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQL  231 (233)
T ss_dssp             HHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCCC
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhhh
Confidence            9999999987631  122222  23555555542      4457788899999998887654

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=98.11  E-value=0.0066  Score=61.88  Aligned_cols=185  Identities=12%  Similarity=0.124  Sum_probs=103.4

Q ss_pred             hhhhHHhhhhcCchhHHHHHHHHHHHHHHhhcChhH--HHHh-HHHHHHHhhcCCCCcchhhhhhhhhhhcCCCChHHH-
Q 009975           20 VLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESD--LVDW-YIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILK-   95 (521)
Q Consensus        20 ~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~--~~~~-l~p~i~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~-   95 (521)
                      .++|+++++ .++++..|..|+.++..+++.-....  ..+. +.+.+..+..|.+.++|..+.+.+..+......+.. 
T Consensus        35 ~i~Pll~~L-~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~  113 (684)
T 4gmo_A           35 KILPVLKDL-KSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCV  113 (684)
T ss_dssp             TTHHHHHHH-SSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred             hHHHHHHHc-CCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHH
Confidence            578888774 56899999999999999997422221  2233 446677778888889999999988877654433322 


Q ss_pred             ----HHHHHHHHHhcCC---------C-----Ch-------HHHHHHHHhHHHHHHhhCc---hhhHHHHHHHHHH-hhc
Q 009975           96 ----TELRSIYTQLCQD---------D-----MP-------MVRRSAASNLGKFAATVEP---AHLKTDIMSIFED-LTQ  146 (521)
Q Consensus        96 ----~~l~~~l~~l~~~---------~-----~~-------~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~-l~~  146 (521)
                          ..+++.+..++..         .     ..       .+-..++..|..++.....   .......++.+.. +..
T Consensus       114 ~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~  193 (684)
T 4gmo_A          114 HLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLIS  193 (684)
T ss_dssp             HHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHh
Confidence                2244544443311         0     11       1222344444555433221   1112233444433 333


Q ss_pred             CC--ChhHHHHHHHHHHHHhhhcChh------hhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHh
Q 009975          147 DD--QDSVRLLAVEGCAALGKLLEPQ------DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAV  206 (521)
Q Consensus       147 d~--~~~vr~~a~~~l~~l~~~~~~~------~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~  206 (521)
                      .+  ...++..|..+|..+.+.-.+-      .....++..+....++.+.. |..++-.+..+....
T Consensus       194 ~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~~~~~-~~la~giL~Ni~~~~  260 (684)
T 4gmo_A          194 ADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATGTDPR-AVMACGVLHNVFTSL  260 (684)
T ss_dssp             HCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHSSCTT-HHHHHHHHHHHHHHH
T ss_pred             cCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcCCcHH-HHHHHHHHHhHhhhh
Confidence            22  3578999999999987653220      11123455555555554443 445555555555443

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=97.88  E-value=0.00025  Score=60.91  Aligned_cols=145  Identities=14%  Similarity=0.062  Sum_probs=104.6

Q ss_pred             HHHHHHHHcCCCcH--HHHHHHHHHHHHHHHHhCH---HHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccC---h
Q 009975          371 LGALCMQWLQDKVY--SIRDAAANNLKRLAEEFGP---EWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMG---S  442 (521)
Q Consensus       371 l~~~l~~~l~d~~~--~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~---~  442 (521)
                      -+|.+.++|+.+++  .++..|+.++..++..-..   .......+|.|.+++.+++..++..|++++..++..-.   .
T Consensus         9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~   88 (233)
T 3tt9_A            9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKL   88 (233)
T ss_dssp             CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence            35777888887777  8888888888887753221   12335578999999999999999999999999986211   1


Q ss_pred             HHHhhcHHHHHHhhcC-CCCchHHHHHHHHHHHHHhhhc-hHHHHhhHHHHHHHhcC-------C---------CCccHH
Q 009975          443 EITCSRLLPVVINASK-DRVPNIKFNVAKVLQSLIPIVD-QSMVEKTIRPCLVELTE-------D---------PDVDVR  504 (521)
Q Consensus       443 ~~~~~~il~~l~~~l~-d~~~~VR~~a~~~l~~~~~~~~-~~~~~~~~~~~l~~l~~-------D---------~~~~vr  504 (521)
                      ......-+|.++++|. .++..++..++.+|..+...-. ...+...-+|.|..+..       |         .+.+|+
T Consensus        89 ~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v~  168 (233)
T 3tt9_A           89 EVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIF  168 (233)
T ss_dssp             HHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHHH
T ss_pred             HHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhccHHHHHHHHhccccCCcccccccccccchHHHH
Confidence            1233567899999997 4788999999999988875322 22233345666665431       1         366999


Q ss_pred             HHHHHHHHHHH
Q 009975          505 FFATQAIQSID  515 (521)
Q Consensus       505 ~~a~~al~~l~  515 (521)
                      .+|..++..|.
T Consensus       169 ~na~~~L~nLs  179 (233)
T 3tt9_A          169 YNVTGCLRNMS  179 (233)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHh
Confidence            99999998875

>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1

Probab=97.44  E-value=0.018  Score=61.62  Aligned_cols=170  Identities=9%  Similarity=0.022  Sum_probs=108.2

Q ss_pred             hhHHHHHHhcCC----CChHHHHHHHHHHHHHHHHhCCC--cc----ccchHHHHHHhcCCChHHHHHHHHHhHHHHHhh
Q 009975          175 HILPVIVNFSQD----KSWRVRYMVANQLYELCEAVGPE--PT----RMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRI  244 (521)
Q Consensus       175 ~l~~~l~~~~~d----~~~~vR~~~~~~l~~i~~~~~~~--~~----~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~  244 (521)
                      ..+..+..++++    .++.+|..+.-+++.++.....+  ..    ...+...+.+.+...+.+-+..++++|++++.-
T Consensus       391 e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p  470 (1056)
T 1lsh_A          391 ESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQP  470 (1056)
T ss_dssp             HHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCG
T ss_pred             HHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCh
Confidence            344445555544    56789999999999998754321  11    233444455555666677788899999998762


Q ss_pred             hCHHHHHHhhhHHHHHhc-------cCCcHHHHHHHHHHHHccccccChHHHHHhHHHHHHHhh--cCCChHHHHHHHHH
Q 009975          245 LNPELAIQHILPCVKELS-------SDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLL--KDEFPDVRLNIISK  315 (521)
Q Consensus       245 ~~~~~~~~~~~~~l~~~~-------~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l--~d~~~~vr~~a~~~  315 (521)
                              ..++.+..++       .+...++|.+|+.++..+....     .+.+.+.+.+.+  .+.++++|..|+..
T Consensus       471 --------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~-----p~~v~~il~~i~~n~~e~~EvRiaA~~~  537 (1056)
T 1lsh_A          471 --------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRD-----PRKVQEIVLPIFLNVAIKSELRIRSCIV  537 (1056)
T ss_dssp             --------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTC-----HHHHHHHHHHHHHCTTSCHHHHHHHHHH
T ss_pred             --------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhc-----hHHHHHHHHHHhcCCCCChHHHHHHHHH
Confidence                    2233444433       2345689999999999887432     233556666666  55679999999888


Q ss_pred             HHHhhhhhchhhHhhhHHHHHHH-HhcCCChHHHHHHHHHhHHHHhhhCh
Q 009975          316 LDQVNQVIGIDLLSQSLLPAIVE-LAEDRHWRVRLAIIEYIPLLASQLGV  364 (521)
Q Consensus       316 l~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~vr~~~~~~l~~l~~~~~~  364 (521)
                      +-.....       ..++..+.. +..+++..|+..+...|..+++.-.+
T Consensus       538 Lm~t~P~-------~~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~~P  580 (1056)
T 1lsh_A          538 FFESKPS-------VALVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNP  580 (1056)
T ss_dssp             HHHTCCC-------HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSG
T ss_pred             HHHHCcC-------HHHHHHHHHHHhhCchHHHHHHHHHHHHHHHhcCCc
Confidence            8654432       223444444 33567888888877777777665443

>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1

Probab=97.38  E-value=0.0084  Score=64.13  Aligned_cols=132  Identities=11%  Similarity=-0.026  Sum_probs=86.6

Q ss_pred             hhHHHHHHHHhcC----CChHHHHHHHHHhHHHHhhhC------hhhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Q 009975          330 QSLLPAIVELAED----RHWRVRLAIIEYIPLLASQLG------VGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAE  399 (521)
Q Consensus       330 ~~~~~~l~~~~~~----~~~~vr~~~~~~l~~l~~~~~------~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~  399 (521)
                      ...+..+..++++    .++.+|..++-+++.++...-      .....+.+...+.+.+...+.+-+..++++||.+..
T Consensus       390 ~e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~  469 (1056)
T 1lsh_A          390 RESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ  469 (1056)
T ss_dssp             HHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCC
Confidence            3455555555544    467788888888888775431      112245566666677777777888888888887642


Q ss_pred             HhCHHHHHhhhHHHHHhhhcC-------cchHHHHHHHHHHHHhhcccChHHHhhcHHHHHHhhc--CCCCchHHHHHHH
Q 009975          400 EFGPEWAMQHITPQVLEMINN-------PHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINAS--KDRVPNIKFNVAK  470 (521)
Q Consensus       400 ~~~~~~~~~~l~~~l~~~l~~-------~~~~~r~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l--~d~~~~VR~~a~~  470 (521)
                              ...++.+.+++..       ...++|.+|+.++..+....     ...+-+.+++.+  .+..++||.+|+.
T Consensus       470 --------p~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~-----p~~v~~il~~i~~n~~e~~EvRiaA~~  536 (1056)
T 1lsh_A          470 --------PNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRD-----PRKVQEIVLPIFLNVAIKSELRIRSCI  536 (1056)
T ss_dssp             --------GGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTC-----HHHHHHHHHHHHHCTTSCHHHHHHHHH
T ss_pred             --------hhHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhc-----hHHHHHHHHHHhcCCCCChHHHHHHHH
Confidence                    2355666666532       24589999999999987532     123455566665  4468899999988


Q ss_pred             HHHH
Q 009975          471 VLQS  474 (521)
Q Consensus       471 ~l~~  474 (521)
                      .|-.
T Consensus       537 ~Lm~  540 (1056)
T 1lsh_A          537 VFFE  540 (1056)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8744

>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*

Probab=97.34  E-value=0.07  Score=49.12  Aligned_cols=200  Identities=13%  Similarity=0.111  Sum_probs=125.2

Q ss_pred             HHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChhhhHH
Q 009975          290 IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDD  369 (521)
Q Consensus       290 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~  369 (521)
                      .+.++..+...-...+ +.+...+..+..++-.-.++.+ +.++|.+.++..|++..+|..+++.+...+..  ...+..
T Consensus        24 ~~~v~~lln~A~~~~~-~~Kl~~L~q~~EL~l~~dpsLl-~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~--~~el~~   99 (386)
T 3o2t_A           24 SERVVDLLNQAALITN-DSKITVLKQVQELIINKDPTLL-DNFLDEIIAFQADKSIEVRKFVIGFIEEACKR--DIELLL   99 (386)
T ss_dssp             HHHHHHHHHHHHHCCS-THHHHHHHHHHHHHHTTCGGGG-GGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH--CGGGHH
T ss_pred             HHHHHHHHHhhhccCh-HHHHHHHHHHHHHHhccCHHHH-HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH--HHHHHH
Confidence            3444454444333333 3566666666665443344433 78888888888888888888888888777753  233356


Q ss_pred             HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHh--------C------HHHH-HhhhHHHHHhhhcCcchHHHHHHHHHHH
Q 009975          370 KLGALCMQWLQDKVYSIRDAAANNLKRLAEEF--------G------PEWA-MQHITPQVLEMINNPHYLYRMTILRAIS  434 (521)
Q Consensus       370 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~--------~------~~~~-~~~l~~~l~~~l~~~~~~~r~~a~~~l~  434 (521)
                      .+++.+..+++|.++.|.+.++.+...++...        +      ..|- ...+-..+.....+.+..+|..++.++.
T Consensus       100 ~~l~~L~~LL~d~d~~V~K~~I~~~tslYpl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle  179 (386)
T 3o2t_A          100 KLIANLNMLLRDENVNVVKKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVE  179 (386)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHH
Confidence            77888888888888888888888777776322        1      1111 2334445556667788999999999999


Q ss_pred             HhhcccChH------------H--------------------HhhcHHHHHHhhcCCC--CchHHHHHHHHHHHHHhhhc
Q 009975          435 LLAPVMGSE------------I--------------------TCSRLLPVVINASKDR--VPNIKFNVAKVLQSLIPIVD  480 (521)
Q Consensus       435 ~l~~~~~~~------------~--------------------~~~~il~~l~~~l~d~--~~~VR~~a~~~l~~~~~~~~  480 (521)
                      .++......            .                    -...++..++..+.++  ++..=.+++++|..++..  
T Consensus       180 ~VIl~qS~~~~d~~~p~~~~~d~SL~~VP~nHp~L~~~~Le~EA~~lLd~LL~~l~~~~iss~~l~a~lnsLa~Iak~--  257 (386)
T 3o2t_A          180 GLIVTLSPRMADSEIPRRQEHDISLDRIPRDHPYIQYNVLWEEGKAALEQLLKFMVHPAISSINLTTALGSLANIARQ--  257 (386)
T ss_dssp             HHHHHTSCCCTTCCCCGGGTTSCCGGGSCTTCSSSCHHHHHHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHHHHHH--
T ss_pred             HHHHHhCCCCCCcccccccCCCCCHhhCCCCCCcCCHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHh--
Confidence            887422100            0                    0135667777777653  333344667777777763  


Q ss_pred             hHHHHhhHHHHHHHh
Q 009975          481 QSMVEKTIRPCLVEL  495 (521)
Q Consensus       481 ~~~~~~~~~~~l~~l  495 (521)
                      .+.+...+++.+..+
T Consensus       258 RP~~~~rIl~aL~~l  272 (386)
T 3o2t_A          258 RPMFMSEVIQAYETL  272 (386)
T ss_dssp             SGGGHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhh
Confidence            233456777777765

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=97.04  E-value=0.0097  Score=60.67  Aligned_cols=87  Identities=14%  Similarity=0.135  Sum_probs=43.9

Q ss_pred             HHHHHHHHHhhcccCh---HHHhhcHHHHHHhhcCC---CCchHHHHHHHHHHHHHhhhchH--HHH----hhHHHHHHH
Q 009975          427 MTILRAISLLAPVMGS---EITCSRLLPVVINASKD---RVPNIKFNVAKVLQSLIPIVDQS--MVE----KTIRPCLVE  494 (521)
Q Consensus       427 ~~a~~~l~~l~~~~~~---~~~~~~il~~l~~~l~d---~~~~VR~~a~~~l~~~~~~~~~~--~~~----~~~~~~l~~  494 (521)
                      ..++.++..++..-..   .......+|.++..+.+   ....++..++.+|..+......-  .+.    ..+...+..
T Consensus       158 ~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~  237 (684)
T 4gmo_A          158 GSLLVLIGLLALARDEIHEAVATKQTILRLLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLK  237 (684)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHH
Confidence            3445555555542211   11223456666665532   24579999999999987642210  111    234444444


Q ss_pred             hcCCCCccHHHHHHHHHHHH
Q 009975          495 LTEDPDVDVRFFATQAIQSI  514 (521)
Q Consensus       495 l~~D~~~~vr~~a~~al~~l  514 (521)
                      +.++.+.. |..++..+..+
T Consensus       238 ~~~~~~~~-~~la~giL~Ni  256 (684)
T 4gmo_A          238 LATGTDPR-AVMACGVLHNV  256 (684)
T ss_dssp             HHHSSCTT-HHHHHHHHHHH
T ss_pred             HhcCCcHH-HHHHHHHHHhH
Confidence            44444433 44555555444

>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}

Probab=96.97  E-value=0.16  Score=44.04  Aligned_cols=129  Identities=14%  Similarity=0.222  Sum_probs=76.9

Q ss_pred             HHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChhhhHHHHHHHHHHHcCCCcHHH
Q 009975          307 DVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSI  386 (521)
Q Consensus       307 ~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~v  386 (521)
                      +.+...+.....++-.-.+. +.+.+++.+.++..+++..+|..+++.+...++.  +..+....++.+..+++|+++.|
T Consensus        30 ~~kl~~L~qa~el~~~~dp~-ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~--k~~l~~~~l~~L~~Ll~d~d~~V  106 (257)
T 3gs3_A           30 STKCELLAKVQETVLGSCAE-LAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKV--KVELLPHVINVVSMLLRDNSAQV  106 (257)
T ss_dssp             HHHHHHHHHHHHHHTTTTGG-GHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHTTCSCHHH
T ss_pred             HHHHHHHHHHHHHHHccCHh-HHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHcCCCHHH
Confidence            45555555555543332333 3356666666666667777777777776666533  23345566677777777777777


Q ss_pred             HHHHHHHHHHHHHHh-------CH-------HH-HHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhc
Q 009975          387 RDAAANNLKRLAEEF-------GP-------EW-AMQHITPQVLEMINNPHYLYRMTILRAISLLAP  438 (521)
Q Consensus       387 r~~a~~~l~~l~~~~-------~~-------~~-~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~  438 (521)
                      .+.++.+...++...       +.       .| ....+-..+.....+.+..+|..++.++..+..
T Consensus       107 ~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vIl  173 (257)
T 3gs3_A          107 IKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVVV  173 (257)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHH
Confidence            777776666665422       10       11 113344445556667788888888888888774

>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*

Probab=96.96  E-value=0.23  Score=45.71  Aligned_cols=112  Identities=13%  Similarity=0.085  Sum_probs=65.8

Q ss_pred             HHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhc------
Q 009975           94 LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLL------  167 (521)
Q Consensus        94 ~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~------  167 (521)
                      ...++++.+.++..+.+..||+..+.-|...+..  ..+....+++.+..++.|++..|.+.++.+...+.+..      
T Consensus        60 Ll~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~--~~el~~~~l~~L~~LL~d~d~~V~K~~I~~~tslYpl~f~~i~~  137 (386)
T 3o2t_A           60 LLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKR--DIELLLKLIANLNMLLRDENVNVVKKAILTMTQLYKVALQWMVK  137 (386)
T ss_dssp             GGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3455666666666666666666666666665542  22334555666666666666666666665555554321      


Q ss_pred             -Ch-----hhhhhh---hHHHHHHhcCCCChHHHHHHHHHHHHHHHHhC
Q 009975          168 -EP-----QDCVAH---ILPVIVNFSQDKSWRVRYMVANQLYELCEAVG  207 (521)
Q Consensus       168 -~~-----~~~~~~---l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~  207 (521)
                       +.     +..|..   +...+....++.+..||-.+++.+..++-...
T Consensus       138 ~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VIl~qS  186 (386)
T 3o2t_A          138 SRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLIVTLS  186 (386)
T ss_dssp             C-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHTS
T ss_pred             CCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHhC
Confidence             00     122222   33445556677888999999998888876543

>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}

Probab=96.59  E-value=0.31  Score=42.15  Aligned_cols=114  Identities=14%  Similarity=0.145  Sum_probs=82.8

Q ss_pred             hHHHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhc----
Q 009975           92 DILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLL----  167 (521)
Q Consensus        92 ~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~----  167 (521)
                      +....++++.+..+..+.+..+|+..+.-+...+..  ........++.+..+++|+++.|.+.++.+...+.+..    
T Consensus        48 p~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~--k~~l~~~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~~~l~~i  125 (257)
T 3gs3_A           48 AELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKV--KVELLPHVINVVSMLLRDNSAQVIKRVIQACGSIYKNGLQYL  125 (257)
T ss_dssp             GGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            345778888888888888888999888888877643  34567778888888888888888888888777765542    


Q ss_pred             ---Ch-----hhhhhh---hHHHHHHhcCCCChHHHHHHHHHHHHHHHHhC
Q 009975          168 ---EP-----QDCVAH---ILPVIVNFSQDKSWRVRYMVANQLYELCEAVG  207 (521)
Q Consensus       168 ---~~-----~~~~~~---l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~  207 (521)
                         +.     +..|..   +...+....++.+..+|-.+++-+..++-...
T Consensus       126 ~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vIl~qT  176 (257)
T 3gs3_A          126 CSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVVVLQS  176 (257)
T ss_dssp             TTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHHHHTS
T ss_pred             hcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHhhc
Confidence               11     223332   44456666778899999999999988875443

>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}

Probab=96.58  E-value=0.15  Score=41.85  Aligned_cols=142  Identities=12%  Similarity=0.138  Sum_probs=90.6

Q ss_pred             HHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHhcC------CChHHHHHHHHHhHHHHhh--hChhhhHHHHHHHHHHH
Q 009975          307 DVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAED------RHWRVRLAIIEYIPLLASQ--LGVGFFDDKLGALCMQW  378 (521)
Q Consensus       307 ~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~------~~~~vr~~~~~~l~~l~~~--~~~~~~~~~l~~~l~~~  378 (521)
                      ..|..|++++..-.   |.    ..++|.+..++.+      .+...-...++....+..+  +.-+.+...++|.++++
T Consensus        23 ~~r~~aL~sL~~D~---gL----~~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l~lepYlH~LipsvLtC   95 (196)
T 4atg_A           23 DMKDIAIECLEKES---GL----QQLVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTC   95 (196)
T ss_dssp             TTHHHHHHHHHHCS---SC----TTTHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCC---Ch----hhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHH
Confidence            34666666665532   21    4566666654422      2445445555555555544  23456777788888877


Q ss_pred             cCC---CcHHHHHHHHHHHHHHHHHhCH--HHHHhhhHHHHHhhhcCc--chHHHHHHHHHHHHhhcccChHHHhhcHHH
Q 009975          379 LQD---KVYSIRDAAANNLKRLAEEFGP--EWAMQHITPQVLEMINNP--HYLYRMTILRAISLLAPVMGSEITCSRLLP  451 (521)
Q Consensus       379 l~d---~~~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~~~--~~~~r~~a~~~l~~l~~~~~~~~~~~~il~  451 (521)
                      +-.   ....+|..|+..++.++..+|.  ......+...+.+.+.|+  +...+..|+..+..+    |.+.+..-++|
T Consensus        96 ll~k~l~~~~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~l----G~~~vr~~llP  171 (196)
T 4atg_A           96 VIGKSIVDDDVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSIL----SKNVVNTVIRE  171 (196)
T ss_dssp             HHCTTCCCHHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH----CHHHHHTHHHH
T ss_pred             HHhcccCHHHHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHh----HHHHHHHhhhc
Confidence            521   1228999999999999999876  334566777777777665  467778888887766    55666666667


Q ss_pred             HHHhhcCC
Q 009975          452 VVINASKD  459 (521)
Q Consensus       452 ~l~~~l~d  459 (521)
                      .+-...++
T Consensus       172 ~l~~~~~~  179 (196)
T 4atg_A          172 HAEEYKRT  179 (196)
T ss_dssp             HHHHHHHH
T ss_pred             CHHHHHHH
Confidence            77655543

>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}

Probab=95.25  E-value=0.92  Score=37.15  Aligned_cols=158  Identities=12%  Similarity=0.045  Sum_probs=90.8

Q ss_pred             HHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCC--ChhHHHHHHHHHHHHhhh--cChh
Q 009975           95 KTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDD--QDSVRLLAVEGCAALGKL--LEPQ  170 (521)
Q Consensus        95 ~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~--~~~vr~~a~~~l~~l~~~--~~~~  170 (521)
                      .+..+..+.+.+.+   ..|+.|.+.|..   .-+-....+.+..++.+.....  +...-...+++..++..+  +.-+
T Consensus         9 lq~yf~~It~a~~~---~~r~~aL~sL~~---D~gL~~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l~le   82 (196)
T 4atg_A            9 LQLYFDKILSMIKS---DMKDIAIECLEK---ESGLQQLVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHVFID   82 (196)
T ss_dssp             HHHHHHHHHHHHTS---TTHHHHHHHHHH---CSSCTTTHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTCCCG
T ss_pred             HHHHHHHHHHHHHh---HHHHHHHHHHhc---CCChhhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCChH
Confidence            44555566655554   457666655543   3332334444444444333222  333334445555555544  2224


Q ss_pred             hhhhhhHHHHHHhcC--C-CChHHHHHHHHHHHHHHHHhCCCc--cccchHHHHHHhcCCCh--HHHHHHHHHhHHHHHh
Q 009975          171 DCVAHILPVIVNFSQ--D-KSWRVRYMVANQLYELCEAVGPEP--TRMDLVPAYVRLLRDNE--AEVRIAAAGKVTKFCR  243 (521)
Q Consensus       171 ~~~~~l~~~l~~~~~--d-~~~~vR~~~~~~l~~i~~~~~~~~--~~~~l~~~l~~~l~d~~--~~vr~~a~~~l~~l~~  243 (521)
                      .+...++|.+..++-  . ....+|..+++.++.+++.++...  ..+.+...+.+.+.|++  ......|+..|..+  
T Consensus        83 pYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~l--  160 (196)
T 4atg_A           83 PYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSIL--  160 (196)
T ss_dssp             GGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHh--
Confidence            566677777766442  1 122799999999999999888642  23566677777777754  56677777777665  


Q ss_pred             hhCHHHHHHhhhHHHHHhc
Q 009975          244 ILNPELAIQHILPCVKELS  262 (521)
Q Consensus       244 ~~~~~~~~~~~~~~l~~~~  262 (521)
                        |++.+...++|.+....
T Consensus       161 --G~~~vr~~llP~l~~~~  177 (196)
T 4atg_A          161 --SKNVVNTVIREHAEEYK  177 (196)
T ss_dssp             --CHHHHHTHHHHHHHHHH
T ss_pred             --HHHHHHHhhhcCHHHHH
Confidence              44555455667765554

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=94.96  E-value=1.9  Score=38.48  Aligned_cols=205  Identities=12%  Similarity=0.147  Sum_probs=131.3

Q ss_pred             HHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhh-chh-----hH--hhhHHHHHHHHhcCCChHHHHHHHHHhHHHHh
Q 009975          289 TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI-GID-----LL--SQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS  360 (521)
Q Consensus       289 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~-~~~-----~~--~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~  360 (521)
                      +.++++..+...+..-+.+.|+.+...+..+...- |..     -+  ...++..+....++++-..      ..|.+..
T Consensus        75 ~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~diAl------~~G~mLR  148 (341)
T 1upk_A           75 YNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIAL------NCGIMLR  148 (341)
T ss_dssp             HHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHH------HHHHHHH
T ss_pred             HHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccchhHh------HHHHHHH
Confidence            35677888888888888888888888877765431 110     00  1344555555444433211      1122221


Q ss_pred             hh-ChhhhHHHH-----HHHHHHHcCCCcHHHHHHHHHHHHHHHHHh---CHHHH---HhhhHHHHHhhhcCcchHHHHH
Q 009975          361 QL-GVGFFDDKL-----GALCMQWLQDKVYSIRDAAANNLKRLAEEF---GPEWA---MQHITPQVLEMINNPHYLYRMT  428 (521)
Q Consensus       361 ~~-~~~~~~~~l-----~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~---~~~~~---~~~l~~~l~~~l~~~~~~~r~~  428 (521)
                      .+ .-+.+...+     .--++.+++.++.+|-.-|+..+..+....   -.+++   -+.++..+..++.++||-.|..
T Consensus       149 ecir~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQ  228 (341)
T 1upk_A          149 ECIRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQ  228 (341)
T ss_dssp             HHHTSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHH
T ss_pred             HHHHhHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHH
Confidence            11 111112222     224567888999999888888888776432   11222   1456777788999999999999


Q ss_pred             HHHHHHHhhcccChHHH------hhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhch-H-------HHHhhHHHHHHH
Q 009975          429 ILRAISLLAPVMGSEIT------CSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ-S-------MVEKTIRPCLVE  494 (521)
Q Consensus       429 a~~~l~~l~~~~~~~~~------~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~-~-------~~~~~~~~~l~~  494 (521)
                      ++..+|.+...=....+      .+.-+..++.+|+|+..+|+..|..++..++..-.. +       ...+.++..+.+
T Consensus       229 SlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K~~~I~~IL~~Nr~kLl~fl~~  308 (341)
T 1upk_A          229 SLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQAKLIEFLSK  308 (341)
T ss_dssp             HHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHTHHHHHHHHHH
T ss_pred             HHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCCChHHHHHHHHHHHHHHHHHHh
Confidence            99999999852111111      256788899999999999999999999988753211 1       123778888888


Q ss_pred             hcCCC
Q 009975          495 LTEDP  499 (521)
Q Consensus       495 l~~D~  499 (521)
                      +..|+
T Consensus       309 f~~d~  313 (341)
T 1upk_A          309 FQNDR  313 (341)
T ss_dssp             TTTTC
T ss_pred             CCCCC
Confidence            88887

>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0

Probab=94.62  E-value=0.33  Score=37.64  Aligned_cols=76  Identities=9%  Similarity=0.083  Sum_probs=59.6

Q ss_pred             HhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChHHH----hhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchH
Q 009975          407 MQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEIT----CSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS  482 (521)
Q Consensus       407 ~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~----~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~  482 (521)
                      ....+..+...++++++.+...|+..+..+.+.+|..+.    ...++..+..++...++.||...+..+......+..+
T Consensus        40 ~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~f~~~  119 (140)
T 3ldz_A           40 PKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDEFKND  119 (140)
T ss_dssp             HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhCCC
Confidence            455677788888888889999999999999998887654    2567777777776678899999999998888776543

>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17

Probab=93.48  E-value=2.9  Score=35.28  Aligned_cols=132  Identities=6%  Similarity=-0.031  Sum_probs=89.8

Q ss_pred             HHHHHhhcCCChhHHHHHHHHHHHHhhhcChhhhhhhhHHHHHHhcC-CCChHHHHHHHHHHHHHHHHhCCCccccchHH
Q 009975          139 SIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGPEPTRMDLVP  217 (521)
Q Consensus       139 ~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~-d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~  217 (521)
                      .++..+..++....|..|+..+......+.+     .-++.+..++. -.+|.+--..+.+++.+...     .+..+.+
T Consensus        58 ~~~~~L~~s~~~E~r~la~~~l~~~~~~~~~-----~~l~~~~~~l~~~~nWd~~D~~a~~~~~~~~~-----~~~~~~~  127 (220)
T 2b6c_A           58 QEIEAYYQKTEREYQYVAIDLALQNVQRFSL-----EEVVAFKAYVPQKAWWDSVDAWRKFFGSWVAL-----HLTELPT  127 (220)
T ss_dssp             HHHHHHHTSSSHHHHHHHHHHHHHTGGGCCH-----HHHHHGGGGTTTTCSHHHHHHHHHHHHHHHHH-----SGGGHHH
T ss_pred             HHHHHHHcCchhHHHHHHHHHHHHHHhhCCH-----HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH-----ChHHHHH
Confidence            5666677777788899998888876544332     33445555554 47888877777667766543     2334678


Q ss_pred             HHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhhhHHHHHhccCCcHHHHHHHHHHHHcccccc
Q 009975          218 AYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLL  284 (521)
Q Consensus       218 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~  284 (521)
                      .+.+...|++.-+|..|+.++-....    +...+.+++.+..+..|++..||.+..+++..++...
T Consensus       128 ~i~~W~~s~~~w~rR~ai~~~l~~~~----~~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~~  190 (220)
T 2b6c_A          128 IFALFYGAENFWNRRVALNLQLMLKE----KTNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKTN  190 (220)
T ss_dssp             HHHHHTTCSSHHHHHHHHHTTTTCGG----GCCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhC
Confidence            88889998888888777765522211    1122445677777889999999999999998887553

>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*

Probab=93.35  E-value=0.83  Score=35.70  Aligned_cols=75  Identities=15%  Similarity=0.124  Sum_probs=57.6

Q ss_pred             HhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChHHH----hhcHHHHHHhhcCC------CCchHHHHHHHHHHHHH
Q 009975          407 MQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEIT----CSRLLPVVINASKD------RVPNIKFNVAKVLQSLI  476 (521)
Q Consensus       407 ~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~----~~~il~~l~~~l~d------~~~~VR~~a~~~l~~~~  476 (521)
                      ....+..|...++++|+.+...|+..+..+.+.+|..+.    ...|+..+.+++.+      +.+.||...+..+....
T Consensus        46 pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~  125 (149)
T 3g2s_A           46 PPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWT  125 (149)
T ss_dssp             HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHH
Confidence            345666777778888888888888888888888887653    35677878877764      46789999999988888


Q ss_pred             hhhch
Q 009975          477 PIVDQ  481 (521)
Q Consensus       477 ~~~~~  481 (521)
                      ..++.
T Consensus       126 ~~f~~  130 (149)
T 3g2s_A          126 VGLPE  130 (149)
T ss_dssp             HHCTT
T ss_pred             HHhCC
Confidence            77643

>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B

Probab=92.80  E-value=0.92  Score=36.12  Aligned_cols=74  Identities=8%  Similarity=0.081  Sum_probs=53.1

Q ss_pred             hhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChHHH----hhcHHHHHHhhcCC-CCchHHHHHHHHHHHHHhhhch
Q 009975          408 QHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEIT----CSRLLPVVINASKD-RVPNIKFNVAKVLQSLIPIVDQ  481 (521)
Q Consensus       408 ~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~----~~~il~~l~~~l~d-~~~~VR~~a~~~l~~~~~~~~~  481 (521)
                      ...+..|.+.++++++.+...|+..+..+.+.+|..+.    ...++..+.+++.. .++.||..++..+......++.
T Consensus        51 keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~f~~  129 (163)
T 1x5b_A           51 KDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEEFQK  129 (163)
T ss_dssp             HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcC
Confidence            44556677777778888888888888888888776543    24566666665554 5678999998888888777654

>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17

Probab=92.32  E-value=4.2  Score=34.26  Aligned_cols=131  Identities=8%  Similarity=0.025  Sum_probs=75.8

Q ss_pred             HHHHHHhcCCChHHHHHHHHHhHHHHhhhChhhhHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHHHHhCHHHHHhhhHH
Q 009975          334 PAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQ-DKVYSIRDAAANNLKRLAEEFGPEWAMQHITP  412 (521)
Q Consensus       334 ~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~  412 (521)
                      ..+.++..++....|..++..+....+....     .-++.+..++. -++|++-...+.+++.++...     .+.+.+
T Consensus        58 ~~~~~L~~s~~~E~r~la~~~l~~~~~~~~~-----~~l~~~~~~l~~~~nWd~~D~~a~~~~~~~~~~-----~~~~~~  127 (220)
T 2b6c_A           58 QEIEAYYQKTEREYQYVAIDLALQNVQRFSL-----EEVVAFKAYVPQKAWWDSVDAWRKFFGSWVALH-----LTELPT  127 (220)
T ss_dssp             HHHHHHHTSSSHHHHHHHHHHHHHTGGGCCH-----HHHHHGGGGTTTTCSHHHHHHHHHHHHHHHHHS-----GGGHHH
T ss_pred             HHHHHHHcCchhHHHHHHHHHHHHHHhhCCH-----HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHC-----hHHHHH
Confidence            3444555666666777766666544333222     23344444443 466777666555565555432     233556


Q ss_pred             HHHhhhcCcchHHHHHHHHHHHHhhcccChHHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhh
Q 009975          413 QVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPI  478 (521)
Q Consensus       413 ~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~  478 (521)
                      .+.....|++..+|..++...  + .. ........+++.+-..+.|+..-||.+..++|..+...
T Consensus       128 ~i~~W~~s~~~w~rR~ai~~~--l-~~-~~~~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~  189 (220)
T 2b6c_A          128 IFALFYGAENFWNRRVALNLQ--L-ML-KEKTNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKT  189 (220)
T ss_dssp             HHHHHTTCSSHHHHHHHHHTT--T-TC-GGGCCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHcCCCHHHHHHHHHHH--H-HH-HHCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhh
Confidence            677777777755554444422  1 11 11222345677777788888888999888888888775

>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2

Probab=92.30  E-value=3.2  Score=32.31  Aligned_cols=75  Identities=16%  Similarity=0.125  Sum_probs=58.8

Q ss_pred             HhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChHHH----hhcHHHHHHhhcCC------CCchHHHHHHHHHHHHH
Q 009975          407 MQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEIT----CSRLLPVVINASKD------RVPNIKFNVAKVLQSLI  476 (521)
Q Consensus       407 ~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~----~~~il~~l~~~l~d------~~~~VR~~a~~~l~~~~  476 (521)
                      ....+..|...++++|+.+...|+..+..+.+.+|..+.    ...++..+.+++.+      ..+.||..++..+....
T Consensus        36 ~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~  115 (148)
T 1mhq_A           36 PTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWT  115 (148)
T ss_dssp             HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHH
Confidence            345666777778888999999999999999998887653    35788888887764      46789999999998888


Q ss_pred             hhhch
Q 009975          477 PIVDQ  481 (521)
Q Consensus       477 ~~~~~  481 (521)
                      ..++.
T Consensus       116 ~~f~~  120 (148)
T 1mhq_A          116 VWFPE  120 (148)
T ss_dssp             HHCTT
T ss_pred             HHcCC
Confidence            77654

>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*

Probab=91.98  E-value=2.5  Score=32.99  Aligned_cols=74  Identities=5%  Similarity=-0.012  Sum_probs=51.7

Q ss_pred             hhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChhhhH----HHHHHHHHHHcCC------CcHHHHHHHHHHHHHHHH
Q 009975          330 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD----DKLGALCMQWLQD------KVYSIRDAAANNLKRLAE  399 (521)
Q Consensus       330 ~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~----~~l~~~l~~~l~d------~~~~vr~~a~~~l~~l~~  399 (521)
                      ...+..+..-+.++++.+...++..+..+++++|..+..    ..++.-+..++.+      .+..||.-++..+..+..
T Consensus        47 k~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~  126 (149)
T 3g2s_A           47 PLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV  126 (149)
T ss_dssp             HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHH
Confidence            345566666667788888888888888888888875422    3455556666653      467888888888888887


Q ss_pred             HhCH
Q 009975          400 EFGP  403 (521)
Q Consensus       400 ~~~~  403 (521)
                      .++.
T Consensus       127 ~f~~  130 (149)
T 3g2s_A          127 GLPE  130 (149)
T ss_dssp             HCTT
T ss_pred             HhCC
Confidence            7754

>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*

Probab=91.71  E-value=5.3  Score=33.97  Aligned_cols=132  Identities=11%  Similarity=0.084  Sum_probs=76.1

Q ss_pred             HHHHHhhcCCChhHHHHHHHHHHHHhhhcChhhhhhhhHHHHHHhc-CCCChHHHHHHH-HHHHHHHHHhCCCccccchH
Q 009975          139 SIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFS-QDKSWRVRYMVA-NQLYELCEAVGPEPTRMDLV  216 (521)
Q Consensus       139 ~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~-~d~~~~vR~~~~-~~l~~i~~~~~~~~~~~~l~  216 (521)
                      .++..+..++....|..|+..+....+.+.++     -++.+..++ ...+|.+--..+ ..++.+...-     +..+.
T Consensus        64 ~~~~~L~~~~~~E~r~~ai~~l~~~~k~~~~~-----~l~~~~~~l~~~~nWd~~D~~a~~~~g~~~~~~-----p~~~~  133 (232)
T 3jxy_A           64 IIIRELWDLPEREFQAAALDIMQKYKKHINET-----HIPFLEELIVTKSWWDSVDSIVPTFLGDIFLKH-----PELIS  133 (232)
T ss_dssp             HHHHHHHTSSBHHHHHHHHHHHHHTGGGCCGG-----GHHHHHHHHTSSCCHHHHHHHTTTHHHHHHHHC-----GGGGG
T ss_pred             HHHHHHhcCcHHHHHHHHHHHHHHHHHhCCHH-----HHHHHHHHHccCCChHHHHHhhHHHHHHHHHHC-----HHHHH
Confidence            45556666666678888887776544443332     222333332 346777655553 4556655431     12255


Q ss_pred             HHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhhhHHHHHhccCCcHHHHHHHHHHHHcccccc
Q 009975          217 PAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLL  284 (521)
Q Consensus       217 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~  284 (521)
                      +.+.....|++..+|..|+..+-.......    ...+.+.+.....|++..||.+..+++..++...
T Consensus       134 ~~l~~W~~s~~~w~rR~ai~~~l~~~~~~d----~~~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~~  197 (232)
T 3jxy_A          134 AYIPKWIASDNIWLQRAAILFQLKYKQKMD----EELLFWIIGQLHSSKEFFIQKAIGWVLREYAKTN  197 (232)
T ss_dssp             GTHHHHHHSSCHHHHHHHHHTTTTCGGGCC----HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHhcCCchHHHHHHHHHHHHHHhCCC----HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhC
Confidence            666777777777676666655422111111    1234556666778888888888888888877543

>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*

Probab=90.55  E-value=1.7  Score=36.89  Aligned_cols=74  Identities=8%  Similarity=0.100  Sum_probs=52.7

Q ss_pred             hhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChHHH----hhcHHHHHHhhcCC-CCchHHHHHHHHHHHHHhhhch
Q 009975          408 QHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEIT----CSRLLPVVINASKD-RVPNIKFNVAKVLQSLIPIVDQ  481 (521)
Q Consensus       408 ~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~----~~~il~~l~~~l~d-~~~~VR~~a~~~l~~~~~~~~~  481 (521)
                      ...+..|.+.++++|+.+...|+..+..+.+..|..+.    ...++..+..+++. +.+.||..++..+......+..
T Consensus        44 k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~  122 (226)
T 3zyq_A           44 KYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHAFRN  122 (226)
T ss_dssp             HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCC
Confidence            45666777777788888888888888888887776543    24555555555433 4678999999888888877644

>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2

Probab=90.28  E-value=3.3  Score=32.69  Aligned_cols=74  Identities=12%  Similarity=0.102  Sum_probs=57.2

Q ss_pred             HhhhHHHHHhhhc-CcchHHHHHHHHHHHHhhcccChHHHh----hcHHHH-HHhhcC---CCCchHHHHHHHHHHHHHh
Q 009975          407 MQHITPQVLEMIN-NPHYLYRMTILRAISLLAPVMGSEITC----SRLLPV-VINASK---DRVPNIKFNVAKVLQSLIP  477 (521)
Q Consensus       407 ~~~l~~~l~~~l~-~~~~~~r~~a~~~l~~l~~~~~~~~~~----~~il~~-l~~~l~---d~~~~VR~~a~~~l~~~~~  477 (521)
                      ....+..|.+.++ ++|+.+...|+..+..+.+.+|..+..    ..++.. +.+.+.   ++...||..++..+.....
T Consensus        51 ~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~  130 (157)
T 1elk_A           51 PKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWAD  130 (157)
T ss_dssp             HHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHH
Confidence            4556777888887 588999999999999999999976542    457776 666663   3456899999999988887


Q ss_pred             hhc
Q 009975          478 IVD  480 (521)
Q Consensus       478 ~~~  480 (521)
                      .++
T Consensus       131 ~f~  133 (157)
T 1elk_A          131 AFR  133 (157)
T ss_dssp             HHT
T ss_pred             HcC
Confidence            664

>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0

Probab=90.14  E-value=5.3  Score=30.77  Aligned_cols=87  Identities=10%  Similarity=0.025  Sum_probs=56.3

Q ss_pred             HHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcChh----hhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCc
Q 009975          135 TDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ----DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP  210 (521)
Q Consensus       135 ~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~----~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~  210 (521)
                      .+.+..+.+-++..++.+...|+.++..+.++.++.    .....++.-+..++...++.||..+.+.+...+..++.+.
T Consensus        41 k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~f~~~~  120 (140)
T 3ldz_A           41 KDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDEFKNDP  120 (140)
T ss_dssp             HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHTTCG
T ss_pred             HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhCCCC
Confidence            344555556566677788888888888888887652    2223344444444445678899999999988888877664


Q ss_pred             cccchHHHHHH
Q 009975          211 TRMDLVPAYVR  221 (521)
Q Consensus       211 ~~~~l~~~l~~  221 (521)
                      ....+...+..
T Consensus       121 ~l~~i~~~Y~~  131 (140)
T 3ldz_A          121 QLSLISAMIKN  131 (140)
T ss_dssp             GGTHHHHHHHH
T ss_pred             CchHHHHHHHH
Confidence            43334444433

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=89.65  E-value=11  Score=33.71  Aligned_cols=183  Identities=9%  Similarity=0.043  Sum_probs=115.8

Q ss_pred             hhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhh-Chh-hh------HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHH-
Q 009975          330 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL-GVG-FF------DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEE-  400 (521)
Q Consensus       330 ~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~-~~~-~~------~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~-  400 (521)
                      ..++..+...+..=++..|..+...+..+...- |.. ..      .+.++..+.....+++...-.+  ..|...++. 
T Consensus        77 ~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~diAl~~G--~mLRecir~e  154 (341)
T 1upk_A           77 SGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCG--IMLRECIRHE  154 (341)
T ss_dssp             HSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHHHHH--HHHHHHHTSH
T ss_pred             hCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccchhHhHHH--HHHHHHHHhH
Confidence            566777777777778888888888777765542 221 11      1346666666666655443211  112211110 


Q ss_pred             -hCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccC---hHHH---hhcHHHHHHhhcCCCCchHHHHHHHHHH
Q 009975          401 -FGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMG---SEIT---CSRLLPVVINASKDRVPNIKFNVAKVLQ  473 (521)
Q Consensus       401 -~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~---~~~~---~~~il~~l~~~l~d~~~~VR~~a~~~l~  473 (521)
                       +.........+-.+.+....++..+-.-|..++..+.....   .+++   .+.+......++..++.-.|..+++.|+
T Consensus       155 ~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLLg  234 (341)
T 1upk_A          155 PLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLG  234 (341)
T ss_dssp             HHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHHHH
Confidence             00001122344466678888999998888888888764322   1221   2456677788999999999999999999


Q ss_pred             HHHhhhchHH-----H-HhhHHHHHHHhcCCCCccHHHHHHHHHHHH
Q 009975          474 SLIPIVDQSM-----V-EKTIRPCLVELTEDPDVDVRFFATQAIQSI  514 (521)
Q Consensus       474 ~~~~~~~~~~-----~-~~~~~~~l~~l~~D~~~~vr~~a~~al~~l  514 (521)
                      .+...-.+..     + ...-+-.+-.++.|+..+|+..|-+.++-.
T Consensus       235 elLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvF  281 (341)
T 1upk_A          235 ELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVF  281 (341)
T ss_dssp             HHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred             HHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeee
Confidence            9976422211     1 144556666789999999999999888754

>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B

Probab=89.62  E-value=6.6  Score=31.15  Aligned_cols=87  Identities=11%  Similarity=0.030  Sum_probs=58.1

Q ss_pred             HHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcChh----hhhhhhHHHHHHhcCC-CChHHHHHHHHHHHHHHHHhCCC
Q 009975          135 TDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ----DCVAHILPVIVNFSQD-KSWRVRYMVANQLYELCEAVGPE  209 (521)
Q Consensus       135 ~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~----~~~~~l~~~l~~~~~d-~~~~vR~~~~~~l~~i~~~~~~~  209 (521)
                      .+.+..+.+-++..++.+...|+.+|..+.++.++.    .....++.-+..++.. .++.||..+.+.+......++.+
T Consensus        51 keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~f~~~  130 (163)
T 1x5b_A           51 KDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEEFQKD  130 (163)
T ss_dssp             HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            445566666677788889999999999999887752    2223344444444443 66789999999998888877765


Q ss_pred             ccccchHHHHHH
Q 009975          210 PTRMDLVPAYVR  221 (521)
Q Consensus       210 ~~~~~l~~~l~~  221 (521)
                      .....+...+..
T Consensus       131 ~~l~~i~~~Y~~  142 (163)
T 1x5b_A          131 PQFSLISATIKS  142 (163)
T ss_dssp             STTHHHHHHHHH
T ss_pred             cccHHHHHHHHH
Confidence            433333333333

>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*

Probab=89.58  E-value=5.4  Score=31.94  Aligned_cols=76  Identities=16%  Similarity=0.132  Sum_probs=61.2

Q ss_pred             HhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChHHH----hhcHHHHHHhhcCC------CCchHHHHHHHHHHHHH
Q 009975          407 MQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEIT----CSRLLPVVINASKD------RVPNIKFNVAKVLQSLI  476 (521)
Q Consensus       407 ~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~----~~~il~~l~~~l~d------~~~~VR~~a~~~l~~~~  476 (521)
                      ....+..|.+.++++|..+...|+..+..+.+.+|..+.    ...++..+.+++..      ....||..++..+....
T Consensus        48 ~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~  127 (171)
T 1juq_A           48 PQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWT  127 (171)
T ss_dssp             HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence            455677788888999999999999999999998887653    35678888887753      36789999999999998


Q ss_pred             hhhchH
Q 009975          477 PIVDQS  482 (521)
Q Consensus       477 ~~~~~~  482 (521)
                      ..++..
T Consensus       128 ~~f~~~  133 (171)
T 1juq_A          128 MALPEE  133 (171)
T ss_dssp             HHCTTC
T ss_pred             HHcCCC
Confidence            887653

>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*

Probab=89.22  E-value=7.4  Score=31.16  Aligned_cols=75  Identities=8%  Similarity=0.019  Sum_probs=55.9

Q ss_pred             hhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChhhhH----HHHHHHHHHHcCC------CcHHHHHHHHHHHHHHHH
Q 009975          330 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD----DKLGALCMQWLQD------KVYSIRDAAANNLKRLAE  399 (521)
Q Consensus       330 ~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~----~~l~~~l~~~l~d------~~~~vr~~a~~~l~~l~~  399 (521)
                      ...+..+.+-++++++.+...++..+..+++++|..+..    ..++.-+..++..      .+..||..++..+..+..
T Consensus        49 k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~  128 (171)
T 1juq_A           49 QIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTM  128 (171)
T ss_dssp             HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence            455667777778889999999999999999998875432    3455556666642      467899999999999888


Q ss_pred             HhCHH
Q 009975          400 EFGPE  404 (521)
Q Consensus       400 ~~~~~  404 (521)
                      .++.+
T Consensus       129 ~f~~~  133 (171)
T 1juq_A          129 ALPEE  133 (171)
T ss_dssp             HCTTC
T ss_pred             HcCCC
Confidence            77643

>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2

Probab=88.78  E-value=7.1  Score=30.37  Aligned_cols=74  Identities=8%  Similarity=0.001  Sum_probs=53.2

Q ss_pred             hhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChhhhH----HHHHHHHHHHcCC------CcHHHHHHHHHHHHHHHH
Q 009975          330 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD----DKLGALCMQWLQD------KVYSIRDAAANNLKRLAE  399 (521)
Q Consensus       330 ~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~----~~l~~~l~~~l~d------~~~~vr~~a~~~l~~l~~  399 (521)
                      ...+..+..-++++++.+...++..+..+++++|..+..    ..++.-+..++.+      .+..||..++..+..+..
T Consensus        37 k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~  116 (148)
T 1mhq_A           37 THAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV  116 (148)
T ss_dssp             HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence            345666666677888888888888888888888875432    4455556666654      367888888888888887


Q ss_pred             HhCH
Q 009975          400 EFGP  403 (521)
Q Consensus       400 ~~~~  403 (521)
                      .++.
T Consensus       117 ~f~~  120 (148)
T 1mhq_A          117 WFPE  120 (148)
T ss_dssp             HCTT
T ss_pred             HcCC
Confidence            7654

>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*

Probab=88.02  E-value=11  Score=31.88  Aligned_cols=131  Identities=11%  Similarity=0.109  Sum_probs=73.0

Q ss_pred             HHHHHhhcCCChHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHh-cCCChHHHHHHH-HHhHHHHhhhChhhhHHHHH
Q 009975          295 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELA-EDRHWRVRLAII-EYIPLLASQLGVGFFDDKLG  372 (521)
Q Consensus       295 ~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~vr~~~~-~~l~~l~~~~~~~~~~~~l~  372 (521)
                      ..+..+.+++..+.|..|+..+....+.+.+     .-++.+..++ ...+|.+-...+ ..++.+....+.     ...
T Consensus        64 ~~~~~L~~~~~~E~r~~ai~~l~~~~k~~~~-----~~l~~~~~~l~~~~nWd~~D~~a~~~~g~~~~~~p~-----~~~  133 (232)
T 3jxy_A           64 IIIRELWDLPEREFQAAALDIMQKYKKHINE-----THIPFLEELIVTKSWWDSVDSIVPTFLGDIFLKHPE-----LIS  133 (232)
T ss_dssp             HHHHHHHTSSBHHHHHHHHHHHHHTGGGCCG-----GGHHHHHHHHTSSCCHHHHHHHTTTHHHHHHHHCGG-----GGG
T ss_pred             HHHHHHhcCcHHHHHHHHHHHHHHHHHhCCH-----HHHHHHHHHHccCCChHHHHHhhHHHHHHHHHHCHH-----HHH
Confidence            4555666777777777777776644333322     2233344433 346677655442 233333332111     134


Q ss_pred             HHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcc
Q 009975          373 ALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPV  439 (521)
Q Consensus       373 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~  439 (521)
                      +.+..+..|++..+|+.|+..+-...  ...+  ...+++.+...+.|+.+-+|.+..++|..++..
T Consensus       134 ~~l~~W~~s~~~w~rR~ai~~~l~~~--~~~d--~~~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~  196 (232)
T 3jxy_A          134 AYIPKWIASDNIWLQRAAILFQLKYK--QKMD--EELLFWIIGQLHSSKEFFIQKAIGWVLREYAKT  196 (232)
T ss_dssp             GTHHHHHHSSCHHHHHHHHHTTTTCG--GGCC--HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHhcCCchHHHHHHHHHHHHHH--hCCC--HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh
Confidence            55667778888888887765542111  1111  223455556667788888888888888777764

>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*

Probab=85.69  E-value=12  Score=31.51  Aligned_cols=78  Identities=14%  Similarity=0.113  Sum_probs=53.2

Q ss_pred             HHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcChh----hhhhhhHHHHHHhcC-CCChHHHHHHHHHHHHHHHHhCC
Q 009975          134 KTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ----DCVAHILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGP  208 (521)
Q Consensus       134 ~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~----~~~~~l~~~l~~~~~-d~~~~vR~~~~~~l~~i~~~~~~  208 (521)
                      -.+.+..+.+-++..++.+...|+.+|..+.++.++.    .....++..+..+++ ..+..||..+.+.+...+..++.
T Consensus        43 ~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~  122 (226)
T 3zyq_A           43 AKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHAFRN  122 (226)
T ss_dssp             HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCC
Confidence            3455666666677888889999999999998887652    222334444444333 35678999999988888877765


Q ss_pred             Ccc
Q 009975          209 EPT  211 (521)
Q Consensus       209 ~~~  211 (521)
                      +..
T Consensus       123 ~~~  125 (226)
T 3zyq_A          123 EPK  125 (226)
T ss_dssp             CGG
T ss_pred             Ccc
Confidence            543

>3ut4_A CTHE_2751, putative uncharacterized protein; non PFAM singleton, helical fold, unknown function; 2.03A {Clostridium thermocellum} PDB: 3ut8_A 3ut7_A

Probab=85.68  E-value=4.4  Score=30.62  Aligned_cols=77  Identities=14%  Similarity=0.188  Sum_probs=39.3

Q ss_pred             HHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChHHHhhcHH
Q 009975          371 LGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLL  450 (521)
Q Consensus       371 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~il  450 (521)
                      ++|-++.+++|.||.+...++..|..+         .+.++|.+.+.+++.+..-..   +.+..+...+..+ ....+.
T Consensus        32 ~lp~LL~WLQD~NWPvA~~i~~~L~~~---------~~~l~p~I~~vl~s~D~~W~y---wil~~lv~~~~~~-~~~~l~   98 (134)
T 3ut4_A           32 IIFDLLKWLQDYNWPIAKDILPVVVLH---------QSIAMPHILTILQGNDIMWKY---WVIKLMIPYLIYP-NKQLVK   98 (134)
T ss_dssp             HHHHHHGGGSCTTSTTHHHHHHHHHHT---------HHHHHHHHHHHHHSSCHHHHH---HHHHHHGGGCCHH-HHHHHH
T ss_pred             HHHHHHHHHhcCCCccHHHHHHHHHHc---------cHhhHHHHHHHHHcCChHHHH---HHHHHHHHcCCHH-HHHHHH
Confidence            566666777777777766555554432         234555555555444433332   3333334333332 234455


Q ss_pred             HHHHhhcCCC
Q 009975          451 PVVINASKDR  460 (521)
Q Consensus       451 ~~l~~~l~d~  460 (521)
                      +.+.++...+
T Consensus        99 ~eL~rl~~~p  108 (134)
T 3ut4_A           99 SELERLSSLE  108 (134)
T ss_dssp             HHHHHHHTCC
T ss_pred             HHHHHHHhCC
Confidence            5566655544

>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A

Probab=84.81  E-value=2.5  Score=32.41  Aligned_cols=70  Identities=14%  Similarity=0.202  Sum_probs=48.1

Q ss_pred             HhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchHHHHhhHH---HHHHHhc-----CC------CCccHHHHHHHH
Q 009975          445 TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIR---PCLVELT-----ED------PDVDVRFFATQA  510 (521)
Q Consensus       445 ~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~~~~~~---~~l~~l~-----~D------~~~~vr~~a~~a  510 (521)
                      +...+++.|++-+.++.+.|+..|+++|..++.... +.|...+.   ..+..+.     .|      ...+||..|.+.
T Consensus        46 ~~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs-~~f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl  124 (140)
T 1vdy_A           46 IVKEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSG-SEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRETAHET  124 (140)
T ss_dssp             HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSC-HHHHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCC-HHHHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHHHHHHHH
Confidence            347899999999999999999999999999987643 33332221   2233331     12      237889888888


Q ss_pred             HHHHH
Q 009975          511 IQSID  515 (521)
Q Consensus       511 l~~l~  515 (521)
                      +..|.
T Consensus       125 ~~ll~  129 (140)
T 1vdy_A          125 ISAIF  129 (140)
T ss_dssp             HHHHT
T ss_pred             HHHHh
Confidence            77653

>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*

Probab=83.00  E-value=29  Score=32.04  Aligned_cols=95  Identities=7%  Similarity=0.081  Sum_probs=47.4

Q ss_pred             chHHHHHHHHHHHHhhcccChHHHhh---cHHHHHHhhcCCCCchHHHHHHHHHHH--HHhhh--chHHHHhhHHHHHHH
Q 009975          422 HYLYRMTILRAISLLAPVMGSEITCS---RLLPVVINASKDRVPNIKFNVAKVLQS--LIPIV--DQSMVEKTIRPCLVE  494 (521)
Q Consensus       422 ~~~~r~~a~~~l~~l~~~~~~~~~~~---~il~~l~~~l~d~~~~VR~~a~~~l~~--~~~~~--~~~~~~~~~~~~l~~  494 (521)
                      +..-....+.-+..+.+.+++..|..   .+...+-.+++.++..|-.+|+..+..  +...+  ..+.+.+.+.|.|.+
T Consensus       264 ns~KevlFL~Ele~iLe~~~~~~f~~i~~~lf~~la~ci~S~hfqVAErAL~~wnNe~i~~li~~n~~~IlPii~p~L~~  343 (403)
T 3fga_B          264 HSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAAKILPIMFPSLYR  343 (403)
T ss_dssp             CHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHhccHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            34444455555666666666555432   334444555666666666666554411  11111  112233445555555


Q ss_pred             hcC-CCCccHHHHHHHHHHHHHH
Q 009975          495 LTE-DPDVDVRFFATQAIQSIDH  516 (521)
Q Consensus       495 l~~-D~~~~vr~~a~~al~~l~~  516 (521)
                      .+. .=+..||..+..+++.+.+
T Consensus       344 ~~~~HWn~~v~~l~~~vlk~l~e  366 (403)
T 3fga_B          344 NSKTHWNKTIHGLIYNALKLFME  366 (403)
T ss_dssp             TTSCCSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHccCHHHHHHHHHHHHHHHH
Confidence            333 2366677667666666544

>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20

Probab=82.42  E-value=33  Score=32.26  Aligned_cols=84  Identities=13%  Similarity=0.222  Sum_probs=37.8

Q ss_pred             HHHHHHHHHhCHHHHHh---hhHHHHHhhhcCcchHHHHHHHHHHHHh--hcccChHHHhhcHHHHHHhhc-----CCCC
Q 009975          392 NNLKRLAEEFGPEWAMQ---HITPQVLEMINNPHYLYRMTILRAISLL--APVMGSEITCSRLLPVVINAS-----KDRV  461 (521)
Q Consensus       392 ~~l~~l~~~~~~~~~~~---~l~~~l~~~l~~~~~~~r~~a~~~l~~l--~~~~~~~~~~~~il~~l~~~l-----~d~~  461 (521)
                      .-+..+....+...+..   .++..+...+++++.+|-+.|+..+..=  ...+  ......++|.++..+     .+.+
T Consensus       306 ~eleeile~~~~~ef~~i~~~lF~~la~ci~S~hfqVAErAL~~w~N~~i~~li--~~n~~~IlPii~p~L~~~s~~HWn  383 (449)
T 2npp_B          306 NELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLI--SDNAAKILPIMFPSLYRNSKTHWN  383 (449)
T ss_dssp             HHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHH--HTTHHHHHHHHHHHHTSCTTCCSS
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHCCHHHHHHH--HhchhhhHHhhHHHHHHHHHHhcC
Confidence            33444444444444432   2344444555666666666665444211  1110  001233444444332     3345


Q ss_pred             chHHHHHHHHHHHHHh
Q 009975          462 PNIKFNVAKVLQSLIP  477 (521)
Q Consensus       462 ~~VR~~a~~~l~~~~~  477 (521)
                      ..||..+.+++..+.+
T Consensus       384 ~~V~~la~~vlk~l~e  399 (449)
T 2npp_B          384 KTIHGLIYNALKLFME  399 (449)
T ss_dssp             TTHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            5566666666664443

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=80.82  E-value=31  Score=30.88  Aligned_cols=138  Identities=10%  Similarity=0.063  Sum_probs=86.9

Q ss_pred             CChHHHHHHHHhHHHHHHh---hCchhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcCh-hh--hhhhhHHHHHH
Q 009975          109 DMPMVRRSAASNLGKFAAT---VEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP-QD--CVAHILPVIVN  182 (521)
Q Consensus       109 ~~~~vr~~a~~~l~~l~~~---~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~-~~--~~~~l~~~l~~  182 (521)
                      .+...++.+...|..+...   +-.+.+...-+..+.....+.+.+....++.++.++..+... +.  ..+.++.-+..
T Consensus       130 ~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~fI~~lys  209 (339)
T 3dad_A          130 SSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHSDTIQWLYT  209 (339)
T ss_dssp             CCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCHHHHHHHHH
Confidence            4466677777778774431   222444455567777777777889999999999999877322 11  13446666777


Q ss_pred             hcCCCChHHHHHHHHHHHHHHHHhCCCcc-------------ccchHHHHHHhcC---CChHHHHHHHHHhHHHHHhhhC
Q 009975          183 FSQDKSWRVRYMVANQLYELCEAVGPEPT-------------RMDLVPAYVRLLR---DNEAEVRIAAAGKVTKFCRILN  246 (521)
Q Consensus       183 ~~~d~~~~vR~~~~~~l~~i~~~~~~~~~-------------~~~l~~~l~~~l~---d~~~~vr~~a~~~l~~l~~~~~  246 (521)
                      ++.+.+..|-+.+.+.|..++........             ....+..++..++   ..+.+++..|+..+..+....+
T Consensus       210 lv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLIN~lL~~ap  289 (339)
T 3dad_A          210 LCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTLINKTLAALP  289 (339)
T ss_dssp             GGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHHHHHHHHCS
T ss_pred             HHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhcCC
Confidence            77778888888888888877764321100             0112344555554   4566777777766666665554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	521
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	1e-100
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	7e-26
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	6e-24
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	2e-23
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	2e-23
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	3e-23
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	7e-23
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	3e-14
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	5e-12
d2vgla_	584	a.118.1.10 (A:) Adaptin alpha C subunit N-terminal	5e-14
d2vgla_	584	a.118.1.10 (A:) Adaptin alpha C subunit N-terminal	1e-07
d2vglb_	579	a.118.1.10 (B:) Adaptin beta subunit N-terminal fr	8e-13
d2vglb_	579	a.118.1.10 (B:) Adaptin beta subunit N-terminal fr	5e-09
d1qbkb_	888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	5e-11
d1qbkb_	888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	5e-06
d1lrva_	233	a.118.1.5 (A:) Leucine-rich repeat variant {Azotob	9e-10
d1lrva_	233	a.118.1.5 (A:) Leucine-rich repeat variant {Azotob	2e-09
d1lrva_	233	a.118.1.5 (A:) Leucine-rich repeat variant {Azotob	3e-04
d1ibrb_	458	a.118.1.1 (B:) Importin beta {Human (Homo sapiens)	1e-09
d1ibrb_	458	a.118.1.1 (B:) Importin beta {Human (Homo sapiens)	8e-07
d1ibrb_	458	a.118.1.1 (B:) Importin beta {Human (Homo sapiens)	1e-06
d1ibrb_	458	a.118.1.1 (B:) Importin beta {Human (Homo sapiens)	3e-06
d2bpta1	861	a.118.1.1 (A:1-861) Importin beta {Baker's yeast (	5e-04
d1oyza_	276	a.118.1.16 (A:) Hypothetical protein YibA {Escheri	5e-04
d1oyza_	276	a.118.1.16 (A:) Hypothetical protein YibA {Escheri	6e-04

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  312 bits (799), Expect = e-100
 Identities = 296/518 (57%), Positives = 384/518 (74%), Gaps = 4/518 (0%)

Query: 1   MAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWY 60
           +AE+LG F   VGG E+ H LLPPLE+L TVEET VRDKAVESL  I  +   SDL   +
Sbjct: 68  LAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHF 127

Query: 61  IPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASN 120
           +PLVKRLA G+WFT+R SACGLF + YP     +K ELR  +  LC DD PMVRR+AAS 
Sbjct: 128 VPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASK 187

Query: 121 LGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVI 180
           LG+FA  +E  ++K++I+ +F +L  D+QDSVRLLAVE C  + +LL  +D  A ++P +
Sbjct: 188 LGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTL 247

Query: 181 VNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTK 240
              ++DKSWRVRYMVA++  EL +AVGPE T+ DLVPA+  L++D EAEVR AA+ KV +
Sbjct: 248 RQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKE 307

Query: 241 FCRILNPELA----IQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPI 296
           FC  L+ +      +  ILPC+KEL SD++QHV+SALASVIMG++P+LGKD TIE LLP+
Sbjct: 308 FCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPL 367

Query: 297 FLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIP 356
           FL+ LKDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY+P
Sbjct: 368 FLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMP 427

Query: 357 LLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLE 416
           LLA QLGV FFD+KL +LCM WL D VY+IR+AA +NLK+L E+FG EWA   I P+VL 
Sbjct: 428 LLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLA 487

Query: 417 MINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLI 476
           M  +P+YL+RMT L  I++L+ V G +IT   +LP V+  + D V N++FNVAK LQ + 
Sbjct: 488 MSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIG 547

Query: 477 PIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSI 514
           PI+D S ++  ++P L +LT+D DVDV++FA +A+  +
Sbjct: 548 PILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALTVL 585

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  109 bits (271), Expect = 7e-26
 Identities = 56/278 (20%), Positives = 118/278 (42%)

Query: 82  LFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIF 141
             +++     +++ +++     +L  D    V+ + AS +   +  +   +    ++ +F
Sbjct: 309 CENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLF 368

Query: 142 EDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYE 201
               +D+   VRL  +     + +++  +     +LP IV  ++D  WRVR  +   +  
Sbjct: 369 LAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPL 428

Query: 202 LCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKEL 261
           L   +G E     L    +  L D+   +R AA   + K       E A   I+P V  +
Sbjct: 429 LAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAM 488

Query: 262 SSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQ 321
           S D +   R      I  ++ + G+D T + +LP  L +  D   +VR N+   L ++  
Sbjct: 489 SGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGP 548

Query: 322 VIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLA 359
           ++    L   + P + +L +D+   V+    E + +L+
Sbjct: 549 ILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALTVLS 586

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  103 bits (256), Expect = 6e-24
 Identities = 83/427 (19%), Positives = 171/427 (40%), Gaps = 5/427 (1%)

Query: 16  EHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGE-WFT 74
                L      LC+ +   VR  A   L      +   ++    IP+   LA+ E    
Sbjct: 160 AVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSV 219

Query: 75  ARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLK 134
             ++     +IA     + L+  +     Q  +D    VR   A    +    V P   K
Sbjct: 220 RLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITK 279

Query: 135 TDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP----QDCVAHILPVIVNFSQDKSWR 190
           TD++  F++L +D +  VR  A        + L         ++ ILP I     D +  
Sbjct: 280 TDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQH 339

Query: 191 VRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELA 250
           V+  +A+ +  L   +G + T   L+P ++  L+D   EVR+     +     ++     
Sbjct: 340 VKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQL 399

Query: 251 IQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRL 310
            Q +LP + EL+ D+   VR A+   +  +A  LG +   E+L  + ++ L D    +R 
Sbjct: 400 SQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIRE 459

Query: 311 NIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDK 370
              S L ++ +  G +    +++P ++ ++ D ++  R+  +  I +L+   G       
Sbjct: 460 AATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKH 519

Query: 371 LGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTIL 430
           +    ++   D V ++R   A +L+++            + P + ++  +     +    
Sbjct: 520 MLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQ 579

Query: 431 RAISLLA 437
            A+++L+
Sbjct: 580 EALTVLS 586

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (251), Expect = 2e-23
 Identities = 56/299 (18%), Positives = 115/299 (38%), Gaps = 2/299 (0%)

Query: 223 LRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAP 282
           LR+ + ++R+ +  K++     L  E     +LP + +   D  + V  ALA  +     
Sbjct: 19  LRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDE-VLLALAEQLGTFTT 77

Query: 283 LLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAED 342
           L+G    +  LLP   SL   E   VR   +  L  ++       L    +P +  LA  
Sbjct: 78  LVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGG 137

Query: 343 RHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFG 402
             +  R +      +   ++      + L         D    +R AAA+ L   A+   
Sbjct: 138 DWFTSRTSACGLFSVCYPRVSSAVKAE-LRQYFRNLCSDDTPMVRRAAASKLGEFAKVLE 196

Query: 403 PEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVP 462
            +     I P    + ++     R+  + A   +A ++  E   + ++P +  A++D+  
Sbjct: 197 LDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSW 256

Query: 463 NIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMMSS 521
            +++ VA     L   V   + +  + P    L +D + +VR  A+  ++     + + 
Sbjct: 257 RVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSAD 315

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (251), Expect = 2e-23
 Identities = 87/444 (19%), Positives = 174/444 (39%), Gaps = 7/444 (1%)

Query: 76  RVSACGLFH-IAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLK 134
           R+++      IA     +  ++EL    T    D+   V  + A  LG F   V      
Sbjct: 27  RLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDE-VLLALAEQLGTFTTLVGGPEYV 85

Query: 135 TDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYM 194
             ++   E L   ++  VR  AVE   A+     P D  AH +P++   +    W     
Sbjct: 86  HCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGD-WFTSRT 144

Query: 195 VANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHI 254
            A  L+ +C        + +L   +  L  D+   VR AAA K+ +F ++L  +     I
Sbjct: 145 SACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEI 204

Query: 255 LPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIIS 314
           +P    L+SD    VR       + +A LL ++     ++P      +D+   VR  +  
Sbjct: 205 IPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVAD 264

Query: 315 KLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD----DK 370
           K  ++ + +G ++    L+PA   L +D    VR A    +      L     +     +
Sbjct: 265 KFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQ 324

Query: 371 LGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTIL 430
           +     + + D    ++ A A+ +  L+   G +  ++H+ P  L  + +     R+ I+
Sbjct: 325 ILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNII 384

Query: 431 RAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRP 490
             +  +  V+G       LLP ++  ++D    ++  + + +  L   +     ++ +  
Sbjct: 385 SNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNS 444

Query: 491 CLVELTEDPDVDVRFFATQAIQSI 514
             +    D    +R  AT  ++ +
Sbjct: 445 LCMAWLVDHVYAIREAATSNLKKL 468

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (250), Expect = 3e-23
 Identities = 87/416 (20%), Positives = 173/416 (41%), Gaps = 6/416 (1%)

Query: 107 QDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKL 166
           +++   +R ++   L   A  +     +++++    D   D+ D V L   E       L
Sbjct: 20  RNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDE-DEVLLALAEQLGTFTTL 78

Query: 167 LEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDN 226
           +   + V  +LP + + +  +   VR      L  +     P       VP   RL   +
Sbjct: 79  VGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGD 138

Query: 227 EAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK 286
               R +A G  +     ++  +    +    + L SD +  VR A AS +   A +L  
Sbjct: 139 WFTSRTSACGLFSVCYPRVSSAV-KAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLEL 197

Query: 287 DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWR 346
           D    +++P+F +L  DE   VRL  +     + Q++  + L   ++P + + AED+ WR
Sbjct: 198 DNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWR 257

Query: 347 VRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE-- 404
           VR  + +    L   +G       L       ++D    +R AA++ +K   E    +  
Sbjct: 258 VRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCR 317

Query: 405 --WAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVP 462
               M  I P + E++++ +   +  +   I  L+P++G + T   LLP+ +   KD  P
Sbjct: 318 ENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECP 377

Query: 463 NIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVM 518
            ++ N+   L  +  ++    + +++ P +VEL ED    VR    + +  +   +
Sbjct: 378 EVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQL 433

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 99.9 bits (247), Expect = 7e-23
 Identities = 71/386 (18%), Positives = 135/386 (34%), Gaps = 6/386 (1%)

Query: 138 MSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVAN 197
           +++  D  +++   +RL +++  + +   L  +   + +LP + +   D+   V   +A 
Sbjct: 12  IAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDED-EVLLALAE 70

Query: 198 QLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPC 257
           QL      VG       L+P    L    E  VR  A   +       +P     H +P 
Sbjct: 71  QLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPL 130

Query: 258 VKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLD 317
           VK L+           A  +  +       A   +L   F +L  D+ P VR    SKL 
Sbjct: 131 VKRLAGGDW-FTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLG 189

Query: 318 QVNQVIGIDLLSQSLLPAIVELAEDRHWRVRL----AIIEYIPLLASQLGVGFFDDKLGA 373
           +  +V+ +D +   ++P    LA D    VRL    A +    LL  +         L  
Sbjct: 190 EFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQ 249

Query: 374 LCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAI 433
                     Y + D      K +  E      +      + +            +    
Sbjct: 250 AAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFC 309

Query: 434 SLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLV 493
             L+      +  S++LP +     D   ++K  +A V+  L PI+ +    + + P  +
Sbjct: 310 ENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFL 369

Query: 494 ELTEDPDVDVRFFATQAIQSIDHVMM 519
              +D   +VR      +  ++ V+ 
Sbjct: 370 AQLKDECPEVRLNIISNLDCVNEVIG 395

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.6 bits (179), Expect = 3e-14
 Identities = 52/431 (12%), Positives = 132/431 (30%), Gaps = 24/431 (5%)

Query: 111 PMVRRSAASNLGKFAATVEPAHLKTD---IMSIFEDLTQDDQDSVRLLAVEGCAALGKLL 167
              R  A ++L                  ++ +   L +D    V+ LAV+    L   +
Sbjct: 17  KDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKV 76

Query: 168 EPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVR------ 221
             +  V  I+  +         ++R + +  L  +   + P  +   L     +      
Sbjct: 77  -KEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRL 135

Query: 222 ---LLRDNEAEVRIAAAGKVTKFCRILNPELAIQH--ILPCVKELSSDSSQHVRSALASV 276
              + +  +  V++ A   +          L   H  IL C+    +     VR      
Sbjct: 136 TSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIA 195

Query: 277 IMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQ--SLLP 334
           +  +    G    ++ +  +   L K++        I  +  +++  G  +      ++P
Sbjct: 196 LGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIP 255

Query: 335 AIVELAEDRHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLQDKVYSIRDAAAN 392
            +V+        +R   I+       +           +  +C+++L        D    
Sbjct: 256 LVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDE 315

Query: 393 NLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEIT--CSRLL 450
           +   +  +          +       ++  +  R    + +  +       +      + 
Sbjct: 316 DENAMDADG--GDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVS 373

Query: 451 PVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQA 510
           P +I+  K+R  N+K +V     SL+    + +      P  +E  E P   ++      
Sbjct: 374 PALISRFKEREENVKADVFHAYLSLL-KQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNI 432

Query: 511 IQSIDHVMMSS 521
           ++++   M   
Sbjct: 433 VKALHKQMKEK 443

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.3 bits (160), Expect = 5e-12
 Identities = 72/499 (14%), Positives = 151/499 (30%), Gaps = 28/499 (5%)

Query: 39   KAVESLCRIGSQMRESDLVDWYIPLVKRLAAG-EWFTARVSACGLFHIAYPSAPDILKTE 97
            K +  L +  S      + D +   +KRL A       +  A         +  D L ++
Sbjct: 545  KVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSD 604

Query: 98   L-RSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLA 156
            L  ++   L +    + R +    L   A +     L+  +      L    + + R L 
Sbjct: 605  LPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALK 664

Query: 157  VEGCAALGKLLE------PQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE- 209
            +   +AL  L++          +  +L  +     +    V  M  + L  L +      
Sbjct: 665  LGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSL 724

Query: 210  -PTRMDLVPAYVRLLRD-------NEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKEL 261
                  ++   + L+R          A +    A  VT    +   +L      P   + 
Sbjct: 725  SKISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQS 784

Query: 262  SSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQ 321
            ++ + +    ++A  +  +     K+        I           +RL  +  L +V  
Sbjct: 785  TALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGH 844

Query: 322  VIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQD 381
             I +    + L   I+E        V+ A    +  ++      +    L  +  Q    
Sbjct: 845  HIDLSGQLE-LKSVILEAFSSPSEEVKSAASYALGSISVGNLPEYLPFVLQEITSQP--K 901

Query: 382  KVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMG 441
            + Y +  +    +   +      +    I   +L+         R  +   +  L  +  
Sbjct: 902  RQYLLLHSLKEIISSASVVGLKPYVEN-IWALLLKHCECAEEGTRNVVAECLGKLTLIDP 960

Query: 442  SEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVE--KTIRPCLVELTEDP 499
                   LLP +           + +V   ++  I    Q +    K      ++  EDP
Sbjct: 961  ET-----LLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTLEDP 1015

Query: 500  DVDVRFFATQAIQSIDHVM 518
            D++VR  A     S  H  
Sbjct: 1016 DLNVRRVALVTFNSAAHNK 1034

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.8 bits (151), Expect = 5e-11
 Identities = 64/466 (13%), Positives = 146/466 (31%), Gaps = 47/466 (10%)

Query: 98  LRSIYTQLCQDDMPMVRRSAASNLGKFAATVE---PAHLKTDIMSIFEDLTQDDQDSVRL 154
           L  + T+L  +D P  R  +   L           P  +   I S   +   D    +R 
Sbjct: 48  LIFVLTKLKSEDEP-TRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNIGDSSPLIRA 106

Query: 155 LAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR-- 212
                   +    E Q+    +LP + +    + +         L ++CE          
Sbjct: 107 TVGILITTIASKGELQN-WPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDV 165

Query: 213 -----MDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQH--ILPCVKELSSDS 265
                  ++P +++  + +  ++R  A   V +F       L +        +  L+ D 
Sbjct: 166 LDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFTENLFALAGDE 225

Query: 266 SQHVRSALASVIMGMAPLLGK--DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI 323
              VR  +   ++ +  +        +  ++   L   +D+  +V L        + +  
Sbjct: 226 EPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQP 285

Query: 324 GIDLLSQSLLPAIVELAEDRHWRVRLAII---------EYIPLLASQLGVGFFDDKLGAL 374
               +    LP ++ +  +      + II         E IP     +   F   +  A 
Sbjct: 286 ICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEEDETIPDSEQDIRPRFHRSRTVAQ 345

Query: 375 CM----------------QWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMI 418
                                    +++R  +A  L  LA  +  +  + HI P + E++
Sbjct: 346 QHDEDGIEEEDDDDDEIDDDDTISDWNLRKCSAAALDVLANVY-RDELLPHILPLLKELL 404

Query: 419 NNPHYLYRMTILRAISLLAPVMGSEIT--CSRLLPVVINASKDRVPNIKFNVAKVLQSLI 476
            +  ++ + + +  +  +A      +      L+P +I    D+   ++      L    
Sbjct: 405 FHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYA 464

Query: 477 PIV---DQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMM 519
             V         K +   L++   D +  V+  A  A  +++    
Sbjct: 465 HWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEAC 510

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.6 bits (109), Expect = 5e-06
 Identities = 47/338 (13%), Positives = 100/338 (29%), Gaps = 34/338 (10%)

Query: 22  LPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLV-----------KRLAAG 70
           +P L    + ++  VR     +L R    +       +  PL+           KR+   
Sbjct: 438 IPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEA 497

Query: 71  EWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAAT--V 128
                            P    IL T + +      Q    ++   A   L         
Sbjct: 498 ACSAFATLEEEACTELVPYLAYILDTLVFAF--SKYQHKNLLILYDAIGTLADSVGHHLN 555

Query: 129 EPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKS 188
           +P +++  +  + +       +   L  +  C +          + +  PV         
Sbjct: 556 KPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQ 615

Query: 189 WRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE 248
             +   + N           E    D +   + LL           +G        +   
Sbjct: 616 KTLAQAMLNNAQPDQY----EAPDKDFMIVALDLL-----------SGLAEGLGGNIEQL 660

Query: 249 LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDAT--IEQLLPIFLSLLKDEFP 306
           +A  +IL  + +   D    VR +  +++  +     +     I   +PI  + L  EF 
Sbjct: 661 VARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFI 720

Query: 307 DVRLNIISKLDQVNQVIGIDLLS--QSLLPAIVELAED 342
            V  N    + +++  +GI++      +L  +VE+   
Sbjct: 721 SVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINR 758

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} Length = 233

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

 Score = 56.7 bits (136), Expect = 9e-10
 Identities = 53/301 (17%), Positives = 86/301 (28%), Gaps = 93/301 (30%)

Query: 25  LETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFH 84
           L   CT  + CV  ++   + R                L  +  A  ++  R  A     
Sbjct: 17  LTGRCTPGDACVAVESGRQIDRFFR---------NNPHLAVQYLADPFWERRAIA----- 62

Query: 85  IAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDL 144
               S  + L        T L +D   +VRR+ A  L +                    L
Sbjct: 63  -VRYSPVEAL--------TPLIRDSDEVVRRAVAYRLPR---------------EQLSAL 98

Query: 145 TQDDQDSVRLLAVEGC--AALGKLLEPQD-------CVAHILPVIVNFSQDKSWRVRYMV 195
             D+   VR+   +      L ++   +D               +  F +D+  +VR +V
Sbjct: 99  MFDEDREVRITVADRLPLEQLEQMAADRDYLVRAYVVQRIPPGRLFRFMRDEDRQVRKLV 158

Query: 196 ANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHIL 255
           A +                   +   + +D E EVR   A ++                 
Sbjct: 159 AKR---------------LPEESLGLMTQDPEPEVRRIVASRL---------------RG 188

Query: 256 PCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISK 315
             + EL  D    VR A                  E      L  L +  P+VRL I  +
Sbjct: 189 DDLLELLHDPDWTVRLAAV----------------EHASLEALRELDEPDPEVRLAIAGR 232

Query: 316 L 316
           L
Sbjct: 233 L 233

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} Length = 233

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

 Score = 56.3 bits (135), Expect = 2e-09
 Identities = 34/199 (17%), Positives = 58/199 (29%), Gaps = 53/199 (26%)

Query: 216 VPAYVRLLRDNEAEVRIAAAG-------------KVTKFCRILNPELAIQHILPCVKELS 262
           V A   L+RD++  VR A A              +  +    +   L ++ +        
Sbjct: 68  VEALTPLIRDSDEVVRRAVAYRLPREQLSALMFDEDREVRITVADRLPLEQLEQMAA--D 125

Query: 263 SDSSQHVRSALASVIMGMAPLL-------GKDATIEQLLPIFLSLLKDEFPDVRLNIISK 315
            D               +   +        K             + +D  P+VR  + S+
Sbjct: 126 RDYLVRAYVVQRIPPGRLFRFMRDEDRQVRKLVAKRLPEESLGLMTQDPEPEVRRIVASR 185

Query: 316 LDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALC 375
           L                   ++EL  D  W VRLA +E+  L A                
Sbjct: 186 LR---------------GDDLLELLHDPDWTVRLAAVEHASLEA---------------- 214

Query: 376 MQWLQDKVYSIRDAAANNL 394
           ++ L +    +R A A  L
Sbjct: 215 LRELDEPDPEVRLAIAGRL 233

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} Length = 233

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

 Score = 40.1 bits (93), Expect = 3e-04
 Identities = 41/304 (13%), Positives = 85/304 (27%), Gaps = 82/304 (26%)

Query: 210 PTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHV 269
             RM L+        D  A V + +  ++ +F R  NP LA+Q++        +D     
Sbjct: 10  SFRMSLLLTGRCTPGD--ACVAVESGRQIDRFFR-NNPHLAVQYL--------ADPFWER 58

Query: 270 RSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLS 329
           R+              + + +E L P    L++D    VR  +  +L +           
Sbjct: 59  RAIAV-----------RYSPVEALTP----LIRDSDEVVRRAVAYRLPR----------- 92

Query: 330 QSLLPAIVELAEDRHWRVRLAIIEY--IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIR 387
                 +  L  D    VR+ + +   +  L        +  +   +           +R
Sbjct: 93  ----EQLSALMFDEDREVRITVADRLPLEQLEQMAADRDYLVRAYVVQRIPPGRLFRFMR 148

Query: 388 DAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCS 447
           D      K +A+    E         +  M  +P    R  +   +              
Sbjct: 149 DEDRQVRKLVAKRLPEES--------LGLMTQDPEPEVRRIVASRLRG------------ 188

Query: 448 RLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFA 507
                ++    D    ++    +                      +   ++PD +VR   
Sbjct: 189 ---DDLLELLHDPDWTVRLAAVE----------------HASLEALRELDEPDPEVRLAI 229

Query: 508 TQAI 511
              +
Sbjct: 230 AGRL 233

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.3 bits (139), Expect = 1e-09
 Identities = 35/260 (13%), Positives = 82/260 (31%), Gaps = 10/260 (3%)

Query: 82  LFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIF 141
           L         +  +  +  +  +  Q     VR +A  NL K  +            ++F
Sbjct: 201 LEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALF 260

Query: 142 EDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYE 201
               +  +  +  +A++G      + + +  +A          +      ++     L  
Sbjct: 261 AITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQY 320

Query: 202 LCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKEL 261
           L   +    T+ D          D++      AAG           +  + H+LP +KE 
Sbjct: 321 LVPILTQTLTKQDEND-------DDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEH 373

Query: 262 SSDSSQHVRSALASVIMGMAPLLGKDAT---IEQLLPIFLSLLKDEFPDVRLNIISKLDQ 318
             +     R A       +            + Q +P  + L+KD    VR      + +
Sbjct: 374 IKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGR 433

Query: 319 VNQVIGIDLLSQSLLPAIVE 338
           + +++    ++   L  +++
Sbjct: 434 ICELLPEAAINDVYLAPLLQ 453

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.0 bits (115), Expect = 8e-07
 Identities = 35/268 (13%), Positives = 72/268 (26%), Gaps = 17/268 (6%)

Query: 43  SLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIY 102
           SL    +   +     + + +V           RV+A              ++T +    
Sbjct: 200 SLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPAL 259

Query: 103 TQLCQ----DDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVE 158
             +       D+  V                      D+     +  +  +         
Sbjct: 260 FAITIEAMKSDIDEVALQGIEFWSNVCDEEM------DLAIEASEAAEQGRPPEHTSKFY 313

Query: 159 GCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPA 218
              AL  L+     +        + + D         A     L      +     ++P 
Sbjct: 314 AKGALQYLVP----ILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPF 369

Query: 219 YVRLLRDNEAEVRIAAA---GKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALAS 275
               +++ +   R AA    G + +       +  +   +P + EL  D S  VR   A 
Sbjct: 370 IKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAW 429

Query: 276 VIMGMAPLLGKDATIEQLLPIFLSLLKD 303
            +  +  LL + A  +  L   L  L +
Sbjct: 430 TVGRICELLPEAAINDVYLAPLLQCLIE 457

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.6 bits (114), Expect = 1e-06
 Identities = 50/410 (12%), Positives = 115/410 (28%), Gaps = 54/410 (13%)

Query: 61  IPLVKRLAAGEWFTARVSA-----CGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRR 115
              V R+AAG      +++        +   + +     + E+++   Q    +      
Sbjct: 48  NSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTE-TYRPS 106

Query: 116 SAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDS--VRLLAVEGCAALGKLLEPQDCV 173
           SA+  +   A    P +   +++        +   +  ++   +E    + + ++P+   
Sbjct: 107 SASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQ 166

Query: 174 AHILPVIVNFSQ-----DKSWRVRYMVANQLYELCEAVGP----EPTRMDLVPAYVRLLR 224
                ++    Q     + S  V+    N L    E        E  R  ++       +
Sbjct: 167 DKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQ 226

Query: 225 DNEAEVRIAAAGKVTKFCRILNPELA---IQHILPCVKELSSDSSQHVRSALASVIMGMA 281
             +  VR+AA   + K   +    +       +     E        V          + 
Sbjct: 227 CPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVC 286

Query: 282 -----------------------PLLGKDATIEQLLPIFLSL-------LKDEFPDVRLN 311
                                          ++ L+PI             D+  +    
Sbjct: 287 DEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKA 346

Query: 312 IISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKL 371
               L  +      D++   L P I E  ++  WR R A +     +            +
Sbjct: 347 AGVCLMLLATCCEDDIVPHVL-PFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV 405

Query: 372 GALC---MQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMI 418
                  ++ ++D    +RD AA  + R+ E              +L+ +
Sbjct: 406 IQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCL 455

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.1 bits (110), Expect = 3e-06
 Identities = 64/402 (15%), Positives = 121/402 (30%), Gaps = 61/402 (15%)

Query: 129 EPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKS 188
               +K  ++      T     + + +A   CA +     P+     +  V    S +  
Sbjct: 86  ARREVKNYVLQTLGTETYRPSSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHM 145

Query: 189 WRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEA--EVRIAAAGKVTKFCRILN 246
                     + +  +    +    +++ A ++ +R  E    V++AA   +        
Sbjct: 146 KESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTK 205

Query: 247 P----ELAIQHILPCVKELSSDSSQHVRSALASVI---MGMAPLLGKDATIEQLLPIFLS 299
                E     I+  V E +      VR A    +   M +     +      L  I + 
Sbjct: 206 ANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIE 265

Query: 300 LLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLA 359
            +K +  +V L             GI+  S      +    E      +    E+     
Sbjct: 266 AMKSDIDEVALQ------------GIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFY 313

Query: 360 SQLGVGFFDDKLGALCMQ---WLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLE 416
           ++  + +    L     +      D  ++   AA   L  LA     +  + H+ P + E
Sbjct: 314 AKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDI-VPHVLPFIKE 372

Query: 417 MINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLI 476
            I NP + YR   + A   +                                      L 
Sbjct: 373 HIKNPDWRYRDAAVMAFGCILEGPEPSQ------------------------------LK 402

Query: 477 PIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVM 518
           P+V Q+M      P L+EL +DP V VR  A   +  I  ++
Sbjct: 403 PLVIQAM------PTLIELMKDPSVVVRDTAAWTVGRICELL 438

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.6 bits (93), Expect = 5e-04
 Identities = 46/348 (13%), Positives = 100/348 (28%), Gaps = 38/348 (10%)

Query: 173 VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRD--NEAEV 230
            A    ++ N        +R     QL +L      +           ++L D   + E 
Sbjct: 3   TAEFAQLLENSILSPDQNIRLTSETQLKKLSNDNFLQ-----FAGLSSQVLIDENTKLEG 57

Query: 231 RIAAAGKVTKFCRILNPELAIQHILPCVKELS---------------SDSSQHVRSALAS 275
           RI AA  +       +     Q     + ++S                     + +A A 
Sbjct: 58  RILAALTLKNELVSKDSVKTQQFAQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQ 117

Query: 276 VIMGMAPLLGKDATIEQLLPIFLSLLKDEFPD-VRLNIISKLDQVNQVIGIDLLS----- 329
           +I  +A +        +L+ I +     E P+ V+   +  L  + +       +     
Sbjct: 118 LIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSS 177

Query: 330 QSLLPAIVELAEDRHW--RVRLAIIEYIPLLASQLGVGFFDDKLGALCMQW----LQDKV 383
            ++L AIV+ A+       VRLA +  +      +      +      MQ      Q + 
Sbjct: 178 NNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAED 237

Query: 384 YSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE 443
             ++ AA   L ++  ++                I              +   + +   E
Sbjct: 238 IEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEE 297

Query: 444 ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPC 491
           I  +  L     +               ++ ++P +   +  +   P 
Sbjct: 298 IDIAYELAQFPQS----PLQSYNFALSSIKDVVPNLLNLLTRQNEDPE 341

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Length = 276

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

 Score = 39.8 bits (91), Expect = 5e-04
 Identities = 39/271 (14%), Positives = 80/271 (29%), Gaps = 42/271 (15%)

Query: 104 QLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAAL 163
           +L  D   + R S+A  L              D + +  +   D     R +       L
Sbjct: 26  RLLDDHNSLKRISSARVLQLRG--------GQDAVRLAIEFCSDKNYIRRDIGAF---IL 74

Query: 164 GKLLEPQDCVAHILPVIVN-FSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRL 222
           G++   + C  ++  ++ N    DKS  VR        + C+          +V      
Sbjct: 75  GQIKICKKCEDNVFNILNNMALNDKSACVRATAIESTAQRCK--KNPIYSPKIVEQSQIT 132

Query: 223 LRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAP 282
             D    VR A A  ++         L I  +     ++ + ++  +             
Sbjct: 133 AFDKSTNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNWAAFAININKYDNSDIRDC 192

Query: 283 LL-----------------GKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI 325
            +                       +++L +    LK     V  +II    +       
Sbjct: 193 FVEMLQDKNEEVRIEAIIGLSYRKDKRVLSVLCDELKK--NTVYDDIIEAAGE------- 243

Query: 326 DLLSQSLLPAIVE-LAEDRHWRVRLAIIEYI 355
            L  ++LLP +   L +     +  + I+ +
Sbjct: 244 -LGDKTLLPVLDTMLYKFDDNEIITSAIDKL 273

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Length = 276

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

 Score = 39.5 bits (90), Expect = 6e-04
 Identities = 45/294 (15%), Positives = 88/294 (29%), Gaps = 45/294 (15%)

Query: 220 VRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMG 279
            RLL D+ +  RI++A       R+L      Q  +    E  SD +   R   A ++  
Sbjct: 25  FRLLDDHNSLKRISSA-------RVLQ-LRGGQDAVRLAIEFCSDKNYIRRDIGAFILGQ 76

Query: 280 MAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVEL 339
           +     K         +    L D+   VR   I    Q  +     + S  ++      
Sbjct: 77  IKI--CKKCEDNVFNILNNMALNDKSACVRATAIESTAQRCK--KNPIYSPKIVEQSQIT 132

Query: 340 AEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAE 399
           A D+   VR A    I        +         + +    +       A A N+ +   
Sbjct: 133 AFDKSTNVRRATAFAIS------VINDKATIPLLINLLKDPNGDVRNWAAFAININKYDN 186

Query: 400 EFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKD 459
               +  ++ +  +  E+                              R+L V+ +  K 
Sbjct: 187 SDIRDCFVEMLQDKNEEVRIEAIIGLSY----------------RKDKRVLSVLCDELKK 230

Query: 460 RVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVE-LTEDPDVDVRFFATQAIQ 512
               +  ++ +    L         +KT+ P L   L +  D ++   A   ++
Sbjct: 231 --NTVYDDIIEAAGELG--------DKTLLPVLDTMLYKFDDNEIITSAIDKLK 274

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	521
d1b3ua_	588	Constant regulatory domain of protein phosphatase	100.0
d1b3ua_	588	Constant regulatory domain of protein phosphatase	100.0
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	99.96
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	99.92
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	99.92
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	99.91
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	99.91
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	99.91
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	99.9
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.89
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	99.88
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.87
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.85
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.85
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.8
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	99.79
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	99.75
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.73
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	99.71
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	99.7
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	99.69
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	99.67
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	99.6
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	99.55
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	99.29
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	99.27
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	99.26
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	99.18
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.18
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	99.16
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	99.08
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.07
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	98.81
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	98.74
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	98.25
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	98.05
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	95.22
d2b6ca1	213	Hypothetical protein EF3068 {Enterococcus faecalis	93.83
d2b6ca1	213	Hypothetical protein EF3068 {Enterococcus faecalis	93.03
d1ujka_	145	ADP-ribosylation factor binding protein Gga1 {Huma	92.6
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	91.9
d1dvpa1	145	Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7	91.51
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	90.89
d1juqa_	151	ADP-ribosylation factor binding protein Gga3 {Huma	88.83
d1mhqa_	143	ADP-ribosylation factor binding protein Gga2 {Huma	87.97
d1ujka_	145	ADP-ribosylation factor binding protein Gga1 {Huma	85.02
d1dvpa1	145	Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7	84.36
d1mhqa_	143	ADP-ribosylation factor binding protein Gga2 {Huma	83.87
d1w9ca_	321	Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [Tax	82.46

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-57  Score=462.50  Aligned_cols=515  Identities=57%  Similarity=0.955  Sum_probs=486.5

Q ss_pred             ChhhhhccccCCCcchhHHhhhhHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHHHhHHHHHHHhhcCCCCcchhhhh
Q 009975            1 MAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSAC   80 (521)
Q Consensus         1 ~a~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~p~i~~~~~~~~~~~r~~~~   80 (521)
                      +|++||.+.+++|++++.+.+++.+..+++++++.||..|++++..++..++++.+.+.+.|++.++.++++...|.+++
T Consensus        68 ~~~~l~~~~~~~~~~~~~~~ll~~l~~l~~~~~~~Vr~~a~~~l~~i~~~~~~~~~~~~l~p~i~~L~~~~~~~~r~~a~  147 (588)
T d1b3ua_          68 LAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSAC  147 (588)
T ss_dssp             HHHHHTTCSGGGTSGGGGGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHG
T ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcccchHHHHHHH
Confidence            36899999999999999999999999999999999999999999999999999999999999999999998889999999


Q ss_pred             hhhhhhcCCCChHHHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCCChhHHHHHHHHH
Q 009975           81 GLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGC  160 (521)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l  160 (521)
                      .+++.++++.++.....+++.+.++++|+++.||+.++.+++.+++..+.+...+.++|.+..+.+|+++.||..++.++
T Consensus       148 ~ll~~~~~~~~~~~~~~l~~~~~~l~~D~~~~VR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l  227 (588)
T d1b3ua_         148 GLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEAC  227 (588)
T ss_dssp             GGHHHHTTTSCHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHH
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHhcCCchhhHHHHHHHH
Confidence            99999999988888899999999999999999999999999999999888888899999999999999999999999999


Q ss_pred             HHHhhhcChhhhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHH
Q 009975          161 AALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTK  240 (521)
Q Consensus       161 ~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~  240 (521)
                      ..++..++++.....++|.+..+++|++|.||..++++++.++..++++.....++|.+..+++|++++||..++.+++.
T Consensus       228 ~~i~~~~~~~~~~~~i~~~l~~~~~D~~~~Vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~  307 (588)
T d1b3ua_         228 VNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKE  307 (588)
T ss_dssp             HHHHHHSCHHHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred             HHhhccCCHHHHHHHHHHHHHHhcccccHHHHHHHHHhHHHHHHHhhhhhhhhhhhHHHHHHHhccchHHHHHHHHHHHH
Confidence            99999998887888899999999999999999999999999999888776667899999999999999999999999999


Q ss_pred             HHhhhCHH----HHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccChHHHHHhHHHHHHHhhcCCChHHHHHHHHHH
Q 009975          241 FCRILNPE----LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKL  316 (521)
Q Consensus       241 l~~~~~~~----~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l  316 (521)
                      +...++..    .+.+.++|.+.....|.++.+|..++.++..++..+|.+...+.++|.+...++|++++||..+..++
T Consensus       308 ~~~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~v~~~~~~~l  387 (588)
T d1b3ua_         308 FCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNL  387 (588)
T ss_dssp             HHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTC
T ss_pred             HHHHHhhhhhhhhhHHHHHHHHHHhhcCCChHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHH
Confidence            99877543    35578899999999999999999999999999999999888889999999999999999999999999


Q ss_pred             HHhhhhhchhhHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChhhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q 009975          317 DQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKR  396 (521)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~  396 (521)
                      +.+...+|...+.+.++|.+.+..+|.+|++|..+++.++.+++.+|.+.+.+.+.|.+..++.|+.+.||.+|+.+++.
T Consensus       388 ~~~~~~~~~~~~~~~ll~~l~~~~~d~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~D~~~~VR~~A~~~L~~  467 (588)
T d1b3ua_         388 DCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKK  467 (588)
T ss_dssp             HHHHHHSCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHH
T ss_pred             HHHHhhcchhhhhhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcChHhHHHHHHHHHHhhccCCchhHHHHHHHHHHH
Confidence            99999999888778999999999999999999999999999999999998889999999999999999999999999999


Q ss_pred             HHHHhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChHHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHH
Q 009975          397 LAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLI  476 (521)
Q Consensus       397 l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~  476 (521)
                      ++..+|.++....++|.+..+.++++|..|.+++.+++.+.+.++.+.+.++++|.+.++++|++++||.+++++++.+.
T Consensus       468 l~~~~~~~~~~~~i~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~ilp~ll~~~~D~v~nVR~~a~~~l~~i~  547 (588)
T d1b3ua_         468 LVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIG  547 (588)
T ss_dssp             HHHHHCHHHHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHG
T ss_pred             HHHHhCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence            99999999888899999999999999999999999999999988888888999999999999999999999999999999


Q ss_pred             hhhchHHHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHH
Q 009975          477 PIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSID  515 (521)
Q Consensus       477 ~~~~~~~~~~~~~~~l~~l~~D~~~~vr~~a~~al~~l~  515 (521)
                      ..++...+...+.|.+.++.+|+|.+||..|.+|++.|.
T Consensus       548 ~~~~~~~~~~~i~~~l~~L~~D~d~dVr~~A~~al~~l~  586 (588)
T d1b3ua_         548 PILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALTVLS  586 (588)
T ss_dssp             GGSCHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTT
T ss_pred             HHcCcHhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHh
Confidence            999888888999999999999999999999999998864

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.7e-47  Score=385.83  Aligned_cols=495  Identities=20%  Similarity=0.265  Sum_probs=386.9

Q ss_pred             hHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHHHhHHHHHHHhhcCCCCcchhhhhhhhhhhcCCC-ChHHHHHHHHH
Q 009975           23 PPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSA-PDILKTELRSI  101 (521)
Q Consensus        23 ~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~p~i~~~~~~~~~~~r~~~~~~~~~~~~~~-~~~~~~~l~~~  101 (521)
                      ..|..-+.++|..+|..|++.++.++..+++++..+.++|++.+..++++ .++..++..++.+.... .++....+++.
T Consensus        13 ~~l~~~l~~~~~~~R~~a~~~l~~ia~~lg~~~~~~~lip~l~~~~~~~~-ev~~~~~~~l~~~~~~~~~~~~~~~ll~~   91 (588)
T d1b3ua_          13 AVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDED-EVLLALAEQLGTFTTLVGGPEYVHCLLPP   91 (588)
T ss_dssp             HHHHHHTTCSCHHHHHHHHHTHHHHHHHSCHHHHHHTHHHHHHHTCCCCH-HHHHHHHHHHTTCSGGGTSGGGGGGGHHH
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHHhCcHhhHHHHHHHHHHHhcCcH-HHHHHHHHHHHHHHHHcCChhHHHHHHHH
Confidence            33555567789999999999999999999999999999999999887654 46666666565554432 23357788999


Q ss_pred             HHHhcCCCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcChhhhhhhhHHHHH
Q 009975          102 YTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIV  181 (521)
Q Consensus       102 l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~  181 (521)
                      +..++.++++.||..|+.+++.++...+.+...+.+.|++..+..++....|..|...++.++...++. ....+++.+.
T Consensus        92 l~~l~~~~~~~Vr~~a~~~l~~i~~~~~~~~~~~~l~p~i~~L~~~~~~~~r~~a~~ll~~~~~~~~~~-~~~~l~~~~~  170 (588)
T d1b3ua_          92 LESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSA-VKAELRQYFR  170 (588)
T ss_dssp             HHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHH-HHHHHHHHHH
T ss_pred             HHHHccCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhHH-HHHHHHHHHH
Confidence            999999999999999999999999988888888889999999999988899999999999998887654 5677899999


Q ss_pred             HhcCCCChHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhhhHHHHHh
Q 009975          182 NFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKEL  261 (521)
Q Consensus       182 ~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~  261 (521)
                      ++++|+++.||+.++..++.++...+.+...+.++|.+.++++|+++.||..|+.++..++...+.+.....++|.+..+
T Consensus       171 ~l~~D~~~~VR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~i~~~l~~~  250 (588)
T d1b3ua_         171 NLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQA  250 (588)
T ss_dssp             HHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHHHHHHTHHHHHHH
T ss_pred             HHhccCCHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHhhccCCHHHHHHHHHHHHHHh
Confidence            99999999999999999999999888776678899999999999999999999999999999999888788899999999


Q ss_pred             ccCCcHHHHHHHHHHHHccccccChHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchhh----HhhhHHHHHH
Q 009975          262 SSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL----LSQSLLPAIV  337 (521)
Q Consensus       262 ~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~----~~~~~~~~l~  337 (521)
                      ++|++|+||..++++++.++..++.+...+.++|.+..+++|++++||..++.+++.++..++.+.    ..+.++|.+.
T Consensus       251 ~~D~~~~Vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~l~~~~~~~~~~~~i~~~l~  330 (588)
T d1b3ua_         251 AEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIK  330 (588)
T ss_dssp             HTCSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHH
T ss_pred             cccccHHHHHHHHHhHHHHHHHhhhhhhhhhhhHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHH
Confidence            999999999999999999999999888788899999999999999999999999999887765332    3356777777


Q ss_pred             HHhcCCChHHHHHHHHHhHHHHhhhChhhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhh
Q 009975          338 ELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEM  417 (521)
Q Consensus       338 ~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~  417 (521)
                      ....|.++.+|..++..+..++..+|.+.+.+.++|.+...++|++++||..++.+++.+...+|.....+.++|.+...
T Consensus       331 ~~~~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~v~~~~~~~l~~~~~~~~~~~~~~~ll~~l~~~  410 (588)
T d1b3ua_         331 ELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVEL  410 (588)
T ss_dssp             HHHTCSCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred             HhhcCCChHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhcchhhhhhHHHHHHHHH
Confidence            77788888888887777777777776665555566666666666666666666666666655555555555555555555


Q ss_pred             hcCcchHHHHHHHHHHHHhhcccChHHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHh--------------------
Q 009975          418 INNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIP--------------------  477 (521)
Q Consensus       418 l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~--------------------  477 (521)
                      ++|++|++|..++.+++.++..+|.+.+.+.+.|.+..++.|+.+.||.+|+++++.++.                    
T Consensus       411 ~~d~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~D~~~~VR~~A~~~L~~l~~~~~~~~~~~~i~~~l~~~~~  490 (588)
T d1b3ua_         411 AEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSG  490 (588)
T ss_dssp             HTCSSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHTHHHHHHTTT
T ss_pred             HhcccHHHHHHHHHHHHHHHHHcChHhHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhc
Confidence            555555555555555555555555555555555555555555555555555555555544                    


Q ss_pred             -------------------hhchHHHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHHhhc
Q 009975          478 -------------------IVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMM  519 (521)
Q Consensus       478 -------------------~~~~~~~~~~~~~~l~~l~~D~~~~vr~~a~~al~~l~~~~~  519 (521)
                                         .++.+.+.+.++|.+.++++|++++||..++++++.+.+...
T Consensus       491 ~~~~~~R~~~~~~l~~l~~~~~~~~~~~~ilp~ll~~~~D~v~nVR~~a~~~l~~i~~~~~  551 (588)
T d1b3ua_         491 DPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILD  551 (588)
T ss_dssp             CSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSC
T ss_pred             CCCHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcC
Confidence                               444444556677777777777777788777777777766543

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.3e-28  Score=259.88  Aligned_cols=514  Identities=17%  Similarity=0.123  Sum_probs=367.6

Q ss_pred             hhhhhccccCCCcchhHHhhhhHHhhhhcCchhHHHHHHHHHHHHHHhhcChh-------HHHHhHHHHHHHhhcCCCCc
Q 009975            2 AEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRES-------DLVDWYIPLVKRLAAGEWFT   74 (521)
Q Consensus         2 a~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~-------~~~~~l~p~i~~~~~~~~~~   74 (521)
                      |..++.++.. +++..|+.+++.|.+.+.+++..+|..|+.+++.+++.....       ...+.++|.+.+..++++..
T Consensus       109 ~~~i~~i~~~-~~~~~Wpell~~L~~~l~s~~~~~~~~al~~L~~i~e~~~~~~~~~~~~~~~~~ll~~ll~~~~~~~~~  187 (888)
T d1qbkb_         109 GILITTIASK-GELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPK  187 (888)
T ss_dssp             TTTTHHHHTT-TSSCSSTTTSTTTTTSSTGGGSSCSSSSSTTTHHHHGGGHHHHHTC---CCSTTTTHHHHTGGGSSSSC
T ss_pred             HHHHHHHHHH-hCccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHHHHHhhCCCHH
Confidence            4456666663 446778899999999888899999999999999999864321       11245788888888888788


Q ss_pred             chhhhhhhhhhhcCCCChH---HHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCch--hhHHHHHHHHHHhhcCCC
Q 009975           75 ARVSACGLFHIAYPSAPDI---LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPA--HLKTDIMSIFEDLTQDDQ  149 (521)
Q Consensus        75 ~r~~~~~~~~~~~~~~~~~---~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~l~~d~~  149 (521)
                      +|..++..+..+....+..   ....+++.+.....|+++.||+.++.++..++...+..  ...+.+++.+.....|++
T Consensus       188 vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~l~~~l~~i~~~~l~~~~~~~  267 (888)
T d1qbkb_         188 IRSHAVACVNQFIISRTQALMLHIDSFTENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQD  267 (888)
T ss_dssp             SSSTTTHHHHGGGGCCCSTTCSHHHHCSHHHHTTSSCCCSSSTTHHHHTTTTTSCSCTTTTTTTTTTTTTTTTTTTTSSC
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCCc
Confidence            8988887776665443322   46778888889999999999999999998887655432  233456666677778899


Q ss_pred             hhHHHHHHHHHHHHhhhcChh----hhhhhhHHHHHHhc-----------------------------------------
Q 009975          150 DSVRLLAVEGCAALGKLLEPQ----DCVAHILPVIVNFS-----------------------------------------  184 (521)
Q Consensus       150 ~~vr~~a~~~l~~l~~~~~~~----~~~~~l~~~l~~~~-----------------------------------------  184 (521)
                      +.+|..|++.+..+++.-...    ...+.+.|.+....                                         
T Consensus       268 e~v~~~a~ef~~~~~e~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  347 (888)
T d1qbkb_         268 ENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEEDETIPDSEQDIRPRFHRSRTVAQQH  347 (888)
T ss_dssp             HHHHHHHHHHHCCCCSGGGGTTTTTTSTTTTTTTTTTSSCCSSTTHHHHTTTSSCCTTSCCCGGGCCCCCCCCCCCCCCC
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhcchHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHh
Confidence            999999999887776431100    01111222111100                                         


Q ss_pred             -------------------CCCChHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhh
Q 009975          185 -------------------QDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRIL  245 (521)
Q Consensus       185 -------------------~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~  245 (521)
                                         .+..|.+|..++.++..++...+++. .+.++|.+.+.+.+++|.+|.+|+.+++.+++..
T Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~L~~l~~~~~~~i-l~~~l~~l~~~l~s~~~~~reaa~~alg~i~eg~  426 (888)
T d1qbkb_         348 DEDGIEEEDDDDDEIDDDDTISDWNLRKCSAAALDVLANVYRDEL-LPHILPLLKELLFHHEWVVKESGILVLGAIAEGC  426 (888)
T ss_dssp             TTC-----CHHHHTTCCCSTTSCCSSHHHHHHHSTTTTTTCCSSS-HHHHHHHHHHTTTSSSHHHHHHHHHHHHHHTTTS
T ss_pred             hhhhhhhcccchhhhhhhhhhhhhhHHHHHHHHHhhHhhhhHHHH-HHHHHHHHHHhhccchhHHHHHHHHHhhhhhhhH
Confidence                               01235689989888888877666554 3678899999999999999999999999988754


Q ss_pred             CHH--HHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccCh---HHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhh
Q 009975          246 NPE--LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK---DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVN  320 (521)
Q Consensus       246 ~~~--~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~  320 (521)
                      ...  ...+.++|.+...++|+++.||..+++++++++.....   +.....+++.+...+.|+++.|+.+|+.++..+.
T Consensus       427 ~~~~~~~l~~li~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~  506 (888)
T d1qbkb_         427 MQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLE  506 (888)
T ss_dssp             HHHHTTTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTHHHHHSSCHHHHTTTHHHHHHHHHSSSCHHHHHHHHHHHHHHH
T ss_pred             HHHhcccchhhhHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            322  33567889999999999999999999999998875533   2345678899999999999999999999999998


Q ss_pred             hhhchhh--HhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChh----hhHHHHHHHHHHHc---------------
Q 009975          321 QVIGIDL--LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG----FFDDKLGALCMQWL---------------  379 (521)
Q Consensus       321 ~~~~~~~--~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~----~~~~~l~~~l~~~l---------------  379 (521)
                      +..+...  +.+.+++.+...+++.....+..+.++++.++...+..    .+.+.++|.+....               
T Consensus       507 ~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~le  586 (888)
T d1qbkb_         507 EEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLE  586 (888)
T ss_dssp             HHHTTSSGGGHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHGGGGCSHHHHHHHHHHHHHHHTTSCTTCTTHHHHHH
T ss_pred             HHhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHhcccchHHHHHHHH
Confidence            7766432  23566677777777777777777777777666554432    12222333222211               


Q ss_pred             ---------------------------------------------CCCcHHHHHHHHHHHHHHHHHhCHHH---H-Hhhh
Q 009975          380 ---------------------------------------------QDKVYSIRDAAANNLKRLAEEFGPEW---A-MQHI  410 (521)
Q Consensus       380 ---------------------------------------------~d~~~~vr~~a~~~l~~l~~~~~~~~---~-~~~l  410 (521)
                                                                   .+++.++...+...++.+.+.+|...   . ...+
T Consensus       587 ~l~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l  666 (888)
T d1qbkb_         587 CLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNI  666 (888)
T ss_dssp             HHHHHHHHSTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHTTTTHHHHHTSCH
T ss_pred             HHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhH
Confidence                                                         11233344445555555555555432   1 1346


Q ss_pred             HHHHHhhhcCcchHHHHHHHHHHHHhhcccChHH--HhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchH--HHHh
Q 009975          411 TPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI--TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--MVEK  486 (521)
Q Consensus       411 ~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~--~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~--~~~~  486 (521)
                      ++.+...+++.++.+|+.+..+++.++..++...  +.+.++|.+...++++.+.|+.++++++|.++...|.+  .+.+
T Consensus       667 ~~~l~~~l~~~~~~vr~~a~~llgdl~~~~~~~~~~~l~~~~~~l~~~L~~~~~~v~~~a~~~ig~ia~~~~~~~~py~~  746 (888)
T d1qbkb_         667 LTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIP  746 (888)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCGGGHHHHHHHHHHHHHHHHHTGGGGGGGSH
T ss_pred             HHHHHHHhCCCChHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence            7777788889999999999999999998766543  56789999999999999999999999999999887754  3346


Q ss_pred             hHHHHHHHhcCCC--CccHHHHHHHHHHHHHHh
Q 009975          487 TIRPCLVELTEDP--DVDVRFFATQAIQSIDHV  517 (521)
Q Consensus       487 ~~~~~l~~l~~D~--~~~vr~~a~~al~~l~~~  517 (521)
                      .+++.|.+.++++  ..+|+.+++.|++.+...
T Consensus       747 ~il~~L~~il~~~~~~~~v~~n~~~~lgrl~~~  779 (888)
T d1qbkb_         747 MVLHQLVEIINRPNTPKTLLENTAITIGRLGYV  779 (888)
T ss_dssp             HHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHH
Confidence            6777777766654  445899999999988754

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.3e-21  Score=213.03  Aligned_cols=502  Identities=13%  Similarity=0.101  Sum_probs=351.6

Q ss_pred             hhHHhhhhHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHHHhHHHHHHHhhcCCCCcchhhhhhhhhhhcCCC-----
Q 009975           16 EHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSA-----   90 (521)
Q Consensus        16 ~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~p~i~~~~~~~~~~~r~~~~~~~~~~~~~~-----   90 (521)
                      +....+.+.+.++++|+++.||..|+++++.++..++++.+ +.+++.+...+.+++...|..+...+..+...+     
T Consensus        41 ~~~~~i~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~~~~~~-~~l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~  119 (1207)
T d1u6gc_          41 DSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQV-ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASS  119 (1207)
T ss_dssp             THHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHHH-HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC----
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCcHhhH-HHHHHHHHHHhcCCchhhhHHHHHHHHHHHHhcccccc
Confidence            44556888888899999999999999999999999887765 455665555555555555655444433332211     


Q ss_pred             ----ChHHHHHHHHHHHHhc-CCCChHHHHHHHHhHHHHHHhhCch--hhHHHHHHHHHHhhcCCChhHHHHHHHHHHHH
Q 009975           91 ----PDILKTELRSIYTQLC-QDDMPMVRRSAASNLGKFAATVEPA--HLKTDIMSIFEDLTQDDQDSVRLLAVEGCAAL  163 (521)
Q Consensus        91 ----~~~~~~~l~~~l~~l~-~~~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l  163 (521)
                          .......+.+.+.... ..+++.+|..++..++.+...++..  .....+++.+...+.+++..||..|+.+++.+
T Consensus       120 ~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~~~g~~l~~~~~~il~~l~~~l~~~~~~vR~~A~~~l~~l  199 (1207)
T d1u6gc_         120 GSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHL  199 (1207)
T ss_dssp             -CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence                2224555666666544 4568899999999999999988852  35677888888889999999999999999999


Q ss_pred             hhhcChhhhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCcc--ccchHHHHHHhcCCChHHHHHHHHHhHHHH
Q 009975          164 GKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPT--RMDLVPAYVRLLRDNEAEVRIAAAGKVTKF  241 (521)
Q Consensus       164 ~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~--~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l  241 (521)
                      +...+++.....+-.++..+..+.++.+|..++++++.+++..+....  .+.++|.+.+.+++++.++|..++.++..+
T Consensus       200 ~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~r~~al~~l~~l  279 (1207)
T d1u6gc_         200 VMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESF  279 (1207)
T ss_dssp             TTTC----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHH
T ss_pred             HHHCCHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHH
Confidence            998877644444444555566677778889999999999987765332  368999999999999999999999999998


Q ss_pred             HhhhCHH--HHHHhhhHHHHH-------------------------------------hccCCcHHHHHHHHHHHHcccc
Q 009975          242 CRILNPE--LAIQHILPCVKE-------------------------------------LSSDSSQHVRSALASVIMGMAP  282 (521)
Q Consensus       242 ~~~~~~~--~~~~~~~~~l~~-------------------------------------~~~d~~~~vr~~~~~~l~~i~~  282 (521)
                      ....+.+  .+...+++.+..                                     ...|.+|++|..+++++..+..
T Consensus       280 ~~~~~~~~~~~~~~ii~~~l~~l~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~vR~~a~~~L~~l~~  359 (1207)
T d1u6gc_         280 VRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVS  359 (1207)
T ss_dssp             HHCTTCCCHHHHHHHHHHHTTCCCCC------------------------------------CTTHHHHHHHHHHHHHHT
T ss_pred             HHhChhhhhhhHHHHHHHHHHHHhcCcchhhhhHHHHHhhhhhhccchhhhhHHHHHhhhhhhhHHHHHHHHHHHHhHHH
Confidence            8876532  122222222211                                     1245679999999999999887


Q ss_pred             ccChH--HHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhch---------------------hhHhhhHHHHHHHH
Q 009975          283 LLGKD--ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---------------------DLLSQSLLPAIVEL  339 (521)
Q Consensus       283 ~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~---------------------~~~~~~~~~~l~~~  339 (521)
                      ..++.  ...+.+.|.+...+.|.++.||..+..++..+....+.                     ......+++.+.+.
T Consensus       360 ~~~~~l~~~~~~~~~~L~~~l~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~  439 (1207)
T d1u6gc_         360 TRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQ  439 (1207)
T ss_dssp             TCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhccchhhhhhchHHHHhhcchHHHHHHHhHHHHHHHHHH
Confidence            76652  34567899999999999999999999999888654321                     11224566777777


Q ss_pred             hcCCChHHHHHHHHHhHHHHhhhChh--hhHHHHHHHHHHHcCCC--cHHHHHHHHHHHHHHHHHhCHH---HHHhhhHH
Q 009975          340 AEDRHWRVRLAIIEYIPLLASQLGVG--FFDDKLGALCMQWLQDK--VYSIRDAAANNLKRLAEEFGPE---WAMQHITP  412 (521)
Q Consensus       340 ~~~~~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~--~~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~  412 (521)
                      ..+.++.+|..++..+..+....+..  .+...+++.+...+.|.  ...+|..++.++..+....+..   .+...+.+
T Consensus       440 l~~~~~~~r~~~~~~l~~l~~~~~~~l~~~l~~~~~~i~~~l~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~l~~  519 (1207)
T d1u6gc_         440 MKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVP  519 (1207)
T ss_dssp             TTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHH
T ss_pred             hcCCchhHHHHHHHHHHHHHHHcchHHHHhhHhhHHHHHHHHhcccchhHHHHHHHHHHHHHHHhccHHHHHHHHHhhhh
Confidence            88999999999999999998877653  34566777777777764  4567888888888887665543   23456777


Q ss_pred             HHHhhhcCcchHHHHHHHHHHHHhhcccCh---------HHHhhcHHHHHHhhcC--CCCchHHHHHHHHHHHHHhhhch
Q 009975          413 QVLEMINNPHYLYRMTILRAISLLAPVMGS---------EITCSRLLPVVINASK--DRVPNIKFNVAKVLQSLIPIVDQ  481 (521)
Q Consensus       413 ~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~---------~~~~~~il~~l~~~l~--d~~~~VR~~a~~~l~~~~~~~~~  481 (521)
                      .+...+.++.+.++..++.+++.+...++.         ..+...+++.+...+.  |....+|..++.+++.+....+.
T Consensus       520 ~~~~~~~~~~~~i~~~al~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~e~~~~al~~l~~l~~~~~~  599 (1207)
T d1u6gc_         520 PVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGD  599 (1207)
T ss_dssp             HHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGG
T ss_pred             hHHHHHccccHHHHHHHHHHHHHHHHHhhhhccchhhhhHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhh
Confidence            777778888888888888877777654332         1223445555555443  44566787777777776544321


Q ss_pred             H------------------------------------------HHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHHhh
Q 009975          482 S------------------------------------------MVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVM  518 (521)
Q Consensus       482 ~------------------------------------------~~~~~~~~~l~~l~~D~~~~vr~~a~~al~~l~~~~  518 (521)
                      .                                          .+...+.+.+...+.+.++.+|..+..++..+.+..
T Consensus       600 ~~~~~~~~~l~~l~~~l~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~r~~al~~L~~l~~~~  678 (1207)
T d1u6gc_         600 NLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNY  678 (1207)
T ss_dssp             GCCTHHHHHHHHHHHHTTSSSHHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHC
T ss_pred             hhHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhc
Confidence            1                                          112344455555667777788888877777766543

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.2e-21  Score=206.33  Aligned_cols=444  Identities=13%  Similarity=0.113  Sum_probs=325.4

Q ss_pred             cchhhhhhhhhhhcCCCChHHHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCc--hhhHHHHHHHHHHhhcCCChh
Q 009975           74 TARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP--AHLKTDIMSIFEDLTQDDQDS  151 (521)
Q Consensus        74 ~~r~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~l~~d~~~~  151 (521)
                      ..|..+...+..+....++.....+++.+.+.+++++|.+|++|+.++|.+++....  ....+.++|.+...++|+++.
T Consensus       372 ~~r~~a~~~L~~l~~~~~~~il~~~l~~l~~~l~s~~~~~reaa~~alg~i~eg~~~~~~~~l~~li~~l~~~l~d~~~~  451 (888)
T d1qbkb_         372 NLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKAL  451 (888)
T ss_dssp             SSHHHHHHHSTTTTTTCCSSSHHHHHHHHHHTTTSSSHHHHHHHHHHHHHHTTTSHHHHTTTHHHHHHHHHHHTTSSCHH
T ss_pred             hHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhhhHHHHhcccchhhhHHHHHhccCCCHH
Confidence            456666666666666666667888999999999999999999999999998754322  234577889999999999999


Q ss_pred             HHHHHHHHHHHHhhhcChh---hhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCccc--cchHHHHHHhcCCC
Q 009975          152 VRLLAVEGCAALGKLLEPQ---DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR--MDLVPAYVRLLRDN  226 (521)
Q Consensus       152 vr~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~--~~l~~~l~~~l~d~  226 (521)
                      ||..++.+++.+++.+.+.   .....+++.+...+.|+++.||..++.++..++...+....+  +.+++.+...+++.
T Consensus       452 Vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~  531 (888)
T d1qbkb_         452 VRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKY  531 (888)
T ss_dssp             HHHHHHHHHHHTHHHHHSSCHHHHTTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTTSSGGGHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhh
Confidence            9999999999998765432   345568888888999999999999999999999888766432  56778888888888


Q ss_pred             hHHHHHHHHHhHHHHHhhhCH----HHHHHhhhHHHHHhcc---CCcHHHHHHHHHHHHccccccChHH------HHHhH
Q 009975          227 EAEVRIAAAGKVTKFCRILNP----ELAIQHILPCVKELSS---DSSQHVRSALASVIMGMAPLLGKDA------TIEQL  293 (521)
Q Consensus       227 ~~~vr~~a~~~l~~l~~~~~~----~~~~~~~~~~l~~~~~---d~~~~vr~~~~~~l~~i~~~~~~~~------~~~~l  293 (521)
                      +...+..+..+++.+....+.    ..+.+.++|.+.+...   +.+. .+..+.+++..++..++...      ..+.+
T Consensus       532 ~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-~~~~~le~l~~i~~~~~~~~~~~~~~~~~~~  610 (888)
T d1qbkb_         532 QHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDK-DLFPLLECLSSVATALQSGFLPYCEPVYQRC  610 (888)
T ss_dssp             CHHHHHHHHHHHHHHHHHHGGGGCSHHHHHHHHHHHHHHHTTSCTTCT-THHHHHHHHHHHHHHSTTTTHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHhcccchH-HHHHHHHHHHHHHHHhHHHHhhhHHHHHHHH
Confidence            888888888888888876643    3445566666655432   2222 23345566666655554422      11222


Q ss_pred             HHHHHHhh-------------cCCChHHHHHHHHHHHHhhhhhchhh--H--hhhHHHHHHHHhcCCChHHHHHHHHHhH
Q 009975          294 LPIFLSLL-------------KDEFPDVRLNIISKLDQVNQVIGIDL--L--SQSLLPAIVELAEDRHWRVRLAIIEYIP  356 (521)
Q Consensus       294 ~~~l~~~l-------------~d~~~~vr~~a~~~l~~~~~~~~~~~--~--~~~~~~~l~~~~~~~~~~vr~~~~~~l~  356 (521)
                      +..+...+             ...+.++...++..++.+.+.+|...  +  ...+++.+...+++.++.+|..+...++
T Consensus       611 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~llg  690 (888)
T d1qbkb_         611 VNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLG  690 (888)
T ss_dssp             HHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHhCCCChHHHHHHHHHHH
Confidence            22222111             23456677777888888887776432  1  1347788888899999999999999999


Q ss_pred             HHHhhhChh--hhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHHH--HHhhhHHHHHhhhcCcc--hHHHHHHH
Q 009975          357 LLASQLGVG--FFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW--AMQHITPQVLEMINNPH--YLYRMTIL  430 (521)
Q Consensus       357 ~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~~~~--~~~r~~a~  430 (521)
                      .++..++..  .+.+.++|.+...++++...|+..++.++|.++...|.+.  +.+.+++.+...+++++  ..++..++
T Consensus       691 dl~~~~~~~~~~~l~~~~~~l~~~L~~~~~~v~~~a~~~ig~ia~~~~~~~~py~~~il~~L~~il~~~~~~~~v~~n~~  770 (888)
T d1qbkb_         691 DLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTA  770 (888)
T ss_dssp             HHHHHCGGGTGGGHHHHHHHHHHTCCGGGHHHHHHHHHHHHHHHHHTGGGGGGGSHHHHHHHHHHHTCTTCCHHHHHHHH
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHcCCCccHHHHHHHH
Confidence            999888775  4667899999999999999999999999999998887653  34678888888887754  56889999


Q ss_pred             HHHHHhhcccChHH--HhhcHHHHHHhhcCC-CCchHHHHHHHHHHHHHhhhchHHHHhhHHHHHHHhcC--CCCccHHH
Q 009975          431 RAISLLAPVMGSEI--TCSRLLPVVINASKD-RVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTE--DPDVDVRF  505 (521)
Q Consensus       431 ~~l~~l~~~~~~~~--~~~~il~~l~~~l~d-~~~~VR~~a~~~l~~~~~~~~~~~~~~~~~~~l~~l~~--D~~~~vr~  505 (521)
                      .++|.++...+...  +.+.+++.+...+.+ .+..-|..+...+..+...-+ +...+.+...+...++  ++.++++.
T Consensus       771 ~~lgrl~~~~p~~~~~~l~~~~~~~~~~l~~~~d~~ek~~~~~g~~~~i~~~p-~~~~~~l~~~~~~i~~~~~~~~~~~~  849 (888)
T d1qbkb_         771 ITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNP-SGVIQDFIFFCDAVASWINPKDDLRD  849 (888)
T ss_dssp             HHHHHHHHHCHHHHGGGGGGTHHHHHHHHTTSCCSHHHHHHHHHHHHHHHHCG-GGTGGGHHHHHHHHTTCSSCCHHHHH
T ss_pred             HHHHHHHHHCHHHHHhhHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHCc-HHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence            99999998766543  457788877777655 344558889999988887533 3333444444444443  45677888


Q ss_pred             HHHHHHHHHHHhhc
Q 009975          506 FATQAIQSIDHVMM  519 (521)
Q Consensus       506 ~a~~al~~l~~~~~  519 (521)
                      .....+..+.+.++
T Consensus       850 ~~~~~l~~~~~~~~  863 (888)
T d1qbkb_         850 MFCKILHGFKNQVG  863 (888)
T ss_dssp             HHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHcC
Confidence            88888888777664

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=1.5e-20  Score=197.26  Aligned_cols=494  Identities=15%  Similarity=0.146  Sum_probs=345.0

Q ss_pred             hhhhHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHHHhHHHHHHHhhcC--CCCcchhhhhhhhhhhcC---------
Q 009975           20 VLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAG--EWFTARVSACGLFHIAYP---------   88 (521)
Q Consensus        20 ~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~p~i~~~~~~--~~~~~r~~~~~~~~~~~~---------   88 (521)
                      .+.+.|.+.+.++|+.+|..|.+.|..+.+.-.+     .+++.+.+...+  .+..+|..|...+.....         
T Consensus         5 ~~~~~L~~~~~s~d~~~r~~Ae~~L~~~~~~~~~-----~~~~~l~~il~~~~~~~~~r~~A~i~lkn~i~~~~~~~~~~   79 (861)
T d2bpta1           5 EFAQLLENSILSPDQNIRLTSETQLKKLSNDNFL-----QFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQ   79 (861)
T ss_dssp             HHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHCHH-----HHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHH
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCch-----HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhcccchhhhh
Confidence            4677788877788999999999999988765322     334444444443  244677777655544332         


Q ss_pred             -------CCChHHHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCCC-hhHHHHHHHHH
Q 009975           89 -------SAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQ-DSVRLLAVEGC  160 (521)
Q Consensus        89 -------~~~~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~-~~vr~~a~~~l  160 (521)
                             .++++.+..+...+.+.+.++++.||..++.+++.++....+...|+++++.+.+.+.+++ ..+|..++.++
T Consensus        80 ~~~~~~~~i~~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~i~~~~~p~~~wpeli~~L~~~~~s~~~~~~~~~al~~l  159 (861)
T d2bpta1          80 FAQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLAL  159 (861)
T ss_dssp             HHHHHHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHH
T ss_pred             HHhhhHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCcCchHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence                   2456667778888888888999999999999999998875555578999999988877654 57899999999


Q ss_pred             HHHhhhcChh--hhhhh---hHHHHHHhc--CCCChHHHHHHHHHHHHHHHHhCCC----ccccchHHHHHHhcCCChHH
Q 009975          161 AALGKLLEPQ--DCVAH---ILPVIVNFS--QDKSWRVRYMVANQLYELCEAVGPE----PTRMDLVPAYVRLLRDNEAE  229 (521)
Q Consensus       161 ~~l~~~~~~~--~~~~~---l~~~l~~~~--~d~~~~vR~~~~~~l~~i~~~~~~~----~~~~~l~~~l~~~l~d~~~~  229 (521)
                      +.+++..++.  .....   +++.+....  .+.+..+|..+..++..+...++..    .....+++.+.+.++++++.
T Consensus       160 ~~i~e~~~~~~~~~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  239 (861)
T d2bpta1         160 GYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIE  239 (861)
T ss_dssp             HHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHH
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHhHHhhhhhhHHHHhHHHHhcCCCHH
Confidence            9998876542  12223   333333322  4677899999999998876544322    12245677788888999999


Q ss_pred             HHHHHHHhHHHHHhhhCHH--HHHHh-hhHHHHHhccCCcHHHHHHHHHHHHccccccCh-------------------H
Q 009975          230 VRIAAAGKVTKFCRILNPE--LAIQH-ILPCVKELSSDSSQHVRSALASVIMGMAPLLGK-------------------D  287 (521)
Q Consensus       230 vr~~a~~~l~~l~~~~~~~--~~~~~-~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~-------------------~  287 (521)
                      +|..+..++..+.+..+..  ..... +.+.......+.++.+|..+...+..++.....                   .
T Consensus       240 ~~~~~~~~l~~i~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (861)
T d2bpta1         240 VQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFAL  319 (861)
T ss_dssp             HHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence            9999999999998876542  22222 333445566788899999888877765432110                   1


Q ss_pred             HHHHhHHHHHHHhhcC-------CChHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHh
Q 009975          288 ATIEQLLPIFLSLLKD-------EFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS  360 (521)
Q Consensus       288 ~~~~~l~~~l~~~l~d-------~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~  360 (521)
                      ...+.++|.+...+.+       .+..+|..+..++..+....+.+.+ +.+.+.+.....+.+|..|.+++..++.+..
T Consensus       320 ~~l~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~  398 (861)
T d2bpta1         320 SSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHIL-EPVLEFVEQNITADNWRNREAAVMAFGSIMD  398 (861)
T ss_dssp             HHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSS
T ss_pred             HHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHhhcchhhh-hhhcchhhhhhhhHHHHHHHHHHHHHHHHHh
Confidence            1234567777666643       3457899999999999888876544 6677777788899999999999999999887


Q ss_pred             hhChhh---hHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHHHH----Hhh------------------------
Q 009975          361 QLGVGF---FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWA----MQH------------------------  409 (521)
Q Consensus       361 ~~~~~~---~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~----~~~------------------------  409 (521)
                      ..+...   +.+.++|.+...+.|+++.||.+++.+++.++..++....    ...                        
T Consensus       399 ~~~~~~~~~~l~~~l~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~  478 (861)
T d2bpta1         399 GPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDHPKVATNCSWTII  478 (861)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred             hcchhhHHHHHHHHHHHHHHHhcCcchhhhhHHHHHHHHHHHHhchhhhhHHhhhhhhHHHHhccccChHHHHHHHHHHH
Confidence            776543   4466889999999999999999999999998876642100    000                        


Q ss_pred             --------------------hHHHHHhhh--cCcchHHHHHHHHHHHHhhcccChHH-----------------------
Q 009975          410 --------------------ITPQVLEMI--NNPHYLYRMTILRAISLLAPVMGSEI-----------------------  444 (521)
Q Consensus       410 --------------------l~~~l~~~l--~~~~~~~r~~a~~~l~~l~~~~~~~~-----------------------  444 (521)
                                          ++..+....  .+.+..+|..+..+++.++...+...                       
T Consensus       479 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~i~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~  558 (861)
T d2bpta1         479 NLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDE  558 (861)
T ss_dssp             HHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCG
T ss_pred             HHHHHhhhcccchhhHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                                111111111  22345677777777766654333210                       


Q ss_pred             -----------------------------------HhhcHHHHHHhhcC-CCCchHHHHHHHHHHHHHhhhchH--HHHh
Q 009975          445 -----------------------------------TCSRLLPVVINASK-DRVPNIKFNVAKVLQSLIPIVDQS--MVEK  486 (521)
Q Consensus       445 -----------------------------------~~~~il~~l~~~l~-d~~~~VR~~a~~~l~~~~~~~~~~--~~~~  486 (521)
                                                         +.+.+++.++..+. +....+|..++.+++.++..++.+  .+.+
T Consensus       559 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~l~~l~~l~~~~~~~~~~~l~  638 (861)
T d2bpta1         559 NQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLE  638 (861)
T ss_dssp             GGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHH
T ss_pred             hhhhhhHHhHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence                                               11234444444443 445678999999999999887764  4457


Q ss_pred             hHHHHHHHhcCCCCccHHHHHHHHHHHHHHhhc
Q 009975          487 TIRPCLVELTEDPDVDVRFFATQAIQSIDHVMM  519 (521)
Q Consensus       487 ~~~~~l~~l~~D~~~~vr~~a~~al~~l~~~~~  519 (521)
                      .++|.+...++|.++.||..|..+++.+.+.++
T Consensus       639 ~i~p~l~~~l~~~~~~v~~~a~~~l~~i~~~~~  671 (861)
T d2bpta1         639 TFSPYLLKALNQVDSPVSITAVGFIADISNSLE  671 (861)
T ss_dssp             HHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTG
T ss_pred             HHhhHHHHHhCCCCHHHHHHHHHHHHHHHHHhH
Confidence            889999998899999999999999998877654

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=7.4e-21  Score=199.53  Aligned_cols=517  Identities=12%  Similarity=0.105  Sum_probs=352.9

Q ss_pred             hhhhhccccCCCcchhHHhhhhHHhhhhcC-chhHHHHHHHHHHHHHHhhcChh--HHHH---hHHHHHHHhhc--CCCC
Q 009975            2 AEELGVFIPYVGGVEHAHVLLPPLETLCTV-EETCVRDKAVESLCRIGSQMRES--DLVD---WYIPLVKRLAA--GEWF   73 (521)
Q Consensus         2 a~~l~~~~~~~~~~~~~~~l~~~l~~l~~~-~~~~vR~~a~~~l~~i~~~~~~~--~~~~---~l~p~i~~~~~--~~~~   73 (521)
                      |..++.++..-.....|+.+++.|.+.+.+ ++..+|..++.+++.+++..++.  ....   .+++.+.+...  +.+.
T Consensus       116 a~~i~~i~~~~~p~~~wpeli~~L~~~~~s~~~~~~~~~al~~l~~i~e~~~~~~~~~~~~~~~il~~i~~~~~~~~~~~  195 (861)
T d2bpta1         116 AQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSK  195 (861)
T ss_dssp             HHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCH
T ss_pred             HHHHHHHHHHhCCcCchHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcccCCH
Confidence            344455443222112467778887665554 45678999999999999887643  1122   23333333222  3345


Q ss_pred             cchhhhhhhhhhhcCCCChH-----HHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCchh---hHHHHHHHHHHhh
Q 009975           74 TARVSACGLFHIAYPSAPDI-----LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAH---LKTDIMSIFEDLT  145 (521)
Q Consensus        74 ~~r~~~~~~~~~~~~~~~~~-----~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~---~~~~l~~~l~~l~  145 (521)
                      .+|..++..+.......++.     ....+++.+...++++++.+|..+..++..++...+...   ....+.++.....
T Consensus       196 ~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~l~~l~~~~~  275 (861)
T d2bpta1         196 AVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATM  275 (861)
T ss_dssp             HHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHhHhHHhhhhhhHHHHhHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            77777777776665544332     456677888888899999999999999999998776421   2233444555666


Q ss_pred             cCCChhHHHHHHHHHHHHhhhcCh-------------------hhhhhhhHHHHHHhcC-------CCChHHHHHHHHHH
Q 009975          146 QDDQDSVRLLAVEGCAALGKLLEP-------------------QDCVAHILPVIVNFSQ-------DKSWRVRYMVANQL  199 (521)
Q Consensus       146 ~d~~~~vr~~a~~~l~~l~~~~~~-------------------~~~~~~l~~~l~~~~~-------d~~~~vR~~~~~~l  199 (521)
                      .+.++.+|..+++.+..+++....                   ......++|.+.....       +.++..|..+..++
T Consensus       276 ~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l  355 (861)
T d2bpta1         276 KSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACL  355 (861)
T ss_dssp             TCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHH
T ss_pred             cCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence            778889999999998887654211                   0112335555555432       35668999999999


Q ss_pred             HHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHH---HHHHhhhHHHHHhccCCcHHHHHHHHHH
Q 009975          200 YELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE---LAIQHILPCVKELSSDSSQHVRSALASV  276 (521)
Q Consensus       200 ~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~~~~l~~~~~d~~~~vr~~~~~~  276 (521)
                      ..++...+... .+.+.+.+.....+++|..|.++..+++.+....+..   .+.+.+++.+...+.|+++.||..++.+
T Consensus       356 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~l~d~~~~vr~~a~~~  434 (861)
T d2bpta1         356 QLFAQNCGNHI-LEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWC  434 (861)
T ss_dssp             HHHHHHHGGGG-HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHH
T ss_pred             HHHHhhcchhh-hhhhcchhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhcCcchhhhhHHHHH
Confidence            99888777554 3556777788889999999999999999988876654   3456788999999999999999999999


Q ss_pred             HHccccccChHH----HHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchhh---H---hhhHHHHHHHHh--cCCC
Q 009975          277 IMGMAPLLGKDA----TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL---L---SQSLLPAIVELA--EDRH  344 (521)
Q Consensus       277 l~~i~~~~~~~~----~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~---~---~~~~~~~l~~~~--~~~~  344 (521)
                      ++.++..++...    ....+++.+.....+ ++.++..++.++..+........   .   ...++..+....  .+.+
T Consensus       435 l~~l~~~~~~~~~~~~~~~~ll~~l~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  513 (861)
T d2bpta1         435 IGRIADSVAESIDPQQHLPGVVQACLIGLQD-HPKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNE  513 (861)
T ss_dssp             HHHHHHHHGGGSCTTTTHHHHHHHHHHHHTS-CHHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCG
T ss_pred             HHHHHHHhchhhhhHHhhhhhhHHHHhcccc-ChHHHHHHHHHHHHHHHHhhhcccchhhHHHhhHHHHHHHHHhhhhhh
Confidence            999887665432    334556666665544 57888888888877766544211   1   123344444433  3456


Q ss_pred             hHHHHHHHHHhHHHHhhhChhhh--HHHHHHHH----HHHcCCC-----------cHHHHHHHHHHHHHHHHHhCHHH--
Q 009975          345 WRVRLAIIEYIPLLASQLGVGFF--DDKLGALC----MQWLQDK-----------VYSIRDAAANNLKRLAEEFGPEW--  405 (521)
Q Consensus       345 ~~vr~~~~~~l~~l~~~~~~~~~--~~~l~~~l----~~~l~d~-----------~~~vr~~a~~~l~~l~~~~~~~~--  405 (521)
                      +.+|..+..++..+.+..+....  ...+.+.+    ...+...           ...++..+...++.+....+...  
T Consensus       514 ~~~~~~~~~al~~~i~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~  593 (861)
T d2bpta1         514 FNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEP  593 (861)
T ss_dssp             GGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGG
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHHHHHHHhcchhhHHH
Confidence            78999999999999988876532  23333333    3333221           12345556666776666554332  


Q ss_pred             HHhhhHHHHHhhhc-CcchHHHHHHHHHHHHhhcccChHH--HhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchH
Q 009975          406 AMQHITPQVLEMIN-NPHYLYRMTILRAISLLAPVMGSEI--TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS  482 (521)
Q Consensus       406 ~~~~l~~~l~~~l~-~~~~~~r~~a~~~l~~l~~~~~~~~--~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~  482 (521)
                      +.+.+++.+...+. ++++.+|..++.+++.++..+|...  +.+.++|.+...++|..+.||..|+.+++.++...+..
T Consensus       594 ~~~~l~~~l~~~l~~~~~~~v~~~~l~~l~~l~~~~~~~~~~~l~~i~p~l~~~l~~~~~~v~~~a~~~l~~i~~~~~~~  673 (861)
T d2bpta1         594 VADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEED  673 (861)
T ss_dssp             GHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGG
T ss_pred             HHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHhCCCCHHHHHHHHHHHHHHHHHhHHH
Confidence            23556676666654 4567899999999999998877653  56789999999999999999999999999999877653


Q ss_pred             --HHHhhHHHHHHHhcCC--CCccHHHHHHHHHHHHHHhhcc
Q 009975          483 --MVEKTIRPCLVELTED--PDVDVRFFATQAIQSIDHVMMS  520 (521)
Q Consensus       483 --~~~~~~~~~l~~l~~D--~~~~vr~~a~~al~~l~~~~~~  520 (521)
                        .+.+.+++.+.+.+.+  .+.++|..+..+++.+...+++
T Consensus       674 ~~~~~~~i~~~L~~~l~~~~~~~~~k~~~~~~l~~i~~~~~~  715 (861)
T d2bpta1         674 FRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGA  715 (861)
T ss_dssp             GHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGG
T ss_pred             hHhhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence              3446677777765544  4678999999999998876654

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.4e-21  Score=212.82  Aligned_cols=494  Identities=14%  Similarity=0.109  Sum_probs=346.4

Q ss_pred             hhHHhhhhcCchhHHHHHHHHHHHHHHhhcC---hhHHHHhHHHHHHHhhcCCCCcchhhhhhhhhhhcCCCChHHHHHH
Q 009975           22 LPPLETLCTVEETCVRDKAVESLCRIGSQMR---ESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTEL   98 (521)
Q Consensus        22 ~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~---~~~~~~~l~p~i~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~l   98 (521)
                      -.+|++ ++++|+.+|.+|+..|......-.   .+.....+++.+.+..+|.+..+|..|+..++.+..+.++.....+
T Consensus         6 ~~ll~k-~~~~D~d~R~ma~~dl~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~~~~~~~~l   84 (1207)
T d1u6gc_           6 SNLLEK-MTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVETI   84 (1207)
T ss_dssp             HHHHHH-TTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred             HHHHHh-cCCCCHhHHHHHHHHHHHHHhhcccccChHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCcHhhHHHH
Confidence            344555 467899999999987776654321   2233456888888888999999999999999999999998878888


Q ss_pred             HHHHHHhcCCCChHHHHHHHHhHHHHHHhhCch--------hhHHHHHHHHHHhh-cCCChhHHHHHHHHHHHHhhhcCh
Q 009975           99 RSIYTQLCQDDMPMVRRSAASNLGKFAATVEPA--------HLKTDIMSIFEDLT-QDDQDSVRLLAVEGCAALGKLLEP  169 (521)
Q Consensus        99 ~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~--------~~~~~l~~~l~~l~-~d~~~~vr~~a~~~l~~l~~~~~~  169 (521)
                      ++.+...+.+++..+|..+..+|..+...++..        .....+++.+.... +.++..+|..++.++..+...++.
T Consensus        85 ~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~~~g~  164 (1207)
T d1u6gc_          85 VDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGG  164 (1207)
T ss_dssp             HHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCS
T ss_pred             HHHHHHHhcCCchhhhHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhH
Confidence            888888888888999999999999988776532        22344555555444 345678999999999999988775


Q ss_pred             h--hhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCccccchHHHHHH-hcCCChHHHHHHHHHhHHHHHhhhC
Q 009975          170 Q--DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVR-LLRDNEAEVRIAAAGKVTKFCRILN  246 (521)
Q Consensus       170 ~--~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~-~l~d~~~~vr~~a~~~l~~l~~~~~  246 (521)
                      .  .....+++.+...++++++.||..++.+++.++...+.+.. ..+++.+.+ +..+.++.+|..++.+++.++...|
T Consensus       165 ~l~~~~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~~~~-~~~~~~ll~~l~~~~~~~~~~~~~~~l~~l~~~~~  243 (1207)
T d1u6gc_         165 LLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVF-VDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAG  243 (1207)
T ss_dssp             SCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----C-TTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSS
T ss_pred             hhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCCHHHH-HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcc
Confidence            3  23456888888889999999999999999999877766554 345555554 4456677888889999999988776


Q ss_pred             HH--HHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccChHH--HHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhh
Q 009975          247 PE--LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA--TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV  322 (521)
Q Consensus       247 ~~--~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~  322 (521)
                      ..  .+.+.++|.+...+.+.+..+|..+..++..+...++...  ....+++.+...+.....................
T Consensus       244 ~~~~~~l~~i~~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~ii~~~l~~l~~dp~~~~~~~~~~~~~~~~~  323 (1207)
T d1u6gc_         244 HRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDAD  323 (1207)
T ss_dssp             GGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC------------------
T ss_pred             hhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHHHHHHHhcCcchhhhhHHHHHhhhhhh
Confidence            43  2345678888888998889999999999998887776532  2445566665555533221111111111111111


Q ss_pred             hchhhHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChh--hhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHH
Q 009975          323 IGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG--FFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEE  400 (521)
Q Consensus       323 ~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~  400 (521)
                       +.+ ......+.......|.+|++|..+++++..+....+..  .+...+.|.+...+.|.++.||..++.++..+...
T Consensus       324 -~~~-~~~~~~~~~~~~~~d~s~~vR~~a~~~L~~l~~~~~~~l~~~~~~~~~~L~~~l~d~~~~vr~~~~~~l~~l~~~  401 (1207)
T d1u6gc_         324 -GGD-DDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQ  401 (1207)
T ss_dssp             --------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHH
T ss_pred             -ccc-hhhhhHHHHHhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Confidence             111 11233333444457889999999999999998876653  23345788889999999999999999999988765


Q ss_pred             hCHH---------------------HHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChH--HHhhcHHHHHHhhc
Q 009975          401 FGPE---------------------WAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE--ITCSRLLPVVINAS  457 (521)
Q Consensus       401 ~~~~---------------------~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~--~~~~~il~~l~~~l  457 (521)
                      .+..                     .....+++.+...+.+.+..+|..+..++..+....+..  .+...+++.+...+
T Consensus       402 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~l~~~~~~~r~~~~~~l~~l~~~~~~~l~~~l~~~~~~i~~~l  481 (1207)
T d1u6gc_         402 TRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSL  481 (1207)
T ss_dssp             HCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHT
T ss_pred             ccchhhhhhchHHHHhhcchHHHHHHHhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHcchHHHHhhHhhHHHHHHHH
Confidence            4311                     112446677777888999999999999999998766542  34567788888888


Q ss_pred             CCCCc--hHHHHHHHHHHHHHhhhchHH---HHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHHhhc
Q 009975          458 KDRVP--NIKFNVAKVLQSLIPIVDQSM---VEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMM  519 (521)
Q Consensus       458 ~d~~~--~VR~~a~~~l~~~~~~~~~~~---~~~~~~~~l~~l~~D~~~~vr~~a~~al~~l~~~~~  519 (521)
                      .|...  .+|..++..+..+....+.+.   +...+.|.+.....|+.+.++..+..++..+.+.+.
T Consensus       482 ~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~al~~~~~l~~~l~  548 (1207)
T d1u6gc_         482 NDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIR  548 (1207)
T ss_dssp             TCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHC
T ss_pred             hcccchhHHHHHHHHHHHHHHHhccHHHHHHHHHhhhhhHHHHHccccHHHHHHHHHHHHHHHHHhh
Confidence            87644  578899999999887666543   345677778888899999999999999988877654

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.7e-19  Score=189.45  Aligned_cols=517  Identities=14%  Similarity=0.104  Sum_probs=356.1

Q ss_pred             hhhhhccccCCCcchhHHhhhhHHhhhhcCc--hhHHHHHHHHHHHHHHhhcChhHHH---HhHHHHHHHhhcCC--CCc
Q 009975            2 AEELGVFIPYVGGVEHAHVLLPPLETLCTVE--ETCVRDKAVESLCRIGSQMRESDLV---DWYIPLVKRLAAGE--WFT   74 (521)
Q Consensus         2 a~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~--~~~vR~~a~~~l~~i~~~~~~~~~~---~~l~p~i~~~~~~~--~~~   74 (521)
                      |..++.++..--+...|+.+++.+.+.+.++  ...+|.+++.++..+++.+.++...   +.++|.+.+...++  ...
T Consensus       110 a~~i~~i~~~~~p~~~Wpeli~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~il~~i~~~l~~~~~~~~  189 (876)
T d1qgra_         110 SQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNN  189 (876)
T ss_dssp             HHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHH
T ss_pred             HHHHHHHHHHHCCccccHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcCcCccHH
Confidence            3445555443211234677888887765544  4678999999999999988876544   45566665555433  446


Q ss_pred             chhhhhhhhhhhcCCCCh-----HHHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCch---hhHHHHHHHHHHhhc
Q 009975           75 ARVSACGLFHIAYPSAPD-----ILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPA---HLKTDIMSIFEDLTQ  146 (521)
Q Consensus        75 ~r~~~~~~~~~~~~~~~~-----~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~l~~  146 (521)
                      +|..++..+........+     .....+++.+...++++++.+|..+++++..+++..+..   ...+.+.+.+.....
T Consensus       190 v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~  269 (876)
T d1qgra_         190 VKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMK  269 (876)
T ss_dssp             HHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhc
Confidence            777777666555544332     245668888889999999999999999999999876642   233456667777778


Q ss_pred             CCChhHHHHHHHHHHHHhhhcCh-----------------------hhhhhhhHHHHHHhcC-------CCChHHHHHHH
Q 009975          147 DDQDSVRLLAVEGCAALGKLLEP-----------------------QDCVAHILPVIVNFSQ-------DKSWRVRYMVA  196 (521)
Q Consensus       147 d~~~~vr~~a~~~l~~l~~~~~~-----------------------~~~~~~l~~~l~~~~~-------d~~~~vR~~~~  196 (521)
                      ++.+.++..++..+..+++....                       ....+.+.|.+.....       +..+.+|..+.
T Consensus       270 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~  349 (876)
T d1qgra_         270 SDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAG  349 (876)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHhcccccccccchHHHHHH
Confidence            88889999999888887653211                       1122345555555432       35567999999


Q ss_pred             HHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHH---HHHHhhhHHHHHhccCCcHHHHHHH
Q 009975          197 NQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE---LAIQHILPCVKELSSDSSQHVRSAL  273 (521)
Q Consensus       197 ~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~~~~l~~~~~d~~~~vr~~~  273 (521)
                      .++..++...+... .+.+++.+.+.+.+++|..|.++...++.+.......   .+...+++.+...+.|+++.||.++
T Consensus       350 ~~l~~l~~~~~~~~-~~~~~~~i~~~l~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a  428 (876)
T d1qgra_         350 VCLMLLATCCEDDI-VPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTA  428 (876)
T ss_dssp             HHHHHHHHHHGGGG-HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHH
T ss_pred             HHHHHHHHHhhhhh-hhhhHHHHHHhhccchHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhcCCccHHHHHH
Confidence            99999998877654 3668888999999999999999999999887766544   3456688888899999999999999


Q ss_pred             HHHHHccccccChH----HHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhch----------------hhHhhhHH
Q 009975          274 ASVIMGMAPLLGKD----ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI----------------DLLSQSLL  333 (521)
Q Consensus       274 ~~~l~~i~~~~~~~----~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~----------------~~~~~~~~  333 (521)
                      +.+++.++...+..    ...+.+++.+...+.+ ++.++..++.++..+......                ....+.++
T Consensus       429 ~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~  507 (876)
T d1qgra_         429 AWTVGRICELLPEAAINDVYLAPLLQCLIEGLSA-EPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIV  507 (876)
T ss_dssp             HHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTS-CHHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHH
T ss_pred             HHHHHHHHHHcchhhhhHHHhhhHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            99999988766542    3355677777777765 689999999988887654321                11224566


Q ss_pred             HHHHHHhcC---CChHHHHHHHHHhHHHHhhhChhh------hHHHHHHHHHHHcCCC------c-----HHHHHHHHHH
Q 009975          334 PAIVELAED---RHWRVRLAIIEYIPLLASQLGVGF------FDDKLGALCMQWLQDK------V-----YSIRDAAANN  393 (521)
Q Consensus       334 ~~l~~~~~~---~~~~vr~~~~~~l~~l~~~~~~~~------~~~~l~~~l~~~l~d~------~-----~~vr~~a~~~  393 (521)
                      +.+.....+   ....+|..+++.+..+......+.      +...+++.+...+...      .     ...+.....+
T Consensus       508 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~  587 (876)
T d1qgra_         508 QKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCAT  587 (876)
T ss_dssp             HHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhccccHhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhHHHHHHHHHHHHH
Confidence            666666543   346688888888888877765532      1223344444333321      1     1223344445


Q ss_pred             HHHHHHHhCHHHH---HhhhHHHHHhhhcC--cchHHHHHHHHHHHHhhcccChHH--HhhcHHHHHHhhcCCCC-chHH
Q 009975          394 LKRLAEEFGPEWA---MQHITPQVLEMINN--PHYLYRMTILRAISLLAPVMGSEI--TCSRLLPVVINASKDRV-PNIK  465 (521)
Q Consensus       394 l~~l~~~~~~~~~---~~~l~~~l~~~l~~--~~~~~r~~a~~~l~~l~~~~~~~~--~~~~il~~l~~~l~d~~-~~VR  465 (521)
                      +..+....+.+..   .+.+++.+...+..  ++..++..++.+++.++..+|...  +.+.++|.+...+++.. +.+|
T Consensus       588 l~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~l~~ii~~l~~~l~~~~~~~v~  667 (876)
T d1qgra_         588 LQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVC  667 (876)
T ss_dssp             HHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCTTHHHH
T ss_pred             HHHHHHHcchhhhhhhHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHhCCCcHHHH
Confidence            5555555555432   24566666666543  467889999999999998777643  56788999999887764 6799


Q ss_pred             HHHHHHHHHHHhhhchH--HHHhhHHHHHHHhcCCC--CccHHHHHHHHHHHHHHhhcc
Q 009975          466 FNVAKVLQSLIPIVDQS--MVEKTIRPCLVELTEDP--DVDVRFFATQAIQSIDHVMMS  520 (521)
Q Consensus       466 ~~a~~~l~~~~~~~~~~--~~~~~~~~~l~~l~~D~--~~~vr~~a~~al~~l~~~~~~  520 (521)
                      ..++.+++.+....+..  .+...+.+.+.+.++|+  +.++|..+..+++.+...+|.
T Consensus       668 ~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~k~~~~~~i~~i~~~~~~  726 (876)
T d1qgra_         668 LAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGG  726 (876)
T ss_dssp             HHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGG
T ss_pred             HHHHHHHHHHHHHhHHhhhhhHHHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHhH
Confidence            99999999988766543  34466777777665554  578999999999998876653

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=3.8e-19  Score=172.29  Aligned_cols=391  Identities=15%  Similarity=0.149  Sum_probs=281.8

Q ss_pred             HHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcC--CChhHHHHHHHHHHHHhhhcCh------
Q 009975           98 LRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQD--DQDSVRLLAVEGCAALGKLLEP------  169 (521)
Q Consensus        98 l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d--~~~~vr~~a~~~l~~l~~~~~~------  169 (521)
                      +.+++..+. ++|+.+|+.|.+.|..+...-.     +.++..+...+.+  .+..+|..|.-.+.+......+      
T Consensus         2 l~~il~~~~-s~d~~~r~~A~~~L~~~~~~~~-----~~~~~~l~~il~~~~~~~~~R~~A~i~lk~~l~~~~~~~~~~~   75 (458)
T d1ibrb_           2 LITILEKTV-SPDRLELEAAQKFLERAAVENL-----PTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQY   75 (458)
T ss_dssp             HHHHHHHTT-CSCHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHH
T ss_pred             HHHHHHHHh-CcCHHHHHHHHHHHHHHHhcCc-----hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccCchhhhHH
Confidence            455565544 6789999999999999876422     2333444444433  3457999988888766544221      


Q ss_pred             --------hhhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCC--ChHHHHHHHHHhHH
Q 009975          170 --------QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRD--NEAEVRIAAAGKVT  239 (521)
Q Consensus       170 --------~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d--~~~~vr~~a~~~l~  239 (521)
                              +.....+.+.+.....+++..+| .++.++..++....+...++.+++.+.+.+.+  ..+.++..++.+++
T Consensus        76 ~~~~~~l~~~~~~~i~~~ll~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~l~  154 (458)
T d1ibrb_          76 QQRWLAIDANARREVKNYVLQTLGTETYRPS-SASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIG  154 (458)
T ss_dssp             HHHHHTSCHHHHHHHHHHHHHHTTCCCSSSC-SHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHH
T ss_pred             hhhhccCCHHHHHHHHHHHHhccCCCcHHHH-HHHHHHHHHHHHhCCcccCcchhHHHHHHHHhhcchHHHHHHHHHHHH
Confidence                    12345577777777777766544 56777777777655555578899999988765  44678899999999


Q ss_pred             HHHhhhCHH---HHHHhhhHHHHHhcc--CCcHHHHHHHHHHHHccccccCh----HHHHHhHHHHHHHhhcCCChHHHH
Q 009975          240 KFCRILNPE---LAIQHILPCVKELSS--DSSQHVRSALASVIMGMAPLLGK----DATIEQLLPIFLSLLKDEFPDVRL  310 (521)
Q Consensus       240 ~l~~~~~~~---~~~~~~~~~l~~~~~--d~~~~vr~~~~~~l~~i~~~~~~----~~~~~~l~~~l~~~l~d~~~~vr~  310 (521)
                      .+....+..   .....+++.+.+.+.  +.+..+|..++.++..+......    ......+.+.+...+.++++++|.
T Consensus       155 ~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  234 (458)
T d1ibrb_         155 YICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRV  234 (458)
T ss_dssp             HHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHH
T ss_pred             HHHhhccchhhhhhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhHhhHHHHhcCCCHHHHH
Confidence            988876554   223456666666664  45788999999999988865533    233446778888899999999999


Q ss_pred             HHHHHHHHhhhhhchh---hHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhCh-----------------------
Q 009975          311 NIISKLDQVNQVIGID---LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV-----------------------  364 (521)
Q Consensus       311 ~a~~~l~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~-----------------------  364 (521)
                      .++.++..+++..+..   .+.+.+.+.+.....+.+..++..+++.+..+++....                       
T Consensus       235 ~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (458)
T d1ibrb_         235 AALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYA  314 (458)
T ss_dssp             HHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHH
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHHHHHHHH
Confidence            9999999998765532   12233445556667888889999998888877643210                       


Q ss_pred             hhhHHHHHHHHHHHcC-------CCcHHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhh
Q 009975          365 GFFDDKLGALCMQWLQ-------DKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLA  437 (521)
Q Consensus       365 ~~~~~~l~~~l~~~l~-------d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~  437 (521)
                      ....+.+.|.+...+.       |.++.+|.++..++..+...+|.+ ..+.+++.+.+.+++++|++|.+++.+++.++
T Consensus       315 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~-~~~~l~~~i~~~l~s~~~~~r~aal~~l~~i~  393 (458)
T d1ibrb_         315 KGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDD-IVPHVLPFIKEHIKNPDWRYRDAAVMAFGCIL  393 (458)
T ss_dssp             HHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTT-HHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHhhhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhccHh-hhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            1123456666666543       455679999999999999988865 35678899999999999999999999999999


Q ss_pred             cccChH---HHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchHHH-HhhHHHHHHHhc
Q 009975          438 PVMGSE---ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMV-EKTIRPCLVELT  496 (521)
Q Consensus       438 ~~~~~~---~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~-~~~~~~~l~~l~  496 (521)
                      ...+.+   .+.+.++|.++..++|+++.||.+|+++++.++..++.... ..++.|.+..++
T Consensus       394 ~~~~~~~~~~~l~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~~~~~~~~~~~~~l~~ll~~ll  456 (458)
T d1ibrb_         394 EGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLI  456 (458)
T ss_dssp             SSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGGCCSTTTHHHHHHHHH
T ss_pred             HhcCHhHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHh
Confidence            765443   35678999999999999999999999999999988765433 344555555543

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=1.8e-17  Score=173.95  Aligned_cols=446  Identities=14%  Similarity=0.108  Sum_probs=307.9

Q ss_pred             hhhHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHHHhHHHHHHHhh-cCC-CCcchhhhhhhhhhhc-----------
Q 009975           21 LLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLA-AGE-WFTARVSACGLFHIAY-----------   87 (521)
Q Consensus        21 l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~p~i~~~~-~~~-~~~~r~~~~~~~~~~~-----------   87 (521)
                      +.+.|.... ++|..+|+.|.+.|..+.+.-.+     .+++.+.+.. +++ +..+|..|...+....           
T Consensus         3 l~~~L~~~~-s~d~~~r~~Ae~~L~~~~~~~~~-----~f~~~L~~i~~~~~~~~~iR~~A~i~lKn~i~~~~~~~~~~~   76 (876)
T d1qgra_           3 LITILEKTV-SPDRLELEAAQKFLERAAVENLP-----TFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQY   76 (876)
T ss_dssp             HHHHHHGGG-CSCHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHH
T ss_pred             HHHHHHHHh-CcCHHHHHHHHHHHHHHHhcChh-----HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccchhhhh
Confidence            456666665 58999999999999998875332     2333333333 322 3457877766654332           


Q ss_pred             ----CCCChHHHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCC--ChhHHHHHHHHHH
Q 009975           88 ----PSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDD--QDSVRLLAVEGCA  161 (521)
Q Consensus        88 ----~~~~~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~--~~~vr~~a~~~l~  161 (521)
                          ..++++.+..+...+.+++.+++. +|+.++.+++.++..--+...|++++|.+.+.+.++  ...+|..++.++.
T Consensus        77 ~~~~~~i~~~~k~~ik~~ll~~l~~~~~-~~~~~a~~i~~i~~~~~p~~~Wpeli~~L~~~l~~~~~~~~~~~~~l~~l~  155 (876)
T d1qgra_          77 QQRWLAIDANARREVKNYVLHTLGTETY-RPSSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIG  155 (876)
T ss_dssp             HHHHHTSCHHHHHHHHHHHHHHTTTCCS-SSCHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHH
T ss_pred             hcccccCCHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHCCccccHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence                246677788888888888877654 666788999998876444456889999998877654  4578999999999


Q ss_pred             HHhhhcChhh---hhhhhHHHHHHhcC--CCChHHHHHHHHHHHHHHHHhCC----CccccchHHHHHHhcCCChHHHHH
Q 009975          162 ALGKLLEPQD---CVAHILPVIVNFSQ--DKSWRVRYMVANQLYELCEAVGP----EPTRMDLVPAYVRLLRDNEAEVRI  232 (521)
Q Consensus       162 ~l~~~~~~~~---~~~~l~~~l~~~~~--d~~~~vR~~~~~~l~~i~~~~~~----~~~~~~l~~~l~~~l~d~~~~vr~  232 (521)
                      .+++.+.++.   ..+.+++.+...+.  +++..+|..+..++.........    ......+++.+...++++++.+|.
T Consensus       156 ~i~~~~~~~~~~~~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~v~~  235 (876)
T d1qgra_         156 YICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRV  235 (876)
T ss_dssp             HHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHH
T ss_pred             HHHHHCCHHHHHHHHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence            9988776543   33456777776664  45678999999888776543321    122245777788888999999999


Q ss_pred             HHHHhHHHHHhhhCHH---HHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccC-----------------------h
Q 009975          233 AAAGKVTKFCRILNPE---LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLG-----------------------K  286 (521)
Q Consensus       233 ~a~~~l~~l~~~~~~~---~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~-----------------------~  286 (521)
                      .++.++..+.+..+..   ...+.+.+.+.....+.+..++..+...+..++....                       .
T Consensus       236 ~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (876)
T d1qgra_         236 AALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYA  315 (876)
T ss_dssp             HHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHH
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhHHHHHHHHH
Confidence            9999999998876532   1223345555666677788888777766665543110                       1


Q ss_pred             HHHHHhHHHHHHHhhcC-------CChHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHH
Q 009975          287 DATIEQLLPIFLSLLKD-------EFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLA  359 (521)
Q Consensus       287 ~~~~~~l~~~l~~~l~d-------~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~  359 (521)
                      ....+.+.|.+...+.+       .+..+|..+..++..+....+.+.+ +.+++.+.+.+.+++|+.|.+++..++.+.
T Consensus       316 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~-~~~~~~i~~~l~~~~~~~r~~~~~~l~~~~  394 (876)
T d1qgra_         316 KGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCIL  394 (876)
T ss_dssp             HHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGGH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHhhHHHHHhcccccccccchHHHHHHHHHHHHHHHhhhhhh-hhhHHHHHHhhccchHHHHHHHHHHHHhhh
Confidence            12234566666666542       3456899999999999888776544 778899999999999999999999988887


Q ss_pred             hhhChh---hhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHHH----HHhhhHHHHHhhhcCcchHHHHHHHHH
Q 009975          360 SQLGVG---FFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW----AMQHITPQVLEMINNPHYLYRMTILRA  432 (521)
Q Consensus       360 ~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~~~~~~~r~~a~~~  432 (521)
                      ...+..   .+...+++.+...+.|+++.||.+++.+++.+++.++...    +...+++.+...+.+ +++++..++.+
T Consensus       395 ~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~v~~~~~~~  473 (876)
T d1qgra_         395 EGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSA-EPRVASNVCWA  473 (876)
T ss_dssp             SSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTS-CHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHHHHcchhhhhHHHhhhHHHHHHHHhcC-CHHHHHHHHHH
Confidence            766554   3345678888999999999999999999999998775432    234456666665544 67888888888


Q ss_pred             HHHhhcccCh----------------HHHhhcHHHHHHhhcCCC---CchHHHHHHHHHHHH
Q 009975          433 ISLLAPVMGS----------------EITCSRLLPVVINASKDR---VPNIKFNVAKVLQSL  475 (521)
Q Consensus       433 l~~l~~~~~~----------------~~~~~~il~~l~~~l~d~---~~~VR~~a~~~l~~~  475 (521)
                      +..+......                ..+.+.+++.+...+.+.   ...+|..+..++..+
T Consensus       474 l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~~  535 (876)
T d1qgra_         474 FSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEI  535 (876)
T ss_dssp             HHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhccccHhHHHHHHHHHHHh
Confidence            8877652210                112344555555555432   345666666555544

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=5.8e-19  Score=170.94  Aligned_cols=383  Identities=16%  Similarity=0.151  Sum_probs=236.8

Q ss_pred             hhhHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHHHhHHHHHHH-hhcC-CCCcchhhhhhhhhhhcC----------
Q 009975           21 LLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKR-LAAG-EWFTARVSACGLFHIAYP----------   88 (521)
Q Consensus        21 l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~p~i~~-~~~~-~~~~~r~~~~~~~~~~~~----------   88 (521)
                      +.+.|..+. ++|..+|..|.+.|..+.+.-+++     +++.+.+ +.++ ....+|..|..++.....          
T Consensus         2 l~~il~~~~-s~d~~~r~~A~~~L~~~~~~~~~~-----~~~~l~~il~~~~~~~~~R~~A~i~lk~~l~~~~~~~~~~~   75 (458)
T d1ibrb_           2 LITILEKTV-SPDRLELEAAQKFLERAAVENLPT-----FLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQY   75 (458)
T ss_dssp             HHHHHHHTT-CSCHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHH
T ss_pred             HHHHHHHHh-CcCHHHHHHHHHHHHHHHhcCchH-----HHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccCchhhhHH
Confidence            345666666 578999999999999998853322     2333333 3333 244677776655543332          


Q ss_pred             -----CCChHHHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCC--ChhHHHHHHHHHH
Q 009975           89 -----SAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDD--QDSVRLLAVEGCA  161 (521)
Q Consensus        89 -----~~~~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~--~~~vr~~a~~~l~  161 (521)
                           ..++..+..+.+.+.+...++++.+| .++..+..++....+...++.+++.+.+.+.++  +..++..+..+++
T Consensus        76 ~~~~~~l~~~~~~~i~~~ll~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~l~  154 (458)
T d1ibrb_          76 QQRWLAIDANARREVKNYVLQTLGTETYRPS-SASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIG  154 (458)
T ss_dssp             HHHHHTSCHHHHHHHHHHHHHHTTCCCSSSC-SHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHH
T ss_pred             hhhhccCCHHHHHHHHHHHHhccCCCcHHHH-HHHHHHHHHHHHhCCcccCcchhHHHHHHHHhhcchHHHHHHHHHHHH
Confidence                 34555677888888888887766544 567788887776555667788888888877654  4567889999999


Q ss_pred             HHhhhcChhh---hhhhhHHHHHHhcC--CCChHHHHHHHHHHHHHHHHhCC----CccccchHHHHHHhcCCChHHHHH
Q 009975          162 ALGKLLEPQD---CVAHILPVIVNFSQ--DKSWRVRYMVANQLYELCEAVGP----EPTRMDLVPAYVRLLRDNEAEVRI  232 (521)
Q Consensus       162 ~l~~~~~~~~---~~~~l~~~l~~~~~--d~~~~vR~~~~~~l~~i~~~~~~----~~~~~~l~~~l~~~l~d~~~~vr~  232 (521)
                      .+........   ....+++.+...+.  +.+..+|..++.++..+......    ......+.+.+...+.++++++|.
T Consensus       155 ~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  234 (458)
T d1ibrb_         155 YICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRV  234 (458)
T ss_dssp             HHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHH
T ss_pred             HHHhhccchhhhhhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhHhhHHHHhcCCCHHHHH
Confidence            9988776543   33456777776665  46788999999998877643321    222245777888889999999999


Q ss_pred             HHHHhHHHHHhhhCHH---HHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccChH----------------------
Q 009975          233 AAAGKVTKFCRILNPE---LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD----------------------  287 (521)
Q Consensus       233 ~a~~~l~~l~~~~~~~---~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~----------------------  287 (521)
                      .++.++..+++..+..   ...+.+.+.+.....+.+..++..++..+..++......                      
T Consensus       235 ~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (458)
T d1ibrb_         235 AALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYA  314 (458)
T ss_dssp             HHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHH
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHHHHHHHH
Confidence            9999999998866432   111223344555567788888888888877665221100                      


Q ss_pred             -HHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChhh
Q 009975          288 -ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF  366 (521)
Q Consensus       288 -~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~  366 (521)
                       ...+.+.|.+...+.+.+                                ....+.+|.+|..+..++..++...|.+.
T Consensus       315 ~~~~~~l~~~l~~~~~~~~--------------------------------~~~~~~~~~~~~~a~~~l~~l~~~~~~~~  362 (458)
T d1ibrb_         315 KGALQYLVPILTQTLTKQD--------------------------------ENDDDDDWNPCKAAGVCLMLLATCCEDDI  362 (458)
T ss_dssp             HHHHHHHHHHHHHHTTCCC--------------------------------SSCCTTCCSHHHHHHHHHHHHHHHTTTTH
T ss_pred             HHHHHHHhhhHHhhhhcch--------------------------------hhhccccccHHHHHHHHHHHHHHhccHhh
Confidence             011122222222221100                                01134555566666666666666555443


Q ss_pred             hHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCH---HHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChH
Q 009975          367 FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP---EWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE  443 (521)
Q Consensus       367 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~  443 (521)
                       .+.++|.+.+.+++++|.+|.+++.+++.++...+.   ..+...++|.+...++|+++.+|.+|+.+++.+++.++..
T Consensus       363 -~~~l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~~~~~~~  441 (458)
T d1ibrb_         363 -VPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEA  441 (458)
T ss_dssp             -HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGG
T ss_pred             -hhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcc
Confidence             345566666666666666666666666666543321   1244556666666666666666666666666666555443

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=6e-17  Score=159.80  Aligned_cols=488  Identities=14%  Similarity=0.067  Sum_probs=309.2

Q ss_pred             ccCCCcchhHHhhhhHHhhhhcCchhHHHHHHHHHHHHHHhhcChhH-H--HHhHHHHHHHhhc-CCCCcchhhhhhhhh
Q 009975            9 IPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESD-L--VDWYIPLVKRLAA-GEWFTARVSACGLFH   84 (521)
Q Consensus         9 ~~~~~~~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~-~--~~~l~p~i~~~~~-~~~~~~r~~~~~~~~   84 (521)
                      ..|--+.++...-+|.|.++++++|..+|..|+..+..++..-.... +  ...++|.+..+.. .++...+..+...+.
T Consensus         6 ~~~~~~~~~~~~aip~L~~lL~~~~~~v~~~A~~~l~~l~~~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~a~~~L~   85 (529)
T d1jdha_           6 INYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLH   85 (529)
T ss_dssp             C----------CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred             hcCCccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccHHHHHHHHhhhHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            33333334444568889999999999999999999999986532211 1  1346777666654 445566777777776


Q ss_pred             hhcCCCChH----HHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCch---hhHHHHHHHHHHhhcCCChhHHHHHH
Q 009975           85 IAYPSAPDI----LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPA---HLKTDIMSIFEDLTQDDQDSVRLLAV  157 (521)
Q Consensus        85 ~~~~~~~~~----~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~l~~d~~~~vr~~a~  157 (521)
                      .+..+ ++.    .....++.+..+++++++.++..++.+|+.++...+..   ......+|.+..++++++..++..++
T Consensus        86 ~l~~~-~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~  164 (529)
T d1jdha_          86 NLSHH-REGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITT  164 (529)
T ss_dssp             HHTTS-HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHH
T ss_pred             HHhCC-chhHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHccChHHHHHHH
Confidence            66632 222    22335788889999999999999999999998764432   23455788888899999999999999


Q ss_pred             HHHHHHhhhcChh---hhhhhhHHHHHHhc-CCCChHHHHHHHHHHHHHHHHhC--CCccccchHHHHHHhcCCChHHHH
Q 009975          158 EGCAALGKLLEPQ---DCVAHILPVIVNFS-QDKSWRVRYMVANQLYELCEAVG--PEPTRMDLVPAYVRLLRDNEAEVR  231 (521)
Q Consensus       158 ~~l~~l~~~~~~~---~~~~~l~~~l~~~~-~d~~~~vR~~~~~~l~~i~~~~~--~~~~~~~l~~~l~~~l~d~~~~vr  231 (521)
                      .++..++..-...   ......++.+..++ ..+...++..++..+..++..-.  ........++.+..++.+++..++
T Consensus       165 ~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~  244 (529)
T d1jdha_         165 DCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLV  244 (529)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHH
T ss_pred             HHHHHHhhhhhHHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhccccccchhhhhhhhhhHHHHhcccchhhh
Confidence            9999997542211   12223455555555 45567788888888877652111  011234578889999999999999


Q ss_pred             HHHHHhHHHHHhhhCHHHHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccCh--HH-HHHhHHHHHHHhh--cCCCh
Q 009975          232 IAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK--DA-TIEQLLPIFLSLL--KDEFP  306 (521)
Q Consensus       232 ~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~--~~-~~~~l~~~l~~~l--~d~~~  306 (521)
                      ..++.++..+.............++.+.+++.+.+..++..++.+++.++..-..  .. .....++.+...+  ..+.+
T Consensus       245 ~~a~~~l~~ls~~~~~~~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Li~~l~~~~~~~  324 (529)
T d1jdha_         245 QNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDRE  324 (529)
T ss_dssp             HHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCH
T ss_pred             hhhhhHHHhccccccchhhhhhcchhhhhhcccccHHHHHHHHHHHHhhccchhHHHHHHHHhhhHHHHHHHHHhhhcch
Confidence            9999999887654432222245678888889999999999999999988743221  11 1234566666655  34567


Q ss_pred             HHHHHHHHHHHHhhhhhchh------hHhhhHHHHHHHHhcC-CChHHHHHHHHHhHHHHhhhChh--hhHHHHHHHHHH
Q 009975          307 DVRLNIISKLDQVNQVIGID------LLSQSLLPAIVELAED-RHWRVRLAIIEYIPLLASQLGVG--FFDDKLGALCMQ  377 (521)
Q Consensus       307 ~vr~~a~~~l~~~~~~~~~~------~~~~~~~~~l~~~~~~-~~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~  377 (521)
                      +++..++.++..+.......      ......++.+..++.+ .++.++..++..+..++..-...  ......+|.+..
T Consensus       325 ~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~~~~~~~~~l~~l~~~~~~~~~l~~~g~i~~L~~  404 (529)
T d1jdha_         325 DITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQ  404 (529)
T ss_dssp             HHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHH
T ss_pred             hHHHHHHHHhhcccchhhcchhhhhhHHhcccchhHHHHHhccchHHHHHHHHHHHhhcchhhhhhhhhhhcccHHHHHH
Confidence            88989999988876432211      1123446777776654 45677777777777665432211  112335666777


Q ss_pred             HcCCCcHHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChHH--HhhcHHHHHHh
Q 009975          378 WLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI--TCSRLLPVVIN  455 (521)
Q Consensus       378 ~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~--~~~~il~~l~~  455 (521)
                      ++.+.+.+++..+..........-+                 -....++..++.++..++.......  -....++.+.+
T Consensus       405 lL~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~al~~la~~~~~r~~~~~~~~i~~Lv~  467 (529)
T d1jdha_         405 LLVRAHQDTQRRTSMGGTQQQFVEG-----------------VRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQ  467 (529)
T ss_dssp             HHHHHHHHHC-----------CBTT-----------------BCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHH
T ss_pred             HHhcCCHHHHHHHHhhhhhHHhhcc-----------------cchHHHHHHHHHHHHHHccCHHHHHHHHHCCCHHHHHH
Confidence            7766666655544322111110000                 0112333444455555543211111  12346788999


Q ss_pred             hcCCCCchHHHHHHHHHHHHHhhhchH--HHHhhHHHHHHHhcCCCCccHHHHHHHHHHHH
Q 009975          456 ASKDRVPNIKFNVAKVLQSLIPIVDQS--MVEKTIRPCLVELTEDPDVDVRFFATQAIQSI  514 (521)
Q Consensus       456 ~l~d~~~~VR~~a~~~l~~~~~~~~~~--~~~~~~~~~l~~l~~D~~~~vr~~a~~al~~l  514 (521)
                      ++.++++.+|..++.+|..+...-...  ......++.|.++.+++++.||..|..++..|
T Consensus       468 lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~~~~L~~Ll~s~n~~v~~~a~~aL~~l  528 (529)
T d1jdha_         468 LLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM  528 (529)
T ss_dssp             GGGCSCHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred             HhCCCCHHHHHHHHHHHHHHhcChhhHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence            999999999999999999987542211  12344678889999999999999999999876

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.79  E-value=1.8e-16  Score=152.15  Aligned_cols=371  Identities=12%  Similarity=0.105  Sum_probs=253.4

Q ss_pred             HhhcCCChhHHHHHHHHHHHHhhhcCh---h-hhhhhhHHHHHHhcCC-CChHHHHHHHHHHHHHHHHhC---CCccccc
Q 009975          143 DLTQDDQDSVRLLAVEGCAALGKLLEP---Q-DCVAHILPVIVNFSQD-KSWRVRYMVANQLYELCEAVG---PEPTRMD  214 (521)
Q Consensus       143 ~l~~d~~~~vr~~a~~~l~~l~~~~~~---~-~~~~~l~~~l~~~~~d-~~~~vR~~~~~~l~~i~~~~~---~~~~~~~  214 (521)
                      +.+.++++..+..|+..+..+.+.-..   + .....++|.+.+++++ +++.+|..++.+|..++..-.   .......
T Consensus        20 ~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~   99 (434)
T d1q1sc_          20 KGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGG   99 (434)
T ss_dssp             HHHTSSCHHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHHHHHHHHHTT
T ss_pred             HHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCChhhhhHhhhcc
Confidence            344555666666666666655433221   1 1223466666666643 456677777777777653111   1112356


Q ss_pred             hHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCH--H-HHHHhhhHHHHHhccCCc-----HHHHHHHHHHHHcccccc--
Q 009975          215 LVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP--E-LAIQHILPCVKELSSDSS-----QHVRSALASVIMGMAPLL--  284 (521)
Q Consensus       215 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~--~-~~~~~~~~~l~~~~~d~~-----~~vr~~~~~~l~~i~~~~--  284 (521)
                      .+|.+.+++++++.+++..|+.+|..++..-+.  . ......++.+..++...+     ......++..+..+....  
T Consensus       100 ~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  179 (434)
T d1q1sc_         100 AIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNP  179 (434)
T ss_dssp             HHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHTCCCTT
T ss_pred             chhhhhhccccCCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHHHHHhhcccc
Confidence            788888888888888888888888887753221  1 122335556666554332     223334455566655432  


Q ss_pred             -ChHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchh---hHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHh
Q 009975          285 -GKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID---LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS  360 (521)
Q Consensus       285 -~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~  360 (521)
                       ........++|.+..++.+.+++++..++.++..+...-...   .....++|.+.++++++++.++..++..+..++.
T Consensus       180 ~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~al~~l~~l~~  259 (434)
T d1q1sc_         180 APPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVT  259 (434)
T ss_dssp             CCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTT
T ss_pred             cchhhhhhhHHHHHHHHHhccccchhhhHHhhhcccchhhhhhHHHHhhcccchhcccccccchhhhhhchhhhhhhHHh
Confidence             223345678999999999999999999999999887542211   1234678999999999999999999999888765


Q ss_pred             hhCh---hhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhC---HHHHHhhhHHHHHhhhcCcchHHHHHHHHHHH
Q 009975          361 QLGV---GFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFG---PEWAMQHITPQVLEMINNPHYLYRMTILRAIS  434 (521)
Q Consensus       361 ~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~  434 (521)
                      .-..   ..+...+++.+..++++++.++|..++.++..++....   .......++|.+...+.++++.+|..++.+++
T Consensus       260 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~~~~v~~~a~~~l~  339 (434)
T d1q1sc_         260 GTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAIT  339 (434)
T ss_dssp             SCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHSSCHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHhccccchHHHhhcccchhhhHHHHHHHhhhccccchhHHHHhhhhhHHHHHHHHhccChHHHHHHHHHHH
Confidence            3211   12223456678889999999999999999998874321   11234568899999999999999999999999


Q ss_pred             HhhcccChHH----HhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhc----hHHHH-----hhHHHHHHHhcCCCCc
Q 009975          435 LLAPVMGSEI----TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD----QSMVE-----KTIRPCLVELTEDPDV  501 (521)
Q Consensus       435 ~l~~~~~~~~----~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~----~~~~~-----~~~~~~l~~l~~D~~~  501 (521)
                      .+....+.+.    ....+++.+..+++++++.++..+++++..+.....    .+.+.     ....+.+..+.+++++
T Consensus       340 nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~d~~~~~~~l~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~n~  419 (434)
T d1q1sc_         340 NYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENE  419 (434)
T ss_dssp             HHHHHSCHHHHHHHHHTTCHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTSHHHHHHHHTCSSH
T ss_pred             HHHhcCCHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHcCCHHHHHHHHcCCCH
Confidence            9998766543    234578999999999999999999999998876432    12221     2346678888899999


Q ss_pred             cHHHHHHHHHHH
Q 009975          502 DVRFFATQAIQS  513 (521)
Q Consensus       502 ~vr~~a~~al~~  513 (521)
                      +|+..|.+.+++
T Consensus       420 ~i~~~a~~il~~  431 (434)
T d1q1sc_         420 SVYKASLNLIEK  431 (434)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999998887754

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.75  E-value=9.5e-16  Score=147.07  Aligned_cols=373  Identities=10%  Similarity=0.083  Sum_probs=268.7

Q ss_pred             HHhcCCCChHHHHHHHHhHHHHHHhhCch----hhHHHHHHHHHHhhcC-CChhHHHHHHHHHHHHhhhcChh---hhhh
Q 009975          103 TQLCQDDMPMVRRSAASNLGKFAATVEPA----HLKTDIMSIFEDLTQD-DQDSVRLLAVEGCAALGKLLEPQ---DCVA  174 (521)
Q Consensus       103 ~~l~~~~~~~vr~~a~~~l~~l~~~~~~~----~~~~~l~~~l~~l~~d-~~~~vr~~a~~~l~~l~~~~~~~---~~~~  174 (521)
                      .+.+.+++++.+..|+.++..+.......    .....++|.+.+++++ +++.+|..++.+|..++..-+..   ....
T Consensus        19 v~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~   98 (434)
T d1q1sc_          19 VKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDG   98 (434)
T ss_dssp             HHHHTSSCHHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCChhhhhHhhhc
Confidence            44667779999999999999887543332    2334578888888764 45689999999999998653321   1234


Q ss_pred             hhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhC---CCccccchHHHHHHhcCCChH-----HHHHHHHHhHHHHHhhhC
Q 009975          175 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVG---PEPTRMDLVPAYVRLLRDNEA-----EVRIAAAGKVTKFCRILN  246 (521)
Q Consensus       175 ~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~---~~~~~~~l~~~l~~~l~d~~~-----~vr~~a~~~l~~l~~~~~  246 (521)
                      .++|.+..++.+++..+|..++.+++.++..-.   ........++.+..++...+.     .....+..++..+.....
T Consensus        99 ~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~  178 (434)
T d1q1sc_          99 GAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKN  178 (434)
T ss_dssp             THHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHTCCCT
T ss_pred             cchhhhhhccccCCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHHHHHhhccc
Confidence            578999999999999999999999998873211   111234566777777654321     222334445555544322


Q ss_pred             ---HHHHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccChHH---HHHhHHHHHHHhhcCCChHHHHHHHHHHHHhh
Q 009975          247 ---PELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA---TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVN  320 (521)
Q Consensus       247 ---~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~---~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~  320 (521)
                         .......++|.+..++.+.++.++..++.++..++...+...   ....++|.+..++++++++++..++.++..++
T Consensus       179 ~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~al~~l~~l~  258 (434)
T d1q1sc_         179 PAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIV  258 (434)
T ss_dssp             TCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHT
T ss_pred             ccchhhhhhhHHHHHHHHHhccccchhhhHHhhhcccchhhhhhHHHHhhcccchhcccccccchhhhhhchhhhhhhHH
Confidence               123456688999999999999999999999999876543221   12357899999999999999999999999887


Q ss_pred             hhhc---hhhHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChh---hhHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q 009975          321 QVIG---IDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG---FFDDKLGALCMQWLQDKVYSIRDAAANNL  394 (521)
Q Consensus       321 ~~~~---~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l  394 (521)
                      ..-.   ...+...+++.+..++.+++..+|..++..+..++......   .....++|.+...+.++++.+|..++.++
T Consensus       259 ~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~~~~v~~~a~~~l  338 (434)
T d1q1sc_         259 TGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAI  338 (434)
T ss_dssp             TSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHhccccchHHHhhcccchhhhHHHHHHHhhhccccchhHHHHhhhhhHHHHHHHHhccChHHHHHHHHHH
Confidence            5322   12233566778888999999999999999998887543221   22334788899999999999999999999


Q ss_pred             HHHHHHhCHHH----HHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcc---cC-hHHHh-----hcHHHHHHhhcCCCC
Q 009975          395 KRLAEEFGPEW----AMQHITPQVLEMINNPHYLYRMTILRAISLLAPV---MG-SEITC-----SRLLPVVINASKDRV  461 (521)
Q Consensus       395 ~~l~~~~~~~~----~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~---~~-~~~~~-----~~il~~l~~~l~d~~  461 (521)
                      +.+......+.    ....+++.|.+++.++++.++..++.++..+.+.   .+ ...+.     ..+++.+..+..+++
T Consensus       339 ~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~d~~~~~~~l~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~n  418 (434)
T d1q1sc_         339 TNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHEN  418 (434)
T ss_dssp             HHHHHHSCHHHHHHHHHTTCHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTSHHHHHHHHTCSS
T ss_pred             HHHHhcCCHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHcCCHHHHHHHHcCCC
Confidence            99987665442    2355789999999999999999999999988753   22 22221     235667777888999


Q ss_pred             chHHHHHHHHHHHH
Q 009975          462 PNIKFNVAKVLQSL  475 (521)
Q Consensus       462 ~~VR~~a~~~l~~~  475 (521)
                      +.||..|.+.+...
T Consensus       419 ~~i~~~a~~il~~~  432 (434)
T d1q1sc_         419 ESVYKASLNLIEKY  432 (434)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999998888653

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=6.9e-15  Score=144.83  Aligned_cols=421  Identities=12%  Similarity=0.054  Sum_probs=285.9

Q ss_pred             HHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCchh---hHHHHHHHHHHhhcC-CChhHHHHHHHHHHHHhhhcCh-
Q 009975           95 KTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAH---LKTDIMSIFEDLTQD-DQDSVRLLAVEGCAALGKLLEP-  169 (521)
Q Consensus        95 ~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~---~~~~l~~~l~~l~~d-~~~~vr~~a~~~l~~l~~~~~~-  169 (521)
                      ....+|.+.+++.+++..+|..|+..++.++.......   ....+++.+.+++.+ ++..++..+..+|..++..-.. 
T Consensus        15 ~~~aip~L~~lL~~~~~~v~~~A~~~l~~l~~~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~   94 (529)
T d1jdha_          15 ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGL   94 (529)
T ss_dssp             --CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHH
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccHHHHHHHHhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhH
Confidence            34457888999999999999999999999985432211   124567777777754 5678999999999998754211 


Q ss_pred             -hhhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCC---ccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhh
Q 009975          170 -QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE---PTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRIL  245 (521)
Q Consensus       170 -~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~  245 (521)
                       .......+|.+..++.++++.++..++.+|..++...+..   ......+|.+..++++++..++..++.++..++..-
T Consensus        95 ~~i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~  174 (529)
T d1jdha_          95 LAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN  174 (529)
T ss_dssp             HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHccChHHHHHHHHHHHHHhhhh
Confidence             1223446899999999999999999999999998654321   223567899999999999999999999999887542


Q ss_pred             CHH---HHHHhhhHHHHHhc-cCCcHHHHHHHHHHHHccccccCh--HHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHh
Q 009975          246 NPE---LAIQHILPCVKELS-SDSSQHVRSALASVIMGMAPLLGK--DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQV  319 (521)
Q Consensus       246 ~~~---~~~~~~~~~l~~~~-~d~~~~vr~~~~~~l~~i~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~  319 (521)
                      ...   ......++.+..++ ......++..++..+..++..-..  .......++.+..++.+++.+++..++.++..+
T Consensus       175 ~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~~l  254 (529)
T d1jdha_         175 QESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL  254 (529)
T ss_dssp             HHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhccccccchhhhhhhhhhHHHHhcccchhhhhhhhhHHHhc
Confidence            111   11222455555555 445677888888888887643222  222345788999999999999999999999887


Q ss_pred             hhhhchhhHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChh---hhHHHHHHHHHHHc--CCCcHHHHHHHHHHH
Q 009975          320 NQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG---FFDDKLGALCMQWL--QDKVYSIRDAAANNL  394 (521)
Q Consensus       320 ~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l--~d~~~~vr~~a~~~l  394 (521)
                      .............++.+.+++++.+..++..++.++..++..-...   ......++.+...+  ..+.+.++..++.++
T Consensus       255 s~~~~~~~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Li~~l~~~~~~~~~~~~a~~aL  334 (529)
T d1jdha_         255 SDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL  334 (529)
T ss_dssp             HTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cccccchhhhhhcchhhhhhcccccHHHHHHHHHHHHhhccchhHHHHHHHHhhhHHHHHHHHHhhhcchhHHHHHHHHh
Confidence            6543322223567899999999999999999998888776432111   11123455555544  345678888899888


Q ss_pred             HHHHHHhCH------HHHHhhhHHHHHhhhcC-cchHHHHHHHHHHHHhhcccCh--HHHhhcHHHHHHhhcCCCCc---
Q 009975          395 KRLAEEFGP------EWAMQHITPQVLEMINN-PHYLYRMTILRAISLLAPVMGS--EITCSRLLPVVINASKDRVP---  462 (521)
Q Consensus       395 ~~l~~~~~~------~~~~~~l~~~l~~~l~~-~~~~~r~~a~~~l~~l~~~~~~--~~~~~~il~~l~~~l~d~~~---  462 (521)
                      ..+......      .......++.+...+.+ .++.++..++.++..++..-..  .......++.++.++.+...   
T Consensus       335 ~~l~~~~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~~~~~~~~~l~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~  414 (529)
T d1jdha_         335 RHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQ  414 (529)
T ss_dssp             HHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHC
T ss_pred             hcccchhhcchhhhhhHHhcccchhHHHHHhccchHHHHHHHHHHHhhcchhhhhhhhhhhcccHHHHHHHHhcCCHHHH
Confidence            887633221      11234457778887765 4577888899999888753221  11224466666666654333   


Q ss_pred             -------------------hHHHHHHHHHHHHHhhhchHHH--HhhHHHHHHHhcCCCCccHHHHHHHHHHHHH
Q 009975          463 -------------------NIKFNVAKVLQSLIPIVDQSMV--EKTIRPCLVELTEDPDVDVRFFATQAIQSID  515 (521)
Q Consensus       463 -------------------~VR~~a~~~l~~~~~~~~~~~~--~~~~~~~l~~l~~D~~~~vr~~a~~al~~l~  515 (521)
                                         .++..++.+++.+.........  ....++.|.+++.++++++|..|+.++..+.
T Consensus       415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~la~~~~~r~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~  488 (529)
T d1jdha_         415 RRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELA  488 (529)
T ss_dssp             -----------CBTTBCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHT
T ss_pred             HHHHhhhhhHHhhcccchHHHHHHHHHHHHHHccCHHHHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHHh
Confidence                               3445555566555543222111  2345678888888889999999999987763

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.71  E-value=8.4e-15  Score=143.20  Aligned_cols=375  Identities=10%  Similarity=0.069  Sum_probs=271.7

Q ss_pred             HHHHHHhhcCCChhHHHHHHHHHHHHhhhcCh----hhhhhhhHHHHHHhcC-CCChHHHHHHHHHHHHHHHHhC---CC
Q 009975          138 MSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP----QDCVAHILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVG---PE  209 (521)
Q Consensus       138 ~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~~~~-d~~~~vR~~~~~~l~~i~~~~~---~~  209 (521)
                      ++.+.+.+.+++...+..++..+..+...-..    ......++|.+..+++ +.++.++..++.++..++..-.   ..
T Consensus        78 l~~~~~~~~s~~~~~~~~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~~~~  157 (503)
T d1wa5b_          78 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKV  157 (503)
T ss_dssp             HHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCCchHHHHHHCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            34444555677777777777777776543111    1233457788888776 5677899999998888763211   11


Q ss_pred             ccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCH--HH-HHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccC-
Q 009975          210 PTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP--EL-AIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLG-  285 (521)
Q Consensus       210 ~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~--~~-~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~-  285 (521)
                      .....++|.+..++.+++.+++..|+.+|+.++.....  .. ....+++.+..++.+.+..++..+++++..++.... 
T Consensus       158 ~~~~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~~~  237 (503)
T d1wa5b_         158 VVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKP  237 (503)
T ss_dssp             HHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSS
T ss_pred             HHhCCChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhhcccCCHHHHHHHHHHHHHHhcCCcc
Confidence            22356889999999988899999999999998764321  12 223467888889999999999999999999875432 


Q ss_pred             --hHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhch---hhHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHh
Q 009975          286 --KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS  360 (521)
Q Consensus       286 --~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~  360 (521)
                        .......++|.+..++.+.+++++..++.++..++..-..   ..+...+++.+..++.++++.++..++.+++.++.
T Consensus       238 ~~~~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~  317 (503)
T d1wa5b_         238 QPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVT  317 (503)
T ss_dssp             CCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTT
T ss_pred             chHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccCCchhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHHHHHH
Confidence              2234567899999999999999999999999988753221   12335678889999999999999999999998875


Q ss_pred             hhChh---hhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhC---HHHHHhhhHHHHHhhhcCcchHHHHHHHHHHH
Q 009975          361 QLGVG---FFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFG---PEWAMQHITPQVLEMINNPHYLYRMTILRAIS  434 (521)
Q Consensus       361 ~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~  434 (521)
                      ..+..   .....+++.+..+++++++.+|..++.+++.++....   .......++|.+...+.+.++.++..++++++
T Consensus       318 ~~~~~~~~~~~~~~l~~l~~ll~~~~~~i~~~~~~~l~nl~~~~~~~~~~i~~~~~l~~li~~l~~~~~~v~~~a~~~l~  397 (503)
T d1wa5b_         318 GNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAIS  397 (503)
T ss_dssp             SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhhccHHHHHHHHHccccchhHHhcccCChhHHHHHHHHHH
Confidence            43221   1223478889999999999999999999998864211   11234678899999999999999999999999


Q ss_pred             HhhcccCh--HH----HhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhch---------HH----H-HhhHHHHHHH
Q 009975          435 LLAPVMGS--EI----TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ---------SM----V-EKTIRPCLVE  494 (521)
Q Consensus       435 ~l~~~~~~--~~----~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~---------~~----~-~~~~~~~l~~  494 (521)
                      .++.....  +.    ....+++.+..++...++.+...++.++..+......         ..    + ....+..+..
T Consensus       398 nl~~~~~~~~~~~~~l~~~~~l~~l~~~L~~~d~~~~~~~L~~l~~ll~~~~~~~~~~~~~~~~~~~~iee~g~~~~i~~  477 (503)
T d1wa5b_         398 NASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFN  477 (503)
T ss_dssp             HHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHG
T ss_pred             HHHhcccccHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHCCCHHHHHH
Confidence            99864332  11    2356788999999999999999999999887643211         11    1 1234566777


Q ss_pred             hcCCCCccHHHHHHHHHH
Q 009975          495 LTEDPDVDVRFFATQAIQ  512 (521)
Q Consensus       495 l~~D~~~~vr~~a~~al~  512 (521)
                      +..+++.+|+..|.+-++
T Consensus       478 Lq~~~~~~i~~~A~~il~  495 (503)
T d1wa5b_         478 CQQNENDKIYEKAYKIIE  495 (503)
T ss_dssp             GGGCSCHHHHHHHHHHHH
T ss_pred             HHcCCCHHHHHHHHHHHH
Confidence            888899999877776554

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=99.70  E-value=2.2e-15  Score=134.87  Aligned_cols=253  Identities=19%  Similarity=0.134  Sum_probs=175.9

Q ss_pred             hHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccChHHHHHhHH
Q 009975          215 LVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL  294 (521)
Q Consensus       215 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~  294 (521)
                      ..+.+.++++|+++.||..|+.+|+.+..        +..+|.+.++++|+++.||..++.+++.+....+...   ...
T Consensus        20 ~~~~L~~~L~d~~~~vR~~A~~~L~~~~~--------~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~~~---~~~   88 (276)
T d1oyza_          20 NDDELFRLLDDHNSLKRISSARVLQLRGG--------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCED---NVF   88 (276)
T ss_dssp             CHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHH---HHH
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHhhCC--------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhcccccccc---chH
Confidence            34567788888888888888888877643        2356777888888888888888888887764433321   222


Q ss_pred             H-HHHHhhcCCChHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChhhhHHHHHH
Q 009975          295 P-IFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGA  373 (521)
Q Consensus       295 ~-~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~  373 (521)
                      + .+..+++|+++.||..++.+++.+...-..  ....+++.+.....|+++.+|..++..++.+..        ....+
T Consensus        89 ~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~~--~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~~~~--------~~~~~  158 (276)
T d1oyza_          89 NILNNMALNDKSACVRATAIESTAQRCKKNPI--YSPKIVEQSQITAFDKSTNVRRATAFAISVIND--------KATIP  158 (276)
T ss_dssp             HHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGG--GHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-----------CCHH
T ss_pred             HHHHHHHhcCCChhHHHHHHHHHHHHccccch--hhHHHHHHHHHHhcCcchHHHHHHHHHHhhcch--------HHHHH
Confidence            2 334456788888999888888887654321  125677788888888888888888776654432        22345


Q ss_pred             HHHHHcCCCcHHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChHHHhhcHHHHH
Q 009975          374 LCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVV  453 (521)
Q Consensus       374 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~il~~l  453 (521)
                      .+..++.+.++.+|..+...++.+..  +    .....+.+...+.++++.+|..+..+++.+..        +..+|.+
T Consensus       159 ~l~~l~~~~~~~~~~~~~~~~~~~~~--~----~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~--------~~~~~~L  224 (276)
T d1oyza_         159 LLINLLKDPNGDVRNWAAFAININKY--D----NSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKD--------KRVLSVL  224 (276)
T ss_dssp             HHHHHHTCSSHHHHHHHHHHHHHHTC--C----CHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTC--------GGGHHHH
T ss_pred             HHHHhcccccchhhhhHHHHHHhhhc--c----ccccchhhhhhhhhhhhhhhhhhccccchhhh--------hhhHHHH
Confidence            66777888888888887766654432  1    12345566677888899999988888877642        3456777


Q ss_pred             HhhcCCCCchHHHHHHHHHHHHHhhhchHHHHhhHHHHHHHhc-CCCCccHHHHHHHHHH
Q 009975          454 INASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELT-EDPDVDVRFFATQAIQ  512 (521)
Q Consensus       454 ~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~~~~~~~~l~~l~-~D~~~~vr~~a~~al~  512 (521)
                      +..+.|+  .||..++.+|+.+..        +..+|.|.+++ +++|.+||..|.++|+
T Consensus       225 ~~~l~d~--~vr~~a~~aL~~ig~--------~~~~~~L~~~l~~~~d~~vr~~A~~~L~  274 (276)
T d1oyza_         225 CDELKKN--TVYDDIIEAAGELGD--------KTLLPVLDTMLYKFDDNEIITSAIDKLK  274 (276)
T ss_dssp             HHHHTSS--SCCHHHHHHHHHHCC--------GGGHHHHHHHHTTSSCCHHHHHHHHHHT
T ss_pred             HHHhCCh--HHHHHHHHHHHHcCC--------HHHHHHHHHHHccCCCHHHHHHHHHHHc
Confidence            7777764  589999999987753        34667777644 4568899998888874

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=99.69  E-value=2.3e-15  Score=134.78  Aligned_cols=255  Identities=16%  Similarity=0.055  Sum_probs=191.1

Q ss_pred             hhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHh
Q 009975          174 AHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQH  253 (521)
Q Consensus       174 ~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~  253 (521)
                      +.-.+.+.++++|+++.||..++..|+.+.        .+..+|.+.++++|+++.||..|+.+|+.+........   .
T Consensus        18 ~~~~~~L~~~L~d~~~~vR~~A~~~L~~~~--------~~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~~~---~   86 (276)
T d1oyza_          18 KLNDDELFRLLDDHNSLKRISSARVLQLRG--------GQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCED---N   86 (276)
T ss_dssp             TSCHHHHHHHTTCSSHHHHHHHHHHHHHHC--------CHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHH---H
T ss_pred             cCCHHHHHHHhcCCCHHHHHHHHHHHHhhC--------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhcccccccc---c
Confidence            344556778999999999999999998763        24678999999999999999999999988765433222   1


Q ss_pred             hhH-HHHHhccCCcHHHHHHHHHHHHccccccChHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchhhHhhhH
Q 009975          254 ILP-CVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSL  332 (521)
Q Consensus       254 ~~~-~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~  332 (521)
                      ..+ .+..+++|+++.||..++.+++.+...-.  .....+++.+...+.|.++.||..++.+++.+..        ...
T Consensus        87 ~~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~--~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~~~~--------~~~  156 (276)
T d1oyza_          87 VFNILNNMALNDKSACVRATAIESTAQRCKKNP--IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND--------KAT  156 (276)
T ss_dssp             HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG--GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-----------CC
T ss_pred             hHHHHHHHHhcCCChhHHHHHHHHHHHHccccc--hhhHHHHHHHHHHhcCcchHHHHHHHHHHhhcch--------HHH
Confidence            222 33445689999999999999988764322  2245678889999999999999999888877654        455


Q ss_pred             HHHHHHHhcCCChHHHHHHHHHhHHHHhhhChhhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHHHHHhhhHH
Q 009975          333 LPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITP  412 (521)
Q Consensus       333 ~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~  412 (521)
                      ++.+..+..+.++.++..+...+......      .....+.+...+.|.+..+|..+..+++.+    |    ....+|
T Consensus       157 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~al~~~----~----~~~~~~  222 (276)
T d1oyza_         157 IPLLINLLKDPNGDVRNWAAFAININKYD------NSDIRDCFVEMLQDKNEEVRIEAIIGLSYR----K----DKRVLS  222 (276)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHHTCC------CHHHHHHHHHHTTCSCHHHHHHHHHHHHHT----T----CGGGHH
T ss_pred             HHHHHHhcccccchhhhhHHHHHHhhhcc------ccccchhhhhhhhhhhhhhhhhhccccchh----h----hhhhHH
Confidence            77888888899999988877665543322      234566677888999999999998887654    2    245677


Q ss_pred             HHHhhhcCcchHHHHHHHHHHHHhhcccChHHHhhcHHHHHHhhcCC-CCchHHHHHHHHHH
Q 009975          413 QVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKD-RVPNIKFNVAKVLQ  473 (521)
Q Consensus       413 ~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d-~~~~VR~~a~~~l~  473 (521)
                      .+.+.+.|++  +|..++.+++.+..        +..+|.+...+.+ .+..||..|+++|+
T Consensus       223 ~L~~~l~d~~--vr~~a~~aL~~ig~--------~~~~~~L~~~l~~~~d~~vr~~A~~~L~  274 (276)
T d1oyza_         223 VLCDELKKNT--VYDDIIEAAGELGD--------KTLLPVLDTMLYKFDDNEIITSAIDKLK  274 (276)
T ss_dssp             HHHHHHTSSS--CCHHHHHHHHHHCC--------GGGHHHHHHHHTTSSCCHHHHHHHHHHT
T ss_pred             HHHHHhCChH--HHHHHHHHHHHcCC--------HHHHHHHHHHHccCCCHHHHHHHHHHHc
Confidence            8888777654  78899999998753        4567888776665 47889999998874

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.67  E-value=6.9e-14  Score=136.59  Aligned_cols=339  Identities=14%  Similarity=0.132  Sum_probs=246.2

Q ss_pred             HHHHHHhhcCCCCcchhhhhhhhhhhcC--CCChH---HHHHHHHHHHHhcC-CCChHHHHHHHHhHHHHHHhhCc---h
Q 009975           61 IPLVKRLAAGEWFTARVSACGLFHIAYP--SAPDI---LKTELRSIYTQLCQ-DDMPMVRRSAASNLGKFAATVEP---A  131 (521)
Q Consensus        61 ~p~i~~~~~~~~~~~r~~~~~~~~~~~~--~~~~~---~~~~l~~~l~~l~~-~~~~~vr~~a~~~l~~l~~~~~~---~  131 (521)
                      ++.+.+...+++...+..++..+..+..  +.++.   ....++|.+.++++ +.++.++..|+.+|..++.....   .
T Consensus        78 l~~~~~~~~s~~~~~~~~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~~~~  157 (503)
T d1wa5b_          78 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKV  157 (503)
T ss_dssp             HHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCCchHHHHHHCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            3434444455555555566555554432  22211   33446778887776 45788999999999998853221   1


Q ss_pred             hhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcCh---hhhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCC
Q 009975          132 HLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP---QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP  208 (521)
Q Consensus       132 ~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~  208 (521)
                      .....++|.+..++.+++..++..++.+++.++..-..   ......+++.+..++.+.+..++..++.++..++.....
T Consensus       158 ~~~~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~~~  237 (503)
T d1wa5b_         158 VVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKP  237 (503)
T ss_dssp             HHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSS
T ss_pred             HHhCCChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhhcccCCHHHHHHHHHHHHHHhcCCcc
Confidence            23445788899999999999999999999999865321   122345788888999999999999999999988754322


Q ss_pred             Cc---cccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHH---HHHHhhhHHHHHhccCCcHHHHHHHHHHHHcccc
Q 009975          209 EP---TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE---LAIQHILPCVKELSSDSSQHVRSALASVIMGMAP  282 (521)
Q Consensus       209 ~~---~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~  282 (521)
                      ..   ....++|.+..++.+++++++..++.++..++......   .+...+++.+..++.++++.++..++.+++.++.
T Consensus       238 ~~~~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~  317 (503)
T d1wa5b_         238 QPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVT  317 (503)
T ss_dssp             CCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTT
T ss_pred             chHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccCCchhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHHHHHH
Confidence            11   23568999999999999999999999999887643221   2234578888999999999999999999999986


Q ss_pred             ccChHH---HHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhc---hhhHhhhHHHHHHHHhcCCChHHHHHHHHHhH
Q 009975          283 LLGKDA---TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG---IDLLSQSLLPAIVELAEDRHWRVRLAIIEYIP  356 (521)
Q Consensus       283 ~~~~~~---~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~  356 (521)
                      ..+...   ....+++.+..++.++++.+|..++.++..++..-.   .......++|.+.+.+.+.++.++..++.++.
T Consensus       318 ~~~~~~~~~~~~~~l~~l~~ll~~~~~~i~~~~~~~l~nl~~~~~~~~~~i~~~~~l~~li~~l~~~~~~v~~~a~~~l~  397 (503)
T d1wa5b_         318 GNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAIS  397 (503)
T ss_dssp             SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhhccHHHHHHHHHccccchhHHhcccCChhHHHHHHHHHH
Confidence            543321   223578999999999999999999999999864311   11233577899999999999999999999999


Q ss_pred             HHHhhhChh--h----hHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Q 009975          357 LLASQLGVG--F----FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAE  399 (521)
Q Consensus       357 ~l~~~~~~~--~----~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~  399 (521)
                      .++......  .    ....+++.+..++...+.++...++.++..+..
T Consensus       398 nl~~~~~~~~~~~~~l~~~~~l~~l~~~L~~~d~~~~~~~L~~l~~ll~  446 (503)
T d1wa5b_         398 NASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILK  446 (503)
T ss_dssp             HHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHhcccccHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            888664321  1    123356788888998899998888888887764

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.29  E-value=3.4e-08  Score=103.58  Aligned_cols=477  Identities=10%  Similarity=0.067  Sum_probs=261.8

Q ss_pred             CchhHHHHHHHHHHHHHHhhcChhHHHHhHHHHHHHhhc-CC-CCcchhhhhhhhh----hhcC------CCChHHHHHH
Q 009975           31 VEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAA-GE-WFTARVSACGLFH----IAYP------SAPDILKTEL   98 (521)
Q Consensus        31 ~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~p~i~~~~~-~~-~~~~r~~~~~~~~----~~~~------~~~~~~~~~l   98 (521)
                      +-++..|+.|...|..+...  |     .+...+.+... ++ +..+|..|...+.    ..+.      ..+++.+..+
T Consensus        14 s~~~~~~k~Ae~~L~~~~~~--p-----~f~~~L~~i~~~~~~~~~iR~~A~i~lKn~i~~~W~~~~~~~~i~~e~k~~I   86 (959)
T d1wa5c_          14 SVIASTAKTSERNLRQLETQ--D-----GFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENGNHLLPANNVELI   86 (959)
T ss_dssp             TTSGGGHHHHHHHHHHHHTS--T-----THHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSSSCBSSCHHHHHHH
T ss_pred             CCChHHHHHHHHHHHHHHcC--C-----CHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcccccccCCCCHHHHHHH
Confidence            34666899999999887553  2     22333333333 32 3467877765443    2232      2566667777


Q ss_pred             HHHHHHhcCCCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcChh----h---
Q 009975           99 RSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ----D---  171 (521)
Q Consensus        99 ~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~----~---  171 (521)
                      ...+.+.+.+++..+|...+.+++.++..-.+ ..|+.++|.+.+.+++++...+..++.++..+.+.+...    .   
T Consensus        87 k~~ll~~l~~~~~~ir~~l~~~i~~I~~~d~p-~~Wp~ll~~l~~~l~s~~~~~~~~~L~~l~~i~k~~~~~~~~~~~~~  165 (959)
T d1wa5c_          87 KKEIVPLMISLPNNLQVQIGEAISSIADSDFP-DRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDELFL  165 (959)
T ss_dssp             HHHHHHHHHHSCHHHHHHHHHHHHHHHHHHST-TTCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSCCCHHHHH
T ss_pred             HHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCc-cccHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHhhhcchhHHh
Confidence            77777666677889999999999999986543 568999999999999988888999999999998764321    0   


Q ss_pred             ----hhhhhHHHHHHhc-------C-CCC-hHHHHHHHHHHH---HHHHHhCCCccc-------cchHHHHHHhcCCC--
Q 009975          172 ----CVAHILPVIVNFS-------Q-DKS-WRVRYMVANQLY---ELCEAVGPEPTR-------MDLVPAYVRLLRDN--  226 (521)
Q Consensus       172 ----~~~~l~~~l~~~~-------~-d~~-~~vR~~~~~~l~---~i~~~~~~~~~~-------~~l~~~l~~~l~d~--  226 (521)
                          ..+.+.+.+...+       . ... ...-......+.   .+..........       ..+...+...+...  
T Consensus       166 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  245 (959)
T d1wa5c_         166 EIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGIFHKYLSYSNP  245 (959)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTHHHHHHHHHHHHSCCSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHhcccc
Confidence                1112223222221       1 111 111111111111   111111111101       12233333333211  


Q ss_pred             -------------hHHHHHHHHHhHHHHHhhhCHH--HHHHhhhHHHHH----hccC-CcHHHHHHHHHHHHccccccCh
Q 009975          227 -------------EAEVRIAAAGKVTKFCRILNPE--LAIQHILPCVKE----LSSD-SSQHVRSALASVIMGMAPLLGK  286 (521)
Q Consensus       227 -------------~~~vr~~a~~~l~~l~~~~~~~--~~~~~~~~~l~~----~~~d-~~~~vr~~~~~~l~~i~~~~~~  286 (521)
                                   ...++......+..+.+..+..  .+.+.+++.+.+    ...+ ....+...+...+..+......
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~  325 (959)
T d1wa5c_         246 LLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIPKY  325 (959)
T ss_dssp             CCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSHHH
T ss_pred             cccCchhhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHhhHHH
Confidence                         1246777777777666654321  122223333322    2222 3445555555555554432211


Q ss_pred             ------HHHHHhHH-HHHHHhhc-----------------------CCChHHHHHHHHHHHHhhhhhchhhHhhhHHHHH
Q 009975          287 ------DATIEQLL-PIFLSLLK-----------------------DEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAI  336 (521)
Q Consensus       287 ------~~~~~~l~-~~l~~~l~-----------------------d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l  336 (521)
                            ......++ +.+...+.                       +.....|..+...+..+....+.... ..+.+.+
T Consensus       326 ~~~~~~~~~l~~i~~~li~~~~~~~~~d~e~~~~dp~~~~~~~~~~~~~~~~r~~a~~ll~~l~~~~~~~~~-~~~~~~i  404 (959)
T d1wa5c_         326 FEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNEVLVT-NIFLAHM  404 (959)
T ss_dssp             HGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCHHHHH-HHHHHHH
T ss_pred             HHHHhhhhHHHHHHHHHHHHHhcCCHHHHHHHhcchHHHHHHHhhhcccccHHHHHHHHHHHHHHhccccch-HHHHHHH
Confidence                  11111221 22222221                       11123466677777777766553322 3444444


Q ss_pred             HHHh------cCCChHHHHHHHHHhHHHHhhhCh-----------hhhHHHHHHHHHHH---cCCCcHHHHHHHHHHHHH
Q 009975          337 VELA------EDRHWRVRLAIIEYIPLLASQLGV-----------GFFDDKLGALCMQW---LQDKVYSIRDAAANNLKR  396 (521)
Q Consensus       337 ~~~~------~~~~~~vr~~~~~~l~~l~~~~~~-----------~~~~~~l~~~l~~~---l~d~~~~vr~~a~~~l~~  396 (521)
                      .+.+      .+.+|..|.+++..++.+....+.           ..+.+.+.+.+...   ..++...+|..++..++.
T Consensus       405 ~~~~~~~~~~~~~~~~~~e~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~~~lr~~~~~~i~~  484 (959)
T d1wa5c_         405 KGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYT  484 (959)
T ss_dssp             HHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHH
T ss_pred             HHHHHhhccCCccchHHHHHHHHHHHHHHhhhhhhhhhhhcccchhhHHHHHHHHHHHHHccCCCchHHHHHHHHHHHHH
Confidence            4433      346899999999888887643211           11233344433333   345677899999999999


Q ss_pred             HHHHhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccCh----------HH---HhhcHHHHHHhhcCCCCch
Q 009975          397 LAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS----------EI---TCSRLLPVVINASKDRVPN  463 (521)
Q Consensus       397 l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~----------~~---~~~~il~~l~~~l~d~~~~  463 (521)
                      +......+. ...+++.+...+.+++..+|..|+.++..+......          +.   +.+.++..++..+.+....
T Consensus       485 ~~~~~~~~~-~~~~~~~l~~~L~~~~~~V~~~a~~al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~~l~~~~~~  563 (959)
T d1wa5c_         485 FRNQLTKAQ-LIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSS  563 (959)
T ss_dssp             TGGGSCHHH-HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCC
T ss_pred             HHhhccHHH-HHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhhcccccchhhccHHHHHhhHHHHHHHHHHHHHhhcch
Confidence            987766554 467899999999999999999999999999864321          11   2344555556655444333


Q ss_pred             H-----HHHHHHHHHHHHhhhchH--HH----HhhHHHHHHHhcCC-CCccHHHHHHHHHHHHHHh
Q 009975          464 I-----KFNVAKVLQSLIPIVDQS--MV----EKTIRPCLVELTED-PDVDVRFFATQAIQSIDHV  517 (521)
Q Consensus       464 V-----R~~a~~~l~~~~~~~~~~--~~----~~~~~~~l~~l~~D-~~~~vr~~a~~al~~l~~~  517 (521)
                      .     +.....++..+...++..  .+    .+.+.+.+.+..++ .+......+.+++..+...
T Consensus       564 ~~~~~~~~~ll~~l~~ii~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~e~l~~l~~~  629 (959)
T d1wa5c_         564 PEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNY  629 (959)
T ss_dssp             HHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHT
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence            2     234777887777665532  12    23444444444444 3455555666666665543

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.27  E-value=2.2e-13  Score=115.02  Aligned_cols=182  Identities=19%  Similarity=0.275  Sum_probs=106.6

Q ss_pred             hcCCCChHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhhhHHHHHhc
Q 009975          183 FSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELS  262 (521)
Q Consensus       183 ~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~  262 (521)
                      .+.|+.+++|..+++.          .     -+..+..+++|+++.||..++..|+               .+.+..+.
T Consensus        50 ~l~~p~~e~Ra~Aa~~----------a-----~~~~L~~Ll~D~d~~VR~~AA~~Lp---------------~~~L~~L~   99 (233)
T d1lrva_          50 YLADPFWERRAIAVRY----------S-----PVEALTPLIRDSDEVVRRAVAYRLP---------------REQLSALM   99 (233)
T ss_dssp             GTTCSSHHHHHHHHTT----------S-----CGGGGGGGTTCSSHHHHHHHHTTSC---------------SGGGGGTT
T ss_pred             HhcCCcHHHHHHHHhc----------C-----CHHHHHHHhcCCCHHHHHHHHHHcC---------------HHHHHHHh
Confidence            5667777777655431          0     0234456777777777777765442               13355666


Q ss_pred             cCCcHHHHHHHHHHHHccccccChHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHhcC
Q 009975          263 SDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAED  342 (521)
Q Consensus       263 ~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~  342 (521)
                      .|+++.||..++..++               .+.+..+++|+++.||..++..+.       .        +.+..+.+|
T Consensus       100 ~D~d~~VR~~aa~~l~---------------~~~L~~Ll~D~d~~VR~~aa~~~~-------~--------~~L~~L~~D  149 (233)
T d1lrva_         100 FDEDREVRITVADRLP---------------LEQLEQMAADRDYLVRAYVVQRIP-------P--------GRLFRFMRD  149 (233)
T ss_dssp             TCSCHHHHHHHHHHSC---------------TGGGGGGTTCSSHHHHHHHHHHSC-------G--------GGGGGTTTC
T ss_pred             cCCChhHHHHHHhccC---------------HHHHHHHhcCCCHHHHHHHHhccc-------h--------hHHHHHhcC
Confidence            7777777777765431               122344567777777777765421       1        112345567


Q ss_pred             CChHHHHHHHHHhHHHHhhhChhhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCcc
Q 009975          343 RHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPH  422 (521)
Q Consensus       343 ~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~  422 (521)
                      +++.||..++..+       +.        +.+..+++|+++.||..++..++       .        +.+..+++|++
T Consensus       150 ~d~~VR~~aA~~~-------~~--------~~L~~l~~D~d~~VR~~aa~~L~-------~--------~~L~~l~~D~d  199 (233)
T d1lrva_         150 EDRQVRKLVAKRL-------PE--------ESLGLMTQDPEPEVRRIVASRLR-------G--------DDLLELLHDPD  199 (233)
T ss_dssp             SCHHHHHHHHHHS-------CG--------GGGGGSTTCSSHHHHHHHHHHCC-------G--------GGGGGGGGCSS
T ss_pred             CCHHHHHHHHHhc-------CH--------HHHHHHccCCCHHHHHHHHHhcC-------c--------HHHHHHHhCCC
Confidence            7777777665432       22        23445667777777777665432       1        23455667777


Q ss_pred             hHHHHHHHHHHHHhhcccChHHHhhcHHHHHHhhcCCCCchHHHHHHH
Q 009975          423 YLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAK  470 (521)
Q Consensus       423 ~~~r~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~VR~~a~~  470 (521)
                      |.+|.++++.+       +         +.++..|.|+++.||..+++
T Consensus       200 ~~VR~aaae~~-------~---------~~ll~~L~D~d~~VR~aA~~  231 (233)
T d1lrva_         200 WTVRLAAVEHA-------S---------LEALRELDEPDPEVRLAIAG  231 (233)
T ss_dssp             HHHHHHHHHHS-------C---------HHHHHHCCCCCHHHHHHHHC
T ss_pred             HHHHHHHHHhc-------c---------HHHHHHhCCCCHHHHHHHHH
Confidence            88777665321       1         23455667777777777653

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.26  E-value=5.5e-13  Score=112.59  Aligned_cols=184  Identities=22%  Similarity=0.226  Sum_probs=132.8

Q ss_pred             HHhcCCCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcChhhhhhhhHHHHHH
Q 009975          103 TQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVN  182 (521)
Q Consensus       103 ~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~  182 (521)
                      ..++.|+.+++|..|...       .+        ...+..+++|+++.||..++..|+       .        +.+..
T Consensus        48 ~~~l~~p~~e~Ra~Aa~~-------a~--------~~~L~~Ll~D~d~~VR~~AA~~Lp-------~--------~~L~~   97 (233)
T d1lrva_          48 VQYLADPFWERRAIAVRY-------SP--------VEALTPLIRDSDEVVRRAVAYRLP-------R--------EQLSA   97 (233)
T ss_dssp             GGGTTCSSHHHHHHHHTT-------SC--------GGGGGGGTTCSSHHHHHHHHTTSC-------S--------GGGGG
T ss_pred             HHHhcCCcHHHHHHHHhc-------CC--------HHHHHHHhcCCCHHHHHHHHHHcC-------H--------HHHHH
Confidence            456788999999766531       11        235567889999999999875432       1        23567


Q ss_pred             hcCCCChHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhhhHHHHHhc
Q 009975          183 FSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELS  262 (521)
Q Consensus       183 ~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~  262 (521)
                      +..|+++.||..++..+.               .+.+..+++|+++.||..+...+       +        .+.+..+.
T Consensus        98 L~~D~d~~VR~~aa~~l~---------------~~~L~~Ll~D~d~~VR~~aa~~~-------~--------~~~L~~L~  147 (233)
T d1lrva_          98 LMFDEDREVRITVADRLP---------------LEQLEQMAADRDYLVRAYVVQRI-------P--------PGRLFRFM  147 (233)
T ss_dssp             TTTCSCHHHHHHHHHHSC---------------TGGGGGGTTCSSHHHHHHHHHHS-------C--------GGGGGGTT
T ss_pred             HhcCCChhHHHHHHhccC---------------HHHHHHHhcCCCHHHHHHHHhcc-------c--------hhHHHHHh
Confidence            789999999998876531               13466678999999999887542       1        23455678


Q ss_pred             cCCcHHHHHHHHHHHHccccccChHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHhcC
Q 009975          263 SDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAED  342 (521)
Q Consensus       263 ~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~  342 (521)
                      .|+++.||..++..++               .+.+..+++|+++.||..++..++       .        |.+..+.+|
T Consensus       148 ~D~d~~VR~~aA~~~~---------------~~~L~~l~~D~d~~VR~~aa~~L~-------~--------~~L~~l~~D  197 (233)
T d1lrva_         148 RDEDRQVRKLVAKRLP---------------EESLGLMTQDPEPEVRRIVASRLR-------G--------DDLLELLHD  197 (233)
T ss_dssp             TCSCHHHHHHHHHHSC---------------GGGGGGSTTCSSHHHHHHHHHHCC-------G--------GGGGGGGGC
T ss_pred             cCCCHHHHHHHHHhcC---------------HHHHHHHccCCCHHHHHHHHHhcC-------c--------HHHHHHHhC
Confidence            9999999998876432               234567789999999999987653       1        234557789


Q ss_pred             CChHHHHHHHHHhHHHHhhhChhhhHHHHHHHHHHHcCCCcHHHHHHHHH
Q 009975          343 RHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAAN  392 (521)
Q Consensus       343 ~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~  392 (521)
                      ++|.||.++++.+       +         +.++..|.|+++.||.++.+
T Consensus       198 ~d~~VR~aaae~~-------~---------~~ll~~L~D~d~~VR~aA~~  231 (233)
T d1lrva_         198 PDWTVRLAAVEHA-------S---------LEALRELDEPDPEVRLAIAG  231 (233)
T ss_dssp             SSHHHHHHHHHHS-------C---------HHHHHHCCCCCHHHHHHHHC
T ss_pred             CCHHHHHHHHHhc-------c---------HHHHHHhCCCCHHHHHHHHH
Confidence            9999999887543       2         23456789999999998864

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.18  E-value=6.7e-08  Score=101.28  Aligned_cols=400  Identities=11%  Similarity=0.099  Sum_probs=224.1

Q ss_pred             CChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHhhh-cC--------hhhhhhhhHH
Q 009975          109 DMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDD-QDSVRLLAVEGCAALGKL-LE--------PQDCVAHILP  178 (521)
Q Consensus       109 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~-~~~vr~~a~~~l~~l~~~-~~--------~~~~~~~l~~  178 (521)
                      .+|..|+.|-+.|..+-..   +.+...++.++   .+++ +..+|..|+-.+.+.... ..        ++..+..+..
T Consensus        15 ~~~~~~k~Ae~~L~~~~~~---p~f~~~L~~i~---~~~~~~~~iR~~A~i~lKn~i~~~W~~~~~~~~i~~e~k~~Ik~   88 (959)
T d1wa5c_          15 VIASTAKTSERNLRQLETQ---DGFGLTLLHVI---ASTNLPLSTRLAGALFFKNFIKRKWVDENGNHLLPANNVELIKK   88 (959)
T ss_dssp             TSGGGHHHHHHHHHHHHTS---TTHHHHHHHHH---HCTTSCHHHHHHHHHHHHHHHHHHSBCSSSCBSSCHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHcC---CCHHHHHHHHH---hcCCCCHHHHHHHHHHHHHHHHHhcccccccCCCCHHHHHHHHH
Confidence            4677999999999887432   23333333332   2233 457999998888776654 21        2234445555


Q ss_pred             HHHHhcCCCChHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCH-----H-----
Q 009975          179 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP-----E-----  248 (521)
Q Consensus       179 ~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~-----~-----  248 (521)
                      .+...+.+++..+|..++.+++.+++.-.++ .|++++|.+.+.+++++...+..++.++..+.+....     +     
T Consensus        89 ~ll~~l~~~~~~ir~~l~~~i~~I~~~d~p~-~Wp~ll~~l~~~l~s~~~~~~~~~L~~l~~i~k~~~~~~~~~~~~~~~  167 (959)
T d1wa5c_          89 EIVPLMISLPNNLQVQIGEAISSIADSDFPD-RWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDELFLEI  167 (959)
T ss_dssp             HHHHHHHHSCHHHHHHHHHHHHHHHHHHSTT-TCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSCCCHHHHHHH
T ss_pred             HHHHHHhCCcHHHHHHHHHHHHHHHHHhCcc-ccHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHhhhcchhHHhHH
Confidence            5555556678899999999999999865543 4789999999999998888999999999998875421     1     


Q ss_pred             -HHHHhhhHHHHHhc-------cC-Cc--HHH------HHHHHHHHHcccc-ccCh--HHHHHhHHHHHHHhhcCCC---
Q 009975          249 -LAIQHILPCVKELS-------SD-SS--QHV------RSALASVIMGMAP-LLGK--DATIEQLLPIFLSLLKDEF---  305 (521)
Q Consensus       249 -~~~~~~~~~l~~~~-------~d-~~--~~v------r~~~~~~l~~i~~-~~~~--~~~~~~l~~~l~~~l~d~~---  305 (521)
                       .+.+.+.+.+..++       .. ..  ...      -....+.+..+.. ....  ......+...+...+....   
T Consensus       168 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  247 (959)
T d1wa5c_         168 KLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGIFHKYLSYSNPLL  247 (959)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTHHHHHHHHHHHHSCCSCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHhcccccc
Confidence             11222333332221       11 11  000      0111111111111 1111  1112334444555544221   


Q ss_pred             ------------hHHHHHHHHHHHHhhhhhchhh--HhhhHHHHHHHHh----c-CCChHHHHHHHHHhHHHHhhhCh--
Q 009975          306 ------------PDVRLNIISKLDQVNQVIGIDL--LSQSLLPAIVELA----E-DRHWRVRLAIIEYIPLLASQLGV--  364 (521)
Q Consensus       306 ------------~~vr~~a~~~l~~~~~~~~~~~--~~~~~~~~l~~~~----~-~~~~~vr~~~~~~l~~l~~~~~~--  364 (521)
                                  ..++...+..+..+.+..+...  +.+.+++.+.+++    . .....+...++..+..+.+....  
T Consensus       248 ~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~  327 (959)
T d1wa5c_         248 EDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIPKYFE  327 (959)
T ss_dssp             C------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSHHHHG
T ss_pred             cCchhhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHhhHHHHH
Confidence                        2456666666666655433211  1122333333322    1 22334555555555555433211  


Q ss_pred             -----hhhHHHHHHHHHHHcC-----------C------------CcHHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHh
Q 009975          365 -----GFFDDKLGALCMQWLQ-----------D------------KVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLE  416 (521)
Q Consensus       365 -----~~~~~~l~~~l~~~l~-----------d------------~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~  416 (521)
                           +.+...+.+++..++.           |            ..+..|.++...+..+....+.. ....+.+.+..
T Consensus       328 ~~~~~~~l~~i~~~li~~~~~~~~~d~e~~~~dp~~~~~~~~~~~~~~~~r~~a~~ll~~l~~~~~~~-~~~~~~~~i~~  406 (959)
T d1wa5c_         328 IFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNEVL-VTNIFLAHMKG  406 (959)
T ss_dssp             GGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCHHH-HHHHHHHHHHH
T ss_pred             HHhhhhHHHHHHHHHHHHHhcCCHHHHHHHhcchHHHHHHHhhhcccccHHHHHHHHHHHHHHhcccc-chHHHHHHHHH
Confidence                 1111222223333221           1            12235777778888887665433 22334444433


Q ss_pred             hh------cCcchHHHHHHHHHHHHhhcccCh-----------HHHhhcHHHHH---HhhcCCCCchHHHHHHHHHHHHH
Q 009975          417 MI------NNPHYLYRMTILRAISLLAPVMGS-----------EITCSRLLPVV---INASKDRVPNIKFNVAKVLQSLI  476 (521)
Q Consensus       417 ~l------~~~~~~~r~~a~~~l~~l~~~~~~-----------~~~~~~il~~l---~~~l~d~~~~VR~~a~~~l~~~~  476 (521)
                      .+      .+.+|..|.+++..++.+....+.           ..+.+.+.+.+   +....++.+.+|..++.+++...
T Consensus       407 ~~~~~~~~~~~~~~~~e~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~~~lr~~~~~~i~~~~  486 (959)
T d1wa5c_         407 FVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFR  486 (959)
T ss_dssp             HHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTG
T ss_pred             HHHhhccCCccchHHHHHHHHHHHHHHhhhhhhhhhhhcccchhhHHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHHH
Confidence            32      245799999999999988743211           01122223322   22335567789999999999998


Q ss_pred             hhhchHHHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHHh
Q 009975          477 PIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHV  517 (521)
Q Consensus       477 ~~~~~~~~~~~~~~~l~~l~~D~~~~vr~~a~~al~~l~~~  517 (521)
                      ....++.+ ..+++.+.+++.|++..||..|++|+..+...
T Consensus       487 ~~~~~~~~-~~~~~~l~~~L~~~~~~V~~~a~~al~~~~~~  526 (959)
T d1wa5c_         487 NQLTKAQL-IELMPILATFLQTDEYVVYTYAAITIEKILTI  526 (959)
T ss_dssp             GGSCHHHH-HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred             hhccHHHH-HHHHHHHHHHhCCCchhHHHHHHHHHHHHHHh
Confidence            87665544 67888888999999999999999999988653

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=2.9e-09  Score=101.13  Aligned_cols=147  Identities=11%  Similarity=0.055  Sum_probs=100.0

Q ss_pred             HHHHHHHHHHcC-CCcHHHHHHHHHHHHHHHHHhCH-------H-HHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcc
Q 009975          369 DKLGALCMQWLQ-DKVYSIRDAAANNLKRLAEEFGP-------E-WAMQHITPQVLEMINNPHYLYRMTILRAISLLAPV  439 (521)
Q Consensus       369 ~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~-------~-~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~  439 (521)
                      ...++.+...+. ..++.++..+..++..+......       . ......+|.+.++++++++.+|..++.+++.++..
T Consensus       282 ~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~  361 (457)
T d1xm9a1         282 SDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH  361 (457)
T ss_dssp             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS
T ss_pred             hcHHHHHHHHHhcccchHHHHHHHHHHHHHhhccccchHHHHHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhC
Confidence            345565555543 45677788877777776532211       0 11245789999999999999999999999999863


Q ss_pred             cCh-HHHhhcHHHHHHhhcCCC------CchHHHHHHHHHHHHHhhhchH---HHHhhHHHHHHHhcC-CCCccHHHHHH
Q 009975          440 MGS-EITCSRLLPVVINASKDR------VPNIKFNVAKVLQSLIPIVDQS---MVEKTIRPCLVELTE-DPDVDVRFFAT  508 (521)
Q Consensus       440 ~~~-~~~~~~il~~l~~~l~d~------~~~VR~~a~~~l~~~~~~~~~~---~~~~~~~~~l~~l~~-D~~~~vr~~a~  508 (521)
                      -.. +.+....++.++.++.+.      .+.|+..++.+|..+.......   ......++.|.+++. +.+++++..|+
T Consensus       362 ~~~~~~i~~~~i~~li~~L~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~L~~l~~~~~~~~~~~aA~  441 (457)
T d1xm9a1         362 PLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAAR  441 (457)
T ss_dssp             GGGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             hhHHHHHHHhhHHHHHHHHhccccCcCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCCCCHHHHHHHH
Confidence            222 223455677777776542      4569999999999988543221   222446777777654 45778999999


Q ss_pred             HHHHHHH
Q 009975          509 QAIQSID  515 (521)
Q Consensus       509 ~al~~l~  515 (521)
                      .++.+|.
T Consensus       442 ~~L~~L~  448 (457)
T d1xm9a1         442 LLLSDMW  448 (457)
T ss_dssp             HHHHTTS
T ss_pred             HHHHHHH
Confidence            9998773

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.16  E-value=1.9e-12  Score=97.28  Aligned_cols=110  Identities=18%  Similarity=0.236  Sum_probs=89.8

Q ss_pred             cCCCcHHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChHHHhhcHHHHHHhhcC
Q 009975          379 LQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASK  458 (521)
Q Consensus       379 l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~  458 (521)
                      |+|+++.||..|+.+|+.+    |     +..++.|...++|+++.+|..++.+++.+..        +..+|.+..+++
T Consensus         1 L~D~~~~VR~~A~~aL~~~----~-----~~~~~~L~~~l~d~~~~vR~~a~~~L~~~~~--------~~~~~~L~~~l~   63 (111)
T d1te4a_           1 MADENKWVRRDVSTALSRM----G-----DEAFEPLLESLSNEDWRIRGAAAWIIGNFQD--------ERAVEPLIKLLE   63 (111)
T ss_dssp             CCSSCCCSSSSCCSSTTSC----S-----STTHHHHHHGGGCSCHHHHHHHHHHHGGGCS--------HHHHHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHHHh----C-----HHHHHHHHHHHcCCCHHHHHHHHHHHHhcch--------hhhHHHHHhhhc
Confidence            5788999999988887653    3     2345677788999999999999999886642        346788888999


Q ss_pred             CCCchHHHHHHHHHHHHHhhhchHHHHhhHHHHHHHhcCCCCccHHHHHHHHHHH
Q 009975          459 DRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQS  513 (521)
Q Consensus       459 d~~~~VR~~a~~~l~~~~~~~~~~~~~~~~~~~l~~l~~D~~~~vr~~a~~al~~  513 (521)
                      |+++.||..++.+|+.+..        +...|.|..+++|+++.||..|..+|++
T Consensus        64 d~~~~VR~~a~~aL~~i~~--------~~~~~~L~~ll~d~~~~vr~~A~~aL~t  110 (111)
T d1te4a_          64 DDSGFVRSGAARSLEQIGG--------ERVRAAMEKLAETGTGFARKVAVNYLET  110 (111)
T ss_dssp             HCCTHHHHHHHHHHHHHCS--------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred             cchhHHHHHHHHHHHHhCc--------cchHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence            9999999999999988753        4567888889999999999999988763

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.08  E-value=2e-11  Score=91.51  Aligned_cols=108  Identities=21%  Similarity=0.249  Sum_probs=61.7

Q ss_pred             cCCChHHHHHHHHHhHHHHHhhhCHHHHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccChHHHHHhHHHHHHHhhc
Q 009975          223 LRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLK  302 (521)
Q Consensus       223 l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~  302 (521)
                      ++|+++.||..|+.+|+.+..         ..++.+...+.|+++.||..++.+++.+.        ....+|.+..+++
T Consensus         1 L~D~~~~VR~~A~~aL~~~~~---------~~~~~L~~~l~d~~~~vR~~a~~~L~~~~--------~~~~~~~L~~~l~   63 (111)
T d1te4a_           1 MADENKWVRRDVSTALSRMGD---------EAFEPLLESLSNEDWRIRGAAAWIIGNFQ--------DERAVEPLIKLLE   63 (111)
T ss_dssp             CCSSCCCSSSSCCSSTTSCSS---------TTHHHHHHGGGCSCHHHHHHHHHHHGGGC--------SHHHHHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHHHhCH---------HHHHHHHHHHcCCCHHHHHHHHHHHHhcc--------hhhhHHHHHhhhc
Confidence            345566666666666554321         12344455566666666666666666543        1234555666666


Q ss_pred             CCChHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHhcCCChHHHHHHHHHh
Q 009975          303 DEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYI  355 (521)
Q Consensus       303 d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l  355 (521)
                      |+++.||..++.+|+.+..        +..+|.+.++++|+++.+|..++.+|
T Consensus        64 d~~~~VR~~a~~aL~~i~~--------~~~~~~L~~ll~d~~~~vr~~A~~aL  108 (111)
T d1te4a_          64 DDSGFVRSGAARSLEQIGG--------ERVRAAMEKLAETGTGFARKVAVNYL  108 (111)
T ss_dssp             HCCTHHHHHHHHHHHHHCS--------HHHHHHHHHHTTSCCTHHHHHHHHHG
T ss_pred             cchhHHHHHHHHHHHHhCc--------cchHHHHHHHHcCCCHHHHHHHHHHH
Confidence            6666666666666665532        34455555666666666666665554

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=2.3e-08  Score=94.82  Aligned_cols=388  Identities=9%  Similarity=-0.025  Sum_probs=185.8

Q ss_pred             hhhHHhhhhcCchhHHHHHHHHHHHHHHhhcCh---hHHHHhHHHHHHHhhcCCCCcchhhhhhhhhhhcCCCChHHHHH
Q 009975           21 LLPPLETLCTVEETCVRDKAVESLCRIGSQMRE---SDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTE   97 (521)
Q Consensus        21 l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~---~~~~~~l~p~i~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~   97 (521)
                      .+|.|.++++++++.+|..|+.+|+.+|..-+.   .-.....+|.+.+++.+++..+|..++..+..+....++. +..
T Consensus         3 ~ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~-~~~   81 (457)
T d1xm9a1           3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTN-KLE   81 (457)
T ss_dssp             CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHH-HHH
T ss_pred             CHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHH-HHH
Confidence            478888888999999999999999999964332   1223455677777777777777877777777766443332 222


Q ss_pred             H-----HHHHHHhc-CCCChHHHHHHHHhHHHHHHhhCch--hhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcCh
Q 009975           98 L-----RSIYTQLC-QDDMPMVRRSAASNLGKFAATVEPA--HLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP  169 (521)
Q Consensus        98 l-----~~~l~~l~-~~~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~  169 (521)
                      +     ++.+..++ ++.++.+|..++..+..++......  .....+.+++..+...                      
T Consensus        82 i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~----------------------  139 (457)
T d1xm9a1          82 TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIP----------------------  139 (457)
T ss_dssp             HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHH----------------------
T ss_pred             HHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhhHHHHHhcccHHHHHHHHhh----------------------
Confidence            2     34444433 4567778888888888776543221  1111222222211100                      


Q ss_pred             hhhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhC---CCccccchHHHHHHhcCCCh------HHHHHHHHHhHH-
Q 009975          170 QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG---PEPTRMDLVPAYVRLLRDNE------AEVRIAAAGKVT-  239 (521)
Q Consensus       170 ~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~---~~~~~~~l~~~l~~~l~d~~------~~vr~~a~~~l~-  239 (521)
                        ................+..++..++..+..++....   .......+++.+.+++++..      ......+...+. 
T Consensus       140 --~~~~~~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~  217 (457)
T d1xm9a1         140 --FSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHN  217 (457)
T ss_dssp             --HHTCC---------CCCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHH
T ss_pred             --hhhhhcchhhhhcccccHHHHHHHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhh
Confidence              000000011112223344444444444433321100   00001223333333332110      001111111111 


Q ss_pred             --------------HHHhhhCHHHHHHhhhHHHHHhccCCcHHHHHHHH-HHHHcccccc--ChHHHHHhHHHHHHHhhc
Q 009975          240 --------------KFCRILNPELAIQHILPCVKELSSDSSQHVRSALA-SVIMGMAPLL--GKDATIEQLLPIFLSLLK  302 (521)
Q Consensus       240 --------------~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~-~~l~~i~~~~--~~~~~~~~l~~~l~~~l~  302 (521)
                                    .+...............    .+............ ..+.......  .........++.+..++.
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~  293 (457)
T d1xm9a1         218 LSYRLDAEVPTRYRQLEYNARNAYTEKSSTG----CFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMG  293 (457)
T ss_dssp             HTTTHHHHSCCHHHHHHHTC--------------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHH
T ss_pred             hhhhhHHHHHHHHHHHHhhhhhhhhHHHhhh----hhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHh
Confidence                          11110000000000000    00011111111111 1111111110  111122345666665554


Q ss_pred             -CCChHHHHHHHHHHHHhhhhhch-------hh-HhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhCh-hhhHHHHH
Q 009975          303 -DEFPDVRLNIISKLDQVNQVIGI-------DL-LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV-GFFDDKLG  372 (521)
Q Consensus       303 -d~~~~vr~~a~~~l~~~~~~~~~-------~~-~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~-~~~~~~l~  372 (521)
                       ..+++++..+...+..+......       .. .....+|.+.++++++++.+|..++.++..++..... +......+
T Consensus       294 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~~~~~~~i~~~~i  373 (457)
T d1xm9a1         294 KSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVF  373 (457)
T ss_dssp             HCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHHHTH
T ss_pred             cccchHHHHHHHHHHHHHhhccccchHHHHHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhChhHHHHHHHhhH
Confidence             45678888888877776542211       11 1245688888888999999999999988888754322 22334455


Q ss_pred             HHHHHHcCC------CcHHHHHHHHHHHHHHHHHhCHH---HHHhhhHHHHHhhhcC-cchHHHHHHHHHHHHhh
Q 009975          373 ALCMQWLQD------KVYSIRDAAANNLKRLAEEFGPE---WAMQHITPQVLEMINN-PHYLYRMTILRAISLLA  437 (521)
Q Consensus       373 ~~l~~~l~d------~~~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~~-~~~~~r~~a~~~l~~l~  437 (521)
                      |.+..++.+      .+.+++..++.++..+.......   ......++.|..++.+ ++..++.+|+.++..+.
T Consensus       374 ~~li~~L~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~L~~l~~~~~~~~~~~aA~~~L~~L~  448 (457)
T d1xm9a1         374 PEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMW  448 (457)
T ss_dssp             HHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHhccccCcCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            666666542      35678888888888776432211   1123356677776654 45677777777777765

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.81  E-value=7.7e-08  Score=84.01  Aligned_cols=145  Identities=17%  Similarity=0.142  Sum_probs=106.1

Q ss_pred             HHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCH---HHHHhhhHHHHHhhhc-CcchHHHHHHHHHHHHhhcccChH---H
Q 009975          372 GALCMQWLQDKVYSIRDAAANNLKRLAEEFGP---EWAMQHITPQVLEMIN-NPHYLYRMTILRAISLLAPVMGSE---I  444 (521)
Q Consensus       372 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~-~~~~~~r~~a~~~l~~l~~~~~~~---~  444 (521)
                      .+++..+++++++.+|..|+.+++.++.....   .......+|.+..++. +++..+|..++.+++.++......   .
T Consensus        61 ~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~  140 (264)
T d1xqra1          61 HLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQF  140 (264)
T ss_dssp             HHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHH
Confidence            34444577888889999999999888853211   1234567888888774 567888999999998888644322   2


Q ss_pred             HhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhch---HHHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 009975          445 TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ---SMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDH  516 (521)
Q Consensus       445 ~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~---~~~~~~~~~~l~~l~~D~~~~vr~~a~~al~~l~~  516 (521)
                      .....++.+..++.++++.++..++.++..++...+.   .......+|.|..+++++++++|..|..++..|..
T Consensus       141 ~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~  215 (264)
T d1xqra1         141 LRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVT  215 (264)
T ss_dssp             HHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHT
T ss_pred             HHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHHHHHhhhHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Confidence            3456688888888888999999999999888764322   22334578888888888999999999999888754

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=9.6e-07  Score=76.82  Aligned_cols=175  Identities=10%  Similarity=0.069  Sum_probs=127.5

Q ss_pred             ChHHHHHHHHHhHHHHHhhhCHH-HHH--HhhhHHHHHhccCCcHHHHHHHHHHHHccccccCh---HHHHHhHHHHHHH
Q 009975          226 NEAEVRIAAAGKVTKFCRILNPE-LAI--QHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK---DATIEQLLPIFLS  299 (521)
Q Consensus       226 ~~~~vr~~a~~~l~~l~~~~~~~-~~~--~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~---~~~~~~l~~~l~~  299 (521)
                      .+.+.|..|+.+|..+++..+.. .+.  .-+.+.+..+++++++.+|..++.+++.++..-+.   .......+|.+..
T Consensus        29 ~~~~~~~~Al~~L~~L~~~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~  108 (264)
T d1xqra1          29 ADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLR  108 (264)
T ss_dssp             HHHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHcCHHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHH
Confidence            45677888888888877654322 111  11334445677889999999999999999864332   2223467889998


Q ss_pred             hhc-CCChHHHHHHHHHHHHhhhhhchh---hHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChh---hhHHHHH
Q 009975          300 LLK-DEFPDVRLNIISKLDQVNQVIGID---LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG---FFDDKLG  372 (521)
Q Consensus       300 ~l~-d~~~~vr~~a~~~l~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~  372 (521)
                      ++. +.++.+|..++.++..++......   ......++.+.+++.+.+..++..++..+..++...+..   ......+
T Consensus       109 lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~v  188 (264)
T d1xqra1         109 LLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMV  188 (264)
T ss_dssp             HHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHH
T ss_pred             HhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHHHHHhhhH
Confidence            885 678899999999999987654321   123566888888889999999999999998887654321   2233468


Q ss_pred             HHHHHHcCCCcHHHHHHHHHHHHHHHHH
Q 009975          373 ALCMQWLQDKVYSIRDAAANNLKRLAEE  400 (521)
Q Consensus       373 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~  400 (521)
                      |.+..+++++++.+|..++.+|..++..
T Consensus       189 ~~L~~lL~~~~~~~~~~a~~aL~~L~~~  216 (264)
T d1xqra1         189 QQLVALVRTEHSPFHEHVLGALCSLVTD  216 (264)
T ss_dssp             HHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHhc
Confidence            8999999999999999999999988743

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=98.25  E-value=0.00016  Score=64.11  Aligned_cols=204  Identities=11%  Similarity=0.030  Sum_probs=120.5

Q ss_pred             HHHHHhhcCCChhHHHHHHHHHHHHhhhcChhhhhhhhHHHHHHhcCC----CChHHHHHHHHHHHHHHHHhCC--Cccc
Q 009975          139 SIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQD----KSWRVRYMVANQLYELCEAVGP--EPTR  212 (521)
Q Consensus       139 ~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d----~~~~vR~~~~~~l~~i~~~~~~--~~~~  212 (521)
                      ..+.+++.+..-..- .+...+..++....+.   ...+..+..++++    .++.+|..+.-++|.++.....  ....
T Consensus        91 ~~i~~~I~~~~ls~~-ea~~~l~~l~~~~~Pt---~~~l~~~~~l~~~~~~~~~~~l~~~a~La~gslv~~~c~~~~~~~  166 (336)
T d1lsha1          91 LFLKRTLASEQLTSA-EATQIVASTLSNQQAT---RESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCP  166 (336)
T ss_dssp             HHHHHHHHTTCSCHH-HHHHHHHHHHHTCCCC---HHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCC
T ss_pred             HHHHHHHHcCCCCHH-HHHHHHHHHhccCCCC---HHHHHHHHHHHcCcccccchhHHHHHHHHHHHHHHHHhcCCCCCc
Confidence            444444444433222 2344555554333221   2344444555554    5788999999999999875432  1112


Q ss_pred             c----chHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhhhHHHHHhcc-------CCcHHHHHHHHHHHHccc
Q 009975          213 M----DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSS-------DSSQHVRSALASVIMGMA  281 (521)
Q Consensus       213 ~----~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~-------d~~~~vr~~~~~~l~~i~  281 (521)
                      .    .+...+.+..+..+.+.+..++++||+++.        +..++.+...+.       +.+..+|..+++++..+.
T Consensus       167 ~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~--------p~~i~~l~~~l~~~~~~~~~~~~~vR~aAi~Alr~~~  238 (336)
T d1lsha1         167 DELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ--------PNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIA  238 (336)
T ss_dssp             GGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC--------GGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGG
T ss_pred             HHHHHHHHHHHHHhhcccchHHHHHHHHHHhccCC--------HhHHHHHHHHhcccccccccccHHHHHHHHHHHHHhh
Confidence            2    344444444555666777788888888764        223444444443       236789999999999886


Q ss_pred             cccChHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHH-HhcCCChHHHHHHHHHhHHHHh
Q 009975          282 PLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVE-LAEDRHWRVRLAIIEYIPLLAS  360 (521)
Q Consensus       282 ~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~vr~~~~~~l~~l~~  360 (521)
                      ... +....+.+++++.+  .+.+.++|..|...+-...+.       ..++..+.. +-.+++..|+..+...|..+++
T Consensus       239 ~~~-p~~v~~~l~~i~~n--~~e~~EvRiaA~~~lm~t~P~-------~~~l~~i~~~l~~E~~~QV~sfv~S~l~~la~  308 (336)
T d1lsha1         239 KRD-PRKVQEIVLPIFLN--VAIKSELRIRSCIVFFESKPS-------VALVSMVAVRLRREPNLQVASFVYSQMRSLSR  308 (336)
T ss_dssp             GTC-HHHHHHHHHHHHHC--TTSCHHHHHHHHHHHHHTCCC-------HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred             hcC-cHHHHHHHHHHHcC--CCCChHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHh
Confidence            543 23334455555554  455689999998888664332       233444444 3467888888877777777666


Q ss_pred             hhCh
Q 009975          361 QLGV  364 (521)
Q Consensus       361 ~~~~  364 (521)
                      .-.+
T Consensus       309 s~~P  312 (336)
T d1lsha1         309 SSNP  312 (336)
T ss_dssp             CCSG
T ss_pred             CCCc
Confidence            5433

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=98.05  E-value=0.00029  Score=62.35  Aligned_cols=121  Identities=11%  Similarity=-0.017  Sum_probs=76.7

Q ss_pred             CChHHHHHHHHHhHHHHhhhC------hhhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHh
Q 009975          343 RHWRVRLAIIEYIPLLASQLG------VGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLE  416 (521)
Q Consensus       343 ~~~~vr~~~~~~l~~l~~~~~------~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~  416 (521)
                      .++.+|..+.-+++.++...-      .+.+.+++...+.+..+..+.+.+..++++||.+.        ....++.+..
T Consensus       139 ~~~~l~~~a~La~gslv~~~c~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g--------~p~~i~~l~~  210 (336)
T d1lsha1         139 NRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAG--------QPNSIKKIQR  210 (336)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--------CGGGHHHHHT
T ss_pred             cchhHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhcccchHHHHHHHHHHhccC--------CHhHHHHHHH
Confidence            356666666666666654421      12234555556666666677777777888887653        2345677777


Q ss_pred             hhcC-------cchHHHHHHHHHHHHhhcccChHHHhhcHHHHHHhhcCCCCchHHHHHHHHHHH
Q 009975          417 MINN-------PHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQS  474 (521)
Q Consensus       417 ~l~~-------~~~~~r~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~  474 (521)
                      ++.+       ....+|.+|++++..+.... +..+.+.+++.+.+  .+.+++||.+|+..+-.
T Consensus       211 ~l~~~~~~~~~~~~~vR~aAi~Alr~~~~~~-p~~v~~~l~~i~~n--~~e~~EvRiaA~~~lm~  272 (336)
T d1lsha1         211 FLPGQGKSLDEYSTRVQAEAIMALRNIAKRD-PRKVQEIVLPIFLN--VAIKSELRIRSCIVFFE  272 (336)
T ss_dssp             TSTTSSSCCCCSCHHHHHHHHHTTTTGGGTC-HHHHHHHHHHHHHC--TTSCHHHHHHHHHHHHH
T ss_pred             HhcccccccccccHHHHHHHHHHHHHhhhcC-cHHHHHHHHHHHcC--CCCChHHHHHHHHHHHh
Confidence            6644       24689999999999887643 33344445555543  34468899999888744

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.22  E-value=0.71  Score=38.72  Aligned_cols=204  Identities=12%  Similarity=0.143  Sum_probs=131.1

Q ss_pred             HHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhh-ch-----hhH--hhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhh
Q 009975          290 IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI-GI-----DLL--SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQ  361 (521)
Q Consensus       290 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~-~~-----~~~--~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~  361 (521)
                      .++++..+...+..-+.+.|+.+...+..+...- |.     +-+  ...++..+....++++-.  .    ..|.+...
T Consensus        67 ~~d~l~~Li~~L~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~~eil~~L~~gye~~eiA--l----~~G~mLRE  140 (330)
T d1upka_          67 NSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIA--L----NCGIMLRE  140 (330)
T ss_dssp             HHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTH--H----HHHHHHHH
T ss_pred             HhChHHHHHHhCCCCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcCHHHHHHHHhhcCCcchh--h----hhhHHHHH
Confidence            5677888888888888999999888888776431 11     101  134555555544444321  1    11222211


Q ss_pred             h-ChhhhHHH-----HHHHHHHHcCCCcHHHHHHHHHHHHHHHHHh---CHHHHH---hhhHHHHHhhhcCcchHHHHHH
Q 009975          362 L-GVGFFDDK-----LGALCMQWLQDKVYSIRDAAANNLKRLAEEF---GPEWAM---QHITPQVLEMINNPHYLYRMTI  429 (521)
Q Consensus       362 ~-~~~~~~~~-----l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~---~~~~~~---~~l~~~l~~~l~~~~~~~r~~a  429 (521)
                      + .-+.+...     -.--++.+++-++.+|-.-|+..+..+....   ..+++.   +.++..+..++.++||-.|..+
T Consensus       141 cik~e~lak~iL~s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~NYVtrRqS  220 (330)
T d1upka_         141 CIRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQS  220 (330)
T ss_dssp             HHTSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred             HHhhHHHHHHHHccHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcCCchHHHHHH
Confidence            1 11111111     1223457888899999988888888776432   122221   4566777788999999999999


Q ss_pred             HHHHHHhhcccChHH----H--hhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhc-hHH-------HHhhHHHHHHHh
Q 009975          430 LRAISLLAPVMGSEI----T--CSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD-QSM-------VEKTIRPCLVEL  495 (521)
Q Consensus       430 ~~~l~~l~~~~~~~~----~--~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~-~~~-------~~~~~~~~l~~l  495 (521)
                      +..+|.+...-....    |  ....+..++.+++|...+|+..|..++..++-.-. ++.       ..+.++..+..+
T Consensus       221 lKLLgelLldr~N~~vm~~Yvs~~~nLkl~M~LLrd~sk~Iq~EAFhVFKvFVANpnKp~~I~~IL~~Nr~kLl~fl~~f  300 (330)
T d1upka_         221 LKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQAKLIEFLSKF  300 (330)
T ss_dssp             HHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHTHHHHHHHHHHT
T ss_pred             HHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHhcCchhhHHHHhhhHhhhhhcCCCCCHHHHHHHHHhHHHHHHHHHhC
Confidence            999999984212111    1  25678889999999999999999999988875422 111       237788888888


Q ss_pred             cCCC
Q 009975          496 TEDP  499 (521)
Q Consensus       496 ~~D~  499 (521)
                      ..|.
T Consensus       301 ~~d~  304 (330)
T d1upka_         301 QNDR  304 (330)
T ss_dssp             TTTC
T ss_pred             CCCC
Confidence            8775

>d2b6ca1 a.118.1.17 (A:3-215) Hypothetical protein EF3068 {Enterococcus faecalis [TaxId: 1351]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: BC3264-like
domain: Hypothetical protein EF3068
species: Enterococcus faecalis [TaxId: 1351]

Probab=93.83  E-value=1.2  Score=35.38  Aligned_cols=138  Identities=7%  Similarity=-0.017  Sum_probs=91.9

Q ss_pred             HHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcChhhhhhhhHHHHHHhcCC-CChHHHHHHHHHHHHHHHHhCCCccc
Q 009975          134 KTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQD-KSWRVRYMVANQLYELCEAVGPEPTR  212 (521)
Q Consensus       134 ~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d-~~~~vR~~~~~~l~~i~~~~~~~~~~  212 (521)
                      .+.+..++..+.+++....|..|+..+.........     ..++.+..++.+ ++|.+--..+..++.....     ..
T Consensus        48 ~~~~~~l~~~L~~~~~~E~r~~a~~ll~~~~~~~~~-----~~l~~~~~~~~~~~~Wd~vD~~~~~i~~~~~~-----~~  117 (213)
T d2b6ca1          48 KEKLCQEIEAYYQKTEREYQYVAIDLALQNVQRFSL-----EEVVAFKAYVPQKAWWDSVDAWRKFFGSWVAL-----HL  117 (213)
T ss_dssp             HHHHHHHHHHHHTSSSHHHHHHHHHHHHHTGGGCCH-----HHHHHGGGGTTTTCSHHHHHHHHHHHHHHHHH-----SG
T ss_pred             HHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccCH-----HHHHHHHHHHccCccHHHHHHHHHHHHHHHHH-----hh
Confidence            456666777777888888899999888776655432     334556665554 6788777666655443321     13


Q ss_pred             cchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccC
Q 009975          213 MDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLG  285 (521)
Q Consensus       213 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~  285 (521)
                      +.+.+.+.....|++.-+|.+|+.+.-.......    .+.+...+..+..|++.-||.+...++..++..-+
T Consensus       118 ~~~~~~l~~w~~s~~~w~rR~aiv~~l~~~~~~~----~~~~~~~~~~~~~d~e~~i~kAigW~Lre~~k~~p  186 (213)
T d2b6ca1         118 TELPTIFALFYGAENFWNRRVALNLQLMLKEKTN----QDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKTNP  186 (213)
T ss_dssp             GGHHHHHHHHTTCSSHHHHHHHHHTTTTCGGGCC----HHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTCH
T ss_pred             hhHHHHHHHHHhCCCHHHHHHHHHHHHHHHHccc----HHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHCH
Confidence            4567888888888887777766544432222222    23456677788899999999999999998875543

>d2b6ca1 a.118.1.17 (A:3-215) Hypothetical protein EF3068 {Enterococcus faecalis [TaxId: 1351]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: BC3264-like
domain: Hypothetical protein EF3068
species: Enterococcus faecalis [TaxId: 1351]

Probab=93.03  E-value=0.99  Score=35.91  Aligned_cols=134  Identities=10%  Similarity=0.032  Sum_probs=73.2

Q ss_pred             hHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHhcC-CChHHHHHHHHHhHHHHhhhChhhhHHH
Q 009975          292 QLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAED-RHWRVRLAIIEYIPLLASQLGVGFFDDK  370 (521)
Q Consensus       292 ~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~vr~~~~~~l~~l~~~~~~~~~~~~  370 (521)
                      .+...+..+...+.-+.|..|+..+........     +..++.+..++.+ .+|.+-...+..+......-.     +.
T Consensus        50 ~~~~l~~~L~~~~~~E~r~~a~~ll~~~~~~~~-----~~~l~~~~~~~~~~~~Wd~vD~~~~~i~~~~~~~~-----~~  119 (213)
T d2b6ca1          50 KLCQEIEAYYQKTEREYQYVAIDLALQNVQRFS-----LEEVVAFKAYVPQKAWWDSVDAWRKFFGSWVALHL-----TE  119 (213)
T ss_dssp             HHHHHHHHHHTSSSHHHHHHHHHHHHHTGGGCC-----HHHHHHGGGGTTTTCSHHHHHHHHHHHHHHHHHSG-----GG
T ss_pred             HHHHHHHHHHcCchHHHHHHHHHHHHHHHhccC-----HHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHhh-----hh
Confidence            445555566667777777777776666554433     2334444444433 457766655544433222111     22


Q ss_pred             HHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcc
Q 009975          371 LGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPV  439 (521)
Q Consensus       371 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~  439 (521)
                      +.+.+..+.++++..+|.+++-+.-..... +   -.+.++..+.....|+.+-+|.+..++|..++..
T Consensus       120 ~~~~l~~w~~s~~~w~rR~aiv~~l~~~~~-~---~~~~~~~~~~~~~~d~e~~i~kAigW~Lre~~k~  184 (213)
T d2b6ca1         120 LPTIFALFYGAENFWNRRVALNLQLMLKEK-T---NQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKT  184 (213)
T ss_dssp             HHHHHHHHTTCSSHHHHHHHHHTTTTCGGG-C---CHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHc-c---cHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHH
Confidence            456667777888888877765432111111 1   1233455555566677777777777777666653

>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.60  E-value=1.4  Score=32.47  Aligned_cols=73  Identities=15%  Similarity=0.131  Sum_probs=55.9

Q ss_pred             hhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChHHH----hhcHHHHHHhhcCC------CCchHHHHHHHHHHHHHh
Q 009975          408 QHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEIT----CSRLLPVVINASKD------RVPNIKFNVAKVLQSLIP  477 (521)
Q Consensus       408 ~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~----~~~il~~l~~~l~d------~~~~VR~~a~~~l~~~~~  477 (521)
                      ...+..+...++++++++...++..+..+...+|..+.    ...|+..+.+++.+      ....||..++..+.....
T Consensus        44 k~a~r~l~krl~~~~~~~~l~aL~LLe~~vkNCG~~f~~evas~~Fl~~L~kli~~k~~~~~~~~~Vk~kil~li~~W~~  123 (145)
T d1ujka_          44 PLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV  123 (145)
T ss_dssp             HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHTSCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHhhccCCCCCcHHHHHHHHHHHHHHHH
Confidence            44566677778888888888899999999988887653    35677777777654      466799999998888877


Q ss_pred             hhc
Q 009975          478 IVD  480 (521)
Q Consensus       478 ~~~  480 (521)
                      .++
T Consensus       124 ~fp  126 (145)
T d1ujka_         124 GLP  126 (145)
T ss_dssp             HCT
T ss_pred             HCC
Confidence            664

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.90  E-value=4  Score=36.33  Aligned_cols=56  Identities=13%  Similarity=0.155  Sum_probs=37.3

Q ss_pred             chHHHHHHHHHHHHhhcccChHHH-hh--cHHHHHHhhcCCCCchHHHHHHHHHHHHHh
Q 009975          422 HYLYRMTILRAISLLAPVMGSEIT-CS--RLLPVVINASKDRVPNIKFNVAKVLQSLIP  477 (521)
Q Consensus       422 ~~~~r~~a~~~l~~l~~~~~~~~~-~~--~il~~l~~~l~d~~~~VR~~a~~~l~~~~~  477 (521)
                      ++.+-..||.=+|.++.+.+.... .+  ..-..+++++.+++++||..|+.++..+..
T Consensus       415 D~~~lAVAc~DiGefvr~~P~gr~il~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~  473 (477)
T d1ho8a_         415 EKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIG  473 (477)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred             CcceeehhhhhHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            556667777778888877664321 11  245567777777888888888877776654

>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: Hrs
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=91.51  E-value=1.5  Score=32.30  Aligned_cols=88  Identities=7%  Similarity=-0.023  Sum_probs=60.0

Q ss_pred             HHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcChh----hhhhhhHHHHHHhcC-CCChHHHHHHHHHHHHHHHHhCCC
Q 009975          135 TDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ----DCVAHILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGPE  209 (521)
Q Consensus       135 ~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~----~~~~~l~~~l~~~~~-d~~~~vR~~~~~~l~~i~~~~~~~  209 (521)
                      ...+..+.+.+++.++.+...|+.++..+..+.+..    .....++..+..+.. .++..||..+.+.+...+..++.+
T Consensus        41 k~a~ral~krl~~~n~~v~l~aL~LLd~~vkNcG~~f~~~i~s~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~  120 (145)
T d1dvpa1          41 KNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYAFRSS  120 (145)
T ss_dssp             HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHccchHHHHHHhhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCC
Confidence            455566666777888888889999999888887652    222334444444443 356789999999999999888776


Q ss_pred             ccccchHHHHHHh
Q 009975          210 PTRMDLVPAYVRL  222 (521)
Q Consensus       210 ~~~~~l~~~l~~~  222 (521)
                      .....+...+..+
T Consensus       121 ~~~~~i~~~y~~L  133 (145)
T d1dvpa1         121 DKYQAIKDTMTIL  133 (145)
T ss_dssp             SSCCHHHHHHHHH
T ss_pred             ccchHHHHHHHHH
Confidence            5545555555544

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.89  E-value=3.8  Score=34.18  Aligned_cols=183  Identities=9%  Similarity=0.036  Sum_probs=117.7

Q ss_pred             hhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhh-Chh-hhH------HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHH-
Q 009975          330 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL-GVG-FFD------DKLGALCMQWLQDKVYSIRDAAANNLKRLAEE-  400 (521)
Q Consensus       330 ~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~-~~~-~~~------~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~-  400 (521)
                      ..++..+...+..-++..|+.+...+..+...- |.. ...      +.++..+.....+++...-.  -..|...++. 
T Consensus        68 ~d~l~~Li~~L~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~~eil~~L~~gye~~eiAl~~--G~mLREcik~e  145 (330)
T d1upka_          68 SGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNC--GIMLRECIRHE  145 (330)
T ss_dssp             HSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHHHH--HHHHHHHHTSH
T ss_pred             hChHHHHHHhCCCCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcCHHHHHHHHhhcCCcchhhhh--hHHHHHHHhhH
Confidence            566777777777778888988888887776542 221 111      34666677777666554322  1222222211 


Q ss_pred             -hCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccC---hHHH---hhcHHHHHHhhcCCCCchHHHHHHHHHH
Q 009975          401 -FGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMG---SEIT---CSRLLPVVINASKDRVPNIKFNVAKVLQ  473 (521)
Q Consensus       401 -~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~---~~~~---~~~il~~l~~~l~d~~~~VR~~a~~~l~  473 (521)
                       +..-.....-+-.+.+....++..+-..|..++..+.-...   .+++   .+.+......++..++.-.|..+++.|+
T Consensus       146 ~lak~iL~s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~NYVtrRqSlKLLg  225 (330)
T d1upka_         146 PLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLG  225 (330)
T ss_dssp             HHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred             HHHHHHHccHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence             01111223344556678888999998888888888775322   2222   2456666778999999999999999999


Q ss_pred             HHHhhhchHHH------HhhHHHHHHHhcCCCCccHHHHHHHHHHHH
Q 009975          474 SLIPIVDQSMV------EKTIRPCLVELTEDPDVDVRFFATQAIQSI  514 (521)
Q Consensus       474 ~~~~~~~~~~~------~~~~~~~l~~l~~D~~~~vr~~a~~al~~l  514 (521)
                      .+...-....+      ...-+..+-.++.|+..+|+..|-+.++-.
T Consensus       226 elLldr~N~~vm~~Yvs~~~nLkl~M~LLrd~sk~Iq~EAFhVFKvF  272 (330)
T d1upka_         226 ELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVF  272 (330)
T ss_dssp             HHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred             HHHhhhhHHHHHHHHhCCHHHHHHHHHHhcCchhhHHHHhhhHhhhh
Confidence            99854332211      144566667789999999999999888754

>d1juqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.83  E-value=2.7  Score=31.00  Aligned_cols=75  Identities=16%  Similarity=0.133  Sum_probs=57.0

Q ss_pred             HhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChHHH----hhcHHHHHHhhcCC------CCchHHHHHHHHHHHHH
Q 009975          407 MQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEIT----CSRLLPVVINASKD------RVPNIKFNVAKVLQSLI  476 (521)
Q Consensus       407 ~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~----~~~il~~l~~~l~d------~~~~VR~~a~~~l~~~~  476 (521)
                      ....+..|...++++++.+...|+..+..+.+.+|..+.    ...++..+.+++..      ....||...+..+....
T Consensus        37 ~k~a~rai~krl~~~~~~~~l~aL~LLe~~vkNCG~~F~~evask~Fl~~l~kli~~k~~~~~~~~~Vk~kil~ll~~Wa  116 (151)
T d1juqa_          37 PQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWT  116 (151)
T ss_dssp             HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccHHHHHHHhhHHHHHHHHHHHcccCCCCcccHHHHHHHHHHHHHHH
Confidence            345666777778888888888899999999988887653    34577777777654      35679999999998888


Q ss_pred             hhhch
Q 009975          477 PIVDQ  481 (521)
Q Consensus       477 ~~~~~  481 (521)
                      ..++.
T Consensus       117 ~~f~~  121 (151)
T d1juqa_         117 MALPE  121 (151)
T ss_dssp             HHCTT
T ss_pred             HHccc
Confidence            77643

>d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.97  E-value=3.7  Score=29.92  Aligned_cols=75  Identities=16%  Similarity=0.138  Sum_probs=61.3

Q ss_pred             HhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChHHHh----hcHHHHHHhhcCC------CCchHHHHHHHHHHHHH
Q 009975          407 MQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITC----SRLLPVVINASKD------RVPNIKFNVAKVLQSLI  476 (521)
Q Consensus       407 ~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~----~~il~~l~~~l~d------~~~~VR~~a~~~l~~~~  476 (521)
                      ....+..|...++++++.+...|+..+..+...+|..+..    ..++..+.+++.+      ..+.||..++..+....
T Consensus        36 ~k~a~ral~krl~~~n~~~~l~aL~LLe~~vkNcG~~fh~evask~Fl~~l~~li~~k~~~~~~~~~Vk~kil~li~~Wa  115 (143)
T d1mhqa_          36 PTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWT  115 (143)
T ss_dssp             HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHH
Confidence            3456677888889999999999999999999999987643    5788888888764      46779999999999988


Q ss_pred             hhhch
Q 009975          477 PIVDQ  481 (521)
Q Consensus       477 ~~~~~  481 (521)
                      ..+..
T Consensus       116 ~~f~~  120 (143)
T d1mhqa_         116 VWFPE  120 (143)
T ss_dssp             HHCTT
T ss_pred             HHcCC
Confidence            87754

>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.02  E-value=5.5  Score=29.02  Aligned_cols=73  Identities=5%  Similarity=-0.010  Sum_probs=51.4

Q ss_pred             hhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChhhhH----HHHHHHHHHHcCC------CcHHHHHHHHHHHHHHHH
Q 009975          330 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD----DKLGALCMQWLQD------KVYSIRDAAANNLKRLAE  399 (521)
Q Consensus       330 ~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~----~~l~~~l~~~l~d------~~~~vr~~a~~~l~~l~~  399 (521)
                      ...+..+..-+.++++.+...++..+..+++++|..+..    ..++..+..++++      .+..|+.-++..+..+..
T Consensus        44 k~a~r~l~krl~~~~~~~~l~aL~LLe~~vkNCG~~f~~evas~~Fl~~L~kli~~k~~~~~~~~~Vk~kil~li~~W~~  123 (145)
T d1ujka_          44 PLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV  123 (145)
T ss_dssp             HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHTSCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHhhccCCCCCcHHHHHHHHHHHHHHHH
Confidence            345556666667788888888888888888888876432    3455556666543      466788888888888876


Q ss_pred             HhC
Q 009975          400 EFG  402 (521)
Q Consensus       400 ~~~  402 (521)
                      .+.
T Consensus       124 ~fp  126 (145)
T d1ujka_         124 GLP  126 (145)
T ss_dssp             HCT
T ss_pred             HCC
Confidence            663

>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: Hrs
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=84.36  E-value=5.9  Score=28.84  Aligned_cols=75  Identities=8%  Similarity=0.070  Sum_probs=54.3

Q ss_pred             HHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCchh----hHHHHHHHHHHhhcC-CChhHHHHHHHHHHHHhhhcChh
Q 009975           96 TELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAH----LKTDIMSIFEDLTQD-DQDSVRLLAVEGCAALGKLLEPQ  170 (521)
Q Consensus        96 ~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~----~~~~l~~~l~~l~~d-~~~~vr~~a~~~l~~l~~~~~~~  170 (521)
                      ++....|.+-+++++|.++..|+..|..+++..|...    ....++..+..+... ....|+..+++++..-+..+..+
T Consensus        41 k~a~ral~krl~~~n~~v~l~aL~LLd~~vkNcG~~f~~~i~s~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~  120 (145)
T d1dvpa1          41 KNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYAFRSS  120 (145)
T ss_dssp             HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHccchHHHHHHhhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCC
Confidence            4555666666788999999999999999998876532    234455666565544 35678999988888888776543

>d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.87  E-value=6.1  Score=28.66  Aligned_cols=73  Identities=8%  Similarity=0.001  Sum_probs=49.4

Q ss_pred             hHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChhhhH----HHHHHHHHHHcCC------CcHHHHHHHHHHHHHHHHH
Q 009975          331 SLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD----DKLGALCMQWLQD------KVYSIRDAAANNLKRLAEE  400 (521)
Q Consensus       331 ~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~----~~l~~~l~~~l~d------~~~~vr~~a~~~l~~l~~~  400 (521)
                      ..+..+..-+.++++.+...++..+..+.+++|..+..    ..++..+..++.+      .+..|+..++..+..+...
T Consensus        38 ~a~ral~krl~~~n~~~~l~aL~LLe~~vkNcG~~fh~evask~Fl~~l~~li~~k~~~~~~~~~Vk~kil~li~~Wa~~  117 (143)
T d1mhqa_          38 HAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVW  117 (143)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence            44555666667777888888888888888888775432    3455556666543      4567888888877777776


Q ss_pred             hCH
Q 009975          401 FGP  403 (521)
Q Consensus       401 ~~~  403 (521)
                      +..
T Consensus       118 f~~  120 (143)
T d1mhqa_         118 FPE  120 (143)
T ss_dssp             CTT
T ss_pred             cCC
Confidence            643

>d1w9ca_ a.118.1.19 (A:) Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Exportin HEAT-like repeat
domain: Exportin-1 (Xpo1, Crm1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.46  E-value=13  Score=31.25  Aligned_cols=119  Identities=17%  Similarity=0.169  Sum_probs=74.7

Q ss_pred             CcHHHHH-HHHHHHHHHHHHhCHHH------HHhhhHHHHHhhhcC---cchHHHHHHHHHHHHhhcccChHH------H
Q 009975          382 KVYSIRD-AAANNLKRLAEEFGPEW------AMQHITPQVLEMINN---PHYLYRMTILRAISLLAPVMGSEI------T  445 (521)
Q Consensus       382 ~~~~vr~-~a~~~l~~l~~~~~~~~------~~~~l~~~l~~~l~~---~~~~~r~~a~~~l~~l~~~~~~~~------~  445 (521)
                      ..++.|. .++.++..++..++...      +.+.++..-.++.++   .-+..|......+..+..++-...      .
T Consensus        85 ~~p~~R~~eVL~l~~~ii~kl~~~~~~~v~~I~~~VFe~Tl~MI~~df~~yPehR~~ff~LL~~i~~~cf~~ll~lp~~q  164 (321)
T d1w9ca_          85 NVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQ  164 (321)
T ss_dssp             SCGGGCCTHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHSSTTTCSHHHHHHHHHHHHHHHHHCTTHHHHSCHHH
T ss_pred             CchhhccHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccchhChHHHHHHHHHHHHHHHHCHHHHHcCCHHH
Confidence            4565663 34566666666665431      223333333445444   458899999999999887554322      2


Q ss_pred             hhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhc------hHHHHhhHHHHHHH---hcCCCC
Q 009975          446 CSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD------QSMVEKTIRPCLVE---LTEDPD  500 (521)
Q Consensus       446 ~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~------~~~~~~~~~~~l~~---l~~D~~  500 (521)
                      ...++..+.-+++++..+|...+++++..+.....      ...+..+..+.+..   ++.|++
T Consensus       165 f~~vidsi~wa~kH~~~~V~~~gL~~l~~ll~n~~~~~~~~~~F~~~y~~~il~~if~vltD~~  228 (321)
T d1w9ca_         165 FKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVAQEEAAAQSFYQTYFCDILQHIFSVVTDTS  228 (321)
T ss_dssp             HHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred             HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHChh
Confidence            35677777778999999999999999988876542      22444555555554   345543