Citrus Sinensis ID: 009978

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-
Protein Sequence
MSSCSLSPYRPIYVHINNKFIGIKSINLQFSSQFPYKSTNRKLFRNVSSNSGSVGLRTIVGCRVRTGVSSNDKSFDLAPNEDEALAPNFLEFITSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYIIFSTGERVNFDEAAL
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccEEcccccccccccEEEEcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccEEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHccccccccccccccccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHcccEEEccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccEEEEEcccEEEEEcccccccccccccccccEEEEcccccccccccEEEEEEEEccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHEHHHHHHccccHHHEEEEHHHHHHHHEEEcccHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHcccccccccccccccccccHHHHHccccHHHHEEHHHHHcHHHHHHHHHcHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEEEHHccHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccc
Coil and Loop (DISEMBL)
msscslspyrpiyvhinNKFIGIKsinlqfssqfpykstnrklfrnvssnsgsvglrTIVGcrvrtgvssndksfdlapnedealapnflefiTSERVKVVSMLALALALCNADRVVMSVAIVPLSlahgwsrsfsgivQSSFlwgylvspiaggtlvdyyGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEgvalpamnnmvarWFPQTERARAVAIAMggftsgnaiGLVLSpilmsqagifgpfVIFGLSGFLWVLVWLSatsstpdrhpqiskYELEYILREkqkpllmgnkhkpatvippfrrllskmptWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDlrqaswfsavpWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIgltaakspvMASAWLTLAIGMKSFSHSGFLVNlqeiapqysgvlhgisnTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYIIFStgervnfdeaal
Flexible Loop (DISEMBL)
msscslspyrPIYVHINNKFIGIKSINLQFSSQFPYKSTNRKLFrnvssnsgsvglrtivgcrvrtgvssndksfdlapnEDEALAPNFLEFITSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSatsstpdrhpqiSKYELEYILREKqkpllmgnkhkpatvippfRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYIIFSTGERVNFDEAAL
Low Complexity Region (SEG)
MSSCSLSPYRPIYVHINNKFIGIKSINLQFSSQFPYKSTNRKLFRNVSSNSGSVGLRTIVGCRVRTGVSSNDKSFDLAPNEDEALAPNFLEFITSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGfllltsllyflsalfyiifSTGERVNFDEAAL
Disordered region (IsUnstruct)
*******PYRPIYVHINNKFIGIKSINLQFSSQFPYKSTNRKLFRNVSSNSGSVGLRTIVGCRVRTGV***************ALAPNFLEFITSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSAT*********ISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYIIFSTGERV*******
Disordered Region (DISOPRED)
******************************************************************************************EFITSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYI********************PPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYIIFSTGERVNFDEA**
Disordered Region (DISEMBL)
MSSCSLSPYRPIYVHINNKFIGIKSINLQFSSQFPYKSTNRKLFRNVSSNSGSVGLRTIVGCRVRTGVSSNDKSFDLAPNEDEALAPNFLEFITSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYIIFSTGERVNFDEAAL
Disordered Region (DISPRO)
******SPYRPIYVHINNKFIGIKSINLQFSSQFPYKSTNRKLFRNVSSNSGSVGLRTIVGCRVRT******************LAPNFLEFITSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQK***********TVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYIIFSTGERVNF*****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSSCSLSPYRPIYVHINNKFIGIKSINLQFSSQFPYKSTNRKLFRNVSSNSGSVGLRTIVGCRVRTGVSSNDKSFDLAPNEDEALAPNFLEFITSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYIIFSTGERVNFDEAAL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	521	2.2.26 [Sep-21-2011]
Q66GI9	533	Probable anion transporte	yes	no	0.930	0.909	0.727	0.0
Q8W0H5	519	Probable anion transporte	yes	no	0.817	0.820	0.718	1e-174
Q7XJR2	512	Probable anion transporte	no	no	0.932	0.949	0.490	1e-136
Q53WP9	535	Probable anion transporte	no	no	0.796	0.775	0.528	1e-123
Q652N5	591	Probable anion transporte	no	no	0.811	0.715	0.400	6e-91
Q8GX78	541	Probable anion transporte	no	no	0.786	0.757	0.398	3e-89
Q9SDI4	529	Probable anion transporte	no	no	0.786	0.775	0.410	2e-86
O82390	512	Sodium-dependent phosphat	no	no	0.833	0.847	0.398	3e-86
Q3E9A0	517	Probable anion transporte	no	no	0.923	0.930	0.288	3e-56
Q2QWW7	439	Probable anion transporte	no	no	0.796	0.945	0.301	3e-51

>sp|Q66GI9|ANTR4_ARATH Probable anion transporter 4, chloroplastic OS=Arabidopsis thaliana GN=ANTR4 PE=2 SV=1

 Score =  697 bits (1800), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/495 (72%), Positives = 416/495 (84%), Gaps = 10/495 (2%)

Query: 34  FPYKSTNRKLF----RNVSS----NSGSVGLRTIVGCRVRTGVSSNDKSFDLAPNEDEAL 85
            P +   RKL     R V+S     + SV L  I   R+R   S   ++ +    E  A 
Sbjct: 41  LPERDRRRKLVLCTGRVVNSLKFTGNTSVDLCGIPRHRLRVSCSDARRTPEETAAELTA- 99

Query: 86  APNFLEFITSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLW 145
            PNF EFITSERVKVV+MLALALALCNADRVVMSVAIVPLSL+ GWS+SFSGIVQSSFLW
Sbjct: 100 QPNFSEFITSERVKVVAMLALALALCNADRVVMSVAIVPLSLSRGWSKSFSGIVQSSFLW 159

Query: 146 GYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGV 205
           GYL+SPIAGGTLVD YGGK++MAWGVALWSLATFLTPWAAD+SL ALLA RA+VG+AEGV
Sbjct: 160 GYLISPIAGGTLVDRYGGKVVMAWGVALWSLATFLTPWAADSSLWALLAARAMVGVAEGV 219

Query: 206 ALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSG 265
           ALP MNNMVARWFP TER+RAV IAM GF  GN +GL+LSPILMSQ GI+GPFVIFGLSG
Sbjct: 220 ALPCMNNMVARWFPPTERSRAVGIAMAGFQLGNVVGLMLSPILMSQGGIYGPFVIFGLSG 279

Query: 266 FLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMP 325
           FLW+LVWLSATSS PDRHPQI+K ELEYI ++K++   M NK    + IPPF RLLSKMP
Sbjct: 280 FLWLLVWLSATSSAPDRHPQITKSELEYI-KQKKQISTMENKRISTSGIPPFGRLLSKMP 338

Query: 326 TWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSD 385
           TW++IVAN+MHSWGFFVILSWMPIYFN VYH++L+QA+WFSAVPWS+MAFTGY+ G  SD
Sbjct: 339 TWAVIVANSMHSWGFFVILSWMPIYFNSVYHVNLKQAAWFSAVPWSMMAFTGYIAGFWSD 398

Query: 386 MLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLV 445
           +LI+RGTS+TLTRKI+QSIGFI PGIALIGLT AK P++ASAWL+LA+G+KSFSH GFL+
Sbjct: 399 LLIRRGTSITLTRKIMQSIGFIGPGIALIGLTTAKQPLVASAWLSLAVGLKSFSHLGFLI 458

Query: 446 NLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFY 505
           NLQEIAP+YSGVLHG+  TAGT AAI+GTVGAGFFVEL+GSFQGF+LLT++LY LSALFY
Sbjct: 459 NLQEIAPEYSGVLHGMCLTAGTLAAIVGTVGAGFFVELLGSFQGFILLTAILYLLSALFY 518

Query: 506 IIFSTGERVNFDEAA 520
            I++TGERV+FD  A
Sbjct: 519 NIYATGERVDFDTTA 533

Inorganic phosphate and probable anion transporter.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8W0H5|PHT43_ORYSJ Probable anion transporter 3, chloroplastic OS=Oryza sativa subsp. japonica GN=PHT4;3 PE=2 SV=1

 Score =  612 bits (1578), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 307/427 (71%), Positives = 368/427 (86%), Gaps = 1/427 (0%)

Query: 91  EFITSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVS 150
           EF+TSERVKV +ML LALALCNADRVVMSVAIVPLS A+GW+ SF+G+VQSSFLWGYLVS
Sbjct: 91  EFVTSERVKVAAMLGLALALCNADRVVMSVAIVPLSQAYGWTPSFAGVVQSSFLWGYLVS 150

Query: 151 PIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAM 210
           PI GG LVDYYGGK +MA+GVALWSLATFL+PWAA  SL   L+ R ++G+AEGVALP+M
Sbjct: 151 PIIGGALVDYYGGKRVMAYGVALWSLATFLSPWAAARSLWLFLSTRVLLGMAEGVALPSM 210

Query: 211 NNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVL 270
           NNMV RWFP+TER+ AV IAM GF  GN IGL+LSPI+MS+AGIFGPFVIFGL GFLWVL
Sbjct: 211 NNMVLRWFPRTERSSAVGIAMAGFQLGNTIGLLLSPIIMSRAGIFGPFVIFGLFGFLWVL 270

Query: 271 VWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSII 330
           VW+SA S TP  + QIS +EL+YI R  QK +   +  +    +PPF +LLSK PTW++I
Sbjct: 271 VWISAISGTPGENAQISAHELDYITR-GQKLVKTQSGGERLRKVPPFSKLLSKWPTWALI 329

Query: 331 VANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQR 390
            ANAMHSWG+FVILSWMP+YF  +YH++LR+A+WFSA+PW +MA  GY+ G++SD LIQ 
Sbjct: 330 SANAMHSWGYFVILSWMPVYFKTIYHVNLREAAWFSALPWVMMAVLGYVAGVVSDRLIQN 389

Query: 391 GTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEI 450
           GTS+TLTRKI+Q+IGF+ PG+AL+GL AAKSPV+ASAWLT+A+G+KSF HSGFLVNLQEI
Sbjct: 390 GTSITLTRKIMQTIGFVGPGVALLGLNAAKSPVIASAWLTIAVGLKSFGHSGFLVNLQEI 449

Query: 451 APQYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYIIFST 510
           APQY+GVLHG+SNTAGTFAAILGTVGAGFFV+ +GSF+GFL+LTSLLYF S LF+ IF+T
Sbjct: 450 APQYAGVLHGMSNTAGTFAAILGTVGAGFFVDRMGSFRGFLILTSLLYFSSTLFWDIFAT 509

Query: 511 GERVNFD 517
           GERV+FD
Sbjct: 510 GERVDFD 516

Probable anion transporter.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q7XJR2|ANTR3_ARATH Probable anion transporter 3, chloroplastic OS=Arabidopsis thaliana GN=ANTR3 PE=2 SV=2

 Score =  486 bits (1251), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 258/526 (49%), Positives = 351/526 (66%), Gaps = 40/526 (7%)

Query: 2   SSCSLS-PYRPI--------YVHINNKFIGIKSINLQFSSQFPYKSTNRKLFRNVSSNSG 52
           SSCS S P  PI        +V  + +   I+  NL++SS+   K       RN ++   
Sbjct: 13  SSCSSSFPRNPIVNRKALLGFVFDSARKNQIRCENLRYSSESDGKR------RNAAAKKR 66

Query: 53  SVGLRTIVGCRVRTGVSSNDKSFDLAPNEDEALAPNFLEFITSERVKVVSMLALALALCN 112
           +          V TG   ++     A  E   + P        ER+KVV + A  + LCN
Sbjct: 67  NQSPERCAAEGVLTGGGGSE-----AIAEVRTMMP--------ERIKVVILTACMMCLCN 113

Query: 113 ADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVA 172
           ADRVVMSVA+VPL+   GWS SF G+VQSSFLWGY+ S + GG LVD YGGK ++AWGVA
Sbjct: 114 ADRVVMSVAVVPLADKLGWSSSFLGVVQSSFLWGYIFSSVIGGALVDRYGGKRVLAWGVA 173

Query: 173 LWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMG 232
           LWSLAT LTPWAA  S LALL +RA  GLAEGVA+P+M  +++RWFP  ERA AV I+M 
Sbjct: 174 LWSLATLLTPWAAAHSTLALLCVRAFFGLAEGVAMPSMTTLLSRWFPMDERASAVGISMA 233

Query: 233 GFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELE 292
           GF  GN +GL+L+P+++S  GI GPF++F   G LWV  W S  ++ P   P I++ EL 
Sbjct: 234 GFHMGNVVGLLLTPLMLSSIGISGPFILFASLGLLWVSTWSSGVTNNPQDSPFITRSELR 293

Query: 293 YILREKQKPLLMGNKHKPATVIPP----FRRLLSKMPTWSIIVANAMHSWGFFVILSWMP 348
            I  +  KP+      +P+T+ P      R LLSK+PTW+II AN  ++WG+FV+LSWMP
Sbjct: 294 LI--QAGKPV------QPSTISPKPNPSLRLLLSKLPTWAIIFANVTNNWGYFVLLSWMP 345

Query: 349 IYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIA 408
           +YF  V++++L+QA+WFSA+PW+ MA +GY  G  SD LI+ G SVT  RKI+QSIGF+ 
Sbjct: 346 VYFQTVFNVNLKQAAWFSALPWATMAISGYYAGAASDFLIRTGHSVTSVRKIMQSIGFMG 405

Query: 409 PGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGISNTAGTF 468
           PG++L+ L  AKSP  A+ ++T+A+ + SFS +GFL+N+Q+IAPQY+G LHGISN AGT 
Sbjct: 406 PGLSLLCLNFAKSPSCAAVFMTIALSLSSFSQAGFLLNMQDIAPQYAGFLHGISNCAGTL 465

Query: 469 AAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYIIFSTGERV 514
           AAI+ T+G G+FV+ +GSFQ FL +T+ LYF + +F+++F+TGERV
Sbjct: 466 AAIVSTIGTGYFVQWLGSFQAFLTVTAFLYFATTVFWLLFATGERV 511

Inorganic phosphate and probable anion transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q53WP9|PHT42_ORYSJ Probable anion transporter 2, chloroplastic OS=Oryza sativa subsp. japonica GN=PHT4;2 PE=2 SV=1

 Score =  442 bits (1138), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 223/422 (52%), Positives = 303/422 (71%), Gaps = 7/422 (1%)

Query: 96  ERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGG 155
           ER KVV+++A  + LCNADRVVMSVA+VP +  +GWS SF GIVQSSFLWGY+ S + GG
Sbjct: 121 ERAKVVALVAAVMLLCNADRVVMSVAVVPFAAQYGWSSSFLGIVQSSFLWGYVFSSMVGG 180

Query: 156 TLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVA 215
            L D YGGK +MA   ALWSLATFLTPWAA  S + LLA+RA+ GLAEGVA P M+  + 
Sbjct: 181 ALADRYGGKKVMAGAAALWSLATFLTPWAASQSTIMLLAIRALFGLAEGVAFPTMSTFLP 240

Query: 216 RWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSA 275
           +WFP  ERA AV I+MGGF  GN I  + +PI+MS  G+ G F  F   G+LW+ VWL  
Sbjct: 241 KWFPTHERATAVGISMGGFHLGNVISFLATPIIMSHIGLAGTFAFFASLGYLWLSVWLFN 300

Query: 276 TSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAM 335
             S P     ISK EL+ IL  +    + G+K       P  R +LSK+  W+IIVAN +
Sbjct: 301 VESDPLDSRTISKSELQLILAGRSASKIQGSK------FPSLREILSKIEMWAIIVANVV 354

Query: 336 HSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVT 395
           ++WG+FV+LSWMP+YF  VY+++L+QA+WFSA+PW+VMA +GY+ G  +D LI+ G SV 
Sbjct: 355 NNWGYFVLLSWMPVYFKTVYNVNLKQAAWFSAIPWAVMALSGYVAGASADFLIKSGFSVA 414

Query: 396 LTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYS 455
           L RKI+QSIGFI PG++L+ L  A++P +A+  +T+A+ + SFS +G+  N+Q+IAP+Y+
Sbjct: 415 LVRKIMQSIGFIGPGVSLLCLRFAQTPSVAAVLMTIALSLSSFSQAGYFCNVQDIAPKYA 474

Query: 456 GVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYIIFSTGERVN 515
           G LHG++N  GT AAI+ T+G G+FV+ +GSFQ FL LT++LYF + +FY  ++TG+ + 
Sbjct: 475 GSLHGLTNGIGTVAAIVSTIGTGYFVQWLGSFQAFLTLTAVLYFSATVFYNTYATGDLI- 533

Query: 516 FD 517
           FD
Sbjct: 534 FD 535

Probable anion transporter.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q652N5|PHT44_ORYSJ Probable anion transporter 4, chloroplastic OS=Oryza sativa subsp. japonica GN=PHT4;4 PE=2 SV=1

 Score =  335 bits (858), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 174/434 (40%), Positives = 264/434 (60%), Gaps = 11/434 (2%)

Query: 81  EDEALAPNFLEFITSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQ 140
           +   ++P + +F   +R  VV +   +  LCN DRV MS+AI+P+S   GWS +  G++Q
Sbjct: 167 DTNEISPWWQQF--PKRWTVVLLCFFSFLLCNMDRVNMSIAILPMSSEFGWSPATVGLIQ 224

Query: 141 SSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVG 200
           SSF WGYL++ I GG   D +GGK+++ +GV  WS+AT LTP AA   L  LL MRA +G
Sbjct: 225 SSFFWGYLLTQILGGIWADRFGGKVVLGFGVVWWSIATVLTPLAAKIGLPFLLVMRAFMG 284

Query: 201 LAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVI 260
           + EGVA+PAMNN++++W P +ER+R++A+   G   G+  GL  SP+L+S+ G    F  
Sbjct: 285 IGEGVAMPAMNNILSKWVPVSERSRSLALVYSGMYLGSVTGLAFSPLLISRFGWPSVFYA 344

Query: 261 FGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRL 320
           FG  G +W  +W     S+P   P++SK E  YIL         G+  K      P++ +
Sbjct: 345 FGSLGSVWFALWQRKAHSSPSEDPELSKAEKRYILG--------GSTLKEPVTSIPWKLI 396

Query: 321 LSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLG 380
           LSK P W++IV++  H+WG F++L+WMP Y+N V   +L ++     +PW  MA    +G
Sbjct: 397 LSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLLCVLPWLTMAIFANIG 456

Query: 381 GLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSH 440
           G ++D L+ RG S+T  RKI+QSIGF+ P + L  L+  ++P MA   +  + G  +FS 
Sbjct: 457 GWIADTLVGRGVSITNVRKIMQSIGFLGPALFLTLLSKVRTPAMAVLCMACSQGSDAFSQ 516

Query: 441 SGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFL 500
           SG   N Q+I P+Y+GVL G+SNTAG  A + GT   G+ ++  GS+     +  +LY +
Sbjct: 517 SGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQ-KGSWDSVFQVAVVLYIV 575

Query: 501 SALFYIIFSTGERV 514
             + + +FSTGE+V
Sbjct: 576 GTVVWNVFSTGEKV 589

Probable anion transporter.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8GX78|ANTR2_ARATH Probable anion transporter 2, chloroplastic OS=Arabidopsis thaliana GN=ANTR2 PE=2 SV=1

 Score =  329 bits (844), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 167/419 (39%), Positives = 258/419 (61%), Gaps = 9/419 (2%)

Query: 96  ERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGG 155
            R  +V +   +  LCN DRV MS+AI+P+S  + WS +  G++QSSF WGYL++ I GG
Sbjct: 130 RRWVIVLLCFSSFLLCNMDRVNMSIAILPMSQEYNWSSATVGLIQSSFFWGYLLTQILGG 189

Query: 156 TLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVA 215
              D +GGK+++ +GV  WS AT +TP AA   L  LL +RA +G+ EGVA+PAMNNM++
Sbjct: 190 IWADKFGGKVVLGFGVVWWSFATIMTPIAARLGLPFLLVVRAFMGIGEGVAMPAMNNMLS 249

Query: 216 RWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSA 275
           +W P +ER+R++A+   G   G+  GL  SP+L+++ G    F  FG  G +W L+WL  
Sbjct: 250 KWIPVSERSRSLALVYSGMYLGSVTGLAFSPMLITKFGWPSVFYSFGSLGSIWFLLWLKF 309

Query: 276 TSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAM 335
             S+P   P +S+        E++K +L G+K +    + P++ +LSK P W++I+++  
Sbjct: 310 AYSSPKDDPDLSE--------EEKKVILGGSKPREPVTVIPWKLILSKPPVWALIISHFC 361

Query: 336 HSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVT 395
           H+WG F++L+WMP Y+N V   +L ++     +PW  MA    +GG ++D L+ RG S+T
Sbjct: 362 HNWGTFILLTWMPTYYNQVLKFNLTESGLLCVLPWLTMAVFANIGGWIADTLVSRGLSIT 421

Query: 396 LTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYS 455
             RKI+QSIGF+ P   L  L+  K+P MA   +  + G  +FS SG   N Q+I P+Y+
Sbjct: 422 NVRKIMQSIGFLGPAFFLSQLSHVKTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYA 481

Query: 456 GVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYIIFSTGERV 514
           GVL G+SNTAG  A + GT   G+ ++  GS+     +   LY +  L + +F+TGE++
Sbjct: 482 GVLLGLSNTAGVLAGVFGTAATGYILQR-GSWDDVFKVAVALYLIGTLVWNLFATGEKI 539

Inorganic phosphate and probable anion transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SDI4|PHT41_ORYSJ Probable anion transporter 1, chloroplastic OS=Oryza sativa subsp. japonica GN=PHT4;1 PE=2 SV=1

 Score =  320 bits (819), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 172/419 (41%), Positives = 249/419 (59%), Gaps = 9/419 (2%)

Query: 96  ERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGG 155
           +R  +V +   A  LCN DRV MS+AI+P+S   GW+    G++QSSF WGYL++ IAGG
Sbjct: 118 KRWAIVFLCFSAFLLCNMDRVNMSIAILPMSAEFGWNPQTVGLIQSSFFWGYLLTQIAGG 177

Query: 156 TLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVA 215
              D  GGK ++ +GV  WS+AT LTP+AA   L  LL  RA +G+ EGVA+PAMNN+++
Sbjct: 178 IWADTVGGKTVLGFGVIWWSIATALTPFAAKLGLPFLLVTRAFMGVGEGVAMPAMNNILS 237

Query: 216 RWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSA 275
           +W P +ER+R++A+   G   G+  GL  SP+L+   G    F  FG  G  W   W S 
Sbjct: 238 KWVPVSERSRSLALVYSGMYLGSVTGLAFSPLLIHNFGWPSVFYSFGSLGVFWFSTWASK 297

Query: 276 TSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAM 335
             S+P   P IS  E + I  +           +P   I P+  +LSK P W++IV++  
Sbjct: 298 AYSSPLEDPGISAEEKKLITSQT-------TGGEPVKEI-PWGLILSKPPVWALIVSHFC 349

Query: 336 HSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVT 395
           H+WG F++L+WMP Y+N V   +L ++  F  +PW  MA +   GG ++D L+ RG SVT
Sbjct: 350 HNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVSANFGGWIADTLVSRGLSVT 409

Query: 396 LTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYS 455
             RKI+QSIGF+ P   L  L+   SP MA   +  + G  +FS SG   N Q+I P+Y+
Sbjct: 410 TVRKIMQSIGFLGPAFFLTQLSHIDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIGPRYA 469

Query: 456 GVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYIIFSTGERV 514
           GVL G+SNTAG  A + GT   G+ ++  GS+     ++ +LY +  L + +FSTGE++
Sbjct: 470 GVLLGLSNTAGVLAGVFGTAATGYILQH-GSWDDVFKVSVVLYLVGTLVWNLFSTGEKI 527

Probable anion transporter.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|O82390|ANTR1_ARATH Sodium-dependent phosphate transport protein 1, chloroplastic OS=Arabidopsis thaliana GN=ANTR1 PE=1 SV=1

 Score =  319 bits (818), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 178/447 (39%), Positives = 262/447 (58%), Gaps = 13/447 (2%)

Query: 68  VSSNDKSFDLAPNEDEALAPNFLEFITSERVKVVSMLALALALCNADRVVMSVAIVPLSL 127
           VS N+     +P+    + P + EF   +R  +V +   A  LCN DRV MS+AI+P+S 
Sbjct: 77  VSGNNDVVSDSPSS--IVLPWWEEF--PKRWVIVLLCFSAFLLCNMDRVNMSIAILPMSA 132

Query: 128 AHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADT 187
            +GW+ +  G++QSSF WGYL++ IAGG   D  GGK ++ +GV  WS+AT LTP AA  
Sbjct: 133 EYGWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKRVLGFGVIWWSIATILTPVAAKL 192

Query: 188 SLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPI 247
            L  LL +RA +G+ EGVA+PAMNN++++W P  ER+R++A+   G   G+  GL  SP 
Sbjct: 193 GLPYLLVVRAFMGVGEGVAMPAMNNILSKWVPVQERSRSLALVYSGMYLGSVTGLAFSPF 252

Query: 248 LMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNK 307
           L+ Q G    F  FG  G +W+ +WL+   S+P   P         +L E++K +     
Sbjct: 253 LIHQFGWPSVFYSFGSLGTVWLTLWLTKAESSPLEDPT--------LLPEERKLIADNCA 304

Query: 308 HKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSA 367
            K      P+R +LSK P W++I  +  H+WG F++L+WMP Y++ V   +L ++   S 
Sbjct: 305 SKEPVKSIPWRLILSKPPVWALISCHFCHNWGTFILLTWMPTYYHQVLKFNLMESGLLSV 364

Query: 368 VPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASA 427
            PW  MA +   GG ++D L+ RG SVT  RKI+Q+IGF+ P   L  L    SP MA  
Sbjct: 365 FPWMTMAISANAGGWIADTLVSRGFSVTNVRKIMQTIGFLGPAFFLTQLKHIDSPTMAVL 424

Query: 428 WLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSF 487
            +  + G  +FS SG   N Q+IAP+YSGVL G+SNTAG  A +LGT   G  ++  GS+
Sbjct: 425 CMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVLGTAATGHILQH-GSW 483

Query: 488 QGFLLLTSLLYFLSALFYIIFSTGERV 514
                ++  LY +  + + +FSTGE++
Sbjct: 484 DDVFTISVGLYLVGTVIWNLFSTGEKI 510

Specific for inorganic phosphate transport across the thylakoid membrane in a sodium dependent manner. Binds glutamate but cannot transport it.

Arabidopsis thaliana (taxid: 3702)

>sp|Q3E9A0|ANTR6_ARATH Probable anion transporter 6, chloroplastic OS=Arabidopsis thaliana GN=ANTR6 PE=2 SV=1

 Score =  219 bits (559), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 159/551 (28%), Positives = 253/551 (45%), Gaps = 70/551 (12%)

Query: 1   MSSCSLSPYR-----PIYVHINNKFIGIKSINLQFSSQFPYKSTNRKLFRNVSSNSGSVG 55
           M+  +L P+      PIY H    F+ + +I       FP+   N  +   V  ++    
Sbjct: 1   MARLTLRPHNHFFSSPIYAH-KQPFLSVYTI-------FPHHHQNPLIKSRVKCSASGTE 52

Query: 56  LRTIVGCRVRTGVSSNDKSFDLAPNEDEALAPNFLEFITSE---------------RVKV 100
                  RVR       K     P ED        E +++E               R K+
Sbjct: 53  -------RVRESKKLPPKD----PIEDPKPQLPIPEVLSTETGFEQNWPPWKNIPQRYKL 101

Query: 101 VSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDY 160
           +   +LA  +CN D+V +S+AI+P+S   GWS S +G+VQSSF WGY +S + GG L   
Sbjct: 102 IGATSLAFVICNMDKVNLSIAIIPMSHQFGWSSSVAGLVQSSFFWGYALSQLPGGWLSKI 161

Query: 161 YGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQ 220
           +GG+ ++  GV  WS AT L P  A   +  L+  R +VG+ EGV+  A  +++AR  P 
Sbjct: 162 FGGRKVLEIGVFTWSFATALVPLLAGF-MPGLIFSRILVGIGEGVSPSAATDLIARTIPV 220

Query: 221 TERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWV----------L 270
            ER+RAV    GG + G+ +GL+L+P ++        F +FGL G  W           +
Sbjct: 221 KERSRAVGFVFGGLSLGSVMGLLLAPPIIETFNWESVFYLFGLLGVGWFVGFQFLNEEEV 280

Query: 271 VWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSII 330
            +     ST  +    +K EL   L+E                  P++        W++I
Sbjct: 281 SYKGNEISTSHKSENATKEELGSSLKEI-----------------PWKSFFQSPAVWAMI 323

Query: 331 VANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQR 390
             +   SWG +  LSW+P YF+    ++L +A+W S +P         L    +D LI  
Sbjct: 324 YTHFCGSWGHYTCLSWLPTYFSEALSLNLTEAAWVSILPPLASIVVTSLASQFADYLITN 383

Query: 391 GTSVTLTRKILQSIGFIAPGIALI--GLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQ 448
           G   T  RKI Q+I F+AP I +    +     P      LT  + + SF+ SG     Q
Sbjct: 384 GVDTTTVRKICQTIAFVAPAICMTLSSVDIGLPPWEIVGILTAGLALSSFALSGLYCTHQ 443

Query: 449 EIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSA-LFYII 507
           +I+P+Y+ +L GI+NT G    I+G    GF ++   S+   L + S+ ++L+  + ++ 
Sbjct: 444 DISPEYASILLGITNTVGAVPGIVGVALTGFLLDSTHSWTMSLFVPSIFFYLTGTVVWLA 503

Query: 508 FSTGERVNFDE 518
           F++ E   F +
Sbjct: 504 FASSEPQTFRK 514

Inorganic phosphate and probable anion transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q2QWW7|PHT47_ORYSJ Probable anion transporter 7 OS=Oryza sativa subsp. japonica GN=PHT4;7 PE=2 SV=1

 Score =  203 bits (516), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 130/431 (30%), Positives = 229/431 (53%), Gaps = 16/431 (3%)

Query: 96  ERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGG 155
           +R  +V +  +   +C  +RV  S+A    + A G +++  G++ S F +GY++S I GG
Sbjct: 11  KRYVIVLLTFICTNVCYIERVGFSIAYTVAADAIGVNQANKGMILSMFYYGYVLSQIPGG 70

Query: 156 TLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVA 215
                 GG+ ++     LWSL   L P      ++ +L+ R  VG+A+G   PA++ ++A
Sbjct: 71  WAAQRIGGRRVLLLSFVLWSLICGLIPLDPKREVILVLS-RLFVGVAQGFIFPAIHTVLA 129

Query: 216 RWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSA 275
           +W P  ER+R+V++   G   G A G++  P L+   G    F +  + G  W ++WL  
Sbjct: 130 QWVPPQERSRSVSLTTSGMYLGAAGGMLFFPSLVKHMGAQSVFFVEAVLGVAWSVIWLKF 189

Query: 276 TSSTPDRH-PQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANA 334
           +S  P    P++S  ++    REK K    G    P TV  P+RR++  +P W+I+V N 
Sbjct: 190 SSEPPRTDLPKVSMPKVAS--REKIKAQ-AGGVVAPRTVKIPWRRIIFSLPVWAIVVNNF 246

Query: 335 MHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGT-S 393
              +  +V+++W+P YF     + L+       +P+  M     +GG+++D LI R   S
Sbjct: 247 TFHYALYVLMNWLPTYFELGLQLSLQDMGSSKMLPYFNMFIFSNIGGVVADHLITRRILS 306

Query: 394 VTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQ 453
           +T TRK+L +IGF+   +AL+ L   ++P       ++++G  +   +GF VN  ++AP+
Sbjct: 307 ITKTRKLLNTIGFVVSAVALMALPLFRTPSGTVLCSSISLGFLALGRAGFAVNHMDVAPK 366

Query: 454 YSGVLHGISNTAGTFAAILGTVGAGFFVE--------LVGS--FQGFLLLTSLLYFLSAL 503
           ++G++ G+SNTAGT A I+G    G  +E        L  S  ++    +   L   S++
Sbjct: 367 FAGIVMGVSNTAGTLAGIVGVGLTGSILEGAKASNMDLTNSETWKTVFFVPGYLCIFSSI 426

Query: 504 FYIIFSTGERV 514
            ++IFSTGE++
Sbjct: 427 IFLIFSTGEKI 437

Probable anion transporter.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	521
224054570	550	predicted protein [Populus trichocarpa]	0.894	0.847	0.807	0.0
225434688	525	PREDICTED: probable anion transporter 4,	0.925	0.918	0.755	0.0
449470650	530	PREDICTED: probable anion transporter 4,	0.907	0.892	0.767	0.0
449455040	530	PREDICTED: probable anion transporter 4,	0.907	0.892	0.765	0.0
297819304	533	hypothetical protein ARALYDRAFT_485075 [	0.973	0.951	0.698	0.0
17064732	533	putative protein [Arabidopsis thaliana]	0.930	0.909	0.727	0.0
22331630	533	putative anion transporter 4 [Arabidopsi	0.930	0.909	0.727	0.0
79314547	534	putative anion transporter 4 [Arabidopsi	0.930	0.908	0.727	0.0
255558820	554	Sialin, putative [Ricinus communis] gi|2	0.927	0.871	0.723	0.0
356553048	515	PREDICTED: probable anion transporter 4,	0.909	0.920	0.75	0.0

>gi|224054570|ref|XP_002298326.1| predicted protein [Populus trichocarpa] gi|222845584|gb|EEE83131.1| predicted protein [Populus trichocarpa]

 Score =  726 bits (1874), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/468 (80%), Positives = 413/468 (88%), Gaps = 2/468 (0%)

Query: 51  SGSVGLRTIVGCRVRTGVSSNDKSFDLAPNEDEALAPNFLEFITSERVKVVSMLALALAL 110
           +GSV  RT+   RVR  VSSND  F     + E  AP+F EFITSER+KVVSMLALALAL
Sbjct: 60  NGSVEFRTVPSLRVR--VSSNDAQFGSLNEDCEPKAPSFREFITSERIKVVSMLALALAL 117

Query: 111 CNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWG 170
           CNADRVVMSVAIVPLSLAHGWSRSFSG+VQSSFLWGYL+SPIAGGTLVDYYGGK++M WG
Sbjct: 118 CNADRVVMSVAIVPLSLAHGWSRSFSGVVQSSFLWGYLISPIAGGTLVDYYGGKVVMGWG 177

Query: 171 VALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIA 230
           VALWSLATFLTPWAADTSL ALLA RA++G+AEGVALP MNNM+ARWFPQTERARAV IA
Sbjct: 178 VALWSLATFLTPWAADTSLWALLATRAMLGIAEGVALPCMNNMIARWFPQTERARAVGIA 237

Query: 231 MGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYE 290
           M GF  GNAIGL+LSPILMS+ GIFGPFVIFGLSGFLWVLVWLSA SSTPDR  QISKYE
Sbjct: 238 MAGFQFGNAIGLMLSPILMSKGGIFGPFVIFGLSGFLWVLVWLSAISSTPDRSSQISKYE 297

Query: 291 LEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIY 350
           LEYIL +  K   M NK K   +IPPFRRLLSKMPTWS+I+ANAMHSWGFFVILSWMPIY
Sbjct: 298 LEYILNKGWKSFPMENKPKTNRIIPPFRRLLSKMPTWSLIIANAMHSWGFFVILSWMPIY 357

Query: 351 FNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPG 410
           FN +YH+DL+QA+WFSAVPWSVM F GY GG  SDMLI+ G SVTLTRKI+QSIGF  PG
Sbjct: 358 FNTIYHVDLKQAAWFSAVPWSVMGFMGYFGGTWSDMLIRSGISVTLTRKIMQSIGFFGPG 417

Query: 411 IALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGISNTAGTFAA 470
           IALIGLT A++P +ASAWLT+A+G+KSFSHSGFLVNLQEIAP+YSGVLHGISNTAGT AA
Sbjct: 418 IALIGLTTARNPFLASAWLTIAVGLKSFSHSGFLVNLQEIAPRYSGVLHGISNTAGTLAA 477

Query: 471 ILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYIIFSTGERVNFDE 518
           I+GTVGAGFFVELVGSF+GFLLLTSLLYFL+ALFY IFSTGERVNFDE
Sbjct: 478 IVGTVGAGFFVELVGSFRGFLLLTSLLYFLAALFYNIFSTGERVNFDE 525

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225434688|ref|XP_002279865.1| PREDICTED: probable anion transporter 4, chloroplastic [Vitis vinifera]

 Score =  719 bits (1855), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/494 (75%), Positives = 420/494 (85%), Gaps = 12/494 (2%)

Query: 34  FPYK---STNRKLFRNVSSNSGSVGLR-----TIVGCRVRTGVSSNDKSFDLAP--NEDE 83
           FP++   ST +  FR VSS + S+ LR        G R R      D SF       E E
Sbjct: 34  FPFRLIESTKQNSFRIVSSAT-SLRLRLRYDSVERGLRARVSSDGGD-SFTGGELQEEKE 91

Query: 84  ALAPNFLEFITSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSF 143
             AP+F+EFITSERVKVV+MLALALALCNADRVVMSVAIVPLSL+HGWSRSF G+VQSSF
Sbjct: 92  LQAPSFVEFITSERVKVVAMLALALALCNADRVVMSVAIVPLSLSHGWSRSFGGVVQSSF 151

Query: 144 LWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAE 203
           LWGYL+SPIAGG LVDYYGGK++MAWGVALWSLATFLTPWAA+TS+ ALL MRA++G+AE
Sbjct: 152 LWGYLISPIAGGALVDYYGGKVVMAWGVALWSLATFLTPWAAETSIWALLTMRALLGVAE 211

Query: 204 GVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGL 263
           GVALP MNNMVARWFPQTER+RAV IAM GF  G+AIGL L+PILMSQ GIFGPFVIFGL
Sbjct: 212 GVALPCMNNMVARWFPQTERSRAVGIAMAGFQLGSAIGLTLAPILMSQGGIFGPFVIFGL 271

Query: 264 SGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSK 323
           SGFLWVLVW+SATSSTPD++PQISK EL+YIL   +K   + N+ K   VIPPFRRLLSK
Sbjct: 272 SGFLWVLVWISATSSTPDQNPQISKSELDYILNNGRKSFRVENQAKRTKVIPPFRRLLSK 331

Query: 324 MPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLL 383
            PTWS+IVANAMHSWGFFVILSWMPIYFN ++ +DL QA+WFSAVPWS+MA  GY GG  
Sbjct: 332 PPTWSLIVANAMHSWGFFVILSWMPIYFNTIHRVDLTQAAWFSAVPWSMMAIVGYFGGAW 391

Query: 384 SDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGF 443
           SD+LIQRG SVT+TRKI+QSIGF+ PGIALIGLTAAKSP++ASAWLTLA+G+KSFSHSGF
Sbjct: 392 SDILIQRGLSVTMTRKIMQSIGFVGPGIALIGLTAAKSPLIASAWLTLAVGLKSFSHSGF 451

Query: 444 LVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSAL 503
           LVNLQEIAPQYSGVLHG+SNTAGTFAAI+GT+GAGFFVELVGSFQGFLLLTS LY LSAL
Sbjct: 452 LVNLQEIAPQYSGVLHGLSNTAGTFAAIVGTIGAGFFVELVGSFQGFLLLTSFLYILSAL 511

Query: 504 FYIIFSTGERVNFD 517
           F+ IF+TGERVNFD
Sbjct: 512 FFDIFATGERVNFD 525

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449470650|ref|XP_004153029.1| PREDICTED: probable anion transporter 4, chloroplastic-like [Cucumis sativus] gi|449474939|ref|XP_004154326.1| PREDICTED: probable anion transporter 4, chloroplastic-like [Cucumis sativus] gi|449510734|ref|XP_004163745.1| PREDICTED: probable anion transporter 4, chloroplastic-like [Cucumis sativus]

 Score =  715 bits (1845), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/486 (76%), Positives = 419/486 (86%), Gaps = 13/486 (2%)

Query: 45  RNVSSNSGSVGLRTIVGCR------------VRTGVSSNDKSFDLAPNEDEALAPNFLEF 92
           RN + +  S G   + G R             R GVSSND  F     + +  +P+F EF
Sbjct: 44  RNCTGSLSSAGYFPVFGLRNGSSSDSGFVLPSRIGVSSNDAQFGSFAEDKDMESPSFFEF 103

Query: 93  ITSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPI 152
           ITSERVKVV+MLALALALCNADRVVMSVAIVPLSL++GWSRSF+GIVQSSFLWGY VSPI
Sbjct: 104 ITSERVKVVAMLALALALCNADRVVMSVAIVPLSLSNGWSRSFAGIVQSSFLWGYFVSPI 163

Query: 153 AGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNN 212
           AGG LVDYYGGK++M WGVALWSLATFLTPWAA+TSL ALLAMRA++G+AEGVALP MNN
Sbjct: 164 AGGALVDYYGGKMVMGWGVALWSLATFLTPWAAETSLWALLAMRALLGIAEGVALPCMNN 223

Query: 213 MVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVW 272
           MVARWFP TERARAV IAM GF  G+AIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVW
Sbjct: 224 MVARWFPPTERARAVGIAMAGFQLGSAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVW 283

Query: 273 LSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVA 332
           LSA SSTPDR+ QISKYELEY+L ++Q+P ++ N  K  TVIPPF+RLLSKMPTWS+I+A
Sbjct: 284 LSAISSTPDRNLQISKYELEYVLSKRQQPSVVENVPK-KTVIPPFKRLLSKMPTWSLIIA 342

Query: 333 NAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGT 392
           NAMHSWGFFVILSWMPIYFN VYH+DLRQA+WFSAVPW+VMA  GY+GGL SD LI+ GT
Sbjct: 343 NAMHSWGFFVILSWMPIYFNSVYHVDLRQAAWFSAVPWAVMALMGYVGGLWSDGLIKSGT 402

Query: 393 SVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP 452
           SVTLTRKI+QSIGFI PGIALIGLT+A+S  +ASAWLTLA+G+KSFSHSGFLVNLQEIAP
Sbjct: 403 SVTLTRKIMQSIGFIGPGIALIGLTSARSASLASAWLTLAVGLKSFSHSGFLVNLQEIAP 462

Query: 453 QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYIIFSTGE 512
           QYSGVLHG+SNTAGT AAI+GTVG GFFVE+VGSFQGFLLLTS LYF +A+FYIIFSTG+
Sbjct: 463 QYSGVLHGMSNTAGTLAAIVGTVGVGFFVEIVGSFQGFLLLTSALYFTAAIFYIIFSTGK 522

Query: 513 RVNFDE 518
           RVNF+E
Sbjct: 523 RVNFEE 528

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449455040|ref|XP_004145261.1| PREDICTED: probable anion transporter 4, chloroplastic-like [Cucumis sativus]

 Score =  711 bits (1834), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/486 (76%), Positives = 418/486 (86%), Gaps = 13/486 (2%)

Query: 45  RNVSSNSGSVGLRTIVGCR------------VRTGVSSNDKSFDLAPNEDEALAPNFLEF 92
           RN + +  S G   + G R             R GVSSND  F     + +  +P+F EF
Sbjct: 44  RNCTGSLSSAGYFPVFGLRNGSSSDSGFVLPSRIGVSSNDAQFGSFAEDKDMESPSFFEF 103

Query: 93  ITSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPI 152
           ITSERVKVV+MLALALALCNADRVVMSVAIVPLSL++GWSRSF+GIVQSSFLWGY VSPI
Sbjct: 104 ITSERVKVVAMLALALALCNADRVVMSVAIVPLSLSNGWSRSFAGIVQSSFLWGYFVSPI 163

Query: 153 AGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNN 212
           AGG LVDYYGGK++M WGVALWSLATFLTPWAA+TSL ALLAMRA++G+AEGVALP MNN
Sbjct: 164 AGGALVDYYGGKMVMGWGVALWSLATFLTPWAAETSLWALLAMRALLGIAEGVALPCMNN 223

Query: 213 MVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVW 272
           MVARWFP TERARAV IAM GF  G+AIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVW
Sbjct: 224 MVARWFPPTERARAVGIAMAGFQLGSAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVW 283

Query: 273 LSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVA 332
           LSA SSTPDR+ QISKYELEY+L ++Q+P ++ N  K  TVIPPF+RLLSKMPTWS+I+A
Sbjct: 284 LSAISSTPDRNLQISKYELEYVLSKRQQPSVVENVPK-KTVIPPFKRLLSKMPTWSLIIA 342

Query: 333 NAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGT 392
           NAMHSWGFFVILSWMPIYFN VYH+DLRQA+WFSAVPW+VMA  GY+GGL SD LI+ GT
Sbjct: 343 NAMHSWGFFVILSWMPIYFNSVYHVDLRQAAWFSAVPWAVMALMGYVGGLWSDGLIKSGT 402

Query: 393 SVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP 452
           SVTLTRKI+QSIGFI PGIALIGLT+A+S  +ASAWLTLA+ +KSFSHSGFLVNLQEIAP
Sbjct: 403 SVTLTRKIMQSIGFIGPGIALIGLTSARSASLASAWLTLAVWLKSFSHSGFLVNLQEIAP 462

Query: 453 QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYIIFSTGE 512
           QYSGVLHG+SNTAGT AAI+GTVG GFFVE+VGSFQGFLLLTS LYF +A+FYIIFSTG+
Sbjct: 463 QYSGVLHGMSNTAGTLAAIVGTVGVGFFVEIVGSFQGFLLLTSALYFTAAIFYIIFSTGK 522

Query: 513 RVNFDE 518
           RVNF+E
Sbjct: 523 RVNFEE 528

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297819304|ref|XP_002877535.1| hypothetical protein ARALYDRAFT_485075 [Arabidopsis lyrata subsp. lyrata] gi|297323373|gb|EFH53794.1| hypothetical protein ARALYDRAFT_485075 [Arabidopsis lyrata subsp. lyrata]

 Score =  699 bits (1805), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/517 (69%), Positives = 421/517 (81%), Gaps = 10/517 (1%)

Query: 12  IYVHINNKFIGIKSINLQFSSQFPYKSTNRKLF----RNVSS----NSGSVGLRTIVGCR 63
           + +H +   +      L+     P +   RKL     R+V S     + +V L  I   R
Sbjct: 19  LKIHGDRAILDSNLPTLRRIPSLPERDRRRKLLLCSGRSVGSLRFTGNTAVHLCGIPRHR 78

Query: 64  VRTGVSSNDKSFDLAPNEDEALAPNFLEFITSERVKVVSMLALALALCNADRVVMSVAIV 123
           +R   S   +S +    E  A  PNF EFITSERVKVV+MLALALALCNADRVVMSVAIV
Sbjct: 79  LRVSCSDARRSPEETAAEMTA-QPNFSEFITSERVKVVAMLALALALCNADRVVMSVAIV 137

Query: 124 PLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPW 183
           PLSL+ GWS+SFSGIVQSSFLWGYL+SPIAGGTLVD YGGK++MAWGVALWSLATFLTPW
Sbjct: 138 PLSLSRGWSKSFSGIVQSSFLWGYLISPIAGGTLVDRYGGKVVMAWGVALWSLATFLTPW 197

Query: 184 AADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLV 243
           AAD+SL ALLA RA+VG+AEGVALP MNNMVARWFP TER+RAV IAM GF  GN +GL+
Sbjct: 198 AADSSLWALLAARAMVGVAEGVALPCMNNMVARWFPSTERSRAVGIAMAGFQLGNVVGLM 257

Query: 244 LSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLL 303
           LSPILMSQ GI+GPFVIFGLSGFLW+LVWLSATSS PDRHPQI+K ELEYI ++KQ+P  
Sbjct: 258 LSPILMSQGGIYGPFVIFGLSGFLWLLVWLSATSSAPDRHPQITKSELEYI-KQKQQPST 316

Query: 304 MGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQAS 363
             NK      IPPF RLLSKMPTW++IVAN+MHSWGFFVILSWMPIYFN VYH++L+QA+
Sbjct: 317 GENKRNTTGGIPPFGRLLSKMPTWAVIVANSMHSWGFFVILSWMPIYFNSVYHVNLKQAA 376

Query: 364 WFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPV 423
           WFSAVPWS+MAFTGY+ G  SD+LI+RGTS+TLTRKI+QSIGFI PGI+LIGLT AK P+
Sbjct: 377 WFSAVPWSMMAFTGYIAGFWSDLLIRRGTSITLTRKIMQSIGFIGPGISLIGLTTAKQPL 436

Query: 424 MASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVEL 483
           +ASAWL+LA+G+KSFSH GFL+NLQEIAP+YSGVLHG+  TAGT AAI+GTVG GFFVEL
Sbjct: 437 VASAWLSLAVGLKSFSHLGFLINLQEIAPEYSGVLHGMCLTAGTLAAIVGTVGTGFFVEL 496

Query: 484 VGSFQGFLLLTSLLYFLSALFYIIFSTGERVNFDEAA 520
           +GSFQGF+LLT++LY LSALFY I++TGERV+FD  A
Sbjct: 497 LGSFQGFILLTAILYLLSALFYNIYATGERVDFDTTA 533

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|17064732|gb|AAL32520.1| putative protein [Arabidopsis thaliana]

 Score =  698 bits (1801), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/495 (72%), Positives = 416/495 (84%), Gaps = 10/495 (2%)

Query: 34  FPYKSTNRKLF----RNVSS----NSGSVGLRTIVGCRVRTGVSSNDKSFDLAPNEDEAL 85
            P +   RKL     R V+S     + SV L  I   R+R   S   ++ +    E  A 
Sbjct: 41  LPERDRRRKLVLCTGRVVNSLKFTGNTSVDLCGIPRHRLRVSCSDARRTPEETAAELTA- 99

Query: 86  APNFLEFITSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLW 145
            PNF EFITSERVKVV+MLALALALCNADRVVMSVAIVPLSL+ GWS+SFSGIVQSSFLW
Sbjct: 100 QPNFSEFITSERVKVVAMLALALALCNADRVVMSVAIVPLSLSRGWSKSFSGIVQSSFLW 159

Query: 146 GYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGV 205
           GYL+SPIAGGTLVD YGGK++MAWGVALWSLATFLTPWAAD+SL ALLA RA+VG+AEGV
Sbjct: 160 GYLISPIAGGTLVDRYGGKVVMAWGVALWSLATFLTPWAADSSLWALLAARAMVGVAEGV 219

Query: 206 ALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSG 265
           ALP MNNMVARWFP TER+RAV IAM GF  GN +GL+LSPILMSQ GI+GPFVIFGLSG
Sbjct: 220 ALPCMNNMVARWFPTTERSRAVGIAMAGFQLGNVVGLMLSPILMSQGGIYGPFVIFGLSG 279

Query: 266 FLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMP 325
           FLW+LVWLSATSS PDRHPQI+K ELEYI ++K++   M NK    + IPPF RLLSKMP
Sbjct: 280 FLWLLVWLSATSSAPDRHPQITKSELEYI-KQKKQISTMENKRISTSGIPPFGRLLSKMP 338

Query: 326 TWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSD 385
           TW++IVAN+MHSWGFFVILSWMPIYFN VYH++L+QA+WFSAVPWS+MAFTGY+ G  SD
Sbjct: 339 TWAVIVANSMHSWGFFVILSWMPIYFNSVYHVNLKQAAWFSAVPWSMMAFTGYIAGFWSD 398

Query: 386 MLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLV 445
           +LI+RGTS+TLTRKI+QSIGFI PGIALIGLT AK P++ASAWL+LA+G+KSFSH GFL+
Sbjct: 399 LLIRRGTSITLTRKIMQSIGFIGPGIALIGLTTAKQPLVASAWLSLAVGLKSFSHLGFLI 458

Query: 446 NLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFY 505
           NLQEIAP+YSGVLHG+  TAGT AAI+GTVGAGFFVEL+GSFQGF+LLT++LY LSALFY
Sbjct: 459 NLQEIAPEYSGVLHGMCLTAGTLAAIVGTVGAGFFVELLGSFQGFILLTAILYLLSALFY 518

Query: 506 IIFSTGERVNFDEAA 520
            I++TGERV+FD  A
Sbjct: 519 NIYATGERVDFDTTA 533

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22331630|ref|NP_190282.2| putative anion transporter 4 [Arabidopsis thaliana] gi|75253404|sp|Q66GI9.1|ANTR4_ARATH RecName: Full=Probable anion transporter 4, chloroplastic; AltName: Full=Phosphate transporter PHT4;3; Flags: Precursor gi|51536596|gb|AAU05536.1| At3g46980 [Arabidopsis thaliana] gi|332644705|gb|AEE78226.1| putative anion transporter 4 [Arabidopsis thaliana]

 Score =  697 bits (1800), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/495 (72%), Positives = 416/495 (84%), Gaps = 10/495 (2%)

Query: 34  FPYKSTNRKLF----RNVSS----NSGSVGLRTIVGCRVRTGVSSNDKSFDLAPNEDEAL 85
            P +   RKL     R V+S     + SV L  I   R+R   S   ++ +    E  A 
Sbjct: 41  LPERDRRRKLVLCTGRVVNSLKFTGNTSVDLCGIPRHRLRVSCSDARRTPEETAAELTA- 99

Query: 86  APNFLEFITSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLW 145
            PNF EFITSERVKVV+MLALALALCNADRVVMSVAIVPLSL+ GWS+SFSGIVQSSFLW
Sbjct: 100 QPNFSEFITSERVKVVAMLALALALCNADRVVMSVAIVPLSLSRGWSKSFSGIVQSSFLW 159

Query: 146 GYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGV 205
           GYL+SPIAGGTLVD YGGK++MAWGVALWSLATFLTPWAAD+SL ALLA RA+VG+AEGV
Sbjct: 160 GYLISPIAGGTLVDRYGGKVVMAWGVALWSLATFLTPWAADSSLWALLAARAMVGVAEGV 219

Query: 206 ALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSG 265
           ALP MNNMVARWFP TER+RAV IAM GF  GN +GL+LSPILMSQ GI+GPFVIFGLSG
Sbjct: 220 ALPCMNNMVARWFPPTERSRAVGIAMAGFQLGNVVGLMLSPILMSQGGIYGPFVIFGLSG 279

Query: 266 FLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMP 325
           FLW+LVWLSATSS PDRHPQI+K ELEYI ++K++   M NK    + IPPF RLLSKMP
Sbjct: 280 FLWLLVWLSATSSAPDRHPQITKSELEYI-KQKKQISTMENKRISTSGIPPFGRLLSKMP 338

Query: 326 TWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSD 385
           TW++IVAN+MHSWGFFVILSWMPIYFN VYH++L+QA+WFSAVPWS+MAFTGY+ G  SD
Sbjct: 339 TWAVIVANSMHSWGFFVILSWMPIYFNSVYHVNLKQAAWFSAVPWSMMAFTGYIAGFWSD 398

Query: 386 MLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLV 445
           +LI+RGTS+TLTRKI+QSIGFI PGIALIGLT AK P++ASAWL+LA+G+KSFSH GFL+
Sbjct: 399 LLIRRGTSITLTRKIMQSIGFIGPGIALIGLTTAKQPLVASAWLSLAVGLKSFSHLGFLI 458

Query: 446 NLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFY 505
           NLQEIAP+YSGVLHG+  TAGT AAI+GTVGAGFFVEL+GSFQGF+LLT++LY LSALFY
Sbjct: 459 NLQEIAPEYSGVLHGMCLTAGTLAAIVGTVGAGFFVELLGSFQGFILLTAILYLLSALFY 518

Query: 506 IIFSTGERVNFDEAA 520
            I++TGERV+FD  A
Sbjct: 519 NIYATGERVDFDTTA 533

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79314547|ref|NP_001030824.1| putative anion transporter 4 [Arabidopsis thaliana] gi|332644707|gb|AEE78228.1| putative anion transporter 4 [Arabidopsis thaliana]

 Score =  697 bits (1800), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/495 (72%), Positives = 416/495 (84%), Gaps = 10/495 (2%)

Query: 34  FPYKSTNRKLF----RNVSS----NSGSVGLRTIVGCRVRTGVSSNDKSFDLAPNEDEAL 85
            P +   RKL     R V+S     + SV L  I   R+R   S   ++ +    E  A 
Sbjct: 41  LPERDRRRKLVLCTGRVVNSLKFTGNTSVDLCGIPRHRLRVSCSDARRTPEETAAELTA- 99

Query: 86  APNFLEFITSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLW 145
            PNF EFITSERVKVV+MLALALALCNADRVVMSVAIVPLSL+ GWS+SFSGIVQSSFLW
Sbjct: 100 QPNFSEFITSERVKVVAMLALALALCNADRVVMSVAIVPLSLSRGWSKSFSGIVQSSFLW 159

Query: 146 GYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGV 205
           GYL+SPIAGGTLVD YGGK++MAWGVALWSLATFLTPWAAD+SL ALLA RA+VG+AEGV
Sbjct: 160 GYLISPIAGGTLVDRYGGKVVMAWGVALWSLATFLTPWAADSSLWALLAARAMVGVAEGV 219

Query: 206 ALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSG 265
           ALP MNNMVARWFP TER+RAV IAM GF  GN +GL+LSPILMSQ GI+GPFVIFGLSG
Sbjct: 220 ALPCMNNMVARWFPPTERSRAVGIAMAGFQLGNVVGLMLSPILMSQGGIYGPFVIFGLSG 279

Query: 266 FLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMP 325
           FLW+LVWLSATSS PDRHPQI+K ELEYI ++K++   M NK    + IPPF RLLSKMP
Sbjct: 280 FLWLLVWLSATSSAPDRHPQITKSELEYI-KQKKQISTMENKRISTSGIPPFGRLLSKMP 338

Query: 326 TWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSD 385
           TW++IVAN+MHSWGFFVILSWMPIYFN VYH++L+QA+WFSAVPWS+MAFTGY+ G  SD
Sbjct: 339 TWAVIVANSMHSWGFFVILSWMPIYFNSVYHVNLKQAAWFSAVPWSMMAFTGYIAGFWSD 398

Query: 386 MLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLV 445
           +LI+RGTS+TLTRKI+QSIGFI PGIALIGLT AK P++ASAWL+LA+G+KSFSH GFL+
Sbjct: 399 LLIRRGTSITLTRKIMQSIGFIGPGIALIGLTTAKQPLVASAWLSLAVGLKSFSHLGFLI 458

Query: 446 NLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFY 505
           NLQEIAP+YSGVLHG+  TAGT AAI+GTVGAGFFVEL+GSFQGF+LLT++LY LSALFY
Sbjct: 459 NLQEIAPEYSGVLHGMCLTAGTLAAIVGTVGAGFFVELLGSFQGFILLTAILYLLSALFY 518

Query: 506 IIFSTGERVNFDEAA 520
            I++TGERV+FD  A
Sbjct: 519 NIYATGERVDFDTTA 533

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255558820|ref|XP_002520433.1| Sialin, putative [Ricinus communis] gi|223540275|gb|EEF41846.1| Sialin, putative [Ricinus communis]

 Score =  695 bits (1794), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/496 (72%), Positives = 409/496 (82%), Gaps = 13/496 (2%)

Query: 30  FSSQFPYKSTNRKLFRNVSSNSGSV-GLRTIVGCRVRTGVSSNDKSFDLAPNEDEAL--- 85
           F S+F   S ++ +       S S+   R +   R+R  VSS D  F   P  +E     
Sbjct: 35  FPSRFQAVSDSQNVSVKFQLQSDSIFKFRGVCSSRIR--VSSEDARFSSLPKREEEEEEE 92

Query: 86  -------APNFLEFITSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGI 138
                    +F EFITSERVKV +MLALAL+LCNADRVVMSVAIVPLSLA+GW+RSFSGI
Sbjct: 93  EEEEEDKVASFREFITSERVKVAAMLALALSLCNADRVVMSVAIVPLSLANGWTRSFSGI 152

Query: 139 VQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAV 198
           VQSSFLWGYL+SPIAGGTLVDYYGGK++M WGVALWSLATFLTP+AA+TSL  L+AMRA+
Sbjct: 153 VQSSFLWGYLISPIAGGTLVDYYGGKVVMGWGVALWSLATFLTPFAAETSLWVLMAMRAL 212

Query: 199 VGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPF 258
           +G+AEGVALP MNNM+ARWFP TERARAV IAM GF  G AIGL LSPILMSQ GIFGPF
Sbjct: 213 LGIAEGVALPCMNNMIARWFPPTERARAVGIAMAGFQLGCAIGLTLSPILMSQGGIFGPF 272

Query: 259 VIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFR 318
           VIFGLSGFLWVLVWLSA SS+PDR  QISK ELEYIL++KQ+   + NK K   +IPPFR
Sbjct: 273 VIFGLSGFLWVLVWLSAISSSPDRSSQISKCELEYILKKKQQSFPVENKPKTTRIIPPFR 332

Query: 319 RLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGY 378
           RLLSKMPTW++IVAN+MHSWGFFVILSWMPIYFN +YH+DL++A+WFSAVPWSVMA  GY
Sbjct: 333 RLLSKMPTWALIVANSMHSWGFFVILSWMPIYFNSIYHVDLKRAAWFSAVPWSVMAVMGY 392

Query: 379 LGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSF 438
            GG+ SD LI+ G ++TLTRKI+QSIGF+ PGIALIGLT AKSP +ASAWLTLA+ +K+F
Sbjct: 393 FGGMWSDTLIRSGMTITLTRKIMQSIGFMGPGIALIGLTTAKSPTIASAWLTLAVALKAF 452

Query: 439 SHSGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLY 498
           SHSGFLVN QEIAPQYSGVLHGISNTAGT AAI+GTVGAGFFVELVGSFQGFLLLTS LY
Sbjct: 453 SHSGFLVNFQEIAPQYSGVLHGISNTAGTLAAIMGTVGAGFFVELVGSFQGFLLLTSALY 512

Query: 499 FLSALFYIIFSTGERV 514
           FLSALFYI FSTGE++
Sbjct: 513 FLSALFYIFFSTGEKL 528

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356553048|ref|XP_003544870.1| PREDICTED: probable anion transporter 4, chloroplastic-like [Glycine max]

 Score =  682 bits (1761), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/484 (75%), Positives = 410/484 (84%), Gaps = 10/484 (2%)

Query: 37  KSTNRKLFRNVSSNSGSVGLRTIVGCRVRTGVSSNDKSFDLAPNEDEALAPN-FLEFITS 95
           K T  K F N SS S    LR++     R  VSSND  F+  P E +    + F EFITS
Sbjct: 37  KRTEFKFFANGSSAS----LRSLP----RLYVSSNDARFNSGPEESQQQQSSSFAEFITS 88

Query: 96  ERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGG 155
           ERVKVV+MLALALALCNADRVVMSVAIVPLSLA+GWSR+F+GIVQSSFLWGYLVSPIAGG
Sbjct: 89  ERVKVVAMLALALALCNADRVVMSVAIVPLSLANGWSRAFAGIVQSSFLWGYLVSPIAGG 148

Query: 156 TLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVA 215
            LVD+YGGK++MAWGVALWSLATFLTPWA+ TSLLALL +RA++G+AEGVALP+MNNMV 
Sbjct: 149 VLVDHYGGKVVMAWGVALWSLATFLTPWASQTSLLALLTVRALLGVAEGVALPSMNNMVV 208

Query: 216 RWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSA 275
           RWFPQTER+RAV I+M GF  G AIGL LSPILMSQ GIFGPFVIFGLSGFLWVLVWLSA
Sbjct: 209 RWFPQTERSRAVGISMAGFMLGCAIGLTLSPILMSQGGIFGPFVIFGLSGFLWVLVWLSA 268

Query: 276 TSSTPDRHPQISKYELEYILREKQKPLLMGN-KHKPATVIPPFRRLLSKMPTWSIIVANA 334
           TSSTPD+ PQISKYELEYIL  +QK   +   K K   VIPPFRRLLSK+PTWS+I+ANA
Sbjct: 269 TSSTPDQSPQISKYELEYILNRRQKSFSVETAKPKKVKVIPPFRRLLSKLPTWSLIIANA 328

Query: 335 MHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSV 394
           MHSWGFF++LSWMPIYF+ VY +DLR A+WFSAVPW++MA  GY  GL SDM+IQ GTSV
Sbjct: 329 MHSWGFFIVLSWMPIYFSSVYRVDLRHAAWFSAVPWALMAVMGYFAGLWSDMMIQSGTSV 388

Query: 395 TLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQY 454
           TLTRKI+Q IGF+ PG+ LIGL  AK+P + SAWLTLA G+KSFSHSGFLVNLQEIAP+Y
Sbjct: 389 TLTRKIMQCIGFVGPGLCLIGLATAKNPAIGSAWLTLAFGLKSFSHSGFLVNLQEIAPRY 448

Query: 455 SGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYIIFSTGERV 514
           SGVLHGISNTAGT AAI+GTVGAGFFVELVGSF GFLLLTSLLYFL+A+FY +F+TGERV
Sbjct: 449 SGVLHGISNTAGTLAAIIGTVGAGFFVELVGSFPGFLLLTSLLYFLAAIFYCLFATGERV 508

Query: 515 NFDE 518
           NFD+
Sbjct: 509 NFDD 512

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	521
TAIR|locus:2065615	512	PHT4;2 "AT2G38060" [Arabidopsi	0.815	0.830	0.531	8.3e-122
TAIR|locus:2126066	541	ANTR2 "AT4G00370" [Arabidopsis	0.777	0.748	0.399	1.7e-84
TAIR|locus:2060694	512	PHT4;1 "AT2G29650" [Arabidopsi	0.829	0.843	0.396	3.2e-81
TAIR|locus:2149199	517	PHT4;5 "phosphate transporter	0.733	0.738	0.330	5.3e-56
UNIPROTKB|E1B7R3	495	SLC17A5 "Uncharacterized prote	0.646	0.680	0.339	3.1e-51
TAIR|locus:2158710	432	PHT4;6 "AT5G44370" [Arabidopsi	0.725	0.875	0.315	1.1e-50
UNIPROTKB|F1RQG9	497	SLC17A5 "Uncharacterized prote	0.646	0.678	0.342	2.8e-50
RGD|1311388	495	Slc17a5 "solute carrier family	0.646	0.680	0.321	4.6e-50
MGI|MGI:1924105	495	Slc17a5 "solute carrier family	0.646	0.680	0.318	7.4e-50
UNIPROTKB|Q5ZL94	484	SLC17A5 "Uncharacterized prote	0.650	0.700	0.325	1.5e-49

TAIR|locus:2065615 PHT4;2 "AT2G38060" [Arabidopsis thaliana (taxid:3702)]

 Score = 1198 (426.8 bits), Expect = 8.3e-122, P = 8.3e-122
 Identities = 230/433 (53%), Positives = 303/433 (69%)

Query:    83 EALAPNFLEFITSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSS 142
             EA+A   +  +  ER+KVV + A  + LCNADRVVMSVA+VPL+   GWS SF G+VQSS
Sbjct:    86 EAIAE--VRTMMPERIKVVILTACMMCLCNADRVVMSVAVVPLADKLGWSSSFLGVVQSS 143

Query:   143 FLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLA 202
             FLWGY+ S + GG LVD YGGK ++AWGVALWSLAT LTPWAA  S LALL +RA  GLA
Sbjct:   144 FLWGYIFSSVIGGALVDRYGGKRVLAWGVALWSLATLLTPWAAAHSTLALLCVRAFFGLA 203

Query:   203 EGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFG 262
             EGVA+P+M  +++RWFP  ERA AV I+M GF  GN +GL+L+P+++S  GI GPF++F 
Sbjct:   204 EGVAMPSMTTLLSRWFPMDERASAVGISMAGFHMGNVVGLLLTPLMLSSIGISGPFILFA 263

Query:   263 LSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGN-KHKPATVIPPFRRLL 321
               G LWV  W S  ++ P   P I++ EL  I  +  KP+       KP    P  R LL
Sbjct:   264 SLGLLWVSTWSSGVTNNPQDSPFITRSELRLI--QAGKPVQPSTISPKPN---PSLRLLL 318

Query:   322 SKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGG 381
             SK+PTW+II AN  ++WG+FV+LSWMP+YF  V++++L+QA+WFSA+PW+ MA +GY  G
Sbjct:   319 SKLPTWAIIFANVTNNWGYFVLLSWMPVYFQTVFNVNLKQAAWFSALPWATMAISGYYAG 378

Query:   382 LLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHS 441
               SD LI+ G SVT  RKI+QSIGF+ PG++L+ L  AKSP  A+ ++T+A+ + SFS +
Sbjct:   379 AASDFLIRTGHSVTSVRKIMQSIGFMGPGLSLLCLNFAKSPSCAAVFMTIALSLSSFSQA 438

Query:   442 GFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGXXXXXXXXXXXX 501
             GFL+N+Q+IAPQY+G LHGISN AGT AAI+ T+G G+FV+ +GSFQ             
Sbjct:   439 GFLLNMQDIAPQYAGFLHGISNCAGTLAAIVSTIGTGYFVQWLGSFQAFLTVTAFLYFAT 498

Query:   502 XXXXXXXSTGERV 514
                    +TGERV
Sbjct:   499 TVFWLLFATGERV 511

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0008514 "organic anion transmembrane transporter activity" evidence=ISS

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005315 "inorganic phosphate transmembrane transporter activity" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2126066 ANTR2 "AT4G00370" [Arabidopsis thaliana (taxid:3702)]

 Score = 846 (302.9 bits), Expect = 1.7e-84, P = 1.7e-84
 Identities = 166/416 (39%), Positives = 252/416 (60%)

Query:   100 VVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVD 159
             +V +   +  LCN DRV MS+AI+P+S  + WS +  G++QSSF WGYL++ I GG   D
Sbjct:   134 IVLLCFSSFLLCNMDRVNMSIAILPMSQEYNWSSATVGLIQSSFFWGYLLTQILGGIWAD 193

Query:   160 YYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFP 219
              +GGK+++ +GV  WS AT +TP AA   L  LL +RA +G+ EGVA+PAMNNM+++W P
Sbjct:   194 KFGGKVVLGFGVVWWSFATIMTPIAARLGLPFLLVVRAFMGIGEGVAMPAMNNMLSKWIP 253

Query:   220 QTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSST 279
              +ER+R++A+   G   G+  GL  SP+L+++ G    F  FG  G +W L+WL    S+
Sbjct:   254 VSERSRSLALVYSGMYLGSVTGLAFSPMLITKFGWPSVFYSFGSLGSIWFLLWLKFAYSS 313

Query:   280 PDRHPQISKYELEYILREKQKPLLMGNK-HKPATVIPPFRRLLSKMPTWSIIVANAMHSW 338
             P   P +S+        E++K +L G+K  +P TVIP ++ +LSK P W++I+++  H+W
Sbjct:   314 PKDDPDLSE--------EEKKVILGGSKPREPVTVIP-WKLILSKPPVWALIISHFCHNW 364

Query:   339 GFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTR 398
             G F++L+WMP Y+N V   +L ++     +PW  MA    +GG ++D L+ RG S+T  R
Sbjct:   365 GTFILLTWMPTYYNQVLKFNLTESGLLCVLPWLTMAVFANIGGWIADTLVSRGLSITNVR 424

Query:   399 KILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVL 458
             KI+QSIGF+ P   L  L+  K+P MA   +  + G  +FS SG   N Q+I P+Y+GVL
Sbjct:   425 KIMQSIGFLGPAFFLSQLSHVKTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVL 484

Query:   459 HGISNTAGTFAAILGTVGAGFFVELVGSFQGXXXXXXXXXXXXXXXXXXXSTGERV 514
              G+SNTAG  A + GT   G+ ++  GS+                     +TGE++
Sbjct:   485 LGLSNTAGVLAGVFGTAATGYILQR-GSWDDVFKVAVALYLIGTLVWNLFATGEKI 539

GO:0008514 "organic anion transmembrane transporter activity" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009706 "chloroplast inner membrane" evidence=IDA

GO:0005315 "inorganic phosphate transmembrane transporter activity" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

TAIR|locus:2060694 PHT4;1 "AT2G29650" [Arabidopsis thaliana (taxid:3702)]

 Score = 815 (292.0 bits), Expect = 3.2e-81, P = 3.2e-81
 Identities = 178/449 (39%), Positives = 257/449 (57%)

Query:    68 VSSNDKSFDLAPNEDEALAPNFLEFITSERVKVVSMLALALALCNADRVVMSVAIVPLSL 127
             VS N+     +P+    + P + EF   +R  +V +   A  LCN DRV MS+AI+P+S 
Sbjct:    77 VSGNNDVVSDSPSS--IVLPWWEEF--PKRWVIVLLCFSAFLLCNMDRVNMSIAILPMSA 132

Query:   128 AHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADT 187
              +GW+ +  G++QSSF WGYL++ IAGG   D  GGK ++ +GV  WS+AT LTP AA  
Sbjct:   133 EYGWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKRVLGFGVIWWSIATILTPVAAKL 192

Query:   188 SLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPI 247
              L  LL +RA +G+ EGVA+PAMNN++++W P  ER+R++A+   G   G+  GL  SP 
Sbjct:   193 GLPYLLVVRAFMGVGEGVAMPAMNNILSKWVPVQERSRSLALVYSGMYLGSVTGLAFSPF 252

Query:   248 LMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGN- 306
             L+ Q G    F  FG  G +W+ +WL+   S+P   P +        L E++K L+  N 
Sbjct:   253 LIHQFGWPSVFYSFGSLGTVWLTLWLTKAESSPLEDPTL--------LPEERK-LIADNC 303

Query:   307 -KHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWF 365
                +P   IP +R +LSK P W++I  +  H+WG F++L+WMP Y++ V   +L ++   
Sbjct:   304 ASKEPVKSIP-WRLILSKPPVWALISCHFCHNWGTFILLTWMPTYYHQVLKFNLMESGLL 362

Query:   366 SAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMA 425
             S  PW  MA +   GG ++D L+ RG SVT  RKI+Q+IGF+ P   L  L    SP MA
Sbjct:   363 SVFPWMTMAISANAGGWIADTLVSRGFSVTNVRKIMQTIGFLGPAFFLTQLKHIDSPTMA 422

Query:   426 SAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVELVG 485
                +  + G  +FS SG   N Q+IAP+YSGVL G+SNTAG  A +LGT   G  ++  G
Sbjct:   423 VLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVLGTAATGHILQH-G 481

Query:   486 SFQGXXXXXXXXXXXXXXXXXXXSTGERV 514
             S+                     STGE++
Sbjct:   482 SWDDVFTISVGLYLVGTVIWNLFSTGEKI 510

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0008514 "organic anion transmembrane transporter activity" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009624 "response to nematode" evidence=IEP

GO:0005315 "inorganic phosphate transmembrane transporter activity" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0030504 "inorganic diphosphate transmembrane transporter activity" evidence=IGI

GO:0009416 "response to light stimulus" evidence=IEP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042631 "cellular response to water deprivation" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2149199 PHT4;5 "phosphate transporter 4;5" [Arabidopsis thaliana (taxid:3702)]

 Score = 577 (208.2 bits), Expect = 5.3e-56, P = 5.3e-56
 Identities = 131/396 (33%), Positives = 206/396 (52%)

Query:    96 ERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGG 155
             +R K++   +LA  +CN D+V +S+AI+P+S   GWS S +G+VQSSF WGY +S + GG
Sbjct:    97 QRYKLIGATSLAFVICNMDKVNLSIAIIPMSHQFGWSSSVAGLVQSSFFWGYALSQLPGG 156

Query:   156 TLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVA 215
              L   +GG+ ++  GV  WS AT L P  A   +  L+  R +VG+ EGV+  A  +++A
Sbjct:   157 WLSKIFGGRKVLEIGVFTWSFATALVPLLAGF-MPGLIFSRILVGIGEGVSPSAATDLIA 215

Query:   216 RWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSA 275
             R  P  ER+RAV    GG + G+ +GL+L+P ++        F +FGL G  W + +   
Sbjct:   216 RTIPVKERSRAVGFVFGGLSLGSVMGLLLAPPIIETFNWESVFYLFGLLGVGWFVGFQFL 275

Query:   276 TSSTPD-RHPQIS-KYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVAN 333
                    +  +IS  ++ E   +E+     +G+  K      P++        W++I  +
Sbjct:   276 NEEEVSYKGNEISTSHKSENATKEE-----LGSSLKEI----PWKSFFQSPAVWAMIYTH 326

Query:   334 AMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTS 393
                SWG +  LSW+P YF+    ++L +A+W S +P         L    +D LI  G  
Sbjct:   327 FCGSWGHYTCLSWLPTYFSEALSLNLTEAAWVSILPPLASIVVTSLASQFADYLITNGVD 386

Query:   394 VTLTRKILQSIGFIAPGIA--LIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIA 451
              T  RKI Q+I F+AP I   L  +     P      LT  + + SF+ SG     Q+I+
Sbjct:   387 TTTVRKICQTIAFVAPAICMTLSSVDIGLPPWEIVGILTAGLALSSFALSGLYCTHQDIS 446

Query:   452 PQYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSF 487
             P+Y+ +L GI+NT G    I+G    GF ++   S+
Sbjct:   447 PEYASILLGITNTVGAVPGIVGVALTGFLLDSTHSW 482

GO:0009507 "chloroplast" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016020 "membrane" evidence=ISS

GO:0005315 "inorganic phosphate transmembrane transporter activity" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0015706 "nitrate transport" evidence=RCA

UNIPROTKB|E1B7R3 SLC17A5 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 532 (192.3 bits), Expect = 3.1e-51, P = 3.1e-51
 Identities = 118/348 (33%), Positives = 185/348 (53%)

Query:   131 WSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLL 190
             W     G +  SF +GY+++ I GG +    GGK+++ +GV   ++ T  TP AAD    
Sbjct:   103 WDAETQGWILGSFFYGYIITQIPGGYVASRSGGKLLLGFGVLGTAVFTLFTPLAADFGFG 162

Query:   191 ALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMS 250
             AL+A+RA+ GL EGV  PAM+ M + W P  ER++ ++I+  G   G  + L LS ++  
Sbjct:   163 ALVALRALEGLGEGVTFPAMHAMWSSWAPPLERSKLLSISYAGAQLGTVVSLPLSGVICY 222

Query:   251 QAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKP 310
                    F  FGL G +W ++W+   S TP+ H  I+ YE EYIL   +  L   +  K 
Sbjct:   223 YMNWTYVFYFFGLVGIIWFILWICLVSDTPETHKTITPYEKEYILSSLKNQL---SSQKS 279

Query:   311 ATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPW 370
                IP    +L  +P W+I+VA+  ++W F+ +L+ +P Y   V   ++++  + SAVP+
Sbjct:   280 VPWIP----MLKSLPLWAIVVAHFSYNWTFYTLLTLLPTYMKEVLRFNIQENGFLSAVPY 335

Query:   371 SVMAFTGYLGGLLSDMLIQRGTSVTL-TRKILQSIGFIAPGIALI--GLTAAKSPVMASA 427
                     L G  +D L  R    TL  R++   IG I P I L+  G        +A A
Sbjct:   336 LGCWLCMILSGQAADNLRARWNFSTLWVRRVFSLIGMIGPAIFLVAAGFIGCDYS-LAVA 394

Query:   428 WLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTV 475
             +LT++  +  F  SGF +N  +IAP Y+G+L GI+NT  T   ++G +
Sbjct:   395 FLTISTTLGGFCSSGFSINHLDIAPSYAGILLGITNTFATIPGMIGPI 442

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IEA

GO:0015739 "sialic acid transport" evidence=IEA

GO:0015136 "sialic acid transmembrane transporter activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005765 "lysosomal membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

TAIR|locus:2158710 PHT4;6 "AT5G44370" [Arabidopsis thaliana (taxid:3702)]

 Score = 527 (190.6 bits), Expect = 1.1e-50, P = 1.1e-50
 Identities = 123/390 (31%), Positives = 205/390 (52%)

Query:    96 ERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGG 155
             +R  +V +  L+  +C  +RV  S+A    + A G ++S  G + S+F  GY  S + GG
Sbjct:     8 QRYVIVFLTFLSTCVCYIERVGFSIAYTVAADAAGINQSSKGTILSTFFVGYACSQVPGG 67

Query:   156 TLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAM-RAVVGLAEGVALPAMNNMV 214
                   GG+ ++     LWS   FL P   D + + LL + R +VG+A+G   P+++ ++
Sbjct:    68 WAAQKIGGRKVLLLSFVLWSSTCFLVP--LDPNRVGLLVVARLLVGVAQGFIFPSIHTVL 125

Query:   215 ARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLS 274
             A+W P  ER+R V+I   G   G A+G+ L P L+   G    F+   L+G +W L+W+ 
Sbjct:   126 AQWVPPHERSRLVSITTSGMYLGAALGMWLLPALVELRGPESVFLAEALAGVIWSLLWIR 185

Query:   275 ATSSTP-DRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVAN 333
               +  P   HP+ +       L     P  + N HK   +  P+++++  +P W+I+V N
Sbjct:   186 YATDPPRSEHPKAAAAGFGGALL----PTNV-NHHKVTHI--PWKKIMLSLPVWAIVVNN 238

Query:   334 AMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLI-QRGT 392
                 +  +V+++W+P YF     I L+       VP+  M     +GG ++D LI +R  
Sbjct:   239 FTFHYALYVLMNWLPTYFELGLQISLQGMDSSKMVPYLNMFVFSIVGGFIADYLITKRIL 298

Query:   393 SVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP 452
             SVT TRK L ++GF+    AL+ L   ++        ++A+G  +   +GF VN  +IAP
Sbjct:   299 SVTRTRKFLNTVGFLIASAALMVLPMFRTENGVILCSSVALGFLALGRAGFAVNHMDIAP 358

Query:   453 QYSGVLHGISNTAGTFAAILGTVGAGFFVE 482
             +Y+G++ G+SNTAGT A I+G    G  +E
Sbjct:   359 RYAGIVMGVSNTAGTLAGIIGVDLTGKLLE 388

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005794 "Golgi apparatus" evidence=ISM;IDA

GO:0008514 "organic anion transmembrane transporter activity" evidence=ISS

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009624 "response to nematode" evidence=IEP

GO:0005315 "inorganic phosphate transmembrane transporter activity" evidence=IDA

GO:0015706 "nitrate transport" evidence=RCA

UNIPROTKB|F1RQG9 SLC17A5 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 523 (189.2 bits), Expect = 2.8e-50, P = 2.8e-50
 Identities = 120/350 (34%), Positives = 188/350 (53%)

Query:   131 WSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLL 190
             W+    G +  SF +GY+++ I GG +    GGK+++ +G+   S+ T LTP AAD  + 
Sbjct:   103 WNAETQGWILGSFFYGYIITQIPGGYIASRSGGKLLLGFGILGTSVFTLLTPLAADFGVG 162

Query:   191 ALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAI--AMGGFTSGNAIGLVLSPIL 248
             AL+A+RA+ GL EGV  PAM+ M + W P  ER++ ++I  A+ G   G  + L LS I+
Sbjct:   163 ALIALRALEGLGEGVTFPAMHAMWSSWAPPLERSKLLSISYAVLGAQLGTVVSLPLSGII 222

Query:   249 MSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKH 308
                      F +FGL G +W ++W    S TPD H  IS YE EYIL   +  L   +  
Sbjct:   223 CFYLNWTYVFYLFGLVGIIWFILWTWLVSDTPDTHRTISPYEKEYILSSLRNQL---SSQ 279

Query:   309 KPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAV 368
             K    IP    +L  +P W+I+VA+  ++W F+ +L+ +P Y   V   ++++  + SAV
Sbjct:   280 KSVPWIP----MLKSLPLWAIVVAHFSYNWTFYTLLTLLPTYMKEVLRFNIQENGFLSAV 335

Query:   369 PWSVMAFTGYLGGLLSDMLIQRGTSVTL-TRKILQSIGFIAPGIALI--GLTAAKSPVMA 425
             P+        L G  +D L  +    TL  R++   IG   P + L+  G        +A
Sbjct:   336 PYFGCWVCMILSGQAADNLRAKWNFSTLCVRRVFSLIGMFGPAVFLVAAGFIGCDYS-LA 394

Query:   426 SAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTV 475
              A+LT++  +  F  SGF ++  +IAP Y+G+L GI+NT  T   ++G V
Sbjct:   395 VAFLTISTTLGGFCSSGFSISHLDIAPSYAGILLGITNTFATIPGMIGPV 444

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IEA

GO:0015739 "sialic acid transport" evidence=IEA

GO:0015136 "sialic acid transmembrane transporter activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005765 "lysosomal membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

RGD|1311388 Slc17a5 "solute carrier family 17 (anion/sugar transporter), member 5" [Rattus norvegicus (taxid:10116)]

 Score = 521 (188.5 bits), Expect = 4.6e-50, P = 4.6e-50
 Identities = 112/348 (32%), Positives = 187/348 (53%)

Query:   131 WSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLL 190
             W     G +  SF +GY+V+ I GG +    GGK+++  G+   ++ T  TP AAD  ++
Sbjct:   103 WDAETQGWILGSFFYGYIVTQIPGGYMASRIGGKLLLGLGILGTAVFTLFTPLAADLGVV 162

Query:   191 ALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMS 250
             AL+ +RA+ GL EGV  PAM+ M + W P  ER++ + I+  G   G  I L LS I+  
Sbjct:   163 ALIVLRALEGLGEGVTFPAMHAMWSSWAPPLERSKLLTISYAGAQLGTVISLPLSGIICY 222

Query:   251 QAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKP 310
                    F +FGL G +W ++W+   S TP+ H  IS YE EYI+   +  L   +  K 
Sbjct:   223 YMNWTYVFYLFGLVGIVWFILWMWIVSDTPETHKTISHYEKEYIVSSLKNQL---SSQK- 278

Query:   311 ATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPW 370
                + P+  +L  +P W+I+VA+  ++W F+ +L+ +P Y   +   ++++  + SA+P+
Sbjct:   279 ---VVPWVSILKSLPLWAIVVAHFSYNWTFYTLLTLLPTYMKEILRFNVQENGFLSALPY 335

Query:   371 SVMAFTGYLGGLLSDML-IQRGTSVTLTRKILQSIGFIAPGIALI--GLTAAKSPVMASA 427
                     + G  +D L ++   S    R+I   IG + P + L+  G        +A A
Sbjct:   336 FGCWLCMIVCGQAADYLRVKWNFSTISVRRIFSLIGMVGPAVFLVAAGFIGCDYS-LAVA 394

Query:   428 WLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTV 475
             +LT++  +  F+ SGF +N  +IAP Y+G+L GI+NT  T   ++G +
Sbjct:   395 FLTISTTLGGFASSGFSINHLDIAPSYAGILLGITNTFATIPGMIGPI 442

GO:0005764 "lysosome" evidence=IDA

GO:0005765 "lysosomal membrane" evidence=IEA;ISO

GO:0005886 "plasma membrane" evidence=IEA;ISO

GO:0008643 "carbohydrate transport" evidence=IEA

GO:0015136 "sialic acid transmembrane transporter activity" evidence=ISO;IDA

GO:0015739 "sialic acid transport" evidence=ISO;IDA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IEA;ISO

MGI|MGI:1924105 Slc17a5 "solute carrier family 17 (anion/sugar transporter), member 5" [Mus musculus (taxid:10090)]

 Score = 519 (187.8 bits), Expect = 7.4e-50, P = 7.4e-50
 Identities = 111/348 (31%), Positives = 185/348 (53%)

Query:   131 WSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLL 190
             W     G +  SF +GY+V+ I GG +    GGK+++  G+   S+ T  TP AAD  ++
Sbjct:   103 WDAETQGWILGSFFYGYIVTQIPGGYIASRVGGKLLLGLGILGTSVFTLFTPLAADLGVV 162

Query:   191 ALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMS 250
              L+ +RA+ GL EGV  PAM+ M + W P  ER++ + I+  G   G  I L LS I+  
Sbjct:   163 TLVVLRALEGLGEGVTFPAMHAMWSSWAPPLERSKLLTISYAGAQLGTVISLPLSGIICY 222

Query:   251 QAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKP 310
                    F +FG+ G +W ++W+   S TP+ H  IS YE EYI+   +  L   +  K 
Sbjct:   223 YMNWTYVFYLFGIVGIVWFILWMWIVSDTPETHKTISHYEKEYIVSSLKNQL---SSQK- 278

Query:   311 ATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPW 370
                + P+  +L  +P W+I+VA+  ++W F+ +L+ +P Y   +   ++++  + SA+P+
Sbjct:   279 ---VVPWGSILKSLPLWAIVVAHFSYNWSFYTLLTLLPTYMKEILRFNVQENGFLSALPY 335

Query:   371 SVMAFTGYLGGLLSDML-IQRGTSVTLTRKILQSIGFIAPGIALI--GLTAAKSPVMASA 427
                     L G  +D L ++   S    R+I   +G + P + L+  G        +A A
Sbjct:   336 FGCWLCMILCGQAADYLRVKWNFSTISVRRIFSLVGMVGPAVFLVAAGFIGCDYS-LAVA 394

Query:   428 WLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTV 475
             +LT++  +  F+ SGF +N  +IAP Y+G+L GI+NT  T   + G +
Sbjct:   395 FLTISTTLGGFASSGFSINHLDIAPSYAGILLGITNTFATIPGMTGPI 442

GO:0005764 "lysosome" evidence=ISO

GO:0005765 "lysosomal membrane" evidence=ISO

GO:0005886 "plasma membrane" evidence=IDA

GO:0006810 "transport" evidence=IEA

GO:0006865 "amino acid transport" evidence=IEA

GO:0015136 "sialic acid transmembrane transporter activity" evidence=ISO

GO:0015293 "symporter activity" evidence=IEA

GO:0015739 "sialic acid transport" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IDA

GO:0030054 "cell junction" evidence=IEA

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0045202 "synapse" evidence=IEA

GO:0055085 "transmembrane transport" evidence=ISO

UNIPROTKB|Q5ZL94 SLC17A5 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 516 (186.7 bits), Expect = 1.5e-49, P = 1.5e-49
 Identities = 114/350 (32%), Positives = 185/350 (52%)

Query:   129 HGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTS 188
             + W     G +  SF +GY+++ I GG L    GGK+++ +G+   S+ T LTP AAD  
Sbjct:    90 YSWDADTQGWILGSFFYGYIITQIPGGYLASKIGGKLLLGFGIFGTSVFTLLTPLAADLG 149

Query:   189 LLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPIL 248
             +  L+A+RA+ GL EGV  PAM++M + W P  ER++ ++I+  G   G  + L LS ++
Sbjct:   150 VGYLIAVRALEGLGEGVTFPAMHSMWSSWAPPLERSKLLSISYAGAQLGTVVSLPLSGLI 209

Query:   249 MSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKH 308
                      F IFG  G LW   W+   S  P+ H  IS+ E EYIL   +  L   +  
Sbjct:   210 CYYMNWVYVFYIFGALGVLWFFFWMWLVSDKPETHKSISRIEREYILSSLKDQL---STQ 266

Query:   309 KPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAV 368
             K      P+R +L  +P W+I+VA+  ++W F+ +L+ +P Y   +   D ++  + SA+
Sbjct:   267 KSV----PWRPILESLPLWAIVVAHFSYNWTFYTLLTLLPTYMKEILRFDAQENGFLSAL 322

Query:   369 PWSVMAFTGYLGGLLSDMLIQRGT-SVTLTRKILQSIGFIAPGIALI--GLTAAKSPVMA 425
             P+        L G ++D L ++   S    RK    IG I P + L+  G        +A
Sbjct:   323 PYFGCWLCIILSGQIADHLREKQNFSTVCVRKCFTLIGMIGPAVFLVAAGFIGCNYE-LA 381

Query:   426 SAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTV 475
              A++T++  +  F  SG+ +N  +IAP Y+G+L GI+N+  T   ++G V
Sbjct:   382 VAFVTISTTLGGFCTSGYSINHLDIAPSYAGILLGITNSFATIPGMVGPV 431

GO:0016021 "integral to membrane" evidence=IEA

GO:0005765 "lysosomal membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0015136 "sialic acid transmembrane transporter activity" evidence=IEA

GO:0015739 "sialic acid transport" evidence=IEA

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8W0H5	PHT43_ORYSJ	No assigned EC number	0.7189	0.8176	0.8208	yes	no
Q66GI9	ANTR4_ARATH	No assigned EC number	0.7272	0.9309	0.9099	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	521
TIGR00894	465	TIGR00894, 2A0114euk, Na(+)-dependent inorganic ph	9e-49
TIGR00893	399	TIGR00893, 2A0114, D-galactonate transporter	8e-37
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	2e-28
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	2e-25
TIGR00881	379	TIGR00881, 2A0104, phosphoglycerate transporter fa	8e-17
COG2271	448	COG2271, UhpC, Sugar phosphate permease [Carbohydr	3e-13
TIGR00895	398	TIGR00895, 2A0115, benzoate transport	1e-10
TIGR00880	141	TIGR00880, 2_A_01_02, Multidrug resistance protein	1e-07
TIGR02332	412	TIGR02332, HpaX, 4-hydroxyphenylacetate permease	2e-07
COG2814	394	COG2814, AraJ, Arabinose efflux permease [Carbohyd	3e-07
COG2223	417	COG2223, NarK, Nitrate/nitrite transporter [Inorga	1e-06
pfam00083	449	pfam00083, Sugar_tr, Sugar (and other) transporter	1e-05
TIGR00890	377	TIGR00890, 2A0111, oxalate/formate antiporter fami	4e-05
TIGR04259	405	TIGR04259, oxa_formateAnti, oxalate/formate antipo	1e-04
TIGR00712	438	TIGR00712, glpT, glycerol-3-phosphate transporter	2e-04
PRK11551	406	PRK11551, PRK11551, putative 3-hydroxyphenylpropio	3e-04
PRK12307	426	PRK12307, PRK12307, putative sialic acid transport	5e-04
TIGR00886	366	TIGR00886, 2A0108, nitrite extrusion protein (nitr	0.002

>gnl|CDD|129972 TIGR00894, 2A0114euk, Na(+)-dependent inorganic phosphate cotransporter

 Score =  174 bits (443), Expect = 9e-49
 Identities = 116/441 (26%), Positives = 195/441 (44%), Gaps = 37/441 (8%)

Query: 104 LALALALCN----ADRVVMSVAIV------------------PLSLAHGWSRSFSGIVQS 141
           L+  L +CN    A R+ +S+ +V                   L      +  +SG +Q 
Sbjct: 20  LSFLLHICNVIIIAQRICLSLTMVAMVNKENSTDLACLSAENELDNIKNPNFKWSGALQG 79

Query: 142 SFLWGYLVSPIAGGTLVDYYGGKIIMAW----GVALWSLATFLTPWAADTSLLALLAMRA 197
             L  +    I     V Y  GK +  W    G+ L S+ + + PWAA   +  ++  R 
Sbjct: 80  LILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRV 139

Query: 198 VVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILM-SQAGIFG 256
           + GLA+G   PA + ++ +W P  ER+R + ++  GF  G  I L +S  L  S  G   
Sbjct: 140 IQGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPM 199

Query: 257 PFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPP 316
            F +FG+ G  W L+W    +  P  HP ISK+E +YI    Q       +  P   IP 
Sbjct: 200 IFYVFGIVGCAWSLLWFVFPADDPSIHPCISKFEKKYINSSLQGQKGSTRQSLPIKAIP- 258

Query: 317 FRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFT 376
                  +P W+I  A   H W + ++ +++P + ++V  +  ++    S++P+      
Sbjct: 259 -----KSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLC 313

Query: 377 GYLGGLLSDMLIQRGT-SVTLTRKILQSIGFIAPGIALI-GLTAAKSPVMASAWLTLAIG 434
               G L+D L    T S+T  RKI   IG + PGI        + +  +    LTLA  
Sbjct: 314 SIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAAFYLTIIILTLANA 373

Query: 435 MKSFSHSGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVEL--VGSFQGFLL 492
           + S   +G L+N  ++AP++ G + GI+   G    ++ +  AG  +       +    L
Sbjct: 374 VSSGPLAGVLINSLDLAPRFLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFL 433

Query: 493 LTSLLYFLSALFYIIFSTGER 513
           + + +  L  +FY+IF + ER
Sbjct: 434 IMAFVNILCVIFYLIFGSAER 454

[Transport and binding proteins, Anions]. Length = 465

>gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter

 Score =  140 bits (354), Expect = 8e-37
 Identities = 107/408 (26%), Positives = 178/408 (43%), Gaps = 15/408 (3%)

Query: 106 LALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKI 165
           L   +   DR  +S A   L    G S +  G V S+F WGY+V    GG L+D +G + 
Sbjct: 1   LVTVINYLDRANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARK 60

Query: 166 IMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERAR 225
            +A  + +W + T L   A   + ++L  +R ++G AE    P +  +VA WFP +ERA 
Sbjct: 61  TLAVFIVIWGVFTGLQ--AFAGAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERAT 118

Query: 226 AVAIAMGGFTSGNAIGLVL-SPILMSQAGIFG---PFVIFGLSGFLWVLVWLSATSSTPD 281
           AV+I    F S   +G ++  P++      F     F+I G+ G +W ++WL      P 
Sbjct: 119 AVSI----FNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLWL-KFIPDPP 173

Query: 282 RHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFF 341
           +  +    E +YI            K          + LL     W + +   + + G  
Sbjct: 174 QKAKWLTEEEKYI-VVGGLLAEQQGKGPSTPKKYQIKELLKDRRVWGLALGQFLVNIGLG 232

Query: 342 VILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKIL 401
             L+W P Y      + + +A + +++P  V      LGG LSD+L++RG S+   RK  
Sbjct: 233 FFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARK-T 291

Query: 402 QSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYS-GVLHG 460
             I  +   + +        P  A A + L          G+ + + + AP    G+  G
Sbjct: 292 AIIAGLVLSLLMFATNYVNIPYAALALVALGFFGLGAGAIGWAL-ISDNAPGNIAGLTGG 350

Query: 461 ISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYIIF 508
           + N+ G    I+G +  G      GSF G L++ + L  + AL Y++ 
Sbjct: 351 LINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSYLLL 398

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 399

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score =  115 bits (290), Expect = 2e-28
 Identities = 103/409 (25%), Positives = 172/409 (42%), Gaps = 59/409 (14%)

Query: 101 VSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDY 160
           + +L L   L   DR ++S A+  L+   G S S +G++ S+F  GY +  +  G L D 
Sbjct: 1   LLLLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDR 60

Query: 161 YGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQ 220
           +G + ++  G+ L++L + L  +A  +SL  LL  R ++GL  G   PA   ++A WFP 
Sbjct: 61  FGRRRVLLLGLLLFALGSLLLAFA--SSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPP 118

Query: 221 TERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTP 280
            ER RA+ +   GF  G  +G +L  +L    G    F+I  + G L  L+         
Sbjct: 119 KERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLL-------- 170

Query: 281 DRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGF 340
                                                  L        + +A  + S+G+
Sbjct: 171 ---------------------------------------LFLLRLLLLLALAFFLLSFGY 191

Query: 341 FVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKI 400
           + +L+++P+Y   V  +   +A    ++          LGGLLSD L          R++
Sbjct: 192 YGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLG--------RRRL 243

Query: 401 LQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLH 459
           L  IG +   + L+ L  A S  +    L L      F+    L    E+AP +  G   
Sbjct: 244 LLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTAS 303

Query: 460 GISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYIIF 508
           G+ NT G+    LG + AG  ++  G + G  L+ + L  L+AL  ++ 
Sbjct: 304 GLFNTFGSLGGALGPLLAGLLLDTGG-YGGVFLILAALALLAALLLLLL 351

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score =  107 bits (268), Expect = 2e-25
 Identities = 86/373 (23%), Positives = 152/373 (40%), Gaps = 28/373 (7%)

Query: 103 MLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYG 162
           +   A        ++     + L+   G S +  G++ ++F  GY ++    G L D +G
Sbjct: 1   LFLAAFLAGLGRSLLGPALPLYLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRFG 60

Query: 163 GKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTE 222
            + ++  G+ L++L   L  +A+  SL  LL +R + GL  G   PA   ++A WFP  E
Sbjct: 61  RRRVLLIGLLLFALGLLLLLFAS--SLWLLLVLRVLQGLGGGALFPAAAALIADWFPPEE 118

Query: 223 RARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDR 282
           R RA+ +   GF  G A+G +L  +L S  G    F+I  +   L  ++           
Sbjct: 119 RGRALGLLSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILALLAAVLAAL-------- 170

Query: 283 HPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFV 342
                      + R   +        +    + P  +LL + P   +++A  +  + FF 
Sbjct: 171 ----------LLPRPPPESKRPKPAEEAPAPLVPAWKLLLRDPVLWLLLALLLFGFAFFA 220

Query: 343 ILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQ 402
           +L+++P+Y   V  +    A     +   + A    L G LSD L +R       R +L 
Sbjct: 221 LLTYLPLY-QEVLGLSALLAGLLLGLAGLLGAIGRLLLGRLSDRLGRR------RRLLLA 273

Query: 403 SIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGI 461
            +  I   + L  L+  +S +     L L               + ++AP +  G   G+
Sbjct: 274 LLLLILAALGLALLSLTESSLWLLVALLLLGFGAGLVFPALNALVSDLAPKEERGTASGL 333

Query: 462 SNTAGTFAAILGT 474
            NTAG+    LG 
Sbjct: 334 YNTAGSLGGALGP 346

Length = 346

>gnl|CDD|233167 TIGR00881, 2A0104, phosphoglycerate transporter family protein

 Score = 82.0 bits (203), Expect = 8e-17
 Identities = 77/392 (19%), Positives = 143/392 (36%), Gaps = 26/392 (6%)

Query: 109 ALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMA 168
           A     R   ++A+  L    G S++  G++ SSF   Y +S    G++ D    ++ + 
Sbjct: 5   AAYYLVRKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLP 64

Query: 169 WGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVA 228
            G+ L ++      ++  TSL  + A+ A+ G+ +G+  P     V +WF ++ER   V+
Sbjct: 65  IGLILCAIVNLFFGFS--TSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVS 122

Query: 229 IAMGGFTSGNAIGLVLSPILMSQAGIFGP----FVIFGLSGFLWVLVWLSATSSTPDRHP 284
                   G  +   L P+++            F++ G+   +  L+       +P +  
Sbjct: 123 FWNCSHNVGGGL---LPPLVLFGIAELYSWHWVFIVPGIIAIIVSLICFLLLRDSP-QSC 178

Query: 285 QISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVIL 344
            +   E                +     +    + +L     W I +           IL
Sbjct: 179 GLPPAEEMPNEEPDGDAEKKEEELTKKQIF--LQYVLLNKVLWYISLGYVFVYVVRTGIL 236

Query: 345 SWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTG-YLGGLLSDMLIQ-RGTSVTLTRKILQ 402
            W P+Y          +ASW   +   +    G  L G LSD L   R   + +    L 
Sbjct: 237 DWSPLYLTQEKGFSKEKASWAFTLY-ELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMAL- 294

Query: 403 SIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQ--EIAPQYS-GVLH 459
               I   + +  L  A +P+M    L  A+G   +     L+ +   E+AP+ + G   
Sbjct: 295 ----IIVSLLVYWLNPAANPLMDLICL-FALGFLVYG-PQMLIGVIASELAPKKAAGTAA 348

Query: 460 GISNTAGTFAAILGTVGAGFFVELVGSFQGFL 491
           G          IL  +  G+  +  G + G  
Sbjct: 349 GFVGFFAYLGGILAGLPLGYLADGFG-WAGAF 379

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 379

>gnl|CDD|225180 COG2271, UhpC, Sugar phosphate permease [Carbohydrate transport and metabolism]

 Score = 71.5 bits (176), Expect = 3e-13
 Identities = 86/416 (20%), Positives = 153/416 (36%), Gaps = 45/416 (10%)

Query: 119 SVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLAT 178
           ++A+  L    G S++  GI+ S+F   Y VS    G L D    +  MA+G+ L ++  
Sbjct: 49  NLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVN 108

Query: 179 FLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGN 238
            L  +    SL     +  + G  +G+  P     +  WF + ER    +I    + + +
Sbjct: 109 IL--FGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSI----WNTSH 162

Query: 239 AIGLVLSPILMSQAGIF------GPFVIFGLSGFLWVLVWLSATSSTPDR--HPQISKYE 290
            IG  L+P++   A           F   G+   +  L+ L      P     P I +Y 
Sbjct: 163 NIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQSEGLPPIEEYR 222

Query: 291 LEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPT----WSIIVANAMHSWGFFVILSW 346
            + +   ++         K    +  ++  +  +      W + +AN       + I  W
Sbjct: 223 GDPLEIYEE--------EKENEGLTAWQIFVKYVLKNKLIWLLALANVFVYVVRYGINDW 274

Query: 347 MPIYFNFVYHIDLRQASW-FSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIG 405
            P+Y + V    L +A+W  S    + +  T  L G LSD L +        R  +  I 
Sbjct: 275 GPLYLSEVKGFSLVKANWAISLFEVAGLPGT-LLAGWLSDKLFKG------RRGPMALIF 327

Query: 406 FIAPGIALIGLTAAKSPVMASAWLTLAI-GMKSFSHSG--FLVNLQ--EIAP-QYSGVLH 459
            +    +L+    A +    S  L   +  +  F   G   L+ L   E  P + +G   
Sbjct: 328 MLLITASLVLYWLAPN---GSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTAT 384

Query: 460 GISNTAG-TFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYIIFSTGERV 514
           G          A L  +  G+  +  G   GF++L+     L+ L  +     E  
Sbjct: 385 GFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAA-LLAILLLLPVWNAEER 439

Length = 448

>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport

 Score = 63.1 bits (154), Expect = 1e-10
 Identities = 60/265 (22%), Positives = 105/265 (39%), Gaps = 13/265 (4%)

Query: 95  SERVKVVSMLALALALCN-ADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIA 153
           S       +L+  + L +  D   M  A   +S   G      G + S+ L G     + 
Sbjct: 12  SRYQWRAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALF 71

Query: 154 GGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNM 213
            G L D  G + ++ W + L+S+ T L   A  T++  LL +R + GL  G  +P +N +
Sbjct: 72  FGPLADRIGRRRVLLWSILLFSVFTLLCALA--TNVTQLLILRFLAGLGLGGLMPNLNAL 129

Query: 214 VARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGL-SGFLWVLVW 272
           V+ + P+  R  AV +   G+  G A+G  L+  L+   G    F + G+    L +L+ 
Sbjct: 130 VSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLM 189

Query: 273 LSATSS---TPDRHPQISKYELEYILREKQKPLLMG---NKHKPATVIPPFRRLLSK--- 323
                S      + P+  +  +  I  + Q          K    T    F+ L      
Sbjct: 190 RFLPESIDFLVSKRPETVRRIVNAIAPQMQAEAQSALPEQKATQGTKRSVFKALFQGKTA 249

Query: 324 MPTWSIIVANAMHSWGFFVILSWMP 348
             T  + +   M   G + + +W+P
Sbjct: 250 RITVLLWLLYFMLLVGVYFLTNWLP 274

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398

>gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein

 Score = 50.7 bits (122), Expect = 1e-07
 Identities = 31/127 (24%), Positives = 58/127 (45%), Gaps = 2/127 (1%)

Query: 137 GIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMR 196
           G++ + +  G L+     G L D +G K ++  G+ ++ L+T +   A  +++  L+  R
Sbjct: 1   GLLLAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMF--ALSSNITVLIIAR 58

Query: 197 AVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFG 256
            + G     AL A   ++A  +P  ER  A+ +   G   G  +G  L  +L    G   
Sbjct: 59  FLQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRA 118

Query: 257 PFVIFGL 263
           PF+   +
Sbjct: 119 PFLFLAI 125

Length = 141

>gnl|CDD|131385 TIGR02332, HpaX, 4-hydroxyphenylacetate permease

 Score = 52.7 bits (126), Expect = 2e-07
 Identities = 50/184 (27%), Positives = 87/184 (47%), Gaps = 10/184 (5%)

Query: 114 DRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVAL 173
           DR+ +  A + +    G S +  G+  + F   Y++  I    ++   G +  +A  + L
Sbjct: 23  DRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVL 82

Query: 174 WSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGG 233
           W +A+  T +A  T   +L  +R +VG+AE   LP +   +  WFP   RARA A+ M  
Sbjct: 83  WGIASTATMFA--TGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIA 140

Query: 234 FTSGNAIGLVLSPILMSQAGIF---GPFVIFGLSGF----LWVLVWLSATSSTPDRHPQI 286
                A+GL+LS  +++  G+    G   +F L GF    L V+ W      +PD+   +
Sbjct: 141 MPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWF-WLDDSPDKAKWL 199

Query: 287 SKYE 290
            + +
Sbjct: 200 DEED 203

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PMID:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. Length = 412

>gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]

 Score = 52.2 bits (126), Expect = 3e-07
 Identities = 82/421 (19%), Positives = 137/421 (32%), Gaps = 42/421 (9%)

Query: 93  ITSERVKVVSMLALALALC----NADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYL 148
             +   K + +  LALAL          V    + P++   G S   +G + +++  G  
Sbjct: 3   TPATARKPMWLALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVA 62

Query: 149 VSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALP 208
           +       L      + ++   +AL+ ++  L+  A   S   LL  RA+ GLA GV   
Sbjct: 63  LGAPLLALLTGRLERRRLLLGLLALFIVSNLLS--ALAPSFAVLLLARALAGLAHGVFWS 120

Query: 209 AMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLW 268
               + AR  P  +R RA+A+   G T    +G+ L   L     +FG    F     L 
Sbjct: 121 IAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFL---GQLFGWRATFLAIAVLA 177

Query: 269 VLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWS 328
           +L  L      P                                 +    RLL +     
Sbjct: 178 LLALLLLWKLLPPS----------------------EISGSLPGPLRTLLRLLRRPGVLL 215

Query: 329 IIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLI 388
            ++A  +   G F + +++  +   V    +   S               LGG L+D   
Sbjct: 216 GLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLAD--- 272

Query: 389 QRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQ 448
                    R+ L +   +     L       SP +A A L L     S +  G    L 
Sbjct: 273 ------RGPRRALIAALLLLALALLALTFTGASPALALALLFLWGFAFSPALQGLQTRLA 326

Query: 449 EIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYIIF 508
            +AP  + +   ++  A      LG    G  ++ +G              L AL   + 
Sbjct: 327 RLAPDAADLAGSLNVAAFNLGIALGAALGGLVLDALGY--AATGWVGAALLLLALLLALL 384

Query: 509 S 509
           S
Sbjct: 385 S 385

Length = 394

>gnl|CDD|225133 COG2223, NarK, Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

 Score = 50.3 bits (121), Expect = 1e-06
 Identities = 69/359 (19%), Positives = 131/359 (36%), Gaps = 39/359 (10%)

Query: 155 GTLVDYYGGKIIMAWGVALWSLATFLTPWA-ADTSLLALLAMRAVVGLAEG---VALPAM 210
           G L D +GG+      + L  +      +A    S   LL +  ++GLA     V +P  
Sbjct: 70  GFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLGLAGASFAVGMP-- 127

Query: 211 NNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVL 270
               + +FP+ ++  A+ IA  G   G A+  +++P++    G      + G+      +
Sbjct: 128 --NASFFFPKEKQGLALGIAGAG-NLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAI 184

Query: 271 VWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSII 330
             + A     D              R   KP L              + + S   TW + 
Sbjct: 185 AAVLAWLGMNDVPE----------HRASVKPQLP----------AQLKAVFSNKDTWLLS 224

Query: 331 VANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQR 390
           +       GF    +++P+Y    + +    A   + +   + A    LGG LSD +   
Sbjct: 225 LLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRI--G 282

Query: 391 GTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSG----FLVN 446
           G  VTL   +  ++      +  + LT          ++ + + +  F+  G    F + 
Sbjct: 283 GRRVTLAVFVGMALAA---ALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSVFKMI 339

Query: 447 LQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFY 505
              I P+ +G + GI    G        +  G  ++L GS+ G  +L    Y ++ +  
Sbjct: 340 PV-IFPKETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLT 397

Length = 417

>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter

 Score = 47.3 bits (113), Expect = 1e-05
 Identities = 24/79 (30%), Positives = 35/79 (44%)

Query: 128 AHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADT 187
           A   S   SG++ S F  G L+  +  G L D +G K  +  G  L+ +   L  +A   
Sbjct: 40  ACAASTVLSGLIVSIFSVGCLIGSLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGK 99

Query: 188 SLLALLAMRAVVGLAEGVA 206
           S   L+  R +VGL  G  
Sbjct: 100 SFYMLIVGRVIVGLGVGGI 118

Length = 449

>gnl|CDD|233171 TIGR00890, 2A0111, oxalate/formate antiporter family transporter

 Score = 45.5 bits (108), Expect = 4e-05
 Identities = 37/141 (26%), Positives = 57/141 (40%), Gaps = 3/141 (2%)

Query: 123 VPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTP 182
            PL    G   +   I  +  L G  +S   GG L D +G + +   G  L+ L      
Sbjct: 27  PPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFY- 85

Query: 183 WAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGL 242
            A   SL AL     +     G+A     N   +WFP  +R  A  I +GG+  G+ I  
Sbjct: 86  -AIADSLAALYLTYGLASAGVGIAYGIALNTAVKWFPD-KRGLASGIIIGGYGLGSFILS 143

Query: 243 VLSPILMSQAGIFGPFVIFGL 263
            L   +++  G+   F+  G+
Sbjct: 144 PLITSVINLEGVPAAFIYMGI 164

This subfamily belongs to the major facilitator family. Members include the oxalate/formate antiporter of Oxalobacter formigenes, where one substrate is decarboxylated in the cytosol into the other to consume a proton and drive an ion gradient [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 377

>gnl|CDD|234525 TIGR04259, oxa_formateAnti, oxalate/formate antiporter

 Score = 44.4 bits (105), Expect = 1e-04
 Identities = 42/144 (29%), Positives = 64/144 (44%), Gaps = 11/144 (7%)

Query: 124 PLSLAHGWSRSFSGIVQSSFLWGYLVS----PIAGGTLVDYYGGKIIMAWGVALWSLATF 179
           P+   HGW R+    +Q +F    +      PI  G  VD YG +I++ +G  +  L   
Sbjct: 28  PIDATHGWGRA---AIQVAFTLFVVTETWLVPI-EGWFVDKYGPRIVVMFGGIMCGLGWV 83

Query: 180 LTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNA 239
           L  +A   SL AL A   V G+  G           +WFP  +R  A  +   GF +G A
Sbjct: 84  LNAYA--DSLPALYAAAVVAGIGAGAVYGTCVGNALKWFPD-KRGLAAGLTAAGFGAGAA 140

Query: 240 IGLVLSPILMSQAGIFGPFVIFGL 263
           + +V    ++  +G    F+ FGL
Sbjct: 141 LTVVPIAAMIKVSGYQAAFMYFGL 164

This model represents a subgroup of the more broadly defined model TIGR00890, which in turn belongs to the Major Facilitator transporter family. Seed members for this family include the known oxalate/formate antiporter of Oxalobacter formigenes, as well as transporter subunits co-clustered with the two genes of a system that decarboxylates oxalate into formate. In many of these cassettes, two subunits are found rather than one, suggesting the antiporter is sometimes homodimeric, sometimes heterodimeric. Length = 405

>gnl|CDD|129795 TIGR00712, glpT, glycerol-3-phosphate transporter

 Score = 43.7 bits (103), Expect = 2e-04
 Identities = 88/416 (21%), Positives = 165/416 (39%), Gaps = 52/416 (12%)

Query: 123 VPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFL-- 180
           +P  +  G+S+   G   S+    Y  S    G++ D    ++ +  G+ L +    L  
Sbjct: 50  MPYLVEQGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMG 109

Query: 181 -TPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAI-----AMGGF 234
             PWA  +S+  +  +  + G  +G+  P     +  W+ Q+ER   V+I      +GG 
Sbjct: 110 FVPWAT-SSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGG 168

Query: 235 TSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYI 294
                + L ++      A ++ P +   +       +      S     P I +Y  +Y 
Sbjct: 169 IPPLLVLLGMAWFNDWHAALYFPAICAIIVALFAFAMMRDTPQSCG--LPPIEEYRNDYP 226

Query: 295 --LREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFN 352
               EK +  L   +     V+P   +LL     W I +AN       + +L W P Y  
Sbjct: 227 DDYNEKAEQELTAKEIFMQYVLP--NKLL-----WYIAIANVFVYLLRYGVLDWSPTYLK 279

Query: 353 FVYHIDLRQASW------FSAVPWSVMAFTGYLGGLLSDMLIQ--RGTSVTLTRKILQSI 404
            V H  L ++SW      ++ +P ++      L G +SD + +  RG     T     ++
Sbjct: 280 EVKHFALDKSSWAYFLYEYAGIPGTL------LCGWMSDKVFKGNRG----ATGVFFMTL 329

Query: 405 GFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQ--EIAP-QYSGVLHGI 461
             IA  + +  +  A +P++    + + IG   +     L+ L   E+AP + +G   G 
Sbjct: 330 VTIA--VIVYWMNPAGNPLVDMICMIV-IGFLIYGPV-MLIGLHALELAPKKAAGTAAGF 385

Query: 462 SNTAGTFAAILGTVGA----GFFVELVGSFQGFLLLTSLLYFLSALFYIIFSTGER 513
           +   G F  + G+V A    G+ V+  G   GF+++         L  ++    +R
Sbjct: 386 T---GLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKR 438

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar [Transport and binding proteins, Other]. Length = 438

>gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

 Score = 43.0 bits (102), Expect = 3e-04
 Identities = 49/192 (25%), Positives = 74/192 (38%), Gaps = 12/192 (6%)

Query: 104 LALALALCNA-------DRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGT 156
           LAL + LC         D     VA   ++   G   +  G   S+ + G L   + GG 
Sbjct: 13  LALTIGLCFLVALLEGLDLQSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGR 72

Query: 157 LVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVAR 216
           L D  G K I+   VAL+ L +  T  A D     LL  R + G+  G ALP +  + + 
Sbjct: 73  LADRIGRKRILIVSVALFGLFSLATAQAWDFPS--LLVARLLTGVGLGGALPNLIALTSE 130

Query: 217 WFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWV---LVWL 273
                 R  AV++   G   G A+  V+  +    A     F + G+   L V   + WL
Sbjct: 131 AVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPLLMRWL 190

Query: 274 SATSSTPDRHPQ 285
             + +       
Sbjct: 191 PESRAFAQAAGA 202

Length = 406

>gnl|CDD|237051 PRK12307, PRK12307, putative sialic acid transporter; Provisional

 Score = 42.2 bits (99), Expect = 5e-04
 Identities = 42/176 (23%), Positives = 68/176 (38%), Gaps = 14/176 (7%)

Query: 147 YLVSPIAG---GTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAE 203
           ++  P  G   G L D +G K +M W +  +S+ T L+  A+   +L L   R +VG+  
Sbjct: 63  FIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLASGVIMLTL--SRFIVGMGM 120

Query: 204 GVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGL 263
                  +      +P+  +++A A  + GF  GN I     P      G    F +   
Sbjct: 121 AGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFV--- 177

Query: 264 SGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRR 319
            G L VL+ +   +  P+     SK   E  L  K K           ++   F R
Sbjct: 178 -GLLPVLLVIYIRARAPE-----SKEWEEAKLSGKGKHSQSAWSVFSLSMKGLFNR 227

Length = 426

>gnl|CDD|233170 TIGR00886, 2A0108, nitrite extrusion protein (nitrite facilitator)

 Score = 40.4 bits (95), Expect = 0.002
 Identities = 54/298 (18%), Positives = 105/298 (35%), Gaps = 42/298 (14%)

Query: 155 GTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMV 214
           G LVD +G +      + L ++       A   S   LL +R  +G+A G     M   +
Sbjct: 58  GFLVDKFGPRYTTTLSLLLLAIPCLWAGLAV-QSYSVLLLLRLFIGIAGGSFASCM-PWI 115

Query: 215 ARWFPQTERARAVAIAMGGFTSGNAI-GLVLSPIL--------MSQAGIFGPFVIFGLSG 265
           + +FP+  +  A+ +A G    G  +   V+ PI+        +     +G   +   +G
Sbjct: 116 SFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAG 175

Query: 266 FLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVI-----PPFRRL 320
            L +   L          P             K     +  K    +V         +  
Sbjct: 176 ILLLPALLIFFVG--ADTP-----------PGKPATGKLSFKGARWSVGTGALGDQLKVF 222

Query: 321 LSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLG 380
             +  TW + +  ++    F  + S   ++F   + +    A  ++++   + +    LG
Sbjct: 223 RDRH-TWILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLG 281

Query: 381 GLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSF 438
           G +SD L          RK+L S   +A G  L+ L      +++   L + I +   
Sbjct: 282 GAISDRLGGA-------RKLLMSFLGVAMGAFLVVLG-----LVSPLSLAVFIVLFVA 327

[Transport and binding proteins, Anions]. Length = 366

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	521
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	100.0
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	100.0
PRK03545	390	putative arabinose transporter; Provisional	100.0
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	100.0
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	100.0
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	100.0
PRK11663	434	regulatory protein UhpC; Provisional	100.0
KOG2532	466	consensus Permease of the major facilitator superf	100.0
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	100.0
TIGR00893	399	2A0114 d-galactonate transporter.	100.0
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	100.0
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	100.0
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	100.0
PRK10213	394	nepI ribonucleoside transporter; Reviewed	100.0
PLN00028	476	nitrate transmembrane transporter; Provisional	100.0
PRK09705	393	cynX putative cyanate transporter; Provisional	100.0
PRK03699	394	putative transporter; Provisional	100.0
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	100.0
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	100.0
PRK14995	495	methyl viologen resistance protein SmvA; Provision	100.0
PRK10406	432	alpha-ketoglutarate transporter; Provisional	100.0
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	100.0
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	100.0
PRK10091	382	MFS transport protein AraJ; Provisional	100.0
PRK10642	490	proline/glycine betaine transporter; Provisional	100.0
PRK12307	426	putative sialic acid transporter; Provisional	100.0
TIGR00891	405	2A0112 putative sialic acid transporter.	100.0
TIGR00892	455	2A0113 monocarboxylate transporter 1.	100.0
PRK05122	399	major facilitator superfamily transporter; Provisi	100.0
TIGR00897	402	2A0118 polyol permease family. This family of prot	100.0
PRK09952	438	shikimate transporter; Provisional	100.0
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	100.0
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	100.0
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	100.0
PRK10504	471	putative transporter; Provisional	100.0
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	100.0
PRK10133	438	L-fucose transporter; Provisional	100.0
PRK10489	417	enterobactin exporter EntS; Provisional	100.0
TIGR00900	365	2A0121 H+ Antiporter protein.	100.0
PRK15075	434	citrate-proton symporter; Provisional	100.0
PRK03633	381	putative MFS family transporter protein; Provision	100.0
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	100.0
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	100.0
PRK15403	413	multidrug efflux system protein MdtM; Provisional	100.0
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	100.0
PRK03893	496	putative sialic acid transporter; Provisional	100.0
PRK11652	394	emrD multidrug resistance protein D; Provisional	100.0
PRK09874	408	drug efflux system protein MdtG; Provisional	100.0
PRK12382	392	putative transporter; Provisional	100.0
PRK10077	479	xylE D-xylose transporter XylE; Provisional	100.0
PRK11043	401	putative transporter; Provisional	100.0
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	100.0
PRK10473	392	multidrug efflux system protein MdtL; Provisional	100.0
TIGR00895	398	2A0115 benzoate transport.	100.0
PRK11195	393	lysophospholipid transporter LplT; Provisional	100.0
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	100.0
PRK11646	400	multidrug resistance protein MdtH; Provisional	100.0
PRK15011	393	sugar efflux transporter B; Provisional	100.0
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	100.0
PRK11010	491	ampG muropeptide transporter; Validated	100.0
TIGR00898	505	2A0119 cation transport protein.	100.0
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	100.0
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	100.0
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	100.0
PRK10054	395	putative transporter; Provisional	100.0
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	100.0
KOG1330	493	consensus Sugar transporter/spinster transmembrane	100.0
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	100.0
KOG2533	495	consensus Permease of the major facilitator superf	100.0
TIGR00896	355	CynX cyanate transporter. This family of proteins	100.0
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	100.0
PRK11902	402	ampG muropeptide transporter; Reviewed	100.0
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.98
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.97
PRK09528	420	lacY galactoside permease; Reviewed	99.97
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.97
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.97
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.97
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.97
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.97
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.97
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.96
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.96
TIGR00805	633	oat sodium-independent organic anion transporter.	99.96
TIGR00901	356	2A0125 AmpG-related permease.	99.96
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.96
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.96
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.96
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	99.96
KOG0569	485	consensus Permease of the major facilitator superf	99.96
KOG2615	451	consensus Permease of the major facilitator superf	99.95
KOG0254	513	consensus Predicted transporter (major facilitator	99.95
PTZ00207	591	hypothetical protein; Provisional	99.95
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.94
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.94
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	99.94
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.94
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.94
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.94
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	99.93
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.93
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.93
PRK09669	444	putative symporter YagG; Provisional	99.92
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.91
KOG2563	480	consensus Permease of the major facilitator superf	99.91
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.9
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.9
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.9
PRK09848	448	glucuronide transporter; Provisional	99.89
PRK10429	473	melibiose:sodium symporter; Provisional	99.89
PF13347	428	MFS_2: MFS/sugar transport protein	99.89
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.87
PRK11462	460	putative transporter; Provisional	99.87
COG2211	467	MelB Na+/melibiose symporter and related transport	99.85
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	99.85
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	99.84
KOG3626	735	consensus Organic anion transporter [Secondary met	99.82
KOG2325	488	consensus Predicted transporter/transmembrane prot	99.81
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	99.78
KOG2816	463	consensus Predicted transporter ADD1 (major facili	99.75
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	99.72
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	99.67
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.63
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.63
PRK05122	399	major facilitator superfamily transporter; Provisi	99.61
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.6
PRK09528	420	lacY galactoside permease; Reviewed	99.59
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.57
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	99.56
PRK15011	393	sugar efflux transporter B; Provisional	99.56
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.56
PRK12382	392	putative transporter; Provisional	99.55
PRK10642	490	proline/glycine betaine transporter; Provisional	99.55
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.54
PRK09874	408	drug efflux system protein MdtG; Provisional	99.54
PRK10489	417	enterobactin exporter EntS; Provisional	99.54
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.54
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.52
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.52
PRK03633	381	putative MFS family transporter protein; Provision	99.52
PRK03545	390	putative arabinose transporter; Provisional	99.51
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.5
TIGR00893	399	2A0114 d-galactonate transporter.	99.5
PRK09705	393	cynX putative cyanate transporter; Provisional	99.5
PRK10054	395	putative transporter; Provisional	99.49
PRK03893	496	putative sialic acid transporter; Provisional	99.49
PRK03699	394	putative transporter; Provisional	99.48
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.46
PRK11663	434	regulatory protein UhpC; Provisional	99.46
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.46
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.45
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.45
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.44
PRK11010	491	ampG muropeptide transporter; Validated	99.44
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	99.44
KOG3762	618	consensus Predicted transporter [General function	99.43
TIGR00891	405	2A0112 putative sialic acid transporter.	99.41
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.41
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.41
PRK12307	426	putative sialic acid transporter; Provisional	99.4
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.4
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.4
TIGR00900	365	2A0121 H+ Antiporter protein.	99.39
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.38
TIGR00895	398	2A0115 benzoate transport.	99.38
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.38
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.37
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.37
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.36
PRK09952	438	shikimate transporter; Provisional	99.36
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.35
PRK10504	471	putative transporter; Provisional	99.35
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.35
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.34
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.34
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.33
PRK10091	382	MFS transport protein AraJ; Provisional	99.33
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	99.32
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.32
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.32
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.32
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.32
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	99.31
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.31
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.31
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.31
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.3
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	99.3
PRK15075	434	citrate-proton symporter; Provisional	99.29
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.29
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.29
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.29
PRK11043	401	putative transporter; Provisional	99.29
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.28
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.28
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.27
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.25
PRK11902	402	ampG muropeptide transporter; Reviewed	99.25
TIGR00898	505	2A0119 cation transport protein.	99.25
PLN00028	476	nitrate transmembrane transporter; Provisional	99.24
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.24
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.24
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.24
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.22
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.21
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.21
KOG3098	461	consensus Uncharacterized conserved protein [Funct	99.21
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.21
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.2
PRK09848	448	glucuronide transporter; Provisional	99.19
KOG0569	485	consensus Permease of the major facilitator superf	99.17
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	99.17
KOG0637	498	consensus Sucrose transporter and related proteins	99.16
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	99.16
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.16
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.15
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	99.13
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.11
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.11
PRK10133	438	L-fucose transporter; Provisional	99.11
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.09
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.08
PRK10429	473	melibiose:sodium symporter; Provisional	99.07
KOG3810	433	consensus Micronutrient transporters (folate trans	99.06
PRK09669	444	putative symporter YagG; Provisional	99.05
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.05
PF13347	428	MFS_2: MFS/sugar transport protein	99.05
TIGR00901	356	2A0125 AmpG-related permease.	99.04
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.03
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	99.01
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.01
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.0
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.0
KOG1330	493	consensus Sugar transporter/spinster transmembrane	98.98
PTZ00207	591	hypothetical protein; Provisional	98.94
COG0477	338	ProP Permeases of the major facilitator superfamil	98.92
KOG2615	451	consensus Permease of the major facilitator superf	98.91
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	98.91
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	98.91
COG2211	467	MelB Na+/melibiose symporter and related transport	98.89
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.87
TIGR00805	633	oat sodium-independent organic anion transporter.	98.86
PRK11462	460	putative transporter; Provisional	98.86
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.82
KOG3762	618	consensus Predicted transporter [General function	98.81
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	98.79
COG3202	509	ATP/ADP translocase [Energy production and convers	98.78
KOG2532	466	consensus Permease of the major facilitator superf	98.71
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	98.71
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	98.7
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.68
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	98.58
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	98.57
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	98.55
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	98.52
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	98.52
PF12832	77	MFS_1_like: MFS_1 like family	98.44
KOG2533	495	consensus Permease of the major facilitator superf	98.42
KOG0254	513	consensus Predicted transporter (major facilitator	98.35
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	98.33
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	98.28
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	98.26
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	98.23
KOG2816	463	consensus Predicted transporter ADD1 (major facili	98.07
PF12832	77	MFS_1_like: MFS_1 like family	98.0
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	97.9
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	97.9
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	97.87
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	97.73
KOG3880	409	consensus Predicted small molecule transporter inv	97.69
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	97.67
PRK03612	521	spermidine synthase; Provisional	97.63
KOG3097	390	consensus Predicted membrane protein [Function unk	97.62
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	97.59
PRK03612	521	spermidine synthase; Provisional	97.57
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	97.23
KOG2563	480	consensus Permease of the major facilitator superf	97.21
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	97.2
KOG2325	488	consensus Predicted transporter/transmembrane prot	97.19
KOG4830	412	consensus Predicted sugar transporter [Carbohydrat	97.17
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	96.92
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	96.73
KOG3626	735	consensus Organic anion transporter [Secondary met	96.73
KOG3098	461	consensus Uncharacterized conserved protein [Funct	96.67
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	96.53
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	96.47
COG0477	338	ProP Permeases of the major facilitator superfamil	96.46
KOG2601	503	consensus Iron transporter [Inorganic ion transpor	96.09
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	95.54
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	94.43
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	94.31
KOG0637	498	consensus Sucrose transporter and related proteins	94.0
PF01733	309	Nucleoside_tran: Nucleoside transporter; InterPro:	93.5
KOG3880	409	consensus Predicted small molecule transporter inv	93.31
PF01733	309	Nucleoside_tran: Nucleoside transporter; InterPro:	93.0
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	91.71
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	90.72
COG4262	508	Predicted spermidine synthase with an N-terminal m	89.88
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	89.43
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	88.91
KOG3810	433	consensus Micronutrient transporters (folate trans	84.8
KOG2601	503	consensus Iron transporter [Inorganic ion transpor	84.25
COG5336	116	Uncharacterized protein conserved in bacteria [Fun	80.28

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=100.00  E-value=2.2e-42  Score=316.99  Aligned_cols=409  Identities=20%  Similarity=0.251  Sum_probs=329.5

Q ss_pred             ccccchhHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHH
Q 009978           91 EFITSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWG  170 (521)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~  170 (521)
                      +.-+++|++++..+++++...++.+..++.+.|.+.++.++|.+|+|++.+++.+.+.++..+.|.++||.+.|+.+.++
T Consensus        21 ~~y~~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~g  100 (448)
T COG2271          21 KTYKRWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFG  100 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHH
Confidence            34466788899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhhccccchHHHHHHHHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHH--HHh
Q 009978          171 VALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLS--PIL  248 (521)
Q Consensus       171 ~~~~~~~~~l~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~--~~l  248 (521)
                      +++.++..++++++  ++.+.+.+..++.|..+|...|++...+..|+++++||+..++++.+-++|..+.|++.  +++
T Consensus       101 Lilsai~nil~Gfs--~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~  178 (448)
T COG2271         101 LILSAIVNILFGFS--PSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFF  178 (448)
T ss_pred             HHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHH
Confidence            99999999999999  99999999999999999999999999999999999999999999999999999999999  889


Q ss_pred             hhccCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHHhhccccccCCCCC-CCCCCchHHHHHhcchHH
Q 009978          249 MSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHK-PATVIPPFRRLLSKMPTW  327 (521)
Q Consensus       249 ~~~~gw~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  327 (521)
                      ..+.+||..|++.++++++..++.++..+++|++..-.+-+|......+..+   ++++.+ -.....-.+.+++||.+|
T Consensus       179 ~~~~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~GLP~ie~~~~d~~e~~~---~~~~~~~ls~~~i~~~YVL~Nk~iW  255 (448)
T COG2271         179 AFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQSEGLPPIEEYRGDPLEIYE---EEKENEGLTAWQIFVKYVLKNKLIW  255 (448)
T ss_pred             HhccchhHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCHHHhhcCchhhhh---hhccCCCccHHHHHHHHHHcChHHH
Confidence            8888999999999999999999888888999887654333332211100000   001101 011112356789999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHH
Q 009978          328 SIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFI  407 (521)
Q Consensus       328 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~  407 (521)
                      .++++.++.+..-+++..|.|.|+.|..|++...+.+..+.+-.+++.|.+++||++||+.+.+      |.....+..+
T Consensus       256 ~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgr------R~p~~~i~~~  329 (448)
T COG2271         256 LLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGR------RGPMALIFML  329 (448)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccc------cchHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999986432      1233333334


Q ss_pred             HHHHHHHHHhccchh-HHHHHHHHHHHHHHhhhhhhh-HHHHHhhhcc-chhhHHhHHHHHHHH-HHHHHHHHHHHHhhc
Q 009978          408 APGIALIGLTAAKSP-VMASAWLTLAIGMKSFSHSGF-LVNLQEIAPQ-YSGVLHGISNTAGTF-AAILGTVGAGFFVEL  483 (521)
Q Consensus       408 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~g~~~g~~~~~~~~-g~~~~~~~~g~l~~~  483 (521)
                      +..+++..+...++. .......++..++...++... -....|+.|+ ..|++.|+...+.++ |...+....|++.|.
T Consensus       330 ~i~~~~~~~w~~~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~  409 (448)
T COG2271         330 LITASLVLYWLAPNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADT  409 (448)
T ss_pred             HHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEec
Confidence            444444433333322 223333333333333333322 3445577775 889999999999998 999999999999999


Q ss_pred             ccchHHHHHHHHHHHHHHHHHHHHhccC
Q 009978          484 VGSFQGFLLLTSLLYFLSALFYIIFSTG  511 (521)
Q Consensus       484 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~  511 (521)
                      .| |...|++..+.++++.++++...+.
T Consensus       410 ~g-W~g~Fi~~~~~a~l~~lll~~~~~~  436 (448)
T COG2271         410 WG-WDGGFIVLSIAALLAILLLLPVWNA  436 (448)
T ss_pred             CC-CcchHHHHHHHHHHHHHHHHHHHhh
Confidence            87 9999998888888777766655443

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=100.00  E-value=2.1e-40  Score=309.20  Aligned_cols=382  Identities=21%  Similarity=0.249  Sum_probs=316.8

Q ss_pred             chhHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHHH
Q 009978           95 SERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALW  174 (521)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~  174 (521)
                      +..+..++.+.++.|............+|++.+|+|+|..+.|++.|.|.++..++.++...+.||+.||++++..+.++
T Consensus         9 ~~~~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lF   88 (394)
T COG2814           9 KPMWLALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALF   88 (394)
T ss_pred             ccchHHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHH
Confidence            33466777888888988999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhhhccccchHHHHHHHHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHhhhccCc
Q 009978          175 SLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGI  254 (521)
Q Consensus       175 ~~~~~l~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gw  254 (521)
                      .++.++++++  +||+.++++|++.|+..|.+++...++..+..|+++|++++++...+.+++.++|.+++.++.+.+||
T Consensus        89 i~~n~l~alA--p~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GW  166 (394)
T COG2814          89 IVSNLLSALA--PSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGW  166 (394)
T ss_pred             HHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhH
Confidence            9999999999  99999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHHhhccccccCCCCCCCCCCchHHHHHhcchHHHHHHHHH
Q 009978          255 FGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANA  334 (521)
Q Consensus       255 ~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  334 (521)
                      |+.|+..+.++++..+..+...|  |++.+                       +++.....+..+++|+|.++...+..+
T Consensus       167 R~~F~~ia~l~ll~~~~~~~~lP--~~~~~-----------------------~~~~~~~~~~~~~l~~p~v~~~l~~t~  221 (394)
T COG2814         167 RATFLAIAVLALLALLLLWKLLP--PSEIS-----------------------GSLPGPLRTLLRLLRRPGVLLGLLATF  221 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCC--CccCC-----------------------CCCCcchhHHHHHhcCchHHHHHHHHH
Confidence            99999999999998888888777  11111                       111122233458899999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCcccchhHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHH
Q 009978          335 MHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALI  414 (521)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~  414 (521)
                      +...+.+..++|+.+++++..|++....++....++++.++|+.++|++.|| +.+         ..+.....+....++
T Consensus       222 l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~---------~~l~~~~~l~a~~~l  291 (394)
T COG2814         222 LFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPR---------RALIAALLLLALALL  291 (394)
T ss_pred             HHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cch---------hHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999 555         122233233333333


Q ss_pred             HHhc-cchhHHHHHHHHHHHHHHhhhhhhhHHHHHhhhccchhhHHhHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHH
Q 009978          415 GLTA-AKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLL  493 (521)
Q Consensus       415 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~  493 (521)
                      .+.. .++.+......++.................+..|+.++.+.+++....++|..+|..++|.+.|+.| +....+.
T Consensus       292 ~l~~~~~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g-~~~~~~~  370 (394)
T COG2814         292 ALTFTGASPALALALLFLWGFAFSPALQGLQTRLARLAPDAADLAGSLNVAAFNLGIALGAALGGLVLDALG-YAATGWV  370 (394)
T ss_pred             HHHHhcchHHHHHHHHHHHHHHhhhhhhHHHHHhcccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-hHHHHHH
Confidence            3333 3333333333333222222222233333444556999999999999999999999999999999977 9999999


Q ss_pred             HHHHHHHHHHHHHHhccCccc
Q 009978          494 TSLLYFLSALFYIIFSTGERV  514 (521)
Q Consensus       494 ~~~~~~~~~~~~~~~~~~~~~  514 (521)
                      .+++.+++.++.+...+.+++
T Consensus       371 ~a~l~~~a~~~~~~~~~~~~~  391 (394)
T COG2814         371 GAALLLLALLLALLSARKDRR  391 (394)
T ss_pred             HHHHHHHHHHHHHHHHhcccc
Confidence            999888888877766554443

>PRK03545 putative arabinose transporter; Provisional

Probab=100.00  E-value=3.5e-39  Score=317.11  Aligned_cols=383  Identities=15%  Similarity=0.145  Sum_probs=297.2

Q ss_pred             hhHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHHHH
Q 009978           96 ERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWS  175 (521)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~  175 (521)
                      ++|..+..+.+..+..........+.+|.+.+++|.|+.++|++.+.+.+++.+++++.|++.||+|||+++..+.++.+
T Consensus         6 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~   85 (390)
T PRK03545          6 VAWLRVVTLALAAFIFNTTEFVPVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFI   85 (390)
T ss_pred             cchHHHHHHHHHHHHHHhHHHHHHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence            34554555555545444444455667899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhhhccccchHHHHHHHHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHhhhccCch
Q 009978          176 LATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIF  255 (521)
Q Consensus       176 ~~~~l~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gw~  255 (521)
                      ++.++++++  +|++.+++.|+++|++.+...+...+++.|++|+++|+++++++..+.++|..+||++++.+.+.+|||
T Consensus        86 ~~~~~~~~~--~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~  163 (390)
T PRK03545         86 ASHVLSALA--WNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWR  163 (390)
T ss_pred             HHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHH
Confidence            999999998  999999999999999999888999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHHhhccccccCCCCCCCCCCchHHHHHhcchHHHHHHHHHH
Q 009978          256 GPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAM  335 (521)
Q Consensus       256 ~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  335 (521)
                      +.|++.+++.++..+..+...|+.+++++                           ...++.++.+|+|.++...+..++
T Consensus       164 ~~f~~~~~~~~l~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~  216 (390)
T PRK03545        164 TTFLAIGGGALITLLLLIKLLPLLPSEHS---------------------------GSLKSLPLLFRRPALVSLYLLTVV  216 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCCCCCc---------------------------chHHHHHHHHhCcHHHHHHHHHHH
Confidence            99999998877766555554454332110                           011245678899988877666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCCcccchhHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHH
Q 009978          336 HSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIG  415 (521)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  415 (521)
                      ..........+.+.++++..|++..+++...+...++.++++++.+++.||+++|.        ..........+. ...
T Consensus       217 ~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~--------~~~~~~~~~~~~-~~l  287 (390)
T PRK03545        217 VVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGF--------LLIAIALLLVCL-LLL  287 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhH--------HHHHHHHHHHHH-HHH
Confidence            66666666778888888878999999999999999999999999999999988761        222222121221 122


Q ss_pred             HhccchhHHHHHHH-HHHHHHHhhhhhhhHHHHHhhhccchhhHHhHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHH
Q 009978          416 LTAAKSPVMASAWL-TLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLT  494 (521)
Q Consensus       416 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~  494 (521)
                      ....++.+...... +.+.+. ....+.......+..|+.++++.|+++...++|..+||.+.|.+.|..| +...|.+.
T Consensus       288 ~~~~~~~~~~~~~~~l~g~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g-~~~~~~~~  365 (390)
T PRK03545        288 LPAANSEWHLSVLSIFWGIAI-MCIGLAMQVKVLKLAPDATDVAMALFSGIFNIGIGAGALLGNQVSLHLG-LSSIGYVG  365 (390)
T ss_pred             HHHhchHHHHHHHHHHHHHHH-hcchHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-hhHHHHHH
Confidence            22233333333322 233332 2333344555667778899999999999999999999999999999998 89999999


Q ss_pred             HHHHHHHHHHHHHhccCccccccc
Q 009978          495 SLLYFLSALFYIIFSTGERVNFDE  518 (521)
Q Consensus       495 ~~~~~~~~~~~~~~~~~~~~~~~~  518 (521)
                      +++.+++.+......++.....||
T Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~~~  389 (390)
T PRK03545        366 AALALAALVWSILIFRRFPVTLEE  389 (390)
T ss_pred             HHHHHHHHHHHHHHccccchhhcc
Confidence            988888888877776655555444

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=100.00  E-value=6.4e-40  Score=329.30  Aligned_cols=402  Identities=17%  Similarity=0.128  Sum_probs=297.5

Q ss_pred             cchhHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHH
Q 009978           94 TSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVAL  173 (521)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~  173 (521)
                      .+..+..+.++++.+++.+.++..+++..|.+.+++|++..+.|++.+++.+++.+++++.|+++||+|||+++.++.++
T Consensus        24 ~~~~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~  103 (467)
T PRK09556         24 FKPFMQSYLVVFIGYLTMYLIRKNFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLIL  103 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHH
Confidence            44466778888888999999999999999999999999999999999999999999999999999999999999888887


Q ss_pred             HHHHHhhhhh-----ccccchHHHHHHHHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHh
Q 009978          174 WSLATFLTPW-----AADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPIL  248 (521)
Q Consensus       174 ~~~~~~l~~~-----~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l  248 (521)
                      .+++.++.++     +  ++++.+++.|+++|++.+...+...+++.||+|+++|++++|+...+.++|.++++++..++
T Consensus       104 ~~~~~~~~~~~~~~~~--~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~  181 (467)
T PRK09556        104 SAICMLGFGASLGSGS--VSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWG  181 (467)
T ss_pred             HHHHHHHHHHHHhccc--chHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHH
Confidence            7776655443     5  78999999999999999999999999999999999999999999999999999999998877


Q ss_pred             hhcc---CchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHHhhccccccCCCCCCCCCCchH-HHHHhcc
Q 009978          249 MSQA---GIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPF-RRLLSKM  324 (521)
Q Consensus       249 ~~~~---gw~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  324 (521)
                      .+..   +||..|.+.+++.++..++.++..++.|++.+..++++.  ..+..... ....+.++....+.+ +..+++|
T Consensus       182 ~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~  258 (467)
T PRK09556        182 ANYFFDGHVIGMFIFPSIIALIIGFIGLRYGSDSPEELGWGKAEEI--FGEPISEE-DKETESTDMTKWQIFVEYVLKNP  258 (467)
T ss_pred             HHhhccCcchhHHHHHHHHHHHHHHHHHHhCCCChhhcCCCChhhc--ccCccchh-hhccccccCcHHHHHHHHHHcCh
Confidence            6643   699999988888777766666666666654332222210  00000000 000000011111112 3378999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHH
Q 009978          325 PTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSI  404 (521)
Q Consensus       325 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~  404 (521)
                      .+|...+..++......+...|.|.|+++.+|++..++++......++..++.++.|+++||+++|+.       .....
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~-------~~~~~  331 (467)
T PRK09556        259 VIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRA-------LVACI  331 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCch-------HHHHH
Confidence            99999999888888888889999999998899999999999999999999999999999999998732       22111


Q ss_pred             HHHHHHHHHHHHhccchhHHH-HHHHHHHHHHHhhhhhhhHHHHHhhhc-cchhhHHhHHHHHHHH-HHHHHHHHHHHHh
Q 009978          405 GFIAPGIALIGLTAAKSPVMA-SAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTF-AAILGTVGAGFFV  481 (521)
Q Consensus       405 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~-g~~~~~~~~g~l~  481 (521)
                      ........++.+...++.... +..++++.+..+.. ........+..| +.+|++.|+.+...++ |.+++|.+.|++.
T Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~  410 (467)
T PRK09556        332 ALALIIFTLGVYQHATSEYMYLASLFALGFLVFGPQ-LLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIA  410 (467)
T ss_pred             HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhHH-HHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHh
Confidence            111112112222222333322 22222222211111 112234446666 5899999999999997 7799999999999


Q ss_pred             h------------cccchHHHHHHHHHHHHHHHHHHHHhc
Q 009978          482 E------------LVGSFQGFLLLTSLLYFLSALFYIIFS  509 (521)
Q Consensus       482 ~------------~~g~~~~~~~~~~~~~~~~~~~~~~~~  509 (521)
                      |            ..| |...|.+..++.+++.+..+.+.
T Consensus       411 ~~~~~g~~~~~~~~~~-~~~~f~~~~~~~~~~~~~~~~~~  449 (467)
T PRK09556        411 DPTKNGTPIFGYTLTG-WAGTFAALDIAAIGCICLMAIVA  449 (467)
T ss_pred             cccccccccccccccC-hHHHHHHHHHHHHHHHHHHHHHH
Confidence            9            455 89999888888888776666553

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=100.00  E-value=1.7e-38  Score=319.58  Aligned_cols=418  Identities=27%  Similarity=0.492  Sum_probs=325.5

Q ss_pred             ccchhHHHHHHHHHHHHHHhhhhhhhhhhhhhhhh----------------------hhcCCcchhhHHHHHHHHHHHHh
Q 009978           93 ITSERVKVVSMLALALALCNADRVVMSVAIVPLSL----------------------AHGWSRSFSGIVQSSFLWGYLVS  150 (521)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~s~~~~g~~~s~~~~~~~i~  150 (521)
                      ..+.+|.+..++++...+.+.++...+...+.+.+                      +++++..+.|++.+.+.+++.++
T Consensus        13 ~~~~r~~i~~~~~~~~~~~y~dr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~   92 (465)
T TIGR00894        13 FCSFRLFLSFLLHICNVIIIAQRICLSLTMVAMVNKENSTDLACLSAENELDNIKNPNFKWSGALQGLILSSHFYGQIII   92 (465)
T ss_pred             ccCcHHHHHHHHHHHHHHHHHHHhhheEEEEEcccCCCCCCccccccccccccccCCCCCCCHHHhhHHHHHHHHHHHHH
Confidence            35567888888888899999999999999988877                      78999999999999999999999


Q ss_pred             hhhhHHHHhHhcchHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHH
Q 009978          151 PIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIA  230 (521)
Q Consensus       151 ~~~~G~l~dr~Grr~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~  230 (521)
                      +++.|+++||+|||+++.++.++.+++.+++.++...+++.+++.|+++|++.+...+....++.|++|+++|++++++.
T Consensus        93 ~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  172 (465)
T TIGR00894        93 QIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMS  172 (465)
T ss_pred             HcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHH
Confidence            99999999999999999999999988888765442256888999999999999999999999999999999999999999


Q ss_pred             HhhhhhhhHHHHHHHHHhhhcc-CchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHHhhccccccCCCCC
Q 009978          231 MGGFTSGNAIGLVLSPILMSQA-GIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHK  309 (521)
Q Consensus       231 ~~~~~~g~~~g~~l~~~l~~~~-gw~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (521)
                      ..+..+|..+++++++.+.+.. |||+.|++.+++.++..++.+...+++|+.++..+++|.+...+..+      ++.+
T Consensus       173 ~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~~------~~~~  246 (465)
T TIGR00894       173 TSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIHPCISKFEKKYINSSLQ------GQKG  246 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHhhcc------cccC
Confidence            9999999999999999999884 99999999999888777777777777776544444444333322111      1111


Q ss_pred             CCCCCchHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhHhHHHHHHHHHHHHHHHHHHHHHHh
Q 009978          310 PATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQ  389 (521)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~  389 (521)
                      +.+...++++++++|.+|...+..++.....+.+..|+|.|+++.+|++..+.++..++..++..++.++.|++.||+++
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~  326 (465)
T TIGR00894       247 STRQSLPIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKS  326 (465)
T ss_pred             CCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11223468899999999999999999999999999999999999899999999999999999999999999999999987


Q ss_pred             cCCCcchh-HHHHHHHHHHHHHHHHHHHhc-cchhHHHHHHHHHHHHHHhhhhhhhHHHHHhhhccchhhHHhHHHHHHH
Q 009978          390 RGTSVTLT-RKILQSIGFIAPGIALIGLTA-AKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGISNTAGT  467 (521)
Q Consensus       390 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~  467 (521)
                      |+...... ++....++..+.+...+.... ..+....+..+.++.+..+...+.......+..|+..|.+.|+.+..+.
T Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~  406 (465)
T TIGR00894       327 SKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAAFYLTIIILTLANAVSSGPLAGVLINSLDLAPRFLGFIKGITGLPGF  406 (465)
T ss_pred             cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhhhhhhhhhchhhcChhHHHHHHHHHHHHHH
Confidence            65432211 122222222222222222222 2233333333344444333334444455667788899999999999999


Q ss_pred             HHHHHHHHHHHHHhhcc--cchHHHHHHHHHHHHHHHHHHHHhccCccccc
Q 009978          468 FAAILGTVGAGFFVELV--GSFQGFLLLTSLLYFLSALFYIIFSTGERVNF  516 (521)
Q Consensus       468 ~g~~~~~~~~g~l~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  516 (521)
                      +++.++|.+.|.+.+..  +.|...|.+.+++.+++.++.....+.+++++
T Consensus       407 l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~~~~~w  457 (465)
T TIGR00894       407 IGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYLIFGSAERQDW  457 (465)
T ss_pred             HHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHeeeeecceecCC
Confidence            99999999999988753  45888999988888888877777666665544

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=100.00  E-value=1.2e-38  Score=314.47  Aligned_cols=393  Identities=18%  Similarity=0.203  Sum_probs=295.2

Q ss_pred             chhHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHHH
Q 009978           95 SERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALW  174 (521)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~  174 (521)
                      +.+|..+..+++.++++++++...+...|.+.+|+|++..++|++.+++.+++.+++++.|++.||+|||+++..+.++.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~   83 (412)
T TIGR02332         4 KLFRRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLW   83 (412)
T ss_pred             eehhHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHH
Confidence            45678888889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhhhccccchHHHHHHHHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHhhh----
Q 009978          175 SLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMS----  250 (521)
Q Consensus       175 ~~~~~l~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~----  250 (521)
                      .++.++++++  +|++.+++.|+++|++.+...+....++.|++|+++|++++++++.+..+|..+++++++++.+    
T Consensus        84 ~~~~~~~~~~--~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~  161 (412)
T TIGR02332        84 GIASTATMFA--TGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGL  161 (412)
T ss_pred             HHHHHHHHHh--cCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            9999999998  9999999999999999999999999999999999999999999999999999999999998864    


Q ss_pred             --ccCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHHhhcccc---ccCCCCCCC---CCCchHHHHHh
Q 009978          251 --QAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPL---LMGNKHKPA---TVIPPFRRLLS  322 (521)
Q Consensus       251 --~~gw~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~---~~~~~~~~~~~  322 (521)
                        ..|||+.|++.++..++..++.++..||+|++.+...+++.+...+..+...   +..++...+   .....++.++ 
T Consensus       162 ~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  240 (412)
T TIGR02332       162 MALKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKAKWLDEEDKKALKEMIDNDQLTLEQPEGAFAHAAMPQRSMLREIF-  240 (412)
T ss_pred             CCccchhHHHHHHHHHHHHHHHHHhhccCCCcccCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHhc-
Confidence              3699999999988887776666677788876544333333322222111100   000000001   1112344444 


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCcccchhHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHH
Q 009978          323 KMPTWSIIVANAMHSWGFFVILSWMPIYFNFV-YHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKIL  401 (521)
Q Consensus       323 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~  401 (521)
                      +|.+|...+..++.....+.+..|+|.++++. .|.+..+++.......++..++.++.|+++||+++|+       ...
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~-------~~~  313 (412)
T TIGR02332       241 TPAIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERK-------HHT  313 (412)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccH-------HHH
Confidence            68888888888888888889999999999883 3677788898899999999999999999999998762       111


Q ss_pred             HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhhhhhhhHHHHHhhh-ccchhhHHhHHHHHHHHHHHHHHHHHHHH
Q 009978          402 QSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIA-PQYSGVLHGISNTAGTFAAILGTVGAGFF  480 (521)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~~g~~~~~~~~g~l  480 (521)
                       ........+.+............+..+++.........+.......+.. +++++++.|+.+...++|++++|.+.|.+
T Consensus       314 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i  392 (412)
T TIGR02332       314 -ALPYLFAAAGWLLASATDHNLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGIL  392 (412)
T ss_pred             -HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccc
Confidence             1111222222222212222222221111111111111122223334444 47999999999999999999999999999


Q ss_pred             hhcccchHHHHHHHHHHH
Q 009978          481 VELVGSFQGFLLLTSLLY  498 (521)
Q Consensus       481 ~~~~g~~~~~~~~~~~~~  498 (521)
                      .|..|+|...+.+++++.
T Consensus       393 ~~~~g~~~~~~~~~~~~~  410 (412)
T TIGR02332       393 KDATGSFNSGLWFVAALL  410 (412)
T ss_pred             cccCCCCchhHHHHHHHH
Confidence            999888888887776654

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK11663 regulatory protein UhpC; Provisional

Probab=100.00  E-value=2.5e-38  Score=314.73  Aligned_cols=408  Identities=18%  Similarity=0.165  Sum_probs=298.6

Q ss_pred             chhHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHHH
Q 009978           95 SERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALW  174 (521)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~  174 (521)
                      +.++.......+.++..+++...++..+|.+.+++|+|..+.|++.+.+.++..+++++.|+++||+|||+++.++.++.
T Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~   98 (434)
T PRK11663         19 YWRRHILITMYLGYALFYFTRKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIAT   98 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHH
Confidence            34556666677788888888888899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhhhccccchHHHHHHHHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHhhhccCc
Q 009978          175 SLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGI  254 (521)
Q Consensus       175 ~~~~~l~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gw  254 (521)
                      +++.++++++  ++++.+++.|++.|++.|...+...+++.+++|+++|++++++++.+.++|..+++++++++.+.+||
T Consensus        99 ~~~~~~~~~~--~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw  176 (434)
T PRK11663         99 GIINILFGFS--SSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGW  176 (434)
T ss_pred             HHHHHHHHHH--hHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccH
Confidence            9999999888  89999999999999999988999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHHhhccccccCCCCCCCCCCchHH-HHHhcchHHHHHHHH
Q 009978          255 FGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFR-RLLSKMPTWSIIVAN  333 (521)
Q Consensus       255 ~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~  333 (521)
                      |+.|++.+++.++..+...+..+|+|++.......+.+...++..+    +.+.++.+..+.++ ..+++|.+|.+.+..
T Consensus       177 ~~~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (434)
T PRK11663        177 RYGMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWRHDALELAQ----QQEGAGLSRKEILTKYVLLNPYIWLLSFSY  252 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCcccccccccccch----hccccCCChhhhHHHHHhcChHHHHHHHHH
Confidence            9999998887766555555555665543211100000000000000    00000011111122 366788999888887


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCcccchhHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHH
Q 009978          334 AMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIAL  413 (521)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~  413 (521)
                      ++.......+..|+|.|+.+.+|++..+++...+...+++.+++++.|++.||+.+++...   .......+.......+
T Consensus       253 ~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~---~~~~~~~~~~~~~~~~  329 (434)
T PRK11663        253 VLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGP---MNLIFAAGILLSVGSL  329 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccH---HHHHHHHHHHHHHHHH
Confidence            7777778888899999998778999999999999999999999999999999994332100   0011112222222222


Q ss_pred             HHHhccchhHHHHHHHHHHHHHHhhhh-hhhHHHHHhhhc-cchhhHHhHHHHHHHHHHHHHHHHHHHHhhcccchHHHH
Q 009978          414 IGLTAAKSPVMASAWLTLAIGMKSFSH-SGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFL  491 (521)
Q Consensus       414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~  491 (521)
                      ..+.. .+..... ...+..++..... ........+..| +.+|++.|+.++..++|.+++|.+.|++.|..| +...|
T Consensus       330 ~~~~~-~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g-~~~~f  406 (434)
T PRK11663        330 WLMPF-ASYVMQA-ACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWH-WTGFF  406 (434)
T ss_pred             HHccc-ccHHHHH-HHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcc-cHHHH
Confidence            22222 2222211 1222222222211 122334456565 699999999999999999999999999999988 99999


Q ss_pred             HHHHHHHHHHHHHHHHhccCccc
Q 009978          492 LLTSLLYFLSALFYIIFSTGERV  514 (521)
Q Consensus       492 ~~~~~~~~~~~~~~~~~~~~~~~  514 (521)
                      +..+++.+++.+..+...+++++
T Consensus       407 ~~~~~~~~~~~~~~~~~~~~~~~  429 (434)
T PRK11663        407 VVISIAAGISALLLLPFLNAQAP  429 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhch
Confidence            99988887777666555444443

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=100.00  E-value=3.3e-38  Score=308.00  Aligned_cols=386  Identities=32%  Similarity=0.630  Sum_probs=343.6

Q ss_pred             hhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhhhcch
Q 009978          127 LAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVA  206 (521)
Q Consensus       127 ~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~r~l~G~g~~~~  206 (521)
                      .++++|..+.+++.+.+..|+.+++++.|+++||+|.|+++..+.++.++++++..++...+++.+++.|+++|++.|..
T Consensus        66 ~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~~  145 (466)
T KOG2532|consen   66 GEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGVL  145 (466)
T ss_pred             ceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhHH
Confidence            46889999999999999999999999999999999999999999999999999998886667778899999999999999


Q ss_pred             hhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHhhhc-cCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCC
Q 009978          207 LPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQ-AGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQ  285 (521)
Q Consensus       207 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~-~gw~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~  285 (521)
                      +|+...+..+|.|++||++..++...+..+|.+++.+++|++.+. +||+..|++.++++++..++++.+..|+|.+++.
T Consensus       146 ~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~h~~  225 (466)
T KOG2532|consen  146 FPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPSKHPN  225 (466)
T ss_pred             HhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCcccCCC
Confidence            999999999999999999999999999999999999999999998 9999999999999999999999999999999888


Q ss_pred             CchhHHHHHHHhhccccccCCCCCCCCCCchHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhH
Q 009978          286 ISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWF  365 (521)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  365 (521)
                      ..++|.+.+.+...+.      ..++....+++++++++.+|.+.+..++...+.+.+..|.|.|+++++|++..+.|++
T Consensus       226 is~~El~~I~~~k~~~------~~~~~~~vP~~~i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~  299 (466)
T KOG2532|consen  226 ISEKELKYIEKGKSEA------HVKKKPPVPYKAILTSPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFL  299 (466)
T ss_pred             CCHHHHHHHHhccccc------ccCCCCCCCHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHH
Confidence            8888888877654322      1111156799999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHhccc--hhHHHHHHHHHHHHHHhhhhhhh
Q 009978          366 SAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAK--SPVMASAWLTLAIGMKSFSHSGF  443 (521)
Q Consensus       366 ~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  443 (521)
                      .++..+...+..+++|.++||+.+|....+..|+..-.++..+.++.++.+...+  +.+..++.+.+..+..+...++.
T Consensus       300 salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~~~~~~~a~~~l~~~~~~~g~~~~Gf  379 (466)
T KOG2532|consen  300 SALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTSDEHRLLAVILLTIAIGLSGFNISGF  379 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeecCCCcchHHHHHHHHHHHHcccchhhh
Confidence            9999999999999999999999887666677788888899999988888887766  33445556666677777777777


Q ss_pred             HHHHHhhhccchhhHHhHHHHHHHHHHHHHHHHHHHHhh--cccchHHHHHHHHHHHHHHHHHHHHhccCccccccc
Q 009978          444 LVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVE--LVGSFQGFLLLTSLLYFLSALFYIIFSTGERVNFDE  518 (521)
Q Consensus       444 ~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  518 (521)
                      +....+..|++.+.++|+.+.+..+.++++|.+.|.+..  ....|+.+|++.+++.+++.+++.++.+.+++++++
T Consensus       380 ~~~~~~~apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f~s~e~~~w~~  456 (466)
T KOG2532|consen  380 YKNHQDIAPQHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLFFGSGEPAPWTK  456 (466)
T ss_pred             HhhhhhccchHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchheeEeecCcccCccC
Confidence            777777789999999999999999999999999999994  233699999999999999998888887777766643

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=100.00  E-value=1.4e-36  Score=300.79  Aligned_cols=383  Identities=21%  Similarity=0.186  Sum_probs=291.1

Q ss_pred             chhHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHHH
Q 009978           95 SERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALW  174 (521)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~  174 (521)
                      +++|..+.+.++..+.++++....+...|.+.+++|.++.+.|++.+.+.++..+++++.|+++||+|||+++..+.++.
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~   90 (406)
T PRK11551         11 SRLALTIGLCFLVALLEGLDLQSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALF   90 (406)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHH
Confidence            46788888888899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhhhccccchHHHHHHHHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHhhhccCc
Q 009978          175 SLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGI  254 (521)
Q Consensus       175 ~~~~~l~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gw  254 (521)
                      .++.+++.+.  ++++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|..+++.+++.+.+..+|
T Consensus        91 ~~~~~~~~~~--~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  168 (406)
T PRK11551         91 GLFSLATAQA--WDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAW  168 (406)
T ss_pred             HHHHHHHHHh--ccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCH
Confidence            9988888888  89999999999999999999999999999999999999999999999999999999999998888999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHHhhccccccCCCCCCCCCCchHHHHHh---cchHHHHHH
Q 009978          255 FGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLS---KMPTWSIIV  331 (521)
Q Consensus       255 ~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l  331 (521)
                      |+.|++.+++.++..++.....||+++..+...+++                  ++   ....+..++   .+..+...+
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~------------------~~---~~~~~~~~~~~~~~~~~~~~~  227 (406)
T PRK11551        169 RHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGK------------------QR---APVLRALFGEGRATATLLLWI  227 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCcch------------------hh---hhhHHHHhhhhhhhHHHHHHH
Confidence            999999887766665555555566543211100000                  00   001112222   223334444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHH
Q 009978          332 ANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGI  411 (521)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~  411 (521)
                      ..++.....+....|.|.++++ .|+++.+.+...+...++.++++++.|++.||+++++         ..........+
T Consensus       228 ~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~---------~~~~~~~~~~~  297 (406)
T PRK11551        228 SYFFTLIVLYFLLNWLPSLLVG-QGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRR---------VVLLIYAGILA  297 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh-CCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHH---------HHHHHHHHHHH
Confidence            4455555666777889999988 7999999999999999999999999999999999872         22223333333


Q ss_pred             HHHHHhccchhHHHHHHHHHHHHHHhhhhhhhHHHHHhhhc-cchhhHHhHHHHHHHHHHHHHHHHHHHHhhcccchHHH
Q 009978          412 ALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGF  490 (521)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~  490 (521)
                      .++.+...++.+......++.........+.......+..| ++|+++.|+.+....+|..++|.+.|.+.++.+++...
T Consensus       298 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~  377 (406)
T PRK11551        298 SLAALAAAPSFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGV  377 (406)
T ss_pred             HHHHHHhcCcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHH
Confidence            33333333333333222222222222333444555566655 68999999999999999999999999999987767777


Q ss_pred             HHHHHHHHHHHHHHHHHhcc
Q 009978          491 LLLTSLLYFLSALFYIIFST  510 (521)
Q Consensus       491 ~~~~~~~~~~~~~~~~~~~~  510 (521)
                      +.....+.+++.++.+...+
T Consensus       378 ~~~~~~~~~~~~~~~~~~~~  397 (406)
T PRK11551        378 IGASIPVILVAALAALLLVS  397 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHhc
Confidence            77776666666655554433

>TIGR00893 2A0114 d-galactonate transporter

Probab=100.00  E-value=6.8e-37  Score=302.37  Aligned_cols=394  Identities=25%  Similarity=0.416  Sum_probs=303.7

Q ss_pred             HHHHhhhhhhhhhhhhhhhhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHHHHHHHhhhhhcccc
Q 009978          108 LALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADT  187 (521)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~l~~~~~~~  187 (521)
                      +++.+++...++...|.+.+++|.++.+.|++.+++.++..++.++.|+++||+|||+++.++.++.+++.++++++  +
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~--~   80 (399)
T TIGR00893         3 TVINYLDRANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFA--G   80 (399)
T ss_pred             ehHHHHHHHhhhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHH--c
Confidence            45567777889999999999999999999999999999999999999999999999999999999999999999998  8


Q ss_pred             chHHHHHHHHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHhhhccCchhHHHHHHHHHHH
Q 009978          188 SLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFL  267 (521)
Q Consensus       188 ~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gw~~~f~~~~~~~~i  267 (521)
                      +++.+++.|++.|++.+...+...+++.|++|+++|++++++.+...++|..+++.+++.+.+..+||+.|++.+++.++
T Consensus        81 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  160 (399)
T TIGR00893        81 AYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGII  160 (399)
T ss_pred             CHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999888777


Q ss_pred             HHHHHHHhcCCCCCCCCCCchhHHHHHHHhhccccccCCCCCCCCCCchHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Q 009978          268 WVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWM  347 (521)
Q Consensus       268 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  347 (521)
                      ..+..++..++++++++..++++++...+....+  .+.+++++......++.+++|.++...+..++.......+..+.
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (399)
T TIGR00893       161 WGVLWLKFIPDPPQKAKWLTEEEKYIVVGGLLAE--QQGKGPSTPKKYQIKELLKDRRVWGLALGQFLVNIGLGFFLTWF  238 (399)
T ss_pred             HHHHhhheecCCCCccccCCHHHHhhcchhhccc--cccccccCCCccchHHHhcCHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            7666666666655443332222222111111100  01112223344567788999999999999999988999999999


Q ss_pred             HHHHHHHhCCCcccchhHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHhccchhHHHHH
Q 009978          348 PIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASA  427 (521)
Q Consensus       348 ~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  427 (521)
                      |.|+++.+|.+..+.++..+...++..++.++.+++.||+++|+...... ......+..............+..+....
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (399)
T TIGR00893       239 PTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFA-RKTAIIAGLVLSLLMFATNYVNIPYAALA  317 (399)
T ss_pred             HHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHH-HHHHHHHHHHHHHHHHHhccchhHHHHHH
Confidence            99999888999999999999999999999999999999999985221111 01111111111122222222223333333


Q ss_pred             HHHHHHHHHhhhhhhhHHHHHhhhc-cchhhHHhHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHH
Q 009978          428 WLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYI  506 (521)
Q Consensus       428 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  506 (521)
                      ...++.+..+ ..+....+..+..| ++|+++.|+.+...++|..++|.+.|.+.|..|++...+.+.+++.+++.+..+
T Consensus       318 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  396 (399)
T TIGR00893       318 LVALGFFGLG-AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSYL  396 (399)
T ss_pred             HHHHHHhchh-hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHHH
Confidence            3333333333 45556666666666 689999999999999999999999999999887788888888887777666554


Q ss_pred             H
Q 009978          507 I  507 (521)
Q Consensus       507 ~  507 (521)
                      .
T Consensus       397 ~  397 (399)
T TIGR00893       397 L  397 (399)
T ss_pred             H
Confidence            3

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=100.00  E-value=1.4e-36  Score=311.57  Aligned_cols=406  Identities=16%  Similarity=0.158  Sum_probs=296.8

Q ss_pred             cchhHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHH
Q 009978           94 TSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVAL  173 (521)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~  173 (521)
                      .+++|.++++++++.+...++...++..+|.+.++++++..+.+++.+++.++.+++++++|+++||+|||++++++.++
T Consensus       162 ~~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil  241 (742)
T TIGR01299       162 GRFQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSV  241 (742)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence            45678888888888888888888999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhhccccchHHHHHHHHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHhhhcc-
Q 009978          174 WSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQA-  252 (521)
Q Consensus       174 ~~~~~~l~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~-  252 (521)
                      .+++.++++++  ++++.++++|++.|++.++..+...+++.|++|+++|++.++++..++.+|.++++.++..+...+ 
T Consensus       242 ~~i~~ll~afa--~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G  319 (742)
T TIGR01299       242 NGFFAFFSSFV--QGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYG  319 (742)
T ss_pred             HHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            99999999988  899999999999999999999999999999999999999999999999999999999887776433 


Q ss_pred             ------------CchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCC-CchhHHHHHHHhhccccc----------------
Q 009978          253 ------------GIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQ-ISKYELEYILREKQKPLL----------------  303 (521)
Q Consensus       253 ------------gw~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~----------------  303 (521)
                                  +||+.+++.++..++.+ +..++.||+|+.... .+.++.....++......                
T Consensus       320 ~~~~~g~~~~~~gWR~l~~i~~lp~ll~l-l~~~~lPESPrwL~~~gr~~eA~~iL~~i~~~n~~~~~~~~~~~~~~~~~  398 (742)
T TIGR01299       320 WSFQMGSAYQFHSWRVFVIVCAFPCVFAI-GALTFMPESPRFFLENGKHDEAWMILKLIHDTNMRAKGHPEKVFSVNHIK  398 (742)
T ss_pred             chhccccccccccHHHHHHHHHHHHHHHH-HHHHHcCCCHHHHHHCCCHHHHHHHHHHHhcCCCCCcCchhHHHHHHHHH
Confidence                        58888888777665544 445567888764211 111222211111110000                


Q ss_pred             ---cCC-----CCCCCC---------------CCchHHHHHhcc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q 009978          304 ---MGN-----KHKPAT---------------VIPPFRRLLSKM---PTWSIIVANAMHSWGFFVILSWMPIYFNFV---  354 (521)
Q Consensus       304 ---~~~-----~~~~~~---------------~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---  354 (521)
                         ...     +.+...               .+.+++.+++.+   ..+.+++.+++..++++++..|+|.++++.   
T Consensus       399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~tl~l~~~wf~~~~~yygl~~w~P~~~~~~~~~  478 (742)
T TIGR01299       399 TIHQEDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFNPEVREITIKLMGVWFTLSFGYYGLSVWFPDMIKHLQAD  478 (742)
T ss_pred             HhhhhhhhhcccccccchhhcchhhhhhhhhhHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               000     000000               011344555443   356677778888889999999999886541   


Q ss_pred             -h-----------------CCCcc--------------------------------------------------------
Q 009978          355 -Y-----------------HIDLR--------------------------------------------------------  360 (521)
Q Consensus       355 -~-----------------g~~~~--------------------------------------------------------  360 (521)
                       +                 +++..                                                        
T Consensus       479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~  558 (742)
T TIGR01299       479 DYAALTKNFPGDKVAHFSFNFTLENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFDDVTSSNTFFKNCTFIDTLFEN  558 (742)
T ss_pred             HHHhhhccccccchhccccccchhhhhccccccccchhhcccccccccccccccccceeeccccchhhhccchhhhhccc
Confidence             0                 00000                                                        


Q ss_pred             -------------------------------------cchhHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHH
Q 009978          361 -------------------------------------QASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQS  403 (521)
Q Consensus       361 -------------------------------------~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~  403 (521)
                                                           .......+..++.+++.++.+++.||+|||         .++.
T Consensus       559 ~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~l~~i~G~il~g~L~Dr~GRr---------~~l~  629 (742)
T TIGR01299       559 TDFEEYKFIDSEFQNCSFLHNKEGCPIDFDGDDEGAYMIYFVNFLGTLAVLPGNIVSALLMDKIGRL---------RMLA  629 (742)
T ss_pred             cchhhhhhhhhhhhhccccccCCccCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH---------HHHH
Confidence                                                 012234456678899999999999999998         3344


Q ss_pred             HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhhhhhhhHHHHHhhhc-cchhhHHhHHHHHHHHHHHHHHHHHHHHhh
Q 009978          404 IGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVE  482 (521)
Q Consensus       404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~  482 (521)
                      ++.++.+++.+.+....+....++..++..++.....+....+..+..| +.|++++|+.++...+|.+++|.++|.+.+
T Consensus       630 ~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~  709 (742)
T TIGR01299       630 GSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFVG  709 (742)
T ss_pred             HHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555555555544444444433333334344444556667788888888 589999999999999999999999999887


Q ss_pred             cccchHHHHHHHHHHHHHHHHHHHHhccCcc
Q 009978          483 LVGSFQGFLLLTSLLYFLSALFYIIFSTGER  513 (521)
Q Consensus       483 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  513 (521)
                      . + ...+|++++++.++++++.+++++.++
T Consensus       710 ~-~-~~~pf~i~a~~lll~~ll~~~LPET~~  738 (742)
T TIGR01299       710 I-T-KAAPILFASAALACGGLLALKLPDTRG  738 (742)
T ss_pred             h-h-hHHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence            5 3 567788887777777776666654433

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=100.00  E-value=2.6e-36  Score=301.83  Aligned_cols=411  Identities=18%  Similarity=0.243  Sum_probs=286.2

Q ss_pred             ccchhHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHH
Q 009978           93 ITSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVA  172 (521)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~  172 (521)
                      .++++|..+...++.....+.++..++...|.+.++ |+++.+.|++.+.+.++..+++++.|+++||+|||+++.++.+
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~  101 (452)
T PRK11273         23 YRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLI  101 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHH
Confidence            344556666666667777777777788889998888 9999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhhcc--ccchHHHHHHHHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhH-HHHHHHHHhh
Q 009978          173 LWSLATFLTPWAA--DTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNA-IGLVLSPILM  249 (521)
Q Consensus       173 ~~~~~~~l~~~~~--~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~-~g~~l~~~l~  249 (521)
                      +.+++.+++++..  ..+++.+++.|++.|++.+...+.....+.+++|+++|++++++++.+.++|.. .+|+++..+.
T Consensus       102 ~~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~  181 (452)
T PRK11273        102 LAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMA  181 (452)
T ss_pred             HHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            9999888877651  136888899999999999988888888999999999999999999999998864 4555544443


Q ss_pred             hccCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHHhhccccccCCCCCCCCCCchH-HHHHhcchHHH
Q 009978          250 SQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPF-RRLLSKMPTWS  328 (521)
Q Consensus       250 ~~~gw~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  328 (521)
                      ...|||+.|++.+++.++..++.++..+|+|++....++++.+.   +..+.. ..+++++.+..+.+ +.++++|.+|.
T Consensus       182 ~~~gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (452)
T PRK11273        182 WFNDWHAALYMPAFAAILVALFAFAMMRDTPQSCGLPPIEEYKN---DYPDDY-NEKHEQELTAKQIFMQYVLPNKLLWY  257 (452)
T ss_pred             HhccHHHHHHHHHHHHHHHHHHHHHHccCCHhhcCCCChhhhhh---cccccc-ccccCCCccHHHHHHHHHHcChHHHH
Confidence            44599999999988877766666666676655432211111110   000000 00000111111112 34678899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHH
Q 009978          329 IIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIA  408 (521)
Q Consensus       329 ~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~  408 (521)
                      ..+..++.....+....|+|.|+++..|++..+++....+..++.+++.++.|+++||+++++...    ..+....+..
T Consensus       258 ~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~----~~~~~~~l~~  333 (452)
T PRK11273        258 IAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGA----TGVFFMTLVT  333 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcch----HHHHHHHHHH
Confidence            888888888888888899999999988999889998888888999999999999999995432110    0111111111


Q ss_pred             HHHHHHHHhccchhHHHHHHHHHHHHHHhhh-hhhhHHHHHhhhc-cchhhHHhHHHHHHHHHHHH-HHHHHHHHhhccc
Q 009978          409 PGIALIGLTAAKSPVMASAWLTLAIGMKSFS-HSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAIL-GTVGAGFFVELVG  485 (521)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~-~~~~~g~l~~~~g  485 (521)
                      .+...+.+....+.+..... ++..+..... .........+..| +.+|+++|+.+...++|+.+ +|.+.|.+.|..|
T Consensus       334 ~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g  412 (452)
T PRK11273        334 IATIVYWLNPAGNPTVDMAC-MIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG  412 (452)
T ss_pred             HHHHHHHHhcccChHHHHHH-HHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhc
Confidence            12222222222222222221 1112221111 1122233445555 68999999999999988765 7999999999998


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHhccCccc
Q 009978          486 SFQGFLLLTSLLYFLSALFYIIFSTGERV  514 (521)
Q Consensus       486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  514 (521)
                       |...|.+++++.+++++....+.+.+++
T Consensus       413 -~~~~f~~~~~~~~~~~~~~~~~~~~~~~  440 (452)
T PRK11273        413 -WDGGFMVMIGGSILAVILLIVVMIGEKR  440 (452)
T ss_pred             -chHHHHHHHHHHHHHHHHHHHHhccccc
Confidence             8999988888777777666655444443

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=100.00  E-value=2e-36  Score=292.23  Aligned_cols=360  Identities=12%  Similarity=0.082  Sum_probs=267.3

Q ss_pred             HhhhhhhhhhhhhhhhhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHHHHHHHhhhhhccccchH
Q 009978          111 CNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLL  190 (521)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~l~~~~~~~~~~  190 (521)
                      +......+++.+|.+.+|+|+|+.+.|++.+.+.+++.+++++.|+++||+|||+++..+......+.+.....  ++++
T Consensus         3 ~~~~~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~--~~~~   80 (368)
T TIGR00903         3 SQAIWVTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDP--FNYE   80 (368)
T ss_pred             hhHHHHHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHh--ccHH
Confidence            44556688999999999999999999999999999999999999999999999988766655555544333343  6899


Q ss_pred             HHHHHHHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHhhhccCchhHHHHHHHHHHHHHH
Q 009978          191 ALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVL  270 (521)
Q Consensus       191 ~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gw~~~f~~~~~~~~i~~i  270 (521)
                      .+++.|+++|++.+. .+.....++|++|+++|++++++.+.+..+|.++++++++++.+.+|||+.|++.+++.++..+
T Consensus        81 ~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~  159 (368)
T TIGR00903        81 WLLACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGII  159 (368)
T ss_pred             HHHHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHH
Confidence            999999999999986 5566667799999999999999999999999999999999999999999999998888887777


Q ss_pred             HHHHhcCCCCCCCCCCchhHHHHHHHhhccccccCCCCCCCCCCchHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009978          271 VWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIY  350 (521)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  350 (521)
                      +.++..||+|+++++..+.                     ++..+++++++++|.+|.+.+..++....++.+..|+|.|
T Consensus       160 ~~~~~lp~~p~~~~~~~~~---------------------~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~  218 (368)
T TIGR00903       160 LVLAALPALPFQAAEGFGF---------------------KDAVKEFGALAGRKDLWIIGAILGFGVALFDNLAIWLEAA  218 (368)
T ss_pred             HHHHHcCCCCCCCCCCcch---------------------HHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777778776543210000                     0001246789999999999999999999999999999999


Q ss_pred             HHHHhCCCcccchhHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHH
Q 009978          351 FNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLT  430 (521)
Q Consensus       351 ~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (521)
                      +++ .|++.. .+....+..+.+.++   .+++.||..|++.+     ...........++....+....+....+....
T Consensus       219 L~~-~g~s~~-~~~~~~l~~~~g~~g---~~~~~d~~~r~~~r-----~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  288 (368)
T TIGR00903       219 LRP-AGLEDI-AGDAVALAILAGLIG---VAVIPDRVARAGLR-----SIYIRAAALLIAAFFLALAFELNRLALFAFIG  288 (368)
T ss_pred             HHH-CCCChH-HHHHHHHHHHHHHHH---HHHhhHHhhhhhhH-----HHHHHHHHHHHHHHHHHHHHccccHHHHHHHH
Confidence            987 688764 555555555544444   57888887665321     11111122222233333333333333333333


Q ss_pred             HHHHHHhhhhhhhHHHHHhhhc-cchhhHHhHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHH
Q 009978          431 LAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYII  507 (521)
Q Consensus       431 ~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  507 (521)
                      +...+.....+....+..|..| +.||++.|+.+..+++++.++|.+.+.+..  | ....|.+.++..+++.+..++
T Consensus       289 l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~--~-~~~~f~~~~~~~~i~~~~~~~  363 (368)
T TIGR00903       289 IAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS--S-AEAYFTFLAILITIAFAIALL  363 (368)
T ss_pred             HHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc--C-HHHHHHHHHHHHHHHHHHHHh
Confidence            3333333344456677778887 599999999999999999999999998874  4 667777777777777666543

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=100.00  E-value=1.4e-35  Score=290.85  Aligned_cols=368  Identities=15%  Similarity=0.142  Sum_probs=278.3

Q ss_pred             hHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHHHHH
Q 009978           97 RVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSL  176 (521)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~~  176 (521)
                      .|..+..+.+..+............+|++.+++|.++++.|+..+++.++..+++++.|+++||+|||+++..+.++.++
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~   97 (394)
T PRK10213         18 NWSAVFSVAFCVACLIIVEFLPVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTL   97 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHH
Confidence            56655555555555555555666778999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhhhccccchHHHHHHHHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHhhhccCchh
Q 009978          177 ATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFG  256 (521)
Q Consensus       177 ~~~l~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gw~~  256 (521)
                      +.+++.++  ++++.+++.|+++|++.+...+...+++.|++|+++|++++++...+.++|..+||++++.+.+.+|||+
T Consensus        98 ~~~~~~~~--~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~  175 (394)
T PRK10213         98 SCLLVSFA--NSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRN  175 (394)
T ss_pred             HHHHHHHH--ChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHH
Confidence            99999888  9999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHHhhccccccCCCCCCCCCCchHHHHHhcchHHHHHHHHHHH
Q 009978          257 PFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMH  336 (521)
Q Consensus       257 ~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  336 (521)
                      .|++.+++.++..+......||.+++++                           +..++.++.+++|.++...+..++.
T Consensus       176 ~f~~~~~l~~~~~l~~~~~~p~~~~~~~---------------------------~~~~~~~~~l~~~~~~~~~~~~~~~  228 (394)
T PRK10213        176 VFNAAAVMGVLCIFWIIKSLPSLPGEPS---------------------------HQKQNTFRLLQRPGVMAGMIAIFMS  228 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCcccc---------------------------cchhHHHHHhcCHHHHHHHHHHHHH
Confidence            9999887766655444444444321110                           0112345778899988877766666


Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCcccchhHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHH
Q 009978          337 SWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGL  416 (521)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  416 (521)
                      .........+.++++.+.+|+++.+.+......+++..++.++.+++.||.+++         .+...........++..
T Consensus       229 ~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~~---------~l~~~~~~~~~~~~~l~  299 (394)
T PRK10213        229 FAGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSVKL---------ALAGAPLVLAVSALVLT  299 (394)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccchh---------HHHHHHHHHHHHHHHHH
Confidence            666666666764444445799999999999999999999999999999985433         22222222222222222


Q ss_pred             hccchhHHHHHHHHHHHHHHhhhhhhhHHHHHhhhccchhhHHhHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHH
Q 009978          417 TAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSL  496 (521)
Q Consensus       417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~  496 (521)
                      ...++.+......++.+...+...+.......+..|++++++.++.....++|..+|+.+.|.+.|..| +...+...++
T Consensus       300 ~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g-~~~~~~~~~~  378 (394)
T PRK10213        300 LWGSDKIVATGVAIIWGLTFALVPVGWSTWITRSLADQAEKAGSIQVAVIQLANTCGAAIGGYALDNIG-LTSPLMLSGT  378 (394)
T ss_pred             HHhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-hhhHHHHHHH
Confidence            223333333333333333334455555555666667777888888888889999999999999999887 7777777766


Q ss_pred             HHHHHHH
Q 009978          497 LYFLSAL  503 (521)
Q Consensus       497 ~~~~~~~  503 (521)
                      +.++..+
T Consensus       379 ~~~~~~~  385 (394)
T PRK10213        379 LMLLTAL  385 (394)
T ss_pred             HHHHHHH
Confidence            5544433

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=100.00  E-value=6e-36  Score=300.13  Aligned_cols=392  Identities=17%  Similarity=0.140  Sum_probs=284.1

Q ss_pred             hHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHHHHH
Q 009978           97 RVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSL  176 (521)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~~  176 (521)
                      +++.+.......+........+.+..|.+.+++|++..+.+++.+.+.+++.+++++.|+++||+|||+++..+.++.++
T Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~  113 (476)
T PLN00028         34 HMRAFHLSWISFFTCFVSTFAAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAP  113 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence            34555555666667777777888899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhhhccccchHHHHHHHHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHhhh------
Q 009978          177 ATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMS------  250 (521)
Q Consensus       177 ~~~l~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~------  250 (521)
                      +.++++++  ++++.+++.|++.|++.+.. .....++.+++|+++|++++++.....++|..+++.+.+.+..      
T Consensus       114 ~~~~~~~~--~s~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~  190 (476)
T PLN00028        114 AVFCMSLV--SSATGFIAVRFFIGFSLATF-VSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAG  190 (476)
T ss_pred             HHHHHHHh--cCHHHHHHHHHHHHHHHHhh-HHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            99888888  89999999999999998764 4456789999999999999999988877888777766655432      


Q ss_pred             ---ccCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHHhhccccccCCCCCCCCCCchHHHHHhcchHH
Q 009978          251 ---QAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTW  327 (521)
Q Consensus       251 ---~~gw~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (521)
                         ..|||+.|++.+++.++..++.+++.++.|+...    ++.+   +        +.+.++.+....+++.++++++|
T Consensus       191 ~~~~~gWr~~f~i~g~l~l~~~l~~~~~~~~~p~~~~----~~~~---~--------~~~~~~~~~~~~~~~~~~~~~~~  255 (476)
T PLN00028        191 APSFTAWRIAFFVPGLLHIIMGILVLTLGQDLPDGNY----RELK---K--------SGTMPKDSFSKVLRYGVTNYRTW  255 (476)
T ss_pred             CcchhhhHHHHHHHHHHHHHHHHHHHHHcCcCCCCch----hhHH---h--------cCccccccHHHHHHHHHcCchhH
Confidence               2489999999999888776666665544443210    0000   0        00001111123456778899998


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHH
Q 009978          328 SIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFI  407 (521)
Q Consensus       328 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~  407 (521)
                      .+.+..++.......+..+.|.|+.+.+|++..+++.+.++..++..+++++.|+++||+++|....  .|+........
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~--~r~~~~~~~~~  333 (476)
T PLN00028        256 ILALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMR--GRLWALWIVQT  333 (476)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcc--hhHHHHHHHHH
Confidence            8888777666666777888999998878999999999999999999999999999999999863211  12223333333


Q ss_pred             HHHHHHHHHhccchhHHHHHHHHHHHHHHhhhhhhhHHHHHhhhccchhhHHhHHHHHHHHHHHHHHHHHHHHhhcccch
Q 009978          408 APGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSF  487 (521)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~  487 (521)
                      +.++..+.+...++.......+++.........+....+..+..|+++|++.|+.+....+|.+++|.+.+  .+..++|
T Consensus       334 l~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~g~lg~~i~~~l~~--~~~~~~y  411 (476)
T PLN00028        334 LGGVFCIWLGRANSLGAAIVVMILFSIFVQAACGATFGIVPFVSRRSLGVISGLTGAGGNVGAVLTQLLFF--TGSSYST  411 (476)
T ss_pred             HHHHHHHHhcccchHHHHHHHHHHHHHHHHHhhhhhcccCcccChhhchhhhhhhhccccHHHHHHHHHHH--hcCCccH
Confidence            33333333333333333332222222222223334445556677889999999998877777777776654  2223458


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcc
Q 009978          488 QGFLLLTSLLYFLSALFYIIFST  510 (521)
Q Consensus       488 ~~~~~~~~~~~~~~~~~~~~~~~  510 (521)
                      ...|.+.+++.+++.++.++.+.
T Consensus       412 ~~~f~~~~~~~~i~~~~~~~~~~  434 (476)
T PLN00028        412 ETGISLMGVMIIACTLPVAFIHF  434 (476)
T ss_pred             hhHHHHHHHHHHHHHHHHHheec
Confidence            89999998888888877776653

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=100.00  E-value=4.9e-36  Score=294.25  Aligned_cols=357  Identities=13%  Similarity=0.171  Sum_probs=273.8

Q ss_pred             hhhhhhhhhhhhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHHHHHHHhhhhhccccchHHHHHH
Q 009978          116 VVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAM  195 (521)
Q Consensus       116 ~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~  195 (521)
                      ...++.+|.+.+|+|+|..+.|++.+.+.+++.+++++.|+++||+|||+++..+..+++++.++++++  ++++.+++.
T Consensus        26 ~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a--~~~~~ll~~  103 (393)
T PRK09705         26 TSVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELY--PQSALLLSS  103 (393)
T ss_pred             hccchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHC--cchHHHHHH
Confidence            567899999999999999999999999999999999999999999999999999999999999999999  999999999


Q ss_pred             HHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHhhhcc-CchhHHHHHHHHHHHHHHHHHH
Q 009978          196 RAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQA-GIFGPFVIFGLSGFLWVLVWLS  274 (521)
Q Consensus       196 r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~-gw~~~f~~~~~~~~i~~i~~~~  274 (521)
                      |+++|++.+...+....++.+++| ++|+++++++..+..+|..+|+.+++++.++. +||+.+.+.++..++..+..+.
T Consensus       104 r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~  182 (393)
T PRK09705        104 ALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALPAVVALFAWWW  182 (393)
T ss_pred             HHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999997 78999999999999999999999999998875 8999887776665544333333


Q ss_pred             hcCCCCCCCCCCchhHHHHHHHhhccccccCCCCCCCCCCchHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009978          275 ATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFV  354 (521)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  354 (521)
                      ..++.|++++                    ++   +.    ..++.+++|+.|...+..++....+.....|.|.|+++ 
T Consensus       183 ~~~~~~~~~~--------------------~~---~~----~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~lp~~l~~-  234 (393)
T PRK09705        183 QSAREVASSH--------------------KT---TT----TPVRVVFTPRAWTLGVYFGLINGGYASLIAWLPAFYIE-  234 (393)
T ss_pred             HhcCCCcccc--------------------CC---Cc----CCcccccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence            3222221110                    00   00    11244567788877777777777888889999999988 


Q ss_pred             hCCCcccchhHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHh-ccchhHHHHHHHHHHH
Q 009978          355 YHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLT-AAKSPVMASAWLTLAI  433 (521)
Q Consensus       355 ~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  433 (521)
                      +|++..+++...++..++.++++++.+++.||+++|+       ...  .+..+..+....+. ...+... ....+.+.
T Consensus       235 ~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~-------~~~--~~~~l~~~~~~~~~~~~~~~~~-~~~~l~g~  304 (393)
T PRK09705        235 IGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRK-------LLM--LALVLQLVGFCGFIWLPLQLPV-LWAMVCGL  304 (393)
T ss_pred             cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchH-------HHH--HHHHHHHHHHHHHHHccchHHH-HHHHHHHH
Confidence            7999999999999999999999999999999998872       222  22222222222221 1222221 11222333


Q ss_pred             HHHhhhhhhhHHHHHhhhc-cchhhHHhHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHhccCc
Q 009978          434 GMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYIIFSTGE  512 (521)
Q Consensus       434 ~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  512 (521)
                      +.....+...........| +++|+.+|+.+...+++..++|.+.|++.|..|++...|.+.+++.+...++.+.++.++
T Consensus       305 g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (393)
T PRK09705        305 GLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAPAR  384 (393)
T ss_pred             hccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhcccc
Confidence            3333333222233344444 588999999999999999999999999999998889999988888777776665555444


Q ss_pred             c
Q 009978          513 R  513 (521)
Q Consensus       513 ~  513 (521)
                      +
T Consensus       385 ~  385 (393)
T PRK09705        385 F  385 (393)
T ss_pred             c
Confidence            3

>PRK03699 putative transporter; Provisional

Probab=100.00  E-value=1.9e-35  Score=290.76  Aligned_cols=377  Identities=15%  Similarity=0.134  Sum_probs=285.8

Q ss_pred             hhHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHHHH
Q 009978           96 ERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWS  175 (521)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~  175 (521)
                      +|++....+++.+++........++..|++.+++|+|.++.+++.+.+.+++.+++++.|++.||+|||+++..+.++.+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~   83 (394)
T PRK03699          4 NRIKLTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMI   83 (394)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            35666777778888888888899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhhhccccchHHHHHHHHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHhhh-ccCc
Q 009978          176 LATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMS-QAGI  254 (521)
Q Consensus       176 ~~~~l~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~-~~gw  254 (521)
                      ++.++++++  ++++.+++.|+++|++.+...+...+++.|++|+++|+++++..+....+|..++|.+.+.+.. ..||
T Consensus        84 i~~~l~~~~--~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw  161 (394)
T PRK03699         84 LAVAGLMFS--HSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEW  161 (394)
T ss_pred             HHHHHHHHc--chHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccH
Confidence            999999988  8999999999999999998888899999999999999999999999999999999999888764 5799


Q ss_pred             hhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHHhhccccccCCCCCCCCCCchHHHHHhcchHHHHHHHHH
Q 009978          255 FGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANA  334 (521)
Q Consensus       255 ~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  334 (521)
                      |+.|++.+++.++..++.++.  +.|+.+++.++                +   +++..+    . ..++.++...+..+
T Consensus       162 ~~~f~~~~~~~~~~~~~~~~~--~~p~~~~~~~~----------------~---~~~~~~----~-~~~~~~~~~~~~~~  215 (394)
T PRK03699        162 YWVYACIGLVYVAIFILTLFS--EFPALGKHAPK----------------A---DKPVAK----E-KWGIGVLFLAIAAL  215 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHhc--CCccccccCcc----------------c---cCcccc----c-cCChHHHHHHHHHH
Confidence            999999888776655444332  22221110000                0   000000    0 12456677777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCcccchhHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHH
Q 009978          335 MHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALI  414 (521)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~  414 (521)
                      +.....+.+..|.|.|+++.+|+++.+.+.+.+...++..+++++.+++.||+++|+.       ..  ....+..+.+.
T Consensus       216 ~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~-------l~--~~~~~~~~~~~  286 (394)
T PRK03699        216 LYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRI-------LT--VLAGLALVLMY  286 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhH-------HH--HHHHHHHHHHH
Confidence            7777778889999999988889999999999999999999999999999999998831       22  22222222233


Q ss_pred             HHhccchhHHHHHHHHHHHHHHhhhhhhhHHHHHhhhccchhhHHhHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHH
Q 009978          415 GLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLT  494 (521)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~  494 (521)
                      .+...++........+..+...+...+.......+..|+.+++..|......++|..++|.+.|++.|..| +...++..
T Consensus       287 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g-~~~~~~~~  365 (394)
T PRK03699        287 LFVNTDDPSHLLYAILGLGFFSSAIYTTIITLGSQQTKVASPKLVNFILTCGTIGTMLTFVVTSPIVAHFG-LQAALLTA  365 (394)
T ss_pred             HHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhC-chhhhhhh
Confidence            33333333322222222222223333444455566667777888899999999999999999999999988 77887777


Q ss_pred             HHHHHHHHHHHHHhcc
Q 009978          495 SLLYFLSALFYIIFST  510 (521)
Q Consensus       495 ~~~~~~~~~~~~~~~~  510 (521)
                      +++.+++.++.....+
T Consensus       366 ~~~~~~~~~~~~~~~~  381 (394)
T PRK03699        366 NGLYAVVFVMCILLGF  381 (394)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            7777666555444433

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=100.00  E-value=4.5e-35  Score=283.88  Aligned_cols=383  Identities=12%  Similarity=0.103  Sum_probs=287.4

Q ss_pred             ccchhHHHHHHHHHHHHHHhhhhhhhhhhhhhhhh-hhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHH
Q 009978           93 ITSERVKVVSMLALALALCNADRVVMSVAIVPLSL-AHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGV  171 (521)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~  171 (521)
                      .++-.++.+.+..+..++.+..+.++++..+.+.+ ++|+|++|.+++.+++.+++.++.++.|++.||+|.|+++.++.
T Consensus        28 ~~~~a~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~  107 (462)
T PRK15034         28 GKHIARRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFST  107 (462)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHH
Confidence            33445667888888888999999999999999876 89999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhhhcc---ccchHHHHHHHHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHh
Q 009978          172 ALWSLATFLTPWAA---DTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPIL  248 (521)
Q Consensus       172 ~~~~~~~~l~~~~~---~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l  248 (521)
                      ++.++.+++.+++.   .++++.+++.|++.|++ +..++.....+++|+|+++||+++|+.....++|..+++++...+
T Consensus       108 ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~  186 (462)
T PRK15034        108 AILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLV  186 (462)
T ss_pred             HHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            99999998887641   26899999999999998 668899999999999999999999999877778877776666543


Q ss_pred             h-----h-------------ccCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHHhhccccccCCCCCC
Q 009978          249 M-----S-------------QAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKP  310 (521)
Q Consensus       249 ~-----~-------------~~gw~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (521)
                      .     .             ..+||.++++.+++.++..++.++..++.++.+                           
T Consensus       187 i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~~~---------------------------  239 (462)
T PRK15034        187 IFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIASSR---------------------------  239 (462)
T ss_pred             HHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCccccc---------------------------
Confidence            3     2             234777777887777776666666544433211                           


Q ss_pred             CCCCchHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhHhHHHHHHHHHHHHHHHHHHHHHHhc
Q 009978          311 ATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQR  390 (521)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~  390 (521)
                       ...++.++.+|+|+.|.+.+.+++.+..+.++..++|.|.++.+  +.........+..+...+.++++|+++||+|++
T Consensus       240 -~~~~~~~~vlk~~~~Wllslly~~tFG~fvg~s~~lp~~~~~~~--~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~  316 (462)
T PRK15034        240 -ASIADQLPVLQRLHLWLLSLLYLATFGSFIGFSAGFAMLAKTQF--PDVNILRLAFFGPFIGAIARSVGGAISDKFGGV  316 (462)
T ss_pred             -cCHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHc--ChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCch
Confidence             12245668999999999999999999999999999999998854  333333334445677888899999999999988


Q ss_pred             CCCcchhHHHHHHHHHHHHHH-HHHHHhcc---chhHHHHHHHHHHHHHHhhhhhhhHHHHHhhhcc-------------
Q 009978          391 GTSVTLTRKILQSIGFIAPGI-ALIGLTAA---KSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQ-------------  453 (521)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------  453 (521)
                      +       ............. ..+.....   .+.+.....++......+......+-.+....|+             
T Consensus       317 ~-------vl~~~~i~~~i~~~~~~l~lp~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~  389 (462)
T PRK15034        317 R-------VTLINFIFMAIFSALLFLTLPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSD  389 (462)
T ss_pred             H-------HHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccch
Confidence            2       2222221111111 11111111   1233333333333344455555555555555552             


Q ss_pred             ---------chhhHHhHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHhccCcc
Q 009978          454 ---------YSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYIIFSTGER  513 (521)
Q Consensus       454 ---------~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  513 (521)
                               +.|.+.|+....+.+|+++.|.+.|...+..|++...|+...+..++++++.+....++.
T Consensus       390 ~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~y~r~~  458 (462)
T PRK15034        390 EQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLVYGRRK  458 (462)
T ss_pred             hHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence                     678899999999999999999999999999999999999999888888877666544433

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=100.00  E-value=3.9e-36  Score=276.70  Aligned_cols=386  Identities=18%  Similarity=0.227  Sum_probs=322.1

Q ss_pred             cchhHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHH
Q 009978           94 TSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVAL  173 (521)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~  173 (521)
                      ++.+++.+.+..+....++..+.+++++.+.+.+++++|+.|.+++.++..+...+..++.|.+.||+|.|++..++.++
T Consensus         9 k~~~~~~L~~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l   88 (417)
T COG2223           9 KRIARRNLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLL   88 (417)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHH
Confidence            44456777778888888889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhhcc-ccchHHHHHHHHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHhhhcc
Q 009978          174 WSLATFLTPWAA-DTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQA  252 (521)
Q Consensus       174 ~~~~~~l~~~~~-~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~  252 (521)
                      ..+-.+..+++. .++++.+++.+++.|++ |.........++.|+|++++|.++|+.. ..++|..+...++..++...
T Consensus        89 ~~IP~~~~~~a~~~~~~~~ll~~gll~G~~-GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~  166 (417)
T COG2223          89 LLIPCLGLAFAVTYPSTWQLLVIGLLLGLA-GASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAF  166 (417)
T ss_pred             HHHHHHHHHHHccCCchHHHHHHHHHHhcc-cceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHH
Confidence            999988887773 24567999999999999 5558889999999999999999999999 99999999999999999988


Q ss_pred             C---chhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHHhhccccccCCCCCCCCCC-chHHHHHhcchHHH
Q 009978          253 G---IFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVI-PPFRRLLSKMPTWS  328 (521)
Q Consensus       253 g---w~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  328 (521)
                      +   |+.+..+..+..++..++.++...+.|+.+...                        ++.. .+++.++++++.|.
T Consensus       167 g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~------------------------~~~~~~~~~~v~~~~~~W~  222 (417)
T COG2223         167 GFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASV------------------------KPQLPAQLKAVFSNKDTWL  222 (417)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhccc------------------------cccchhHHHHHhcCcchHH
Confidence            9   999999999988888888888877776642211                        1111 56778999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHH
Q 009978          329 IIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIA  408 (521)
Q Consensus       329 ~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~  408 (521)
                      +.+.++....++.++..++|.|+++++|.++.+++.......+.+.+.++++|+++||+|.++       ..........
T Consensus       223 lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~r-------v~~~~f~~~~  295 (417)
T COG2223         223 LSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRR-------VTLAVFVGMA  295 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchh-------HHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999883       2332222222


Q ss_pred             HHHHHHHHhcc-----chhHHHHHHHHHHHHHHhhhhhhhHHHHHhhhccchhhHHhHHHHHHHHHHHHHHHHHHHHhhc
Q 009978          409 PGIALIGLTAA-----KSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVEL  483 (521)
Q Consensus       409 ~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~  483 (521)
                      .+...+.+...     .+.......++....+.+......+-.+....|++.|.+.|+...++.+|++.-|...|...+.
T Consensus       296 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~~~G~v~G~vga~G~lGGf~lp~~~g~~~~~  375 (417)
T COG2223         296 LAAALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPKETGAVTGIVGAIGGLGGFFLPLAFGVSLDL  375 (417)
T ss_pred             HHHHHHHccccccccCcchHHHHHHHHHHHHHhccCcchheeechHHHHhhhhHHHHHHHHhccccccchhHHHHHHHHh
Confidence            22222222221     2334444444555556677777778888889999999999999999999999999999999999


Q ss_pred             ccchHHHHHHHHHHHHHHHHHHHHhccCc
Q 009978          484 VGSFQGFLLLTSLLYFLSALFYIIFSTGE  512 (521)
Q Consensus       484 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  512 (521)
                      +|++...|++...+.+++.+..+....++
T Consensus       376 tg~~~~~f~~~~~~~~~a~v~~~~~y~r~  404 (417)
T COG2223         376 TGSYTGAFMLLLAFYLVALVLTWALYARR  404 (417)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999988888887665554433

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=100.00  E-value=7.8e-35  Score=294.06  Aligned_cols=374  Identities=17%  Similarity=0.146  Sum_probs=287.8

Q ss_pred             hHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHHHHH
Q 009978           97 RVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSL  176 (521)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~~  176 (521)
                      +|..+..+++..++...+.+.++..+|.+.+++|.+..+.+|+.+.+.++..++.+++|+++||+|||++++++.+++.+
T Consensus         4 ~~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~   83 (495)
T PRK14995          4 QWLTLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGL   83 (495)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            56788888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhhhccccchHHHHHHHHHHhhhhcchhhHHHHHHHhcC-CchhhHHHHHHHHhhhhhhhHHHHHHHHHhhhccCch
Q 009978          177 ATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWF-PQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIF  255 (521)
Q Consensus       177 ~~~l~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gw~  255 (521)
                      +.++++++  +|++.++++|+++|+|.+...+.....+.+++ |+++|++++|++.....+|..+||.+++++.+++|||
T Consensus        84 ~~~~~~~a--~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr  161 (495)
T PRK14995         84 ASLAAAFS--PTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWG  161 (495)
T ss_pred             HHHHHHHc--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChH
Confidence            99999999  99999999999999999998888888887776 6789999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHhcCCCCCCCCC-CchhHHHH----------HHHhhcccc-cc------------------C
Q 009978          256 GPFVIFGLSGFLWVLVWLSATSSTPDRHPQ-ISKYELEY----------ILREKQKPL-LM------------------G  305 (521)
Q Consensus       256 ~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~-~~~~~~~~----------~~~~~~~~~-~~------------------~  305 (521)
                      +.|++...+.++..++..+..|++++++.+ .+..+...          ..+...... ..                  .
T Consensus       162 ~~f~i~~~~~~~~~~l~~~~l~~~~~~~~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~~  241 (495)
T PRK14995        162 SVFLINVPIVLVVMGLTARYVPRQAGRRDQPLNLGHALMLIVAILLLVYSAKTALKGFLSLWVTSLTLLTGALLLGLFIR  241 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCChHhHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHH
Confidence            999998888777766666666665433221 11111000          000000000 00                  0


Q ss_pred             CCCCCCCCCchHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhHhHHHHHHHHHHHHHHHHHHH
Q 009978          306 NKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSD  385 (521)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~d  385 (521)
                      .+.+.+.+..+ .+++|+|.++...+..++......+...+.|.|+++.+|+++.+++.......++..++.++.|++.|
T Consensus       242 ~e~~~~~p~~~-~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~  320 (495)
T PRK14995        242 TQLAASRPMID-MRLFTHRIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVS  320 (495)
T ss_pred             HHhcCCCCCcC-HHHhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            01111222223 36889999988888888888888888889999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCcchhHHHHHHHHHHHHHHHHHHH---hccchhHHHH-HHHHHHHHHHhhhhhhhHHHHHhhhccchhhHHhH
Q 009978          386 MLIQRGTSVTLTRKILQSIGFIAPGIALIGL---TAAKSPVMAS-AWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGI  461 (521)
Q Consensus       386 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~  461 (521)
                      |+++|         .....+.....+....+   ....+.+... ..++.+.+.+....+.........++++++.+.++
T Consensus       321 r~g~~---------~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~  391 (495)
T PRK14995        321 RLGLR---------LVATGGMALSALSFYGLAMTDFSTQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAI  391 (495)
T ss_pred             HcCch---------HHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHH
Confidence            99987         22233333333322222   1222333222 23333444443333444445555566799999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhh
Q 009978          462 SNTAGTFAAILGTVGAGFFVE  482 (521)
Q Consensus       462 ~~~~~~~g~~~~~~~~g~l~~  482 (521)
                      .++..++|+.+|+.+.|.+.+
T Consensus       392 ~~~~~~lG~~~G~ai~g~i~~  412 (495)
T PRK14995        392 ETMAYELGAGLGIAIFGLLLS  412 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999998865

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=100.00  E-value=7.8e-35  Score=289.66  Aligned_cols=378  Identities=16%  Similarity=0.120  Sum_probs=266.6

Q ss_pred             hhHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhc---CCcchhhHHH---HHHHHHHHHhhhhhHHHHhHhcchHHHHH
Q 009978           96 ERVKVVSMLALALALCNADRVVMSVAIVPLSLAHG---WSRSFSGIVQ---SSFLWGYLVSPIAGGTLVDYYGGKIIMAW  169 (521)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~s~~~~g~~~---s~~~~~~~i~~~~~G~l~dr~Grr~~~~~  169 (521)
                      +++..+...+++.++++++...++...|.+.++++   .+..+.+...   +...++..++++++|+++||+|||+++.+
T Consensus        19 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~   98 (432)
T PRK10406         19 RRIWAIVGASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLI   98 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence            45566777778899999999999999999999984   4555444444   44455555999999999999999999999


Q ss_pred             HHHHHHHHHhhhhhccccchH--------HHHHHHHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHH
Q 009978          170 GVALWSLATFLTPWAADTSLL--------ALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIG  241 (521)
Q Consensus       170 ~~~~~~~~~~l~~~~~~~~~~--------~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g  241 (521)
                      +.+++++++++++++  +++.        .+++.|+++|++.|...+...+++.|++|+++|+++.++...+...|.+++
T Consensus        99 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~  176 (432)
T PRK10406         99 SVCMMCFGSLVIACL--PGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLA  176 (432)
T ss_pred             HHHHHHHHHHHHhhc--CCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHH
Confidence            999999999999988  6653        588999999999999999999999999999999999999988888888888


Q ss_pred             HHHHHHhh--------hccCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHHhhccccccCCCCCCCCC
Q 009978          242 LVLSPILM--------SQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATV  313 (521)
Q Consensus       242 ~~l~~~l~--------~~~gw~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (521)
                      +.+...+.        +.+|||++|++.+++.++... .....||+++.       +.+            ..     ..
T Consensus       177 ~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~-~~~~~~e~~~~-------~~~------------~~-----~~  231 (432)
T PRK10406        177 LLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVALW-LRRQLDETSQQ-------ETR------------AL-----KE  231 (432)
T ss_pred             HHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHH-HHhcCCCCchH-------HHh------------hh-----cc
Confidence            87765543        257999999987776655432 22223333211       000            00     01


Q ss_pred             CchHHHHHhcchHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCCcccchhHhHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 009978          314 IPPFRRLLSKMPTWSIIVANAMH-SWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGT  392 (521)
Q Consensus       314 ~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~  392 (521)
                      ..++++++++|+.+...+...+. ...++.+..|+|.|+++.+|++..+.+...++..+...++.++.|++.||++||+ 
T Consensus       232 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~-  310 (432)
T PRK10406        232 AGSLKGLWRNRRAFIMVLGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRT-  310 (432)
T ss_pred             cccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchH-
Confidence            12567888888887766655443 5667788899999998878999888888888888888888999999999999882 


Q ss_pred             CcchhHHHHHHHHHHH--HHHHHHH-HhccchhHHHHHHHHHHHHHHhhhhhhhHHHHHhhhc-cchhhHHhHHHHHHHH
Q 009978          393 SVTLTRKILQSIGFIA--PGIALIG-LTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTF  468 (521)
Q Consensus       393 ~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~  468 (521)
                            ... ......  ....... ....++....+....+..+..+...+....+..|..| +.|+++.|+.+...++
T Consensus       311 ------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~  383 (432)
T PRK10406        311 ------SML-CFGSLAALFTVPILSALQNVSSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANA  383 (432)
T ss_pred             ------HHH-HHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHH
Confidence                  121 111111  1111111 1112222222222222222333333445566778887 5899999999988774


Q ss_pred             -HHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHhc
Q 009978          469 -AAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYIIFS  509 (521)
Q Consensus       469 -g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  509 (521)
                       .+...|.+.+.+ +..|.+...+++.++..+++.+..+++.
T Consensus       384 ~~g~~~p~~~~~l-~~~g~~~~~~~~~~~~~~i~~~~~~~l~  424 (432)
T PRK10406        384 LFGGSAEYVALSL-KSIGMETAFFWYVTLMAVVAFLVSLMLH  424 (432)
T ss_pred             HHHhHHHHHHHHH-HHhCCCcHHHHHHHHHHHHHHHHHHHhh
Confidence             345577777754 5566676677776666666666555543

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=100.00  E-value=1e-34  Score=287.21  Aligned_cols=365  Identities=13%  Similarity=0.057  Sum_probs=279.4

Q ss_pred             cchhHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHH
Q 009978           94 TSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVAL  173 (521)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~  173 (521)
                      +++.+.....+.+..+...+....+.+.+|.+.+++|.++.+.++..+.+.+++.+++++.|+++||+|||+++.++.++
T Consensus         8 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~   87 (406)
T PRK15402          8 GRQALLFPLCLVLFEFATYIANDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAF   87 (406)
T ss_pred             hHHHHHHHHHHHHHHHHHHhhhhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHH
Confidence            34556666777777888888888888999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhhccccchHHHHHHHHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHhhhccC
Q 009978          174 WSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAG  253 (521)
Q Consensus       174 ~~~~~~l~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g  253 (521)
                      .+++.+++.++  ++++.+++.|+++|++.+...+...+.+.|++|+++|.+++++......+|..+||.+++.+.+..+
T Consensus        88 ~~~~~~~~~~~--~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~  165 (406)
T PRK15402         88 FILTCLAILLA--QSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLP  165 (406)
T ss_pred             HHHHHHHHHHH--ccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence            99999988888  8999999999999999998888999999999999999999999998888999999999999999899


Q ss_pred             chhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHHhhccccccCCCCCCCCCCchHHHHHhcchHHHHHHHH
Q 009978          254 IFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVAN  333 (521)
Q Consensus       254 w~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  333 (521)
                      ||+.|++.+++.++..+..++..||++++.++.                     .+.++..++++.++++|.++...+..
T Consensus       166 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (406)
T PRK15402        166 WRGMFVLFAALAALSFFGLWRAMPETAGRVGEK---------------------LSLKELGRDYKLVLKNRRFVAGALAL  224 (406)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHhCCCCCcccccc---------------------ccHHHHHHHHHHHHcCcHHHHHHHHH
Confidence            999999988887776665555555543221100                     00011223566888999999888877


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCcccchhHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHH--H
Q 009978          334 AMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPG--I  411 (521)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~--~  411 (521)
                      ++.......+..+.|.++.+.+|+++.+.+.......++..++.++.+++.||+++|+         ....+.+...  .
T Consensus       225 ~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~---------~~~~~~~~~~~g~  295 (406)
T PRK15402        225 GLVSLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRS---------LIRMGLWPMVAGL  295 (406)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH---------HHHHHHHHHHHHH
Confidence            7776666667777899988888999998888877777888899999999999998872         2222222222  2


Q ss_pred             HHHHHh---ccchhHHHHHHHHHHHHHHhhhhhhhHHHHHhhhccchhhHHhHHHHHHHHHHHHHHHHHHHHhhcccchH
Q 009978          412 ALIGLT---AAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQ  488 (521)
Q Consensus       412 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~  488 (521)
                      ..+...   ...+.+......++.....+...+..........++++|++.+.++....++..+|+.+.+.+.+..+.+.
T Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~  375 (406)
T PRK15402        296 LLAALATVISSHAYLWLTAGLSLYAFGIGLANAGLYRLTLFSSDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGGNGL  375 (406)
T ss_pred             HHHHHHHHcccccHHHHHHHHHHHHHHHHHHhhhHHHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHhcccCCchHH
Confidence            222221   11222222222222222222333333334444556899999999999999999999999999999877444


Q ss_pred             HH
Q 009978          489 GF  490 (521)
Q Consensus       489 ~~  490 (521)
                      ..
T Consensus       376 ~~  377 (406)
T PRK15402        376 FN  377 (406)
T ss_pred             HH
Confidence            33

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=100.00  E-value=1.5e-35  Score=290.67  Aligned_cols=365  Identities=18%  Similarity=0.181  Sum_probs=277.2

Q ss_pred             HHHHHHHHhhhhhhhhhhhhhhhhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHHHHHHHhhhhh
Q 009978          104 LALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPW  183 (521)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~l~~~  183 (521)
                      ..+...+.......+++..|.+.+++|+|+.+.|++.+++.++..+++++.|+++||+|||+++.++.++.+++.+++++
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~   87 (377)
T TIGR00890         8 GTVIMCFTSGYVYTWTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAI   87 (377)
T ss_pred             HHHHHHHHhhHHhhhhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHH
Confidence            33344444444667889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccchHHHHHHHHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHhhhccCchhHHHHHHH
Q 009978          184 AADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGL  263 (521)
Q Consensus       184 ~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gw~~~f~~~~~  263 (521)
                      +  ++++.+++.|++.|++.+...+.....+.+++| ++|+++.++...+.++|..+++++.+.+.+..|||+.|++.++
T Consensus        88 ~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~  164 (377)
T TIGR00890        88 A--DSLAALYLTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGI  164 (377)
T ss_pred             H--HHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHH
Confidence            8  999999999999999999888888889999996 6899999999999999998888788788788899999999998


Q ss_pred             HHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHHhhccccccCCCCCCCCCCchHHHHHhcchHHHHHHHHHHHHHHHHHH
Q 009978          264 SGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVI  343 (521)
Q Consensus       264 ~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  343 (521)
                      +.++..+..++..+++++++...                    +.+.+....+.++.+++|.++...+..++........
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (377)
T TIGR00890       165 IFLLVIVLGAFLIGYPPGQLIKT--------------------NIEVSVKDYTVWEMLRTPQFWVLYLSFFLNAVSGLLL  224 (377)
T ss_pred             HHHHHHHHHHHheecCchhcccc--------------------CcccchhhhhHHHHHcCccHHHHHHHHHHHhHHHHHH
Confidence            88877666665555433221100                    0000111124567888999888877777766666666


Q ss_pred             HHHHHHHHHHHhCCCcccchhHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHhccch--
Q 009978          344 LSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKS--  421 (521)
Q Consensus       344 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  421 (521)
                      ..+.+.|.++ +|.+..+.+...+...++..+++++.+++.||+++|+         ....+.....+..+.+...+.  
T Consensus       225 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~---------~~~~~~~~~~~~~~~~~~~~~~~  294 (377)
T TIGR00890       225 IGLYKPYGQS-LGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQK---------TMSIVFGISAVGMAAMLFIPMLN  294 (377)
T ss_pred             HHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---------hhhHHHHHHHHHHHHHHHcccch
Confidence            6777777766 7888888899999999999999999999999999883         222233333333332322221  


Q ss_pred             hHHHHHHHHHHHHHHhhhhhhhHHHHHhhhc-cchhhHHhHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHH
Q 009978          422 PVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFL  500 (521)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~  500 (521)
                      ....+...++.....+...+.......+..| ++++++.|+.+....+|..++|.+.|.+.|..| +...|.+.+++.++
T Consensus       295 ~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~f~~~~~~~~~  373 (377)
T TIGR00890       295 DVLFLATVALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIG-FEYTFIVTGAFALT  373 (377)
T ss_pred             hHHHHHHHHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhc-hhhHHHHHHHHHHH
Confidence            2222122222222222333344455556655 689999999999999999999999999999987 88898888877666


Q ss_pred             HH
Q 009978          501 SA  502 (521)
Q Consensus       501 ~~  502 (521)
                      +.
T Consensus       374 ~~  375 (377)
T TIGR00890       374 SL  375 (377)
T ss_pred             hc
Confidence            54

>PRK10091 MFS transport protein AraJ; Provisional

Probab=100.00  E-value=7.2e-35  Score=285.40  Aligned_cols=373  Identities=17%  Similarity=0.169  Sum_probs=279.4

Q ss_pred             HHHHHHHHHHHhhhhhhhhhhhhhhhhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHHHHHHHhh
Q 009978          101 VSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFL  180 (521)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~l  180 (521)
                      +..+.+..+..........+.+|.+.+++|.+..+.|++.+++.++..++++++|+++||+|||+++.++.++.+++.++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l   84 (382)
T PRK10091          5 ILSLALGTFGLGMAEFGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAM   84 (382)
T ss_pred             HHHHHHHHHHHHhhHHHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHH
Confidence            44455666777777778889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhccccchHHHHHHHHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHhhhccCchhHHHH
Q 009978          181 TPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVI  260 (521)
Q Consensus       181 ~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gw~~~f~~  260 (521)
                      ++++  ++++.+++.|++.|++.+...+....++.|++|+++|++++++...+..+|..+++++++++.+..|||+.|++
T Consensus        85 ~~~~--~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~  162 (382)
T PRK10091         85 FTLS--SSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLL  162 (382)
T ss_pred             HHHh--CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHH
Confidence            9999  99999999999999999988888899999999999999999999999999999999999999998999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHHhhccccccCCCCCCCCCCchHHHHHhcchHHHHHHHHHHHHHHH
Q 009978          261 FGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGF  340 (521)
Q Consensus       261 ~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  340 (521)
                      .+++.++..+..++..||.+++.+.                          +..+. .+.++++..|......++.....
T Consensus       163 ~~~~~~~~~~~~~~~lp~~~~~~~~--------------------------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  215 (382)
T PRK10091        163 IAVFNIAVLASIYFWVPDIRDEAKG--------------------------GLREQ-FHFLRSPAPWLIFAATMFGNAGV  215 (382)
T ss_pred             HHHHHHHHHHHHHHhCCCCCccccc--------------------------CHHHH-HHHhcChHHHHHHHHHHHHHHHH
Confidence            9888776665555555554321100                          00011 24567777777666555555555


Q ss_pred             HHHHHHHHHHHHHHhCCCcccchhHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHh-cc
Q 009978          341 FVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLT-AA  419 (521)
Q Consensus       341 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  419 (521)
                      .....+.+.++.+.+|+++.+.+++.+...++..+++++.+++.||+++++         ....+..+.++..+.+. ..
T Consensus       216 ~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~---------~~~~~~~~~~i~~~~~~~~~  286 (382)
T PRK10091        216 FAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLR---------IAAVTDFIIVLALLMLFFFG  286 (382)
T ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchh---------HHHHHHHHHHHHHHHHHHHH
Confidence            556677788888778999999999999999999999999999999998872         22222233333322221 12


Q ss_pred             chhHHHHH-HHHHHHHHHhhhhhhhHHHHHhhhc-cchhhHHhHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHH
Q 009978          420 KSPVMASA-WLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLL  497 (521)
Q Consensus       420 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~  497 (521)
                      +..+.... ..+.+.+..+...+.......+..+ +.++.+  ..+....+|..+||.+.|.+.|..++|...+.+.+++
T Consensus       287 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~  364 (382)
T PRK10091        287 GMKTASLIFAFICCAGLFALSAPLQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALL  364 (382)
T ss_pred             hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHH
Confidence            22222222 2222333333333333333334333 344443  3467788999999999999999766699999988877


Q ss_pred             HHHHHHHHHHhccCcc
Q 009978          498 YFLSALFYIIFSTGER  513 (521)
Q Consensus       498 ~~~~~~~~~~~~~~~~  513 (521)
                      .++.+.....+.++|+
T Consensus       365 ~~~~~~~~~~~~~~~~  380 (382)
T PRK10091        365 SFAAMSSLLLYGRYKR  380 (382)
T ss_pred             HHHHHHHHHHHhhhhc
Confidence            7777666655554444

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=100.00  E-value=1.6e-34  Score=291.55  Aligned_cols=392  Identities=16%  Similarity=0.111  Sum_probs=266.0

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcCCcch-hhH-----HHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHH
Q 009978           98 VKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSF-SGI-----VQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGV  171 (521)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~g~-----~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~  171 (521)
                      ++.+....++.++++++...++...|.+.++++.+.++ .++     +.++..++..++++++|+++||+|||+++.++.
T Consensus        15 ~~~~~~~~~g~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~   94 (490)
T PRK10642         15 RKAITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITI   94 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence            34566777899999999999999999999998644322 122     247788999999999999999999999999999


Q ss_pred             HHHHHHHhhhhhccccchHH--------HHHHHHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHH
Q 009978          172 ALWSLATFLTPWAADTSLLA--------LLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLV  243 (521)
Q Consensus       172 ~~~~~~~~l~~~~~~~~~~~--------l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~  243 (521)
                      ++++++.++++++  ++++.        ++++|+++|++.|...+...+++.|++|+++|+++.++...+..+|..+|+.
T Consensus        95 ~l~~i~~~~~a~~--~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~  172 (490)
T PRK10642         95 VIMSISTFCIGLI--PSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAG  172 (490)
T ss_pred             HHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999  88764        8899999999999999999999999999999999999999888888888887


Q ss_pred             HHHHhh--------hccCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHHhhccccccCCCCCCCCCCc
Q 009978          244 LSPILM--------SQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIP  315 (521)
Q Consensus       244 l~~~l~--------~~~gw~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (521)
                      +...+.        ..+|||+.|++.+++.++.. +.....||+|+....     .+...+. .     . +...+....
T Consensus       173 ~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~~-~~~~~~~esp~~~~~-----~~~~~~~-~-----~-~~~~~~~~~  239 (490)
T PRK10642        173 VVVLISTIVGEANFLDWGWRIPFFIALPLGIIGL-YLRHALEETPAFQQH-----VDKLEQG-D-----R-EGLQDGPKV  239 (490)
T ss_pred             HHHHHHHhcCHHHhcCccHHHHHHHHHHHHHHHH-HHHHcCCCChhHHHH-----HHhhhhh-c-----c-ccccccccC
Confidence            665543        25799999999776555433 333445555432110     0000000 0     0 000011223


Q ss_pred             hHHHHHhc-chHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhHhHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 009978          316 PFRRLLSK-MPTWS-IIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTS  393 (521)
Q Consensus       316 ~~~~~~~~-~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~  393 (521)
                      ++++++++ ++.+. .....++....++.+..|+|.|+++.+|++..+.++......++..++.++.|++.||+|||+  
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~--  317 (490)
T PRK10642        240 SFKEIATKHWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRP--  317 (490)
T ss_pred             CHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH--
Confidence            45566653 22222 223334455677788889999998878998887777777778888999999999999999982  


Q ss_pred             cchhHHHHHHHH-HHHHHHHHHHHhccchhHHHHHHHHHHHHHHhhhhhhhHHHHHhhhc-cchhhHHhHHHHHHHHHHH
Q 009978          394 VTLTRKILQSIG-FIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAI  471 (521)
Q Consensus       394 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~  471 (521)
                           ....... ..+.....+.....++........++.....+........+..+..| +.|+++.|+.+....+++.
T Consensus       318 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~  392 (490)
T PRK10642        318 -----FVILGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAG  392 (490)
T ss_pred             -----HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHH
Confidence                 1211111 11111111222222222222222222222222333344455556666 6899999987777778889


Q ss_pred             HHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHhccC
Q 009978          472 LGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYIIFSTG  511 (521)
Q Consensus       472 ~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  511 (521)
                      ++|.+.|++.+..+++...+.+..+..+++.+..++.++.
T Consensus       393 ~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~pes  432 (490)
T PRK10642        393 LTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVTMKET  432 (490)
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccc
Confidence            9999999999876655555555555555555555555443

>PRK12307 putative sialic acid transporter; Provisional

Probab=100.00  E-value=9.5e-35  Score=289.58  Aligned_cols=369  Identities=14%  Similarity=0.142  Sum_probs=268.9

Q ss_pred             chhHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHHH
Q 009978           95 SERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALW  174 (521)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~  174 (521)
                      +.+++.+..+.+.++.+.++.....+..|.+.+++|+++.+.+++.+++.++..+++++.|+++||+|||+++.++.++.
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~   93 (426)
T PRK12307         14 RPQKNALFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAY   93 (426)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence            45566677888888889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhhhccccchHHHHHHHHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHhhhccCc
Q 009978          175 SLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGI  254 (521)
Q Consensus       175 ~~~~~l~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gw  254 (521)
                      +++.++++++  ++++.++++|+++|++.+...+....++.|++|+++|+++.++...+..+|.++++.+.+.+.+.++|
T Consensus        94 ~~~~~~~~~~--~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w  171 (426)
T PRK12307         94 SVGTGLSGLA--SGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGW  171 (426)
T ss_pred             HHHHHHHHHH--hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCH
Confidence            9999999998  99999999999999999999999999999999999999999999999999999999999999898999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHHhhccccccCCCCCCCCCCchHHHHHhcchHHHHHHHHH
Q 009978          255 FGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANA  334 (521)
Q Consensus       255 ~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  334 (521)
                      |+.|++..+..++. +......||+++.      ++ +...++ .    ...+...+.....+++++++|.++...+...
T Consensus       172 ~~~f~i~~~~~~~~-~~~~~~~p~~~~~------~~-~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (426)
T PRK12307        172 RAAFFVGLLPVLLV-IYIRARAPESKEW------EE-AKLSGK-G----KHSQSAWSVFSLSMKGLFNRAQFPLTLCVFI  238 (426)
T ss_pred             HHHHHHHHHHHHHH-HHHHHHCCCChHH------HH-hhhhcc-c----cccccchhhhhHHHHHHHhhchHHHHHHHHH
Confidence            99998755433222 1111112222110      00 000000 0    0000111112235678888888765443322


Q ss_pred             H---HHHHHHHHHHHHHHHHHHHhCCCcccchhHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHH
Q 009978          335 M---HSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGI  411 (521)
Q Consensus       335 ~---~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~  411 (521)
                      .   .......+..++|.|+++ .|.++.+.+...+...++..+++++.+++.||+++|+         ....+.....+
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~---------~~~~~~~~~~~  308 (426)
T PRK12307        239 VLFSIFGANWPIFGLLPTYLAG-EGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKK---------TFSIGLLMSFL  308 (426)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH---------HHHHHHHHHHH
Confidence            2   223334467789999988 6999989998889999999999999999999999872         22223222222


Q ss_pred             HHHHHh-ccchhHHHHHHHHHHHHHHh-hhhhhhHHHHHhhhc-cchhhHHhHHHHHHHHHHHHHHHHHHHHhhcccchH
Q 009978          412 ALIGLT-AAKSPVMASAWLTLAIGMKS-FSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQ  488 (521)
Q Consensus       412 ~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~  488 (521)
                      ..+.+. ........+...+++.+... ...+.......+..| +.+|++.|+......+++.++|.+.|++.+..| +.
T Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g-~~  387 (426)
T PRK12307        309 FIFPLFRIPQDNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMG-LG  387 (426)
T ss_pred             HHHHHHHHccccHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHccc-HH
Confidence            222221 11222222222222222221 112233344556666 689999999999999999999999999999887 54


Q ss_pred             H
Q 009978          489 G  489 (521)
Q Consensus       489 ~  489 (521)
                      .
T Consensus       388 ~  388 (426)
T PRK12307        388 A  388 (426)
T ss_pred             H
Confidence            4

>TIGR00891 2A0112 putative sialic acid transporter

Probab=100.00  E-value=7.9e-35  Score=288.49  Aligned_cols=388  Identities=14%  Similarity=0.121  Sum_probs=275.5

Q ss_pred             ccchhHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHH
Q 009978           93 ITSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVA  172 (521)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~  172 (521)
                      .++++|+.+..+.+.++.+.++....++..|.+.+++|.++.+.+++.+++.++..+++++.|+++||+|||+++.++.+
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~   85 (405)
T TIGR00891         6 LTRAQWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIV   85 (405)
T ss_pred             CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence            34567888888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhhccccchHHHHHHHHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHhhhcc
Q 009978          173 LWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQA  252 (521)
Q Consensus       173 ~~~~~~~l~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~  252 (521)
                      +.+++.+++++.  ++++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|..+++.+++.+.+..
T Consensus        86 ~~~~~~~~~~~~--~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~  163 (405)
T TIGR00891        86 LFSAGTLACGFA--PGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVW  163 (405)
T ss_pred             HHHHHHHHHHHh--ccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999888  899999999999999999999999999999999999999999999999999999999999998876


Q ss_pred             C--chhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCch-hHHHHHHHhhccccccCCCCCCCCCCchHHHHHhcc--hHH
Q 009978          253 G--IFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISK-YELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKM--PTW  327 (521)
Q Consensus       253 g--w~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~  327 (521)
                      +  ||+.|++.++..++..+ .....||+++..+..++ ++.....++..+... ..+...+......++..+++  .+.
T Consensus       164 ~~~w~~~f~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  241 (405)
T TIGR00891       164 GDGWRALFFISILPIIFALW-LRKNIPEAEDWKEKHAGKALVRTMVDILYGGEH-RIANIVMTLAAAMVQSAGKRWPTFV  241 (405)
T ss_pred             CccHHHHHHHHHHHHHHHHH-HHHhCCCChhHHHHhhhhhhhhhHHHHHhccch-hhhhhhhhhhHHhhhhhhhhhHHHH
Confidence            6  99999886665554433 33334444321111000 000000000000000 00000000011111111111  122


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHH
Q 009978          328 SIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFI  407 (521)
Q Consensus       328 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~  407 (521)
                      ...+...+..........+.|.|+.+.+|++..+.+.+.+...++.++++++.+++.||+++|+.         ...+..
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~---------~~~~~~  312 (405)
T TIGR00891       242 YLVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKA---------YVCSLL  312 (405)
T ss_pred             HHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhh---------hHHHHH
Confidence            23333333344455667788999988889999999999999999999999999999999998832         122222


Q ss_pred             HH-HHHHHHHhccchhHHHHHHHHHHHHHHhhhhhhhHHHHHhhhc-cchhhHHhHHHHHHHHHHHHHHHHHHHHhhccc
Q 009978          408 AP-GIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVG  485 (521)
Q Consensus       408 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g  485 (521)
                      .. ......+...++.+.......+.........+.......+..| +++|++.|+.+...+++..++|.+.|.+.|..|
T Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g  392 (405)
T TIGR00891       313 AGQLLIIPVFAIGANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLD  392 (405)
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            22 1111122222333332222222222223333444455566666 689999999999999999999999999999988


Q ss_pred             chHHHHHH
Q 009978          486 SFQGFLLL  493 (521)
Q Consensus       486 ~~~~~~~~  493 (521)
                      +|...+..
T Consensus       393 ~~~~~~~~  400 (405)
T TIGR00891       393 EYGTALAS  400 (405)
T ss_pred             ccchhHHh
Confidence            77665544

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=100.00  E-value=4.1e-35  Score=292.60  Aligned_cols=397  Identities=16%  Similarity=0.135  Sum_probs=286.2

Q ss_pred             chhHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHHH
Q 009978           95 SERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALW  174 (521)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~  174 (521)
                      .++|.++..+.+...........++...|.+.+++|.+.++.+++.+.+.++..++.++.|+++||+|||++++.+.++.
T Consensus        15 ~~~w~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~   94 (455)
T TIGR00892        15 GWGWVVLGATFVSIGFSYAFPKAVTVFFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLA   94 (455)
T ss_pred             CcchHHHHHHHHHHHHHHhhhcchhhhHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHH
Confidence            44577777777777666666677888999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhhhccccchHHHHH-HHHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHhhhccC
Q 009978          175 SLATFLTPWAADTSLLALLA-MRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAG  253 (521)
Q Consensus       175 ~~~~~l~~~~~~~~~~~l~~-~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g  253 (521)
                      +++.++++++  ++++.+++ .|++.|++.+...+...+++.++++ ++|+++.++.+.+..+|..++|++++.+.+.+|
T Consensus        95 ~~~~~~~~~~--~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~g  171 (455)
T TIGR00892        95 SLGMILASFS--SNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFG  171 (455)
T ss_pred             HHHHHHHHHh--hhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhC
Confidence            9999998888  88888765 5799999998777777888999995 789999999999999999999999999999999


Q ss_pred             chhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHHhhccccccCC-C--CCCCCCCchHHHHHhcchHHHHH
Q 009978          254 IFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGN-K--HKPATVIPPFRRLLSKMPTWSII  330 (521)
Q Consensus       254 w~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~  330 (521)
                      ||+.|++.+++.++..+..++..++.+..+....+++ +.  .+......... .  .++.....++ +++++|.++...
T Consensus       172 wr~~f~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  247 (455)
T TIGR00892       172 WRGSFLILGGLLLHCCVCGALMRPVGPSQRVSKSKSK-EG--LPPDGSTKKLSKKSTAEKINRFLDF-SLFTHRGFLVYL  247 (455)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhCCCCccccccccccc-cc--CCCCCccccccccchhhhhhhhcch-HHhcCchHHHHH
Confidence            9999999998877665554444433221110000000 00  00000000000 0  0000011112 577899999888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHH
Q 009978          331 VANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPG  410 (521)
Q Consensus       331 l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~  410 (521)
                      +..++...+......++|.|+++ .|++..+++++.++.+++.++++++.+++.||...++.     +...+..+....+
T Consensus       248 ~~~~l~~~~~~~~~~~l~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~-----~~~~~~~~~~~~~  321 (455)
T TIGR00892       248 SGNVIMFLGFFAPIIFLVPYAKD-KGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPH-----VQYLFSFALLFNG  321 (455)
T ss_pred             HHHHHHHHHccchHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHH-----HHHHHHHHHHHHH
Confidence            88887777777888899999987 79999999999999999999999999999997321100     1222233333333


Q ss_pred             HHHHHHhccchhHHHHHHHHHHHHHHhhhhhhhHHHHHhhh-ccchhhHHhHHHHHHHHHHHHHHHHHHHHhhcccchHH
Q 009978          411 IALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIA-PQYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQG  489 (521)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~  489 (521)
                      +..+.....++.+..+...++.+...+...+.......+.. +++++++.|+++...++|.++||.+.|.+.|..|+|..
T Consensus       322 l~~ll~~~~~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~  401 (455)
T TIGR00892       322 LTHLLCALAGDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKY  401 (455)
T ss_pred             HHHHHHHHhchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcch
Confidence            33333333344443333333322233333444445555554 46899999999999999999999999999998877888


Q ss_pred             HHHHHHHHHHHHHHH
Q 009978          490 FLLLTSLLYFLSALF  504 (521)
Q Consensus       490 ~~~~~~~~~~~~~~~  504 (521)
                      .|.+.+++.+++.+.
T Consensus       402 ~f~~~~~~~li~~~~  416 (455)
T TIGR00892       402 IFYASGSIVVSAGLF  416 (455)
T ss_pred             HHHHhhHHHHHHHHH
Confidence            888888776666553

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=100.00  E-value=1.1e-33  Score=279.23  Aligned_cols=373  Identities=20%  Similarity=0.182  Sum_probs=265.8

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhhhh-hhhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHHHHHH
Q 009978           99 KVVSMLALALALCNADRVVMSVAIVP-LSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLA  177 (521)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~~~  177 (521)
                      +.+..+.+..++..+...+..+.+|. +.+++|.|+.+.|++.+++.++..+++++.|+++||+|||+++..+.++.+++
T Consensus        15 ~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~   94 (399)
T PRK05122         15 LRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALS   94 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHH
Confidence            34555666777777778888888887 56789999999999999999999999999999999999999999999988877


Q ss_pred             Hhhhhhcc------ccchHHHHHHHHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHhhhc
Q 009978          178 TFLTPWAA------DTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQ  251 (521)
Q Consensus       178 ~~l~~~~~------~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~  251 (521)
                      .+.+.++.      ..+++.+++.|+++|++.+...+...+++.|++|+++|++++++......+|.++|+.+++.+.+.
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~  174 (399)
T PRK05122         95 GLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHW  174 (399)
T ss_pred             HHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHc
Confidence            66554431      025678899999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHHhhccccccCCCCCCCCCCchHHHHHhcchHHHHHH
Q 009978          252 AGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIV  331 (521)
Q Consensus       252 ~gw~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  331 (521)
                      +||+..+++.++..++..+.. .   +.|+.++..  +                       ...++++.++  .++....
T Consensus       175 ~g~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~--~-----------------------~~~~~~~~~~--~~~~~~~  223 (399)
T PRK05122        175 GGLAGLGLLIMLLALLGLLLA-R---PRPAVPPVK--G-----------------------ERLPFRRVLG--RVWPYGM  223 (399)
T ss_pred             ccHHHHHHHHHHHHHHHHHHH-h---cCCCCCCCC--c-----------------------cchhHHHHHH--HHHHHHH
Confidence            999998887666544332222 1   112111100  0                       0012223332  2222223


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHH
Q 009978          332 ANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGI  411 (521)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~  411 (521)
                      ...+....+.....+.+.|+.+ .|+  .+.+.......++.++++++.+++.||+++|+         ....+....++
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~---------~~~~~~~~~~~  291 (399)
T PRK05122        224 GLALASIGFGTIATFITLYYAA-RGW--DGAALALTLFGVAFVGARLLFGNLINRLGGLR---------VAIVSLLVEIL  291 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-ccc--ccchHHHHHHHHHHHHHHHHHHHHHHHhccHH---------HHHHHHHHHHH
Confidence            3333445556667788888876 465  34566667788888999999999999998772         22233333333


Q ss_pred             HHHHHhccchhHHHHHHHH-HHHHHHhhhhhhhHHH-HHhhhccchhhHHhHHHHHHHHHHHHHHHHHHHHhhcccchHH
Q 009978          412 ALIGLTAAKSPVMASAWLT-LAIGMKSFSHSGFLVN-LQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQG  489 (521)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~  489 (521)
                      ....+...++.+..+...+ .+.+.. ...+..... ....+++++|++.|+++....+|..+++.+.|.+.+..| ++.
T Consensus       292 ~~~~~~~~~~~~~~~~~~~l~G~~~~-~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~  369 (399)
T PRK05122        292 GLLLLWLAPSPWMALIGAALTGFGFS-LVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFG-YPS  369 (399)
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHhHH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-HHH
Confidence            3333333344433333222 333332 333333333 344445799999999999999999999999999999887 899


Q ss_pred             HHHHHHHHHHHHHHHHHHhccCccccc
Q 009978          490 FLLLTSLLYFLSALFYIIFSTGERVNF  516 (521)
Q Consensus       490 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  516 (521)
                      .+++.+++.+++.++...++++++++.
T Consensus       370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  396 (399)
T PRK05122        370 IFLAAALAALLGLALTWLLYRRAPRAV  396 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccccccC
Confidence            999988888888777766665555443

>TIGR00897 2A0118 polyol permease family

Probab=100.00  E-value=2e-33  Score=276.99  Aligned_cols=377  Identities=14%  Similarity=0.099  Sum_probs=271.2

Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhhhhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHHHHHHHhhhh
Q 009978          103 MLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTP  182 (521)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~l~~  182 (521)
                      ...++.+............++.+.+++|.++.+.|++.+.+.++..+++++.|+++||+||||++..+.++.+++.+++.
T Consensus        17 ~~~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~   96 (402)
T TIGR00897        17 WGYIGVVVFMTGDGLEQGWLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFI   96 (402)
T ss_pred             HHHHHHHHHHHhhhhHHHhHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444566777789999999999999999999999999999999999999999999999888876542


Q ss_pred             h-cc-ccchHHHHHHHHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhh-HHHHHHHHHhhhccCchhHHH
Q 009978          183 W-AA-DTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGN-AIGLVLSPILMSQAGIFGPFV  259 (521)
Q Consensus       183 ~-~~-~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~-~~g~~l~~~l~~~~gw~~~f~  259 (521)
                      . .. .++++.+++.|++.|++.+...+...+.+.+++|+++|++++|+.+.+.++|. .++|++++++.+.+||+..++
T Consensus        97 ~~~~~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~  176 (402)
T TIGR00897        97 VFGLGHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLW  176 (402)
T ss_pred             HHhccCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHH
Confidence            1 11 15788889999999999888888888889999999999999999999999997 689999999988889776666


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHHhhccccccCCCCCCCCCCchHHHHHhcchHHHHHHHHHHHHHH
Q 009978          260 IFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWG  339 (521)
Q Consensus       260 ~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  339 (521)
                      ......++..++..+..++.++++... +                  +++..+..+.++.++++|.++...+..++....
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (402)
T TIGR00897       177 SALAFVLTGGVIALFSNKDIFTPQHMQ-T------------------REKFSELGKAATILFTNPNVLLGGMVRIINTIG  237 (402)
T ss_pred             HHHHHHHHHHHHHHhccCCCCCccccc-C------------------CcchhhHHHHHHHHHcChhHHHHHHHHHHHHHH
Confidence            554443333333344444332211100 0                  000111123466788999999888888888788


Q ss_pred             HHHHHHHHHHHHHHHhCCCcccchhHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHH--HHHHHHHHHHHHHHh
Q 009978          340 FFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQ--SIGFIAPGIALIGLT  417 (521)
Q Consensus       340 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~  417 (521)
                      .+.+..+.|.|+++ +|++..+.+.......+++.+++++.|++.||+++|+.       ...  .+...+....+....
T Consensus       238 ~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~-------~~~~~~l~~~~~~~~l~~~~  309 (402)
T TIGR00897       238 LFGFAVFLPMFVAE-LGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNT-------VRWFGGVGCGIFTLALYYIP  309 (402)
T ss_pred             HHHHHHHHHHHHHH-cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhH-------HHHHHHHHHHHHHHHHHHHH
Confidence            88889999999977 89999999988888899999999999999999997732       111  111111111111111


Q ss_pred             --ccchhHHH-HHHHHHHHHHHhhhhhhhHHHHHhhhccchhhHHhHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHH
Q 009978          418 --AAKSPVMA-SAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLT  494 (521)
Q Consensus       418 --~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~  494 (521)
                        ..++.+.. ...++.+.+... ..+ ......+..|+++|++.|+.+....++..++|.+.|.+.|..| +...+++.
T Consensus       310 ~~~~~~~~~~~~~~~~~G~~~~~-~~~-~~~~~~~~~~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g-~~~~~~~~  386 (402)
T TIGR00897       310 QHFGHSFAVALIIAIALGIFLAG-YVP-LAAVFPTLAPKHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFG-AIGVVWIF  386 (402)
T ss_pred             HccCCcHHHHHHHHHHHHHHHHH-HHH-HHHHHHhhCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-hHHHHHHH
Confidence              11223222 222333333332 222 3344567778899999999999999999999999999999988 78888888


Q ss_pred             HHHHHHHHHHHHHhc
Q 009978          495 SLLYFLSALFYIIFS  509 (521)
Q Consensus       495 ~~~~~~~~~~~~~~~  509 (521)
                      +++.+++.++..+.|
T Consensus       387 a~~~~i~~~~~~~~~  401 (402)
T TIGR00897       387 AALYVVSAFLTAFIR  401 (402)
T ss_pred             HHHHHHHHHHHHHhc
Confidence            887777766665543

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK09952 shikimate transporter; Provisional

Probab=100.00  E-value=5.5e-33  Score=276.36  Aligned_cols=385  Identities=13%  Similarity=0.068  Sum_probs=267.5

Q ss_pred             chhHHHHHHHHHHHHHHhhhhhhhhhhhhh-hhhhh--cCCcchhhHHH-----HHHHHHHHHhhhhhHHHHhHhcchHH
Q 009978           95 SERVKVVSMLALALALCNADRVVMSVAIVP-LSLAH--GWSRSFSGIVQ-----SSFLWGYLVSPIAGGTLVDYYGGKII  166 (521)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~s~~~~g~~~-----s~~~~~~~i~~~~~G~l~dr~Grr~~  166 (521)
                      .++++.+....+..++++++...++...|. +.+++  +.++. .+++.     ++..++..+++++.|+++||+|||++
T Consensus        18 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~   96 (438)
T PRK09952         18 SRARRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRM   96 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHH
Confidence            444567777888999999999999988775 45555  66666 45553     34556678899999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhhccccchH--------HHHHHHHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhh
Q 009978          167 MAWGVALWSLATFLTPWAADTSLL--------ALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGN  238 (521)
Q Consensus       167 ~~~~~~~~~~~~~l~~~~~~~~~~--------~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~  238 (521)
                      +.++.+++++++++++++  ++++        .++++|+++|++.|..++....++.|++|+++|++..+..+.+..+|.
T Consensus        97 l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~  174 (438)
T PRK09952         97 LMLTVWMMGIATALIGLL--PSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGL  174 (438)
T ss_pred             HHHHHHHHHHHHHHHhcC--CcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHH
Confidence            999999999999999999  8876        588899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhh--------ccCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHHhhccccccCCCCCC
Q 009978          239 AIGLVLSPILMS--------QAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKP  310 (521)
Q Consensus       239 ~~g~~l~~~l~~--------~~gw~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (521)
                      +++..+...+..        .+|||+.|++.++..++.. ......||+|+..      +.+   ++       .++  .
T Consensus       175 ~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~~-~l~~~~~es~~~~------~~~---~~-------~~~--~  235 (438)
T PRK09952        175 LLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIAL-WVRNGMEESAEFE------QQQ---HE-------QAA--A  235 (438)
T ss_pred             HHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHHH-HHHHhCCCChhHH------HHH---hh-------ccc--c
Confidence            998887776653        5799999998877654422 2222233332210      000   00       000  0


Q ss_pred             CCCCchHHHHHhcchHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhHhHHHHHHHHHHHHHHHHHHHHHHh
Q 009978          311 ATVIPPFRRLLSKMPTWSIIV-ANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQ  389 (521)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~  389 (521)
                      +......+.++++|+.+...+ ..++.....+....|.|.|+++.+|++...........++...++.++.|+++||++|
T Consensus       236 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~gr  315 (438)
T PRK09952        236 KKRIPVIEALLRHPGAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGR  315 (438)
T ss_pred             cccCCHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence            001122334667777666544 4455556677788899999988888887765555556667778888999999999998


Q ss_pred             cCCCcchhHHHHHHHHHHHHHHHH--HHH-h-ccchhHHHHHHHHHHHHHHhhhhhhhHHHHHhhhc-cchhhHHhHHHH
Q 009978          390 RGTSVTLTRKILQSIGFIAPGIAL--IGL-T-AAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNT  464 (521)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~  464 (521)
                      |+       ...  .+.+...+..  +.. . ..+..+..+...++.....+...+....+..|..| +.|+++.|+.+.
T Consensus       316 r~-------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~  386 (438)
T PRK09952        316 RR-------VYI--TGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQ  386 (438)
T ss_pred             hH-------HHH--HHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHH
Confidence            82       122  2222211111  111 1 11222222222333233333444556677778777 588999998766


Q ss_pred             HHH-HHHHHHHHHHHHHhhcc-cchHHHHHHHHHHHHHHHHHHHHhcc
Q 009978          465 AGT-FAAILGTVGAGFFVELV-GSFQGFLLLTSLLYFLSALFYIIFST  510 (521)
Q Consensus       465 ~~~-~g~~~~~~~~g~l~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~  510 (521)
                      ... +++.++|.+.|++.|.. |+|...+.+.+++.+++.+..+..++
T Consensus       387 ~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~  434 (438)
T PRK09952        387 VASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLMKD  434 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHccc
Confidence            654 89999999999999865 35777788787777777777665543

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=100.00  E-value=5.6e-34  Score=284.04  Aligned_cols=403  Identities=18%  Similarity=0.247  Sum_probs=283.6

Q ss_pred             hHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHHHHH
Q 009978           97 RVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSL  176 (521)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~~  176 (521)
                      ++..+....+.+...+..+..+....|.+.+ +|.++.+.+++.+++.++..+++++.|+++||+|||+++.++.++.++
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~  103 (438)
T TIGR00712        25 RWQVFLGIFFGYAAYYLVRKNFALAMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAA  103 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHhccHHhhhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHH
Confidence            4566666667777777777777778887776 599999999999999999999999999999999999999999999988


Q ss_pred             HHhhhhhcc--ccchHHHHHHHHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHhhh-ccC
Q 009978          177 ATFLTPWAA--DTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMS-QAG  253 (521)
Q Consensus       177 ~~~l~~~~~--~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~-~~g  253 (521)
                      +.+++++..  .++++.+++.|++.|++.+...+.....+.|++|+++|++++++.+.+.++|..+++.+.+...+ ..+
T Consensus       104 ~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~  183 (438)
T TIGR00712       104 VMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFND  183 (438)
T ss_pred             HHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhh
Confidence            888766541  14677788999999999998889899999999999999999999999999999999888776544 568


Q ss_pred             chhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHHhhccccccCCCCCCCCCCch-HHHHHhcchHHHHHHH
Q 009978          254 IFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPP-FRRLLSKMPTWSIIVA  332 (521)
Q Consensus       254 w~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~  332 (521)
                      ||+.|++.+++.++..+..++..+|+|++.+..+.++.+.  +..++.  .++.+++.+..+. .+..++++.+|...+.
T Consensus       184 w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (438)
T TIGR00712       184 WHAALYFPAICAIIVALFAFAMMRDTPQSCGLPPIEEYRN--DYPDDY--NEKAEQELTAKEIFMQYVLPNKLLWYIAIA  259 (438)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhccCCHHhcCCCCchhccc--cccccc--ccccccccchHHHHHHHHccCchHHHHHHH
Confidence            9999999998887766666666666554321111100000  000000  0000001111111 2346789999988888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCcccchhHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHH--HH
Q 009978          333 NAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIA--PG  410 (521)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~--~~  410 (521)
                      .++.....+++..+.|.|+++..|+++.++++...+..+++++++++.|++.||+++++..      .........  .+
T Consensus       260 ~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~------~~~~~~~~~~~~~  333 (438)
T TIGR00712       260 NVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRG------ATGVFFMTLVTIA  333 (438)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCccc------HHHHHHHHHHHHH
Confidence            7777777788889999999998899999999999999999999999999999999654211      111111111  11


Q ss_pred             HHHHHHhccchhHHHHHHHHHHHHHHhhhhhh-hHHHHHhhhc-cchhhHHhHHHHHHHHHH-HHHHHHHHHHhhcccch
Q 009978          411 IALIGLTAAKSPVMASAWLTLAIGMKSFSHSG-FLVNLQEIAP-QYSGVLHGISNTAGTFAA-ILGTVGAGFFVELVGSF  487 (521)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~g~~~g~~~~~~~~g~-~~~~~~~g~l~~~~g~~  487 (521)
                      ...+......+.+.... ..+..+........ ......+..| +.+|++.|+.+...++++ +++|.+.|.+.|..| +
T Consensus       334 ~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g-~  411 (438)
T TIGR00712       334 VIVYWMNPAGNPLVDMI-CMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG-W  411 (438)
T ss_pred             HHHHHhcCCCchHHHHH-HHHHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhcc-c
Confidence            11111111122222211 11222221111111 1223445555 689999999999988875 689999999999987 8


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhccCc
Q 009978          488 QGFLLLTSLLYFLSALFYIIFSTGE  512 (521)
Q Consensus       488 ~~~~~~~~~~~~~~~~~~~~~~~~~  512 (521)
                      ...+.+..++.+++.+..+.+.+++
T Consensus       412 ~~~~~~~~~~~~~~~~~~~~~~~~~  436 (438)
T TIGR00712       412 DGGFMVMIGGSILAVILLIVVMIGE  436 (438)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            8888888777777776666555443

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=100.00  E-value=2.6e-33  Score=275.66  Aligned_cols=353  Identities=17%  Similarity=0.176  Sum_probs=268.4

Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHHHHHHHh
Q 009978          100 VVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATF  179 (521)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~  179 (521)
                      .+..+.+..+........+.+..|.+.+++|.++.+.+++.+++.++..+++++.|+++||+|||+++..+.++.+++.+
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~   85 (385)
T TIGR00710         6 FALLLGCLSILGPLGIDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSL   85 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHH
Confidence            33444444555667777888899999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhccccchHHHHHHHHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHhhhccCchhHHH
Q 009978          180 LTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFV  259 (521)
Q Consensus       180 l~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gw~~~f~  259 (521)
                      ++.+.  ++++.+++.|++.|++.+...+...+++.|++|+++|++++++.+....+|..+++.+++.+.+..+||+.|+
T Consensus        86 ~~~~~--~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~  163 (385)
T TIGR00710        86 GLALS--NNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFA  163 (385)
T ss_pred             HHHHH--ccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHH
Confidence            99888  8999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHHhhccccccCCCCCCCCCCchHHHHHhcchHHHHHHHHHHHHHH
Q 009978          260 IFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWG  339 (521)
Q Consensus       260 ~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  339 (521)
                      +.++..++..+..++..||.++++++.+                      .+...+.+++.+++|.++...+...+....
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (385)
T TIGR00710       164 FLSLAGILLSALIFFILPETLPYEARIQ----------------------ISTYFETFLLLLKSKMFWGYALIYGASFGG  221 (385)
T ss_pred             HHHHHHHHHHHHHHHhCCCCCCCcccCC----------------------HHHHHHHHHHHHcCchhHHHHHHHHHHHHH
Confidence            9888877766665555555433221100                      011123456788899998888777777777


Q ss_pred             HHHHHHHHHHHHHHHhCCCcccchhHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHhc-
Q 009978          340 FFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTA-  418 (521)
Q Consensus       340 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  418 (521)
                      ......+.|.++++.+|.++.+.+.+.....++..++.++.+++.||+++|+       ..............++.... 
T Consensus       222 ~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~  294 (385)
T TIGR00710       222 FFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKS-------LLRMGLILFAVSAVLLEITAI  294 (385)
T ss_pred             HHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence            7778888899998889999999999999999999999999999999998872       22222211121111111111 


Q ss_pred             -c-chhHHHHHHHHHHHHHHhhhhhhhHHHHHhhhccchhhHHhHHHHHHHHHHHHHHHHHHHHhhc
Q 009978          419 -A-KSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVEL  483 (521)
Q Consensus       419 -~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~  483 (521)
                       . ...........+.....+...+.......+..|++++++.++.+.....++.+.+.+.+.+.+.
T Consensus       295 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~i~~~~~~~~~~~  361 (385)
T TIGR00710       295 LGLGSWAMIIGPMMFVGIGNSMISSIAMAYALEDFPHVAGTASALFGTLRLVLGAIVGYLVSLIHGN  361 (385)
T ss_pred             hccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence             1 1122222222222222333344445555666678899999999999887666666667755443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>TIGR00899 2A0120 sugar efflux transporter

Probab=100.00  E-value=3.2e-33  Score=274.02  Aligned_cols=365  Identities=16%  Similarity=0.112  Sum_probs=273.1

Q ss_pred             HHHHHhhhhhhhhhhhhh-hhhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHH-HHHHHHHHHhhhhhc
Q 009978          107 ALALCNADRVVMSVAIVP-LSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAW-GVALWSLATFLTPWA  184 (521)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~-~~~~~~~~~~l~~~~  184 (521)
                      .+++..+......+.+|. +.+++|.|+.++|++.+++.+...+.+++.|+++||+||||.+++ +.++..++.++++++
T Consensus         5 ~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~   84 (375)
T TIGR00899         5 VAFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWN   84 (375)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhc
Confidence            455666666777787776 567899999999999999999999999999999999999887654 556666677778888


Q ss_pred             cccchHHHHHHHHHHhhhhcchhhHHHHHHHhcCCchhhHHH--HHHHHhhhhhhhHHHHHHHHHhhhccCchhHHHHHH
Q 009978          185 ADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARA--VAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFG  262 (521)
Q Consensus       185 ~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~--~~~~~~~~~~g~~~g~~l~~~l~~~~gw~~~f~~~~  262 (521)
                        ++++.+++.|++.|.+.+...|...+++.|+.|+++|++.  .+....+.++|..+||++++.+.+.+|||+.|++.+
T Consensus        85 --~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~  162 (375)
T TIGR00899        85 --RNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAA  162 (375)
T ss_pred             --chHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHH
Confidence              8999999999999988888888888999999887777654  688888899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHHhhccccccCCCCCCCCCCchHHHHHhcchHHHHHHHHHHHHHHHHH
Q 009978          263 LSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFV  342 (521)
Q Consensus       263 ~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  342 (521)
                      ++.++..+..++..||.|+++++.                    +     ...+.++.+++|.++...+..++.......
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~--------------------~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (375)
T TIGR00899       163 LAFVLCGVLVWLFLPSYPRGAPGA--------------------L-----TRLEVRGLLASRDTRLLFVACTLMWGCNIL  217 (375)
T ss_pred             HHHHHHHHHHHHhCCCcccCcccc--------------------c-----CcchhhhhhcCcchHHHHHHHHHHHHHHHH
Confidence            887777666666566654322100                    0     011233466777777666666665555566


Q ss_pred             HHHHHHHHHHHHhCCCcccchhHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHhccchh
Q 009978          343 ILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSP  422 (521)
Q Consensus       343 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  422 (521)
                      ...+.|.|+++.+|.++.+.+.......+...++.++.+++.||+++|+         ....+.....+....+...++.
T Consensus       218 ~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~---------~~~~~~~~~~~~~~~~~~~~~~  288 (375)
T TIGR00899       218 YIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRR---------LMLLAALAGVAFYTGLAADNSL  288 (375)
T ss_pred             HHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchh---------HHHHHHHHHHHHHHHHHHHHHH
Confidence            6778899988888999999998887777777888899999999999883         2222222222222222223333


Q ss_pred             HHHHHHHHHHHHHHhhhhhhhHHHHHhhhccchhhHHhHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHH
Q 009978          423 VMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSA  502 (521)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~  502 (521)
                      +......++.....+...+....+..+..|++++++.++++...++|..++|.+.|.+.|..| +...|.+.+++.+++.
T Consensus       289 ~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g-~~~~~~~~~~~~~~~~  367 (375)
T TIGR00899       289 WALLMLQLLNAIFIGILAGIGMLYFQDLMPGRAGAATTLYTNTGRVGWIIAGSVGGILAERWS-YHAVYWFAIVMLIVAL  367 (375)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-chhHHHHHHHHHHHHH
Confidence            333333333233333444555666778888888899999999999999999999999999887 8899988888887777


Q ss_pred             HHHHHh
Q 009978          503 LFYIIF  508 (521)
Q Consensus       503 ~~~~~~  508 (521)
                      ++....
T Consensus       368 ~~~~~~  373 (375)
T TIGR00899       368 FCLLLI  373 (375)
T ss_pred             HHHhee
Confidence            766544

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK10504 putative transporter; Provisional

Probab=100.00  E-value=6.8e-33  Score=279.65  Aligned_cols=373  Identities=13%  Similarity=0.091  Sum_probs=276.9

Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHHHHHHHh
Q 009978          100 VVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATF  179 (521)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~  179 (521)
                      .+..+++..++..++...+.+..|.+.+++|.++.+.+++.+.+.++..++.+++|+++||+|||++++.+.++.+++.+
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~   90 (471)
T PRK10504         11 QLWIVAFGFFMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSL   90 (471)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHH
Confidence            35566677788888888889999999999999999999999999999999999999999999999999999999999988


Q ss_pred             hhhhccccchHHHHHHHHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHhhhccCchhHHH
Q 009978          180 LTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFV  259 (521)
Q Consensus       180 l~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gw~~~f~  259 (521)
                      ++.++  ++++.+++.|+++|++.+...+...+++.|++|+++|++++++.....++|..+||.+++.+.+..|||+.|+
T Consensus        91 ~~~~~--~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~  168 (471)
T PRK10504         91 FCALS--GTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFL  168 (471)
T ss_pred             HHHHh--CCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHH
Confidence            88888  8999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHH----------HHhhcc-ccc------------------cCCCCCC
Q 009978          260 IFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYI----------LREKQK-PLL------------------MGNKHKP  310 (521)
Q Consensus       260 ~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~-~~~------------------~~~~~~~  310 (521)
                      +......+..+......|+.+.+..+.+.......          .++.+. ...                  ..++...
T Consensus       169 ~~~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (471)
T PRK10504        169 INIPVGIIGAIATLMLMPNYTMQTRRFDLSGFLLLAVGMATLTLALDGSKGLGLSPLAIAGLVAVGVVALLLYLLHARNN  248 (471)
T ss_pred             HHHHHHHHHHHHHHHhCCCccccCCCCChHHHHHHHHHHHHHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            98877776666655555554433222221110000          000000 000                  0000111


Q ss_pred             CCCCchHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhHhHHHHHHHHHHHHHHHHHHHHHHhc
Q 009978          311 ATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQR  390 (521)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~  390 (521)
                      .+...+. ++++||.++...+..++..........+.|.|++..+|.++.+.++......++..++.++.+++.||+++|
T Consensus       249 ~~~~~~~-~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~  327 (471)
T PRK10504        249 NRALFSL-KLFRTRTFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYR  327 (471)
T ss_pred             CCCccCH-HHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCch
Confidence            1222233 578999999888888888888777778899999887899999999998888888888889999999999988


Q ss_pred             CCCcchhHHHHHHHHHHHHHHHHHHHhc---cchhHHHHH-HHHHHHHHHhhhhhhhHHHHH-hhhccchhhHHhHHHHH
Q 009978          391 GTSVTLTRKILQSIGFIAPGIALIGLTA---AKSPVMASA-WLTLAIGMKSFSHSGFLVNLQ-EIAPQYSGVLHGISNTA  465 (521)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~g~~~~~  465 (521)
                      +         .+..+..+.++....+..   .+..+.... .++.+.+. +...+....... ..+++.+|.++|+.++.
T Consensus       328 ~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  397 (471)
T PRK10504        328 R---------VLVATTLGLALVSLLFMLVALLGWYYLLPFVLFLQGMVN-STRFSSMNTLTLKDLPDNLASSGNSLLSMI  397 (471)
T ss_pred             H---------HHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCCHHhccchHHHHHHH
Confidence            2         222233322222222221   122222221 22222222 233333334443 44457999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhccc
Q 009978          466 GTFAAILGTVGAGFFVELVG  485 (521)
Q Consensus       466 ~~~g~~~~~~~~g~l~~~~g  485 (521)
                      ..+|..+|+.+.|.+.+..|
T Consensus       398 ~~~g~~ig~~i~g~ll~~~g  417 (471)
T PRK10504        398 MQLSMSIGVTIAGLLLGLFG  417 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHhh
Confidence            99999999999999998776

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=100.00  E-value=1.2e-34  Score=284.57  Aligned_cols=372  Identities=19%  Similarity=0.212  Sum_probs=276.7

Q ss_pred             HHHHHhhhhhhhhhhhhhhhhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHHHHHHHhhhhhccc
Q 009978          107 ALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAAD  186 (521)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~l~~~~~~  186 (521)
                      .++..+.++..++...|.+.+++|.++.+.|++.+++.++..+++++.|+++||+|||+++.++.++.+++.++++++  
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~--   80 (379)
T TIGR00881         3 GYAAYYLVRKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFS--   80 (379)
T ss_pred             hhhHHHHhHHhhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHh--
Confidence            456777888899999999999999999999999999999999999999999999999999999999999999999998  


Q ss_pred             cchHHHHHHHHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHH-HHHHHhhhccCchhHHHHHHHHH
Q 009978          187 TSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGL-VLSPILMSQAGIFGPFVIFGLSG  265 (521)
Q Consensus       187 ~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~-~l~~~l~~~~gw~~~f~~~~~~~  265 (521)
                      ++++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|..+++ .+++.+.+..+||+.|++.+++.
T Consensus        81 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (379)
T TIGR00881        81 TSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIA  160 (379)
T ss_pred             hhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999 57777777889999999988887


Q ss_pred             HHHHHHHHHhcCCCCCCCCCCchhHHHHHHHhhccccccCCCCCCCCCCchHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Q 009978          266 FLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILS  345 (521)
Q Consensus       266 ~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  345 (521)
                      ++..++.++..++++++++..+.++.+.  ++.+.. ..+.+++.+......+.++++|.++...+..++.......+..
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (379)
T TIGR00881       161 IIVSLICFLLLRDSPQSCGLPPAEEMPN--EEPDGD-AEKKEEELTKKQIFLQYVLLNKVLWYISLGYVFVYVVRTGILD  237 (379)
T ss_pred             HHHHHHHheeeCCCccccccCccccCcc--cccccc-cccccccccchHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence            7766666666666554322111110000  000000 0001111112223456788999999998888888888888999


Q ss_pred             HHHHHHHHHhCCCcccchhHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHhc--cchhH
Q 009978          346 WMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTA--AKSPV  423 (521)
Q Consensus       346 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  423 (521)
                      +.|.|+++.+|+++.+.+...+...++..+++++.+++.||..+++.      ....................  ..+..
T Consensus       238 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (379)
T TIGR00881       238 WSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRR------GPLAVFFMALIIVSLLVYWLNPAANPL  311 (379)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcc------hHHHHHHHHHHHHHHHHHhcCcchhHH
Confidence            99999998889999999999999999999999999999998754421      11111111112222222211  22222


Q ss_pred             HHHHHHHHHHHHHhhhhhhhHHHHHhhhc-cchhhHHhHHHHHHHHHHHHHHHHHHHHhhcccchHHH
Q 009978          424 MASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGF  490 (521)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~  490 (521)
                      ......++.................+..| ++||++.|+.+....+|..++|.+.|.+.|..| |...
T Consensus       312 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~  378 (379)
T TIGR00881       312 MDLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFG-WAGA  378 (379)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhc-cccc
Confidence            22222222111122222233344555555 699999999999999999999999999999887 6543

>PRK10133 L-fucose transporter; Provisional

Probab=100.00  E-value=9.9e-33  Score=273.42  Aligned_cols=370  Identities=15%  Similarity=0.109  Sum_probs=271.3

Q ss_pred             hHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHHHHH
Q 009978           97 RVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSL  176 (521)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~~  176 (521)
                      ....+..+.+.++...+......+..|.+++++|+|+.+.|++.+.+.+++.+++++.|+++||+|||+++.++.+++++
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~  103 (438)
T PRK10133         24 YIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYAL  103 (438)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence            45556667777788888888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhh---hhccccchHHHHHHHHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHhhh-c-
Q 009978          177 ATFLT---PWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMS-Q-  251 (521)
Q Consensus       177 ~~~l~---~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~-~-  251 (521)
                      +.+++   .++  ++++.++++|+++|+|.+...+..+.++.|+.|+++|.+.+++.+..+.+|..+|+.+++.+.. . 
T Consensus       104 ~~~l~~~~~~a--~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~~~~~  181 (438)
T PRK10133        104 GAALFWPAAEI--MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNV  181 (438)
T ss_pred             HHHHHHHHHhc--CCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            99875   345  8999999999999999999999999999998877777778999999999999999999876541 0 


Q ss_pred             ------------------------cCchhHHHHHHHHHH-HHHHHHHHhcCCCCCCCCCCchhHHHHHHHhhccccccCC
Q 009978          252 ------------------------AGIFGPFVIFGLSGF-LWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGN  306 (521)
Q Consensus       252 ------------------------~gw~~~f~~~~~~~~-i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (521)
                                              .+||++|+....+.. +..++.....|+.+++++                     .
T Consensus       182 ~~~~~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~~~~---------------------~  240 (438)
T PRK10133        182 PHQSQDVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNH---------------------S  240 (438)
T ss_pred             cccchhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccc---------------------c
Confidence                                    246666654443332 222222222222111100                     0


Q ss_pred             CCCCCCCCchHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCCcccchhHhHHHHHHHHHHHHHHHHHHH
Q 009978          307 KHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYF-NFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSD  385 (521)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~d  385 (521)
                      +++..+..+..++++++|.++...+..++..........|.+.|+ ++.+|+++.++++......++..+++++.+++.|
T Consensus       241 ~~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~  320 (438)
T PRK10133        241 DAKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLIS  320 (438)
T ss_pred             cccccchhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            001112234566889999988887777777778887888889885 5568999999999999999999999999999999


Q ss_pred             HHHhcCCCcchhHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhhhhhhhHHHHHhhhccchhhHHhHHHHH
Q 009978          386 MLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGISNTA  465 (521)
Q Consensus       386 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~  465 (521)
                      |+++|+       ..  ..+..+....++.....+.... +..+.+.+.+.+...|..+....+..|++.+++.++.. +
T Consensus       321 r~g~~~-------~l--~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~glg~~~i~P~~~s~a~~~~~~~~~~as~l~~-~  389 (438)
T PRK10133        321 RFAPHK-------VL--AAYALIAMALCLISAFAGGHVG-LIALTLCSAFMSIQYPTIFSLGIKNLGQDTKYGSSFIV-M  389 (438)
T ss_pred             HcCHHH-------HH--HHHHHHHHHHHHHHHHcCChHH-HHHHHHHHHHHHHHHHHHHHHHHcccchhhccchhHHh-H
Confidence            999882       22  2222222222222222222222 22333444445556667777777777777788888886 4


Q ss_pred             HHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHH
Q 009978          466 GTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFL  500 (521)
Q Consensus       466 ~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~  500 (521)
                      ..+|+.++|.+.|.+.|..|+.+..|++..++.+.
T Consensus       390 ~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~  424 (438)
T PRK10133        390 TIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAV  424 (438)
T ss_pred             HhccchHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence            55789999999999999876456666655444433

>PRK10489 enterobactin exporter EntS; Provisional

Probab=100.00  E-value=5.3e-34  Score=282.93  Aligned_cols=377  Identities=16%  Similarity=0.125  Sum_probs=272.5

Q ss_pred             HHHHHhhhhhhhhhhhhhhhhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHHHHHHHhhhhh---
Q 009978          107 ALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPW---  183 (521)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~l~~~---  183 (521)
                      ..++..+......+.+|.+.++++.++.+.|++.+.+.++..+++++.|+++||+|||+++..+.++.+++.+..++   
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~  104 (417)
T PRK10489         25 ARFISIFGLGLLGVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAF  104 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHH
Confidence            34455556667788899999999999999999999999999999999999999999999998888877776654432   


Q ss_pred             ccccchHHHHHHHHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHhhhccCchhHHHHHHH
Q 009978          184 AADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGL  263 (521)
Q Consensus       184 ~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gw~~~f~~~~~  263 (521)
                      ...++++.+++.|++.|++.+...+...+++.|++|+++|+++.++.....++|..+||.+++.+.+..+|++.|++.++
T Consensus       105 ~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~  184 (417)
T PRK10489        105 LPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAA  184 (417)
T ss_pred             cCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHH
Confidence            11267889999999999998888889999999999999999999999999999999999999999998899999998877


Q ss_pred             HHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHHhhccccccCCCCCCCCCCchHHHHHhcchHHHHHHHHHHHHHHHHHH
Q 009978          264 SGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVI  343 (521)
Q Consensus       264 ~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  343 (521)
                      ..++..++.+. .|+.++++.+.                    ++..++..+.++..+++|.++...+..++... ...+
T Consensus       185 ~~~~~~~~~~~-l~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  242 (417)
T PRK10489        185 GTFITLLPLLR-LPALPPPPQPR--------------------EHPLRSLLAGFRFLLASPVVGGIALLGGLLTM-ASAV  242 (417)
T ss_pred             HHHHHHHHHHh-CCCCCCCCccc--------------------ccchHHHHHHHHHHHcChHHHHHHHHHHHHHH-HHhH
Confidence            76665544433 34332211100                    00001112345567788887766655544333 4567


Q ss_pred             HHHHHHHHHHHhCCCcccchhHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHhccchhH
Q 009978          344 LSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPV  423 (521)
Q Consensus       344 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  423 (521)
                      ..+.|.|+++.+|.++.+.+++.+...++.+++.++.+++.||.+++         ..+..+..+.++....+...++.+
T Consensus       243 ~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~---------~~l~~~~~~~~~~~~~~~~~~~~~  313 (417)
T PRK10489        243 RVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPG---------LLMLLSTLGSFLAVGLFGLMPMWI  313 (417)
T ss_pred             HHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcc---------hHHHHHHHHHHHHHHHHHccchHH
Confidence            78899999998899999999999999999999999999999875443         122233333333344444444443


Q ss_pred             HHHHHHHHHHHHHhhhhhhhHHHHHhhhc-cchhhHHhHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHH-HHHH
Q 009978          424 MASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLL-YFLS  501 (521)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~-~~~~  501 (521)
                      ...+..++.+...+...+....+..+..| +.||+++|+++...++|..+||.+.|.+.|..| +...+...+++ .+++
T Consensus       314 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g-~~~~~~~~~~~~~~~~  392 (417)
T PRK10489        314 LAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMT-PVASASASGFGLLIIG  392 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhc-hhhHHHHHHHHHHHHH
Confidence            33333333223333334444566666666 589999999999999999999999999999988 55555555544 4445


Q ss_pred             HHHHHHhccCcccc
Q 009978          502 ALFYIIFSTGERVN  515 (521)
Q Consensus       502 ~~~~~~~~~~~~~~  515 (521)
                      ++.....++.++++
T Consensus       393 ~~~~~~~~~~~~~~  406 (417)
T PRK10489        393 VLLLLVLGELRRFR  406 (417)
T ss_pred             HHHHHhcccccccc
Confidence            55555544444433

>TIGR00900 2A0121 H+ Antiporter protein

Probab=100.00  E-value=5.2e-33  Score=271.41  Aligned_cols=353  Identities=14%  Similarity=0.098  Sum_probs=272.7

Q ss_pred             HHHHHHHhhhhhhhhhhhhhhhhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHHHHHHHhhhhhc
Q 009978          105 ALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWA  184 (521)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~l~~~~  184 (521)
                      ....++..+......+.+|.+..+++.++.++|++.+++.++..++++++|+++||+|||+++..+.++..++.++..+.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~   84 (365)
T TIGR00900         5 FAAQLISLIGTAITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFV   84 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHH
Confidence            45566667777788888999999999999999999999999999999999999999999999999999988888877776


Q ss_pred             ccc-----chHHHHHHHHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHhhhccCchhHHH
Q 009978          185 ADT-----SLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFV  259 (521)
Q Consensus       185 ~~~-----~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gw~~~f~  259 (521)
                        +     +++.+++.|++.|++.+...+...+++.|++|+++|++++++.+....+|.++||.+++.+.+..|||+.|+
T Consensus        85 --~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~  162 (365)
T TIGR00900        85 --ALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIW  162 (365)
T ss_pred             --HHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence              5     899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHHhhccccccCCCCCCCCCCchHHHHHhcchHHHHHHHHHHHHHH
Q 009978          260 IFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWG  339 (521)
Q Consensus       260 ~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  339 (521)
                      +.++..++..+..+...++++++++..+.++ +                ..++..+.++.++++|.++...+..++....
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (365)
T TIGR00900       163 VDAVGFAISALLIVSVRIPELAASEIQALSN-A----------------VLRDTREGIKFVLKNPLLRTLLLLALLFNLV  225 (365)
T ss_pred             HHHHHHHHHHHHHHhcccccCCCccccccch-h----------------HHHHHHhHHHHHHcCcHHHHHHHHHHHHHHH
Confidence            9887766655444433222221111100000 0                0001123456788899998888887777777


Q ss_pred             HHHHH-HHHHHHHHHHhCCCcccchhHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHhc
Q 009978          340 FFVIL-SWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTA  418 (521)
Q Consensus       340 ~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  418 (521)
                      ..... .+.|.|.++.+|.+..+.+.......++..++.++.+++.||.+++         .....+....++....+..
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~~~~~~~~~~~~~~~  296 (365)
T TIGR00900       226 FAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRM---------ALMTGAIFVIGLAILVVGL  296 (365)
T ss_pred             HHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchh---------HHHHHHHHHHHHHHHHHHh
Confidence            76666 8889999887899999999999999999999999999999999877         2333333333333333333


Q ss_pred             cch-hHHHHHHHHHHHHHHhhhhhhhHHHHHhhhc-cchhhHHhHHHHHHHHHHHHHHHHHHHHhhccc
Q 009978          419 AKS-PVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVG  485 (521)
Q Consensus       419 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g  485 (521)
                      .+. .+...+..++.....+...+....+..+..| ++|+++.|+.+...+++..++|.+.|.+.|..|
T Consensus       297 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~~g  365 (365)
T TIGR00900       297 TPPNFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADHLG  365 (365)
T ss_pred             hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            332 3333333333333334444555555666555 699999999999999999999999999998754

>PRK15075 citrate-proton symporter; Provisional

Probab=100.00  E-value=1.4e-32  Score=273.73  Aligned_cols=356  Identities=15%  Similarity=0.114  Sum_probs=246.8

Q ss_pred             hHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcCCcchhhHHH-HHH-----HHHHHHhhhhhHHHHhHhcchHHHHHH
Q 009978           97 RVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQ-SSF-----LWGYLVSPIAGGTLVDYYGGKIIMAWG  170 (521)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~-s~~-----~~~~~i~~~~~G~l~dr~Grr~~~~~~  170 (521)
                      |++....++++.+++++++..+++..|.+.++++.++.+.+.+. +..     .++..+++++.|+++||+|||++++.+
T Consensus        13 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~   92 (434)
T PRK15075         13 KARAILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVT   92 (434)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHH
Confidence            45567788889999999999999999999999999888765443 322     222346889999999999999999999


Q ss_pred             HHHHHHHHhhhhhccccchH--------HHHHHHHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHH
Q 009978          171 VALWSLATFLTPWAADTSLL--------ALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGL  242 (521)
Q Consensus       171 ~~~~~~~~~l~~~~~~~~~~--------~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~  242 (521)
                      .+++.++.++++++  ++++        .++++|+++|++.+...+....++.|++|+++|++++++...+.++|..+++
T Consensus        93 ~~~~~~~~~l~~~~--~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~  170 (434)
T PRK15075         93 LSIMASGTLLIAFV--PGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAA  170 (434)
T ss_pred             HHHHHHHHHHHHhC--CcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHH
Confidence            99999999999998  7876        4688999999999999999999999999999999999999999888888888


Q ss_pred             HHHHHhh--------hccCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHHhhccccccCCCCCCCCCC
Q 009978          243 VLSPILM--------SQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVI  314 (521)
Q Consensus       243 ~l~~~l~--------~~~gw~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (521)
                      .+++.+.        +.+|||+.|++..+...+.    +......|+. +   +...    +        ++   +.+..
T Consensus       171 ~~g~~l~~~~~~~~~~~~gWr~~f~~~~~~~~~~----~~~~~~~~e~-~---~~~~----~--------~~---~~~~~  227 (434)
T PRK15075        171 LLGYLLNQWLSPAQMAEWGWRIPFLIGCLIVPFI----FLIRRSLEET-E---EFLA----R--------KH---RPSMR  227 (434)
T ss_pred             HHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHH----HHHHHhcCCC-H---HHHH----h--------hh---ccccc
Confidence            8877763        4679999998754432211    1111111111 0   0000    0        00   00112


Q ss_pred             chHHHHHhcchHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhHhHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 009978          315 PPFRRLLSKMPTWSI-IVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTS  393 (521)
Q Consensus       315 ~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~  393 (521)
                      +.++...+++..+.. .+..++.....+.+..|.|.|+++.+|++..+.++...+..++..++.++.|++.||+++|+  
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~--  305 (434)
T PRK15075        228 EIFRSLAANWRIVLAGMLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRP--  305 (434)
T ss_pred             cHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH--
Confidence            234445555555443 33334445567778899999999888999988888888888999999999999999999882  


Q ss_pred             cchhHHHHHHHHHHHHHHHH--H-HHhccchhHHHHHHHHHHHHHHhhhhhhhHHHHHhhhc-cchhhHHhHHHHHHH-H
Q 009978          394 VTLTRKILQSIGFIAPGIAL--I-GLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGT-F  468 (521)
Q Consensus       394 ~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~-~  468 (521)
                           .... ..........  . .....+..........+.....+...+....+..|..| +.|+++.|+.+.+.. +
T Consensus       306 -----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~  379 (434)
T PRK15075        306 -----VLIA-FTVLAILTAYPALSWLVAAPSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAI  379 (434)
T ss_pred             -----HHHH-HHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHH
Confidence                 1221 1111111111  1 11122222222221222222223333444455566666 689999999766555 4


Q ss_pred             HHHHHHHHHHHHhhccc
Q 009978          469 AAILGTVGAGFFVELVG  485 (521)
Q Consensus       469 g~~~~~~~~g~l~~~~g  485 (521)
                      ++.++|.+.|.+.|..|
T Consensus       380 ~g~~~p~~~g~i~~~~g  396 (434)
T PRK15075        380 FGGFTPAISTWLIHVTG  396 (434)
T ss_pred             HhhhHHHHHHHHHHhcC
Confidence            58889999999999887

>PRK03633 putative MFS family transporter protein; Provisional

Probab=100.00  E-value=1.8e-32  Score=268.44  Aligned_cols=361  Identities=14%  Similarity=0.098  Sum_probs=265.0

Q ss_pred             HHHHHHHHHHHhhhhhhhhhhhhhhhhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHHHHHHHhh
Q 009978          101 VSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFL  180 (521)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~l  180 (521)
                      +..+.+..++.........+.+|.+.+++|.|..++|++.+.+.++..+++++.|+++||+|||+++..+.++.+++.++
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~   87 (381)
T PRK03633          8 VLLLLCGLLLLTLAIAVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAG   87 (381)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55556777778888889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhccccchHHHHHHHHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHhhhccCchhHHHH
Q 009978          181 TPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVI  260 (521)
Q Consensus       181 ~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gw~~~f~~  260 (521)
                      ++++  ++++.+++.|+++|++.+...+...+.+.+..++++|+++++++..+.++|..+|+.+++.+.+...|...+. 
T Consensus        88 ~~~~--~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~-  164 (381)
T PRK03633         88 LGLM--VGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTELMSVLPWV-  164 (381)
T ss_pred             HHHh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHH-
Confidence            8888  8999999999999999998888888888899999999999999999999999999999999877544433332 


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHHhhccccccCCCCCCCCCCchHHHHHhcchHHHHHHHHHHHHHHH
Q 009978          261 FGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGF  340 (521)
Q Consensus       261 ~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  340 (521)
                      .+....... ..++. +.+++..+                    +   +   ...+.++.+++|.++......+......
T Consensus       165 ~~~~~~~~~-~~~~~-~~~~~~~~--------------------~---~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (381)
T PRK03633        165 TGLVLAAIL-PLLFT-RILNQQAE--------------------N---H---DSTSIWPMLKLRQARLGVNGCIISGIVL  216 (381)
T ss_pred             HHHHHHHHH-HHHHh-cccCCCCC--------------------C---C---CCCCHHHHHHhcchHHHHHHHHHHHHHH
Confidence            222222111 11121 11111100                    0   0   1123456788888776655455555556


Q ss_pred             HHHHHHHHHHHHHHhCCCcccchhHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHhccc
Q 009978          341 FVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAK  420 (521)
Q Consensus       341 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  420 (521)
                      .....++|.|+++ .|.++.+.+...+...++.+++++..+++.||+++|+         ....+.....+....+.  .
T Consensus       217 ~~~~~~lp~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~---------~l~~~~~~~~~~~~~~~--~  284 (381)
T PRK03633        217 GSLYGLMPLYLNH-QGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLL---------VLRVQVFVVILGSIAML--S  284 (381)
T ss_pred             HHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHH---------HHHHHHHHHHHHHHHHh--h
Confidence            6677889999987 6999999999888989999999999999999999882         22222222222222222  1


Q ss_pred             hhHHHHHHHHHHHHHHhhhhhhhHHHHHhhhc-cchhhHHhHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHH
Q 009978          421 SPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYF  499 (521)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~  499 (521)
                      .........+++.+.. ...+.......+..| ++++...+..+...++|..+||.+.|++.|+.| +...|.+.+.+.+
T Consensus       285 ~~~~~~~~~l~g~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g-~~~~f~~~~~~~l  362 (381)
T PRK03633        285 QAAMAPALFILGAAGF-TLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYS-DNLLFIMIASVSF  362 (381)
T ss_pred             hHHHHHHHHHHHHHHH-hHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-ccHHHHHHHHHHH
Confidence            1111222222232222 333445454455444 577778888888889999999999999999987 8888888777776


Q ss_pred             HHHHHHH
Q 009978          500 LSALFYI  506 (521)
Q Consensus       500 ~~~~~~~  506 (521)
                      +..+..+
T Consensus       363 ~~~~~~~  369 (381)
T PRK03633        363 IYLLMLL  369 (381)
T ss_pred             HHHHHHH
Confidence            5544443

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=100.00  E-value=7.5e-34  Score=288.03  Aligned_cols=401  Identities=19%  Similarity=0.142  Sum_probs=272.0

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcCC--------cchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHH
Q 009978           98 VKVVSMLALALALCNADRVVMSVAIVPLSLAHGWS--------RSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAW  169 (521)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s--------~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~  169 (521)
                      +....++.+..+...++...+....+.+..+++.+        ..+.+++.+++.++..++++++|+++||+|||+++++
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~  106 (481)
T TIGR00879        27 ALLSLIAAIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLI  106 (481)
T ss_pred             HHHHHHHHHHHHhcccccchhhhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHH
Confidence            33444455566667778888888999998888777        8999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhhcc-ccchHHHHHHHHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHH---
Q 009978          170 GVALWSLATFLTPWAA-DTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLS---  245 (521)
Q Consensus       170 ~~~~~~~~~~l~~~~~-~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~---  245 (521)
                      +.++..++.+++.+.. ..+++.+++.|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..+++.++   
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~  186 (481)
T TIGR00879       107 IALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGK  186 (481)
T ss_pred             HHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHh
Confidence            9999999988875541 145668999999999999999999999999999999999999999999999999999999   


Q ss_pred             HHhhhccCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCC-CCchhHHHHHHHhhccccccC-------------CCCCCC
Q 009978          246 PILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHP-QISKYELEYILREKQKPLLMG-------------NKHKPA  311 (521)
Q Consensus       246 ~~l~~~~gw~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~  311 (521)
                      ....+..+||+.|++.++..++..+ ..++.+|+|.... ..+.++.+...++........             ...+.+
T Consensus       187 ~~~~~~~~w~~~f~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (481)
T TIGR00879       187 VSLNNTLGWRIPLGLQLIPAGLLFL-GLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDIKRSIEKR  265 (481)
T ss_pred             hcCCCCccHHHHHHHHHHHHHHHHH-HHhcCCCChHHHHHcCChHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHh
Confidence            6666778999999996665555443 3344566543110 001111111100000000000             000000


Q ss_pred             CCCchHHHHHh------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhHhHHHHHHHHHHHHHHHHHHH
Q 009978          312 TVIPPFRRLLS------KMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSD  385 (521)
Q Consensus       312 ~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~d  385 (521)
                      .....++..++      .+.++...+..+...........+.|.+.++ .|++..+.+.......++.+++.++.+++.|
T Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d  344 (481)
T TIGR00879       266 SVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFEN-AGVSTDHAFLVSIIVGAVNFAFTFVAIFLVD  344 (481)
T ss_pred             hccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHH-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            00011223332      2223333333333333344456677777766 7999888888888889999999999999999


Q ss_pred             HHHhcCCCcchhHHHHHHHHHHHHHHHHHHHh-----ccc------hhHHHHHHHHHHHHHHhhhhhhhHHHHHhhhc-c
Q 009978          386 MLIQRGTSVTLTRKILQSIGFIAPGIALIGLT-----AAK------SPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-Q  453 (521)
Q Consensus       386 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  453 (521)
                      |+++|+         ....+..+.++..+.+.     ...      .........++..+......+....+..+..| +
T Consensus       345 ~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  415 (481)
T TIGR00879       345 RFGRRP---------LLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLS  415 (481)
T ss_pred             HhcchH---------HHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChH
Confidence            999882         22222222222222221     111      12222222223333333333455566677776 5


Q ss_pred             chhhHHhHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHhcc
Q 009978          454 YSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYIIFST  510 (521)
Q Consensus       454 ~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  510 (521)
                      .|+++.|+.+...++|.+++|.+.+.+.+..| +...|++.+++.+++.++.+.+.+
T Consensus       416 ~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~-~~~~f~~~~~~~~~~~i~~~~~~~  471 (481)
T TIGR00879       416 LRPKGISIAVAANWLANFIVGFLFPTMLESIG-VGGVFIFFGGLNVLGLIFVYFFLP  471 (481)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-ccceehhHHHHHHHHHHHHheecc
Confidence            89999999999999999999999999999887 888888888777777666554433

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=100.00  E-value=4.3e-33  Score=282.70  Aligned_cols=372  Identities=18%  Similarity=0.160  Sum_probs=285.0

Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHHHHHHHh
Q 009978          100 VVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATF  179 (521)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~  179 (521)
                      .+..+.+..++..++.....+.+|.+.+++|.+..+.+++.+.+.++..++.++.|+++||+|||+++.++.++..++.+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~   82 (485)
T TIGR00711         3 LTIVLMLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSL   82 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence            45566778888889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhccccchHHHHHHHHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHhhhccCchhHHH
Q 009978          180 LTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFV  259 (521)
Q Consensus       180 l~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gw~~~f~  259 (521)
                      +++++  ++++.+++.|+++|++.+...+...+++.|++|+++|+++++++.....+|..+||.+++++.++++||+.|+
T Consensus        83 ~~~~~--~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~  160 (485)
T TIGR00711        83 LCGVA--PNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFL  160 (485)
T ss_pred             HHhCc--CCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhh
Confidence            99998  9999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCCCCC-CchhHHH----------HHHHhhcc-ccccC-------------------CCC
Q 009978          260 IFGLSGFLWVLVWLSATSSTPDRHPQ-ISKYELE----------YILREKQK-PLLMG-------------------NKH  308 (521)
Q Consensus       260 ~~~~~~~i~~i~~~~~~~~~~~~~~~-~~~~~~~----------~~~~~~~~-~~~~~-------------------~~~  308 (521)
                      +.+.+.++..++..+..|++++...+ .+.....          ....+..+ .....                   .+.
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (485)
T TIGR00711       161 INVPIGIIVVVVAFFILPRDKPAASENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEILILSITGLVAIIAFVVWEL  240 (485)
T ss_pred             hhhHHHHHHHHHHHHHcCCccccccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence            98888777666665555554332211 1111000          00000000 00000                   000


Q ss_pred             CCCCCCchHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhHhHHHHHHHHHHHHHHHHHHHHHH
Q 009978          309 KPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLI  388 (521)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~  388 (521)
                      +++++..+ .+++++|.++...+..++.....+....++|.|+++.+|+++.++++......++..++.++.|++.||++
T Consensus       241 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~  319 (485)
T TIGR00711       241 TDDNPLVD-LRLFKYRNFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKID  319 (485)
T ss_pred             cCCCCccC-HHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            01111122 36788999998888888888888888899999999989999999999999999999999999999999999


Q ss_pred             hcCCCcchhHHHHHHHHHHHHHHHHHHHh--c--cchhHHHHH-HHHHHHHHHhhhhhhhHHHHHhhhccchhhHHhHHH
Q 009978          389 QRGTSVTLTRKILQSIGFIAPGIALIGLT--A--AKSPVMASA-WLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGISN  463 (521)
Q Consensus       389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~  463 (521)
                      +|         .....+....++....+.  .  ..+.+.... .++.+.+......+.........+++++|++.|+.+
T Consensus       320 ~~---------~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  390 (485)
T TIGR00711       320 PR---------KLVTIGLILYAVGFYWRAFTFTPDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSN  390 (485)
T ss_pred             cH---------HHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHH
Confidence            88         233334444443333332  1  122222222 233333333333344444455566689999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhc
Q 009978          464 TAGTFAAILGTVGAGFFVEL  483 (521)
Q Consensus       464 ~~~~~g~~~~~~~~g~l~~~  483 (521)
                      ....+|+.+|+.+.|.+.++
T Consensus       391 ~~~~~g~~ig~~i~g~~~~~  410 (485)
T TIGR00711       391 FTRQLGGSIGTALITTILTN  410 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999875

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=100.00  E-value=2e-32  Score=269.95  Aligned_cols=369  Identities=13%  Similarity=0.031  Sum_probs=266.2

Q ss_pred             HHHHHHHHHHHhhhhhhhhhhhhhhhhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHHHHHHHhh
Q 009978          101 VSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFL  180 (521)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~l  180 (521)
                      ...+.+..+...+....+.+.+|.+.++++.+..+.++..+++.+++.++++++|+++||+|||++++.+.++.+++.++
T Consensus        18 ~~~~~~~~~~~~~~~~~~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~   97 (413)
T PRK15403         18 PMALILYDFAAYLTTDLIQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAA   97 (413)
T ss_pred             HHHHHHHHHHHHHHHHhhccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHH
Confidence            33345555667778889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhccccchHHHHHHHHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHhhhccCchhHHHH
Q 009978          181 TPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVI  260 (521)
Q Consensus       181 ~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gw~~~f~~  260 (521)
                      +.++  ++++.++++|+++|++.+...+...+++.|++|+++|++++++......+|..+||.+++.+.+..|||+.|++
T Consensus        98 ~~~a--~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~  175 (413)
T PRK15403         98 TLFT--TSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAI  175 (413)
T ss_pred             HHHc--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            9998  99999999999999998876777788999999999999999999999999999999999999988999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHHhhccccccCCCCCCCCCCchHHHHHhcchHHHHHHHHHHHHHHH
Q 009978          261 FGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGF  340 (521)
Q Consensus       261 ~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  340 (521)
                      .++..++..+..++..||+++++++.                     .+.....++++++++||.+|...+..++.....
T Consensus       176 ~~~~~~i~~~~~~~~lp~~~~~~~~~---------------------~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~  234 (413)
T PRK15403        176 IAVMGLIAFVGLLLAMPETVKRGAVP---------------------FSAKSVLRDFRNVFRNRLFLTGAATLSLSYIPM  234 (413)
T ss_pred             HHHHHHHHHHHHHHhCCCCccccCCC---------------------CChHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH
Confidence            99887776665555556543221100                     000112345678899999999888888888888


Q ss_pred             HHHHHHHHHHHHHHhCCCcccchhHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHhccc
Q 009978          341 FVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAK  420 (521)
Q Consensus       341 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  420 (521)
                      ..+..+.|.++++.+|+++.+.++.......+..++..+.+++.++..+++...  ....+..++.........  ...+
T Consensus       235 ~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~--~~~~~~~ig~~l~~~~~~--~~~~  310 (413)
T PRK15403        235 MSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIW--RAVPIQLVGLALLIVGNL--LWPH  310 (413)
T ss_pred             HHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHH--HHHHHHHHHHHHHHHHHH--Hccc
Confidence            888888999999988999999999887777777777777766654433221100  000011111111111111  1122


Q ss_pred             hhHHHHHHHHHHHHHHhhhhhhhHHHHHhhhccchhhHHhHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHH
Q 009978          421 SPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLY  498 (521)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~  498 (521)
                      ..+......++.....+...+........-.+..+|++.++.+.....+..+++...|++.+..  -...|...+++.
T Consensus       311 ~~~~~~~~~~l~~~G~~~~~p~~~~~al~~~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~  386 (413)
T PRK15403        311 VWLWSVLGTSLYAFGIGLIFPTLFRFTLFSNNLPKGTVSASLNMVILMVMAVSVEIGRWLWFNG--GRLPFHLLAVVA  386 (413)
T ss_pred             cHHHHHHHHHHHHHHHHHHhHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CchHHHHHHHHH
Confidence            2221222222222222223333332221222235899999999999999999999999998873  344444444333

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=100.00  E-value=1.4e-32  Score=278.60  Aligned_cols=412  Identities=15%  Similarity=0.125  Sum_probs=275.7

Q ss_pred             cchhHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhh-----cCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHH
Q 009978           94 TSERVKVVSMLALALALCNADRVVMSVAIVPLSLAH-----GWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMA  168 (521)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~  168 (521)
                      .++++..+.++.++.+.++++....+...|.+.+++     +.+..+.+++.+.+.++..++++++|+++||+|||+++.
T Consensus        11 ~~~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~   90 (502)
T TIGR00887        11 GWQHFRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYG   90 (502)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHH
Confidence            456777888888999999999999999998887643     345667899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhhccccc------hHHHHHHHHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHH
Q 009978          169 WGVALWSLATFLTPWAADTS------LLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGL  242 (521)
Q Consensus       169 ~~~~~~~~~~~l~~~~~~~~------~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~  242 (521)
                      ++.++..++.++++++  ++      ++.++++|+++|++.|...+....++.|++|+++|+++.++.+....+|.++++
T Consensus        91 ~~~~~~~v~~~~~~~~--~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~  168 (502)
T TIGR00887        91 MELIIMIIATVASGLS--PGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGA  168 (502)
T ss_pred             HHHHHHHHHHHHHHHc--cCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999888877  44      788999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhh-----------------------ccCchhHHHHHHHHHHHHHHHHHHhcCCCCCCC---CCCchhHHHHHHH
Q 009978          243 VLSPILMS-----------------------QAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRH---PQISKYELEYILR  296 (521)
Q Consensus       243 ~l~~~l~~-----------------------~~gw~~~f~~~~~~~~i~~i~~~~~~~~~~~~~---~~~~~~~~~~~~~  296 (521)
                      .++..+..                       ..+||+.|.+.++.+++..+ ..+..||+|+..   .+.+++..+...+
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~-~~~~lpESpr~l~~~~~~~~~a~~~~~~  247 (502)
T TIGR00887       169 IVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALY-FRLTIPETPRYTADVAKDVEQAASDMSA  247 (502)
T ss_pred             HHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHH-HHHhCCCCHHHHHHhCcchHHHHHHHHH
Confidence            88876542                       23799999887777665444 345668888742   1111111211111


Q ss_pred             hhccccc--cCC----CCCCCCCCchHHHHHhc---chHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccch
Q 009978          297 EKQKPLL--MGN----KHKPATVIPPFRRLLSK---MPTWS----IIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQAS  363 (521)
Q Consensus       297 ~~~~~~~--~~~----~~~~~~~~~~~~~~~~~---~~~~~----~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  363 (521)
                      ....+..  .++    +++++....++++++++   ++.+.    .....+.....+++...+.|.++++ .|++....+
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~p~i~~~-~G~~~~~~~  326 (502)
T TIGR00887       248 VLQVKIEAEPDEVEKASTAVEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDIAFYGVNLNQKVILSA-IGYSPPAAT  326 (502)
T ss_pred             HhccccccCcccccchhccccchhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHccccccHHHHHH-HcCCCCccc
Confidence            1110000  000    00011112356666653   22211    1222333344555667778888876 688765332


Q ss_pred             h------------HhHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHh--ccc-hhHHHHHH
Q 009978          364 W------------FSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLT--AAK-SPVMASAW  428 (521)
Q Consensus       364 ~------------~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~  428 (521)
                      .            ...+..++.+++.++.+++.||+|||+         +...+..+.++....+.  ... ........
T Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~---------~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  397 (502)
T TIGR00887       327 NNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKP---------IQLMGFFILTVLFFVLGFAYNHLSTHGFLAI  397 (502)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchh---------HHHHHHHHHHHHHHHHHHHHHhcchhHHHHH
Confidence            1            123334456668889999999999983         22222222222222221  110 11111111


Q ss_pred             HHHHHHH-HhhhhhhhHHHHHhhhc-cchhhHHhHHHHHHHHHHHHHHHHHHHHhhccc---------chHHHHHHHHHH
Q 009978          429 LTLAIGM-KSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVG---------SFQGFLLLTSLL  497 (521)
Q Consensus       429 ~~~~~~~-~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g---------~~~~~~~~~~~~  497 (521)
                      ..+...+ .....+..+.+..|..| +.|+++.|+.+.+.+++++++|.+.+++.+..+         ++...|.+.+++
T Consensus       398 ~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~  477 (502)
T TIGR00887       398 YVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALF  477 (502)
T ss_pred             HHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHH
Confidence            1122222 22233445666788888 589999999999999999999999999988431         145567777777


Q ss_pred             HHHHHHHHHHhccCccccccc
Q 009978          498 YFLSALFYIIFSTGERVNFDE  518 (521)
Q Consensus       498 ~~~~~~~~~~~~~~~~~~~~~  518 (521)
                      .+++.+..+++++.++++.+|
T Consensus       478 ~~~~~i~~~~lpEt~~~~lee  498 (502)
T TIGR00887       478 MFLGILFTLLIPETKGKSLEE  498 (502)
T ss_pred             HHHHHHHheEeccCCCCCHHh
Confidence            766666555556555554443

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK03893 putative sialic acid transporter; Provisional

Probab=100.00  E-value=2.7e-32  Score=277.38  Aligned_cols=385  Identities=14%  Similarity=0.133  Sum_probs=265.2

Q ss_pred             chhHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHHH
Q 009978           95 SERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALW  174 (521)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~  174 (521)
                      +++|+.+..+++..+++.++.....+..|.+.+++|.++.+.+++.+.+.++..+++++.|+++||+|||+++.++.++.
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~   95 (496)
T PRK03893         16 RAQWKAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLF   95 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence            45677888888899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhhhccccchHHHHHHHHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHhhhccCc
Q 009978          175 SLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGI  254 (521)
Q Consensus       175 ~~~~~l~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gw  254 (521)
                      +++.+++.+.  ++++.+++.|++.|++.+...+....++.|++|+++|++++++...+..+|..+++.+++.+.+.++|
T Consensus        96 ~~~~~~~~~~--~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w  173 (496)
T PRK03893         96 SVGTLACGFA--PGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGW  173 (496)
T ss_pred             HHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCH
Confidence            9999999988  89999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCC-chhHHHHHHHhhccccccCCCCCCCCCCch---------HHHHHh--
Q 009978          255 FGPFVIFGLSGFLWVLVWLSATSSTPDRHPQI-SKYELEYILREKQKPLLMGNKHKPATVIPP---------FRRLLS--  322 (521)
Q Consensus       255 ~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~--  322 (521)
                      |+.|++.++..++. +......|+.++...+. ++.+.+...+...       . .++.....         ....+.  
T Consensus       174 ~~~f~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~-------~-~~~~~~~~~~~~~~~~~~~~~~~~~  244 (496)
T PRK03893        174 RALFFIGILPIIFA-LWLRKNLPEAEDWKEKHAGKAPVRTMVDILY-------R-GEHRIINILLTLAAAAALWFCFAGN  244 (496)
T ss_pred             HHHHHHHHHHHHHH-HHHHHhCCCchhhhhhccccccchhHHHHHh-------c-chhHHHHHHHHHHHHHHHHHHHHhh
Confidence            99998754433332 22222233332111000 0000000000000       0 00000000         000000  


Q ss_pred             ----------------------------c-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhHhHHHHHHH
Q 009978          323 ----------------------------K-MPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVM  373 (521)
Q Consensus       323 ----------------------------~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  373 (521)
                                                  + +......+..+...........++|.|+++.+|++..+++.+.+...++.
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~  324 (496)
T PRK03893        245 LQNAAIVAVLGLLCAAIFISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTDLGYDPHTVANVLFFSGFGA  324 (496)
T ss_pred             hcchhHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhccchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHH
Confidence                                        0 00000011111111111234578899998778999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHh-c-cchhHHHHHHHHHHHHHHhhhhhhhHHHHHhhh
Q 009978          374 AFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLT-A-AKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIA  451 (521)
Q Consensus       374 ~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  451 (521)
                      +++.++.|++.||+++|+         ....+..+..+..+.+. . ....+......++..+......+....+..+..
T Consensus       325 ~~g~~~~g~l~dr~g~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  395 (496)
T PRK03893        325 AVGCCVGGFLGDWLGTRK---------AYVCSLLISQLLIIPVFAIGGANVWVLGLLLFFQQMLGQGISGLLPKLIGGYF  395 (496)
T ss_pred             HHHHHHHHHHHHHhcchH---------HHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhcccchhhHHHHHhhC
Confidence            999999999999999882         22222222222222111 1 122222222222211222222334445555665


Q ss_pred             c-cchhhHHhHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHH
Q 009978          452 P-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFL  500 (521)
Q Consensus       452 ~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~  500 (521)
                      | +++|+++|+.+....+|..+||.+.|.+.|..| +...+...++...+
T Consensus       396 ~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g-~~~~~~~~~~~~~~  444 (496)
T PRK03893        396 DTEQRAAGLGFTYNVGALGGALAPILGALIAQRLD-LGTALASLSFSLTF  444 (496)
T ss_pred             CHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCC-hHHHHHHHHHHHHH
Confidence            5 689999999999999999999999999999988 77666555444333

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=100.00  E-value=9.5e-32  Score=264.95  Aligned_cols=353  Identities=16%  Similarity=0.140  Sum_probs=270.4

Q ss_pred             hHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHHHHH
Q 009978           97 RVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSL  176 (521)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~~  176 (521)
                      .++.+.+..+...+..+....+.+.+|.+.+++|.|+.+.+++.+++.++..++++++|+++||+|||+++.++.++..+
T Consensus         6 ~~~~l~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~   85 (394)
T PRK11652          6 NVNLLFMLVLLVAVGQMAQTIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFIL   85 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHH
Confidence            45555556666666677777888889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhhhccccchHHHHHHHHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHhhhccCchh
Q 009978          177 ATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFG  256 (521)
Q Consensus       177 ~~~l~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gw~~  256 (521)
                      +.+++.+.  ++++.+++.|++.|++.+...+....+..|.++++++++++++...+..+|..++|.+++.+.+..|||+
T Consensus        86 ~~~~~~~~--~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~  163 (394)
T PRK11652         86 GTLVALFA--HSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRA  163 (394)
T ss_pred             HHHHHHHH--ccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHH
Confidence            99988888  8999999999999999988888888999999999999999999999999999999999999999899999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHHhhccccccCCCCCCCCCCchHHHHHhcchHHHHHHHHHHH
Q 009978          257 PFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMH  336 (521)
Q Consensus       257 ~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  336 (521)
                      .|++.++..++..+...+..||+++.+++                        +.+..+++++.+++|.++...+..+..
T Consensus       164 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (394)
T PRK11652        164 CYLFLLLLGAGVTFSMARWMPETRPADAR------------------------RTRVLASYRTLLSNRRFNCYLLMLIGT  219 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCccCccccc------------------------hhHHHHHHHHHHcChHHHHHHHHHHHH
Confidence            99998887766555555555554322110                        001224566788888888777666666


Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCcccchhHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHH
Q 009978          337 SWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGL  416 (521)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  416 (521)
                      ......+..+.+.++++.+|+++.+.++......++..++.++.+++.||.+++        ............+.....
T Consensus       220 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~--------~~~~~~~~~~~~~~~~~~  291 (394)
T PRK11652        220 LAGIAVFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL--------MWQSVICCLLAGLLMWIP  291 (394)
T ss_pred             HHHHHHHHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHH
Confidence            666666677788899888899999999888888888888888889998888743        111111211121221111


Q ss_pred             h--ccchhHHHHHHHHHHHHHHhhhhhhhHHHHHhhhccchhhHHhHHHHHHHHHHHHHHHHHHHHhhc
Q 009978          417 T--AAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVEL  483 (521)
Q Consensus       417 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~  483 (521)
                      .  ...+.+......++.....+...+.......+..|+++|++.++.+....+|..+++.+.|.+.+.
T Consensus       292 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~~  360 (394)
T PRK11652        292 GWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFPYLAGTAGALLGGLQNIGSGLAALLSAMLPQT  360 (394)
T ss_pred             HHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence            1  112233333333333333344556666666677788999999999999999999999999988765

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=100.00  E-value=7e-32  Score=267.55  Aligned_cols=372  Identities=17%  Similarity=0.134  Sum_probs=268.3

Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhhhhhhcCCcch-----hhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHHHHHH
Q 009978          103 MLALALALCNADRVVMSVAIVPLSLAHGWSRSF-----SGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLA  177 (521)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-----~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~~~  177 (521)
                      .+.+..++.........+.+|.+.+++|.+..+     .|++.+++.++..++++++|+++||+|||+++..+.++.+++
T Consensus        18 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~   97 (408)
T PRK09874         18 VAWLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIV   97 (408)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHH
Confidence            344556666777778888999999999998665     488999999999999999999999999999999999999999


Q ss_pred             HhhhhhccccchHHHHHHHHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHhhhccCchhH
Q 009978          178 TFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGP  257 (521)
Q Consensus       178 ~~l~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gw~~~  257 (521)
                      .+++.+.  ++++.+++.|++.|++.+ ..+....++.+++|+++|++++++......+|..++|.+++.+.+..+||+.
T Consensus        98 ~~~~~~~--~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~  174 (408)
T PRK09874         98 MVLMGLA--QNIWQFLILRALLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPV  174 (408)
T ss_pred             HHHHHHH--hhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHH
Confidence            8888887  899999999999999865 4677888999999999999999999999999999999999999998999999


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHHhhccccccCCCCCCCCCCchHHHHHhcchHHHHH-HHHHHH
Q 009978          258 FVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSII-VANAMH  336 (521)
Q Consensus       258 f~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~  336 (521)
                      |++.+++.++..+..++..++++++.++.++.                       ..++..+.+++|+++... ...+..
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~  231 (408)
T PRK09874        175 FFITASVLFLCFLVTLFCIRENFQPVSKKEML-----------------------HMREVVTSLKNPKLVLSLFVTTLII  231 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCcccccchhhh-----------------------HHHHHHHhCcCCchHHHHHHHHHHH
Confidence            99998887776666655555543221100000                       001223445666655433 333334


Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCcc---cchhHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHH
Q 009978          337 SWGFFVILSWMPIYFNFVYHIDLR---QASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIAL  413 (521)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~  413 (521)
                      ......+..+.+.|..+..+....   ..+.+..+.+++..++.+..|++.||+++|+         ....+.....+..
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~---------~~~~~~~~~~~~~  302 (408)
T PRK09874        232 QVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEK---------ILITALIFSVLLL  302 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccch---------hHHHHHHHHHHHH
Confidence            444555667788888874332221   2345556667778888899999999999883         2222333333333


Q ss_pred             HHHhccchhHHHHHHHHHHHHHHhhhhhhhHHHHHhhh-ccchhhHHhHHHHHHHHHHHHHHHHHHHHhhcccchHHHHH
Q 009978          414 IGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIA-PQYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLL  492 (521)
Q Consensus       414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~  492 (521)
                      +.+...++.+...+..++.+...+...+.......+.. ++++|+.+++.+....+|..+||.+.|.+.+..| +...|+
T Consensus       303 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g-~~~~f~  381 (408)
T PRK09874        303 IPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYG-FRAVFL  381 (408)
T ss_pred             HHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcc-hhHHHH
Confidence            33333334443333333323333333444444444444 4689999999999999999999999999999887 999999


Q ss_pred             HHHHHHHHHHHHHHHhcc
Q 009978          493 LTSLLYFLSALFYIIFST  510 (521)
Q Consensus       493 ~~~~~~~~~~~~~~~~~~  510 (521)
                      +.+++.+++.++.+...+
T Consensus       382 ~~~~~~l~~~~~~~~~~~  399 (408)
T PRK09874        382 VTAGVVLFNAVYSWNSLR  399 (408)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            998888887776655433

>PRK12382 putative transporter; Provisional

Probab=100.00  E-value=7.2e-32  Score=265.63  Aligned_cols=365  Identities=17%  Similarity=0.150  Sum_probs=252.8

Q ss_pred             HHHHHHHHHHHhhhhhhhhhhhhh-hhhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHHHHHHHh
Q 009978          101 VSMLALALALCNADRVVMSVAIVP-LSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATF  179 (521)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~  179 (521)
                      +..+.+..++......+..+.+|. +.+++|.|..++|++.+++.++..++++++|+++||+||||+++.+.+...++.+
T Consensus        17 ~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~   96 (392)
T PRK12382         17 LFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGL   96 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHH
Confidence            333444556666666777788886 5688999999999999999999999999999999999999999998887766544


Q ss_pred             hh---hhc---cccchHHHHHHHHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHhhhccC
Q 009978          180 LT---PWA---ADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAG  253 (521)
Q Consensus       180 l~---~~~---~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g  253 (521)
                      .+   ...   ..++++.+++.|+++|++.+...+...+++.|++|+|+|++++++.+.+..+|..+||++++++.+.+|
T Consensus        97 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g  176 (392)
T PRK12382         97 AYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFG  176 (392)
T ss_pred             HHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            32   211   115788999999999999998889999999999999999999999999999999999999999999999


Q ss_pred             chhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHHhhccccccCCCCCCCCCCchHHHHHhcchHHHHHHHH
Q 009978          254 IFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVAN  333 (521)
Q Consensus       254 w~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  333 (521)
                      |++.+.+..+..++.... ....|+.+++++                        ++    .+.++.++  .++...+..
T Consensus       177 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~------------------------~~----~~~~~~~~--~~~~~~~~~  225 (392)
T PRK12382        177 FAALALTTMVLPLLAWAF-NGTVRKVPAHAG------------------------ER----PSLWSVVG--LIWKPGLGL  225 (392)
T ss_pred             hHHHHHHHHHHHHHHHHH-HHhccCCCCCcc------------------------cC----chHHHHHH--HHHHhHHHH
Confidence            998777655443332221 111121111000                        00    01112221  122222222


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCcccchhHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHH
Q 009978          334 AMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIAL  413 (521)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~  413 (521)
                      ++..........+.+.|+++ .|++.  .+.......++.++++++.|++.||+++|+.       ..  .+....++..
T Consensus       226 ~l~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~-------~~--~~~~~~~~~~  293 (392)
T PRK12382        226 ALQGVGFAVIGTFVSLYFAS-KGWAM--AGFTLTAFGGAFVLMRVLFGWMPDRFGGVKV-------AI--VSLLVETVGL  293 (392)
T ss_pred             HHHHHHHhHHHHHHHHHHHh-cCCch--hHHHHHHHHHHHHHHHHHHHHHHHhcCCCee-------hH--HHHHHHHHHH
Confidence            33344555667788888877 56653  4556666777788899999999999998732       22  2222222333


Q ss_pred             HHHhccchhHHHHHHHHHHHHHHhhhhhhhHHHH-HhhhccchhhHHhHHHHHHHHHHHHHHHHHHHHhhcccchHHHHH
Q 009978          414 IGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNL-QEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLL  492 (521)
Q Consensus       414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~  492 (521)
                      ..+...++.+......++.....+...+...... ...++++||++.|+.+....+|..++|.+.|.+.|+.| |...|.
T Consensus       294 ~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g-~~~~~~  372 (392)
T PRK12382        294 LLLWLAPTAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFG-YPSVFL  372 (392)
T ss_pred             HHHHHcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-chHHHH
Confidence            3333334443333333332222233334444443 44455799999999999999999999999999999988 999999


Q ss_pred             HHHHHHHHHHHHHHHhc
Q 009978          493 LTSLLYFLSALFYIIFS  509 (521)
Q Consensus       493 ~~~~~~~~~~~~~~~~~  509 (521)
                      +.+++.+++.++.+...
T Consensus       373 ~~~~~~~~~~~~~~~~~  389 (392)
T PRK12382        373 AGAISAVLGIIVTILSF  389 (392)
T ss_pred             HHHHHHHHHHHHHHhhc
Confidence            99888887777666543

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=100.00  E-value=3.4e-32  Score=275.46  Aligned_cols=396  Identities=17%  Similarity=0.155  Sum_probs=264.2

Q ss_pred             chhHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhh--------cCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHH
Q 009978           95 SERVKVVSMLALALALCNADRVVMSVAIVPLSLAH--------GWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKII  166 (521)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~  166 (521)
                      +..++...+..++.+..+++...+++..|.+.+++        +.++.+.+++.+++.++..++++++|+++||+|||++
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~   87 (479)
T PRK10077          8 SYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDS   87 (479)
T ss_pred             hHHHHHHHHHHHHHHhcCcccceehHhHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence            44566677777888899999999999999888877        8889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhhcc----------ccchHHHHHHHHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhh
Q 009978          167 MAWGVALWSLATFLTPWAA----------DTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTS  236 (521)
Q Consensus       167 ~~~~~~~~~~~~~l~~~~~----------~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~  236 (521)
                      ++++.+++.++.+++++..          .+.++.++++|+++|++.|...+...++++|++|+++|++++++.+.+..+
T Consensus        88 ~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~  167 (479)
T PRK10077         88 LKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIF  167 (479)
T ss_pred             HHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHH
Confidence            9999999988887766520          123567889999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHhh--------hccCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCC-CchhHHHHHHHhhccccccCCC
Q 009978          237 GNAIGLVLSPILM--------SQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQ-ISKYELEYILREKQKPLLMGNK  307 (521)
Q Consensus       237 g~~~g~~l~~~l~--------~~~gw~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  307 (521)
                      |.++++.++..+.        +.+|||+.|++.+++.++..+. .+..||+|+.... .+.++.+...++.....     
T Consensus       168 G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~-~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~~-----  241 (479)
T PRK10077        168 GQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLML-LYFVPETPRYLMSRGKQEQAEGILRKIMGNT-----  241 (479)
T ss_pred             HHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHH-HHcCCCCcHHHHHcCCHHHHHHHHHHHcCCh-----
Confidence            9999988776553        3568999999988877766544 4456776643111 11111111111111000     


Q ss_pred             CCCCCCCchHHHHHh-----cchHH-----HHH----HHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhHhHHHHHHH
Q 009978          308 HKPATVIPPFRRLLS-----KMPTW-----SII----VANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVM  373 (521)
Q Consensus       308 ~~~~~~~~~~~~~~~-----~~~~~-----~~~----l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  373 (521)
                       +.+....+.++.++     .+..+     ...    ...+......+....+.|.+.++ .|.+.....+.....++..
T Consensus       242 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~-~g~~~~~~~~~~~~~~~~~  319 (479)
T PRK10077        242 -LATQALQEIKHSLDHGRKTGGKLLMFGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKT-LGASTDIALLQTIIVGVIN  319 (479)
T ss_pred             -hHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHH-cCCCCchHHHHHHHHHHHH
Confidence             00000001111111     01110     001    11111112233445566777766 7888777777777788889


Q ss_pred             HHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHh---ccchhH-HHH-HHHHHHHHHHhhhhhhhHHHHH
Q 009978          374 AFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLT---AAKSPV-MAS-AWLTLAIGMKSFSHSGFLVNLQ  448 (521)
Q Consensus       374 ~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~  448 (521)
                      +++.++.+++.||+++|         .+...+..+.++..+.+.   ..+... ... ...+.+.+......+....+..
T Consensus       320 ~i~~~~~g~l~dr~g~r---------~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  390 (479)
T PRK10077        320 LTFTVLAIMTVDKFGRK---------PLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLS  390 (479)
T ss_pred             HHHHHHHHHHHHHhcCh---------HHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhccccchhHHHhH
Confidence            99999999999999988         233333333333332221   111111 111 1222222222223355667777


Q ss_pred             hhhc-cchhhHHhHHHHHHHHHHHHHHHHHHHHh------hcccchHHHHHHHHHHHHHHHHHHHHh
Q 009978          449 EIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFV------ELVGSFQGFLLLTSLLYFLSALFYIIF  508 (521)
Q Consensus       449 ~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~------~~~g~~~~~~~~~~~~~~~~~~~~~~~  508 (521)
                      |..| ++|+++.|+.+...+++.++++.+.+.+.      |..| +...|++.+++.+++.++.+.+
T Consensus       391 e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  456 (479)
T PRK10077        391 EIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFH-NGFSYWIYGCMGVLAALFMWKF  456 (479)
T ss_pred             hhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhcc-CccHHHHHHHHHHHHHHHHHhc
Confidence            7777 68999999999999999999977776544      4555 5667777676666665554443

>PRK11043 putative transporter; Provisional

Probab=100.00  E-value=2e-31  Score=263.29  Aligned_cols=350  Identities=18%  Similarity=0.117  Sum_probs=263.2

Q ss_pred             HHHHHHHHHHHhhhhhhhhhhhhhhhhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHHHHHHHhh
Q 009978          101 VSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFL  180 (521)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~l  180 (521)
                      +....+...+..+....+.+..|.+.+++|.++.+.+++.+++.++..++++++|+++||+|||+++..+.++..++.++
T Consensus         8 ~~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~   87 (401)
T PRK11043          8 LVYLAGLSMLGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLG   87 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHH
Confidence            33444445556667778888899999999999999999999999999999999999999999999999999999999988


Q ss_pred             hhhccccchHHHHHHHHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHhhhccCchhHHHH
Q 009978          181 TPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVI  260 (521)
Q Consensus       181 ~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gw~~~f~~  260 (521)
                      +.+.  ++++.+++.|+++|++.+...+...+++.|++|++++++..+.......+|..++|.+++++.+.+|||+.|++
T Consensus        88 ~~~~--~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~  165 (401)
T PRK11043         88 MLWV--ESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFAT  165 (401)
T ss_pred             HHHh--cCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence            8888  89999999999999998888888889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHHhhccccccCCCCCCCCCCchHHHHHhcchHHHHHHHHHHHHHHH
Q 009978          261 FGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGF  340 (521)
Q Consensus       261 ~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  340 (521)
                      .+++.++..+..+...++.+++++                          ++...++++++++|.++...+...+.....
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (401)
T PRK11043        166 LFAITLLLILPTLRLKPSKKARKQ--------------------------SQDALTFKQLLKSKTYLGNVLIFAACSAAF  219 (401)
T ss_pred             HHHHHHHHHHHHHHcCCCCCcccc--------------------------chHHHHHHHHHcChhHHHHHHHHHHHHHHH
Confidence            888877766555444332221100                          011235678888888877666666666666


Q ss_pred             HHHHHHHHHHHHHHhCCCcccchhHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHH--Hhc
Q 009978          341 FVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIG--LTA  418 (521)
Q Consensus       341 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~  418 (521)
                      ..+..+.|.++++ +|+++.+.++......++..++.++.+++.||+++++..      ........+....+..  ...
T Consensus       220 ~~~~~~~p~~~~~-~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~------~~~~~~~~~~~~~~~~~~~~~  292 (401)
T PRK11043        220 FAWLTGSPFILEQ-MGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLL------PWLLVLFAVSVIAIWLASLLS  292 (401)
T ss_pred             HHHHHHhHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHH------HHHHHHHHHHHHHHHHHHHhc
Confidence            6777888988877 799999999888777888889999999999999877210      1111111111111111  111


Q ss_pred             cchhHHHHHHHHHHHHHHhhhhhhhHHHHHhhhccchhhHHhHHHHHHHHHHHHHHHHHHHHhhccc
Q 009978          419 AKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVELVG  485 (521)
Q Consensus       419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g  485 (521)
                      .+..+..+....+.....+...+.......+..|+++|++.|+.++....++..++.+.|.+.+...
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~~  359 (401)
T PRK11043        293 HPSLVPLLIPFCVMAAANGAIYPIVVAQALRPFPQATGKAAALQNTLQLGLCFLASLLVSALISTPL  359 (401)
T ss_pred             cCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcccChHHHHHHHHHHHHHHHHHHHHHHHccCCCh
Confidence            2233322222222233333444444444455567899999999999999999999999999988543

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=100.00  E-value=7.4e-32  Score=264.38  Aligned_cols=365  Identities=16%  Similarity=0.183  Sum_probs=265.6

Q ss_pred             hhhhhhhhhhhhhhhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHHHHHHHhhhhhccccchHHH
Q 009978          113 ADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLAL  192 (521)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~l~~~~~~~~~~~l  192 (521)
                      +...++.+.+|.+.+++|+++.+.+++.+++.++..++++++|+++||+|||+++..+.++.+++.+++.+.  ++++.+
T Consensus         5 ~~~~~~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~--~~~~~~   82 (377)
T PRK11102          5 LAIDMYLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALA--QTIDQL   82 (377)
T ss_pred             hHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHH--ccHHHH
Confidence            344567789999999999999999999999999999999999999999999999999999999999999888  899999


Q ss_pred             HHHHHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHH
Q 009978          193 LAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVW  272 (521)
Q Consensus       193 ~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gw~~~f~~~~~~~~i~~i~~  272 (521)
                      ++.|++.|++.+...+...+++.|++|+++|++++++.+....+|..++|.+++.+.+..+||+.|++.+++.++..+..
T Consensus        83 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  162 (377)
T PRK11102         83 IYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALV  162 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999998999999999888877766665


Q ss_pred             HHhcCCCCCCCCCCchhHHHHHHHhhccccccCCCCCCCCCCchHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009978          273 LSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFN  352 (521)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  352 (521)
                      .+..||+++++++.                    +.+.++..+++++.+++|.++...+..++.......+..+.|.++.
T Consensus       163 ~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (377)
T PRK11102        163 FFFIPETLPKERRQ--------------------PFHLRTTIRNFASLFRHKRVLGYMLASGFSFAGMFSFLTAGPFVYI  222 (377)
T ss_pred             HHhCCccCcccccC--------------------CCChHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHcCHHHHH
Confidence            55555543221100                    0000111235567888998888777777776677777778888888


Q ss_pred             HHhCCCcccchhHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHH-HHHHHHHHHHhccc-hhHHHHHHHH
Q 009978          353 FVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGF-IAPGIALIGLTAAK-SPVMASAWLT  430 (521)
Q Consensus       353 ~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~  430 (521)
                      +.+|+++.+.+.......++..++.++.+++.||+++|+       ........ ...++........+ ..+.......
T Consensus       223 ~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (377)
T PRK11102        223 ELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALN-------MLRFGLWIQFIMGIWLVVSALLDLGFWALVVGVA  295 (377)
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHH-------HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            878999999999999999999999999999999999882       12211111 11222222221111 2222222222


Q ss_pred             HHHHHHhhhhhhhHHHHHhhhccchhhHHhHHHHHHH-HHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHhc
Q 009978          431 LAIGMKSFSHSGFLVNLQEIAPQYSGVLHGISNTAGT-FAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYIIFS  509 (521)
Q Consensus       431 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~-~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  509 (521)
                      +..+..............+..|+.+|++.++.+.... ++..+++.+.+. .+.  ++...+...+++.+++.+..++..
T Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~g~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~  372 (377)
T PRK11102        296 AFVGCVSMISSNAMAVILDEFPHMAGTASSLAGTLRFGIGAIVGALLSLA-PFT--SAWPMVWSMAFCSILSILFYLYAS  372 (377)
T ss_pred             HHHHHHHHhhHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHhc-cCC--ChHHHHHHHHHHHHHHHHHHHHhc
Confidence            2222222333333445566678899999999877654 566666655432 222  234444444555445544444443

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=100.00  E-value=1.9e-31  Score=262.58  Aligned_cols=354  Identities=16%  Similarity=0.134  Sum_probs=255.6

Q ss_pred             HHHHHHHHhhhhhhhhhhhhhhhhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHHHHHHHhhhhh
Q 009978          104 LALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPW  183 (521)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~l~~~  183 (521)
                      .....+........+.+.+|.+.+++|.++.+.++..+.+.++..+++++.|+++||+|||+.+..+.++..++.+++.+
T Consensus         8 ~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~   87 (392)
T PRK10473          8 SFALVLLYPAGIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSL   87 (392)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHH
Confidence            34444555555566778899999999999999999999999999999999999999999999999999999999999888


Q ss_pred             ccccchHHHHHHHHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHhhhccCchhHHHHHHH
Q 009978          184 AADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGL  263 (521)
Q Consensus       184 ~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gw~~~f~~~~~  263 (521)
                      .  ++++.+++.|+++|++.+...+...+++.|++|+++|++++++.+....+|..++|.+++.+.+..+||+.|++.++
T Consensus        88 ~--~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~  165 (392)
T PRK10473         88 A--ETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAA  165 (392)
T ss_pred             h--CcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHH
Confidence            8  89999999999999999988999999999999999999999999999999999999999998888899999999988


Q ss_pred             HHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHHhhccccccCCCCCCCCCCchHHHHHhcchHHHHHHHHHHHHHHHHHH
Q 009978          264 SGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVI  343 (521)
Q Consensus       264 ~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  343 (521)
                      +.++..++.....+|+++++++                       ++....+..++.+++|.++...+...+.......+
T Consensus       166 ~~~i~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (392)
T PRK10473        166 MGILVLLLSLFILKETRPARAP-----------------------AASSKPRENSESLLNRFFLSRLVITTLSVTVILTF  222 (392)
T ss_pred             HHHHHHHHHHHHcCCCCCcccC-----------------------CccchHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence            8777666655555554322110                       00011223456778888776666555555555566


Q ss_pred             HHHHHHHHHHHhCCCcccchhHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHhccchhH
Q 009978          344 LSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPV  423 (521)
Q Consensus       344 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  423 (521)
                      ..+.|.++++.+|+++.+.+.......++.+++.++.+++.||+++|+         ....+.....+....+.......
T Consensus       223 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~---------~~~~~~~~~~~~~~~~~~~~~~~  293 (392)
T PRK10473        223 VNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRT---------LMLTSQVLFLAAGITLALSPSHA  293 (392)
T ss_pred             HHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH---------HHHHHHHHHHHHHHHHHHHHHHH
Confidence            677788888878999999999989999999999999999999999882         22233333333232222222222


Q ss_pred             HHHHH-HHHHHHHHhhhhhhhHHHHHhhhc-cchhhHHhHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHH
Q 009978          424 MASAW-LTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLY  498 (521)
Q Consensus       424 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~  498 (521)
                      ..... .++..+.. ...+  .....+..| ++++   |.......++..+++.+.+++.+..| +.......+.+.
T Consensus       294 ~~~~~~~l~~~g~~-~~~~--~~~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~~~l~~~~g-~~~~~~~~~~~~  363 (392)
T PRK10473        294 VSLFGITLICAGFS-VGFG--VAMSQALGPFSLRA---GVASSTLGIAQVCGSSLWIWLAAVLG-ISAWNMLIGILI  363 (392)
T ss_pred             HHHHHHHHHHHHHH-HHhH--HHHHHHhccCcccc---cHHHHHHHHHHHHHHHHHHHHHHHhc-cchhHHHHHHHH
Confidence            21111 12222221 1111  122333444 2332   44445556777788888888888777 544444444433

>TIGR00895 2A0115 benzoate transport

Probab=100.00  E-value=4.1e-32  Score=268.40  Aligned_cols=374  Identities=21%  Similarity=0.245  Sum_probs=270.2

Q ss_pred             chhHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHHH
Q 009978           95 SERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALW  174 (521)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~  174 (521)
                      +++++.+....+..+...++.....+..|.+.+++|.++.+.+++.+.+.++..++.++.|+++||+|||+++..+.++.
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~   92 (398)
T TIGR00895        13 RYQWRAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLF   92 (398)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHH
Confidence            44566666677777778888888889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhhhccccchHHHHHHHHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHhhhccCc
Q 009978          175 SLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGI  254 (521)
Q Consensus       175 ~~~~~l~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gw  254 (521)
                      +++.+++.+.  ++++.+++.|++.|++.+...+...+++.|++|+++|++++++...+..+|..+++.+++.+.+..||
T Consensus        93 ~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~  170 (398)
T TIGR00895        93 SVFTLLCALA--TNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGW  170 (398)
T ss_pred             HHHHHHHHHc--cchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccc
Confidence            9999888888  89999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHHhh----cccccc--CCCCCCCCCCch-HHHHHhc---c
Q 009978          255 FGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREK----QKPLLM--GNKHKPATVIPP-FRRLLSK---M  324 (521)
Q Consensus       255 ~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~--~~~~~~~~~~~~-~~~~~~~---~  324 (521)
                      ++.|++.+++.++..++.+...|++++.....++++.....++.    ..+...  .+++.+.+..+. .+.++++   +
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (398)
T TIGR00895       171 RSLFYVGGIAPLLLLLLLMRFLPESIDFLVSKRPETVRRIVNAIAPQMQAEAQSALPEQKATQGTKRSVFKALFQGKTAR  250 (398)
T ss_pred             eeehhhhhhHHHHHHHHHHHhCCCCChHHHhcCHHHHHHHHHHHHHhccccccccccccccccchhhHHHHHHhcchhHH
Confidence            99999987666666555555666654322111111111111110    000000  000011111112 2223332   2


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHH
Q 009978          325 PTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSI  404 (521)
Q Consensus       325 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~  404 (521)
                      ..+.+.+..++..........+.|.+.++ +|.++.+.+.......++..++.++.+++.||+++|         .....
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~  320 (398)
T TIGR00895       251 ITVLLWLLYFMLLVGVYFLTNWLPKLMVE-LGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPR---------VTALL  320 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchH---------HHHHH
Confidence            34444455555566667777888855554 899999999999999999999999999999999877         11111


Q ss_pred             HHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhhhhhhhHHHHHhhhc-cchhhHHhHHHHHHHHHHHHHHHHHHHH
Q 009978          405 GFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFF  480 (521)
Q Consensus       405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l  480 (521)
                      ................+........++.....+...+....+..+..| ++|+++.|+.+....+|..++|.+.|++
T Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l  397 (398)
T TIGR00895       321 LLLGAVFAVLVGSTLFSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL  397 (398)
T ss_pred             HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence            111111122222212333333333333333344445556666667666 6999999999999999999999999876

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=100.00  E-value=1.4e-31  Score=262.41  Aligned_cols=374  Identities=15%  Similarity=0.110  Sum_probs=266.6

Q ss_pred             HHHHHHHHhhhhhhhhhhhhhhhhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHHHHHHHhhhhh
Q 009978          104 LALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPW  183 (521)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~l~~~  183 (521)
                      +.++.++..+.........+.+.++++.++.+.+++.+.+.+++.++++++|+++||+|||++++++.++.+++.+++.+
T Consensus         8 l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~   87 (393)
T PRK11195          8 IMAAQFFSALADNALLFAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLF   87 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHH
Confidence            45556666665555666667778999999999999999999999999999999999999999999999999988887777


Q ss_pred             ccccchHHHHHHHHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHhhhccCchhHHHHHHH
Q 009978          184 AADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGL  263 (521)
Q Consensus       184 ~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gw~~~f~~~~~  263 (521)
                      .  .+.   ++.|+++|++.+...|+..+++.|++|+++|++++++.+....+|.++||.+++++.+. .|+..+.+.+.
T Consensus        88 ~--~~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~-~~~~~~~i~~~  161 (393)
T PRK11195         88 G--IHP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADP-HAEAALAVCAL  161 (393)
T ss_pred             H--HHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence            6  553   77899999999999999999999999999999999999999999999999999999885 47777776665


Q ss_pred             HHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHHhhccccccCCCCCCCCCCchHHHHHhcchHHHHHHHHHHHHHHHHHH
Q 009978          264 SGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVI  343 (521)
Q Consensus       264 ~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  343 (521)
                      ..++..+ ..+..||.+++++..+.++... .+               +..+.++.++++|.+.......++.+......
T Consensus       162 ~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~-~~---------------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  224 (393)
T PRK11195        162 IYLLAAL-FNLFIPRLGARRPGQSWNPIAL-LR---------------DFFHACRVLWRDKLGRFSLAGTTLFWGAGATL  224 (393)
T ss_pred             HHHHHHH-HHhcCCCCcccccccCCCHHHH-HH---------------HHHHHHHHHHhCchhHHHHHHHHHHHHHHHHH
Confidence            5444333 3344555443221111100000 00               00123456788888776655555555555666


Q ss_pred             HHHHHHHHHHHhCCCcccchhHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHhccchhH
Q 009978          344 LSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPV  423 (521)
Q Consensus       344 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  423 (521)
                      ....|.|+++.+|.++.+.|+..+...++.++++++.+++.||.++++         ....+. ..+...+.+...++.+
T Consensus       225 ~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~---------~~~~g~-~~~~~~~~~~~~~~~~  294 (393)
T PRK11195        225 RFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLR---------VLPAGI-LMGLVVLLMALQHSLL  294 (393)
T ss_pred             HHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc---------hHHHHH-HHHHHHHHHHHHhHHH
Confidence            677788888889999999999999999999999999999988766552         122222 2222222233333344


Q ss_pred             HHHHHHHHHHHHHhhhhhhhHHHHHhhhccc--hhhHHhHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHH
Q 009978          424 MASAWLTLAIGMKSFSHSGFLVNLQEIAPQY--SGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLS  501 (521)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~  501 (521)
                      ......++.+...+...+......++..|++  +|++.++.+...+++..++..+.+.+ +..| ....+++.++..+.+
T Consensus       295 ~~~~~~~~~G~~~g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~  372 (393)
T PRK11195        295 PAYPLLILIGALGGFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLL-VKLG-VPVVAVIVGFGLLVA  372 (393)
T ss_pred             HHHHHHHHHHHhhhhhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHH-HHcC-CCHHHHHHHHHHHHH
Confidence            3333332222233333344455556666653  69999999999999999999999865 5566 677777766666666


Q ss_pred             HHHHHHhccCc
Q 009978          502 ALFYIIFSTGE  512 (521)
Q Consensus       502 ~~~~~~~~~~~  512 (521)
                      ..+.+.++.++
T Consensus       373 ~~~~~~~~~~~  383 (393)
T PRK11195        373 LAMALLWRWHR  383 (393)
T ss_pred             HHHHHHHHHHH
Confidence            66665555433

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=100.00  E-value=4.9e-33  Score=270.24  Aligned_cols=346  Identities=26%  Similarity=0.390  Sum_probs=262.4

Q ss_pred             HHHHHHHhhhhhhhhhhhh-hhhhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHHHHHHHhhhhh
Q 009978          105 ALALALCNADRVVMSVAIV-PLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPW  183 (521)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~l~~~  183 (521)
                      ++..++..+......+..| .+.+++|.++.+++++.+++.++..+++++.|+++||+|||+++.++.++.+++.++..+
T Consensus         2 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~   81 (352)
T PF07690_consen    2 FLAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAF   81 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhh
Confidence            4566777777888889999 899999999999999999999999999999999999999999999999999999666667


Q ss_pred             ccccchHHHHHHHHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHhhhccCchhHHHHHHH
Q 009978          184 AADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGL  263 (521)
Q Consensus       184 ~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gw~~~f~~~~~  263 (521)
                      +  ++++.+++.|++.|++.+...+...+++.|++|+++|++++++.+...++|.+++|.+++.+.+.++||+.|++.++
T Consensus        82 ~--~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~  159 (352)
T PF07690_consen   82 A--SNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAI  159 (352)
T ss_dssp             H--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHH
T ss_pred             h--hhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccc
Confidence            6  77789999999999999999999999999999999999999999999999999999999999988999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHHhhccccccCCCCCCCCCCc-hHHHHHhcchHHHHHHHHHHHHHHHHH
Q 009978          264 SGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIP-PFRRLLSKMPTWSIIVANAMHSWGFFV  342 (521)
Q Consensus       264 ~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~  342 (521)
                      +.++..++.....++++++++..++++.+               ++.+.... .++.++++|.+|...+..++.......
T Consensus       160 ~~~~~~il~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (352)
T PF07690_consen  160 LSLIAAILFILFLPEPPPPRERESPKESE---------------SKKPKPLKPGFKSLFKNPVLWILLIAFFLFFFVFSG  224 (352)
T ss_dssp             HHHHHHHHHHCCC---STTTT--SSTTTT-----------------HHHCCCH-CTHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhHhhhhhhcccccccccccccc---------------cccccccccccccccccchhhhhhhhhhHHHHHHHH
Confidence            98887765445544444333221111100               00111122 366788888887666666666667778


Q ss_pred             HHHHHHHHHHHHhCCC-cccchhHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHH-HHHHHHHHHhccc
Q 009978          343 ILSWMPIYFNFVYHID-LRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFI-APGIALIGLTAAK  420 (521)
Q Consensus       343 ~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  420 (521)
                      ...+.|.|+.+.+|++ ..+.+....+..+...++.++.+++.||++++       +......... .....+......+
T Consensus       225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~  297 (352)
T PF07690_consen  225 FSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRR-------RRLLIAILLLILGALGLLLLPFSS  297 (352)
T ss_dssp             HHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCH-------HHHHHHHHHHHHHHHHHCCSHHHC
T ss_pred             hhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcH-------HHHHHHHHHHHHHHHHHHHHHHhh
Confidence            8999999977879999 78899999999999999999999999998876       2222222222 2222222222222


Q ss_pred             hhHHHHHHHHHHHHHHhhhhhhhHHHHHhhhc-cchhhHHhHHHHHHHHHHHHHH
Q 009978          421 SPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGT  474 (521)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~  474 (521)
                      +....+...++.....+...+.......+..| +++|++.|+.+...+++..+||
T Consensus       298 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP  352 (352)
T PF07690_consen  298 SPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP  352 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence            23333333333333445556666666666665 7999999999999999999987

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=100.00  E-value=2.3e-31  Score=261.55  Aligned_cols=362  Identities=14%  Similarity=0.095  Sum_probs=259.1

Q ss_pred             HHHHhhhhhhhhhhhh-hhhhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHHHHHHHhhhhhccc
Q 009978          108 LALCNADRVVMSVAIV-PLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAAD  186 (521)
Q Consensus       108 ~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~l~~~~~~  186 (521)
                      .++.........+.++ .+.+++|+|+.++|++.+...++..+.+++.|+++||+|||+++..+.++.+++.+++.+.  
T Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~--   96 (400)
T PRK11646         19 NMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIA--   96 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHh--
Confidence            3333333344444444 4678899999999999999999999999999999999999999999999999999999888  


Q ss_pred             cchHHHHHHHHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHhhhccCchhHHHHHHHHHH
Q 009978          187 TSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGF  266 (521)
Q Consensus       187 ~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gw~~~f~~~~~~~~  266 (521)
                      ++++.+++.|+++|++.+...+...+++.|++|+++|++++++.....++|..+||.+++++. .+|||+.|++.++..+
T Consensus        97 ~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~  175 (400)
T PRK11646         97 HEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFV  175 (400)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHH
Confidence            899999999999999998888999999999999999999999999999999999999999998 6799999999888776


Q ss_pred             HHHHHHHHhcCCCCCCCCCCchhHHHHHHHhhccccccCCCCCCCCCCchHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Q 009978          267 LWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSW  346 (521)
Q Consensus       267 i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  346 (521)
                      +..++..+..|+.++++                         .+++..+++++.+++|.++...+..+...........+
T Consensus       176 ~~~i~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (400)
T PRK11646        176 LAAAFNAWLLPAYKLST-------------------------VRTPVREGMTRVLRDKRFVTYVLTLTGYYMLAVQVMLM  230 (400)
T ss_pred             HHHHHHHHhCCcccccc-------------------------cchhhHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHh
Confidence            66555444444321110                         00012235667888998877666555544444445678


Q ss_pred             HHHHHHHHhCCCcccchhHhHHHHHHHHHHHHHHHHHHHH-HHhcCCCcchhHHHHHHHHHHHHHHHHHHHhccchhHHH
Q 009978          347 MPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDM-LIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMA  425 (521)
Q Consensus       347 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  425 (521)
                      .|.|+++. +.++.+.++..+...+....+....+++.|| .+.+       +  ....+....++..+.+...++.+..
T Consensus       231 ~p~~~~~~-~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~-------~--~~~~~~~~~~~~~~~l~~~~~~~~~  300 (400)
T PRK11646        231 LPIMVNDI-AGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLE-------H--RLMAGLLIMSLSMFPIGMVSNLQQL  300 (400)
T ss_pred             hhhhHHhh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh-------H--HHHHHHHHHHHHHHHHHHhhhHHHH
Confidence            89999885 4467778888777776666555555555554 4333       1  1223333333444444334444333


Q ss_pred             HHHHHHHHHHHhhhhhhhHHHHHhhhc-cchhhHHhHHHHHHHHHHHHHHHHHHHHhhcccc---hHHHHHHHHHHHHHH
Q 009978          426 SAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGS---FQGFLLLTSLLYFLS  501 (521)
Q Consensus       426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~---~~~~~~~~~~~~~~~  501 (521)
                      .....+.....+...+.......+..| +++|+++|+.+....+|..+||.+.|.+.|..++   ....+...+++.+++
T Consensus       301 ~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~~~~~~~~~~~~~~~~~~  380 (400)
T PRK11646        301 FTLICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKALNQPELPWMMLGIIGLIT  380 (400)
T ss_pred             HHHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHhhcCCcchHHHHHHHHHHHH
Confidence            322222222223344455555556555 7999999999999999999999999999998642   345666656666555


Q ss_pred             HHHHHH
Q 009978          502 ALFYII  507 (521)
Q Consensus       502 ~~~~~~  507 (521)
                      .+....
T Consensus       381 ~~~~~~  386 (400)
T PRK11646        381 LLALYW  386 (400)
T ss_pred             HHHHHH
Confidence            554443

>PRK15011 sugar efflux transporter B; Provisional

Probab=100.00  E-value=9.6e-31  Score=257.14  Aligned_cols=362  Identities=14%  Similarity=0.102  Sum_probs=248.1

Q ss_pred             HHHHhhhhhhhhhhhhh-hhhhhcCCcchhhHHHHHHHH-HHHHhhhhhHHHHhHhcchHHH-HHHHHHHHHHHhhhhhc
Q 009978          108 LALCNADRVVMSVAIVP-LSLAHGWSRSFSGIVQSSFLW-GYLVSPIAGGTLVDYYGGKIIM-AWGVALWSLATFLTPWA  184 (521)
Q Consensus       108 ~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~g~~~s~~~~-~~~i~~~~~G~l~dr~Grr~~~-~~~~~~~~~~~~l~~~~  184 (521)
                      .++.........+.+|. +.+++|.|++++|++.+...+ +..++++++|+ .||+||||.+ ..+.++.+++..+.+++
T Consensus        24 ~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~~~  102 (393)
T PRK15011         24 AFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFAWN  102 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHHHh
Confidence            45555555556666655 577899999999999876655 55555555555 9999999875 45556666777777777


Q ss_pred             cccchHHHHHHHHHHhhhhcchhhHHHHHHHhcCCchhh--HHHHHHHHhhhhhhhHHHHHHHHHhhhccCchhHHHHHH
Q 009978          185 ADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTER--ARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFG  262 (521)
Q Consensus       185 ~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r--~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gw~~~f~~~~  262 (521)
                        ++++.+++.+.+.|...+...+...+++.++.++++|  +...++.+.+.++|.++||++++++.+++|||..|++.+
T Consensus       103 --~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~  180 (393)
T PRK15011        103 --RNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAA  180 (393)
T ss_pred             --hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHH
Confidence              8888876665555544456788888888988866555  345578889999999999999999999999999999998


Q ss_pred             HHHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHHhhccccccCCCCCCCCCCchHHHHHhc-chHHHHHHHHHHHHHHHH
Q 009978          263 LSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSK-MPTWSIIVANAMHSWGFF  341 (521)
Q Consensus       263 ~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~  341 (521)
                      +..++..+..+...||.+++++... +                   +.    +.   ..++ +..+......+.......
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~-~-------------------~~----~~---~~~~~~~~~~~~~~~~~~~~~~~  233 (393)
T PRK15011        181 VAFIVCGVMVWLFLPSMRKELPLAT-G-------------------TL----EA---PRRNRRDTLLLFVICTLMWGTNS  233 (393)
T ss_pred             HHHHHHHHHHHhhcCccCCCCcccc-c-------------------cc----cc---cccccccHHHHHHHHHHHHHHHH
Confidence            8877776666666666543221100 0                   00    00   0011 222333333344444555


Q ss_pred             HHHHHHHHHHHHHhCCCcccchhHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHhccch
Q 009978          342 VILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKS  421 (521)
Q Consensus       342 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  421 (521)
                      .+..+.|.|+++.+|+++.+.+.+.+...++.+++.++.|++.||+++|+       ..  ..+.......+......++
T Consensus       234 ~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~-------~~--~~~~~~~~~~~~~~~~~~~  304 (393)
T PRK15011        234 LYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRF-------LM--RVAAVAGVCFYAGMLMAHS  304 (393)
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHH-------HH--HHHHHHHHHHHHHHHHHhh
Confidence            56678999998888999999998888777788889999999999999882       12  2222222222222222333


Q ss_pred             hHHHHHHHHHHHHHHhhhhhhhHHHHHhhhccchhhHHhHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHH
Q 009978          422 PVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLS  501 (521)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~  501 (521)
                      .+..+...++.....+...+....+..+..|+++|++.++++...++|..++|.+.|.+.|..| +...+.+.+++.+++
T Consensus       305 ~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g-~~~~~~~~~~~~~~~  383 (393)
T PRK15011        305 PAILLGLQLLNAIYIGILGGIGMLYFQDLMPGQAGSATTLYTNTSRVGWIIAGSLAGIVAEIWN-YHAVFWFALVMIIAT  383 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHH
Confidence            3333333333322333333344556678888889999999999999999999999999999887 888888888887777


Q ss_pred             HHHHHHhc
Q 009978          502 ALFYIIFS  509 (521)
Q Consensus       502 ~~~~~~~~  509 (521)
                      .+..+..+
T Consensus       384 ~~~~~~~~  391 (393)
T PRK15011        384 LFCLLRIK  391 (393)
T ss_pred             HHHHHhhc
Confidence            77666553

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=100.00  E-value=4e-31  Score=258.82  Aligned_cols=361  Identities=14%  Similarity=0.053  Sum_probs=274.8

Q ss_pred             HHHHHHHHhhhhhhhhhhhhhhhhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHH----HHHHHHHHHHHh
Q 009978          104 LALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIM----AWGVALWSLATF  179 (521)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~----~~~~~~~~~~~~  179 (521)
                      +.+.++..+.......+.+|.+.+++|.|..++|++.+++.+...++++++|+++||+||++..    .++..+..+  .
T Consensus         9 l~~~~~~~~~~~~~~~p~l~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~--~   86 (382)
T TIGR00902         9 LALGFFGYFCAYGIFLPFFPAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAA--A   86 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH--H
Confidence            4455666667777888999999999999999999999999999999999999999999985433    222222222  2


Q ss_pred             hhhhccccchHHHHHHHHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHhhhccCchhHHH
Q 009978          180 LTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFV  259 (521)
Q Consensus       180 l~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gw~~~f~  259 (521)
                      .+..+  ++++.+++.|+++|.+.+...|...++..++  +++|++++|......++|.+++|++++.+.+.+|||..|+
T Consensus        87 ~~~~~--~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~  162 (382)
T TIGR00902        87 FSAGA--HNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILA  162 (382)
T ss_pred             HHHhh--hhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHH
Confidence            33355  8899999999999999888889988887765  4788999999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHHhhccccccCCCCCCCCCCchHHHHHhcchHHHHHHHHHHHHHH
Q 009978          260 IFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWG  339 (521)
Q Consensus       260 ~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  339 (521)
                      +.++..++. +......|+.+++++.                   +  +++....+++++++|+|++|...+..++....
T Consensus       163 ~~~~~~~~~-~~~~~~~~~~~~~~~~-------------------~--~~~~~~~~~~~~~l~~~~~~~~l~~~~l~~~~  220 (382)
T TIGR00902       163 ILTAGLAFM-LIGFLIKPTIPPKDAI-------------------P--EDESQGDSAFIALLKNPMNLRFLAAVCLIQGA  220 (382)
T ss_pred             HHHHHHHHH-HHHHHcCCCCCCCccc-------------------c--ccccccchhHHHHHcChHHHHHHHHHHHHHHH
Confidence            876553332 2223333321111110                   0  00111233567899999999999988988888


Q ss_pred             HHHHHHHHHHHHHHHhCCCcccchhHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHhcc
Q 009978          340 FFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAA  419 (521)
Q Consensus       340 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (521)
                      ...+..+.|.|+++ .|.++.+.+....+..++.+++..+.+++.||++.|         ..+.++.+...+....+...
T Consensus       221 ~~~~~~~~~~~l~~-~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~---------~~l~~~~~~~~~~~~~~~~~  290 (382)
T TIGR00902       221 HAAYYGFSAIYWQA-AGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSAR---------DLLLISAIACVGRWAIIGAI  290 (382)
T ss_pred             HHHHHHHHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHH---------HHHHHHHHHHHHHHHHHHhH
Confidence            88999999999988 899999999999988888899999999999999888         34456666666666666666


Q ss_pred             chhHHHHHHHHHHHHHHhhhhhhhHHHHHhhhccchhhHHhHHHH-HHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHH
Q 009978          420 KSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGISNT-AGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLY  498 (521)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~  498 (521)
                      ++.+..+...++.....+...+....+.++.+++++++.+++++. ...+|..++|.++|++.|+.| + ..|...+++.
T Consensus       291 ~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g-~-~~~~~~~~~~  368 (382)
T TIGR00902       291 EAFPLIFLLQILHCGTFAVCHLAAMRYIAAQPGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLG-A-GTFVFMAIIA  368 (382)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-H-HHHHHHHHHH
Confidence            666655555555555555666666666677755688999999874 567999999999999999987 5 6677777766


Q ss_pred             HHHHHH
Q 009978          499 FLSALF  504 (521)
Q Consensus       499 ~~~~~~  504 (521)
                      +++.++
T Consensus       369 ~~~~~~  374 (382)
T TIGR00902       369 AAAFFL  374 (382)
T ss_pred             HHHHHH
Confidence            665444

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK11010 ampG muropeptide transporter; Validated

Probab=100.00  E-value=1.2e-30  Score=262.08  Aligned_cols=379  Identities=15%  Similarity=0.145  Sum_probs=275.1

Q ss_pred             HHHHHHHHHHHhhhhhhhhhhhhhhhhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHh-----cchHH-HHHHHHHH
Q 009978          101 VSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYY-----GGKII-MAWGVALW  174 (521)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~-----Grr~~-~~~~~~~~  174 (521)
                      ...+.+..+..+.........+|.+.++.|.+..++|.+ +.....+ ++++++|+++||+     ||||. +.++.+..
T Consensus        14 ~~~~~~l~~~~gl~~~~~~~~l~~~l~~~g~~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~   91 (491)
T PRK11010         14 SAILLILGFASGLPLALTSGTLQAWMTVENIDLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLL   91 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHHHH
Confidence            334455556666667788889999999999999999997 4444444 5899999999999     99885 66777777


Q ss_pred             HHHHhhhhhcc-ccchHHHHHHHHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHhhh-cc
Q 009978          175 SLATFLTPWAA-DTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMS-QA  252 (521)
Q Consensus       175 ~~~~~l~~~~~-~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~-~~  252 (521)
                      +++..++++.. .++++.+.+.+++.|++.+...+...+++.|++|+++|+++.++...+..+|.++++.++.++.+ ..
T Consensus        92 ~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~  171 (491)
T PRK11010         92 LVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYL  171 (491)
T ss_pred             HHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            77776666642 25788899999999999999999999999999999999999999999999999999999999988 57


Q ss_pred             CchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHHhhccccccCCCCCCCCCCchHHHHHhcchHHHHHHH
Q 009978          253 GIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVA  332 (521)
Q Consensus       253 gw~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  332 (521)
                      |||..|++.+++.++..+..++ .||+++..+. ++                   ..++....++++.++++..|...+.
T Consensus       172 GWr~~f~i~a~l~ll~~l~~~~-~~e~~~~~~~-~~-------------------~~~~~~~~~l~~~~~~~~~~~~ll~  230 (491)
T PRK11010        172 GWQGMYWLMAALLIPCIIATLL-APEPTDTIPV-PK-------------------TLEQAVVAPLRDFFGRNNAWLILLL  230 (491)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHh-cCCCcccccc-cc-------------------chhhhHHHHHHHHHcCcCHHHHHHH
Confidence            9999999998877766554443 4554321110 00                   0000112356778888888877766


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCcccchhHhH-HHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHH-HHHH
Q 009978          333 NAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSA-VPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGF-IAPG  410 (521)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~-~~~~  410 (521)
                      .++..........+.+.|+.+.+|++..+.+.... ...++.+++.+++|++.||+++|+       ........ .+..
T Consensus       231 ~~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~-------~l~i~~~l~~l~~  303 (491)
T PRK11010        231 IVLYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFR-------ALMIFGILQGVSN  303 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-------HHHHHHHHHHHHH
Confidence            66666666677778888887778999999999874 556788999999999999999872       12211111 1111


Q ss_pred             HHHHHHhcc-chhHHHHHHHHHHHHHHhhhhhhhHHHHHhhhc-cchhhHHhHHHHHHHHHHHHHHHHHHHHhhcccchH
Q 009978          411 IALIGLTAA-KSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQ  488 (521)
Q Consensus       411 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~  488 (521)
                      .....+... ++.+......++.....+...+.......+..+ +..++.+|+.+....+|..+++.+.|.+.|..| |.
T Consensus       304 l~~~~l~~~~~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G-~~  382 (491)
T PRK11010        304 AGYWLLSITDKNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHG-WP  382 (491)
T ss_pred             HHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-hH
Confidence            111112222 232222222233222233333445566666666 488999999999999999999999999999987 99


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcc
Q 009978          489 GFLLLTSLLYFLSALFYIIFST  510 (521)
Q Consensus       489 ~~~~~~~~~~~~~~~~~~~~~~  510 (521)
                      ..|.+.+++.+.+.++....++
T Consensus       383 ~~f~~~~~~~l~~l~~~~~~~~  404 (491)
T PRK11010        383 TFYLFSVAAAVPGLLLLLVCRQ  404 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999988888777766654

>TIGR00898 2A0119 cation transport protein

Probab=100.00  E-value=6.1e-32  Score=275.22  Aligned_cols=377  Identities=16%  Similarity=0.103  Sum_probs=265.3

Q ss_pred             hhhhhhhhhhcCC---cchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHHHHHHHhhhhhccccchHHHHHHH
Q 009978          120 VAIVPLSLAHGWS---RSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMR  196 (521)
Q Consensus       120 ~~~~~~~~~~~~s---~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~r  196 (521)
                      +..|.+.+|++++   +.+.+++.+++.++..+++++.|+++||+|||+++.++.++.+++.++.+++  ++++.+++.|
T Consensus       110 ~~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~r  187 (505)
T TIGR00898       110 TFSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFS--PNYTVFLVFR  187 (505)
T ss_pred             cccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHc--ccHHHHHHHH
Confidence            5678899999999   9999999999999999999999999999999999999999999999999998  9999999999


Q ss_pred             HHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHhc
Q 009978          197 AVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSAT  276 (521)
Q Consensus       197 ~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gw~~~f~~~~~~~~i~~i~~~~~~  276 (521)
                      ++.|++.+...+...+++.|++|+++|+++.++...+..+|.++++.++..+.+   ||+.|++.+++.++..+.. +..
T Consensus       188 ~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~---wr~~~~~~~i~~~~~~~~~-~~~  263 (505)
T TIGR00898       188 LLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPD---WRWLQLAVSLPTFLFFLLS-WFV  263 (505)
T ss_pred             HHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHH-Hhc
Confidence            999999999999999999999999999999999999999999999998877643   9999999998877766555 556


Q ss_pred             CCCCCCCC-CCchhHHHHHHHhhcc----ccc-----c--CCCCCCCCCCchHHHHHhcchHHHHHHHHHHHHHHHHHHH
Q 009978          277 SSTPDRHP-QISKYELEYILREKQK----PLL-----M--GNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVIL  344 (521)
Q Consensus       277 ~~~~~~~~-~~~~~~~~~~~~~~~~----~~~-----~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  344 (521)
                      ||+|+... +.+.++.....++..+    ...     .  +++..++....++++++++|.++...+...+.++......
T Consensus       264 ~esp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  343 (505)
T TIGR00898       264 PESPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTTAFSY  343 (505)
T ss_pred             CCChHHHHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHHHHhCChHHHHHHHHHHHHHHHHHHHH
Confidence            77664321 1111221111111000    000     0  0000011123467889999988877766655544443333


Q ss_pred             HHHHHHHHHHhCCCcccchhHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHhccch--h
Q 009978          345 SWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKS--P  422 (521)
Q Consensus       345 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~  422 (521)
                      ...+.+..+ .+.+.   .......++..+++.++.+++.||+|||         .....+.++.++..+.+...+.  .
T Consensus       344 ~~~~~~~~~-~~~~~---~~~~~~~~~~~i~~~~~~~~l~dr~grr---------~~~~~~~~~~~~~~l~~~~~~~~~~  410 (505)
T TIGR00898       344 YGLVLDLGN-LGGNI---YLDLFISGLVELPAKLITLLLIDRLGRR---------YTMAASLLLAGVALLLLLFVPVDLY  410 (505)
T ss_pred             HHHhccccc-cCCCh---HHHHHHHHHHHHHHHHHHHHHHHHhCCH---------HHHHHHHHHHHHHHHHHHHcCCCch
Confidence            333333333 44442   2333455677788899999999999988         2333333333333333332222  2


Q ss_pred             HHHHHHHHHHHHHHhhhhhhhHHHHHhhhc-cchhhHHhHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHH
Q 009978          423 VMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLS  501 (521)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~  501 (521)
                      +......+++.+......+....+..|..| +.|+++.|+.++...+|++++|.+.+ +.+ .+ ....+.+.+++.+++
T Consensus       411 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~-~~-~~~~~~~~~~~~~~~  487 (505)
T TIGR00898       411 FLRTALAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-LGE-KW-LFLPLVLFGGLALLA  487 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-HHH-HH-HhhHHHHHHHHHHHH
Confidence            333333334444444455566677778887 58999999999999999999999998 443 34 556677777777777


Q ss_pred             HHHHHHhccCccccccc
Q 009978          502 ALFYIIFSTGERVNFDE  518 (521)
Q Consensus       502 ~~~~~~~~~~~~~~~~~  518 (521)
                      .++.+++++.++++.+|
T Consensus       488 ~~~~~~lpet~~~~l~~  504 (505)
T TIGR00898       488 GILTLFLPETKGVPLPE  504 (505)
T ss_pred             HHHHHcCcCCCCCCCCC
Confidence            66666666655555443

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=100.00  E-value=5.9e-31  Score=255.43  Aligned_cols=346  Identities=30%  Similarity=0.470  Sum_probs=292.8

Q ss_pred             HHHHHHHHhhhhhhhhhhhhhhhhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHHHHHHHhhhhh
Q 009978          104 LALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPW  183 (521)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~l~~~  183 (521)
                      +.+..+..........+..|.+.+++|.++.+.+++.+...++..+++++.|+++||+|||+.+.++.++..++.+++.+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~   83 (352)
T cd06174           4 LFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAF   83 (352)
T ss_pred             HHHHHHHHHHhhhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHH
Confidence            45566777778888899999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             ccccchHHHHHHHHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHhhhccCchhHHHHHHH
Q 009978          184 AADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGL  263 (521)
Q Consensus       184 ~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gw~~~f~~~~~  263 (521)
                      .  ++++.+++.|++.|++.+...+...+++.|++|+|+|++.+++.....++|..+++.+++.+.+..+||+.+++.++
T Consensus        84 ~--~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (352)
T cd06174          84 A--SSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAI  161 (352)
T ss_pred             h--ccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            8  89999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             HHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHHhhccccccCCCCCCCCCCchHHHHHhcchHHHHHHHHHHHHHHHHHH
Q 009978          264 SGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVI  343 (521)
Q Consensus       264 ~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  343 (521)
                      ..++..+...+..                                               |.++...+..++........
T Consensus       162 ~~~~~~~~~~~~~-----------------------------------------------~~~~~~~~~~~~~~~~~~~~  194 (352)
T cd06174         162 LGLLLALLLLFLL-----------------------------------------------RLLLLLALAFFLLSFGYYGL  194 (352)
T ss_pred             HHHHHHHHHHHHH-----------------------------------------------HHHHHHHHHHHHHHhHHHHH
Confidence            8777665554431                                               45667777788888888899


Q ss_pred             HHHHHHHHHHHhCCCcccchhHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHhccchhH
Q 009978          344 LSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPV  423 (521)
Q Consensus       344 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  423 (521)
                      ..+.|.+.++.+|.+..+.+.......++..++.++.+++.||+++|+       . ....+.....+........++.+
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-------~-~~~~~~~~~~i~~~~~~~~~~~~  266 (352)
T cd06174         195 LTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRR-------L-LLLIGLLLAALGLLLLALAPSLA  266 (352)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------H-HHHHHHHHHHHHHHHHHHhccHH
Confidence            999999999977999999999999999999999999999999999882       0 33444444444444444444444


Q ss_pred             HHHHHHHHHHHHHhhhhhhhHHHHHhhhc-cchhhHHhHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHH
Q 009978          424 MASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSA  502 (521)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~  502 (521)
                      ......++.....+...+.......+..| ++|++..|+.+....++..+++.+.|.+.|..| +...+.+.+++.+++.
T Consensus       267 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~-~~~~~~~~~~~~~i~~  345 (352)
T cd06174         267 LLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGG-YGGVFLILAALALLAA  345 (352)
T ss_pred             HHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-cchHHHHHHHHHHHHH
Confidence            44444444444455556666677777776 799999999999999999999999999999877 8889998888887777


Q ss_pred             HHHHH
Q 009978          503 LFYII  507 (521)
Q Consensus       503 ~~~~~  507 (521)
                      +..+.
T Consensus       346 i~~~~  350 (352)
T cd06174         346 LLLLL  350 (352)
T ss_pred             HHhee
Confidence            66543

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=100.00  E-value=1.4e-30  Score=255.89  Aligned_cols=365  Identities=15%  Similarity=0.117  Sum_probs=266.9

Q ss_pred             HHHHHHHHHHHhhhhhhhhhhhhhhhhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHHHHHHHhh
Q 009978          101 VSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFL  180 (521)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~l  180 (521)
                      +.+++...+..++.....++.+|.+++++|.++.+.|++.+.+.+++.+++++.|++.||+|||+++.++.++++++.++
T Consensus         5 ~~~~~~~f~~~G~~~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l   84 (410)
T TIGR00885         5 FALITSLFALWGFANDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFL   84 (410)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH
Confidence            45566677777788888899999999999999999999999999999999999999999999999999999999999887


Q ss_pred             hhhcc-ccchHHHHHHHHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHhhhc--------
Q 009978          181 TPWAA-DTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQ--------  251 (521)
Q Consensus       181 ~~~~~-~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~--------  251 (521)
                      +..+. .++++.+++.|++.|+|.|...+..+.++.+..|+++|++.+++.+...++|..+||.+++.+...        
T Consensus        85 ~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~  164 (410)
T TIGR00885        85 FWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQD  164 (410)
T ss_pred             HHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhh
Confidence            54331 268999999999999999999999999999999999999999999999999999999999887532        


Q ss_pred             ------------------cCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHHhhccccccCCCCCCCCC
Q 009978          252 ------------------AGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATV  313 (521)
Q Consensus       252 ------------------~gw~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (521)
                                        .+||++|++.+++.++..++..+. +. |+.+++                   ++  ++.+.
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~-~~-p~~~~~-------------------~~--~~~~~  221 (410)
T TIGR00885       165 VLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLT-KM-PALNHS-------------------DA--KQISF  221 (410)
T ss_pred             hhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cC-CCCCcc-------------------cc--ccccc
Confidence                              369999999988776654443322 21 211100                   00  00111


Q ss_pred             CchHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCcccchhHhHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 009978          314 IPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVY-HIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGT  392 (521)
Q Consensus       314 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~  392 (521)
                      .++.++++|+|.++...+..+++........++++.|.++.. +.+....+...+....+..+|+++++++.||+++|+ 
T Consensus       222 ~~~~~~~~~~~~~~~~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~-  300 (410)
T TIGR00885       222 SASLSRLARIRHYREGVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHK-  300 (410)
T ss_pred             hhhHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH-
Confidence            224557889999999888888888888888899999997632 333344455566667788999999999999998872 


Q ss_pred             CcchhHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhhhhhhhHHHHHhhhccchhhHHhHHHHHHHHHHHH
Q 009978          393 SVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGISNTAGTFAAIL  472 (521)
Q Consensus       393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~  472 (521)
                              ++.+...+..+..+.....+.....+...+++. +.+..+|..+....+..+++..++.+...+. .+|+.+
T Consensus       301 --------~l~i~~~~~~~~~ll~~~~~~~~~~~~l~~~gl-f~s~~fp~i~sl~~~~~g~~~~~~s~~l~~~-~~Gga~  370 (410)
T TIGR00885       301 --------VLMAYAIIGMALCLGSIFAGGHVGLYCLTLCSA-FMSLMFPTIYGIALKGLGQDTKYGAAGLVMA-IIGGGI  370 (410)
T ss_pred             --------HHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH-HHHHHHHHHHHHHHhhhhhhhhhhHHHHHHH-Hhccch
Confidence                    233333333333333333333333333344444 4444446666666666665554433333332 399999


Q ss_pred             HHHHHHHHhhcc-----cchHHHHHHHHHHHH
Q 009978          473 GTVGAGFFVELV-----GSFQGFLLLTSLLYF  499 (521)
Q Consensus       473 ~~~~~g~l~~~~-----g~~~~~~~~~~~~~~  499 (521)
                      +|++.|.+.|..     |+++..|++...+.+
T Consensus       371 ~p~l~G~~~d~~~~~~~~~~~~~~~~~~~~~~  402 (410)
T TIGR00885       371 VPPLQGFIIDMKEIAAAPAVNTSFILPLLCFA  402 (410)
T ss_pred             HHHHHHHHHHHhcccccCccchHHHHHHHHHH
Confidence            999999999954     347777776554443

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=100.00  E-value=9.3e-32  Score=262.67  Aligned_cols=346  Identities=17%  Similarity=0.197  Sum_probs=257.0

Q ss_pred             HHHHHHHHHhhhhhhhhhhhhh-hhhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHHHHHHHhhh
Q 009978          103 MLALALALCNADRVVMSVAIVP-LSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLT  181 (521)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~l~  181 (521)
                      ..++..+........+.+..|. +.+++|+|+.+.+++.+++.++..+++++.|+++||+|||+++.++.++..++.+++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~   84 (366)
T TIGR00886         5 FSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWA   84 (366)
T ss_pred             HHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHH
Confidence            4556666777777889999995 889999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcccc-chHHHHHHHHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHhhh----------
Q 009978          182 PWAADT-SLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMS----------  250 (521)
Q Consensus       182 ~~~~~~-~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~----------  250 (521)
                      +++  + +++.+++.|+++|++.+. .+...+++.|++|+++|++++++.....++|..+++.+++.+..          
T Consensus        85 ~~~--~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~  161 (366)
T TIGR00886        85 GLA--VQSYSVLLLLRLFIGIAGGS-FASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPA  161 (366)
T ss_pred             HHH--hhhHHHHHHHHHHHHHhchh-hHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccc
Confidence            888  8 999999999999999654 56678999999999999999999998888888888888776654          


Q ss_pred             ccCchhHH-HHHHHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHHhhccccccCCCCCCCCCCchHHHHHhcchHHHH
Q 009978          251 QAGIFGPF-VIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSI  329 (521)
Q Consensus       251 ~~gw~~~f-~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (521)
                      ..+||+.| +..+++.++..++.+...++.|+++++.++.+       ...    .....++...+..++.+++|.++..
T Consensus       162 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~  230 (366)
T TIGR00886       162 HLAWGWAFVIVPAGILLLPALLIFFVGADTPPGKPATGKLS-------FKG----ARWSVGTGALGDQLKVFRDRHTWIL  230 (366)
T ss_pred             cccccchhHHHHHHHHHHHHHHHHHhcccCCcccccchhcc-------ccc----ccccccchhHHHHHHHHhccchhhH
Confidence            24899999 44455555444444444455443221100000       000    0000011111255678889999988


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHH
Q 009978          330 IVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAP  409 (521)
Q Consensus       330 ~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~  409 (521)
                      .+..++.......+..+.|.|+++.+|+++.+++.+..+..+..++++++.|++.||+++|+       ...........
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~-------~~~~~~~~~~~  303 (366)
T TIGR00886       231 ALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGAR-------KLLMSFLGVAM  303 (366)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccch-------hHHHHHHHHHH
Confidence            88888777777888899999999988999999999888999999999999999999999872       23333333333


Q ss_pred             HHHHHHHhccc--hhHHHHHHHHHHHHHHhhhhhhhHHHHHhhhccchhhHHhHHHHHHHHH
Q 009978          410 GIALIGLTAAK--SPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGISNTAGTFA  469 (521)
Q Consensus       410 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g  469 (521)
                      +..++.+....  +....+....+.....+...........+..|+++|+++|+.+...++|
T Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g  365 (366)
T TIGR00886       304 GAFLVVLGLVSPLSLAVFIVLFVALFFFSGAGNGSTFALVPHIFRRATGAVSGLVGAIGNLG  365 (366)
T ss_pred             HHHHHHhcCCCcchHHHHHHHHHHHHHHhccccchhhhcchhhchhhcccHHHHHHHhccCC
Confidence            33333333332  3333333334444444555566667777888899999999999887765

>PRK10054 putative transporter; Provisional

Probab=100.00  E-value=5e-31  Score=258.66  Aligned_cols=376  Identities=14%  Similarity=0.094  Sum_probs=264.7

Q ss_pred             HHHHHHHhhhhhhhhhhhh-hhhhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHHHHHHHhhhhh
Q 009978          105 ALALALCNADRVVMSVAIV-PLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPW  183 (521)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~l~~~  183 (521)
                      ....++.........+.+| ++.+++|++..++|++.+.+.++..+++++.|+++||+|||+++.++.++.+++.++..+
T Consensus        13 ~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~   92 (395)
T PRK10054         13 LASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPL   92 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHH
Confidence            3445555555556666655 456789999999999999999999999999999999999999999999999999888888


Q ss_pred             ccccchHHHHHHHHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHhhhccCchhHHHHHHH
Q 009978          184 AADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGL  263 (521)
Q Consensus       184 ~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gw~~~f~~~~~  263 (521)
                      .  ++++.++++|++.|.+.+...+...++..|.+|+++|++++++.....++|..+||++++++.+ .+|+..|++.++
T Consensus        93 ~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~  169 (395)
T PRK10054         93 V--NNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAI  169 (395)
T ss_pred             H--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHH
Confidence            8  8899888899999888787788899999999999999999999999999999999999999875 699999999888


Q ss_pred             HHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHHhhccccccCCCCCCCCCCchHHHHHhcchHHHHHHHHHHHHHHHHHH
Q 009978          264 SGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVI  343 (521)
Q Consensus       264 ~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  343 (521)
                      +.++..++..+..++.++++++   ++                +     ...+.++.+++|.++...+..++.......+
T Consensus       170 ~~~i~~i~~~~~~~~~~~~~~~---~~----------------~-----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  225 (395)
T PRK10054        170 CSAFPLVFIQIWVQRSEKAIAT---ET----------------G-----SVWSPSVLLQDKALLWFTCSGFLASFVSGAF  225 (395)
T ss_pred             HHHHHHHHHHHHHhcccccccc---ch----------------h-----hhhhhhhhccCceehHHHHHHHHHHHHHHHh
Confidence            7776655544444333221110   00                0     0012256788999988888777777766666


Q ss_pred             HHHHHHHHHHH--hCCCcccchhHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHhc-cc
Q 009978          344 LSWMPIYFNFV--YHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTA-AK  420 (521)
Q Consensus       344 ~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  420 (521)
                      ..+.+.|..+.  .+.+....+.+.....+.........+++.||.++|         .....+.....+.+..+.. .+
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~---------~~l~~~~~~~~~~~~~~~~~~~  296 (395)
T PRK10054        226 ASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIR---------PLMTAGTLCFVIGLVGFIFSGN  296 (395)
T ss_pred             hhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCch---------hHHHHHHHHHHHHHHHHHHcch
Confidence            66777777543  344555566666666666666677888888988777         2223333333333333322 23


Q ss_pred             hhHHHHHHHHHHHHHHhhhhhhhHHHHHhhhc-cchhhHHhHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHH
Q 009978          421 SPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYF  499 (521)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~  499 (521)
                      +.+...+...+.........+.......+..| +.++++++..+ ...+|..+||.++|.+.|+.| +...|++.+.+..
T Consensus       297 ~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g-~~~~~~~~~~~~~  374 (395)
T PRK10054        297 SLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLP-PWSLFVILALAIV  374 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcC-hhhHHHHHHHHHH
Confidence            33322222222222223334455556666666 58899988755 677999999999999999997 7777766555444


Q ss_pred             HHHHHHHHhccCccccccccc
Q 009978          500 LSALFYIIFSTGERVNFDEAA  520 (521)
Q Consensus       500 ~~~~~~~~~~~~~~~~~~~~~  520 (521)
                      ++.++.  +++.+.++|.+.+
T Consensus       375 ~~~~~~--~~~~~~~~~~~~~  393 (395)
T PRK10054        375 AAWLLM--LKGMRARPWGQPA  393 (395)
T ss_pred             HHHHHH--HhccccCcccCCc
Confidence            333332  3455555665544

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=100.00  E-value=6.8e-32  Score=267.10  Aligned_cols=405  Identities=20%  Similarity=0.185  Sum_probs=325.1

Q ss_pred             ccchhHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHH
Q 009978           93 ITSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVA  172 (521)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~  172 (521)
                      ...+.|.+++..++...........++.+.+.++++++.+.++++|+.++......+.+++.+.+.||+|.|++.+.|.+
T Consensus        40 dGG~gWvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~  119 (509)
T KOG2504|consen   40 DGGWGWVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGL  119 (509)
T ss_pred             CCCeeeeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHH
Confidence            44567888888888888888888888899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhhccccchHHHHHH-HHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHhhhc
Q 009978          173 LWSLATFLTPWAADTSLLALLAM-RAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQ  251 (521)
Q Consensus       173 ~~~~~~~l~~~~~~~~~~~l~~~-r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~  251 (521)
                      +..++.++..++  +++|.+++. -++.|+|.|+.+.....++..+| +++|+.+.|+...+.++|..+-|.+..++.+.
T Consensus       120 v~~~g~~lssF~--~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF-~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~  196 (509)
T KOG2504|consen  120 VAALGLLLSSFA--TSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYF-EKKRALATGIAVSGTGVGTVVFPPLLKYLLSK  196 (509)
T ss_pred             HHHHHHHHHHHH--hhHHHHHHHHHHHhhccchhhhcchhhhhhhHh-HHHHHHHHhhhhccCCcceeeHHHHHHHHHHH
Confidence            999999999999  999887654 78999999999999999999999 58999999999999999999999999999999


Q ss_pred             cCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHHH---H--------hh-ccc---c---------ccCCC
Q 009978          252 AGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYIL---R--------EK-QKP---L---------LMGNK  307 (521)
Q Consensus       252 ~gw~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~---~--------~~-~~~---~---------~~~~~  307 (521)
                      +|||+.+++.+.+.+-..+......|..++..+. ..++.+...   +        +. .+.   .         ..+.+
T Consensus       197 ~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (509)
T KOG2504|consen  197 YGWRGALLIFGGISLNVLVAGALLRPLSPPKKPN-EEKDLRNSAASVESTPKPVELRISERDSGLKKLSLSNLATLKRGP  275 (509)
T ss_pred             hCcHHHHHHHHHHHHHHHHHHHHcCCCCcCCCch-hhhhhccccccccccccccccccccCCCCCCcccccchhhhhhCC
Confidence            9999999999998877777777776644433222 000000000   0        00 000   0         00000


Q ss_pred             CCCC--CCCchH----HHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhHhHHHHHHHHHHHHHHH
Q 009978          308 HKPA--TVIPPF----RRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGG  381 (521)
Q Consensus       308 ~~~~--~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g  381 (521)
                      .+..  ......    .+++++|.++.+.+...+...++.....++|.|..+ .|++..+++.+.++.++..++++++.|
T Consensus       276 ~~~~~~~~~~~~~~~d~~ll~~~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~-~g~~~~~aa~l~Siigi~~i~gRi~~G  354 (509)
T KOG2504|consen  276 DKWRNSPLQAFLSMLDLSLLKDPKFLLLALSNLFAYLGFNVPFVYLPSYAKS-LGLSSNDAAFLLSIIGVSDIIGRIILG  354 (509)
T ss_pred             ccccccchhhhhhhhhHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCChhhhHHHHHHHHHhhhhhhhhhh
Confidence            0000  111122    478999999999999999999999999999999997 899999999999999999999999999


Q ss_pred             HHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhhhhhhhHHHHHhhhc-cchhhHHh
Q 009978          382 LLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHG  460 (521)
Q Consensus       382 ~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g  460 (521)
                      ++.|+...+       +..+..++++..++..+..+...+.+.+....++.+...+...........+..+ ++...++|
T Consensus       355 ~laD~~~~~-------~~~~~~~~ll~~gl~~~~~p~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~G  427 (509)
T KOG2504|consen  355 LLADKPGIR-------ALVLFLLTLLIAGLARLFLPFATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYG  427 (509)
T ss_pred             hhcCccccc-------hHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHH
Confidence            999998754       3356667777777777777776666555555444444444444455455556655 78899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHhc
Q 009978          461 ISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYIIFS  509 (521)
Q Consensus       461 ~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  509 (521)
                      +...+..++..+||++.|.+.|..|+|...|++++++.+++..++++.+
T Consensus       428 l~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~~~  476 (509)
T KOG2504|consen  428 LLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLILR  476 (509)
T ss_pred             HHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHHhH
Confidence            9999999999999999999999999999999999999999988777665

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=100.00  E-value=6.5e-33  Score=257.18  Aligned_cols=380  Identities=16%  Similarity=0.181  Sum_probs=291.2

Q ss_pred             cchhHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHH
Q 009978           94 TSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVAL  173 (521)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~  173 (521)
                      .+..+..+.++++...++.++++.+....+.+.+.+|++++..|++.+.+.+.+.+.+|++|+++|||+||+++.+|..+
T Consensus        28 ~~~~~~~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~i  107 (493)
T KOG1330|consen   28 MKSPTLTLVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFI  107 (493)
T ss_pred             cccchHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHH
Confidence            34456788889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhhccccchHHHHHHHHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHhhhccC
Q 009978          174 WSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAG  253 (521)
Q Consensus       174 ~~~~~~l~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g  253 (521)
                      +.++.++++++  ..+|+++++|.+.|+|.+...+..+++++|.+|.++|++.+++++....+|..+|.+.+..+....+
T Consensus       108 W~~Av~~~~fs--~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~  185 (493)
T KOG1330|consen  108 WTLAVFASGFS--NHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTF  185 (493)
T ss_pred             HHHHHHHHHHH--HHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCcc
Confidence            99999999999  9999999999999999999999999999999999999999999999999999999999999988766


Q ss_pred             -chhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHHhhccccccCCCCCCCCCCchHHHHHhcchHHHHHHH
Q 009978          254 -IFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVA  332 (521)
Q Consensus       254 -w~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  332 (521)
                       |||.|++.+++.++..++.+++.+|+++...+..+.+             .+.........++++.+.+++.+....+.
T Consensus       186 ~Wr~af~~~avl~vi~~~L~~~f~~eP~rga~~~~~~~-------------~~~~~~~ts~~kDl~~l~~~~v~v~~sl~  252 (493)
T KOG1330|consen  186 WWRWAFRGSAVLGVIVGLLVFLFVREPERGARDEVDGE-------------NKMVKPFTSVWKDLKVLAKIKVFVLSSLG  252 (493)
T ss_pred             ceEEEEEeehHHHHHHHHHHHhhccCcccccccccccC-------------CcCCCCccchHHHHHHHHccCceeeehHH
Confidence             9999999999999998888888777654322111100             01112334456777788888888777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH---hCCCcccchhHhHHHHHHHHHHHHHHHHHHHHHHhcCCCc--chhHHHHHHHHHH
Q 009978          333 NAMHSWGFFVILSWMPIYFNFV---YHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSV--TLTRKILQSIGFI  407 (521)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~--~~~~~~~~~~~~~  407 (521)
                      +....+....+..|.|.+....   .|.+.....++..+...++.+|.+++|.++||+.+.....  ..........+..
T Consensus       253 ~~a~~fv~Gs~sww~p~~~~~~~~~~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~  332 (493)
T KOG1330|consen  253 IIAAQFVIGSLSWWAPAFIYYSYELIGFDHNATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAP  332 (493)
T ss_pred             HHHHHHhccccchhhhhHHHHHHHHhCCccccchhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhh
Confidence            7777777777777777665432   3556666777778888899999999999999987642221  1111123333333


Q ss_pred             HHHHHHHHHhccc--hhHHHHHHHHHHHHHHhhhhhhhHHHHH-hhhccchhhHHhHHHHHHHH-HHHHHHHHHHHHhhc
Q 009978          408 APGIALIGLTAAK--SPVMASAWLTLAIGMKSFSHSGFLVNLQ-EIAPQYSGVLHGISNTAGTF-AAILGTVGAGFFVEL  483 (521)
Q Consensus       408 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~g~~~~~~~~-g~~~~~~~~g~l~~~  483 (521)
                      .....+..+....  +.+..+++++++.......+....-+.. -++|++|.+++++...+..+ |.+-+|.+.|.+.|.
T Consensus       333 ~s~~~L~~~~~~~~~s~~~~~il~~~g~~~~~~~~a~n~~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGilsd~  412 (493)
T KOG1330|consen  333 LSIPFLFLFPAFTSSSMIFGLILFLVGETISWFNWATNNPIFLEVVPPSRRTTAYALDTVFEHIFGDAASPYIVGILSDK  412 (493)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccccccceeeEecCcccccHHHHHHHHHHHHhccCCCcceehhHHHH
Confidence            4444444333332  2333444444555555555554444434 44568999999998888774 555555599999987


Q ss_pred             ccchH
Q 009978          484 VGSFQ  488 (521)
Q Consensus       484 ~g~~~  488 (521)
                      .-++.
T Consensus       413 l~g~~  417 (493)
T KOG1330|consen  413 LRGYK  417 (493)
T ss_pred             hhCCC
Confidence            54344

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=100.00  E-value=7.2e-30  Score=250.06  Aligned_cols=357  Identities=12%  Similarity=0.046  Sum_probs=260.1

Q ss_pred             HHHHhhhhhhhhhhhhhhhhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcch----HHHHHHHHHHHHHHhhhhh
Q 009978          108 LALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGK----IIMAWGVALWSLATFLTPW  183 (521)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr----~~~~~~~~~~~~~~~l~~~  183 (521)
                      ++..+.....+.+.+|.+.+++|.|..++|++.+++.++..++++++|+++||+|||    +.+.+...+.  .......
T Consensus        13 ~~~~~~~~g~~~p~l~~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~~~~~~~   90 (382)
T PRK11128         13 YFGYFFAYGVFLPFWSVWLKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--AVAFWFG   90 (382)
T ss_pred             HHHHHHHHHHHhhhHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--HHHHHHh
Confidence            444445556888899999999999999999999999999999999999999999984    3333222222  2222333


Q ss_pred             ccccchHHHHHHHHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHhhhccCchhHHHHHHH
Q 009978          184 AADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGL  263 (521)
Q Consensus       184 ~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gw~~~f~~~~~  263 (521)
                      .  +++|.+++.|++.|++.+...+...+++.++  +++|+++++......++|..+||++++++.+++|||..|++.++
T Consensus        91 ~--~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~  166 (382)
T PRK11128         91 A--HSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWILTA  166 (382)
T ss_pred             c--ccHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHH
Confidence            4  7899999999999999888899888888877  45788889999999999999999999999999999999988876


Q ss_pred             HHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHHhhccccccCCCCCCCCCCchHHHHHhcchHHHHHHHHHHHHHHHHHH
Q 009978          264 SGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVI  343 (521)
Q Consensus       264 ~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  343 (521)
                      ..++..+. ....|+.+++.+    +                 +++.++...++++++|+|.+|...+..++........
T Consensus       167 ~~~~~~~~-~~~~~~~~~~~~----~-----------------~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~  224 (382)
T PRK11128        167 GVASMLLG-QLLRPTIMPQGE----S-----------------RQQESAGWPAWKALLKEPTVWRFLLCVSLLQGSHAAY  224 (382)
T ss_pred             HHHHHHHH-HHccCCCCCccc----c-----------------ccccccccchHHHHHcChhHHHHHHHHHHHHHHhHhH
Confidence            55444333 223333211100    0                 0001112346789999999999888888777777778


Q ss_pred             HHHHHHHHHHHhCCCcccchhHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHhccchhH
Q 009978          344 LSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPV  423 (521)
Q Consensus       344 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  423 (521)
                      ..+.|.|+++ .|.+..+.+...+...++.++..++.+++.||++++         ..+..+....++..+.+...++.+
T Consensus       225 ~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~---------~~l~~~~~~~~~~~~~~~~~~~~~  294 (382)
T PRK11128        225 YGFSAIYWQA-AGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSAR---------DLLLLSAICGVVRWGLMGSTTALP  294 (382)
T ss_pred             HHHHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH---------HHHHHHHHHHHHHHHHHHhhhhHH
Confidence            8888999977 799999999998888888888889999999999888         233344444444444455555555


Q ss_pred             HHHHHHHHHHHHHhhhhhhhHHHHHhhhccchhhHHhHHHHH-HHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHH
Q 009978          424 MASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGISNTA-GTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSA  502 (521)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~-~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~  502 (521)
                      ..+...++.....+...+....+..+..++++++..+..+.. ..+|..+||.+.|.+.|..| . ..++..+++.+.+.
T Consensus       295 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g-~-~~~~~~~~~~~~~~  372 (382)
T PRK11128        295 WLIVIQILHCGTFTVCHLAAMRYIAARPGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLG-A-GVFWVMALVALPAL  372 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-H-HHHHHHHHHHHHHH
Confidence            554444444443444455555666666666778889988744 56777999999999999987 4 45666665555544


Q ss_pred             HH
Q 009978          503 LF  504 (521)
Q Consensus       503 ~~  504 (521)
                      ++
T Consensus       373 ~~  374 (382)
T PRK11128        373 FI  374 (382)
T ss_pred             HH
Confidence            33

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=100.00  E-value=4.8e-31  Score=258.06  Aligned_cols=293  Identities=19%  Similarity=0.242  Sum_probs=249.3

Q ss_pred             cccchhHHHHHHHHHHHHHHhhhhhhhhh-hhhhhhhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHH
Q 009978           92 FITSERVKVVSMLALALALCNADRVVMSV-AIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWG  170 (521)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~  170 (521)
                      ..++-.+.++..++..++....+...++- .+..+.+|.+....+.+.+.+++.++++++.+++|.+.||++..+.+...
T Consensus        38 l~~K~dl~i~~~~~~~y~~~~~d~~si~~a~l~g~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~  117 (495)
T KOG2533|consen   38 LLRKLDLFILPFLCYLYFHAYLDKSSIVNASLSGLKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVS  117 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcchhcchhHHHcCCccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHH
Confidence            34445566666677777777777665443 35557789999999999999999999999999999999999999988888


Q ss_pred             HHHHHHHHhhhhhccccchHHHHHHHHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHhh-
Q 009978          171 VALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILM-  249 (521)
Q Consensus       171 ~~~~~~~~~l~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~-  249 (521)
                      .+++++..++....  +|++.+++.|++.|+..+..+|....+++.|+.+++|+..++++.+..++|.++|.+++..+. 
T Consensus       118 ~~~w~~~~~~~~~~--~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~  195 (495)
T KOG2533|consen  118 GILWGLFGFLTAAV--HSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFK  195 (495)
T ss_pred             HHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhh
Confidence            88888888777777  999999999999999999999999999999999999999999999999999999999998863 


Q ss_pred             -----hccCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHHhhccccccCCCCCCCCCCchHHHHHhcc
Q 009978          250 -----SQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKM  324 (521)
Q Consensus       250 -----~~~gw~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (521)
                           ...||||.|++.++++++..++.++..|+.|++..-.+++|++...++.++..  .....++.....+++.+++|
T Consensus       196 ~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~~~~fl~~~ek~~~~~~~~~~~--~~~~~~~~~~~~~~~a~~dp  273 (495)
T KOG2533|consen  196 LNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPSKAWFLTDEEKELVVERLRESP--SGGIENKFKWKGFKEALKDP  273 (495)
T ss_pred             hcCCCCcCCceeehhHHHHHHHHHHheEEEEecCChhhccccchHHHHHHHHHHHhcc--CCCcccccCHHHHHHHHhch
Confidence                 35689999999999999999999999999998776666666554433333221  11111225677889999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhHhHHHHHHHHHHHHHHHHHHHHHH
Q 009978          325 PTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLI  388 (521)
Q Consensus       325 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~  388 (521)
                      .+|...++.++.....+++.+|+|.|+++..|++..++..+.....++++++.+++|+++||++
T Consensus       274 ~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~  337 (495)
T KOG2533|consen  274 GVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLK  337 (495)
T ss_pred             hHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999966799999999999999999999999999999953

>TIGR00896 CynX cyanate transporter

Probab=100.00  E-value=1.4e-30  Score=252.97  Aligned_cols=333  Identities=16%  Similarity=0.185  Sum_probs=247.6

Q ss_pred             hhhhhhhhhhhhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHHHHHHHhhhhhccccchHHHHHH
Q 009978          116 VVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAM  195 (521)
Q Consensus       116 ~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~  195 (521)
                      ..+++.+|.+.+++|.|.++.|++.+++.++..+++++.|+++||+|||+++.++.++..++.+.+ ..  ++++.+++.
T Consensus        17 ~~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~--~~~~~l~~~   93 (355)
T TIGR00896        17 TSVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SA--PGTALLFAG   93 (355)
T ss_pred             ccCcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-Hh--ccHHHHHHH
Confidence            467889999999999999999999999999999999999999999999999999998888887776 66  788999999


Q ss_pred             HHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHhhhcc--CchhHHHHHHHHHHHHHHHHH
Q 009978          196 RAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQA--GIFGPFVIFGLSGFLWVLVWL  273 (521)
Q Consensus       196 r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~--gw~~~f~~~~~~~~i~~i~~~  273 (521)
                      |++.|++.+...+....++.|++| ++|++++++++....+|..+++.+++.+.+..  +||+.|.+.+++.++..... 
T Consensus        94 ~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~~~~~~-  171 (355)
T TIGR00896        94 TALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALLALLAW-  171 (355)
T ss_pred             HHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH-
Confidence            999999999888888889999986 68999999999999999999999999887765  39999887776544432221 


Q ss_pred             HhcCCCCCCCCCCchhHHHHHHHhhccccccCCCCCCCCCCchHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009978          274 SATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNF  353 (521)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  353 (521)
                        .++.+++++.                   +    ++......++.+|+|.++...+..++....+.....++|.|+++
T Consensus       172 --~~~~~~~~~~-------------------~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~  226 (355)
T TIGR00896       172 --IPQVRRRVAA-------------------N----QTTTRLTPVRIWRSPLAWQVTVFFGLQSGLYYSLIGWLPAILIS  226 (355)
T ss_pred             --hhhhccccCC-------------------C----CCCCCCCCchhhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              2222111100                   0    00011223467788888887777777777788888999999988


Q ss_pred             HhCCCcccchhHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHH
Q 009978          354 VYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAI  433 (521)
Q Consensus       354 ~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  433 (521)
                       .|++..+.+...+...++.++++++.|++.||+++|+        .....+....++..+.+....+........+.+.
T Consensus       227 -~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~  297 (355)
T TIGR00896       227 -HGASAATAGSLLALMQLAQAASALLIPALARRVKDQR--------GIVAVLAVLQLVGLCGLLFAPMHGLWAWALVLGL  297 (355)
T ss_pred             -cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccch--------HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence             6999999999999999999999999999999996542        1222222222222222222222222222233333


Q ss_pred             HHHhhhhhhhHHHH-Hhhhc-cchhhHHhHHHHHHHHHHHHHHHHHHHHhhcccchH
Q 009978          434 GMKSFSHSGFLVNL-QEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQ  488 (521)
Q Consensus       434 ~~~~~~~~~~~~~~-~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~  488 (521)
                      +. +...+...... .+..+ ++++...++.+...+++..++|.+.|.+.|+.|+|.
T Consensus       298 ~~-g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g~~~  353 (355)
T TIGR00896       298 GQ-GGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISGNWL  353 (355)
T ss_pred             hh-hhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence            33 23333333333 33333 577899999999999999999999999999988654

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=100.00  E-value=8.2e-30  Score=253.60  Aligned_cols=379  Identities=20%  Similarity=0.174  Sum_probs=292.6

Q ss_pred             HHHHHHHHHHHhhhhhhhhhhhhhhhhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHHHHHHHhh
Q 009978          101 VSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFL  180 (521)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~l  180 (521)
                      +..++.+.+++.+...+.....+.+..+..-|+..++++.++..+...+.++++|.++||++|||+++.+.++.++..++
T Consensus        12 Fr~lw~a~~iS~lG~~~~~va~~wlv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~   91 (524)
T PF05977_consen   12 FRRLWIAQLISNLGDWMQTVALAWLVTQLTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALL   91 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHH
Confidence            33455667777777778888888888888999999999999999999999999999999999999999998877665443


Q ss_pred             hhh---ccccchHHHHHHHHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHhhhccCchhH
Q 009978          181 TPW---AADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGP  257 (521)
Q Consensus       181 ~~~---~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gw~~~  257 (521)
                      .++   ....+.+.+++.-++.|++.+...|+.++++.+..|+++...++++.+...++..++||.++|.+...+|-.+.
T Consensus        92 L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~  171 (524)
T PF05977_consen   92 LAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFFGAAAA  171 (524)
T ss_pred             HHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence            322   22257888999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHHhhccccccCCCCCCCCCCchHHHHHhcchHHHHHHHHHHHH
Q 009978          258 FVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHS  337 (521)
Q Consensus       258 f~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  337 (521)
                      |.+.++..++.++......++.+++..  .+                  +...+..+..++.+.++|.+...++..++..
T Consensus       172 f~inalsfl~~i~~l~~~~~~~~~~~~--~~------------------e~~~~~l~~G~ryv~~~~~l~~~l~~~~~~~  231 (524)
T PF05977_consen  172 FLINALSFLISILALLRWKPPPPPSSL--PR------------------ERFFSALREGLRYVRSSPPLRSVLLRSFLFN  231 (524)
T ss_pred             HHHHHHHHHHHHHHHHHcccccccccc--ch------------------hhhhhhHHHHHHHHhcchHHHHHHHHHHHHH
Confidence            999887766654444433322211110  00                  0011223345666777887777766666666


Q ss_pred             HHHHHHHHHHHHHHHHHhCCCcccchhHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHh
Q 009978          338 WGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLT  417 (521)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (521)
                      +....+...+|.+.++.+|.++...|++.+..+++.++|.++.+++.+|++++         .++..+.+..++.++.+.
T Consensus       232 l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~---------~lv~~~~~~~a~~~~~la  302 (524)
T PF05977_consen  232 LFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSR---------RLVLLASLLFALALLLLA  302 (524)
T ss_pred             HhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcc---------hhhHHHHHHHHHHHHHHh
Confidence            66666777899999999999999999999999999999999999988887665         233445556666666677


Q ss_pred             ccchhHHHHHHHHHHHHHHhhhhhhhHHHHHhhhc-cchhhHHhHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHH
Q 009978          418 AAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSL  496 (521)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~  496 (521)
                      ..++.+.....+++.+...........+..++..| +.+|++++++.++...+..+|..+.|.+.+..| ....+.+.++
T Consensus       303 l~~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g-~~~al~~a~~  381 (524)
T PF05977_consen  303 LSPSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFG-VRTALLIAGA  381 (524)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-HHHHHHHHHH
Confidence            76776665555555444444444455555555555 699999999999999999999999999999998 7777887777


Q ss_pred             HHHHHHHHHHHhc
Q 009978          497 LYFLSALFYIIFS  509 (521)
Q Consensus       497 ~~~~~~~~~~~~~  509 (521)
                      ..+++.++....+
T Consensus       382 ~lll~~~~~~~~~  394 (524)
T PF05977_consen  382 ALLLSALIALRFP  394 (524)
T ss_pred             HHHHHHHHHHHhc
Confidence            7666666655543

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=100.00  E-value=6.1e-29  Score=245.25  Aligned_cols=376  Identities=11%  Similarity=0.091  Sum_probs=263.3

Q ss_pred             HHHHHHHhhhhhhhhhhhhhhhhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHh-----cchH-HHHHHHHHHHHHH
Q 009978          105 ALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYY-----GGKI-IMAWGVALWSLAT  178 (521)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~-----Grr~-~~~~~~~~~~~~~  178 (521)
                      ...++..+.........+|.+.++.|+|.+++|++..+...  .+.++++|+++||+     |||| .+.++.++.+++.
T Consensus         5 ~~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~   82 (402)
T PRK11902          5 LLLGFASGLPLALTSGTLQAWMTVEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASI   82 (402)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHH
Confidence            44566777777788889999999999999999999776665  58899999999999     8876 7888888887777


Q ss_pred             hhhhhcc-ccchHHHHHHHHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHhhhc-cCchh
Q 009978          179 FLTPWAA-DTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQ-AGIFG  256 (521)
Q Consensus       179 ~l~~~~~-~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~-~gw~~  256 (521)
                      .++++.. ..+++.+++..++.++..+...++..+++.|++|+++|+++.++...+.++|.++++.+++.+.+. .|||.
T Consensus        83 ~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~  162 (402)
T PRK11902         83 AAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGN  162 (402)
T ss_pred             HHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHH
Confidence            7766652 235777888888888888889999999999999999999999999999999999999999999885 59999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHHhhccccccCCCCCCCCCCchHHHHHhcchHHHHHHHHHHH
Q 009978          257 PFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMH  336 (521)
Q Consensus       257 ~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  336 (521)
                      .|++.++..++..+.. +..||+++.+++. + +                  .+++..+++++++|+|.++..++..++.
T Consensus       163 ~f~i~a~~~l~~~l~~-~~~~e~~~~~~~~-~-~------------------~~~~~~~~~~~l~~~~~~~~~l~~~~l~  221 (402)
T PRK11902        163 TYLLMAGLMLAGALTT-LWAPEPEVPARPP-R-S------------------LGEAVVGPLRDFFSRRGAWALLLLIVLY  221 (402)
T ss_pred             HHHHHHHHHHHHHHHH-HhcCCCccccccc-c-h------------------hHHHHHHHHHHHHhCcCHHHHHHHHHHH
Confidence            9999888776654433 3444443221100 0 0                  0001224577889999998877776666


Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCcccchhHhHHHH-HHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHH-HHHHHHHH
Q 009978          337 SWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPW-SVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGF-IAPGIALI  414 (521)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  414 (521)
                      .........+.+.++.+.+|+++.+.+++....+ ++.+++.++++++.||+++|+       ........ ......+.
T Consensus       222 ~~~~~~~~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~-------~l~~~~~~~~l~~l~~~  294 (402)
T PRK11902        222 KLGDAFAGSLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYR-------SLMLFGVLQAVSNLGYW  294 (402)
T ss_pred             HhHHHHHHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHH-------HHHHHHHHHHHHHHHHH
Confidence            6554444445566676768999999998876654 457889999999999999872       22211111 11112222


Q ss_pred             HHhcc-chhHHHHHHHHHHHHHHhhhhhhhHHHHHhhhc-cchhhHHhHHHHHHHHHHHHHHHHHHHHhhcccchHHHHH
Q 009978          415 GLTAA-KSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLL  492 (521)
Q Consensus       415 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~  492 (521)
                      .+... ++.+.......+.....+............... +..++..+..+....++..+++.+.|.+.|..| +...|.
T Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~G~l~~~~G-~~~~f~  373 (402)
T PRK11902        295 VLAVTPKHLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSATQYALLSALASVGRVYVGPTSGYLVEAYG-WPGFYL  373 (402)
T ss_pred             HHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-hHHHHH
Confidence            22222 333333333222222333333333333333333 244556677777778888878889999999998 899999


Q ss_pred             HHHHHHHHHHHHHHHhccC
Q 009978          493 LTSLLYFLSALFYIIFSTG  511 (521)
Q Consensus       493 ~~~~~~~~~~~~~~~~~~~  511 (521)
                      ..+++.++++++.+..+++
T Consensus       374 ~~~~~~~~~~~~~~~~~~~  392 (402)
T PRK11902        374 MTVVIALPGLALLWLMRGT  392 (402)
T ss_pred             HHHHHHHHHHHHHHHHhhh
Confidence            9888887776666554443

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.98  E-value=1.3e-29  Score=250.18  Aligned_cols=358  Identities=17%  Similarity=0.128  Sum_probs=254.2

Q ss_pred             HHHhhhhhhhhhhhhhhhhhhc--CCcchhhHHHHH-----HHHHHHHhhhhhHHHHhHhcchHHHHHHHHHHHHHHhhh
Q 009978          109 ALCNADRVVMSVAIVPLSLAHG--WSRSFSGIVQSS-----FLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLT  181 (521)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~--~s~~~~g~~~s~-----~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~l~  181 (521)
                      +.++++++.++...+.+.+++.  .++.+.+.+.+.     ..++..+++++.|+++||+|||+++.++.++..++.+++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~   82 (394)
T TIGR00883         3 AVEWFDFYLYGFAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLI   82 (394)
T ss_pred             chhHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence            4567788888888888877753  556666665543     233345688999999999999999999999999999999


Q ss_pred             hhccccchH--------HHHHHHHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHhh----
Q 009978          182 PWAADTSLL--------ALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILM----  249 (521)
Q Consensus       182 ~~~~~~~~~--------~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~----  249 (521)
                      +++  ++++        .+++.|+++|++.+...+...+++.|++|+++|++..++.+.+..+|.++++.++..+.    
T Consensus        83 ~~~--~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~  160 (394)
T TIGR00883        83 GLL--PSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLG  160 (394)
T ss_pred             hhC--CChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            888  6764        47889999999999999999999999999999999999999999999999998887654    


Q ss_pred             ----hccCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHHhhccccccCCCCCCCCCCchHHHHHhcch
Q 009978          250 ----SQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMP  325 (521)
Q Consensus       250 ----~~~gw~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (521)
                          +.++||+.|++.+++.++..+.. ...+|+++.++     +.                ++++....++++.+++++
T Consensus       161 ~~~~~~~~w~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-----~~----------------~~~~~~~~~~~~~~~~~~  218 (394)
T TIGR00883       161 DDALLEWGWRIPFLVSAVLVLIGLYLR-RNLEETPVFEK-----AQ----------------EKHKKKRGPIRETLTKHR  218 (394)
T ss_pred             HHHhhccchHHHHHHHHHHHHHHHHHH-HhcCCChhHHH-----HH----------------hccccccCCHHHHHHhch
Confidence                35689999988776655543332 22333321110     00                001112234566777765


Q ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHH
Q 009978          326 --TWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQS  403 (521)
Q Consensus       326 --~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~  403 (521)
                        ++...+..++..........+.|.|+++.+|.+..+.+.......++..++.++.+++.||+++|+        ....
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~--------~~~~  290 (394)
T TIGR00883       219 KPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRP--------VLII  290 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHH--------HHHH
Confidence              777777777777777788899999998878999999999999999999999999999999999882        1221


Q ss_pred             HHHHHHHHH--HH-HHhccchhHHHHHHHHHHHHHHhhhhhhhHHHHHhhhc-cchhhHHhHH-HHHHHHHHHHHHHHHH
Q 009978          404 IGFIAPGIA--LI-GLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGIS-NTAGTFAAILGTVGAG  478 (521)
Q Consensus       404 ~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~-~~~~~~g~~~~~~~~g  478 (521)
                      .........  .+ .+...++.+......++.....+...+.......+..| +.|+++.++. +....+|..++|.+.|
T Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g  370 (394)
T TIGR00883       291 FTVLAALLAVPLLMALLDSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAA  370 (394)
T ss_pred             HHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHH
Confidence            221111111  11 12222333333333333333344445556666777776 5899999985 4455688889999999


Q ss_pred             HHhhcccchHHHHHHHHHHH
Q 009978          479 FFVELVGSFQGFLLLTSLLY  498 (521)
Q Consensus       479 ~l~~~~g~~~~~~~~~~~~~  498 (521)
                      .+.|+.|.+...++...++.
T Consensus       371 ~l~~~~g~~~~~~~~~~~~~  390 (394)
T TIGR00883       371 ALVAMTGDWYAIGYYLAALA  390 (394)
T ss_pred             HHHHHcCcchhHHHHHHHHH
Confidence            99998875655555554443

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.97  E-value=1.4e-28  Score=225.29  Aligned_cols=376  Identities=16%  Similarity=0.146  Sum_probs=285.5

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHHHHHHH
Q 009978           99 KVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLAT  178 (521)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~~~~  178 (521)
                      ..+..+....++.++......+.+|.+.+.++++..|.+++..+++.++.+.+++.|++.+|+|+|+.+++++.++++++
T Consensus        13 ~~~v~~t~lFfl~G~~~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~   92 (422)
T COG0738          13 LAFVLLTSLFFLWGFITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGA   92 (422)
T ss_pred             eHHHHHHHHHHHHHHHhhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            34555666677778888889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhc-cccchHHHHHHHHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHhhhc------
Q 009978          179 FLTPWA-ADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQ------  251 (521)
Q Consensus       179 ~l~~~~-~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~------  251 (521)
                      .++.-+ ...++..++++-++.|.|.+...++.+.++....++++..+.+++.+...++|.++||++++.+...      
T Consensus        93 ~lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~  172 (422)
T COG0738          93 ALFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTM  172 (422)
T ss_pred             HHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhcc
Confidence            887422 1268888999999999999999999999999999998889999999999999999999999988762      


Q ss_pred             -------------cCchhHHHHHHHHHHHHHHHHHHhc-CCCCCCCCCCchhHHHHHHHhhccccccCCCCCCCCCCchH
Q 009978          252 -------------AGIFGPFVIFGLSGFLWVLVWLSAT-SSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPF  317 (521)
Q Consensus       252 -------------~gw~~~f~~~~~~~~i~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (521)
                                   -.|+++|...+...++..+.....+ |+.++..+                       +..+......
T Consensus       173 ~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~~~~-----------------------~~~~~~~~~~  229 (422)
T COG0738         173 SAAQILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQVAAP-----------------------SLGASGSAGL  229 (422)
T ss_pred             CHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCcccc-----------------------cccccccchH
Confidence                         1377888888777666555444332 22211111                       0011111156


Q ss_pred             HHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcchh
Q 009978          318 RRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLT  397 (521)
Q Consensus       318 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~  397 (521)
                      .+++++|+++...++.+++.........|++.|+.+..|.+..+++...+..+.+.++|++++.++.+|+...       
T Consensus       230 ~~l~~~~~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~-------  302 (422)
T COG0738         230 SSLFQNKHLRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPE-------  302 (422)
T ss_pred             HHHHhChHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHH-------
Confidence            6899999999999999999999999999999999998899999999999999999999999999999998776       


Q ss_pred             HHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhhhhhhhHHHHHhhhccchhhHHhHHHHHHHHHHHHHHHHH
Q 009978          398 RKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGA  477 (521)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~  477 (521)
                        ..+.....+....++.....++.+...... +.+.+.+..+|...+...+..|++... .|....+..+|+++.|.+.
T Consensus       303 --k~Laf~a~~~ill~~~~~l~~g~v~~~~l~-~ig~F~simfPTIfslal~~l~~~ts~-~s~~l~maivGGAiiP~l~  378 (422)
T COG0738         303 --KYLAFYALIAILLLLAVALIGGVVALYALF-LIGLFNSIMFPTIFSLALKNLGEHTSV-GSGLLVMAIVGGAIIPPLQ  378 (422)
T ss_pred             --HHHHHHHHHHHHHHHHHHHhcChHHHHHHH-HHHHHhHHHHHHHHHHHHhccCccccc-cceeeeeheecchHHHHHH
Confidence              222333333333333333444444444333 444455566677776666666654443 3444566778999999999


Q ss_pred             HHHhhcccchHHHHHHHHHHHHHHHHHHHHhc
Q 009978          478 GFFVELVGSFQGFLLLTSLLYFLSALFYIIFS  509 (521)
Q Consensus       478 g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  509 (521)
                      |++.|..| ....+.....++.+-++.+.+..
T Consensus       379 G~i~d~~g-~~~~~~~~pllc~lyV~~~~~~~  409 (422)
T COG0738         379 GVIADMFG-IQLTFLIVPLLCYLYVLFFALIG  409 (422)
T ss_pred             HHHHHhhh-hHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999998 44554444444444443333333

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.97  E-value=3.2e-29  Score=248.82  Aligned_cols=377  Identities=15%  Similarity=0.076  Sum_probs=242.8

Q ss_pred             HHHHHHhhhhhhhhhhhhhh-hhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHHHHHHHhhhhh-
Q 009978          106 LALALCNADRVVMSVAIVPL-SLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPW-  183 (521)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~l~~~-  183 (521)
                      +..++..+......+.+|.+ .+++|+|+.++|++.+++.++..++++++|+++||+|||++++++..+.+++...... 
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~   96 (420)
T PRK09528         17 LFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIY   96 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444555565554 5559999999999999999999999999999999999999998876665544332111 


Q ss_pred             cccc-----chHHHHHHHHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHhhhccCchhHH
Q 009978          184 AADT-----SLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPF  258 (521)
Q Consensus       184 ~~~~-----~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gw~~~f  258 (521)
                      ...+     .+...++++++.|.+.....+....+..+.  .+++++.++......++|..++|++++.+.+ .+|+..|
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~-~~~~~~f  173 (420)
T PRK09528         97 VFAPLLQYNILLGAIVGGIYLGFGFLAGAGAIEAYIERV--SRRSGFEYGRARMWGSLGWALCAFIAGILFN-INPQINF  173 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhhHHHHH--HhhccccchhhHHhhhHHHHHHHHHHHHHHh-cCchHhH
Confidence            1001     111123334444444333334444443322  3456778889999999999999999999876 4899999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHHhhccccccCCCCCCCCCCchHHHHHhcchHHHHHHHHHHHHH
Q 009978          259 VIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSW  338 (521)
Q Consensus       259 ~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  338 (521)
                      ++.+++.++..++.+...++++++... ++++               .+++++...++.++.+|+|.++.+.+..+....
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---------------~~~~~~~~~~~~~~~l~~~~~~~l~l~~~~~~~  237 (420)
T PRK09528        174 WLGSGSALILLVLLFFAKPDAPSTAKV-ANAL---------------GANASAVSLKDALALLKLPKFWFLVLYVIGVAC  237 (420)
T ss_pred             HHHHHHHHHHHHHHhcccccccchhhh-ccch---------------hcccccccHHHHHHHccCCCeEeehHHHHHHHH
Confidence            998887776665555544443322110 0000               000111223456678889988776666655555


Q ss_pred             HHHHHHHHHHHHHHHHh---CCCcccchhHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHH
Q 009978          339 GFFVILSWMPIYFNFVY---HIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIG  415 (521)
Q Consensus       339 ~~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  415 (521)
                      .+.....+.|.|+.+.+   +.+..+.+.+.++..++..++.++.|++.||+++|+         ....+..+.++....
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~---------~~~~~~~l~~~~~~l  308 (420)
T PRK09528        238 FYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKN---------ALLLAGTIMAVRIIG  308 (420)
T ss_pred             HHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcch---------hhHHHHHHHHHHHHH
Confidence            55556667788777643   455567788888888888999999999999999983         223333333334344


Q ss_pred             HhccchhHHHHHHHHHHHHHHhhhhhhhHHHHHhhhc-cchhhHHhH-HHHHHHHHHHHHHHHHHHHhhcccchHHHHHH
Q 009978          416 LTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGI-SNTAGTFAAILGTVGAGFFVELVGSFQGFLLL  493 (521)
Q Consensus       416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~-~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~  493 (521)
                      ....++.+..+...++..............+..+..| +.+++..+. +++...+|.+++|.+.|++.|..| |...|..
T Consensus       309 ~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G-~~~~f~~  387 (420)
T PRK09528        309 SGFATGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIG-FQGTYLI  387 (420)
T ss_pred             HHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhC-chHHHHH
Confidence            4444555544333333322222333333444455444 677777665 677788999999999999999988 9999998


Q ss_pred             HHHHHHHHHHHHHHhccC
Q 009978          494 TSLLYFLSALFYIIFSTG  511 (521)
Q Consensus       494 ~~~~~~~~~~~~~~~~~~  511 (521)
                      .+++.++..++.+...++
T Consensus       388 ~~~~~~i~~~~~~~~~~~  405 (420)
T PRK09528        388 LGGIVLLFTLISVFTLSG  405 (420)
T ss_pred             HHHHHHHHHHHHHHHhcC
Confidence            888777666555544433

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.97  E-value=5.1e-28  Score=238.38  Aligned_cols=375  Identities=15%  Similarity=0.082  Sum_probs=255.2

Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhh-hhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHHHHHHHhhh
Q 009978          103 MLALALALCNADRVVMSVAIVPL-SLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLT  181 (521)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~l~  181 (521)
                      .+....++.+.....+.+.+|.+ .+++|.++.+.|++.+++.++..++++++|+++||+|||+.++.+....+++....
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~   85 (396)
T TIGR00882         6 MFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPF   85 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHH
Confidence            34445555666666777777765 45689999999999999999999999999999999999999988776665543322


Q ss_pred             ---hhcc---ccchHHHHHHHHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHhhhccCch
Q 009978          182 ---PWAA---DTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIF  255 (521)
Q Consensus       182 ---~~~~---~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gw~  255 (521)
                         .+..   .+.+..+++.+++.|++.+...+....+..+..  ++++..++......++|.++||++++.+.+ .+|+
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~-~~~~  162 (396)
T TIGR00882        86 FIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVS--RNSNFEYGKARMFGCVGWALCASIAGILFS-IDPQ  162 (396)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhh--hhcccccchhhhhcccHHHHHHHHHhhhhc-cCch
Confidence               1110   012334567788999998888888888877754  334567788888889999999999998865 5999


Q ss_pred             hHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHHhhccccccCCCCCCCCCCchHHHHHhcchHHHHHHHHHH
Q 009978          256 GPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAM  335 (521)
Q Consensus       256 ~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  335 (521)
                      ..|++.+++.++..++.+...++++++++.   ++      .       .+.++++...+++++++|+|.++.+.+..++
T Consensus       163 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~------~-------~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~  226 (396)
T TIGR00882       163 IVFWLGSGFALILMLLLMFAKPKAPSSATV---AN------A-------LGANASAFSLKLALELFRQRKFWMFVLYVVG  226 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCchhhhh---hc------c-------cccccCCCCHHHHHHHHcCCcHHHHHHHHHH
Confidence            999999888777665555444443221100   00      0       0001112233467889999998887777766


Q ss_pred             HHHHHHHHHHHHHHHHHHHh---CCCcccchhHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHH
Q 009978          336 HSWGFFVILSWMPIYFNFVY---HIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIA  412 (521)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~  412 (521)
                      ....+.....+.+.|+++.+   +.+....+...++..+...++.+..+++.||+++|+         ...++..+.++.
T Consensus       227 ~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~---------~l~~~~~l~~l~  297 (396)
T TIGR00882       227 VACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKN---------ALLIAGTIMSVR  297 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------hHHHHHHHHHHH
Confidence            66666667677888888754   445556788888888888889999999999999883         223333333333


Q ss_pred             HHHHhccchhHHHHHHHHHHHHHHhhhhhhhHHHHHhhhc-cchhhHHhH-HHHHHHHHHHHHHHHHHHHhhcccchHHH
Q 009978          413 LIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGI-SNTAGTFAAILGTVGAGFFVELVGSFQGF  490 (521)
Q Consensus       413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~-~~~~~~~g~~~~~~~~g~l~~~~g~~~~~  490 (521)
                      .......++.+......++..............+..+..+ +.+++..+. .+....+|+++++.+.|++.|..| +...
T Consensus       298 ~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G-~~~~  376 (396)
T TIGR00882       298 IIGSSFATTALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIG-FQGA  376 (396)
T ss_pred             HHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcc-cHHH
Confidence            3333334444443333322222222222222233344333 466666665 678889999999999999999988 8999


Q ss_pred             HHHHHHHHHHHHHHHH
Q 009978          491 LLLTSLLYFLSALFYI  506 (521)
Q Consensus       491 ~~~~~~~~~~~~~~~~  506 (521)
                      |.+.+++.++..++..
T Consensus       377 f~~~~~~~~i~~~~~~  392 (396)
T TIGR00882       377 YLVLGCIVLLFTLISV  392 (396)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9998888777665543

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.97  E-value=1e-27  Score=216.09  Aligned_cols=360  Identities=17%  Similarity=0.246  Sum_probs=284.2

Q ss_pred             hhhhhhhhhhhhhhhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHHHHHHHhhhhhccccchHHH
Q 009978          113 ADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLAL  192 (521)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~l~~~~~~~~~~~l  192 (521)
                      -....+++.++.+.+++|+|.+..|++.++..++..+.+++..++..|+|.++.+..++++.+++.++-..   .+.+.+
T Consensus        26 ~~itsvgPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~---~~~~~L  102 (395)
T COG2807          26 PAITSVGPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSL---GGLPLL  102 (395)
T ss_pred             hhhhhhhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhc---ccHHHH
Confidence            45567889999999999999999999999999999999999999999999999999999999999998766   467888


Q ss_pred             HHHHHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHhhhcc-CchhHHHHHHHHHHHHHHH
Q 009978          193 LAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQA-GIFGPFVIFGLSGFLWVLV  271 (521)
Q Consensus       193 ~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~-gw~~~f~~~~~~~~i~~i~  271 (521)
                      +.+-.+.|.|.+...+...+++-+.|| ++-+..+|+|....++|..+++.+...+.++. |||....+-+.++++.++.
T Consensus       103 ~~gt~l~G~gIav~nVLLPslIK~~Fp-k~~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~allAl~~  181 (395)
T COG2807         103 FLGTLLAGAGIAVINVLLPSLIKRDFP-KRVGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALLALLI  181 (395)
T ss_pred             HHHHHHHHhhHHHHHHhhhHHHHhhcc-cchhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999996 67899999999999999999999999988877 7999999999998888777


Q ss_pred             HHHhcCCCCCCCCCCchhHHHHHHHhhccccccCCCCCCCCCCchHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009978          272 WLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYF  351 (521)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  351 (521)
                      ++.-. .+++ ..                        ..+....+-..++|+|..|.+.+.+.+.+..++....|+|.++
T Consensus       182 WlPq~-~r~~-~~------------------------~~~~~~~~~~~vw~~~~aW~vtLfmGlqS~~~Y~~~~WLP~il  235 (395)
T COG2807         182 WLPQA-LREQ-AA------------------------SIATKLVSVRKVWRSPLAWQVTLFMGLQSLLYYIVIGWLPAIL  235 (395)
T ss_pred             Hhhhc-cccc-cc------------------------ccccccccccccccCchhHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            66542 1110 00                        0011111223688999999999999999999999999999999


Q ss_pred             HHHhCCCcccchhHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHH--HhccchhHHHHHHH
Q 009978          352 NFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIG--LTAAKSPVMASAWL  429 (521)
Q Consensus       352 ~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~  429 (521)
                      .| .|+|..++|.+.+...+..+...+....+.+|...++        ...........+.++.  +...+.++..  .+
T Consensus       236 i~-~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r--------~~~~~~~~~~l~G~~G~~~~P~~~~~lw--~~  304 (395)
T COG2807         236 ID-RGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQR--------PLVVLALLLMLVGLVGLLLAPGQLPILW--AL  304 (395)
T ss_pred             HH-cCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccc--------hHHHHHHHHHHHHHHHHHHhhhhHHHHH--HH
Confidence            99 7999999999999999999999999999999865552        2222222222222222  2222333322  34


Q ss_pred             HHHHHHHhhhhhhhHHH-HHhhhccchhhHHhHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHh
Q 009978          430 TLAIGMKSFSHSGFLVN-LQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYIIF  508 (521)
Q Consensus       430 ~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  508 (521)
                      +++.+.++.+......+ .....|+..+.-.|+.+.++++-..+||.+.|++.|..|+|...+.....+.+...+.-+..
T Consensus       305 llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m~i~Gl~a  384 (395)
T COG2807         305 LLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATLLMLIFGLRA  384 (395)
T ss_pred             HHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHHHHHHHhhc
Confidence            45554444443333322 33334568899999999999999999999999999999999999888887777766666655


Q ss_pred             ccCcc
Q 009978          509 STGER  513 (521)
Q Consensus       509 ~~~~~  513 (521)
                      .|++.
T Consensus       385 ~r~~~  389 (395)
T COG2807         385 GRNRY  389 (395)
T ss_pred             chhHH
Confidence            54443

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=1.3e-29  Score=230.06  Aligned_cols=349  Identities=20%  Similarity=0.176  Sum_probs=275.1

Q ss_pred             hhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhhhcc
Q 009978          126 SLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGV  205 (521)
Q Consensus       126 ~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~r~l~G~g~~~  205 (521)
                      .++.+-+++++|++.+.+.+.+.+.+++.|.++||+|+|..+++|++++..+++++++.  ++++.++++|.+||+|.+.
T Consensus        98 ~~~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg--~sy~~l~vAR~LQgvgsA~  175 (464)
T KOG3764|consen   98 AISLDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFG--NSYPMLFVARSLQGVGSAF  175 (464)
T ss_pred             ccCccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHc--chhHHHHHHHHHhhhhHHH
Confidence            44567788999999999999999999999999999999999999999999999999999  9999999999999999999


Q ss_pred             hhhHHHHHHHhcCCchh-hHHHHHHHHhhhhhhhHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCC
Q 009978          206 ALPAMNNMVARWFPQTE-RARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHP  284 (521)
Q Consensus       206 ~~~~~~~~i~~~~~~~~-r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gw~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~  284 (521)
                      ..++..++++|.+|+++ |++++|+...+.++|.++||++||.+.+..|.+.+|++.++++++-..+.++..+..+..+ 
T Consensus       176 ~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~~~-  254 (464)
T KOG3764|consen  176 ADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTEMDP-  254 (464)
T ss_pred             HHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCccccCc-
Confidence            99999999999998764 7999999999999999999999999999999999999999999988877777654432221 


Q ss_pred             CCchhHHHHHHHhhccccccCCCCCCCCCCchHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchh
Q 009978          285 QISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASW  364 (521)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  364 (521)
                                              +......++++++++|.++.........+.........++.+..|.+..+..+.|+
T Consensus       255 ------------------------~~~~~~~~~~~Ll~dP~I~~~agai~~~n~~lafLePtlslwm~e~m~~p~w~~G~  310 (464)
T KOG3764|consen  255 ------------------------DSTEQGTPMWSLLMDPYILLIAGAITFSNSSLAFLEPTLSLWMLETMFTPGWEVGL  310 (464)
T ss_pred             ------------------------cccccCccHHHHHhCchHhhhhcchhhccchHHHhCcccHHHHHHhccCCCcceee
Confidence                                    11223346789999999998888877777778888888899888888855668999


Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHhccchhHHHHHHH-HHHHHHHhhhhhhh
Q 009978          365 FSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWL-TLAIGMKSFSHSGF  443 (521)
Q Consensus       365 ~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  443 (521)
                      .+....+...++..+.|.+.||++..       |......+.+..+..+......++...+++-. .++.+.........
T Consensus       311 ~fLp~~~~y~ig~~lfg~la~k~~~~-------~wl~~~~gl~~~G~~~~~iP~~~~~~~L~vp~~~l~~~i~~~dasl~  383 (464)
T KOG3764|consen  311 AFLPASLSYAIGTNLFGKLADKYPHL-------RWLLSLGGLATVGVSSGPIPFATSIAQLWVPNFGLGFGIGLADASLI  383 (464)
T ss_pred             eecccccchhccCchHHHHHHhcCch-------hHHHHHHHHHHHHHHhchhHhhhhHHHHhhhhHHHHHHHHHHHHHHh
Confidence            98899999999999999999999954       22455566666665555555554443322221 11222111111111


Q ss_pred             HHHHHhhhc---c---chhhHHhHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHhc
Q 009978          444 LVNLQEIAP---Q---YSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYIIFS  509 (521)
Q Consensus       444 ~~~~~~~~~---~---~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  509 (521)
                      ......+.+   +   ..|.++++......+|.++||.++|.+.+..| +.+...+.++..++-.-++.+++
T Consensus       384 P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iG-F~wl~~iig~~n~iyapvl~ll~  454 (464)
T KOG3764|consen  384 PTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIG-FEWLMTIIGILNLIYAPVLLLLR  454 (464)
T ss_pred             hhhHHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchheeehh-HHHHHHHHHHHHHHHHHHHHHHH
Confidence            111111111   2   57899999999999999999999999999999 88877777777666555544443

>TIGR00889 2A0110 nucleoside transporter

Probab=99.97  E-value=1e-27  Score=236.50  Aligned_cols=368  Identities=13%  Similarity=0.027  Sum_probs=248.1

Q ss_pred             HHHHHHHHhhhhhhh-hhhhhhhhhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcc-hHHHHHHHHHHHHHHhhh
Q 009978          104 LALALALCNADRVVM-SVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGG-KIIMAWGVALWSLATFLT  181 (521)
Q Consensus       104 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Gr-r~~~~~~~~~~~~~~~l~  181 (521)
                      +++.+++.+.....+ ++..+.+.+++|++..++|++.+++.++..++++++|+++||+|+ |+++.++.++..++..+.
T Consensus         7 ~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~   86 (418)
T TIGR00889         7 LKFMSFLQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFA   86 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence            345556666666666 445556667799999999999999999999999999999999965 778888888888888888


Q ss_pred             hhccccchHHHHHHHHHHhhhhcchhhHHHHHHHhc--------CCchhhHHHHHHHHhhhhhhhHHHHHHHHHhhhccC
Q 009978          182 PWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARW--------FPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAG  253 (521)
Q Consensus       182 ~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~--------~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g  253 (521)
                      .+.  ++++.+++.|++.|++.+...+...++..++        .....|.+.+|      .+|.++||.+++.+....+
T Consensus        87 ~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l~~~~~  158 (418)
T TIGR00889        87 AQV--TTPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLLDIELS  158 (418)
T ss_pred             HHh--cCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHhcccch
Confidence            887  8899999999999998877777666654322        22223444444      4788999999988843333


Q ss_pred             chhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHHhhccccccCCCCCCCCCCchHHHHHhcchHHHHHHHH
Q 009978          254 IFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVAN  333 (521)
Q Consensus       254 w~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  333 (521)
                      |+ +|++.++..++..++ .+..||.|+.+++.+..                   .++....+.++++|+|.++.+.+..
T Consensus       159 ~~-~f~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~-------------------~~~~~~~~~~~~~k~~~~~~~~~~~  217 (418)
T TIGR00889       159 NI-QLYITAGSSALLGVF-ALTLPDIPVAKSTAKMS-------------------IKVMLGLDAFILFKNKRMAIFFFFS  217 (418)
T ss_pred             hH-HHHHHHHHHHHHHHH-HhcCCCCCCCccccccC-------------------HHHHhhhhHHHHhcCCCeeeHHHHH
Confidence            54 455666655554443 33455544321110000                   0000111345678999988888887


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCc--------ccchhHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHH
Q 009978          334 AMHSWGFFVILSWMPIYFNFVYHIDL--------RQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIG  405 (521)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~g~~~--------~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~  405 (521)
                      ++..........+.+.|+++ .|.++        ...+...++..+..+++.++.+++.||+++|         .++..+
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r---------~~l~~~  287 (418)
T TIGR00889       218 MLLGAPLQITNIFGNGFLHE-FGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIK---------KVMLLS  287 (418)
T ss_pred             HHHHhHHHHHHHhHHHHHHH-hcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcH---------HHHHHH
Confidence            77766666677788888877 56554        4568888888899999999999999999988         333444


Q ss_pred             HHHHHHHHHHHhccc-h---hHHHHHHHHHHHHHHhhhhhhhHHHHHhhhc-cchhhHHhHHH-HHHHHHHHHHHHHHHH
Q 009978          406 FIAPGIALIGLTAAK-S---PVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISN-TAGTFAAILGTVGAGF  479 (521)
Q Consensus       406 ~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~-~~~~~g~~~~~~~~g~  479 (521)
                      .++.++....+.... .   .+..+...++.....+...+....+..+..| +.|++++|+.+ ....+|.++||.+.|.
T Consensus       288 ~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~  367 (418)
T TIGR00889       288 LVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGV  367 (418)
T ss_pred             HHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            444444333333221 1   1222222222222233334444555566666 69999999997 5678999999999999


Q ss_pred             Hhhcccc-----hHHHHHHHHHHHHHHHHHHHHhcc
Q 009978          480 FVELVGS-----FQGFLLLTSLLYFLSALFYIIFST  510 (521)
Q Consensus       480 l~~~~g~-----~~~~~~~~~~~~~~~~~~~~~~~~  510 (521)
                      +.|+.|+     |+..|.+.+++.+++.++.+++.+
T Consensus       368 l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~  403 (418)
T TIGR00889       368 MVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFK  403 (418)
T ss_pred             HHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhC
Confidence            9998653     788888887777666665554433

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.97  E-value=2.3e-28  Score=272.07  Aligned_cols=370  Identities=14%  Similarity=0.053  Sum_probs=251.0

Q ss_pred             HHHHHHHhhhhhhhhhhhh-hhhhhhcCCc-chhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHH---HHHHHHHHHh
Q 009978          105 ALALALCNADRVVMSVAIV-PLSLAHGWSR-SFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAW---GVALWSLATF  179 (521)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~-~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~---~~~~~~~~~~  179 (521)
                      ++..+.+++....+..... .+..+.+.+. ...++..+++.+++.++++++|+++||+|||+++..   ..++..+..+
T Consensus        21 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~  100 (1140)
T PRK06814         21 FFGAFNDNFLKNALVILILYGLSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAI  100 (1140)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444433333322 3334443333 457888899999999999999999999999997643   2222222223


Q ss_pred             hhhhccccchHHHHHHHHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHhhhccCchhHHH
Q 009978          180 LTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFV  259 (521)
Q Consensus       180 l~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gw~~~f~  259 (521)
                      .....  ++++.++++|+++|++.+...|+..+++.+++++++|++++|+.+++.++|.++||++++++....+|++.|+
T Consensus       101 ~~~~~--~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~  178 (1140)
T PRK06814        101 YGFHL--NSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVA  178 (1140)
T ss_pred             HHHHH--hhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHH
Confidence            33344  7899999999999999999999999999999999999999999999999999999999999999999999995


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHHhhccccccCCCCCCCCCCchHHHHHhcchHHHHHHHHHHHHHH
Q 009978          260 IFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWG  339 (521)
Q Consensus       260 ~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  339 (521)
                      ..++..++.+++. +..++.+......+...                 .........++.+.++|.++...+..++.++.
T Consensus       179 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (1140)
T PRK06814        179 LLMGIAVLGWLAS-LFIPKTGNAAPDLKIDR-----------------NIIRSTITLLKYAKADKRIWLAILGISWFWLV  240 (1140)
T ss_pred             HHHHHHHHHHHHH-hhCCCCCCCCCCCeecc-----------------chHHHHHHHHHHHhcCchHHHHHHHHHHHHHH
Confidence            5544444444333 33444332211100000                 00001123567888999999998888888888


Q ss_pred             HHHHHHHHHHHHHHHhCCCcccchhHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHH---
Q 009978          340 FFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGL---  416 (521)
Q Consensus       340 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  416 (521)
                      ...+..++|.|+++.+|.++...+++.+...++.+++.++.+++.++..+++..       .............+.+   
T Consensus       241 ~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~-------~~~~~~~~~~~~~l~~~~~  313 (1140)
T PRK06814        241 GAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYV-------PIGALLMGLFGLDLAFASS  313 (1140)
T ss_pred             HHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeee-------hHHHHHHHHHHHHHHhccc
Confidence            888889999999998999999999999999999999999999998876555211       1111111111111111   


Q ss_pred             ---------------hccchhHHHHHHHHHHHHHHhhhhhhhHHHHHhhhc-cchhhHHhHHHHHHHHHHHHHHHHHHHH
Q 009978          417 ---------------TAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFF  480 (521)
Q Consensus       417 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l  480 (521)
                                     ....+.+...+..++.+.+.+...+...+..++..| +.+|+++|+.+++..++..+++.+.|.+
T Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l  393 (1140)
T PRK06814        314 SVPAEPAQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALL  393 (1140)
T ss_pred             ccccccccccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHH
Confidence                           011233333333333333333444445555555555 6999999999999999999999999999


Q ss_pred             hhcccchHHHHHHHHHHHHHH
Q 009978          481 VELVGSFQGFLLLTSLLYFLS  501 (521)
Q Consensus       481 ~~~~g~~~~~~~~~~~~~~~~  501 (521)
                      .+...++...+++.+++.++.
T Consensus       394 ~~~~~~~~~~~~~~~~~~~~~  414 (1140)
T PRK06814        394 QALGFSIPWIILFIALANLIV  414 (1140)
T ss_pred             HHhccCHHHHHHHHHHHHHHH
Confidence            865444666666555543333

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.97  E-value=2.1e-26  Score=230.35  Aligned_cols=404  Identities=13%  Similarity=0.096  Sum_probs=268.7

Q ss_pred             HHHHHHHHHHHhhhhhhhhhhhhhhh-hh--hcCCcchhhHHHHHHHHHHHHhhhhhHHHHhH-hcchHHHHHHHHHHHH
Q 009978          101 VSMLALALALCNADRVVMSVAIVPLS-LA--HGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDY-YGGKIIMAWGVALWSL  176 (521)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr-~Grr~~~~~~~~~~~~  176 (521)
                      +..+.+..+...+..+...+.+|.+. ++  +|++..+.|++.+.+.++..++++++|+++|| +|||+++.++.++.++
T Consensus        12 ~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~   91 (475)
T TIGR00924        12 LFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLML   91 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHH
Confidence            34444556666666666666666664 44  89999999999999999999999999999999 8999999999999999


Q ss_pred             HHhhhhhccccchHHHHHHHHHHhhhhcchhhHHHHHHHhcCCchh---hHHHHHHHHhhhhhhhHHHHHHHHHhhhccC
Q 009978          177 ATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTE---RARAVAIAMGGFTSGNAIGLVLSPILMSQAG  253 (521)
Q Consensus       177 ~~~l~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~---r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g  253 (521)
                      +.++++++  ++++.++++|++.|+|.|...+...++++|++|+++   |+++++++..+.++|.++||++++++.+.+|
T Consensus        92 g~~~~~~~--~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g  169 (475)
T TIGR00924        92 GHFMLAMS--IYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYG  169 (475)
T ss_pred             HHHHHHhc--ccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            99998888  788889999999999999999999999999998754   8889999999999999999999999999999


Q ss_pred             chhHHHHHHHHHHHHHHHHHHhcCC---CCCCCCCCchhHHHHHHHhh----------ccccccCCCCC-----------
Q 009978          254 IFGPFVIFGLSGFLWVLVWLSATSS---TPDRHPQISKYELEYILREK----------QKPLLMGNKHK-----------  309 (521)
Q Consensus       254 w~~~f~~~~~~~~i~~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~-----------  309 (521)
                      |++.|.+.++..++..+......+.   .+++++..++++.+......          .......+...           
T Consensus       170 ~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (475)
T TIGR00924       170 YHVGFNLAAVGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYGKLLLALLAALALVFFCAWLMHHVVIANILLMTVTLA  249 (475)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHcccccccCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            9999999886555544333332221   11111111111111000000          00000000000           


Q ss_pred             --------CCCCCchHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccc----chhHhHHHHHHHHHHH
Q 009978          310 --------PATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQ----ASWFSAVPWSVMAFTG  377 (521)
Q Consensus       310 --------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----~~~~~~~~~~~~~i~~  377 (521)
                              ..++.....+..|...+..+.+...+.+..+....+.++.+.++..+.+...    .+++.++..+..++..
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~  329 (475)
T TIGR00924       250 VIIFFFRLAFKPRLDAVARNKMYAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGS  329 (475)
T ss_pred             HHHHHHHHHHhccCCHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHH
Confidence                    0000000011112223455556666666777777777888877754443222    5677788888888887


Q ss_pred             HHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHhc---------cchhHHHHHHHHHHHHHHhhhhhhhHHHHH
Q 009978          378 YLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTA---------AKSPVMASAWLTLAIGMKSFSHSGFLVNLQ  448 (521)
Q Consensus       378 ~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  448 (521)
                      ++..++..|+.+|+.......+.  .++.++.+++...+..         ..+.++.+...++.........+.......
T Consensus       330 p~~~~~~~~l~~~~~~~~~~~k~--~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~  407 (475)
T TIGR00924       330 PVLAMIWTRLGRKGKDPTTPLKF--TLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTLGELMISPLGLSWWT  407 (475)
T ss_pred             HHHHHHHHHHHhCCCCCCcHHHH--HHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            77777777777753322222222  3344444333333321         234444444544444455556666666666


Q ss_pred             hhhc-cchhhHHhHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHhc
Q 009978          449 EIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYIIFS  509 (521)
Q Consensus       449 ~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  509 (521)
                      +..| +.||+.+|++.....+|..+++.+.+...+..| +...|...++..++..++.++..
T Consensus       408 ~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  468 (475)
T TIGR00924       408 KIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQG-VTGVFGKIGLVTLLVGVVMALMV  468 (475)
T ss_pred             HhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-hhhHHHHHHHHHHHHHHHHHHHH
Confidence            6666 589999999999999999999999888777655 77777777776666655554443

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.96  E-value=3.8e-27  Score=263.42  Aligned_cols=356  Identities=18%  Similarity=0.135  Sum_probs=247.1

Q ss_pred             hhhhhhhhhhhhhcCCc--chhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHHHHHHHhhh---hhccccchHH
Q 009978          117 VMSVAIVPLSLAHGWSR--SFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLT---PWAADTSLLA  191 (521)
Q Consensus       117 ~~~~~~~~~~~~~~~s~--~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~l~---~~~~~~~~~~  191 (521)
                      ....+.+.+..+++.+.  ...+++.+++.++..++++++|+++||+|||++++++.++.+++.++.   ...  ++++.
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~--~~~~~  105 (1146)
T PRK08633         28 HKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYL--GWFWL  105 (1146)
T ss_pred             HHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHH--ccHHH
Confidence            44455556666666654  447899999999999999999999999999999999887666555443   334  67999


Q ss_pred             HHHHHHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHhhhc--------c-CchhHHHHHH
Q 009978          192 LLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQ--------A-GIFGPFVIFG  262 (521)
Q Consensus       192 l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~--------~-gw~~~f~~~~  262 (521)
                      +++.|+++|++.+...++..+++.|++|+++|++++++.+.+.++|.++|+++++++.+.        + +|++.+.+..
T Consensus       106 l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~  185 (1146)
T PRK08633        106 AFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVL  185 (1146)
T ss_pred             HHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999876        2 3444444444


Q ss_pred             HHHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHHhhccccccCCCCCCCCCCchHHHHHhcchHHHHHHHHHHHHHHHHH
Q 009978          263 LSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFV  342 (521)
Q Consensus       263 ~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  342 (521)
                      +...+..++..+..|+.++......+.               ............++.++++|.++...+..++.......
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  250 (1146)
T PRK08633        186 LAVAVLGLIFAYRLPKVPAAAPEVFDK---------------KKYLFPKLLWRNLKLLRSDRVLWLAIIGLSYFWFISQL  250 (1146)
T ss_pred             HHHHHHHHHHHhcCcCCCCCCcccccc---------------cccccHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence            333333333333445544332211000               00000011223566788889888888877777777777


Q ss_pred             HHHHHHHHHHHHhCCCcc-cchhHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHhccch
Q 009978          343 ILSWMPIYFNFVYHIDLR-QASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKS  421 (521)
Q Consensus       343 ~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  421 (521)
                      +..++|.|+.+.+|++.. ..+++.+...++.+++.++.+++.||+++++.         +.++.++.++.++.+....+
T Consensus       251 ~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~---------~~~~~~~~~~~~~~~~~~~~  321 (1146)
T PRK08633        251 AQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGL---------VPLGALGLALSLFLLPTAPS  321 (1146)
T ss_pred             HHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccc---------hhHHHHHHHHHHHHHHHhhh
Confidence            888999999998999998 89999999999999999999999999887632         22233333333333333334


Q ss_pred             hHHHHHHHHHHHHHHhhhhhhhHHHHHhhhc-cchhhHHhHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHH
Q 009978          422 PVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLY  498 (521)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~  498 (521)
                      .+..++..++.+...+...+....+..+..| +.+|+++|+.+++..++.++++.+.+.+.....++...+++.+.+.
T Consensus       322 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  399 (1146)
T PRK08633        322 LASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALVT  399 (1146)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence            4433333333333333444445555555555 6899999999999999998888777766542112344454444433

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.96  E-value=4.2e-26  Score=224.34  Aligned_cols=369  Identities=13%  Similarity=0.065  Sum_probs=260.4

Q ss_pred             HHHHHHHHHHHhhhhhhhhhhhhhhhhhhcCCcchhhHH--HHHHHHHHHHhhhhhH-HHHhHhcchHHHHHHHHHH-HH
Q 009978          101 VSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIV--QSSFLWGYLVSPIAGG-TLVDYYGGKIIMAWGVALW-SL  176 (521)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~--~s~~~~~~~i~~~~~G-~l~dr~Grr~~~~~~~~~~-~~  176 (521)
                      +..+...++..+.......+.+|.+.++.|.|.+++|++  .++..+...+.+++++ +..||+||||..++...+. .+
T Consensus         3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~   82 (390)
T TIGR02718         3 VITLGLLYLSQGIPIGLAMDALPTLLREDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSA   82 (390)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHH
Confidence            455667788888888899999999999999999999997  3566788878888884 4789999999865554332 21


Q ss_pred             HHhhhh-hccccc-hHHHHHHHHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHhhhccCc
Q 009978          177 ATFLTP-WAADTS-LLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGI  254 (521)
Q Consensus       177 ~~~l~~-~~~~~~-~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gw  254 (521)
                      .....+ +....+ ..+++...++.++..+...+...++..|..++++++...+....+..+|.++|+.+.+++.+.+||
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw  162 (390)
T TIGR02718        83 CLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQ  162 (390)
T ss_pred             HHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCH
Confidence            122222 211122 334445556666777788889999999999888889999999999899999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHHhhccccccCCCCCCCCCCchHHHHHhcchHHHHHHHHH
Q 009978          255 FGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANA  334 (521)
Q Consensus       255 ~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  334 (521)
                      |..|++.+++.++..+..++..|+++++++.                        ++....++++.+|+|.++...+..+
T Consensus       163 ~~~f~~~a~l~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~l~~~~~~~~~~~~~  218 (390)
T TIGR02718       163 RPAFLLVACVPLASLVCVLWLKDRAVASPEA------------------------PLARRASLFRFFRRPLAWSLLALAL  218 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCCcCcccc------------------------chhhHHHHHHHHcCcCHHHHHHHHH
Confidence            9999999988877666555544433211100                        0011235678899999888888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCcccchhHhHHHHH-HHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHH-HHH
Q 009978          335 MHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWS-VMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAP-GIA  412 (521)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~-~~~  412 (521)
                      +..........+.+.|++| .|+++++.+......++ ...++.++.|++.||+++++       ....  +.... ...
T Consensus       219 l~~~~~~~~~~~~~~~l~~-~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~-------~l~~--~~~~~~~~~  288 (390)
T TIGR02718       219 LSAMTAVSGFGLSKLYLVD-AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWR-------TFIL--GVGLAGSLA  288 (390)
T ss_pred             HHHHHHHHHHHHhhHHHHh-cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHH-------HHHH--HHHHHHHHH
Confidence            8888788888899999998 79999999998887764 55677899999999999882       2222  22211 111


Q ss_pred             HHHH--hc---cchhHHHHHHHHHHHHHHhhhhhhhHHH-HHhhhc-cchhhHHhHHHHHHHHHHHHHHHHHHHHhhccc
Q 009978          413 LIGL--TA---AKSPVMASAWLTLAIGMKSFSHSGFLVN-LQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVG  485 (521)
Q Consensus       413 ~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g  485 (521)
                      +..+  ..   ............+.....+...+..... .....+ +.+|+.+++.+...++|..++|.+.|.+.|..|
T Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G  368 (390)
T TIGR02718       289 LLWFAQAAFWLAPGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFG  368 (390)
T ss_pred             HHHHHHHHcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            1111  11   1122222222222222334444444444 344455 688999999999999999999999999999987


Q ss_pred             chHHHHHHHHHHHHHHHHH
Q 009978          486 SFQGFLLLTSLLYFLSALF  504 (521)
Q Consensus       486 ~~~~~~~~~~~~~~~~~~~  504 (521)
                       +...|...+++.+++.++
T Consensus       369 -~~~~f~~~~~~~l~a~~~  386 (390)
T TIGR02718       369 -YAGGFLSGTVLAVLAILL  386 (390)
T ss_pred             -cHHHHHHHHHHHHHHHHH
Confidence             888888887776665543

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.96  E-value=1.4e-28  Score=252.59  Aligned_cols=289  Identities=17%  Similarity=0.189  Sum_probs=225.0

Q ss_pred             HHHHHHHHHHhhhhhhhhhhhhhhhhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHHHHHHHhhh
Q 009978          102 SMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLT  181 (521)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~l~  181 (521)
                      +.+++..+............++.+.++|+++..+.|++.+.+.++++++.++.|++.||+||||++.++.++++++.+++
T Consensus        36 ~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~  115 (633)
T TIGR00805        36 LLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLL  115 (633)
T ss_pred             HHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHH
Confidence            44445666677777888999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             hhcc-------------------------------------------------ccchHHHHHHHHHHhhhhcchhhHHHH
Q 009978          182 PWAA-------------------------------------------------DTSLLALLAMRAVVGLAEGVALPAMNN  212 (521)
Q Consensus       182 ~~~~-------------------------------------------------~~~~~~l~~~r~l~G~g~~~~~~~~~~  212 (521)
                      ++..                                                 ...+..++++|+++|+|.+...+...+
T Consensus       116 alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~  195 (633)
T TIGR00805       116 SLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGIS  195 (633)
T ss_pred             hChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCch
Confidence            7651                                                 002456789999999999999999999


Q ss_pred             HHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHhhhcc----------------------CchhHHHHHHHHHHHHHH
Q 009978          213 MVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQA----------------------GIFGPFVIFGLSGFLWVL  270 (521)
Q Consensus       213 ~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~----------------------gw~~~f~~~~~~~~i~~i  270 (521)
                      ++.|++|+++|+++++++..+..+|.++|+++++++.+.+                      +|+..|++.+++.++..+
T Consensus       196 ~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v  275 (633)
T TIGR00805       196 YIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSI  275 (633)
T ss_pred             hhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999987643                      277778888888777666


Q ss_pred             HHHHhcCCCCCCCCCCchhHHH-HHHHhhccccccCCCCCCCCCCchHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 009978          271 VWLSATSSTPDRHPQISKYELE-YILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPI  349 (521)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  349 (521)
                      ..+++.++.|+...+.+.++.+ ...++..+..........++....++.+++||.++...+..++.....+++..|+|.
T Consensus       276 ~l~~~p~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~n~~f~~~~l~~~~~~~~~~~~~~~lP~  355 (633)
T TIGR00805       276 PFFFFPKALPKEGKRVNVDVHETEKLEKSEDKSRKKNSDITKDFPKIIKRLLCNPIYMLVILAQVIDSLAFNGYITFLPK  355 (633)
T ss_pred             HHHhCccccCCcccccchhhhhhhcccccccccchhhhhhHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555444444322111100000 000000000000000001112345678999999999999999999999999999999


Q ss_pred             HHHHHhCCCcccchhHhHHHHH-HHHHHHHHHHHHHHHHHhc
Q 009978          350 YFNFVYHIDLRQASWFSAVPWS-VMAFTGYLGGLLSDMLIQR  390 (521)
Q Consensus       350 ~~~~~~g~~~~~~~~~~~~~~~-~~~i~~~~~g~l~dr~~~~  390 (521)
                      |+++.+|+++.+++++.....+ +.+++.+++|++.||++.+
T Consensus       356 yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~  397 (633)
T TIGR00805       356 YLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLN  397 (633)
T ss_pred             HHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeeccc
Confidence            9999999999999999887776 5678999999999999855

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>TIGR00901 2A0125 AmpG-related permease

Probab=99.96  E-value=2.9e-27  Score=229.76  Aligned_cols=320  Identities=13%  Similarity=0.092  Sum_probs=230.2

Q ss_pred             hhhhhhhhhhhhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHh-----cchHH-HHHHHHHHHHHHhhhhhcc-ccc
Q 009978          116 VVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYY-----GGKII-MAWGVALWSLATFLTPWAA-DTS  188 (521)
Q Consensus       116 ~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~-----Grr~~-~~~~~~~~~~~~~l~~~~~-~~~  188 (521)
                      ...++..|.+.+|+|+|.+++|+..+. .+...+ .+++|+++||+     ||||. ++.+.++.++...+.++.. ..+
T Consensus         5 ~~~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~   82 (356)
T TIGR00901         5 GLVGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTD   82 (356)
T ss_pred             hhHHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchh
Confidence            456778899999999999999999765 555555 99999999998     89886 5667777777766665552 135


Q ss_pred             hHHHHHHHHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHhhhccC--------chhHHHH
Q 009978          189 LLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAG--------IFGPFVI  260 (521)
Q Consensus       189 ~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g--------w~~~f~~  260 (521)
                      ++.+....++.+++.+...++..+++.|++|+|+|+++.++...+.++|.++++.+++.+.+..+        ||..|++
T Consensus        83 l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i  162 (356)
T TIGR00901        83 LPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFW  162 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHH
Confidence            66677778888888888899999999999999999999999999999999999999999988888        9999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHHhhccccccCCCCCCCCCCchHHHHHhcch---HHHHHHHHHHHH
Q 009978          261 FGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMP---TWSIIVANAMHS  337 (521)
Q Consensus       261 ~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~  337 (521)
                      .++..++..+..++..||+++.++. ++++.                   ++..+.+++++++|.   ++...+..++..
T Consensus       163 ~ai~~l~~~~~~~~~~~e~~~~~~~-~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (356)
T TIGR00901       163 TALLILPGLLVTLFLAKEPQEDASV-PKPLT-------------------QAVLKPIREFFQRKNMIQALLLLLLIVLYK  222 (356)
T ss_pred             HHHHHHHHHHHHHHhccCCCccccc-chhHH-------------------HHHHHHHHHHHHhcCchHHHHHHHHHHHHH
Confidence            9987777555555445553322111 00000                   001234567777775   777777777777


Q ss_pred             HHHHHHHHHHHHHHHHHhCCCcccchhHhHHHH-HHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHH
Q 009978          338 WGFFVILSWMPIYFNFVYHIDLRQASWFSAVPW-SVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGL  416 (521)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  416 (521)
                      ........+.|.|+++ +|+++.+.+.+....+ ++.+++.++++++.||+++|+       ...  .+.++.++....+
T Consensus       223 ~~~~~~~~~~~~~l~~-~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~-------~l~--~~~~~~~~~~~~~  292 (356)
T TIGR00901       223 LGDSAATVLTTLFLLD-MGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILY-------ALL--LFGIVQALTNAGF  292 (356)
T ss_pred             HHHHHHHHHHHHHHHH-cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHH-------HHH--HHHHHHHHHHHHH
Confidence            8888888999999998 8999999988877666 567889999999999999872       222  2222222222211


Q ss_pred             hc---c--------chhHHHHHHHHHHHHHHhhhhhhhHHHHHhhhc-cchhhHHhHHHHHHH
Q 009978          417 TA---A--------KSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGT  467 (521)
Q Consensus       417 ~~---~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~  467 (521)
                      ..   .        +..+......++.....+...+....+..+..| +++|+.+|+.++..+
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~  355 (356)
T TIGR00901       293 VWLASNGHHDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA  355 (356)
T ss_pred             HHHHhcCcccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence            11   1        222333333334344445556666666666665 699999999887654

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.96  E-value=1.2e-25  Score=224.76  Aligned_cols=399  Identities=13%  Similarity=0.116  Sum_probs=250.3

Q ss_pred             HHHHHHHHHHHHhhhhhhhh-hhhhhhhhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhH-hcchHHHHHHHHHHHHH
Q 009978          100 VVSMLALALALCNADRVVMS-VAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDY-YGGKIIMAWGVALWSLA  177 (521)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr-~Grr~~~~~~~~~~~~~  177 (521)
                      .+..+++..+...+..+... ....++.+++|.+..+.+++.+.+.....+..+++|+++|| +||||+++++.+++.++
T Consensus        15 ~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g   94 (489)
T PRK10207         15 PFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIG   94 (489)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHH
Confidence            34444555555555555444 44556678899999999999999998888999999999999 99999999999999999


Q ss_pred             HhhhhhccccchHH-HHHHHHHHhhhhcchhhHHHHHHHhcCCch--hhHHHHHHHHhhhhhhhHHHHHHHHHhhhccCc
Q 009978          178 TFLTPWAADTSLLA-LLAMRAVVGLAEGVALPAMNNMVARWFPQT--ERARAVAIAMGGFTSGNAIGLVLSPILMSQAGI  254 (521)
Q Consensus       178 ~~l~~~~~~~~~~~-l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gw  254 (521)
                      .++++++  .+... ++++|+++|+|.|...+...+++.|.+|++  +|+++++++..+.++|..+||.+++++.+++||
T Consensus        95 ~~~~~~~--~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw  172 (489)
T PRK10207         95 YFMTGMS--LLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGY  172 (489)
T ss_pred             HHHHHHh--ccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhCh
Confidence            9999887  55444 558999999999999999999999999876  457899999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHhcCCCCCC---CCCCchhHH-HHH------------HHhhccc-cccC------------
Q 009978          255 FGPFVIFGLSGFLWVLVWLSATSSTPDR---HPQISKYEL-EYI------------LREKQKP-LLMG------------  305 (521)
Q Consensus       255 ~~~f~~~~~~~~i~~i~~~~~~~~~~~~---~~~~~~~~~-~~~------------~~~~~~~-~~~~------------  305 (521)
                      |+.|++.++..++..+..... ++..++   ++..++.+. ...            ....... ....            
T Consensus       173 ~~~F~i~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  251 (489)
T PRK10207        173 SVTYNLCGAGLIIALLVYFAC-RGMVKDIGSEPDHKPMSFSKLLLVLLGSVVMIFVCAWLMHNVEVANLVLIVLSIVVTI  251 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHHHc-chhhcccCCCCCccchhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence            999999765433333332222 211111   010000000 000            0000000 0000            


Q ss_pred             ---CCCCCCCCCchHHHHHhcchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhCCCcc----cchhHhHHHHHHHHHH
Q 009978          306 ---NKHKPATVIPPFRRLLSKMPTWSIIVA--NAMHSWGFFVILSWMPIYFNFVYHIDLR----QASWFSAVPWSVMAFT  376 (521)
Q Consensus       306 ---~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~----~~~~~~~~~~~~~~i~  376 (521)
                         .++.+.      .+.+|+|.+....+.  ..+.+..+......++.+.++..+.+..    ....+.+...+..++.
T Consensus       252 ~f~~~~~~~------~~~~r~r~~~~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~  325 (489)
T PRK10207        252 IFFREAFKL------DKTGRNKMFVAFVLMLEAVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVA  325 (489)
T ss_pred             HHHHHHhcC------CHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHH
Confidence               000000      145556654443322  4444455555557777777753332111    1233444455666677


Q ss_pred             HHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHH-----HHhcc---chhH-HHHHHHHHHHHHHhhhhhhhHHHH
Q 009978          377 GYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALI-----GLTAA---KSPV-MASAWLTLAIGMKSFSHSGFLVNL  447 (521)
Q Consensus       377 ~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  447 (521)
                      .++.+++.||+++|+.......+......+...+...+     .....   .+.+ .....++.+.+.....++......
T Consensus       326 ~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~  405 (489)
T PRK10207        326 SPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSLGELFISALGLAMIA  405 (489)
T ss_pred             HHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            88889999999998654444434333222222222111     11111   1233 333334445555444445555555


Q ss_pred             HhhhccchhhHHhHHHHHHHHHHHHHHHHHHHHhh---------cccchHHHHHHHHHHHHHHHHHHHH
Q 009978          448 QEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVE---------LVGSFQGFLLLTSLLYFLSALFYII  507 (521)
Q Consensus       448 ~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~---------~~g~~~~~~~~~~~~~~~~~~~~~~  507 (521)
                      ...+++.+|.++|+.+....+|+.++..+.+....         ..+.+...|...++..+++.++++.
T Consensus       406 ~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v~~~~  474 (489)
T PRK10207        406 ALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAVVMAL  474 (489)
T ss_pred             HhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            66666799999999999999999999888865531         1112566777766666655555444

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.96  E-value=8.1e-27  Score=233.39  Aligned_cols=336  Identities=16%  Similarity=0.123  Sum_probs=238.2

Q ss_pred             hhhhhhhhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhH----hcchH-HHHHHHHHHHHHHhhhhhcccc----chH
Q 009978          120 VAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDY----YGGKI-IMAWGVALWSLATFLTPWAADT----SLL  190 (521)
Q Consensus       120 ~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr----~Grr~-~~~~~~~~~~~~~~l~~~~~~~----~~~  190 (521)
                      ...+.+.+++|+++.++|++.++..+..++..|+.|+++||    +|||| .++++....+++.+++...+..    ...
T Consensus        21 ~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~  100 (437)
T TIGR00792        21 YLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLV  100 (437)
T ss_pred             HHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHH
Confidence            34566777899999999999999999999999999999998    67744 6777888888887777665211    145


Q ss_pred             HHHHHHHHHhhhhcchhhHHHHHHHhcC-CchhhHHHHHHHHhhhhhhhHHHHHHHHHhhh-------ccCchhHHHHHH
Q 009978          191 ALLAMRAVVGLAEGVALPAMNNMVARWF-PQTERARAVAIAMGGFTSGNAIGLVLSPILMS-------QAGIFGPFVIFG  262 (521)
Q Consensus       191 ~l~~~r~l~G~g~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~-------~~gw~~~f~~~~  262 (521)
                      .+++.+++.+++.+...+...++..|.. ++++|++..++.+.+..+|..+++.+.+.+..       ..+||+.+.+.+
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~  180 (437)
T TIGR00792       101 YAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLA  180 (437)
T ss_pred             HHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHH
Confidence            6777888889988887888888999987 56899999999999999988887776655542       458999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHHhhccccccCCCCCCCCCCchHHHHHhcchHHHHHHHHHHHHHHHHH
Q 009978          263 LSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFV  342 (521)
Q Consensus       263 ~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  342 (521)
                      ++.++..++.++..+|++++.+                    .+++++.+..+.++.++++|.++...+..++.......
T Consensus       181 ~l~~~~~~~~~~~~~e~~~~~~--------------------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  240 (437)
T TIGR00792       181 LIGVVSLIICFFGTKERYSEIP--------------------KNIEKKLSLKQIFKALFKNDQLLILCLAYLFYNLAFNI  240 (437)
T ss_pred             HHHHHHHHHHHcCCEecCCCCC--------------------cccccCCCHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence            8887776666665555442211                    00011122345677888999999888888887777776


Q ss_pred             HHHHHHHHHHHHhCCCcccchhHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHhcc-ch
Q 009978          343 ILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAA-KS  421 (521)
Q Consensus       343 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  421 (521)
                      ...+.+.|.++..+ ++...+.+.....++.+++.++.+++.||+++|+         ....+..+..+....+... ++
T Consensus       241 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~---------~~~~~~~~~~~~~~~~~~~~~~  310 (437)
T TIGR00792       241 KNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKI---------LFAGGILLMVLGYLIFFFAGSN  310 (437)
T ss_pred             HcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHH---------HHHHHHHHHHHHHHHHHHcchh
Confidence            66666666665455 4556667777778889999999999999999872         2223333333322222222 23


Q ss_pred             hHHHHHHHHHHHHHHhhhhhhhHHHHHhhh--------ccchhhHHhHHHHHHHHHHHHHHHHHHHHhhccc
Q 009978          422 PVMASAWLTLAIGMKSFSHSGFLVNLQEIA--------PQYSGVLHGISNTAGTFAAILGTVGAGFFVELVG  485 (521)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g  485 (521)
                      .+...+..++.....+...+...+...+..        ++.+|.++|+.+....+|..+++.+.|.+.+..|
T Consensus       311 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G  382 (437)
T TIGR00792       311 LPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIG  382 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            333333333333333333444555555543        2467999999999999999999999999998766

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.96  E-value=4e-26  Score=216.69  Aligned_cols=380  Identities=11%  Similarity=0.066  Sum_probs=264.6

Q ss_pred             hhhhhhhhhhhhhhhhhcCCcch-hhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHHHHHHHhhhhhccccchHH
Q 009978          113 ADRVVMSVAIVPLSLAHGWSRSF-SGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLA  191 (521)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~s~~~-~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~l~~~~~~~~~~~  191 (521)
                      -.+...+.+.|.+.+++|+|+.+ .|.+.+++..+++++.++.|+++||+|.|+++.++.+.+++..++.+++  +++..
T Consensus        40 e~R~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa--~Sl~~  117 (511)
T TIGR00806        40 QFRPGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLG--TSVWH  117 (511)
T ss_pred             HhhchHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH--HHHHH
Confidence            34678888999999999999999 9999999999999999999999999999999999999999999999998  99999


Q ss_pred             HHHHHHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHhhhccCchhHHHHHHH--HHHHHH
Q 009978          192 LLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGL--SGFLWV  269 (521)
Q Consensus       192 l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gw~~~f~~~~~--~~~i~~  269 (521)
                      +.+.|++.|++.|... +...++..|+|+++|+++.++...+..+|.+++++++++ +..+|||+.+.+.-+  .+.+..
T Consensus       118 L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~gWr~y~~Ln~Isl~s~~~a  195 (511)
T TIGR00806       118 MQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLGWISYSTLNIISLVFMTFS  195 (511)
T ss_pred             HHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCchhHHHHHHHHHHHHHHH
Confidence            9999999999999988 999999999999999999999999999999999999999 556899986544322  222233


Q ss_pred             HHHHHhcCCCCCCCCCCchhHHH-HHHHhhccccccCC--CC--CC-------CCCCchHHHHHhcchHHHHHHHHHHHH
Q 009978          270 LVWLSATSSTPDRHPQISKYELE-YILREKQKPLLMGN--KH--KP-------ATVIPPFRRLLSKMPTWSIIVANAMHS  337 (521)
Q Consensus       270 i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~--~~-------~~~~~~~~~~~~~~~~~~~~l~~~~~~  337 (521)
                      +++.++.|..++..-..++++.+ ....+.+.......  ..  .+       ......++...+||.++...+-..+..
T Consensus       196 ~~~a~~LP~~~~sl~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~n~~vl~WSlWwa~a~  275 (511)
T TIGR00806       196 VFLALFLKRPKRSLFFNRLEDVRGALPCELDQMVPGPGGKLEDYLGTCRDSFLVRMLSELVTIYRNPQLLLWSLWWVFNS  275 (511)
T ss_pred             HHHHHhCCCCchhhhhccccccccccccccccCCCCCccccchhhhhhhhHHHHHHHHHHHHHhcCcchhhhhHHHHHHh
Confidence            33334445333211000000000 00000000000000  00  00       011234556678899988888888888


Q ss_pred             HHHHHHHHHHHHHHHHHhCCCcccchhHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHh
Q 009978          338 WGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLT  417 (521)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (521)
                      .+++.+.+|......+..+-++..-|..-++..+.++++.+..|++-.++.+.       ..+.+.+..++.+..++.+.
T Consensus       276 ~g~~qv~~Y~Q~LW~~v~~~~~~yNG~veA~~tllga~~a~~ag~~~~~w~~~-------~~l~l~v~s~~~~gll~~m~  348 (511)
T TIGR00806       276 AGYYLITYYVHTLWGTLDESLNKYNGAVDAASTLLGAITSFIAGFVNIRWARW-------SKLLIAVVSAIQAGLVFWMS  348 (511)
T ss_pred             hHHHHHHHHHHHHHHHcCCCccccCCHHHHHHHHHHHHHHHHHHhhcCCchhh-------HHHHHHHHHHHHHHHhhhhh
Confidence            89998988888888775342233567777777788888888888885554333       22455566666666777778


Q ss_pred             ccchhHHHHHHHHHHHHHHhhhhhhhHHH-HHhhhccchhhHHhHHHHHHHHHHHHHHHHH----HH---HhhcccchHH
Q 009978          418 AAKSPVMASAWLTLAIGMKSFSHSGFLVN-LQEIAPQYSGVLHGISNTAGTFAAILGTVGA----GF---FVELVGSFQG  489 (521)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~----g~---l~~~~g~~~~  489 (521)
                      ..++.|...+..++......+..+....- ...+..+..|-++|+.+++.-+-..+-..+.    |.   +.+.+--|..
T Consensus       349 ~t~~Iw~~Y~~yvlf~~~y~flitia~~~iA~~L~~~~~aLvFGiNtfvAl~LQtilT~iVvd~~gl~l~i~~Qf~vY~~  428 (511)
T TIGR00806       349 QSHDIWVLYVTYVLFRGIYQFLVPIATFQIASSLSKELCALVFGINTFVATALKTIITAVVSDKRGLGLQVRKQFRIYSV  428 (511)
T ss_pred             cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccceEEEEecHHHHHHHHHHheEEEEEcccccCCCceeEEEehhh
Confidence            88888888777777666665555544333 3344445679999998877766655544432    22   1111113555


Q ss_pred             HHHHHHHHHHHHHH
Q 009978          490 FLLLTSLLYFLSAL  503 (521)
Q Consensus       490 ~~~~~~~~~~~~~~  503 (521)
                      .|...+++.++..+
T Consensus       429 yf~~~~~i~~~~~~  442 (511)
T TIGR00806       429 YFLVLSIICFFGAG  442 (511)
T ss_pred             HHHHHHHHHHHHHH
Confidence            66666655555544

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=99.96  E-value=2.2e-26  Score=206.32  Aligned_cols=401  Identities=15%  Similarity=0.104  Sum_probs=283.4

Q ss_pred             ccchhHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHH
Q 009978           93 ITSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVA  172 (521)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~  172 (521)
                      ..+.+|..............+.....+.+.|...+.+|.+..+..++......+..+++..+|..+|++|||+.+.+..+
T Consensus        72 fgrfq~yl~~~ag~gwmad~m~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l  151 (528)
T KOG0253|consen   72 FGRFQWYLFFVAGMGWMADAMEMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFL  151 (528)
T ss_pred             cccchhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHH
Confidence            35667888888888888888877788888899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhhccccchHHHHHHHHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHhhhcc
Q 009978          173 LWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQA  252 (521)
Q Consensus       173 ~~~~~~~l~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~  252 (521)
                      ..++...+.+.+  +|+..+++.|.+.|+|.|+ .|...++-.|..|..+|..-+-.. ..+.+|.+....++-.+..++
T Consensus       152 ~t~v~~~is~~s--pnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~  227 (528)
T KOG0253|consen  152 VTGVFGVISGAS--PNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNF  227 (528)
T ss_pred             HHHHHHHhhcCC--CCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhh
Confidence            999999999999  9999999999999999999 899999999999999988776666 899999999999999999999


Q ss_pred             CchhHHHHHHHHHHHHHHHHHHhcCCCCCCCC-CCchhHHH----HHHHhhccc----------c----------ccCCC
Q 009978          253 GIFGPFVIFGLSGFLWVLVWLSATSSTPDRHP-QISKYELE----YILREKQKP----------L----------LMGNK  307 (521)
Q Consensus       253 gw~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~-~~~~~~~~----~~~~~~~~~----------~----------~~~~~  307 (521)
                      ||||.....+....+.+. ..+..+|+|+-.- ..++++.-    ++.+....+          .          +..+.
T Consensus       228 gwr~~l~~~~~pl~~~a~-f~~w~~ESpRf~~~~G~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e~~~~~~~~~  306 (528)
T KOG0253|consen  228 GWRYLLFTSSTPLMFAAR-FLVWVYESPRFYLAKGDDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQEESDLDDSKS  306 (528)
T ss_pred             hHHHHHHHHHhHHHHHHH-HHhhcccCcchhhhcCChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhhhhchhhhhh
Confidence            999988888865555444 4445677775321 11222111    111111100          0          00000


Q ss_pred             CCCCCCCchHHHHHh---cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--C-----------------CCcccchhH
Q 009978          308 HKPATVIPPFRRLLS---KMPTWSIIVANAMHSWGFFVILSWMPIYFNFVY--H-----------------IDLRQASWF  365 (521)
Q Consensus       308 ~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--g-----------------~~~~~~~~~  365 (521)
                      ...++.......++.   ++..+.++...|...+.+++........++...  +                 .+...--.=
T Consensus       307 ~a~ke~rg~~~nLlsp~lrkttlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrd  386 (528)
T KOG0253|consen  307 SAAKEVRGGTTNLLSPKLRKTTLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRD  386 (528)
T ss_pred             ccccccccchHhhcChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHH
Confidence            111222333334332   123344445555555566655444444443311  0                 010111112


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhhhhhhhHH
Q 009978          366 SAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLV  445 (521)
Q Consensus       366 ~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  445 (521)
                      ..+..+....|.++.++++||+|||         ..++..+++.+++++.+...........+.+.+-.+........+.
T Consensus       387 llitslaefPGlLIt~~iverlGRK---------kTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYv  457 (528)
T KOG0253|consen  387 LLITSLAEFPGLLITGVIVERLGRK---------KTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYV  457 (528)
T ss_pred             HHHHHHhhCCchhHHHHHHHHhcch---------hHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEE
Confidence            3345667788999999999999999         3456666777777776666655555566666667777777888899


Q ss_pred             HHHhhhc-cchhhHHhHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHhcc
Q 009978          446 NLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYIIFST  510 (521)
Q Consensus       446 ~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  510 (521)
                      +..|++| +.|+++.|.+..+..+|+++.|.+. ...+..  ...+..+.+.+++++.+...+++.
T Consensus       458 YtPEVyPTavRatgvGtcSsmaRIggI~~p~iA-~~~e~s--~sl~i~vy~~~~ilagIavcffPi  520 (528)
T KOG0253|consen  458 YTPEVYPTAVRATGVGTCSSMARIGGIFSPVIA-MRAELS--TSLPIFVYGALFILAGIAVCFFPI  520 (528)
T ss_pred             ecCcccchhhhhcchhhhhhHHhhhhhhhhHHH-HHhccc--eeehHHHHHHHHHHHHHHheeeee
Confidence            9999999 5999999999999999999999998 444432  334444445555555555555543

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.96  E-value=8.2e-26  Score=218.11  Aligned_cols=366  Identities=16%  Similarity=0.117  Sum_probs=256.9

Q ss_pred             hhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHHHHHHHhhhhhcc-ccchHHHHHHHHHHhhhhcchhhHHHHHH
Q 009978          136 SGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAA-DTSLLALLAMRAVVGLAEGVALPAMNNMV  214 (521)
Q Consensus       136 ~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~l~~~~~-~~~~~~l~~~r~l~G~g~~~~~~~~~~~i  214 (521)
                      .+.+.+++.+|.++|++..|+++||+|||..+.++.++..++.++..++. .++++.++++|++.|+..|.......-++
T Consensus        62 wS~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl  141 (485)
T KOG0569|consen   62 WSLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYL  141 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            46788899999999999999999999999999999888888777655542 27899999999999999999999999999


Q ss_pred             HhcCCchhhHHHHHHHHhhhhhhhHHHHHHHH--HhhhccCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCC--CCchhH
Q 009978          215 ARWFPQTERARAVAIAMGGFTSGNAIGLVLSP--ILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHP--QISKYE  290 (521)
Q Consensus       215 ~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~--~l~~~~gw~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~--~~~~~~  290 (521)
                      .|..|++.||....+.+.+..+|.++|..++.  .+.+...|++.+....+++++..+.. ...||+|+..-  +.+++|
T Consensus       142 ~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l-~~~PESPk~Ll~~k~~~~~  220 (485)
T KOG0569|consen  142 TEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALL-PFLPESPKYLLIKKGDEEE  220 (485)
T ss_pred             hhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHH-hcCCCCcchHHHHcCCHHH
Confidence            99999999999999999999999999977663  33345569999988888877765544 45688886531  222333


Q ss_pred             HHHHHHhhcccc-----------ccCCCCCCCCCCchHHHHHhcchHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Q 009978          291 LEYILREKQKPL-----------LMGNKHKPATVIPPFRRLLSKMPTWSIIV-----ANAMHSWGFFVILSWMPIYFNFV  354 (521)
Q Consensus       291 ~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-----~~~~~~~~~~~~~~~~~~~~~~~  354 (521)
                      +++..+.-+...           +.++++..+....++++++++|....-..     .......+.+....|...++++ 
T Consensus       221 A~~sl~~y~G~~~~~~~~e~~~~e~~~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~-  299 (485)
T KOG0569|consen  221 ARKALKFYRGKEDVEAEIEEMLREIEEEELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKT-  299 (485)
T ss_pred             HHHHHHHHhCCCcchhHHHHHHHHHHHhccccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHH-
Confidence            332222111110           00111122235567888998876554322     2222333556677777788877 


Q ss_pred             hCCCcccchhHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHhc----cc-h-hHH---H
Q 009978          355 YHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTA----AK-S-PVM---A  425 (521)
Q Consensus       355 ~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~-~~~---~  425 (521)
                      .|++..++.+.....++...+.++++.++.||.|||.         ++..+..++.+..+.+..    .+ . .|.   .
T Consensus       300 aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRp---------Lll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~  370 (485)
T KOG0569|consen  300 AGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRP---------LLLISLSLMAVALLLMSIALFLSNSFGSWLSYLC  370 (485)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcH---------HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence            7999999999999999999999999999999999993         333333333332222211    11 1 122   2


Q ss_pred             HHHHHHHHHHHhhh-hhhhHHHHHhhhc-cchhhHHhHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHH-
Q 009978          426 SAWLTLAIGMKSFS-HSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSA-  502 (521)
Q Consensus       426 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~-  502 (521)
                      ++..++.......+ .|..+.+..|+.| +.|+.+.++...+.++..++-......+.+..|.  ..|+.+.+.+++.. 
T Consensus       371 i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~--~~filF~i~~~~~~i  448 (485)
T KOG0569|consen  371 IAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP--YVFILFVIPLAIFLI  448 (485)
T ss_pred             HHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--hhhHHHHHHHHHHHH
Confidence            23333333333444 4455677788887 5999999999999999999999999999999984  45555555544444 


Q ss_pred             HHHHHhccCccc
Q 009978          503 LFYIIFSTGERV  514 (521)
Q Consensus       503 ~~~~~~~~~~~~  514 (521)
                      .++..++++|.+
T Consensus       449 ~~~~~lPETkgr  460 (485)
T KOG0569|consen  449 YLYRYLPETKGR  460 (485)
T ss_pred             HHHHhCcccCCC
Confidence            444455555544

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.95  E-value=1.7e-26  Score=208.54  Aligned_cols=358  Identities=15%  Similarity=0.086  Sum_probs=236.5

Q ss_pred             hhhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhhhc
Q 009978          125 LSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEG  204 (521)
Q Consensus       125 ~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~r~l~G~g~~  204 (521)
                      ..+..+.+..-.|.+.+.+.+...+.++.+|.++||+|||++++++.+..+++..+.+++  .|+..+++.|++.|+..|
T Consensus        59 ~~~~~~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S--~~F~afv~aR~l~Gi~kg  136 (451)
T KOG2615|consen   59 IGEPDGASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALS--RNFAAFVLARFLGGIFKG  136 (451)
T ss_pred             hCCcccccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhhhhccC
Confidence            333344456677999999999999999999999999999999999999999999999999  999777777999999987


Q ss_pred             chhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHhhh---ccCchhHHHH----HHHHHHHHHHHHHHhcC
Q 009978          205 VALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMS---QAGIFGPFVI----FGLSGFLWVLVWLSATS  277 (521)
Q Consensus       205 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~---~~gw~~~f~~----~~~~~~i~~i~~~~~~~  277 (521)
                      . .....++++|.+++|+|+++++.+...+++|.++||.+|+++..   ..| +++|..    ..+....-.....++.|
T Consensus       137 n-l~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g-~~p~alP~~~v~i~a~~~v~~~~~~lp  214 (451)
T KOG2615|consen  137 N-LSVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISG-SYPFALPCLLVFILAAGDVTFFPWFLP  214 (451)
T ss_pred             c-hHHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhc-cCchHHHHHHHHHHHHHHHHHHHHhCC
Confidence            6 66789999999999999999999999999999999999999987   222 222222    22222221222333445


Q ss_pred             CCCCCCCCCc-hhHHHHHHHhhccccccCCCCCCCCCCchHHHHHhcchHH-------HHHHHHHHHHHHHHHHHHHHHH
Q 009978          278 STPDRHPQIS-KYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTW-------SIIVANAMHSWGFFVILSWMPI  349 (521)
Q Consensus       278 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~l~~~~~~~~~~~~~~~~~~  349 (521)
                      |+-+.+++.+ ..+..+..+...+        ..+.....--..+||+...       .+.+..+++...+..+..+.+.
T Consensus       215 ETL~~rk~~~~~~~~~~~~~~~~~--------~~~~~~~~~v~~lrn~p~~~~i~~~~i~~l~~~ly~~l~s~~~~t~~~  286 (451)
T KOG2615|consen  215 ETLPLRKRNDEHSTLQEAADDRLA--------LLKFARIFKVAALRNPPLLDFISVLRIFGLHYFLYLELFSGLENTVLF  286 (451)
T ss_pred             ccccchhhcccccchhhhhhhhhh--------hcchhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            5432222110 0001110000000        0000000011233443322       2333444444444445555555


Q ss_pred             HHHHHhCCCcccchhHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHhccchhHHHHHHH
Q 009978          350 YFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWL  429 (521)
Q Consensus       350 ~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  429 (521)
                      +..+.+|+++.+.|-+.+..++.+.+.+.......+|.+..       .+..+......+.-.++.+.....+.......
T Consensus       287 l~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~-------~~a~l~~~l~~~vP~~llls~~~~~~~l~~~s  359 (451)
T KOG2615|consen  287 LTHGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGN-------IKAVLLFSLLLIVPAFLLLSLARTPVVLYLGS  359 (451)
T ss_pred             hhcCccCCChhhheeeeehhhHHHHHHHHhccccccccccc-------hhhHHHHHHHHHHHHHHHHhccccchhhhHHH
Confidence            54566899999999999888888877776666666654411       11233344444444455555555555555555


Q ss_pred             HHHHHHHhhhhhhhHHHHHhhhc-cchhhHHhHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHH
Q 009978          430 TLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLS  501 (521)
Q Consensus       430 ~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~  501 (521)
                      .+-.+......+.....+....| ++||+++|+..+.+.++.++||.+.|.+..+.-.-+..+...+.+.+..
T Consensus       360 ~l~sf~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~Ws~~~~~a~~~~~~L~~~~  432 (451)
T KOG2615|consen  360 TLKSFSTASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFSWSQGAQPAYIAWGALLLIP  432 (451)
T ss_pred             HHHHHHHHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEEEecCCCceeeehHHHHHHH
Confidence            55556666666777777777777 5999999999999999999999999999887543445555555555444

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=99.95  E-value=1.4e-25  Score=227.42  Aligned_cols=403  Identities=17%  Similarity=0.115  Sum_probs=263.7

Q ss_pred             HHHHHHHHHHHHhhh--hhhhhhhhhhhhhhh-----cCCc--chhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHH
Q 009978          100 VVSMLALALALCNAD--RVVMSVAIVPLSLAH-----GWSR--SFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWG  170 (521)
Q Consensus       100 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-----~~s~--~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~  170 (521)
                      ......+..+..+.+  ....+.....+.++.     ..+.  .+.+++.+...++..+++++.|+++|++|||+.++++
T Consensus        46 ~~~~~~~~~~~fg~~g~~g~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~  125 (513)
T KOG0254|consen   46 LALVAALGGLLFGYDGDIGGISGALDFLQRFASLYDLSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLA  125 (513)
T ss_pred             HHHHHHHHHHHhCcccccccchhhHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence            333444444444443  345555566655532     1222  3458999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhhccccchHHHHHHHHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHhhh
Q 009978          171 VALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMS  250 (521)
Q Consensus       171 ~~~~~~~~~l~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~  250 (521)
                      .+++.++.++++++  +|+++++++|+++|+|.|........+++|..|++.||...+..+....+|..++..++....+
T Consensus       126 ~~~~~iG~ii~~~a--~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~  203 (513)
T KOG0254|consen  126 VVLFLIGAIIIALA--PSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCINYGTSK  203 (513)
T ss_pred             HHHHHHHHHHHHHh--hhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence            99999999999999  9999999999999999999999999999999999999999999999999999999665555533


Q ss_pred             c-cCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCC-CchhHHHHHHHhhcc--ccccC-----------CCCCCCCCCc
Q 009978          251 Q-AGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQ-ISKYELEYILREKQK--PLLMG-----------NKHKPATVIP  315 (521)
Q Consensus       251 ~-~gw~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~-----------~~~~~~~~~~  315 (521)
                      . ++||..+.+..+.+++..+. .+..||+|+..-+ .+.++.+........  ..+..           .+........
T Consensus       204 ~~~~Wr~~~~~~~i~~~~~~~~-~~~~pesp~~L~~~g~~~~a~~~l~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (513)
T KOG0254|consen  204 VYAGWRIPLGLALIPAVILALG-MLFLPESPRWLIEKGRLEEAKRSLKRLRGLSPEDVEVELELLKIKLLVEAEVAEGKA  282 (513)
T ss_pred             CCccHHHHHHHHHHHHHHHHHH-HHhCCCChHHHHHcCChHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhhhcccccc
Confidence            2 48999999999988888777 7777888764322 222222222222111  00000           0000000111


Q ss_pred             hHHHHHh----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhHhHHHHHHHHHHHHHHHHHHHHHHhcC
Q 009978          316 PFRRLLS----KMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRG  391 (521)
Q Consensus       316 ~~~~~~~----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~  391 (521)
                      .++++++    ++.++...+..+....+.+.+..|.+.+++. .|.+... .....+.++...++..+..++.||+||| 
T Consensus       283 ~~~~l~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~-~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~gRr-  359 (513)
T KOG0254|consen  283 SWGELFSPKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKS-AGLKSDT-FLASIILGVVNFLGTLVATYLVDRFGRR-  359 (513)
T ss_pred             cHHHhcCcchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHh-cCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhccH-
Confidence            2233332    2334455566666666677778888888877 5766443 4555666777788888889999999998 


Q ss_pred             CCcchhHHHHHHHHHHHHHHHHHHHhcc------------chhHHHHHHHHHHHHH-HhhhhhhhHHHHHhhhc-cchhh
Q 009978          392 TSVTLTRKILQSIGFIAPGIALIGLTAA------------KSPVMASAWLTLAIGM-KSFSHSGFLVNLQEIAP-QYSGV  457 (521)
Q Consensus       392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~g~  457 (521)
                              .++..+...+.++...+...            ...+..+...++.... .....+..+.+..|..| +.|+.
T Consensus       360 --------~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~  431 (513)
T KOG0254|consen  360 --------KLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSK  431 (513)
T ss_pred             --------HHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhh
Confidence                    33334443333333322211            1122233333333333 23333445567788888 69999


Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHhhcccchHHHH-HHHHHHHHHHH-HHHHHhccCcccccc
Q 009978          458 LHGISNTAGTFAAILGTVGAGFFVELVGSFQGFL-LLTSLLYFLSA-LFYIIFSTGERVNFD  517 (521)
Q Consensus       458 ~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~  517 (521)
                      +.++...+.++...+-....-.+.+..+ ....| .+.+++.+... ..+...++.+.+..+
T Consensus       432 ~~s~~~~~n~~~~~~v~~~~~~~~~~~~-~~~~f~~f~~~~~~~~~~fv~~~~pETkg~sle  492 (513)
T KOG0254|consen  432 GASLAVAVNWLWNFLISFFFPFITEALG-IGGTFGYFGGICLLSLIIFVFFFVPETKGLTLE  492 (513)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHHheEEcccCCCCcHH
Confidence            9999999999888877777666666543 23333 33344333333 344455555554443

>PTZ00207 hypothetical protein; Provisional

Probab=99.95  E-value=6.1e-24  Score=212.05  Aligned_cols=409  Identities=12%  Similarity=0.018  Sum_probs=280.7

Q ss_pred             cchhHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHH
Q 009978           94 TSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVAL  173 (521)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~  173 (521)
                      ..++|..+.......... ...+.++...+.+.+++|+|..+++++.++. .....++++.|++.||+|+|+++.++.++
T Consensus        23 e~~Rw~~lva~~~~~~~~-g~~y~fsv~s~~L~~~lgls~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll  100 (591)
T PTZ00207         23 EPRRFALLVLGAFCSICT-SFMYAFNLISGAMQARYNLTQRDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTV  100 (591)
T ss_pred             ccchHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence            345566555544444433 3445777888999999999999999998874 34456788899999999999999999999


Q ss_pred             HHHHHhhhhhccc----cchHHHHHHHHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHhh
Q 009978          174 WSLATFLTPWAAD----TSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILM  249 (521)
Q Consensus       174 ~~~~~~l~~~~~~----~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~  249 (521)
                      ++++.++++++..    ++++.+++.|++.|+|.+...+.....+.+|+| ++||++.|+...+.++|.++.+.+...+.
T Consensus       101 ~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~  179 (591)
T PTZ00207        101 FCLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFF  179 (591)
T ss_pred             HHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999888521    479999999999999999989999999999996 78999999999999999986444444433


Q ss_pred             hccCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCC-----CCchhHHHHH------------------------------
Q 009978          250 SQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHP-----QISKYELEYI------------------------------  294 (521)
Q Consensus       250 ~~~gw~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~-----~~~~~~~~~~------------------------------  294 (521)
                      . .+|+..|++.+++.++..++.+.+.++.|....     ..+++|....                              
T Consensus       180 ~-~~~~~~fl~l~vl~~vv~ll~~~~vr~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~q~~p~~~f~~~~~i~~~l~~y  258 (591)
T PTZ00207        180 S-DNTSAYFFFLMSFALVVGILAIVFMRLPPFHLTGYQEKHLDEEEKAQRLMRKGVYLKQKAPMWRFVYGFVILIILIVF  258 (591)
T ss_pred             H-HhHHHHHHHHHHHHHHHHHHHHhheeCCcchhhcccccCCCHHHHHHHhhhhhhhhhcCCCceehhhHHHHHHHHHHH
Confidence            3 368899999988888877776666655543211     1112221100                              


Q ss_pred             ------HHh----------------h----------------cccccc-C-----------------CC--------C-C
Q 009978          295 ------LRE----------------K----------------QKPLLM-G-----------------NK--------H-K  309 (521)
Q Consensus       295 ------~~~----------------~----------------~~~~~~-~-----------------~~--------~-~  309 (521)
                            .+.                .                +...+. +                 .+        + .
T Consensus       259 l~~~~~~~~~~~~~~~~~~~~~~v~~~lll~~p~l~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (591)
T PTZ00207        259 LPLQGALVAYLKLGSNFKVGFAVTVIVLTVIFPFMAFPLTTFDGKRPHDDSDGKAKEHVEAGEEVSAAEDKVVETDVDYI  338 (591)
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCcCCCccccccccccccccccccccccccccccCC
Confidence                  000                0                000000 0                 00        0 0


Q ss_pred             CCCCCchHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccc--chhHhHHHHHHHHHHHHHHHHHHHHH
Q 009978          310 PATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQ--ASWFSAVPWSVMAFTGYLGGLLSDML  387 (521)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~i~~~~~g~l~dr~  387 (521)
                      ......++++.+++..+|++.+..++.......+...+.++.+..-|.+...  ...+.++.++++.+|++..|.+....
T Consensus       339 ~P~~~~t~~q~l~~~d~Wll~~~~~cg~g~gl~~~~N~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~  418 (591)
T PTZ00207        339 APQFQETFIEGLKTARLWCLLWSIFCCVGAHFVIIFNARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWS  418 (591)
T ss_pred             CCCCcchHHHHHhchhHHHHHHHHHHhhCchheeeecHHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHHH
Confidence            0111237888899999999999999998888888888888888832763333  33377889999999999999998554


Q ss_pred             HhcCCCcchhHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhhhhhhhHHHHHhhhccchhhHHhHHHHHHH
Q 009978          388 IQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGISNTAGT  467 (521)
Q Consensus       388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~  467 (521)
                      .+|+...+..|...+.+..+ +.+..+.+........+.+..++.+...+..++.......|++.|+.|+-+.+.....-
T Consensus       419 ~~~~~~~r~prt~~l~~~~~-~~~~~lll~~~~p~~~L~~~~~lvg~~~G~~~~~~~~i~selFgk~~g~~yN~~~~a~p  497 (591)
T PTZ00207        419 QKRRAEDRVPITIALFIPSV-CIITMLTLFLTLPKAALPLPYFIAAFANGFMAATIALVTRTIFAKDPAKHYNFCFLGSV  497 (591)
T ss_pred             HhhccccccchhHHHHHHHH-HHHHHHHHHHHCCccHhHHHHHHHHHHhhHhHHHHHHHHHHHhccchHHHhhHHhHHHH
Confidence            44431111122233333333 33322222222221233444445555566777788888888888999999998888888


Q ss_pred             HHHHHH-HHHHHHHhhccc----c--------hHHHHHHHHHHHHHHHHHHHH
Q 009978          468 FAAILG-TVGAGFFVELVG----S--------FQGFLLLTSLLYFLSALFYII  507 (521)
Q Consensus       468 ~g~~~~-~~~~g~l~~~~g----~--------~~~~~~~~~~~~~~~~~~~~~  507 (521)
                      +|..+- -.+.|.++|.-.    +        +...|++.+++++++.+....
T Consensus       498 igs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~  550 (591)
T PTZ00207        498 LSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTY  550 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhh
Confidence            888877 568888887421    1        567888888888877776544

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.94  E-value=1.8e-23  Score=202.46  Aligned_cols=373  Identities=14%  Similarity=0.141  Sum_probs=265.2

Q ss_pred             HHHHHHHhhhhhhhhhhhhhhhhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhc-chHHHHHHHHHHHHHHhhhhh
Q 009978          105 ALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYG-GKIIMAWGVALWSLATFLTPW  183 (521)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~G-rr~~~~~~~~~~~~~~~l~~~  183 (521)
                      +..+++.++....+.+..+.+.++.|.|..|+|.+.++..+...++++++|.++||++ +||.+.+..++.++.......
T Consensus         8 s~~~f~~f~~~G~~~p~~~~~L~~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~   87 (400)
T PF03825_consen    8 SLMYFLYFFAYGAFLPYLPLYLESRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAF   87 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            4456666666778888899999999999999999999999999999999999999986 577777777777766666666


Q ss_pred             ccccchHHHHHHHHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHH-HHHhhhccCc---hhHHH
Q 009978          184 AADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVL-SPILMSQAGI---FGPFV  259 (521)
Q Consensus       184 ~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l-~~~l~~~~gw---~~~f~  259 (521)
                      .  ++++.+++..++..+......|...++..+...  +++.-+|-.....++|.+++... ++.+....++   ...++
T Consensus        88 ~--~~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~--~~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~  163 (400)
T PF03825_consen   88 S--SSFWWLFVIMLLFSFFFSPTMPLSDSIALSYLG--DRGKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFY  163 (400)
T ss_pred             h--ccHHHHHHHHHHHHHHHccHHHHHHHHHHHHcc--cccCCCCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHH
Confidence            6  788888888888888888889999999988875  44566777777788888777554 2333333232   33455


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHHhhccccccCCCCCCCCCCchHHHHHhcchHHHHHHHHHHHHHH
Q 009978          260 IFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWG  339 (521)
Q Consensus       260 ~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  339 (521)
                      +.++..++.....+ ..|+.|.++.                    .++..++....+..+++|+|+++.+.+..++....
T Consensus       164 i~~~~~~ll~~~~l-~lp~~~~~~~--------------------~~~~~~~~~~~~~~~llk~~~~~~Fll~~~l~~~~  222 (400)
T PF03825_consen  164 IAAILSLLLAGFAL-FLPKTPPKRS--------------------AKESVKKLLGLDALKLLKNPRFLVFLLAAFLIGIS  222 (400)
T ss_pred             HHHHHHHHHHHHHH-hCCCCccccc--------------------cCCCcccccchHHHHHhcCccHHHHHHHHHHHHHH
Confidence            55555444333333 3455442211                    11111122223445799999999999999999889


Q ss_pred             HHHHHHHHHHHHHHHhCCCcccchhHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHhcc
Q 009978          340 FFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAA  419 (521)
Q Consensus       340 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (521)
                      ......+.+.|+++.-|.+....+...++..++.++.-...+++.+|++.+         .++.++.+..++-...+...
T Consensus       223 ~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~---------~ll~~a~~~~~vR~~l~a~~  293 (400)
T PF03825_consen  223 HAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIK---------WLLLLALVAYAVRWLLYAYF  293 (400)
T ss_pred             HHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH---------HHHHHHHHHHHHHHHHHHHh
Confidence            999999999999994337777788888888888888888999999999887         45566666666666555554


Q ss_pred             -chhHHHHHHHH----HHHHHHhhhhhhhHHHHHhhhc-cchhhHHhHHHHHH-HHHHHHHHHHHHHHhhcccc-----h
Q 009978          420 -KSPVMASAWLT----LAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAG-TFAAILGTVGAGFFVELVGS-----F  487 (521)
Q Consensus       420 -~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~-~~g~~~~~~~~g~l~~~~g~-----~  487 (521)
                       ++.+.......    +.+...+........+.++..| +.|++++++++... .+|..+|..++|+++|+.|.     +
T Consensus       294 ~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~  373 (400)
T PF03825_consen  294 SDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDW  373 (400)
T ss_pred             cCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhH
Confidence             33333333332    2444445555666667777666 68999999988875 59999999999999998872     2


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhccC
Q 009978          488 QGFLLLTSLLYFLSALFYIIFSTG  511 (521)
Q Consensus       488 ~~~~~~~~~~~~~~~~~~~~~~~~  511 (521)
                      ...+.+.+++.++..++++++.|+
T Consensus       374 ~~~~~v~a~~~~~~~~~f~~~fk~  397 (400)
T PF03825_consen  374 SAVFLVFAVMALVILVLFVILFKP  397 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhccC
Confidence            345555555555555555554433

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.94  E-value=8.4e-24  Score=209.51  Aligned_cols=365  Identities=16%  Similarity=0.113  Sum_probs=245.0

Q ss_pred             HHHHHHHHhhhhhhhhhhhhhhhhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHHHHHHHhhhhh
Q 009978          104 LALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPW  183 (521)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~l~~~  183 (521)
                      +++.....++........++.+..|+|-+ ....|+.+.+.++..++.++.|+++|.+|||..++.+.++..+|.++++.
T Consensus        49 ~~~~~~~~~~~~~~~a~~l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~at  127 (599)
T PF06609_consen   49 FSLAVIAAYFVLVLPASILPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCAT  127 (599)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhc
Confidence            34444444555556677788999999865 67789999999999999999999999999999999999999999999999


Q ss_pred             ccccchHHHHHHHHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHhhhccCchhHHHHHHH
Q 009978          184 AADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGL  263 (521)
Q Consensus       184 ~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gw~~~f~~~~~  263 (521)
                      +  +|...++.+..+.|+|.|... .....++|..|.|.|....++.....-.....++.++..+....+|||.|++.++
T Consensus       128 A--~~~~~~iag~~l~GvgaG~~~-~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i  204 (599)
T PF06609_consen  128 A--QNMNTFIAGMVLYGVGAGVQE-LAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFII  204 (599)
T ss_pred             C--CcHHHHHHHHHHHHHhhHHHH-HHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHH
Confidence            9  999999999999999977655 4566699999999998888877766666666788888777777799999999988


Q ss_pred             HHHHHHHHHHHhcCCCCCC--CCC-Cch-hHHHHHHH----------------h---hccccccCC--------------
Q 009978          264 SGFLWVLVWLSATSSTPDR--HPQ-ISK-YELEYILR----------------E---KQKPLLMGN--------------  306 (521)
Q Consensus       264 ~~~i~~i~~~~~~~~~~~~--~~~-~~~-~~~~~~~~----------------~---~~~~~~~~~--------------  306 (521)
                      ...+.+++.+++..+++++  +.+ ..+ ++.++..-                -   .......++              
T Consensus       205 ~~~i~~vl~~~fY~PP~~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~lviG~~~L  284 (599)
T PF06609_consen  205 WSGIALVLIFFFYFPPPRAQLHGRKLSKREQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAPLVIGFVLL  284 (599)
T ss_pred             HHHHHHHHHHHHhCCCchhhhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHHHHHHHH
Confidence            7776655444333222211  111 111 11111000                0   000000000              


Q ss_pred             --------CCCCCCCCchHHHHHhc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc---cchhHhHHHHHHHH
Q 009978          307 --------KHKPATVIPPFRRLLSK-MPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLR---QASWFSAVPWSVMA  374 (521)
Q Consensus       307 --------~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~  374 (521)
                              ....+++.-+. +++|+ |.+...+++.++....++....+.|......++-++.   ..++.....+++..
T Consensus       285 v~F~~wE~~~~~~~Pl~P~-~Lf~~~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~  363 (599)
T PF06609_consen  285 VAFVVWEWFGAPKDPLFPH-RLFKDRRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSC  363 (599)
T ss_pred             HHHHHhhhhccCCCCcCCH-HHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHH
Confidence                    01112223333 67777 4566666777777777888888889888877776653   56777788888888


Q ss_pred             HHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHH--HHHHHHhccchhHHHHHHHHHHHHHHhhhhhhhHHHHH-hhh
Q 009978          375 FTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPG--IALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQ-EIA  451 (521)
Q Consensus       375 i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  451 (521)
                      ++.++.+.+..++++.|        ..+.++.....  ++.+.....++....+...++.....+..........+ ..+
T Consensus       364 ~g~~i~g~l~~~ir~~K--------w~li~~~~~~ta~~Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p  435 (599)
T PF06609_consen  364 AGAVILGLLFSKIRHIK--------WQLIFGSVLMTAFCGAMAAVRPDNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVP  435 (599)
T ss_pred             HHHHHHHHHHHHccchh--------HHHHHHHHHHHHHHHHHHHccCCCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeC
Confidence            99999999998876552        23223333222  23333333333333333333333332332222333333 344


Q ss_pred             ccchhhHHhHHHHHHHHHHHHHHHHHHHHh
Q 009978          452 PQYSGVLHGISNTAGTFAAILGTVGAGFFV  481 (521)
Q Consensus       452 ~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~  481 (521)
                      +++-|++.|+..+++.+|+.+|..+...+.
T Consensus       436 ~~~ig~a~gL~~s~R~~GGsIg~aIy~~I~  465 (599)
T PF06609_consen  436 DEDIGTATGLTGSIRSIGGSIGYAIYNAIF  465 (599)
T ss_pred             chHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            479999999999999999999988876655

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=99.94  E-value=1.5e-26  Score=213.89  Aligned_cols=414  Identities=13%  Similarity=0.154  Sum_probs=288.3

Q ss_pred             cccchhHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhh-c-------CCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcc
Q 009978           92 FITSERVKVVSMLALALALCNADRVVMSVAIVPLSLAH-G-------WSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGG  163 (521)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-------~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Gr  163 (521)
                      ..++++...+.+..++.+.+.++...++...+.+...+ +       .++...+.+..+..+|.++|++++|++.||+||
T Consensus        34 g~qw~~fk~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GR  113 (538)
T KOG0252|consen   34 GLQWKHFKAIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGR  113 (538)
T ss_pred             chhHHHHHHHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            34566778888889999999999999999888876654 2       455667889999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhhhhhccc-----cchHHHHHHHHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhh
Q 009978          164 KIIMAWGVALWSLATFLTPWAAD-----TSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGN  238 (521)
Q Consensus       164 r~~~~~~~~~~~~~~~l~~~~~~-----~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~  238 (521)
                      |+++...++++.++++++++...     .-.+++...|++.|+|.|+-+|...+..+|...+++||...+.+.+..++|.
T Consensus       114 K~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~Gi  193 (538)
T KOG0252|consen  114 KKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGI  193 (538)
T ss_pred             hhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhH
Confidence            99999999999999988777632     1256788999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHHHhhhcc---------------CchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCC--CchhHHHHHHHh-hcc
Q 009978          239 AIGLVLSPILMSQA---------------GIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQ--ISKYELEYILRE-KQK  300 (521)
Q Consensus       239 ~~g~~l~~~l~~~~---------------gw~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~  300 (521)
                      +.|.+++-.+..-+               =||..+.+.++.+++.... ....||+++-...  .+.+......++ ...
T Consensus       194 laG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~-Rl~M~Et~~Y~al~~~~~~~a~~d~~k~~~~  272 (538)
T KOG0252|consen  194 LAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYF-RLKMPETARYTALVSKKLKQAAGDMKKVLSV  272 (538)
T ss_pred             hhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHh-hhcCCcchhHHHHhhcCHhhhhhcccccccc
Confidence            88888776664311               2898887777776654433 3334554432210  000000000000 000


Q ss_pred             ccccC-----CCCCCCCCCchHHHHHhc---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchh--------
Q 009978          301 PLLMG-----NKHKPATVIPPFRRLLSK---MPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASW--------  364 (521)
Q Consensus       301 ~~~~~-----~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--------  364 (521)
                      ....+     ..+.+++....+...+..   +.++..+..+|+.-.+++....+...++++ .|+.+.....        
T Consensus       273 ~~~~~~~~~~~~~~~~~~~~~F~~~f~~~hg~~Llgt~~~WFllDiafy~~nL~~s~I~~~-ig~~~~~~~~~~~~~vA~  351 (538)
T KOG0252|consen  273 DIEAESTAESDVPPPSNSFGLFSRLFLRWHGKHLLGTAGTWFLLDIAFYGQNLFQSVIFSA-IGVIPSANTYHELFKVAE  351 (538)
T ss_pred             ccchhhccccCCCCcccccchHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccHHHHHHHh-hccCCCcchHHHHHHHHH
Confidence            00000     001111112223233322   345566777777778888888888888887 5776655443        


Q ss_pred             HhHHHHHHH-HHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHhccch----hHHHHHHHHHHHHHHhhh
Q 009978          365 FSAVPWSVM-AFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKS----PVMASAWLTLAIGMKSFS  439 (521)
Q Consensus       365 ~~~~~~~~~-~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~  439 (521)
                      ...+...++ +.|..+...++|++||+         .+...++.+..+..+.+....+    .....+...+..++..++
T Consensus       352 ~~~iia~~~~vPGyw~tv~~id~iGRk---------~iq~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFG  422 (538)
T KOG0252|consen  352 GNLIIAVCSTVPGYWFTVYFIDIIGRK---------YIQLMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFG  422 (538)
T ss_pred             HHHHHHHHccCCceeEEEEEeehhhhH---------HHHHhhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcC
Confidence            111222222 22445566789999999         5666777777776666654433    122333344444555555


Q ss_pred             hhh-hHHHHHhhhc-cchhhHHhHHHHHHHHHHHHHHHHHHHHhh-----cccchHHHHHHHHHHHHHHHHHHHHhccCc
Q 009978          440 HSG-FLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVE-----LVGSFQGFLLLTSLLYFLSALFYIIFSTGE  512 (521)
Q Consensus       440 ~~~-~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  512 (521)
                      +.. ...+..|.+| +.|++..|+..+.+..|++++....+++.+     ..| ....+++.+.+.+++.+..+++++.+
T Consensus       423 Pn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g-~~~v~~i~~~~~~~gi~~T~l~pEtk  501 (538)
T KOG0252|consen  423 PNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIG-VRNVFIILAGCMLLGILFTLLIPETK  501 (538)
T ss_pred             CCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhccCCcccc-chHHHHHHHHHHHHhHheeEEeeccc
Confidence            443 3566778888 599999999999999999999999999999     666 88999999999999999988888766


Q ss_pred             ccccc
Q 009978          513 RVNFD  517 (521)
Q Consensus       513 ~~~~~  517 (521)
                      +++.+
T Consensus       502 ~~~le  506 (538)
T KOG0252|consen  502 GKSLE  506 (538)
T ss_pred             ccCHH
Confidence            65543

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.94  E-value=3e-23  Score=196.61  Aligned_cols=379  Identities=17%  Similarity=0.114  Sum_probs=259.9

Q ss_pred             HHHHHHHHhhhhhhhhhhhhhhhhh-hcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHHH--HHHH-h
Q 009978          104 LALALALCNADRVVMSVAIVPLSLA-HGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALW--SLAT-F  179 (521)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~--~~~~-~  179 (521)
                      ..+.++..++..+...+..+...++ .|+|.+++|.+.++..+...+.+|+.|.+.||+|.||-++....+.  ..+. +
T Consensus        12 ~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff   91 (412)
T PF01306_consen   12 LSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFF   91 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHH
Confidence            3445555556666777777777765 8999999999999999999999999999999999777655433222  2222 2


Q ss_pred             hhhhcc--ccch-HHHHHHHHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHhhhccCchh
Q 009978          180 LTPWAA--DTSL-LALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFG  256 (521)
Q Consensus       180 l~~~~~--~~~~-~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gw~~  256 (521)
                      ...+.+  ..|. ...+++-+..|+......|+..+++.++.  ++.+.-.|-.....++|.+++..++|.+.+ .+-+.
T Consensus        92 ~~v~~pll~~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~s--r~~~feYG~~R~wGSig~ai~s~~~G~L~~-i~p~~  168 (412)
T PF01306_consen   92 IYVFGPLLQSNFWLGAIIGGIYLGLVFNAGVPLSEAYAERVS--RRNGFEYGRARMWGSIGFAIASLLAGILFN-INPNI  168 (412)
T ss_dssp             HHTHHHHHHTT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHHH--HHHSS-HHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHH--HHhcCCcchHHHHhhHHHHHHHHHhheeee-eCccH
Confidence            222221  1232 23344445556666666788888887775  556677888889999999999999999987 35677


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHHhhccccccCCCCCCCCCCchHHHHHhcchHHHHHHHHHHH
Q 009978          257 PFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMH  336 (521)
Q Consensus       257 ~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  336 (521)
                      .|++....+++..++.+...|+.+++.+..+.                ...++++...++..+++|+|++|.+.+.....
T Consensus       169 ~fwi~s~~~~il~lll~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~l~k~~~fw~~~l~v~g~  232 (412)
T PF01306_consen  169 IFWIASAAAIILLLLLLLLKPDVPPQAEVADA----------------LGAKKDKVSLKDVLSLFKMRNFWFFVLFVIGV  232 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHSS---SSSSS-SSTT----------------SSS------HHHHHHHTTSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCCcCchhhhhhcc----------------cccCCCCCcHHHHHHHhcchhHHHHHHHHHHH
Confidence            88877766666555555554444332211100                11112222345567899999999999988888


Q ss_pred             HHHHHHHHHHHHHHHHHHh---CCCcccchhHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHH
Q 009978          337 SWGFFVILSWMPIYFNFVY---HIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIAL  413 (521)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~  413 (521)
                      ...+..+....+.|....+   +.+....|.+.++..+..++...+.+++.+|+|.|         ..+.++..+..+-.
T Consensus       233 ~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k---------~~Lllag~i~~iRi  303 (412)
T PF01306_consen  233 AAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAK---------NLLLLAGVIMAIRI  303 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH---------HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChH---------hHHHHHHHHHHHHH
Confidence            8888888888888887633   23445688888898899999999999999999999         44555666677777


Q ss_pred             HHHhccchhHHHHHHHHHHHHHHhhhhhhhHHHHHhhhc-cchhhHHhHH-HHHHHHHHHHHHHHHHHHhhcccchHHHH
Q 009978          414 IGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGIS-NTAGTFAAILGTVGAGFFVELVGSFQGFL  491 (521)
Q Consensus       414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~-~~~~~~g~~~~~~~~g~l~~~~g~~~~~~  491 (521)
                      ......++++.....=.+.............-+..+..| +..++.+.+. +...++|.++.+.+.|.++|+.| ++.+|
T Consensus       304 ~~~~~~~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G-~~~ty  382 (412)
T PF01306_consen  304 IGSGFATNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIG-FQHTY  382 (412)
T ss_dssp             HHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHH-HHHHH
T ss_pred             HHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcC-cHHHH
Confidence            777778888877777677776666666666666777766 5678888885 57778999999999999999998 88888


Q ss_pred             HHHHHHHHHHHHHHHHhccC
Q 009978          492 LLTSLLYFLSALFYIIFSTG  511 (521)
Q Consensus       492 ~~~~~~~~~~~~~~~~~~~~  511 (521)
                      ++.+.+.+...++..+..++
T Consensus       383 limg~iv~~~~li~~f~l~~  402 (412)
T PF01306_consen  383 LIMGLIVLPFTLISAFTLKK  402 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHS--
T ss_pred             HHHHHHHHHHHHHheeeecC
Confidence            88887776666555544433

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.94  E-value=6.3e-26  Score=196.09  Aligned_cols=391  Identities=15%  Similarity=0.179  Sum_probs=266.7

Q ss_pred             chhHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhH-hcchHHHHHHHHH
Q 009978           95 SERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDY-YGGKIIMAWGVAL  173 (521)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr-~Grr~~~~~~~~~  173 (521)
                      .+|...+..+++..+-+++.....+....++.++.+++.++..++.+.|.....+.++++|++.|| +|.|..-++-+..
T Consensus        40 ~hr~m~lv~mc~lgfgsyfcyd~p~alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~f  119 (459)
T KOG4686|consen   40 GHRFMALVFMCLLGFGSYFCYDAPGALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIF  119 (459)
T ss_pred             hhHHHHHHHHHHhcccceeecCCchhhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHH
Confidence            445666777777778888888888888888999999999999999999999999999999999998 5887766665666


Q ss_pred             HHHHHhhhhhcc-ccchHHHHHHHHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHhhhcc
Q 009978          174 WSLATFLTPWAA-DTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQA  252 (521)
Q Consensus       174 ~~~~~~l~~~~~-~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~  252 (521)
                      ..++.++++.-. .+.+|.+..+|++.|+|.-...++.++++.-||..|+.+.++|+......+|..+--.+.+++.+..
T Consensus       120 v~~GqliFa~Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~~~  199 (459)
T KOG4686|consen  120 VFLGQLIFAAGGISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYDTM  199 (459)
T ss_pred             HHHHHHHHHhchHHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHHHH
Confidence            666666554321 2789999999999999988888899999999999999999999999999999988888888877654


Q ss_pred             Cc------hh---HHHHHHHHHHH-HHHHHHHhcCCCCCCCCCCchhHHHHHHHhhccccccCCCCCCCCCCchHHHHHh
Q 009978          253 GI------FG---PFVIFGLSGFL-WVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLS  322 (521)
Q Consensus       253 gw------~~---~f~~~~~~~~i-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (521)
                      +-      +.   ..+..+..... ..+.....        ... ++..+.+....+.      ...+.++..+.+.  -
T Consensus       200 ~~~~~~~ghT~LG~~l~~~~~tc~~slical~l--------g~~-D~rAerilh~e~g------~~Ge~pkLtdv~~--f  262 (459)
T KOG4686|consen  200 GRMFPGVGHTLLGLWLCFEVKTCKQSLICALSL--------GLS-DDRAERILHLEEG------FLGEEPKLTDVNT--F  262 (459)
T ss_pred             HHhcccchHHHHHHHHHHHHHHHHHHHHHHHHh--------hhh-hhHHHHHHhhhcC------cccCCcccccccc--c
Confidence            31      11   11111111111 11111110        000 0011111110000      0001111111111  1


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHH
Q 009978          323 KMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQ  402 (521)
Q Consensus       323 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~  402 (521)
                      .|.+|.+.++.++++.+.+-+....|.++++++|+|+..++.+.+.....+.+.+++.|.++||+|++-+       ++ 
T Consensus       263 ~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~-------wv-  334 (459)
T KOG4686|consen  263 YPPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLW-------WV-  334 (459)
T ss_pred             CccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceeh-------hH-
Confidence            5789999999999999999999999999999999999999999999999999999999999999999821       11 


Q ss_pred             HHHHHHHHHH--HHHHhccchhHHHHHHHHHHHHHHhhhhhhhHHHHHhhhcc-chhhHHhHHHHHHHHHHHHHHHHHHH
Q 009978          403 SIGFIAPGIA--LIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQ-YSGVLHGISNTAGTFAAILGTVGAGF  479 (521)
Q Consensus       403 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~g~~~~~~~~g~~~~~~~~g~  479 (521)
                      ..+.+.....  .+.+.. -+++...  .+++. .........+..+..+.|| +.|+++|.++.+.++|-.+.|.+.|.
T Consensus       335 ~~a~~~tl~~H~~l~Ft~-lsPy~~m--~~lGL-sysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~  410 (459)
T KOG4686|consen  335 ASACILTLLGHSGLFFTF-LSPYTSM--TFLGL-SYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGF  410 (459)
T ss_pred             HHHHHHHHHHhhhHHhhh-ccHHHHH--HHHhh-hHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhhe
Confidence            1111111111  112221 2233221  22222 2222223344455566665 88999999999999999999999999


Q ss_pred             Hhhcccch---HHHHHHHHHHHHHHHHHHHHhccCccc
Q 009978          480 FVELVGSF---QGFLLLTSLLYFLSALFYIIFSTGERV  514 (521)
Q Consensus       480 l~~~~g~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~  514 (521)
                      +.|.-|+|   ...|+..+.+.+....+.+.+.++++-
T Consensus       411 i~d~~g~y~~le~ffl~~~~~aL~svgil~~~N~kq~g  448 (459)
T KOG4686|consen  411 IADGDGSYDNLEAFFLIIGLMALTSVGILFYLNKKQSG  448 (459)
T ss_pred             eecCCCchhhHHHHHHHHHHHHHHHHHHHhheeccccC
Confidence            99988755   345556666666666666666555443

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.94  E-value=5.4e-23  Score=206.95  Aligned_cols=394  Identities=14%  Similarity=0.123  Sum_probs=228.2

Q ss_pred             HHHHHHHHHhhhhhhhhhhh-hhhhhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhH-hcchHHHHHHHHHHHHHHhh
Q 009978          103 MLALALALCNADRVVMSVAI-VPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDY-YGGKIIMAWGVALWSLATFL  180 (521)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr-~Grr~~~~~~~~~~~~~~~l  180 (521)
                      .+++..+...+..+.+...+ .++.+++|++..+.+++.+.+........+++|+++|| +|||+++.++.++.+++.++
T Consensus        25 ~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l  104 (500)
T PRK09584         25 LIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYAL  104 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHH
Confidence            34444444555544454444 44568899999999999888877777777899999999 59999999999999999888


Q ss_pred             hhhccccchHHHHHHHHHHhhhhcchhhHHHHHHHhcCCchh--hHHHHHHHHhhhhhhhHHHHHHHHHhhhccCchhHH
Q 009978          181 TPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTE--RARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPF  258 (521)
Q Consensus       181 ~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gw~~~f  258 (521)
                      ++++. ++.+.++++|+++|+|.|...+...+++.|++|+++  |+.++++++.+.++|..+||.+++++.+.+|||+.|
T Consensus       105 ~~~~~-~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F  183 (500)
T PRK09584        105 VAWSG-HDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAF  183 (500)
T ss_pred             HHHhc-ccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHH
Confidence            87761 245667788999999999988999999999997543  456889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHH---HHhcCCCCCCCC--CCchhHHHHHH-----HhhccccccCCCCCCCC---------------C
Q 009978          259 VIFGLSGFLWVLVW---LSATSSTPDRHP--QISKYELEYIL-----REKQKPLLMGNKHKPAT---------------V  313 (521)
Q Consensus       259 ~~~~~~~~i~~i~~---~~~~~~~~~~~~--~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~---------------~  313 (521)
                      ++.++..++..+..   ....++.+++..  ..+........     -...........+....               .
T Consensus       184 ~i~~i~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (500)
T PRK09584        184 ALSVVGMLITVVNFAFCQRWVKQYGSKPDFEPINYRKLLLTIVGVVALIAIATWLLHNQEIARMALGVVALGIVVIFGKE  263 (500)
T ss_pred             HHHHHHHHHHHHHHHHhHHHhccCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence            99876544433322   222233211111  01111000000     00000000000000000               0


Q ss_pred             CchHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhCCCcc------cchhHhHHHHHHHHHHHHHHHHHHH
Q 009978          314 IPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNF--VYHIDLR------QASWFSAVPWSVMAFTGYLGGLLSD  385 (521)
Q Consensus       314 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~g~~~~------~~~~~~~~~~~~~~i~~~~~g~l~d  385 (521)
                      ....++.-++ +.+..++ .++....++......+.++..  ..+.+..      ..+++.++..+..++..++..++.+
T Consensus       264 ~~~~~~~~~~-~~~~~~~-~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~  341 (500)
T PRK09584        264 AFAMKGAARR-KMIVAFI-LMLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYN  341 (500)
T ss_pred             HhhcCHHHHH-HHHHHHH-HHHHHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            0000011112 2222222 223334444555555555443  1112211      2455666677777777777777777


Q ss_pred             HHHhcCCCcchhHHHHHHHHHHHHHHHHHHHhccc----------hhHHHHHHHHHHHHHHhhhhhhhHHHHHhhhc-cc
Q 009978          386 MLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAK----------SPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QY  454 (521)
Q Consensus       386 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  454 (521)
                      |.++|..   ..  ....+++++.+++.+.+....          ..+.....++.+.+.. ...+....+..+..| +.
T Consensus       342 ~l~~r~~---~~--~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~-~~~p~g~s~~~~~aP~~~  415 (500)
T PRK09584        342 KMGDRLP---MP--HKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGEL-MISGLGLAMVAQLVPQRL  415 (500)
T ss_pred             HhCcCCC---cH--HHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHH-HHhHHHHHHHHHhCcHHH
Confidence            7765521   12  233444444444444432221          1233333334444444 444555555555555 69


Q ss_pred             hhhHHhHHHHHHHHHHHHHHHHHHHHhh---------cccchHHHHHHHHHHHHHHHHHH
Q 009978          455 SGVLHGISNTAGTFAAILGTVGAGFFVE---------LVGSFQGFLLLTSLLYFLSALFY  505 (521)
Q Consensus       455 ~g~~~g~~~~~~~~g~~~~~~~~g~l~~---------~~g~~~~~~~~~~~~~~~~~~~~  505 (521)
                      ||+++|++.....+|..++..+.+....         ..+++...|...++..++..+++
T Consensus       416 rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~  475 (500)
T PRK09584        416 MGFIMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVLM  475 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            9999998877777777776666653221         11236677777776655444333

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=99.93  E-value=1.3e-23  Score=214.52  Aligned_cols=367  Identities=16%  Similarity=0.097  Sum_probs=247.7

Q ss_pred             hhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhhhcc
Q 009978          126 SLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGV  205 (521)
Q Consensus       126 ~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~r~l~G~g~~~  205 (521)
                      .+.+..+.....+..+++.+|..+|++++|+++||+|||++++.+.++..++.++.+++  +|++.+++.|++.|++.++
T Consensus       110 ~~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a--~~~~~~~~~Rfl~G~~~~~  187 (521)
T KOG0255|consen  110 WNLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFA--PNYWMFLIFRFLSGFFGSG  187 (521)
T ss_pred             hceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHh--CcHHHHHHHHHHHHhhccc
Confidence            35567788888999999999999999999999999999999999999999999999999  9999999999999999999


Q ss_pred             hhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCC
Q 009978          206 ALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQ  285 (521)
Q Consensus       206 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gw~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~  285 (521)
                      .......++.|++++++|+.+..+ ......+..++++.++++..  +||+.+++..++.++.+++ +++.+|+|+....
T Consensus       188 ~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~-~~l~~Es~rwl~~  263 (521)
T KOG0255|consen  188 PLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLL-WFLPPESPRWLLS  263 (521)
T ss_pred             hhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHH-HHccCcChHHHHH
Confidence            999999999999999999999999 77777888888888888877  8999999999988876665 5566677764322


Q ss_pred             C-chhHHHHHHHhhcc------cc----cc----C-CCCCCCCCCchHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 009978          286 I-SKYELEYILREKQK------PL----LM----G-NKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPI  349 (521)
Q Consensus       286 ~-~~~~~~~~~~~~~~------~~----~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  349 (521)
                      . +.++.....++..+      ..    ..    . .......+...+..+++.|++....+...+.++.......-++.
T Consensus       264 ~g~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~y~gl~~  343 (521)
T KOG0255|consen  264 KGRIDEAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDLFRTPRLRYRTLYLLFIWFVFSLVYYGLSL  343 (521)
T ss_pred             cCchHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhhhcCHHHHHHHHHHHHHHHHHhHHHHhhhh
Confidence            2 12222222222110      00    00    0 00011122234667788776555555444444333333332333


Q ss_pred             HHHHHhCCCcccchhHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHhccc--hh-HHHH
Q 009978          350 YFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAK--SP-VMAS  426 (521)
Q Consensus       350 ~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~  426 (521)
                      .... +|.+.   .......+.....+....+...|+.|||         .....+.....++++......  .. +...
T Consensus       344 ~~~~-lg~~~---~~~~~~~~~~~~p~~~~~~~~~~~~gR~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  410 (521)
T KOG0255|consen  344 NVSG-LGGNI---YLNFTLSGLVELPAYFRNGLLLPEFGRR---------PPLFLSLFLAGIGLLLFGWLPDDLGGWLHW  410 (521)
T ss_pred             hhhh-cCchH---HHHHHHHHHHHhhHHHHHHHHHHHhCcH---------HHHHHHHHHHHHHHHHHHHhhccchhHHHH
Confidence            3322 34332   2333344445666667778899999877         344444444444444443332  22 2344


Q ss_pred             HHHHHHHHHHhhhhhhhHHHHHhhhcc-chhhHHhHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHH-HHHH
Q 009978          427 AWLTLAIGMKSFSHSGFLVNLQEIAPQ-YSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFL-SALF  504 (521)
Q Consensus       427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~-~~~~  504 (521)
                      ....++.+.........+.+..|..|. .|+.+.+.......++.+++|.+.-......  ....+...+....+ +.+.
T Consensus       411 ~~~~~~~~~~~~~~~~~~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~  488 (521)
T KOG0255|consen  411 ILPLLGKFFIGSAFNLIFLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQMF--PLLGLILFGWLALLLGLLS  488 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc--ccchHHHHHHHHHHHHHHH
Confidence            555556666666666668888899985 9999999999999999999998875554422  22222223333333 3344


Q ss_pred             HHHhccCcc
Q 009978          505 YIIFSTGER  513 (521)
Q Consensus       505 ~~~~~~~~~  513 (521)
                      ..++++.+.
T Consensus       489 ~~~lpet~~  497 (521)
T KOG0255|consen  489 LLLLPETKG  497 (521)
T ss_pred             HhcCcccCC
Confidence            355555443

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.93  E-value=4.7e-22  Score=194.73  Aligned_cols=379  Identities=16%  Similarity=0.113  Sum_probs=247.2

Q ss_pred             HHHHhhhhhhhhhhhhhhhhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHh----HhcchHHHHHH-HHHHHHHHhhhh
Q 009978          108 LALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVD----YYGGKIIMAWG-VALWSLATFLTP  182 (521)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~d----r~Grr~~~~~~-~~~~~~~~~l~~  182 (521)
                      .+-..+.+....+..+++.+++|.+..+.+++..+..+...+.+++.|+++|    |+||||.++++ .+...++.++++
T Consensus        13 ~~Giq~~~~l~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~   92 (477)
T TIGR01301        13 AAGVQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIG   92 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHH
Confidence            3333455556667777788999999999999999999999999999999999    59999988774 666666666666


Q ss_pred             hccccchH-----------------HHHHHHHHHhhhhcchhhHHHHHHHhcCCchhh--HHHHHHHHhhhhhhhHHHHH
Q 009978          183 WAADTSLL-----------------ALLAMRAVVGLAEGVALPAMNNMVARWFPQTER--ARAVAIAMGGFTSGNAIGLV  243 (521)
Q Consensus       183 ~~~~~~~~-----------------~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r--~~~~~~~~~~~~~g~~~g~~  243 (521)
                      ++  +++.                 .++++-.+..++.....+...++++|.+|+++|  +.++++.+.+.++|.++|+.
T Consensus        93 ~~--~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~  170 (477)
T TIGR01301        93 FA--ADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYA  170 (477)
T ss_pred             hC--chhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            65  4432                 233333344557777888899999999998765  68999999999999999999


Q ss_pred             HHHHh--hhcc-------------CchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHHhhccccccCCCC
Q 009978          244 LSPIL--MSQA-------------GIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKH  308 (521)
Q Consensus       244 l~~~l--~~~~-------------gw~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (521)
                      ++++.  .+.+             +.|..|++.+++.++..++..+..+|.|...++..+++ +            .++.
T Consensus       171 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~~~-~------------~~~~  237 (477)
T TIGR01301       171 AGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFINS-E------------AAPP  237 (477)
T ss_pred             HHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccchhh-h------------cccc
Confidence            99875  2221             46888999888888877777777777654222111000 0            0000


Q ss_pred             CCCCCCchHHHHHh----c-chHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCCccc----------chhHhHHHHHH
Q 009978          309 KPATVIPPFRRLLS----K-MPTWSIIVANAMHSWGFFVILSWMPIYFNF-VYHIDLRQ----------ASWFSAVPWSV  372 (521)
Q Consensus       309 ~~~~~~~~~~~~~~----~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~----------~~~~~~~~~~~  372 (521)
                      ++......++++++    - |.++.+++..++.+++.+.+..|.+.|+.+ .++-++..          ..+......+.
T Consensus       238 ~~~~~~~~~~~i~~~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~  317 (477)
T TIGR01301       238 SKHGEEAFFGELFGAFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVV  317 (477)
T ss_pred             cccchhhhHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHH
Confidence            01111122333332    2 568889999999999999999999988874 45543321          12233344455


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHhccch----------------------hHHHHHHHH
Q 009978          373 MAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKS----------------------PVMASAWLT  430 (521)
Q Consensus       373 ~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~  430 (521)
                      ..+.+++..++.+|+|+|+        ....++.++.++++....+.+.                      .........
T Consensus       318 ~~i~s~~l~~l~~~~g~~k--------~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  389 (477)
T TIGR01301       318 LGITSIGMEKLCRGWGAGK--------RLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAI  389 (477)
T ss_pred             HHHHHHHHHHHHHHhccch--------hHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHH
Confidence            5566677778888887431        2323333333333222221110                      122222233


Q ss_pred             HHHHHHhhhhhhhHHHHHhhhc--cchhhHHhHHHHHHHHHHHHHHHHHHHHhhccc-chHHHHHHHHHHHHHHHHHHHH
Q 009978          431 LAIGMKSFSHSGFLVNLQEIAP--QYSGVLHGISNTAGTFAAILGTVGAGFFVELVG-SFQGFLLLTSLLYFLSALFYII  507 (521)
Q Consensus       431 ~~~~~~~~~~~~~~~~~~~~~~--~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~  507 (521)
                      ++.........+......+..+  +..|..+|+.|.+..+.+.+.....|.+.+..| +...++.+.++.++++.++.++
T Consensus       390 ~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~  469 (477)
T TIGR01301       390 LGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALI  469 (477)
T ss_pred             hhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHH
Confidence            3444443333333344444443  466999999999999999999999999777766 3456777777777777766555


Q ss_pred             hc
Q 009978          508 FS  509 (521)
Q Consensus       508 ~~  509 (521)
                      ..
T Consensus       470 ~~  471 (477)
T TIGR01301       470 LL  471 (477)
T ss_pred             hC
Confidence            43

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.93  E-value=2.3e-21  Score=191.35  Aligned_cols=360  Identities=18%  Similarity=0.124  Sum_probs=260.2

Q ss_pred             chhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHH-HHHHHHHHHhhhhhccccchHHHHHHHHHHhhhhcchhhHHHH
Q 009978          134 SFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAW-GVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNN  212 (521)
Q Consensus       134 ~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~-~~~~~~~~~~l~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~  212 (521)
                      +..++..++..+..++..|+.|.++|+-|+||.++. ...+..+++.++.+....+++...+.-++.-++.+...+..++
T Consensus        70 s~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna  149 (477)
T PF11700_consen   70 SLWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNA  149 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345678889999999999999999999988775554 4455555666666653345555555566666777888899999


Q ss_pred             HHHhcCCchhh--------------------------HHHHHHHHhhhhhhhHHHHHHHHHhhhc--------cCchhHH
Q 009978          213 MVARWFPQTER--------------------------ARAVAIAMGGFTSGNAIGLVLSPILMSQ--------AGIFGPF  258 (521)
Q Consensus       213 ~i~~~~~~~~r--------------------------~~~~~~~~~~~~~g~~~g~~l~~~l~~~--------~gw~~~f  258 (521)
                      ++.|..+++++                          ++..+.-.....+|.++.-++.-.+...        .+-|..+
T Consensus       150 ~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~  229 (477)
T PF11700_consen  150 YLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAF  229 (477)
T ss_pred             HhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHH
Confidence            99999998888                          8999998888889988887776655432        2247888


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCCCCCCC-chhHHHHHHHhhccccccCCCCCCCCCCchHHHHHhcchHHHHHHHHHHHH
Q 009978          259 VIFGLSGFLWVLVWLSATSSTPDRHPQI-SKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHS  337 (521)
Q Consensus       259 ~~~~~~~~i~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  337 (521)
                      .+.++..++..+..++..|+.|..++.. ...-.....               ++..+.+|+..|.|.+..+++..+++.
T Consensus       230 ~~~a~ww~vfsiP~~~~~~~~~~~~~~~~~~~~~~~g~---------------~~l~~t~k~~~~~~~~~~fLia~~l~~  294 (477)
T PF11700_consen  230 LIVALWWLVFSIPLFLWLPDRPGPRPLPSGSSYLRFGF---------------KRLWRTFKEIRKLRQLFLFLIAYFLYS  294 (477)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCCCCCCCcchhHHHHHH---------------HHHHHHHHHHHhChHHHHHHHHHHHHH
Confidence            8888888877777777777776532111 111101111               112235667778899999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhCCCcccchhHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHh
Q 009978          338 WGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLT  417 (521)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (521)
                      -+...+......|.++.+|++..+...+..+..+.+++|.++.+++.||+|.|..      +.+.........+.+..+.
T Consensus       295 dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~------~~l~~~l~~~~~i~~~g~~  368 (477)
T PF11700_consen  295 DGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTK------RTLLISLILWIIIPLYGLF  368 (477)
T ss_pred             HHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchh------HHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999998821      1111111111122222221


Q ss_pred             -------ccchhHHHHHHHHHHHHHHhhhhhhhHHHHHhhhc-cchhhHHhHHHHHHHHHHHHHHHHHHHHhhcccchHH
Q 009978          418 -------AAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQG  489 (521)
Q Consensus       418 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~  489 (521)
                             ...+.+.+++..++.+.+.+...+..-++..++.| ++.++.+|++.......+.+||.+.|.+.+.+|+.+.
T Consensus       369 G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~  448 (477)
T PF11700_consen  369 GFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRY  448 (477)
T ss_pred             HhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchh
Confidence                   12334444444444444444445555555555555 6889999999999999999999999999999998999


Q ss_pred             HHHHHHHHHHHHHHHHHHhccCccc
Q 009978          490 FLLLTSLLYFLSALFYIIFSTGERV  514 (521)
Q Consensus       490 ~~~~~~~~~~~~~~~~~~~~~~~~~  514 (521)
                      .+....++.+++.+++.....++.+
T Consensus       449 g~~~l~~lf~~gl~ll~~v~~~~g~  473 (477)
T PF11700_consen  449 GFLFLLVLFLIGLILLFFVDVEKGR  473 (477)
T ss_pred             HHHHHHHHHHHHHHHHhhccchhhh
Confidence            9999999998888888766554443

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK09669 putative symporter YagG; Provisional

Probab=99.92  E-value=5.2e-22  Score=198.43  Aligned_cols=335  Identities=15%  Similarity=0.089  Sum_probs=221.6

Q ss_pred             hhhhhhhhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhH----hcch-HHHHHHHHHHHHHHhhhhhccc----cchH
Q 009978          120 VAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDY----YGGK-IIMAWGVALWSLATFLTPWAAD----TSLL  190 (521)
Q Consensus       120 ~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr----~Grr-~~~~~~~~~~~~~~~l~~~~~~----~~~~  190 (521)
                      .....+.+++|+++.++|.+.++..+..++..|+.|+++||    +||| +.++.+.+..+++.++....+.    ..++
T Consensus        31 ~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~  110 (444)
T PRK09669         31 FLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKII  110 (444)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHH
Confidence            34566778899999999999999999999999999999999    6774 5566777777777665544421    2245


Q ss_pred             HHHHHHHHHhhhhcchhhHHHHHHHhcC-CchhhHHHHHHHHhhhhhhhHHHHHHHHHhhh-------ccCchhHHHHHH
Q 009978          191 ALLAMRAVVGLAEGVALPAMNNMVARWF-PQTERARAVAIAMGGFTSGNAIGLVLSPILMS-------QAGIFGPFVIFG  262 (521)
Q Consensus       191 ~l~~~r~l~G~g~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~-------~~gw~~~f~~~~  262 (521)
                      .+++..++.+++.........++.+|+. ++++|++..++......+|..+++.+...+..       ..+|+..+.+.+
T Consensus       111 ~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~  190 (444)
T PRK09669        111 YACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMG  190 (444)
T ss_pred             HHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHH
Confidence            6666677777777777778889999988 55789999899888888888887765544433       246888888888


Q ss_pred             HHHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHHhhccccccCCCCCCCCCCchHHHHHhcchHHHHHHHHHHHHHHHHH
Q 009978          263 LSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFV  342 (521)
Q Consensus       263 ~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  342 (521)
                      +++++..+..++..+|++++++                       +++.+..++++.++|||.++.+++..++.......
T Consensus       191 ii~~v~~~~~~~~~~e~~~~~~-----------------------~~~~~~~~~~~~~~~n~~~~~l~~~~~~~~~~~~~  247 (444)
T PRK09669        191 LLGVVLFFCCFFMTKERYTPEV-----------------------DNSSSVWKDLKLLLGNSQWRIMFIFNVVLLTAVVT  247 (444)
T ss_pred             HHHHHHHHHHhCCeEEecCCCC-----------------------cCCCCHHHHHHHHhCCchHHHHHHHHHHHHHHHHH
Confidence            7776665555554444322110                       01122345678889999999888877776666655


Q ss_pred             HHHHHHHHHHHHhCCCcccchhHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHhccchh
Q 009978          343 ILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSP  422 (521)
Q Consensus       343 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  422 (521)
                      .....+.|.+...+ ++...+.+.....+..+++.++.+++.||+++|+       ...............+.+...++.
T Consensus       248 ~~~~~~y~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~-------~~~~~~~~~~~~~~~~~~~~~~~~  319 (444)
T PRK09669        248 RGGATLYYVNYVLL-RPDLATLFLVTGMIAGLFGALLSERLLGKFDRVR-------AFKWTIVAFVILSALIFFIPPSNV  319 (444)
T ss_pred             HhhhhheeeeeecC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHH-------HHHHHHHHHHHHHHHHHHhCcchH
Confidence            55544444444333 2233344455556777788889999999998882       222222111111111122222344


Q ss_pred             HHHHHHHHHHHHHHhhhhhhhHHHHHhhhc--------cchhhHHhHHHHHHHHHHHHHHHHHHHHhhccc
Q 009978          423 VMASAWLTLAIGMKSFSHSGFLVNLQEIAP--------QYSGVLHGISNTAGTFAAILGTVGAGFFVELVG  485 (521)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g  485 (521)
                      +..++..++.....+...+...+...+..+        +..|..+|..+....+|..+|+.+.|.+.+..|
T Consensus       320 ~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~G  390 (444)
T PRK09669        320 WLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVD  390 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            333333333333334445556666666653        235778899999999999999999999998776

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.91  E-value=1.5e-20  Score=185.02  Aligned_cols=393  Identities=12%  Similarity=0.085  Sum_probs=233.0

Q ss_pred             HHHHHHHHHHHhhhhhhhhhhhhhh-hhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHh-cchHHHHHHHHHHHHHH
Q 009978          101 VSMLALALALCNADRVVMSVAIVPL-SLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYY-GGKIIMAWGVALWSLAT  178 (521)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~-Grr~~~~~~~~~~~~~~  178 (521)
                      +..++...+...+..+.+...+|.+ .+++|.++.+.+.+.+.+.....++++++|+++||+ ||||+++++.++..++.
T Consensus        11 l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~   90 (493)
T PRK15462         11 IYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGH   90 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHH
Confidence            4444445555555555565565655 566899999999999999999999999999999999 99999999999999998


Q ss_pred             hhhhhccccchHHHHHHHHHHhhhhcchhhHHHHHHHhcCCch--hhHHHHHHHHhhhhhhhHHHHHHHHHhhhccCchh
Q 009978          179 FLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQT--ERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFG  256 (521)
Q Consensus       179 ~l~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gw~~  256 (521)
                      ++++... .+...++++..+.++|.|...+...++++|.+|++  +|..++++.....++|..++|.+.+++.+.+||++
T Consensus        91 lll~~~~-~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~  169 (493)
T PRK15462         91 VVLGASE-IHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAM  169 (493)
T ss_pred             HHHHHhh-cchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHH
Confidence            7766531 12233444444555666777777889999999875  68999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCCC---CCCCchhHHHH----------------HHHh-hcccc--------------
Q 009978          257 PFVIFGLSGFLWVLVWLSATSSTPDR---HPQISKYELEY----------------ILRE-KQKPL--------------  302 (521)
Q Consensus       257 ~f~~~~~~~~i~~i~~~~~~~~~~~~---~~~~~~~~~~~----------------~~~~-~~~~~--------------  302 (521)
                      .|.+.++..++..+..+...+..++.   ++...+++...                .... .....              
T Consensus       170 ~F~iaaigm~l~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (493)
T PRK15462        170 GFGLAAVGMIAGLVIFLCGNRHFTHTRGVNKKVLRATNFLLPNWGWLLVLLVATPALITVLFWKEWSVYALIVATIIGLG  249 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99987765444443333222111110   01111111000                0000 00000              


Q ss_pred             -ccCCCCCCCCCCchHHHHHhcc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CCCcccchhHhHHHHHHHH
Q 009978          303 -LMGNKHKPATVIPPFRRLLSKM--PTWSIIVANAMHSWGFFVILSWMPIYFNFVY-----HIDLRQASWFSAVPWSVMA  374 (521)
Q Consensus       303 -~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----g~~~~~~~~~~~~~~~~~~  374 (521)
                       .......+ .  .   +.-|+|  .+..+.+...+++..+....+-+..|.++..     |++ -..+++.++..+..+
T Consensus       250 ~~~~~~~~~-~--~---~~er~r~~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~g~~-ip~~~~qslNp~~ii  322 (493)
T PRK15462        250 VLAKIYRKA-E--N---QKQRKELGLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMFGYT-VPTAMFQSINAFAVM  322 (493)
T ss_pred             HHHHHHHhc-C--C---HHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchhccee-eCHHHHHhHhHHHHH
Confidence             00000000 0  0   000112  1223333344444444444555566665532     222 235667788888888


Q ss_pred             HHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHhc---c----chhHHHHHHHHHHHHHHhhhhhhhHHHH
Q 009978          375 FTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTA---A----KSPVMASAWLTLAIGMKSFSHSGFLVNL  447 (521)
Q Consensus       375 i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~  447 (521)
                      +.+++..++-.|..+++.......|......+...+...+.+..   .    .+.++.+...++......+..|...+..
T Consensus       323 ~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t~gEl~~sPvgls~~  402 (493)
T PRK15462        323 LCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMGFAELFIDPVAMSQI  402 (493)
T ss_pred             HHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHHChHHHHHH
Confidence            88888888888875543333333444444433333333332211   1    1233333333333334445556666777


Q ss_pred             Hhhhc-cchhhHHhHHHHHH-HHHHHHHHHHHHHHhhc-----------ccchHHHHHHHHHHHHHH
Q 009978          448 QEIAP-QYSGVLHGISNTAG-TFAAILGTVGAGFFVEL-----------VGSFQGFLLLTSLLYFLS  501 (521)
Q Consensus       448 ~~~~~-~~~g~~~g~~~~~~-~~g~~~~~~~~g~l~~~-----------~g~~~~~~~~~~~~~~~~  501 (521)
                      .++.| +.+|..+|.+.... .+|..++..+.+...+.           ...|...|...+...+++
T Consensus       403 ~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~  469 (493)
T PRK15462        403 TRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQTSQASFDASGAINYSINAYIEVFDQITWGALAC  469 (493)
T ss_pred             HHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCccccccchhhhHHHHHHHHHHHHHHH
Confidence            77777 58999999986643 56666666666555311           113556777766655544

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.91  E-value=5.8e-22  Score=184.10  Aligned_cols=392  Identities=15%  Similarity=0.150  Sum_probs=285.2

Q ss_pred             ccccchhHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHH
Q 009978           91 EFITSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWG  170 (521)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~  170 (521)
                      .+..++||.+++..++..+.+.+.+..+++...+...-+| +....-|+.-+|++.+....+++-|+.||+|-|...+++
T Consensus        37 ~rVy~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llg  115 (480)
T KOG2563|consen   37 HRVYPRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLG  115 (480)
T ss_pred             cccchhHhHHHHHHHHHHhcCcchheeehhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHH
Confidence            3456788999999999999999999899998888888888 777888999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhhccc----cchH--HHHHHHHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHH
Q 009978          171 VALWSLATFLTPWAAD----TSLL--ALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVL  244 (521)
Q Consensus       171 ~~~~~~~~~l~~~~~~----~~~~--~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l  244 (521)
                      ....++|..+-..+..    +.++  ....+..+.+.+..........+..-||++++|..+..+-..+..+|.++|.++
T Consensus       116 t~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~ll  195 (480)
T KOG2563|consen  116 TVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLL  195 (480)
T ss_pred             HHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhc
Confidence            9999999988655532    3455  677888888888888777777888899999999999999999999999999999


Q ss_pred             HHHhhhcc------Cchh--HHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHHhhccccccCCCCCCCCCCch
Q 009978          245 SPILMSQA------GIFG--PFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPP  316 (521)
Q Consensus       245 ~~~l~~~~------gw~~--~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (521)
                      ...+..+-      .|..  .|+..++++.+.+++..+..+++|+.++......                 ..+.+..++
T Consensus       196 ppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPps~s~~~-----------------~~~~~f~~s  258 (480)
T KOG2563|consen  196 PPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTPPSASQAA-----------------LQDASFPKS  258 (480)
T ss_pred             cceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhHhh-----------------hhcCcHHHH
Confidence            88887643      3544  4555556555555666666666665544321111                 012336678


Q ss_pred             HHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcch
Q 009978          317 FRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTL  396 (521)
Q Consensus       317 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~  396 (521)
                      +++.++|+++....+++......+++..+.+..-+.. .|++...+|+......+++++++.+.|.+.||.++.+.    
T Consensus       259 i~~~~~n~~F~il~~~ygi~~g~F~~l~~~l~~~l~~-sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~----  333 (480)
T KOG2563|consen  259 IKSCFKNRQFIILAICYGIGLGLFNSLSTLLNLALCP-SGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKL----  333 (480)
T ss_pred             HHHHHcCccHHHHHHHHhhhHHHHHHHHHHhhhcccc-ccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHH----
Confidence            8999999999999999888888888887777655555 57888889999999999999999999999999887632    


Q ss_pred             hHHHHHHHHHHHHHHH-HHHHh----ccchhHHHHHHHHHHHHHHhhhhhhhHHHHHhhhccchhhHHhHHHHHHHHHHH
Q 009978          397 TRKILQSIGFIAPGIA-LIGLT----AAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGISNTAGTFAAI  471 (521)
Q Consensus       397 ~~~~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~  471 (521)
                         ... +......+. +.+..    ............+++.+..+..+...-...+..+|..-++..|+.+..+++-++
T Consensus       334 ---~~~-v~~~~~~v~~~~l~~~t~~~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~  409 (480)
T KOG2563|consen  334 ---TTL-VLYLFALVGTLMLLTCTLFLGDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGV  409 (480)
T ss_pred             ---HHH-HHHHHHHHHHHHHHHhhccCCceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHH
Confidence               111 111111111 11111    122333333344444444444444444556667788888999999999999999


Q ss_pred             HHHHHHHHHhhcccc---hHHHHHHHHHHHHHHHHHHHHhc
Q 009978          472 LGTVGAGFFVELVGS---FQGFLLLTSLLYFLSALFYIIFS  509 (521)
Q Consensus       472 ~~~~~~g~l~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~  509 (521)
                      +-..+.+...+..+.   +...-+.....++++.++..+++
T Consensus       410 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~r  450 (480)
T KOG2563|consen  410 ILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVAFFR  450 (480)
T ss_pred             HHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHhhhh
Confidence            999999999887651   22223333344444444444443

>TIGR00788 fbt folate/biopterin transporter

Probab=99.90  E-value=5.5e-22  Score=197.97  Aligned_cols=367  Identities=12%  Similarity=0.008  Sum_probs=233.0

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhc-----chHHHHHHHHH
Q 009978           99 KVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYG-----GKIIMAWGVAL  173 (521)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~G-----rr~~~~~~~~~  173 (521)
                      ..+.++...++..+..........+.+.+++|+++++++...++..++..+-.+ +|+++||++     ||+.++++.++
T Consensus        26 ~~~~~~~~~y~~qGl~~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l  104 (468)
T TIGR00788        26 VVLAIGLQVLFVKGIAGLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLL  104 (468)
T ss_pred             hHHHHHHHHHHHhhHHHHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHH
Confidence            345555666777777633444555666667999999999999999999998555 999999997     77777877766


Q ss_pred             HH-HHHhhhhhccccchHH-HHHHHHHHhhhhcchhhHHHHHHHhcCCchhhHHH---HHHHHhhhhhhhHHHHHHHHHh
Q 009978          174 WS-LATFLTPWAADTSLLA-LLAMRAVVGLAEGVALPAMNNMVARWFPQTERARA---VAIAMGGFTSGNAIGLVLSPIL  248 (521)
Q Consensus       174 ~~-~~~~l~~~~~~~~~~~-l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~---~~~~~~~~~~g~~~g~~l~~~l  248 (521)
                      .. +.....+..  ++... ..+..++.+++.+...++..++..|..+ +++...   .+......++|.++|+.+++.+
T Consensus       105 ~~~~~~~~l~~~--~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l  181 (468)
T TIGR00788       105 GSAILYGLLPGK--VSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPL  181 (468)
T ss_pred             HHHHHHHhcccc--cchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHH
Confidence            63 443334433  44443 4447899999999999999999999998 555443   3333444558999999999999


Q ss_pred             hhccCchhHHHHHHHHHHHHHHHHHHhcCCCCC-CCCCCchhHHHHHHHhhccccccCCCCCCCCCCchHHHHHhcchHH
Q 009978          249 MSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPD-RHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTW  327 (521)
Q Consensus       249 ~~~~gw~~~f~~~~~~~~i~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (521)
                      .+.++|+..|++.+++.++..+.. ...+|++. ..+...+++.........     ...+...+.....++.+++|.++
T Consensus       182 ~~~~~~~~~f~~~a~l~ll~~~~~-~~~~E~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~l~~~~i~  255 (468)
T TIGR00788       182 LDKTLTRILFLITAALLLLQLFVS-NLSKERRAFVRPRIGTYLEMNMALLTL-----GVLANVKVQILGLRGAIQLLEIA  255 (468)
T ss_pred             HHhcCcchHHHHHHHHHHHHHHHH-Hhcccccccccccccccchhhhhhhhh-----hHHHHHHHHHHHHHHHHhcHHHH
Confidence            999999999999988877764433 34455431 111100000000000000     00000001123455667888888


Q ss_pred             HHHHHHHH-HHHHHHHHHHHHHHHHHHHhCCCcccchhHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHH
Q 009978          328 SIIVANAM-HSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGF  406 (521)
Q Consensus       328 ~~~l~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~  406 (521)
                      ...+..++ +.........+. .+..+..|+++.+.|......+++.+++..+.+++.+|++.|         .++.++.
T Consensus       256 ~~l~fifl~~~~~~~~~~~~f-~~~~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r---------~~l~~~~  325 (468)
T TIGR00788       256 KPLIFIFLSYANLPGASGSVF-CATTQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYR---------LLFGVTT  325 (468)
T ss_pred             HHHHHHHHHHhhcCCCCceeE-EEEcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHH---------HHHHHHH
Confidence            76666665 322222111111 122234899999999999999998898988888888887766         3334444


Q ss_pred             HHHHHHHHHHh-c---------cchhHHHHHHHHHHHHHHhhhhhhhHHHHHhhhc-cchhhHHhHHHHHHHHHHHHHHH
Q 009978          407 IAPGIALIGLT-A---------AKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTV  475 (521)
Q Consensus       407 ~~~~~~~~~~~-~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~  475 (521)
                      ++.++..+... .         .+..+......++.....+........++.+..| +.+|+.+++.+++.++|..+++.
T Consensus       326 ~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~  405 (468)
T TIGR00788       326 LLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGF  405 (468)
T ss_pred             HHHHHHHhCceeeeeccccccCCCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHH
Confidence            43333332211 0         0112222222223333333444444555555655 68999999999999999999999


Q ss_pred             HHHHHhhccc
Q 009978          476 GAGFFVELVG  485 (521)
Q Consensus       476 ~~g~l~~~~g  485 (521)
                      ++|.+.+..|
T Consensus       406 ~gg~l~~~~g  415 (468)
T TIGR00788       406 LGVLLMETIG  415 (468)
T ss_pred             HHHHHHHHcC
Confidence            9999999876

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>TIGR01272 gluP glucose/galactose transporter

Probab=99.90  E-value=6.9e-21  Score=179.53  Aligned_cols=277  Identities=13%  Similarity=0.061  Sum_probs=198.3

Q ss_pred             cchHHHHHHHHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHhhhc---------------
Q 009978          187 TSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQ---------------  251 (521)
Q Consensus       187 ~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~---------------  251 (521)
                      .+++.++++-++.|.|.+...+..+.++++..++|++++.+++.+..+++|..+||.+++.+...               
T Consensus         8 ~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~~~   87 (310)
T TIGR01272         8 RYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATANAE   87 (310)
T ss_pred             hHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhhHH
Confidence            78999999999999999999999999999999999999999999999999999999999988732               


Q ss_pred             -cCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHHhhccccccCCCCCCCCCCchHHHHHhcchHHHHH
Q 009978          252 -AGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSII  330 (521)
Q Consensus       252 -~gw~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (521)
                       .+|+++|++.+.+.++..+++.+..  .|+.+++.+++               ..+  ++.  ...++.+++|.++...
T Consensus        88 ~~~~~~~yl~ia~~~~~~~i~~~~~~--~p~~~~~~~~~---------------~~~--~~~--~~~~~~~~~~~~~l~~  146 (310)
T TIGR01272        88 AAKVHTPYLLLAGALAVLAIIFAFLP--LPELQEADVAR---------------VSS--GDT--TQKTSAFQFTHLVLGA  146 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcc--CCCCCcccccc---------------ccc--ccc--cchhhHHhhHHHHHHH
Confidence             3699999977776555544443321  11111100000               000  000  1123467788899888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH--hCCCcccchhHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHH
Q 009978          331 VANAMHSWGFFVILSWMPIYFNFV--YHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIA  408 (521)
Q Consensus       331 l~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~  408 (521)
                      +..+++.....++..|.+.|+.+.  +|+++.+.+...+....+.++|+++.+++.||+++++         .+..+..+
T Consensus       147 ~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~---------~l~~~~~l  217 (310)
T TIGR01272       147 LGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGR---------YLAFNAFL  217 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHH---------HHHHHHHH
Confidence            888888889999999999999864  5899999999999999999999999999999999872         22222222


Q ss_pred             HHHHHHHHhccchhHHHHHHHHHHHHHHhhhhhhhHHHHHhhhccchhhHHhHHHHHHHHHHHHHHHHHHHHhhcccchH
Q 009978          409 PGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQ  488 (521)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~  488 (521)
                      ..+..+.....+.....+...++ +.+.+...|.......+..|++.+++.++. .+..+|++++|.+.|.+.|..| .+
T Consensus       218 ~~~~~~l~~~~~~~~~~~~~~l~-g~~~s~i~P~~~s~a~~~~~~~~~~asai~-~~~~~Gg~i~P~l~G~lad~~g-~~  294 (310)
T TIGR01272       218 AVLLSIGAALTHGYVAMWFVLAL-GLFNSIMFPTIFSLALNALGRHTSQGSGIL-CLAIVGGAIVPLLQGSLADCLG-IQ  294 (310)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhhhhhhhhHHHH-HHHHhcchHHHHHHHHHHHhcc-ch
Confidence            22222222222233222222333 344445556656556666666677777775 6778999999999999999887 77


Q ss_pred             HHHHHHHH
Q 009978          489 GFLLLTSL  496 (521)
Q Consensus       489 ~~~~~~~~  496 (521)
                      ..+++...
T Consensus       295 ~a~~v~~~  302 (310)
T TIGR01272       295 LAFALPVP  302 (310)
T ss_pred             HHHHHHHH
Confidence            77664433

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.90  E-value=2.9e-28  Score=244.78  Aligned_cols=398  Identities=18%  Similarity=0.189  Sum_probs=254.8

Q ss_pred             HHHHHHHhhhhhhhhhhhhhhh--hhhcC---------CcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHH
Q 009978          105 ALALALCNADRVVMSVAIVPLS--LAHGW---------SRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVAL  173 (521)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~---------s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~  173 (521)
                      .++.+..+++....+...+...  ..++.         +..+.+++.+...+|..+|++++|+++||+|||+.+.++.++
T Consensus         6 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~   85 (451)
T PF00083_consen    6 SLGGFLFGYDLGLIGSFASLLGFLQFFGWSSSESSCEKSSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALL   85 (451)
T ss_pred             HHHHHHHHHHHHHHhhHHhhhhhhhccccccccccccchHHHHHHHHHHHHhhhcccccccccccccccccccccccccc
Confidence            3444666666666665555444  22222         223568999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhhcccc---chHHHHHHHHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHhhh
Q 009978          174 WSLATFLTPWAADT---SLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMS  250 (521)
Q Consensus       174 ~~~~~~l~~~~~~~---~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~  250 (521)
                      ..++.++.+++  +   +++.+.++|++.|++.|...+....++.|..|+++|++..++.+....+|.+++..++..+..
T Consensus        86 ~~i~~~~~~~~--~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~  163 (451)
T PF00083_consen   86 MIIGSILIAFA--PSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSY  163 (451)
T ss_pred             ccccccccccc--ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            99999999999  7   999999999999999999999999999999999999999999999999999998888766544


Q ss_pred             cc---CchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCc-hhHHHHHHHhhccc------cccCC--CCCCCCCCchHH
Q 009978          251 QA---GIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQIS-KYELEYILREKQKP------LLMGN--KHKPATVIPPFR  318 (521)
Q Consensus       251 ~~---gw~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~------~~~~~--~~~~~~~~~~~~  318 (521)
                      ..   +||..+++.++++++..+.. ...||+|+...... .+|.++..++.++.      .....  .++.++....++
T Consensus       164 ~~~~~~Wr~~~~~~~~~~l~~~~~~-~~~pESP~wL~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (451)
T PF00083_consen  164 YSDNWGWRILLIFGAIPSLLVLLLR-FFLPESPRWLLSKGRDEEAEKVLRKLRGKEIEDEEIEEIKAEKKESQESKASWR  242 (451)
T ss_pred             ccccccccccccccccccccccccc-cccccccceecccccccccccccccccccccccccccccccccccccccceeee
Confidence            33   49999999888877655444 56788886532221 12222222221100      00000  001111113455


Q ss_pred             HHHhcch----HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCCcccchhHhHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 009978          319 RLLSKMP----TWSIIVANAMH-SWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTS  393 (521)
Q Consensus       319 ~~~~~~~----~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~  393 (521)
                      ++++++.    +.......... ..+......+.+.++++ .+.+..  -.......+...++.++..++.||+|||+..
T Consensus       243 ~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~  319 (451)
T PF00083_consen  243 DLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFEN-AGISNS--FLATLILGLVNFLGTLLAIFLIDRFGRRKLL  319 (451)
T ss_pred             eccccccccccccccccccccccccccccccccccccccc-cccccc--ccccccccccccccccccccccccccccccc
Confidence            6666543    22222222222 22334455556666655 576665  2223344455666777778999999999432


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHh-----ccch----hHHHHHHHHHHHHHHh-hhhhhhHHHHHhhhc-cchhhHHhHH
Q 009978          394 VTLTRKILQSIGFIAPGIALIGLT-----AAKS----PVMASAWLTLAIGMKS-FSHSGFLVNLQEIAP-QYSGVLHGIS  462 (521)
Q Consensus       394 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~g~~~g~~  462 (521)
                               ..+....++....+.     ..+.    ....+....+...... ...+....+..|.+| +.|+++.|+.
T Consensus       320 ---------i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~  390 (451)
T PF00083_consen  320 ---------IIGLLLMAICSLILGIIFFLGVSSSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLS  390 (451)
T ss_pred             ---------ccccccccccccccccccccccccccccccccceeeeeccccccccccccccccccccccccccccccccc
Confidence                     222222222222221     1121    1122222222222222 233444567788888 6999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHH-HHHHHhccCccccccc
Q 009978          463 NTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSA-LFYIIFSTGERVNFDE  518 (521)
Q Consensus       463 ~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  518 (521)
                      ...+++++++++.+...+.+..+ ....+.+.+++.+++. +.+.+.++.++++.+|
T Consensus       391 ~~~~~i~~~i~~~~~~~~~~~~~-~~~~~~i~~~~~~i~~i~~~~~lpET~g~~l~e  446 (451)
T PF00083_consen  391 YAVGRIGGFIIPFLFPYLFNNLG-GWGVFLIFAGVCLIAIIFVYFFLPETKGKTLEE  446 (451)
T ss_pred             ccccccccccccccccccccccc-ccccchhhHHHHHHHHhheeEEEeeCCCCCHHH
Confidence            99999999999999998888776 3444555444444444 4445566666665544

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PRK09848 glucuronide transporter; Provisional

Probab=99.89  E-value=2.2e-20  Score=187.07  Aligned_cols=346  Identities=11%  Similarity=0.033  Sum_probs=209.5

Q ss_pred             HHHHHhhhhhhhhh-hhhhhhhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHh----cchHHH-HHHHHHHHHHHhh
Q 009978          107 ALALCNADRVVMSV-AIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYY----GGKIIM-AWGVALWSLATFL  180 (521)
Q Consensus       107 ~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~----Grr~~~-~~~~~~~~~~~~l  180 (521)
                      ..+..........+ ..+++.+.+|+++.++|.+.++..+..++..++.|+++||.    ||||.. .++.+...+..++
T Consensus        16 g~~~~~~~~~~~~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~   95 (448)
T PRK09848         16 GDVANNFAFAMGALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVL   95 (448)
T ss_pred             chHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHH
Confidence            33333333333333 34566677899999999999999999999999999999996    777644 5555544444433


Q ss_pred             hhhcc---cc--chHHHHHHHHHHhhhhcchhhHHHHHHHhcCC-chhhHHHHHHHHhhhh-----hhhHHHHHHHHHhh
Q 009978          181 TPWAA---DT--SLLALLAMRAVVGLAEGVALPAMNNMVARWFP-QTERARAVAIAMGGFT-----SGNAIGLVLSPILM  249 (521)
Q Consensus       181 ~~~~~---~~--~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~-----~g~~~g~~l~~~l~  249 (521)
                      ....+   .+  ..+.+++..++.+++.+...+...++..+..+ +++|.+..++...+.+     ++..++|.+++...
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~g  175 (448)
T PRK09848         96 VFWVPTDWSHSSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNSSP  175 (448)
T ss_pred             HHhCcCCCCcchHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            22111   01  23334555667788888888777887777664 4678887776654433     44555555554331


Q ss_pred             hcc--CchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHHhhccccccCCCCCCCCCCchHHHHHhcchHH
Q 009978          250 SQA--GIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTW  327 (521)
Q Consensus       250 ~~~--gw~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (521)
                      ...  +|.....+.+++.++..++.....+|+++++                        .++....+.++.+++||.++
T Consensus       176 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~e~~~~~------------------------~~~~~~~~~~~~l~~n~~f~  231 (448)
T PRK09848        176 EEMVSVYHFWTIVLAIAGMVLYFICFKSTRENVVRI------------------------VAQPSLKISLQTLKRNRPLF  231 (448)
T ss_pred             CchhhhHHHHHHHHHHHHHHHHHHHHcCcEeccCCC------------------------ccCCCHHHHHHHHhCCchHH
Confidence            111  1211112222222222222222233322111                        01112334577899999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHH
Q 009978          328 SIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFI  407 (521)
Q Consensus       328 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~  407 (521)
                      ...+..++............|.|+++.+|.++...++......++.+++.++.+++.||+++|         .....+..
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~---------~~~~~g~~  302 (448)
T PRK09848        232 MLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKK---------NTFLIGAL  302 (448)
T ss_pred             HHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH---------HHHHHHHH
Confidence            998888888888888888888888887887766555544444566778889999999999987         22233333


Q ss_pred             HHHHHHHHHhc--cchhHHHHHHHHHHHHHHhhhhhhhHHHHHhhhc--------cchhhHHhHHHHHHHHHHHHHHHHH
Q 009978          408 APGIALIGLTA--AKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP--------QYSGVLHGISNTAGTFAAILGTVGA  477 (521)
Q Consensus       408 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~g~~~g~~~~~~~~g~~~~~~~~  477 (521)
                      +..+..+.+..  ..+.+......++.....+...+...+...+..+        ++.|..+|+.+....+|..+++.+.
T Consensus       303 ~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~  382 (448)
T PRK09848        303 LGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIP  382 (448)
T ss_pred             HHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHH
Confidence            33322222222  2233333222222222233333444555555544        2359999999999999999999999


Q ss_pred             HHHhhccc
Q 009978          478 GFFVELVG  485 (521)
Q Consensus       478 g~l~~~~g  485 (521)
                      |.+.+..|
T Consensus       383 g~~l~~~G  390 (448)
T PRK09848        383 AFILGLSG  390 (448)
T ss_pred             HHHHHHcC
Confidence            99987665

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.89  E-value=2e-20  Score=188.06  Aligned_cols=354  Identities=11%  Similarity=-0.008  Sum_probs=227.6

Q ss_pred             HHHHHHhhhhhhhhhh-hhhhhhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHh----Hhcc-hHHHHHHHHHHHHHHh
Q 009978          106 LALALCNADRVVMSVA-IVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVD----YYGG-KIIMAWGVALWSLATF  179 (521)
Q Consensus       106 ~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~d----r~Gr-r~~~~~~~~~~~~~~~  179 (521)
                      ++.+...+....+... ...+.+.+|+++.++|.+..+..+.-++..|+.|+++|    |+|| |+.++++.+..+++..
T Consensus        13 ~g~~~~~~~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~   92 (473)
T PRK10429         13 FGAFGKDFAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLF   92 (473)
T ss_pred             cchhHHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHH
Confidence            3333344444444444 44556667999999999999999999999999999999    5698 5667778888777766


Q ss_pred             hhhhccc--c--chHHHHHHHHHHhhhhcchhhHHHHHHHhcC-CchhhHHHHHHHHhhhhhhhHHHHHHHHHhhhc---
Q 009978          180 LTPWAAD--T--SLLALLAMRAVVGLAEGVALPAMNNMVARWF-PQTERARAVAIAMGGFTSGNAIGLVLSPILMSQ---  251 (521)
Q Consensus       180 l~~~~~~--~--~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~---  251 (521)
                      ++...+.  +  .+..+++..++.+++.....+...++..|.. ++++|.+..++...+.++|..+.+.+...+.+.   
T Consensus        93 llf~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~  172 (473)
T PRK10429         93 LLFSAHLFEGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGG  172 (473)
T ss_pred             HHHcCCCCCccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            6544311  1  1345566667778888888888999999998 688999999997777777766666555443222   


Q ss_pred             ----cCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHHhhccccccCCCCCCCCCCchHHHHHhcchHH
Q 009978          252 ----AGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTW  327 (521)
Q Consensus       252 ----~gw~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (521)
                          .+|+....+.+++.++..+..++..+|.++.....                  .+++++.+.++.++.+++||.++
T Consensus       173 ~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~e~~~~~~~~------------------~~~~~~~~~~~~~~~~~~n~~~~  234 (473)
T PRK10429        173 GDRGFGFQMFTLVLIAFFIVSTIITLRNVHEVYSSDNQV------------------SAEGSHLTLKDIVALIYKNDQLS  234 (473)
T ss_pred             CchhhhHHHHHHHHHHHHHHHHHHHHcCceecCCccccc------------------cccccCCCHHHHHHHHhcCHHHH
Confidence                24666666666665555545544445543211100                  00111223345566777899988


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHH
Q 009978          328 SIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFI  407 (521)
Q Consensus       328 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~  407 (521)
                      .+++..++..........+.+.|.+...+ +....+.+.....++.+++.++.+++.||+|+|+       .........
T Consensus       235 ~ll~~~~~~~~~~~~~~~~~~y~~~y~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~-------~~~~~~~~~  306 (473)
T PRK10429        235 CLLGMALAYNIASNIINGFAIYYFTYVIG-DADLFPYYLSYAGAANLVTLILFPRLVKSLSRRI-------LWAGASIFP  306 (473)
T ss_pred             HHHHHHHHHHHHHHHHhhheeeEEEEECC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHH-------HHHHHHHHH
Confidence            88888888877777766666666555333 4455666666667888899999999999999882       222222211


Q ss_pred             HHHHHHHHH---hccchhHHHHHHHHHHHHHHhhhhhhhHHHHHhhhc--------cchhhHHhHHHHHHHHHHHHHHHH
Q 009978          408 APGIALIGL---TAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP--------QYSGVLHGISNTAGTFAAILGTVG  476 (521)
Q Consensus       408 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~g~~~g~~~~~~~~g~~~~~~~  476 (521)
                      +.+...+..   ...++.+..++..++.....+.......++..|..+        +..|..+|.......++..+++.+
T Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i  386 (473)
T PRK10429        307 VLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFF  386 (473)
T ss_pred             HHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHH
Confidence            111111111   112333333333333323333344445555666543        235669999999999999999999


Q ss_pred             HHHHhhccc
Q 009978          477 AGFFVELVG  485 (521)
Q Consensus       477 ~g~l~~~~g  485 (521)
                      .|.+.+..|
T Consensus       387 ~g~~l~~~G  395 (473)
T PRK10429        387 IGVVLGLIG  395 (473)
T ss_pred             HHHHHHHcC
Confidence            999998766

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.89  E-value=7.3e-21  Score=189.24  Aligned_cols=337  Identities=18%  Similarity=0.185  Sum_probs=248.1

Q ss_pred             hhhhhhhhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHh----HhcchH-HHHHHHHHHHHHHhhhhhc-c-c----cc
Q 009978          120 VAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVD----YYGGKI-IMAWGVALWSLATFLTPWA-A-D----TS  188 (521)
Q Consensus       120 ~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~d----r~Grr~-~~~~~~~~~~~~~~l~~~~-~-~----~~  188 (521)
                      ...+.+.+.+|+++..+|++..+..+..++..|+.|.++|    |+|||| .++++.+..+++.+++... + .    ..
T Consensus        23 ~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~  102 (428)
T PF13347_consen   23 YLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAK  102 (428)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhH
Confidence            4456667778999999999999999999999999999999    789766 5667888888887776654 2 0    12


Q ss_pred             hHHHHHHHHHHhhhhcchhhHHHHHHHhcCC-chhhHHHHHHHHhhhhhhhHHHHHHHHHhhhcc-------CchhHHHH
Q 009978          189 LLALLAMRAVVGLAEGVALPAMNNMVARWFP-QTERARAVAIAMGGFTSGNAIGLVLSPILMSQA-------GIFGPFVI  260 (521)
Q Consensus       189 ~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~-------gw~~~f~~  260 (521)
                      ...+.+..++..++.........++..|..+ +++|.+..+....+..+|.++...+.+.+.+..       +|++..++
T Consensus       103 ~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v  182 (428)
T PF13347_consen  103 LVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALV  182 (428)
T ss_pred             HHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHH
Confidence            3345777777789988889999999999997 468999999999988888876666666655322       58888888


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHHhhccccccCCCCCCCCCCchHHHHHhcchHHHHHHHHHHHHHHH
Q 009978          261 FGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGF  340 (521)
Q Consensus       261 ~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  340 (521)
                      .+++.++..++..+..+|.+++.                     ++++++.+.++.++.+++||.++.+.+..++.....
T Consensus       183 ~~iv~~v~~~i~~~~~ke~~~~~---------------------~~~~~~~~~~~~~~~~~~nr~~~~l~~~~~~~~~~~  241 (428)
T PF13347_consen  183 LAIVGLVFFLITFFFVKERSVEV---------------------TEQEKKISLRDSLRSLFRNRPFRILLLAFFLQWLAF  241 (428)
T ss_pred             HHHHHHHHhhhhhheeeeccccc---------------------cccccccccccchhhhcccchHHHHHHHHHHHHhhh
Confidence            88888887777777766621111                     222234455667889999999999999999998888


Q ss_pred             HHHHHHHHHHHHHHhCCCcccchhHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHhccc
Q 009978          341 FVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAK  420 (521)
Q Consensus       341 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  420 (521)
                      .......+.|.++..|.+ ...+.+.....++.+++.++.+++.||+|+|+.       ..........+...+.+...+
T Consensus       242 ~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~-------~~~~~~~~~~~~~~~~~~~~~  313 (428)
T PF13347_consen  242 ALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKV-------YIIGLLLAALGFLLLFFLGPG  313 (428)
T ss_pred             hhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccceee-------hhhhHHHHHHHHHHHHHHHhh
Confidence            888888899998887776 566777778888999999999999999999842       222222222222222222213


Q ss_pred             hhHHHHHHHHHHHHHHhhhhhhhHHHHHhhhc--------cchhhHHhHHHHHHHHHHHHHHHHHHHHhhccc
Q 009978          421 SPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP--------QYSGVLHGISNTAGTFAAILGTVGAGFFVELVG  485 (521)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g  485 (521)
                      +.+...+..++.....+.......+...|+.+        +..|..+|+.+....++..+++.+.|.+.+..|
T Consensus       314 ~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~G  386 (428)
T PF13347_consen  314 SPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALVG  386 (428)
T ss_pred             hHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhC
Confidence            44444444444444444444555555555554        346999999999999999999999999988765

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.87  E-value=1.9e-19  Score=166.74  Aligned_cols=355  Identities=14%  Similarity=0.088  Sum_probs=256.6

Q ss_pred             cchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHH-HHHHHHHHHHHHhhhhhccc-cchHHHHHHHHHHhhhhcchhhHH
Q 009978          133 RSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKII-MAWGVALWSLATFLTPWAAD-TSLLALLAMRAVVGLAEGVALPAM  210 (521)
Q Consensus       133 ~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~-~~~~~~~~~~~~~l~~~~~~-~~~~~l~~~r~l~G~g~~~~~~~~  210 (521)
                      .+..|...++..+..++.+|+.|.++|+.|+||. +-....+..++.+++.+.++ ..++..++...+..++.....+..
T Consensus        57 ~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vfy  136 (438)
T COG2270          57 TAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVFY  136 (438)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhheeh
Confidence            3556788889999999999999999999997765 44555556666666777643 234555667788888888889999


Q ss_pred             HHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHh---h---------------hccCchhHHHHHHHHHHHHHHHH
Q 009978          211 NNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPIL---M---------------SQAGIFGPFVIFGLSGFLWVLVW  272 (521)
Q Consensus       211 ~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l---~---------------~~~gw~~~f~~~~~~~~i~~i~~  272 (521)
                      ++++.+..++++-++..++-.....+|+.+.-++.-..   .               +...-|..+.+.++-.++..+..
T Consensus       137 ds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iPm  216 (438)
T COG2270         137 DSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALPM  216 (438)
T ss_pred             hhHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhHH
Confidence            99999999998888888887777777777665553211   1               22246778888888888877777


Q ss_pred             HHhcCCCCCCCCCCchhHHHHHHHhhccccccCCCCCCCCCCchHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009978          273 LSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFN  352 (521)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  352 (521)
                      ++..++.++..... .......               -++.++.+++..+++.+..+++..+++.-+.+........|..
T Consensus       217 ~~~v~~~~~~~~~~-~~~l~~g---------------~k~L~~t~k~i~~~~~i~~FLiA~~~~~DGv~til~~~~~fg~  280 (438)
T COG2270         217 ILNVHDAEKISSPP-PTALRNG---------------FKELKSTFKEIRGRKNLVLFLIARFFYIDGVNTILAMGGVFGA  280 (438)
T ss_pred             Hhcccccccccccc-hHHHHHH---------------HHHHHHHHHHHhcccchHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            77776665432110 0000000               1112346778888899999999999999999999999999999


Q ss_pred             HHhCCCcccchhHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHH
Q 009978          353 FVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLA  432 (521)
Q Consensus       353 ~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  432 (521)
                      ..+|++..+..++.....+..++|.++.|++.||++.|+.       +...+. +....++..+........++..++++
T Consensus       281 ~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~v-------l~~~lv-i~~~~~~~~~~~~~~~~f~i~gll~g  352 (438)
T COG2270         281 ADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPV-------LMIGLV-ILSIAALYLIFLEGELDFWILGLLVG  352 (438)
T ss_pred             HHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcee-------ehHHHH-HHHHHHHHHHHccccHHHHHHHHHHH
Confidence            8899999999999999999999999999999999999832       222222 22222222333223333333334555


Q ss_pred             HHHHhhhhhhhHHHHHhhhccchhhHHhHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHhccC
Q 009978          433 IGMKSFSHSGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYIIFSTG  511 (521)
Q Consensus       433 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  511 (521)
                      ...++........+...++|++.++.+|+++..+.....+||.+.+.+.+.+|+.+..+....++.+++.++++..+.+
T Consensus       353 ~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L~~v~~~  431 (438)
T COG2270         353 TSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLLLRVKVP  431 (438)
T ss_pred             HhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhEEeecCC
Confidence            5555444444444445555579999999999999999999999999999999988888888888888887776666544

>PRK11462 putative transporter; Provisional

Probab=99.87  E-value=1.7e-18  Score=172.88  Aligned_cols=333  Identities=12%  Similarity=0.066  Sum_probs=217.4

Q ss_pred             hhhhhhhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhH----hcchH-HHHHHHHHHHHHHhhhhhccccc----hHH
Q 009978          121 AIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDY----YGGKI-IMAWGVALWSLATFLTPWAADTS----LLA  191 (521)
Q Consensus       121 ~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr----~Grr~-~~~~~~~~~~~~~~l~~~~~~~~----~~~  191 (521)
                      ....+.+.+|+++..+|.+..+.-+--++..|+.|.++||    +|||| .++++.+..+++.+++...+..+    ...
T Consensus        32 l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y  111 (460)
T PRK11462         32 MMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIY  111 (460)
T ss_pred             HHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHH
Confidence            3445667789999999999999999999999999999997    58765 56667777887777665542111    445


Q ss_pred             HHHHHHHHhhhhcchhhHHHHHHHhcCC-chhhHHHHHHHHhhhhhhhHHHHHHHHHhhhcc-------CchhHHHHHHH
Q 009978          192 LLAMRAVVGLAEGVALPAMNNMVARWFP-QTERARAVAIAMGGFTSGNAIGLVLSPILMSQA-------GIFGPFVIFGL  263 (521)
Q Consensus       192 l~~~r~l~G~g~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~-------gw~~~f~~~~~  263 (521)
                      +++..++..++.........++.+|..+ +++|.+..++...+..+|..+++.+...+....       +|+....+.++
T Consensus       112 ~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~i  191 (460)
T PRK11462        112 AAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSV  191 (460)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHH
Confidence            6667777788888888889999999986 688999999999999999888877766555433       47777777777


Q ss_pred             HHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHHhhccccccCCCCCCCCCCchHHHHHhcchHHHHHHHHHHHHHHHHHH
Q 009978          264 SGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVI  343 (521)
Q Consensus       264 ~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  343 (521)
                      +.++..++.+...+|+++.+.                        ++.+.++.++..++||.++.+....++........
T Consensus       192 i~~i~~~i~~~~~kE~~~~~~------------------------~~~~~~~~l~~~~~Nk~~~~l~~~~~~~~~~~~~~  247 (460)
T PRK11462        192 VAFMMLAFCFFTTKERVEAPP------------------------TTTSMREDLRDIWQNDQWRIVGLLTIFNILAVCVR  247 (460)
T ss_pred             HHHHHHHHHHhcceeccCCCc------------------------cCCCHHHHHHHHhCChHHHHHHHHHHHHHHHHHHH
Confidence            666655555544444322110                        11123346678888998887776666666665555


Q ss_pred             HHHHHHHHHHHhCCCcccchhHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHhccchhH
Q 009978          344 LSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPV  423 (521)
Q Consensus       344 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  423 (521)
                      ......|.+...|. +...+.+.....++.+++.++++++.||+++|+       ...............+.+....+..
T Consensus       248 ~~~~~y~~~y~~g~-~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~-------~~~~~~~~~~~~~~~~~~~~~~~~~  319 (460)
T PRK11462        248 GGAMMYYVTWILGT-PEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVT-------IFWWTNALLAVISLAMFFVPMQASI  319 (460)
T ss_pred             HhHhhhhhhhhcCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHH-------HHHHHHHHHHHHHHHHHHhchhHHH
Confidence            55555555554443 333455666777888889999999999998872       2221111111111111111122222


Q ss_pred             HHHHHHHHHHHHHhhhhhhhHHHHHhhhc-------c-chhhHHhHHHHHHHHHHHHHHHHHHHHhhccc
Q 009978          424 MASAWLTLAIGMKSFSHSGFLVNLQEIAP-------Q-YSGVLHGISNTAGTFAAILGTVGAGFFVELVG  485 (521)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~-~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g  485 (521)
                      ......++.....+...+.......+..+       + ..|..++.......+|..+++.+.|.+.+..|
T Consensus       320 ~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~~G  389 (460)
T PRK11462        320 TMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYGG  389 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            22222222222223333333445555544       2 33566778788999999999999999987655

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=99.85  E-value=4.2e-18  Score=163.22  Aligned_cols=354  Identities=16%  Similarity=0.129  Sum_probs=257.3

Q ss_pred             HHHHHHhhhhhhhhhhhh-hhhhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhH----hcc-hHHHHHHHHHHHHHHh
Q 009978          106 LALALCNADRVVMSVAIV-PLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDY----YGG-KIIMAWGVALWSLATF  179 (521)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr----~Gr-r~~~~~~~~~~~~~~~  179 (521)
                      +.-+............+. .+.+.+|+++..+|.+..+.-+--++..|+.|.++||    +|| |+.++.+.+..++.+.
T Consensus        19 ~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~   98 (467)
T COG2211          19 LGDFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAV   98 (467)
T ss_pred             chhhHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHH
Confidence            333444343334444444 4566789999999999999999999999999999997    576 4567788888888888


Q ss_pred             hhhhccc----cchHHHHHHHHHHhhhhcchhhHHHHHHHhcCC-chhhHHHHHHHHhhhhhhhHHHHHHHHHhhh----
Q 009978          180 LTPWAAD----TSLLALLAMRAVVGLAEGVALPAMNNMVARWFP-QTERARAVAIAMGGFTSGNAIGLVLSPILMS----  250 (521)
Q Consensus       180 l~~~~~~----~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~----  250 (521)
                      ++..+++    .+....++...+.+++.........++.++..+ ++||.+..++.+...++|..+...+...+..    
T Consensus        99 l~F~~p~~~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~  178 (467)
T COG2211          99 LLFITPDFSMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGG  178 (467)
T ss_pred             HHHcCCCcccCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            8877742    345667778889999999999999999999884 6789999999999999997777666655543    


Q ss_pred             ---ccCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHHhhccccccCCCCCCCCCCchHHHHHhcchHH
Q 009978          251 ---QAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTW  327 (521)
Q Consensus       251 ---~~gw~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (521)
                         ..||+....+.+++..+..+.+++-.+|++.+...                   .++..+.+...++...++||.++
T Consensus       179 ~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~~~~~-------------------~~~~~~~~~~~~~~~~~~Nrp~~  239 (467)
T COG2211         179 GDKALGYQGTALVLGVIGVILLLFCFFNVKERVVETQP-------------------TKTGVKLKLKDSFLLIFKNRPLL  239 (467)
T ss_pred             CcchhhHHHHHHHHHHHHHHHHHHHHHHhhcccCcccc-------------------CcccccccHHHHHHHHHccchHH
Confidence               34688888888888887777777777666542211                   11112233344556788999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHH
Q 009978          328 SIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFI  407 (521)
Q Consensus       328 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~  407 (521)
                      ..++..++...+.+........|.+...|.+.............+.+++.++..++.+|+|+|+       .......+.
T Consensus       240 ~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~-------~~~~~~~~~  312 (467)
T COG2211         240 LLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKK-------LFLIGLLLL  312 (467)
T ss_pred             HHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHH-------HHHHHHHHH
Confidence            9999888888888888888888888878887777777777777777777899999999999992       233332222


Q ss_pred             HHHHHHHHHhccchhHHHHHHHHHHHHHHhhhhhhhHHHHHhhhc--------cchhhHHhHHHHHHHHHHHHHHHHHHH
Q 009978          408 APGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP--------QYSGVLHGISNTAGTFAAILGTVGAGF  479 (521)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~g~~~g~~~~~~~~g~~~~~~~~g~  479 (521)
                      ..+...+.+...++....++..++.....+...+..++.+.+..+        +..|..+|....+..+|.+++..+.|+
T Consensus       313 ~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~  392 (467)
T COG2211         313 AVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGW  392 (467)
T ss_pred             HHHHHHHHhhcCcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            222222233333344444444455555556666666777666553        356889999999999999999999999


Q ss_pred             Hhhccc
Q 009978          480 FVELVG  485 (521)
Q Consensus       480 l~~~~g  485 (521)
                      +.+..|
T Consensus       393 ~L~~~G  398 (467)
T COG2211         393 ILGAIG  398 (467)
T ss_pred             HHHHcC
Confidence            998776

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=99.85  E-value=9e-18  Score=156.34  Aligned_cols=357  Identities=15%  Similarity=0.114  Sum_probs=247.4

Q ss_pred             hhhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhc-----chHH-HHHHHHHHHHHHhhhhhcc----c-------c
Q 009978          125 LSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYG-----GKII-MAWGVALWSLATFLTPWAA----D-------T  187 (521)
Q Consensus       125 ~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~G-----rr~~-~~~~~~~~~~~~~l~~~~~----~-------~  187 (521)
                      +..|++++....+.+.++..+... ..+.+|+.+|+.+     ||.. +..|.++.+.+..+..++.    .       +
T Consensus         6 MIvEL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~   84 (403)
T PF03209_consen    6 MIVELGVPAWLVALLVALHYLVAP-LRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGP   84 (403)
T ss_pred             HHHHhccHHHHHHHHHHHHHHHHH-HHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccc
Confidence            567899999999999998888765 5889999999998     7754 5556666666555443321    1       1


Q ss_pred             ch-H--HHHHHHHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHhhhccCchhHHHHHHHH
Q 009978          188 SL-L--ALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLS  264 (521)
Q Consensus       188 ~~-~--~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gw~~~f~~~~~~  264 (521)
                      .+ +  ...+.-.+.|+|.+....+..+++.|..|+|+|+++.++...+.-+|.+++..+.+.+.+.+.-.-..-+....
T Consensus        85 ~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~~~  164 (403)
T PF03209_consen   85 FWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQGV  164 (403)
T ss_pred             cHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHH
Confidence            22 2  23455678899999999999999999999999999999999999999999999999998877643333333222


Q ss_pred             HHHH---HHHHHHhcCCCCCCCCCCchhHHHHHHHhhccccccCCCCCCCCCCchHHHHHhcchHHHHHHHHHHHHHHHH
Q 009978          265 GFLW---VLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFF  341 (521)
Q Consensus       265 ~~i~---~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  341 (521)
                      .++.   .++..+- .|++..+..                  ...++++.+..+.++++..+|+...+....++...+++
T Consensus       165 a~i~~~l~~ia~wg-~E~r~~~~~------------------~~~~~~~~~f~~a~~~~~~~~~a~~f~~fl~l~t~a~~  225 (403)
T PF03209_consen  165 ALIALLLNLIALWG-QEPRRSRRA------------------AAAERPRPPFREAWRQVWASPQARRFFVFLFLGTLAFF  225 (403)
T ss_pred             HHHHHHHHHHHHHh-cccCCcccc------------------cCCCCCCccHHHHHHHHHhCCChhHHHHHHHHHHHHHH
Confidence            2222   2222221 222221111                  02233344556678888999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCCcccchhHhHHHHHHHHHHHHHHHHHHHH-HHhcCCCcchhHHHHHHHHHHHHHH---HHHHHh
Q 009978          342 VILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDM-LIQRGTSVTLTRKILQSIGFIAPGI---ALIGLT  417 (521)
Q Consensus       342 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr-~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~  417 (521)
                      .-...+.+|--+.+|+++.+..-+......+..++..+.+++..| .+++       +  ....++.....   .+....
T Consensus       226 ~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~-------~--~a~~G~~~~~~~f~lii~a~  296 (403)
T PF03209_consen  226 MQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKK-------R--TAALGCLLGALAFALIILAG  296 (403)
T ss_pred             hhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCch-------H--HHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999898888763 3333       1  11222222222   222223


Q ss_pred             ccchhHHHHHHHHHHHHHHhhhhhhhHHHHHhhh-ccchhhHHhHHHHHHHHHHHHHHHHHHHHhhcc----c-----ch
Q 009978          418 AAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIA-PQYSGVLHGISNTAGTFAAILGTVGAGFFVELV----G-----SF  487 (521)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~----g-----~~  487 (521)
                      ...+.+.+....++.+...+.........+.+.. +++.|...|.....+.+...++..++|.+.|..    +     .|
T Consensus       297 ~~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY  376 (403)
T PF03209_consen  297 PLGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAY  376 (403)
T ss_pred             hcccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHH
Confidence            3344555444444433334444444444444444 579999999999999999999999999988732    2     37


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcc
Q 009978          488 QGFLLLTSLLYFLSALFYIIFST  510 (521)
Q Consensus       488 ~~~~~~~~~~~~~~~~~~~~~~~  510 (521)
                      ..+|.+-++..++++++...+.+
T Consensus       377 ~~VF~lEa~ll~~a~~ll~~l~~  399 (403)
T PF03209_consen  377 GVVFALEAVLLLAALVLLGRLDR  399 (403)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhh
Confidence            77788877777777766655443

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=99.84  E-value=4.2e-18  Score=161.56  Aligned_cols=403  Identities=13%  Similarity=0.116  Sum_probs=247.9

Q ss_pred             HHHHHHHHHHHhhhhhhhh-hhhhhhhhhhc----CCcchhhHHHHHHHHHHHHhhhhhHHHHhHh-cchHHHHHHHHHH
Q 009978          101 VSMLALALALCNADRVVMS-VAIVPLSLAHG----WSRSFSGIVQSSFLWGYLVSPIAGGTLVDYY-GGKIIMAWGVALW  174 (521)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~----~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~-Grr~~~~~~~~~~  174 (521)
                      +..+....+..-+..+.+. ...-++..+++    .|+++..-+.+.|..-.-+..+++|+++||+ |+|+++.+|.+++
T Consensus        23 l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~  102 (498)
T COG3104          23 LYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILM  102 (498)
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence            4444555555555554443 33445555555    9999999999999888889999999999997 9999999999999


Q ss_pred             HHHHhhhhhccccchHHHHHHHHHHhhhhcchhhHHHHHHHhcCCch--hhHHHHHHHHhhhhhhhHHHHHHHHHhhhcc
Q 009978          175 SLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQT--ERARAVAIAMGGFTSGNAIGLVLSPILMSQA  252 (521)
Q Consensus       175 ~~~~~l~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~  252 (521)
                      .+|.++.+.....+...++++.++.++|.|..-+...++++|.+|++  +|...++++..+.++|+.++|.+.+++.+.+
T Consensus       103 ~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~  182 (498)
T COG3104         103 AIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINY  182 (498)
T ss_pred             HHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhh
Confidence            99999988761126788999999999999999999999999999765  5788999999999999999999999999999


Q ss_pred             CchhHHHHHHHHHHHHHHHHHHhcCCCCCC-----CCCCchhHHHH-H---------H---Hhhc-cc------------
Q 009978          253 GIFGPFVIFGLSGFLWVLVWLSATSSTPDR-----HPQISKYELEY-I---------L---REKQ-KP------------  301 (521)
Q Consensus       253 gw~~~f~~~~~~~~i~~i~~~~~~~~~~~~-----~~~~~~~~~~~-~---------~---~~~~-~~------------  301 (521)
                      ||+..|...++-..+.++..+...+.....     +...+..+... .         .   .... +.            
T Consensus       183 g~~~gF~~aavGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~  262 (498)
T COG3104         183 GWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLPVLGGLVVMILAALLTLLLNQNTFSGVLLVISILI  262 (498)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHccchhcCCCCCCCccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999888777666655543221111     11111111000 0         0   0000 00            


Q ss_pred             ---cccCCCCCCCCCCchHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC----cccchhHhHHHHHHHH
Q 009978          302 ---LLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHID----LRQASWFSAVPWSVMA  374 (521)
Q Consensus       302 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~----~~~~~~~~~~~~~~~~  374 (521)
                         ...+.-..++.. +.-++++   ....+.+...+++..+....+.+..|..+..+.+    ....++..+...+.-+
T Consensus       263 ~~~~~~~~~~~~~~~-~er~r~~---~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~g~~vp~~~fQslNp~~Ii  338 (498)
T COG3104         263 AIIYFAEAFRSPKVF-DERRRLL---AAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIFGFEVPPAWFQSLNPFFII  338 (498)
T ss_pred             HHHHHHHHhccCccH-HHHHHHH---HHHHHHHHHHHHHHHHHhccchHHHHHHHhhcccccceecCHHHHHhhCHHHHH
Confidence               000000000000 1111111   1222333333333333333344444444432211    1235667788888888


Q ss_pred             HHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHh---cc-----chhHHHHHHHHHHHHHHhhhhhhhHHH
Q 009978          375 FTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLT---AA-----KSPVMASAWLTLAIGMKSFSHSGFLVN  446 (521)
Q Consensus       375 i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~  446 (521)
                      +.+++..++..|.++++.......+..+...+..++..++...   ..     .+.++.+...++....-.+..+.-.+.
T Consensus       339 i~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~  418 (498)
T COG3104         339 LFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVLQSFGELFISPVGLSM  418 (498)
T ss_pred             HHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHhCHHHHHH
Confidence            8888999999887776544444444444444444444443333   11     123333333333333333444444445


Q ss_pred             HHhhhc-cchhhHHhHHHHHHHHHHHHHHHHHHH------HhhcccchHHHHHHHHHHHHHHHHHHHHh
Q 009978          447 LQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGF------FVELVGSFQGFLLLTSLLYFLSALFYIIF  508 (521)
Q Consensus       447 ~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~------l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  508 (521)
                      +....| ...+.+++++......+..++..+.+.      ..+... ....|..++...++..+..+..
T Consensus       419 ~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~~~~~~~~~~~~~-~~~~F~~~g~v~i~~~~~~~~~  486 (498)
T COG3104         419 VTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLTAVTDPAYTAFI-EGRVFGTIGVVAIVIGILLLLL  486 (498)
T ss_pred             HHHhChHHHHHHHHHHHHHHHHHHHHhhceecccccccchhhhhhh-hhhhHHHHHHHHHHHHHHHHHh
Confidence            555555 588888888888887887777777663      223332 5677777777666555554443

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.82  E-value=2.3e-18  Score=171.89  Aligned_cols=292  Identities=16%  Similarity=0.149  Sum_probs=227.5

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHHHHHHH
Q 009978           99 KVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLAT  178 (521)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~~~~  178 (521)
                      ..+.++++..+...+....+...+..+.+.|+++.++.|++.+.+-++..+...+..+..-|.-|-|.+-+|.++++++.
T Consensus        97 ~fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgs  176 (735)
T KOG3626|consen   97 MFLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGS  176 (735)
T ss_pred             hHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHH
Confidence            34555566677777777788888999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhcc-------------------c----------------------------cc--hH-HHHHHHHHHhhhhcchhh
Q 009978          179 FLTPWAA-------------------D----------------------------TS--LL-ALLAMRAVVGLAEGVALP  208 (521)
Q Consensus       179 ~l~~~~~-------------------~----------------------------~~--~~-~l~~~r~l~G~g~~~~~~  208 (521)
                      +++++-.                   .                            .+  ++ .++++.++.|+|....++
T Consensus       177 ll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~t  256 (735)
T KOG3626|consen  177 LLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFT  256 (735)
T ss_pred             HHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCcc
Confidence            9877630                   0                            00  23 567889999999999999


Q ss_pred             HHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHhhhcc------------------C-chhHHHHHHHHHHHHH
Q 009978          209 AMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQA------------------G-IFGPFVIFGLSGFLWV  269 (521)
Q Consensus       209 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~------------------g-w~~~f~~~~~~~~i~~  269 (521)
                      ...+|+-|...+++-...+|++.....+|.++|.++++++...+                  | |..-|++.+.+.++..
T Consensus       257 lGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a  336 (735)
T KOG3626|consen  257 LGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSA  336 (735)
T ss_pred             CCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999986522                  1 6677888888888888


Q ss_pred             HHHHHhcCCCCCCCCCCchhHHHHHHHhhc-cccccCCCCCCCCCCchHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Q 009978          270 LVWLSATSSTPDRHPQISKYELEYILREKQ-KPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMP  348 (521)
Q Consensus       270 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  348 (521)
                      +..+++.++.|+...+....+.+....+.. ........++-++....++++++||.+...++...+....+.++.+|+|
T Consensus       337 ~p~f~fPk~lp~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~ikdfp~s~~~ll~N~if~~~~l~~~~~~~~~~G~~tFlP  416 (735)
T KOG3626|consen  337 VPLFFFPKELPKSQKRKRARDLHVLKTESGGAKSDKTFGKKIKDFPKSIKRLLSNPIFMLVVLASVIESLAITGYITFLP  416 (735)
T ss_pred             HHHHhCcccCccccccchhhhhcccccccccccCCcchhhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhHHHhhH
Confidence            888887766665543311111111000000 0000000001123345678899999999999999999999999999999


Q ss_pred             HHHHHHhCCCcccchhHhHHHHHHH-HHHHHHHHHHHHHHHhc
Q 009978          349 IYFNFVYHIDLRQASWFSAVPWSVM-AFTGYLGGLLSDMLIQR  390 (521)
Q Consensus       349 ~~~~~~~g~~~~~~~~~~~~~~~~~-~i~~~~~g~l~dr~~~~  390 (521)
                      -|++.++|.++..+..+.....+.. .+|.+++|++.+|+.-+
T Consensus       417 KyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~  459 (735)
T KOG3626|consen  417 KYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLS  459 (735)
T ss_pred             HHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeeccc
Confidence            9999999999999999887666654 56778999999988655

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=99.81  E-value=3.3e-18  Score=164.24  Aligned_cols=393  Identities=14%  Similarity=0.144  Sum_probs=249.7

Q ss_pred             chhHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhh--hcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcc-hHHHHHHH
Q 009978           95 SERVKVVSMLALALALCNADRVVMSVAIVPLSLA--HGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGG-KIIMAWGV  171 (521)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Gr-r~~~~~~~  171 (521)
                      +.+|+.+.+..+..++.....+.+.+..-++.++  .+.+.+..|++.++..++.+++++..|++..|.+. |+.++.|.
T Consensus        30 ~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~  109 (488)
T KOG2325|consen   30 KTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSF  109 (488)
T ss_pred             CCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHH
Confidence            4457888888888888888888877776666666  78889999999999999999999999999999987 88889999


Q ss_pred             HHHHHHHhhh-hhcc--ccchHHHHHHHHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHh
Q 009978          172 ALWSLATFLT-PWAA--DTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPIL  248 (521)
Q Consensus       172 ~~~~~~~~l~-~~~~--~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l  248 (521)
                      ++.+++.++. .+..  ....+.++++|++.|+|.|. .....+|+++....++|.++++....+..+|.++||.+...+
T Consensus       110 ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n-~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f  188 (488)
T KOG2325|consen  110 LIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVGN-FAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAF  188 (488)
T ss_pred             HHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCccc-HHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHH
Confidence            9999999887 3332  22678899999999999776 677889999988889999999999999999999999888776


Q ss_pred             hhc--cC-----------chhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHHhhccccccCCCCCCCCCCc
Q 009978          249 MSQ--AG-----------IFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIP  315 (521)
Q Consensus       249 ~~~--~g-----------w~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (521)
                      ..-  .|           +..+-|+.+++.++.++...+..+|.+....+.+.++.++    .+     .+.++.+..+-
T Consensus       189 ~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~~~~~~~~~~~~----~~-----~~~~~~~~~~~  259 (488)
T KOG2325|consen  189 TPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYRGIIDKKKRSVEE----EK-----SDIEKVKKPKL  259 (488)
T ss_pred             hhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeecccCccccccccchh----hc-----cchhhhccCCh
Confidence            531  12           2346677778888777777777777655443221111000    00     00001111111


Q ss_pred             hHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhHhHHHHHHHH-HHH-HHHHHHHHHHHhcCCC
Q 009978          316 PFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMA-FTG-YLGGLLSDMLIQRGTS  393 (521)
Q Consensus       316 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-i~~-~~~g~l~dr~~~~~~~  393 (521)
                      ++      +..+.+.+..+...+......+..+.+....++++..++....+....... +.. +......-|+++... 
T Consensus       260 d~------~~~~vc~~~~~~~~~~~~~iet~~~~~~m~~y~w~~~~av~~~gi~~~~~g~ls~~~~l~~~f~~l~~i~~-  332 (488)
T KOG2325|consen  260 DW------VAVLVCIFLRFVVNFIATTIETLSSALTMVMYGWTGSEAVLYNGITLSISGILSVILLLLYIFTRLGKIDK-  332 (488)
T ss_pred             hH------HHHHHHHHHHHHHHHHHHHHHhccchHHHHHhccccchHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhhcc-
Confidence            11      123344455555555666666777777777788887776655444332222 222 222233334333100 


Q ss_pred             cchhHHHHHHHHHHHHHHHH-H--HHhccch---------------------------hHHHHHH--HHHHHHHHhhhhh
Q 009978          394 VTLTRKILQSIGFIAPGIAL-I--GLTAAKS---------------------------PVMASAW--LTLAIGMKSFSHS  441 (521)
Q Consensus       394 ~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~---------------------------~~~~~~~--~~~~~~~~~~~~~  441 (521)
                          |..+...++....... .  .+.....                           .+..+..  ++++..+-.....
T Consensus       333 ----r~~~~~g~l~~f~~~~i~~yp~~~~s~pv~~~~~~~~~~~~~~y~wc~~~~~v~~~~~l~~~i~~~g~~~P~~~~~  408 (488)
T KOG2325|consen  333 ----RRIILLGFLIFFLSYYIFTYPWGFYSGPVQPYNTTYAGCDFEEYSWCDTTTAVPLILYLISFIVVFGIAFPFISTA  408 (488)
T ss_pred             ----ceeeeehHHHHHHhhheeeeeccccccccccccccccCcCcccchhhccCcccChhhheeehhheeccccccccch
Confidence                0111111111111111 1  1111110                           0000111  1111111111222


Q ss_pred             hhHHHHHhhhccchhhHHhHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHhc
Q 009978          442 GFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYIIFS  509 (521)
Q Consensus       442 ~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  509 (521)
                      ....+...+.|++++++.|++......+..++|.+...+....| ++..+.+..+..++...++....
T Consensus       409 ~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g-~~~v~~~~~~~~l~~~~l~~~~~  475 (488)
T KOG2325|consen  409 LDTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTLSG-PRPVWIILLCLLLVVAALWIVFL  475 (488)
T ss_pred             HHHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHHhcC-ccHHHHHHHHHHHHHHHHHHHHH
Confidence            44455566678899999999999999999999999999999888 78887777776666655554443

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=99.78  E-value=2.1e-20  Score=187.14  Aligned_cols=380  Identities=15%  Similarity=0.140  Sum_probs=3.0

Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhhhhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHHHHHHHhhhh
Q 009978          103 MLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTP  182 (521)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~l~~  182 (521)
                      .+++..+...+........+..+.++|+++..+.|++.+.+-++..+..++..++.+|..|-|.+-+|.++++++.++++
T Consensus         7 ~~~~~~~~q~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~   86 (539)
T PF03137_consen    7 FLCLLGLFQMMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFA   86 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHh
Confidence            34444555566666777889999999999999999999999999999999999999998888899999999999998876


Q ss_pred             hcc-----------c-------------------------------------cchHHHHHHHHHHhhhhcchhhHHHHHH
Q 009978          183 WAA-----------D-------------------------------------TSLLALLAMRAVVGLAEGVALPAMNNMV  214 (521)
Q Consensus       183 ~~~-----------~-------------------------------------~~~~~l~~~r~l~G~g~~~~~~~~~~~i  214 (521)
                      +-.           .                                     .-+..++++.++.|+|....++...+|+
T Consensus        87 lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYi  166 (539)
T PF03137_consen   87 LPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYI  166 (539)
T ss_dssp             -----------------------------------------------------------------SSS------------
T ss_pred             ccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeee
Confidence            521           0                                     0135578899999999999999999999


Q ss_pred             HhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHhhhcc---------------------C-chhHHHHHHHHHHHHHHHH
Q 009978          215 ARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQA---------------------G-IFGPFVIFGLSGFLWVLVW  272 (521)
Q Consensus       215 ~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~---------------------g-w~~~f~~~~~~~~i~~i~~  272 (521)
                      -|..++++-+..+|++.+...+|.++|.++++.+...+                     | |...|++.+++.++..+..
T Consensus       167 DDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl  246 (539)
T PF03137_consen  167 DDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPL  246 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999998876421                     2 6667777887777777777


Q ss_pred             HHhcCCCCCCCCCCchhHHHHHH-HhhccccccCC------CCCCCCCCchHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Q 009978          273 LSATSSTPDRHPQISKYELEYIL-REKQKPLLMGN------KHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILS  345 (521)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  345 (521)
                      +.++++.|+..+..++.+.+... ++.......+.      ...-+.....++++++||.+....+..........++.+
T Consensus       247 ~~FPk~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~l~~Ll~Np~f~~~~la~~~~~~~~~G~~t  326 (539)
T PF03137_consen  247 FFFPKKLPGTSERQEEKESSERKEEDSDKDSFKDPKSKKSFGKSIKDFPKALKRLLTNPVFMCLILAGVFESFIVSGFAT  326 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HcCCccCCCcccccchhhhhhcchhhhhhhcccccccccchhhhhhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHH
Confidence            77666555542111111110000 00000000000      112344566778999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCCcccchhHhHHHHH-HHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHH--HHHHHh-----
Q 009978          346 WMPIYFNFVYHIDLRQASWFSAVPWS-VMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGI--ALIGLT-----  417 (521)
Q Consensus       346 ~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-----  417 (521)
                      +.|.|++.+++.++.++.++.....+ +.++|.+++|++.+|++-+....   .++.....++....  ..+.+.     
T Consensus       327 F~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~---~~~~~v~~~v~~~~~~~~~~~~C~~~~  403 (539)
T PF03137_consen  327 FLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGA---AKFCIVVSIVSVILYSPLFFLGCPNPP  403 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHH---HHHHHHHHHHHHHHHHHHHeecCCCCc
Confidence            99999999999999999988876665 55678899999999986542111   11111111111111  111100     


Q ss_pred             -------c---------------------------c---------chhHHHHHHHHHHHHH-HhhhhhhhHHHHHhhhcc
Q 009978          418 -------A---------------------------A---------KSPVMASAWLTLAIGM-KSFSHSGFLVNLQEIAPQ  453 (521)
Q Consensus       418 -------~---------------------------~---------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  453 (521)
                             .                           .         .....+++..++..+. .....+........+.++
T Consensus       404 ~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~~~~~~p~~~i~LR~V~~~  483 (539)
T PF03137_consen  404 IAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFTFMSQVPSTLITLRCVPPE  483 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             eeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHHHHhcccchheeeeccCChh
Confidence                   0                           0         0001111122222222 222334445556666778


Q ss_pred             chhhHHhHHHHHHH-HHHHHHHHHHHHHhhccc
Q 009978          454 YSGVLHGISNTAGT-FAAILGTVGAGFFVELVG  485 (521)
Q Consensus       454 ~~g~~~g~~~~~~~-~g~~~~~~~~g~l~~~~g  485 (521)
                      +|+.+.|+...+.. +|.+-||++.|.+.|..-
T Consensus       484 ~rs~AlGv~~~~~rllg~IPgPIifG~iiD~tC  516 (539)
T PF03137_consen  484 QRSFALGVQWLIIRLLGFIPGPIIFGAIIDSTC  516 (539)
T ss_dssp             ---------------------------------
T ss_pred             hcchhhhHHHHHHHhhcCcchHHHHhHHHhhhh
Confidence            99999999987776 788899999999999753

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=99.75  E-value=6.2e-16  Score=151.05  Aligned_cols=364  Identities=17%  Similarity=0.125  Sum_probs=246.1

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcCCcc-hhhHHHHHH----HHHHHHhhhhhHHHHhHhcchHHHHHHHH
Q 009978           98 VKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRS-FSGIVQSSF----LWGYLVSPIAGGTLVDYYGGKIIMAWGVA  172 (521)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~g~~~s~~----~~~~~i~~~~~G~l~dr~Grr~~~~~~~~  172 (521)
                      +.......+-.+..++.........+.....++.+.. ..+......    .+...+.++..|.++||+|||..+.+..+
T Consensus        21 ~~~~~~~fl~~fa~~l~~~~~~~~~~~~~ct~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~  100 (463)
T KOG2816|consen   21 RHLEPLLFLYMFSWGLSSTVMTNVILYLACTFGDDYQLENGLLLGVKQVTAGLLTLISSPLIGALSDRYGRKVVLLLPLF  100 (463)
T ss_pred             hHHHHHHHHHHHHHHhcCcchhhhhhhhhcccccCccchhhhhhhHHHHhhHHHHHHHHhhhHHhhhhhhhhhhHHHHHH
Confidence            3344445555555555555555666666555543322 223333333    67778899999999999999999999999


Q ss_pred             HHHHHHhhhhhccccchHHHHHHHHHHhhhh--cchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHhhh
Q 009978          173 LWSLATFLTPWAADTSLLALLAMRAVVGLAE--GVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMS  250 (521)
Q Consensus       173 ~~~~~~~l~~~~~~~~~~~l~~~r~l~G~g~--~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~  250 (521)
                      ...+..+...+.   .+|.++    +.|+..  +.......++++|....++|...+|+.+.....+..++|.+++.+..
T Consensus       101 ~~~l~~~~~~~~---~~~~~~----~~~l~g~~~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~  173 (463)
T KOG2816|consen  101 GTILPALCLLFQ---GYWFFL----LLGLSGGFSAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVK  173 (463)
T ss_pred             HHHHhHHHHHHH---HHHHhh----hcccccchhhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            998888887775   344443    444332  34567889999999999999999999999999999999999999999


Q ss_pred             ccCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHHhhccccccCCCCCCCCCCchHHHHHhcchHHHHH
Q 009978          251 QAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSII  330 (521)
Q Consensus       251 ~~gw~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (521)
                      ..|.-..|.+..+..++..+......||+..++........       .............+........-.+|..+.++
T Consensus       174 ~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~l~  246 (463)
T KOG2816|consen  174 FLGIALVFLIAAASGILSLLYMLLFLPESLQEKERSDATLR-------ELTPGSLDSSHVADAFQSLTKVGPDRLLLLLL  246 (463)
T ss_pred             hcCchHHHHHHHHHHHHHHHHHhhccccccCcccccccccc-------ccCCCcccchhhhhhhhhhcccCCCccchHHH
Confidence            99999999999999988888888888877554332210000       00000000001111111222222345555555


Q ss_pred             HHHHHHHHHHHHHHH-HHHHHHHHHhCCCcccchhHhHHHHHHHHHHHHHHH-HHHHHHHhcCCCcchhHHHHHHHHHHH
Q 009978          331 VANAMHSWGFFVILS-WMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGG-LLSDMLIQRGTSVTLTRKILQSIGFIA  408 (521)
Q Consensus       331 l~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g-~l~dr~~~~~~~~~~~~~~~~~~~~~~  408 (521)
                      +..++.......-.. ..+.|++..++++..+.+.+.+...+...++.++.. .+...++.+         .++..++..
T Consensus       247 l~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~---------~~i~lGl~~  317 (463)
T KOG2816|consen  247 LVAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEK---------RLISLGLLS  317 (463)
T ss_pred             HHHHHHHHHHhcCceeEEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---------hHhhHHHHH
Confidence            555544443332222 446778888999999999999999999999987766 667777777         355667777


Q ss_pred             HHHHHHHHhccchhHHHHHHHHHHHHHHhhhhhhhHHHHHhhhccchhhHHhHHHHHHHHHHHHHHHHHHHHhhcc
Q 009978          409 PGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVELV  484 (521)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~  484 (521)
                      -.+..+...+....|..+....+........+...........++++|+++++...+..+...++|.+.+.++..+
T Consensus       318 ~~~~~~~~af~~~~w~~~~~~v~~~~~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~~t  393 (463)
T KOG2816|consen  318 EFLQLLLFAFATETWMMFAAGVVVALAGIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFALT  393 (463)
T ss_pred             HHHHHHHHHHhccchhhhHHHHHHHhhcchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHHHH
Confidence            7777777777777777665555544443333333334344455689999999999999999999999999887543

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=99.72  E-value=5.9e-15  Score=135.54  Aligned_cols=263  Identities=15%  Similarity=0.076  Sum_probs=183.8

Q ss_pred             chhHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHHH
Q 009978           95 SERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALW  174 (521)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~  174 (521)
                      +.++..+.+-.+....++    ..+|..-.+.+++|.+..|++.+.........+.+++.|.++||+|||+..++..++.
T Consensus        34 ~Fqr~yl~vY~La~~aDW----LQGpY~Y~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily  109 (354)
T PF05631_consen   34 RFQRKYLLVYLLAMAADW----LQGPYLYALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILY  109 (354)
T ss_pred             HHHHHHHHHHHHHHHHHH----hhcchhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHH
Confidence            334444444444555444    3445444555789999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhhhccccchHHHHHHHHHHhhhhcchhhHHHHHHHhcC-----CchhhHHHHHHHH-hhhhhhhHHHHHHHHHh
Q 009978          175 SLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWF-----PQTERARAVAIAM-GGFTSGNAIGLVLSPIL  248 (521)
Q Consensus       175 ~~~~~l~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~-----~~~~r~~~~~~~~-~~~~~g~~~g~~l~~~l  248 (521)
                      +++++..- .  ++++.++++|++.|++.+....+..++...-.     |++..+..++... ...++-.+++.+++.++
T Consensus       110 ~~scl~k~-~--~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l  186 (354)
T PF05631_consen  110 SLSCLTKH-S--SNYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVL  186 (354)
T ss_pred             HHHHHHHh-c--cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHH
Confidence            99887543 3  79999999999999999998888888664332     3344455555444 33445556666777777


Q ss_pred             hhccCc--hhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHHhhccccccCCCCCCCCCCchHHHHHhcchH
Q 009978          249 MSQAGI--FGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPT  326 (521)
Q Consensus       249 ~~~~gw--~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (521)
                      .+..+.  ..+|.....+.++..++.....+|...+..+..+                    ..+...+.++.+++||++
T Consensus       187 ~~~~~~g~vaPF~~a~~~l~~~~~~I~~~W~ENyg~~~~~~~--------------------~~~~~~~a~~~i~~d~ri  246 (354)
T PF05631_consen  187 ADWFGFGPVAPFDAAIVLLAVAAVLILKTWPENYGDTSSSSS--------------------LSGSFREAWRAILSDPRI  246 (354)
T ss_pred             HHHhCCCCcchHHHHHHHHHHHHHHHHhcccccCCCcccccc--------------------hHHHHHHHHHHHHcCchh
Confidence            776554  7889888888777777666555555432211000                    011122355678889999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhHhHHHHHHHHHHHHHHHHHHHH
Q 009978          327 WSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDM  386 (521)
Q Consensus       327 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr  386 (521)
                      +.+.++..+.-...+.+.....+-++.  +-+....|++++.+.++.++|+.+..++..+
T Consensus       247 l~LG~~qslFE~smy~FVflWtPaL~~--~~~~~P~GlIFssFM~a~MlGS~lf~~l~s~  304 (354)
T PF05631_consen  247 LLLGLIQSLFEGSMYLFVFLWTPALDP--DDEELPLGLIFSSFMVAMMLGSSLFSRLLSK  304 (354)
T ss_pred             HHHHHHHHHHHHHHHHheeeeeceecC--CCCCCCchHHHHHHHHHHHHHHHHHHHHHhC
Confidence            999999888888877765443333432  1123447899999889999988877665543

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=99.67  E-value=3.6e-15  Score=146.99  Aligned_cols=375  Identities=15%  Similarity=0.098  Sum_probs=229.0

Q ss_pred             hhhhhhhhhhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHh-----cchHHHHHHHHHHHHHHhhhhhccc--cchH
Q 009978          118 MSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYY-----GGKIIMAWGVALWSLATFLTPWAAD--TSLL  190 (521)
Q Consensus       118 ~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~-----Grr~~~~~~~~~~~~~~~l~~~~~~--~~~~  190 (521)
                      .....+.+.+++|+++++...+.+...+...+ .++.|.++|-+     .||+.++++.++..++.+.++..+.  .+..
T Consensus         9 ~~~~~~~l~~~l~ls~~~~~~~~~~~~lPw~~-Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~   87 (433)
T PF03092_consen    9 RLAIYPFLKDDLGLSPAQLQRLSSLASLPWSI-KPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAA   87 (433)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHhCchHH-hhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhh
Confidence            34557788899999999999999999998876 77789999987     3566677777777666655555421  3566


Q ss_pred             HHHHHHHHHhhhhcchhhHHHHHHHhcCC--chhhHHHHHHHHhhhhhhhHHHHHHHHHhhhccCchhHHHHHHHHHHHH
Q 009978          191 ALLAMRAVVGLAEGVALPAMNNMVARWFP--QTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLW  268 (521)
Q Consensus       191 ~l~~~r~l~G~g~~~~~~~~~~~i~~~~~--~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gw~~~f~~~~~~~~i~  268 (521)
                      ...+.-++..+|......++.+++.|...  ++.|+...+.......+|.+++..++|.+.+..+++..|.+.+++.++.
T Consensus        88 ~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~  167 (433)
T PF03092_consen   88 IAVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLM  167 (433)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHH
Confidence            66677788889999999999999999883  3347888889999999999999999999999999999999998887777


Q ss_pred             HHHHHHhcCCCCCCCCCCc----hhHHHHHHHhhccccccCCCCCCCCCCchHHHHHhcchHHHHHH-HHHHHHHHHHHH
Q 009978          269 VLVWLSATSSTPDRHPQIS----KYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIV-ANAMHSWGFFVI  343 (521)
Q Consensus       269 ~i~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~  343 (521)
                      .+..++..+|+++......    +++.+...            ...++....+++.++.|.+|...+ ..++.......-
T Consensus       168 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~  235 (433)
T PF03092_consen  168 LIVALFLLEERKVRPADEVFSFGKEEVPCLF------------GSFREQLSELWRALQQRAIWQPILFFIFFFNLPPSIS  235 (433)
T ss_pred             HHHHHHhhhhccccccchhhcccccccchhh------------HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCCC
Confidence            6666666665322211100    00000000            001122345667777888887666 333222221111


Q ss_pred             HHHHHHHHHHHhC---CCcccchhHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHhcc-
Q 009978          344 LSWMPIYFNFVYH---IDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAA-  419 (521)
Q Consensus       344 ~~~~~~~~~~~~g---~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  419 (521)
                      ....-.+..+..+   +++...+.+..+..++.++|..+..+...+..-        |+.+....++.....+.-+... 
T Consensus       236 ~a~~fy~~~~~~~gp~fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~--------R~~~~~t~~~~~~~~l~~~~lv~  307 (433)
T PF03092_consen  236 SASSFYFQTDALGGPHFSPSFYGTLSIVGSIASLLGILLYRKYFSNWSW--------RRIFVVTTLVSVLASLFDLLLVT  307 (433)
T ss_pred             CccEEEEEeccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH--------HHHHHHHHHHHHHHhcccEEEEE
Confidence            0100011122234   666666666555444445444444333322222        2233222222222222111111 


Q ss_pred             --------chhHHHHHHHHHHHHHHhhhhhhhHHHHHhhhcc-chhhHHhHHHHHHHHHHHHHHHHHHHHhhcccc----
Q 009978          420 --------KSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQ-YSGVLHGISNTAGTFAAILGTVGAGFFVELVGS----  486 (521)
Q Consensus       420 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~----  486 (521)
                              ++.+..+.--++.-...............+..|+ ..|+.+++..++.++|..++..++..+.+..|.    
T Consensus       308 ~~n~~~Gi~d~~f~lgd~~l~~~~~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~~~  387 (433)
T PF03092_consen  308 RWNLDLGIPDQWFALGDTILEEVIGMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTRDD  387 (433)
T ss_pred             EEeeeeCcCCeEEEEEhHHHHHHHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccc
Confidence                    1112112222233333444444455556666664 899999999999999999999999999887652    


Q ss_pred             ---hHHHHHHHHHHHHHHHHHHHHhccCcc
Q 009978          487 ---FQGFLLLTSLLYFLSALFYIIFSTGER  513 (521)
Q Consensus       487 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~  513 (521)
                         .....+++.++.++...+..+++++++
T Consensus       388 f~~l~~lili~~~~~ll~l~ll~lLp~~~~  417 (433)
T PF03092_consen  388 FSNLWLLILICSVIQLLPLPLLFLLPPQKR  417 (433)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHcCCCch
Confidence               345555666666555555555555443

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>TIGR00889 2A0110 nucleoside transporter

Probab=99.63  E-value=1e-14  Score=144.14  Aligned_cols=161  Identities=14%  Similarity=0.084  Sum_probs=134.0

Q ss_pred             hhhhhhhhhhhcCCc--------chhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHHHHHHHhhhhhccc--cc
Q 009978          119 SVAIVPLSLAHGWSR--------SFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAAD--TS  188 (521)
Q Consensus       119 ~~~~~~~~~~~~~s~--------~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~l~~~~~~--~~  188 (521)
                      ....+.+.++.|.++        ++.+...++..++..++.++.|+++||+|+|+++.++.++.+++..+......  .+
T Consensus       228 ~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~  307 (418)
T TIGR00889       228 NIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFG  307 (418)
T ss_pred             HHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhh
Confidence            344465666666543        66799999999999999999999999999999999999998888766655311  12


Q ss_pred             hHHHHHHHHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHH-hhhhhhhHHHHHHHHHhhhc------cCchhHHHHH
Q 009978          189 LLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAM-GGFTSGNAIGLVLSPILMSQ------AGIFGPFVIF  261 (521)
Q Consensus       189 ~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~g~~~g~~l~~~l~~~------~gw~~~f~~~  261 (521)
                      ++.+++.+++.|++.+...+....++.|++|+++|++++|+.+ ...++|..+||+++|++.+.      +||+..|++.
T Consensus       308 ~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~  387 (418)
T TIGR00889       308 YALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFF  387 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHH
Confidence            4567788999999999888898999999999999999999997 67889999999999999987      4699999999


Q ss_pred             HHHHHHHHHHHHHhcCCC
Q 009978          262 GLSGFLWVLVWLSATSST  279 (521)
Q Consensus       262 ~~~~~i~~i~~~~~~~~~  279 (521)
                      +++.++..++.+++.+|+
T Consensus       388 ~~~~~i~~~l~~~~~~~~  405 (418)
T TIGR00889       388 AGYIAILAVLFMIFFKYS  405 (418)
T ss_pred             HHHHHHHHHHHHHHhCCc
Confidence            888888777777777655

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.63  E-value=3.2e-15  Score=124.12  Aligned_cols=136  Identities=21%  Similarity=0.368  Sum_probs=122.4

Q ss_pred             HHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhhhcchhhHHHHHHHhcCC
Q 009978          140 QSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFP  219 (521)
Q Consensus       140 ~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~  219 (521)
                      .+.+.++..+++++.|++.||+|||+.+..+..+..++.++..+.  ++++.+.+.+++.|++.+...+...+++.|.+|
T Consensus         4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~   81 (141)
T TIGR00880         4 LAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALS--SNITVLIIARFLQGFGAAFALVAGAALIADIYP   81 (141)
T ss_pred             EEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCC
Confidence            445678888999999999999999999999999999888888887  889999999999999999999999999999999


Q ss_pred             chhhHHHHHHHHhhhhhhhHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHhcC
Q 009978          220 QTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATS  277 (521)
Q Consensus       220 ~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gw~~~f~~~~~~~~i~~i~~~~~~~  277 (521)
                      +++|++.+++.+....+|..+++.+.+.+.+..+|++.+++.++..++..+...+..|
T Consensus        82 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (141)
T TIGR00880        82 PEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLP  139 (141)
T ss_pred             hhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCC
Confidence            9999999999999999999999999999999899999999988887776666655544

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.61  E-value=8.2e-14  Score=137.66  Aligned_cols=159  Identities=18%  Similarity=0.179  Sum_probs=132.9

Q ss_pred             hhhhhhhhhhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHHHHHHHhhhhhccccchHHHHHHHH
Q 009978          118 MSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRA  197 (521)
Q Consensus       118 ~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~r~  197 (521)
                      .....+.+.++.+.  .+.++..+.+.++..++.++.|++.||+|+|+.+..+..+.+++.++..+.  ++.+.+++..+
T Consensus       235 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~  310 (399)
T PRK05122        235 IATFITLYYAARGW--DGAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLA--PSPWMALIGAA  310 (399)
T ss_pred             HHHHHHHHHHHccc--ccchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHh--ccHHHHHHHHH
Confidence            33444555555565  345677788889999999999999999999999999988888888777777  78888888899


Q ss_pred             HHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHhcC
Q 009978          198 VVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATS  277 (521)
Q Consensus       198 l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gw~~~f~~~~~~~~i~~i~~~~~~~  277 (521)
                      +.|++.+...+.....+.|.+|+++|+++.++++....+|..+++++.+.+.+..||++.|++.+++.++..+..+...+
T Consensus       311 l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  390 (399)
T PRK05122        311 LTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLLYR  390 (399)
T ss_pred             HHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            99999998888888888899999999999999999999999999999999999999999999998888777666665544


Q ss_pred             CCC
Q 009978          278 STP  280 (521)
Q Consensus       278 ~~~  280 (521)
                      +++
T Consensus       391 ~~~  393 (399)
T PRK05122        391 RAP  393 (399)
T ss_pred             ccc
Confidence            443

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.60  E-value=2.1e-14  Score=140.62  Aligned_cols=151  Identities=15%  Similarity=0.078  Sum_probs=128.4

Q ss_pred             hhhhhhhhhhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHHHHHHHhhhhhccccchHHHHHHHH
Q 009978          118 MSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRA  197 (521)
Q Consensus       118 ~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~r~  197 (521)
                      .....+.+.++++.++.+.+++.+...++..++.++.|++.||+|||+.+.++.++..++.++..+....+...++...+
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (377)
T TIGR00890       224 LIGLYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVA  303 (377)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHH
Confidence            33445556788899999999999999999999999999999999999999999988888887776662112333456677


Q ss_pred             HHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHhhhccCchhHHHHHHHHHHHH
Q 009978          198 VVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLW  268 (521)
Q Consensus       198 l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gw~~~f~~~~~~~~i~  268 (521)
                      +.|++.+...+....++.|.+|+++|+++.|+.+....+|..++|.+.+.+.+..||++.|++.+++.++.
T Consensus       304 ~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~  374 (377)
T TIGR00890       304 LVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTS  374 (377)
T ss_pred             HHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHh
Confidence            88888888777888899999999999999999999999999999999999999999999999988776654

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.59  E-value=2.3e-14  Score=142.41  Aligned_cols=150  Identities=13%  Similarity=0.097  Sum_probs=129.8

Q ss_pred             hhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhhhcchh
Q 009978          128 AHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVAL  207 (521)
Q Consensus       128 ~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~r~l~G~g~~~~~  207 (521)
                      +.+.+..+.|++.++..++..++.+++|++.||+|+|+.+.++.++.+++.++.++.  ++.+.+++.+++.|++.+...
T Consensus       256 ~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~--~~~~~~~~~~~l~g~~~~~~~  333 (420)
T PRK09528        256 TPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFA--TGPLEVSILKLLHAFEVPFLL  333 (420)
T ss_pred             ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHHHH
Confidence            346677788999999999999999999999999999999999999988888888887  888989999999999988888


Q ss_pred             hHHHHHHHhcCCchhhHHHHHH-HHhhhhhhhHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHhcCCC
Q 009978          208 PAMNNMVARWFPQTERARAVAI-AMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSST  279 (521)
Q Consensus       208 ~~~~~~i~~~~~~~~r~~~~~~-~~~~~~~g~~~g~~l~~~l~~~~gw~~~f~~~~~~~~i~~i~~~~~~~~~  279 (521)
                      +....++.+.+|++.|+...+. ++....+|.++++.+.|++.+.+||+..|++.+++.++..++.+...+++
T Consensus       334 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~~~  406 (420)
T PRK09528        334 VGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFTLSGD  406 (420)
T ss_pred             HHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            8888999999999888877655 67778899999999999999999999999998888777666555554443

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.57  E-value=1.7e-13  Score=135.70  Aligned_cols=157  Identities=19%  Similarity=0.133  Sum_probs=129.9

Q ss_pred             hhhhhhhhhhhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHHHHHHHhhhhhccccchHHHHHHH
Q 009978          117 VMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMR  196 (521)
Q Consensus       117 ~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~r  196 (521)
                      ......|.+.++.|.++.+.+.+.+...++..++.++.|++.||+|||+.+..+.+..+++.++..+.  ++.+.+.+..
T Consensus       238 ~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~  315 (406)
T PRK11551        238 FLLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAA--PSFAGMLLAG  315 (406)
T ss_pred             HHHHHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhc--CcHHHHHHHH
Confidence            34445677888899999999999999999999999999999999999999888777777776666666  6777777788


Q ss_pred             HHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHhhhccC-chhHHHHHHHHHHHHHHHHHHh
Q 009978          197 AVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAG-IFGPFVIFGLSGFLWVLVWLSA  275 (521)
Q Consensus       197 ~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g-w~~~f~~~~~~~~i~~i~~~~~  275 (521)
                      ++.|++.+...+...+++.|.+|+++|+++.|+.+....+|..+||.+++.+.+..+ |...+++.+...++..+..+..
T Consensus       316 ~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  395 (406)
T PRK11551        316 FAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALLL  395 (406)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHHH
Confidence            888988877888899999999999999999999999999999999999999988654 5556666655555544444444

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=99.56  E-value=3.5e-11  Score=114.10  Aligned_cols=343  Identities=13%  Similarity=0.075  Sum_probs=227.5

Q ss_pred             hhhhhhhhhh-hcCCcchhh-HHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHHHHHHHhhhhhccccchHHHHHHH
Q 009978          119 SVAIVPLSLA-HGWSRSFSG-IVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMR  196 (521)
Q Consensus       119 ~~~~~~~~~~-~~~s~~~~g-~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~r  196 (521)
                      +...|.+.+. .|++..|+. -+.-...-.+...-++...+.|..|.|++++++.+...+...++.+.  ++.+.+-+..
T Consensus        24 Pfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~--~sv~~mq~~q  101 (412)
T PF01770_consen   24 PFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFG--TSVLAMQLMQ  101 (412)
T ss_pred             ccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH--CcHHHHHHHH
Confidence            3445555554 788888875 45556666677788889999999999999999999999998888888  9999999999


Q ss_pred             HHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHhhhcc--CchhHHHHHHHHHHHHHHHHHH
Q 009978          197 AVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQA--GIFGPFVIFGLSGFLWVLVWLS  274 (521)
Q Consensus       197 ~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~--gw~~~f~~~~~~~~i~~i~~~~  274 (521)
                      ++.|++.+. ..+..+++-...|+++-.++.+...+..-+|..++.++|..+...-  +.+....+......+.++..++
T Consensus       102 ~~yg~~~a~-evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~f  180 (412)
T PF01770_consen  102 FFYGLATAA-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIALF  180 (412)
T ss_pred             HHHHHHHHH-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            999999776 7788899999999999999999999999999999999999887743  3444544444433444444444


Q ss_pred             hcCCCCCCC---CCCch-h-----HHHHHHHhhccccccCCCCC--CC-------CCCchHHHHHhcchHHHHHHHHHHH
Q 009978          275 ATSSTPDRH---PQISK-Y-----ELEYILREKQKPLLMGNKHK--PA-------TVIPPFRRLLSKMPTWSIIVANAMH  336 (521)
Q Consensus       275 ~~~~~~~~~---~~~~~-~-----~~~~~~~~~~~~~~~~~~~~--~~-------~~~~~~~~~~~~~~~~~~~l~~~~~  336 (521)
                      + |..++..   +.... .     +.+...+..++.....+++.  +.       ...+.+++..++|.++...+-+.+.
T Consensus       181 L-P~~~~S~~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~y~~~~ll~WSlWWa~a  259 (412)
T PF01770_consen  181 L-PMPKRSLFFHRKPPAEQDANESESDKMNESPESSSSTEKSPSTESSSRKSVLRLLWKDFKSCYSNPRLLLWSLWWAFA  259 (412)
T ss_pred             c-CCCCcccceeccCccccccccccccccccccccccccccCcccccchHHHHHHHHHHHHHHHhcCchHHHHHHHHHHH
Confidence            3 4333221   11000 0     00000000000000000000  00       1123456667889999999999998


Q ss_pred             HHHHHHHHHHHHHHHHHH--hCCCcccchhHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHH
Q 009978          337 SWGFFVILSWMPIYFNFV--YHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALI  414 (521)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~  414 (521)
                      ..++..+..+......+.  .+-+...-|.+-+...+.+.++.+..|++..++.+.       ....+....++.+..++
T Consensus       260 tcgy~qv~nYvQ~LW~~v~~~~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~-------~~l~l~~~S~l~a~~L~  332 (412)
T PF01770_consen  260 TCGYYQVINYVQSLWDTVPPSDNESVYNGAVEAASTLLGAIAALLAGYVKVNWDRW-------GELALGVFSLLQAGLLF  332 (412)
T ss_pred             HhHHHHHHHHHHHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHhHhhcchHHH-------HHHHHHHHHHHHHHHHH
Confidence            889998888888888774  123334467777778888888888888885555554       23444555556666677


Q ss_pred             HHhccchhHHHHHHHHHHHHHHhhhhhhh-HHHHHhhhccchhhHHhHHHHHHHHHHHH
Q 009978          415 GLTAAKSPVMASAWLTLAIGMKSFSHSGF-LVNLQEIAPQYSGVLHGISNTAGTFAAIL  472 (521)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~g~~~~~~~~g~~~  472 (521)
                      .+...++.+...+..++..+...+..+.. .-+...+..+..|-++|+.+++..+-..+
T Consensus       333 lm~~t~~Iwv~Y~~yIif~~~y~fliTiA~~qIA~~l~~e~yaLVFGiNtf~Al~LQti  391 (412)
T PF01770_consen  333 LMSFTGNIWVCYAGYIIFRSLYMFLITIASFQIAKNLSEERYALVFGINTFVALVLQTI  391 (412)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccceeeeeeeHHHHHHHHHHh
Confidence            77777788877776666555544443333 33334444467788888877665544443

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.56  E-value=3.2e-13  Score=132.89  Aligned_cols=155  Identities=11%  Similarity=0.008  Sum_probs=126.2

Q ss_pred             hhhhhhhh-hhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHHHHHHHhhhhhccccchHHHHHHH
Q 009978          118 MSVAIVPL-SLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMR  196 (521)
Q Consensus       118 ~~~~~~~~-~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~r  196 (521)
                      +....|.+ .+++|.++.+.+++.+...++..++.++.|+++||+|||+.+..+.+...+......+.  ++.+.+++.+
T Consensus       235 ~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~  312 (393)
T PRK15011        235 YIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMA--HSPAILLGLQ  312 (393)
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH--hhHHHHHHHH
Confidence            33445544 46789999999999888888888899999999999999998887766665555444455  6777788889


Q ss_pred             HHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHh
Q 009978          197 AVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSA  275 (521)
Q Consensus       197 ~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gw~~~f~~~~~~~~i~~i~~~~~  275 (521)
                      ++.+++.+...+....+..|.+| ++|+++.++++...++|..+|+.+++.+.+.+||+..|++.+++.++..+..+..
T Consensus       313 ~l~~~~~g~~~~~~~~~~~~~~p-~~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~  390 (393)
T PRK15011        313 LLNAIYIGILGGIGMLYFQDLMP-GQAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLRI  390 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhh
Confidence            98888877777777788899987 4699999999999999999999999999999999999998887777766555543

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.56  E-value=3.3e-13  Score=132.32  Aligned_cols=155  Identities=12%  Similarity=0.023  Sum_probs=135.7

Q ss_pred             hhhhhhhhhhhhhhhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHHHHHHHhhhhhccccchHHH
Q 009978          113 ADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLAL  192 (521)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~l~~~~~~~~~~~l  192 (521)
                      .....+....|.+.+++|.++.++|++.+...++..+..++.|++.||+|+|+.+.++.++..+..++.++.  ++.+.+
T Consensus       219 ~~~~~~~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~--~~~~~~  296 (382)
T TIGR00902       219 GAHAAYYGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAI--EAFPLI  296 (382)
T ss_pred             HHHHHHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhH--hhHHHH
Confidence            333344456666777899999999999999999999999999999999999999999999999999998888  899999


Q ss_pred             HHHHHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHH-hhhhhhhHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHH
Q 009978          193 LAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAM-GGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLV  271 (521)
Q Consensus       193 ~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~g~~~g~~l~~~l~~~~gw~~~f~~~~~~~~i~~i~  271 (521)
                      ++.+++.|+..+...+....++.+. |+++|++..++++ ...++|..+|+.++|++.+++|+ ..|++.++++++..++
T Consensus       297 ~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~  374 (382)
T TIGR00902       297 FLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFL  374 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHH
Confidence            9999999999999999999999998 8899999999986 57789999999999999999986 6677777777655433

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK12382 putative transporter; Provisional

Probab=99.55  E-value=4.1e-13  Score=132.31  Aligned_cols=154  Identities=18%  Similarity=0.226  Sum_probs=131.0

Q ss_pred             hhhhhhhhhhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHHHHHHHhhhhhccccchHHHHHHHH
Q 009978          118 MSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRA  197 (521)
Q Consensus       118 ~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~r~  197 (521)
                      .....|.+.++.+.+  +.++..+.+.++..+++++.|++.||+|+|+.+..+..+.+++.++..+.  ++.+.+++..+
T Consensus       235 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~  310 (392)
T PRK12382        235 IGTFVSLYFASKGWA--MAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLA--PTAWVALAGAA  310 (392)
T ss_pred             HHHHHHHHHHhcCCc--hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHc--ccHHHHHHHHH
Confidence            344455555666654  35666777888889999999999999999999999998888888877777  78888888999


Q ss_pred             HHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHh
Q 009978          198 VVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSA  275 (521)
Q Consensus       198 l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gw~~~f~~~~~~~~i~~i~~~~~  275 (521)
                      +.|++.+...+...+.+.+.+|+++|++++|+++....+|..+||.+.+++.+..||+..|.+.+++.++..++.+..
T Consensus       311 l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  388 (392)
T PRK12382        311 LTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTILS  388 (392)
T ss_pred             HHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHhh
Confidence            999999888888888999999999999999999999999999999999999999999999999998877766665544

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.55  E-value=9.4e-13  Score=133.35  Aligned_cols=169  Identities=12%  Similarity=0.118  Sum_probs=124.0

Q ss_pred             hhhhhhhhhhhhhh-hhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHHHHHHHhh-hhhccccchH
Q 009978          113 ADRVVMSVAIVPLS-LAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFL-TPWAADTSLL  190 (521)
Q Consensus       113 ~~~~~~~~~~~~~~-~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~l-~~~~~~~~~~  190 (521)
                      ...+......|.+. +++|.+..+.++..+...++..++.++.|+++||+|||+++.++.++..++.+. ......++..
T Consensus       264 ~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (490)
T PRK10642        264 VTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIG  343 (490)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHH
Confidence            33444555667665 567998888888888889999999999999999999999988877654433322 2221114577


Q ss_pred             HHHHHHHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHhhhcc-CchhHHHHHHHHHHHHH
Q 009978          191 ALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQA-GIFGPFVIFGLSGFLWV  269 (521)
Q Consensus       191 ~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~-gw~~~f~~~~~~~~i~~  269 (521)
                      .+++++++.|++.+........++.+.+|++.|+.++++......++..++|.+.+++.+.. +|+.++++..+.+++.+
T Consensus       344 ~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~  423 (490)
T PRK10642        344 LIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGL  423 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH
Confidence            78888999998877777778888999999999999999755445566788999999888754 47777776666666555


Q ss_pred             HHHHHhcCCCCCC
Q 009978          270 LVWLSATSSTPDR  282 (521)
Q Consensus       270 i~~~~~~~~~~~~  282 (521)
                      +..++ .||+|+.
T Consensus       424 ~~~~~-~pes~~~  435 (490)
T PRK10642        424 ITGVT-MKETANR  435 (490)
T ss_pred             HHHHH-hccccCC
Confidence            54444 4777654

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.54  E-value=4.7e-13  Score=138.68  Aligned_cols=138  Identities=17%  Similarity=0.180  Sum_probs=118.0

Q ss_pred             HHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhhhcchhhHHHHHHHhc
Q 009978          138 IVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARW  217 (521)
Q Consensus       138 ~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~  217 (521)
                      +...+..++.+++.++.|+++||+|||++++++.++.+++.++.++.  ++...+++.+++.|++.+..++...++++|+
T Consensus       599 ~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~--~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl  676 (742)
T TIGR01299       599 FVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFG--NSESAMIALLCLFGGLSIAAWNALDVLTVEL  676 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556778899999999999999999999999999999999888887  7777888888898988888889999999999


Q ss_pred             CCchhhHHHHHHHHhhhhhhhHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHhcCCC
Q 009978          218 FPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSST  279 (521)
Q Consensus       218 ~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gw~~~f~~~~~~~~i~~i~~~~~~~~~  279 (521)
                      +|.++|++++|+......+|.++||++++.+... +...+|++.+++.++.+++.+++ ||+
T Consensus       677 ~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~~~~pf~i~a~~lll~~ll~~~L-PET  736 (742)
T TIGR01299       677 YPSDKRATAFGFLNALCKAAAVLGILIFGSFVGI-TKAAPILFASAALACGGLLALKL-PDT  736 (742)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHhC-CCC
Confidence            9999999999999999999999999999988764 45677877777776665555544 554

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.54  E-value=1.5e-13  Score=136.20  Aligned_cols=158  Identities=17%  Similarity=0.151  Sum_probs=131.2

Q ss_pred             hhhhhhhhhhhhhcCCcc----hhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHHHHHHHhhhhhccccchHHH
Q 009978          117 VMSVAIVPLSLAHGWSRS----FSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLAL  192 (521)
Q Consensus       117 ~~~~~~~~~~~~~~~s~~----~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~l~~~~~~~~~~~l  192 (521)
                      ...+..+.+.++.+.+..    ..+.+.++..++..++.+..|++.||+|||+.+..+..+..++.+...+.  ++.+.+
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~  314 (408)
T PRK09874        237 SIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFV--QTPLQL  314 (408)
T ss_pred             HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHh--ccHHHH
Confidence            344455555555433333    24566667788888999999999999999999999988888777777766  778888


Q ss_pred             HHHHHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHH
Q 009978          193 LAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVW  272 (521)
Q Consensus       193 ~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gw~~~f~~~~~~~~i~~i~~  272 (521)
                      ++.+++.|++.+...+...+.+.+..|+++|++.+++++....+|..+||.+++.+.+..||+..|++.+++.++..+..
T Consensus       315 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~  394 (408)
T PRK09874        315 GILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYS  394 (408)
T ss_pred             HHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999998888776666


Q ss_pred             HHhc
Q 009978          273 LSAT  276 (521)
Q Consensus       273 ~~~~  276 (521)
                      ++..
T Consensus       395 ~~~~  398 (408)
T PRK09874        395 WNSL  398 (408)
T ss_pred             HHHH
Confidence            5543

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.54  E-value=3.2e-13  Score=134.21  Aligned_cols=161  Identities=14%  Similarity=0.064  Sum_probs=137.7

Q ss_pred             hhhhhhhhhhh-hcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHHHHHHHhhhhhccccchHHHHHHH
Q 009978          118 MSVAIVPLSLA-HGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMR  196 (521)
Q Consensus       118 ~~~~~~~~~~~-~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~r  196 (521)
                      +....|.+.++ +|.++.+.|++.+...++..++.++.|++.||.++++.+..+.++.+++.++..+.  ++.+.+.++.
T Consensus       242 ~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~  319 (417)
T PRK10489        242 VRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLM--PMWILAVLCL  319 (417)
T ss_pred             HHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHcc--chHHHHHHHH
Confidence            34456767666 89999999999999999999999999999999888888888888888887777776  7777778888


Q ss_pred             HHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHhc
Q 009978          197 AVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSAT  276 (521)
Q Consensus       197 ~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gw~~~f~~~~~~~~i~~i~~~~~~  276 (521)
                      ++.|++.+...+...+++.+..|++.|++++|++.....+|..+|+.+.|++.+.+|++..++..+++.++..++.....
T Consensus       320 ~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  399 (417)
T PRK10489        320 ALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLLVL  399 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhc
Confidence            99999988877888899999999999999999999999999999999999999999999999888877766666555555


Q ss_pred             CCCC
Q 009978          277 SSTP  280 (521)
Q Consensus       277 ~~~~  280 (521)
                      ++.+
T Consensus       400 ~~~~  403 (417)
T PRK10489        400 GELR  403 (417)
T ss_pred             cccc
Confidence            5443

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.54  E-value=4.3e-13  Score=130.00  Aligned_cols=164  Identities=25%  Similarity=0.329  Sum_probs=145.8

Q ss_pred             HHHHhhhhhhhhhhhhhhhhhh-cCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchH-HHHHHHHHHHHHHhhhhhcc
Q 009978          108 LALCNADRVVMSVAIVPLSLAH-GWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKI-IMAWGVALWSLATFLTPWAA  185 (521)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~-~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~-~~~~~~~~~~~~~~l~~~~~  185 (521)
                      .+.............|.+.++. |.++.+.++..+...++..++.++.|++.||+|||+ .+..+..+..++.+..... 
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-  262 (352)
T cd06174         184 FFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALA-  262 (352)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh-
Confidence            3344444555566677776665 999999999999999999999999999999999999 9999999999999888887 


Q ss_pred             ccchHHHHHHHHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHhhhccCchhHHHHHHHHH
Q 009978          186 DTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSG  265 (521)
Q Consensus       186 ~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gw~~~f~~~~~~~  265 (521)
                       ++.+.+++..++.|++.+...+...+++.|..|+++|++.+++.+....+|..+++.+.+.+.+..+|+..+++.+++.
T Consensus       263 -~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~  341 (352)
T cd06174         263 -PSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALA  341 (352)
T ss_pred             -ccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHH
Confidence             7888899999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             HHHHHHHH
Q 009978          266 FLWVLVWL  273 (521)
Q Consensus       266 ~i~~i~~~  273 (521)
                      ++..+...
T Consensus       342 ~i~~i~~~  349 (352)
T cd06174         342 LLAALLLL  349 (352)
T ss_pred             HHHHHHhe
Confidence            77666543

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.52  E-value=4.3e-13  Score=135.12  Aligned_cols=174  Identities=17%  Similarity=0.078  Sum_probs=127.0

Q ss_pred             HHHHHHHHHHhhhhhhhhhhhhhh-hhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHHHHHHHhh
Q 009978          102 SMLALALALCNADRVVMSVAIVPL-SLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFL  180 (521)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~l  180 (521)
                      ..+++..++............|.+ .+++|.+..+.++..+...++..++.+++|+++||+|||+.+.....+..++..+
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~  340 (467)
T PRK09556        261 WLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTL  340 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHH
Confidence            334444444444444455566755 4668999999999999999999999999999999999998776655444433322


Q ss_pred             hhhccccchHHHHHHHHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhh-hhHHHHHHHHHhhh---------
Q 009978          181 TPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTS-GNAIGLVLSPILMS---------  250 (521)
Q Consensus       181 ~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~~g~~l~~~l~~---------  250 (521)
                      ..+...++.+.+.+.+++.|++.............|.+|+++|+.+.|+.+...++ |..++|.+.|++.+         
T Consensus       341 ~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~  420 (467)
T PRK09556        341 GVYQHATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIF  420 (467)
T ss_pred             HHHHhcCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccc
Confidence            22221156666677888888654443334446777999999999999999988886 77999999999999         


Q ss_pred             ---ccCchhHHHHHHHHHHHHHHHHHHh
Q 009978          251 ---QAGIFGPFVIFGLSGFLWVLVWLSA  275 (521)
Q Consensus       251 ---~~gw~~~f~~~~~~~~i~~i~~~~~  275 (521)
                         ..||+..|++.+++.++..+..+.+
T Consensus       421 ~~~~~~~~~~f~~~~~~~~~~~~~~~~~  448 (467)
T PRK09556        421 GYTLTGWAGTFAALDIAAIGCICLMAIV  448 (467)
T ss_pred             cccccChHHHHHHHHHHHHHHHHHHHHH
Confidence               5789999999877777765554433

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.52  E-value=8.5e-13  Score=129.32  Aligned_cols=151  Identities=13%  Similarity=0.048  Sum_probs=126.2

Q ss_pred             hhhh-hhhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHH
Q 009978          121 AIVP-LSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVV  199 (521)
Q Consensus       121 ~~~~-~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~r~l~  199 (521)
                      ..|. +.+++|.++.+.+++.+.......++.++.|++.||+|||+++.++.++..+...+..+.  ++.+.+++.+++.
T Consensus       221 ~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~  298 (375)
T TIGR00899       221 NMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAAD--NSLWALLMLQLLN  298 (375)
T ss_pred             hhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence            3444 456789999999999888877788889999999999999999888877766665555555  6788888889999


Q ss_pred             hhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHH
Q 009978          200 GLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLS  274 (521)
Q Consensus       200 G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gw~~~f~~~~~~~~i~~i~~~~  274 (521)
                      |++.+...+....++.|..|+ ++++++++++....+|..++|.+++.+.+..||+..|++.+++.++..+...+
T Consensus       299 g~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~  372 (375)
T TIGR00899       299 AIFIGILAGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLLL  372 (375)
T ss_pred             HHHHHHHHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhe
Confidence            999888888888999999875 56799999999999999999999999999999999999988887776655443

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.52  E-value=1.4e-12  Score=127.84  Aligned_cols=150  Identities=15%  Similarity=0.167  Sum_probs=124.6

Q ss_pred             hhhhhhhhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHH
Q 009978          120 VAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVV  199 (521)
Q Consensus       120 ~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~r~l~  199 (521)
                      ..+|.+.++.|.++.+.|++.+...++..+++++.|++.||+|+|+++..+..+..++.+...    . ........++.
T Consensus       221 ~~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~----~-~~~~~~~~~l~  295 (381)
T PRK03633        221 GLMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML----S-QAAMAPALFIL  295 (381)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh----h-hHHHHHHHHHH
Confidence            446777778899999999999999999999999999999999999999888888777665432    1 12334566777


Q ss_pred             hhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHH
Q 009978          200 GLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLS  274 (521)
Q Consensus       200 G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gw~~~f~~~~~~~~i~~i~~~~  274 (521)
                      |++.....|...+++.|..|+++++...+.+....++|..+||.++|++.+++||++.|++.+.+.++..+..++
T Consensus       296 g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~  370 (381)
T PRK03633        296 GAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYLLMLLR  370 (381)
T ss_pred             HHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHh
Confidence            877777789999999999988888888888888999999999999999999999999999988887766554444

>PRK03545 putative arabinose transporter; Provisional

Probab=99.51  E-value=1.5e-12  Score=128.11  Aligned_cols=152  Identities=17%  Similarity=0.100  Sum_probs=124.4

Q ss_pred             hhhhhhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHHHHHHHh-hhhhccccchHHHHHHHHHHh
Q 009978          122 IVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATF-LTPWAADTSLLALLAMRAVVG  200 (521)
Q Consensus       122 ~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~-l~~~~~~~~~~~l~~~r~l~G  200 (521)
                      .|.+.+++|.+..+.+++.+...++..++.++.|++.||+|+|+.. .+..+..++.. +....  ++.+.+++..++.|
T Consensus       229 ~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~-~~~~~~~~~~~~l~~~~--~~~~~~~~~~~l~g  305 (390)
T PRK03545        229 EPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLL-IAIALLLVCLLLLLPAA--NSEWHLSVLSIFWG  305 (390)
T ss_pred             HHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHH-HHHHHHHHHHHHHHHHh--chHHHHHHHHHHHH
Confidence            3445556899999999999999999999999999999999988754 44444444433 33444  67788888889999


Q ss_pred             hhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHhcC
Q 009978          201 LAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATS  277 (521)
Q Consensus       201 ~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gw~~~f~~~~~~~~i~~i~~~~~~~  277 (521)
                      ++.+...+...+.+.+..| ++|++++|+++....+|..+||+++|.+.+.+|++..|++.+.+.++..+..+...+
T Consensus       306 ~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  381 (390)
T PRK03545        306 IAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILIFR  381 (390)
T ss_pred             HHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHcc
Confidence            9987777778888888876 688999999999999999999999999999999999999999888877776666554

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.50  E-value=4.5e-13  Score=134.17  Aligned_cols=157  Identities=13%  Similarity=0.044  Sum_probs=126.9

Q ss_pred             hhhhhhhhhhhhhhhhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHh--cchHHHHH--HHHHHHHHHhhhhhcccc
Q 009978          112 NADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYY--GGKIIMAW--GVALWSLATFLTPWAADT  187 (521)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~--Grr~~~~~--~~~~~~~~~~l~~~~~~~  187 (521)
                      ..........+|.+.+++|.+..+.+++.++..++..++.++.|++.||.  ++|+...+  +.++.+++.+++.+.  +
T Consensus       254 ~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~--~  331 (455)
T TIGR00892       254 FLGFFAPIIFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALA--G  331 (455)
T ss_pred             HHHccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHh--c
Confidence            33333444556777788899999999999999999999999999999984  34443333  333334444555556  7


Q ss_pred             chHHHHHHHHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHhhhcc-CchhHHHHHHHHHH
Q 009978          188 SLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQA-GIFGPFVIFGLSGF  266 (521)
Q Consensus       188 ~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~-gw~~~f~~~~~~~~  266 (521)
                      +++.+++.+++.|++.+...+...+++.|.+|++++++++++++...++|..+||.+++.+.+.. +|++.|++.+++.+
T Consensus       332 ~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~l  411 (455)
T TIGR00892       332 DYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVV  411 (455)
T ss_pred             hHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHH
Confidence            88888999999999999989999999999999999999999999999999999999999999877 59999999888766


Q ss_pred             HHHH
Q 009978          267 LWVL  270 (521)
Q Consensus       267 i~~i  270 (521)
                      +..+
T Consensus       412 i~~~  415 (455)
T TIGR00892       412 SAGL  415 (455)
T ss_pred             HHHH
Confidence            5544

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.50  E-value=1.3e-12  Score=128.82  Aligned_cols=166  Identities=18%  Similarity=0.114  Sum_probs=120.2

Q ss_pred             HHHHHHHhhhhhhhhhhhhhhh-hhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchH--HHH------HHHHHHH
Q 009978          105 ALALALCNADRVVMSVAIVPLS-LAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKI--IMA------WGVALWS  175 (521)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~--~~~------~~~~~~~  175 (521)
                      .+..+.............|.+. +++|.++.+.+++.+...++..++.++.|++.||+|||+  ...      .+.++..
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (399)
T TIGR00893       221 ALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLS  300 (399)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHH
Confidence            3334444444445555666554 568999999999999999999999999999999999996  111      1111111


Q ss_pred             HHHhhhhhccccchHHHHHHHHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHhhhccC-c
Q 009978          176 LATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAG-I  254 (521)
Q Consensus       176 ~~~~l~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g-w  254 (521)
                      +........  ++.+..+....+.+.+.+ ..+...+++.|.+|+++|++++++.+....+|..++|.+.+.+.+..| |
T Consensus       301 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~  377 (399)
T TIGR00893       301 LLMFATNYV--NIPYAALALVALGFFGLG-AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSF  377 (399)
T ss_pred             HHHHHhccc--hhHHHHHHHHHHHHhchh-hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCch
Confidence            111111112  344444444444445544 788999999999999999999999999999999999999999999888 9


Q ss_pred             hhHHHHHHHHHHHHHHHHH
Q 009978          255 FGPFVIFGLSGFLWVLVWL  273 (521)
Q Consensus       255 ~~~f~~~~~~~~i~~i~~~  273 (521)
                      +..|++.+++.++..+..+
T Consensus       378 ~~~~~~~~~~~~~~~~~~~  396 (399)
T TIGR00893       378 AGALMVVAALALIGALSYL  396 (399)
T ss_pred             hHHHHHHHHHHHHHHHHHH
Confidence            9999988887776655544

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.50  E-value=3e-12  Score=125.92  Aligned_cols=166  Identities=14%  Similarity=0.099  Sum_probs=129.5

Q ss_pred             hhhhhhhhhhhhhhhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHHHHHHHhhhhhccccchHHH
Q 009978          113 ADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLAL  192 (521)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~l~~~~~~~~~~~l  192 (521)
                      ..........|.+.+++|.+..+.|...+.+.++..++.++.|++.||+|||+.+..+..+..++.++..... ++...+
T Consensus       219 ~~~~~~~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~  297 (393)
T PRK09705        219 GGYASLIAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLP-LQLPVL  297 (393)
T ss_pred             HHHHHHHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHcc-chHHHH
Confidence            3333455566777777899999999999999999999999999999999999999888888777766554331 232222


Q ss_pred             HHHHHHHhhhhcchhhHHHHHHHhcCC-chhhHHHHHHHHhhhhhhhHHHHHHHHHhhhccC-chhHHHHHHHHHHHHHH
Q 009978          193 LAMRAVVGLAEGVALPAMNNMVARWFP-QTERARAVAIAMGGFTSGNAIGLVLSPILMSQAG-IFGPFVIFGLSGFLWVL  270 (521)
Q Consensus       193 ~~~r~l~G~g~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g-w~~~f~~~~~~~~i~~i  270 (521)
                      .  -++.|++.+...+.......+..+ ++++++.+++.+....++..++|.+.+++.+..| |...|++.++.+++..+
T Consensus       298 ~--~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~  375 (393)
T PRK09705        298 W--AMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMI  375 (393)
T ss_pred             H--HHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH
Confidence            2  245688888778877777777775 5789999999999999999999999999999876 78888888777777666


Q ss_pred             HHHHhcCCCCC
Q 009978          271 VWLSATSSTPD  281 (521)
Q Consensus       271 ~~~~~~~~~~~  281 (521)
                      ......||+++
T Consensus       376 ~~~~~~~~~~~  386 (393)
T PRK09705        376 ITLRFAPARFP  386 (393)
T ss_pred             HHHHhcccccc
Confidence            66666665543

>PRK10054 putative transporter; Provisional

Probab=99.49  E-value=2.6e-12  Score=126.34  Aligned_cols=172  Identities=11%  Similarity=0.119  Sum_probs=126.3

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHH
Q 009978          324 MPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQS  403 (521)
Q Consensus       324 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~  403 (521)
                      |.++.+.+..++...+......++|.|+++.+|++..+.++..+...++..+++++.|+++||+++|+         .+.
T Consensus         7 ~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~---------~~~   77 (395)
T PRK10054          7 RSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKR---------YML   77 (395)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcch---------hHH
Confidence            45677778888888888889999999998889999999999999999999999999999999999982         233


Q ss_pred             HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhhhhhhhHHHHHhhhc-cchhhHHhHHHHHHHHHHHHHHHHHHHHhh
Q 009978          404 IGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVE  482 (521)
Q Consensus       404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~  482 (521)
                      .+....++..+.+...++.+..+....+.........+....+..+..| ++|+++.|+.+...++|..++|.+.+.+.+
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~  157 (395)
T PRK10054         78 LAITAFASGFIAIPLVNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM  157 (395)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444444444444555444333322222223334444555555554 689999999999999999999999999886


Q ss_pred             cccchHHHHHHHHHHHHHHHHHHH
Q 009978          483 LVGSFQGFLLLTSLLYFLSALFYI  506 (521)
Q Consensus       483 ~~g~~~~~~~~~~~~~~~~~~~~~  506 (521)
                       .| ++..|.+.+++.+++.++..
T Consensus       158 -~g-~~~~f~~~~~~~~i~~i~~~  179 (395)
T PRK10054        158 -QS-INLPFWLAAICSAFPLVFIQ  179 (395)
T ss_pred             -hc-cCcHHHHHHHHHHHHHHHHH
Confidence             45 88888888877776654443

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.49  E-value=6.3e-13  Score=135.38  Aligned_cols=150  Identities=12%  Similarity=0.108  Sum_probs=117.7

Q ss_pred             hhhhhhhhh-hhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHHHHHHHhhhhhccccchHHHHHHH
Q 009978          118 MSVAIVPLS-LAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMR  196 (521)
Q Consensus       118 ~~~~~~~~~-~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~r  196 (521)
                      ....+|.+. +++|.+..+.+++.+...++..++.++.|+++||+|||+++..+.++..+..++.......+.+.+.+..
T Consensus       294 ~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (496)
T PRK03893        294 IQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLLL  373 (496)
T ss_pred             HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence            445677776 5889999999999999999999999999999999999999888877766665444333223444444555


Q ss_pred             HHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHhhhccCchhHHHHHHHHHHH
Q 009978          197 AVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFL  267 (521)
Q Consensus       197 ~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gw~~~f~~~~~~~~i  267 (521)
                      ++.++......+...+++.|.+|+++|++++++......+|..+||.+++.+.+.+||+..+...+....+
T Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~~~~~  444 (496)
T PRK03893        374 FFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLSFSLTF  444 (496)
T ss_pred             HHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH
Confidence            55444333445667788999999999999999999999999999999999999999999888666554433

>PRK03699 putative transporter; Provisional

Probab=99.48  E-value=1.7e-12  Score=127.96  Aligned_cols=163  Identities=12%  Similarity=0.089  Sum_probs=130.9

Q ss_pred             HHHhhhhhhhhhhhhhhh-hhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHHHHHHHhhhhhcccc
Q 009978          109 ALCNADRVVMSVAIVPLS-LAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADT  187 (521)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~-~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~l~~~~~~~  187 (521)
                      ++.......+....|.+. +++|.+..+.+++.+.+.++..++.++.|+++||+++|+.+.....+.++...+....  +
T Consensus       215 ~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~--~  292 (394)
T PRK03699        215 LLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNT--D  292 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHc--C
Confidence            333333344555667666 5689999999999999999999999999999999999999888877777766666555  6


Q ss_pred             chHHHHHHHHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHhhhccCchhHHHHHHHHHHH
Q 009978          188 SLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFL  267 (521)
Q Consensus       188 ~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gw~~~f~~~~~~~~i  267 (521)
                      +.+.+.+..++.|++.+...+...++..+..| +++++..+.......+|..++|.+.+++.+..||+..+++.+++.++
T Consensus       293 ~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~  371 (394)
T PRK03699        293 DPSHLLYAILGLGFFSSAIYTTIITLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAV  371 (394)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHH
Confidence            77777777888898888778888888888775 45677888888899999999999999999999999999988887776


Q ss_pred             HHHHHHH
Q 009978          268 WVLVWLS  274 (521)
Q Consensus       268 ~~i~~~~  274 (521)
                      ..+....
T Consensus       372 ~~~~~~~  378 (394)
T PRK03699        372 VFVMCIL  378 (394)
T ss_pred             HHHHHHH
Confidence            6554433

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.46  E-value=7.3e-13  Score=130.60  Aligned_cols=161  Identities=12%  Similarity=0.085  Sum_probs=122.9

Q ss_pred             HHHHHHhhhhhhhhhhhhhhh-hhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHHHHHHH-h-hhh
Q 009978          106 LALALCNADRVVMSVAIVPLS-LAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLAT-F-LTP  182 (521)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~~~~-~-l~~  182 (521)
                      ...+.............|.+. +++|.++.+.+.+.+...++..++.++.|++.||+|||+.+.....+..+.. . +..
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~  305 (394)
T TIGR00883       226 GLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMA  305 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444445555666665 6789999999999999999999999999999999999998775554443332 1 222


Q ss_pred             hccccchHHHHHHHHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHH-HHhhhhhhhHHHHHHHHHhhhccC-chhHHHH
Q 009978          183 WAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAI-AMGGFTSGNAIGLVLSPILMSQAG-IFGPFVI  260 (521)
Q Consensus       183 ~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~-~~~~~~~g~~~g~~l~~~l~~~~g-w~~~f~~  260 (521)
                      +...++.+.+++..++.|++.+...+...+++.|.+|+++|++++++ .+....+|..++|.+++++.+..| |+..++.
T Consensus       306 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~  385 (394)
T TIGR00883       306 LLDSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYY  385 (394)
T ss_pred             HhcCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHH
Confidence            22124666777778889998888889999999999999999999998 456667899999999999999888 8887777


Q ss_pred             HHHHHH
Q 009978          261 FGLSGF  266 (521)
Q Consensus       261 ~~~~~~  266 (521)
                      ..+..+
T Consensus       386 ~~~~~l  391 (394)
T TIGR00883       386 LAALAL  391 (394)
T ss_pred             HHHHHH
Confidence            665543

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.46  E-value=4.7e-12  Score=126.33  Aligned_cols=171  Identities=13%  Similarity=-0.049  Sum_probs=116.2

Q ss_pred             HHHHhhhhhhhhhhhhhhh-hhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHh--cch-HHHHHHHHHHHHHHhhhhh
Q 009978          108 LALCNADRVVMSVAIVPLS-LAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYY--GGK-IIMAWGVALWSLATFLTPW  183 (521)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~--Grr-~~~~~~~~~~~~~~~l~~~  183 (521)
                      .+........+....|.+. +++|.+..+.+...+.+.++..++.++.|+++||+  ++| +......+...+.......
T Consensus       252 ~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~  331 (434)
T PRK11663        252 YVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWL  331 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHH
Confidence            3333333444455566665 66899999999999999999999999999999999  333 3222211111111111111


Q ss_pred             ccccchHHHHHHHHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHhhhccCchhHHHHHHH
Q 009978          184 AADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGL  263 (521)
Q Consensus       184 ~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gw~~~f~~~~~  263 (521)
                      ....+...+.+..+..|++...........+.|.+|+++|+.+.|+.+....+|..++|.+.+++.+..||+..|++.++
T Consensus       332 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~  411 (434)
T PRK11663        332 MPFASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISI  411 (434)
T ss_pred             cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHH
Confidence            11133333334444445443322333445678999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHHhcCC
Q 009978          264 SGFLWVLVWLSATSS  278 (521)
Q Consensus       264 ~~~i~~i~~~~~~~~  278 (521)
                      ++++..+..+...++
T Consensus       412 ~~~~~~~~~~~~~~~  426 (434)
T PRK11663        412 AAGISALLLLPFLNA  426 (434)
T ss_pred             HHHHHHHHHHHHHhh
Confidence            887776666554433

>TIGR00897 2A0118 polyol permease family

Probab=99.46  E-value=4.4e-12  Score=125.24  Aligned_cols=165  Identities=13%  Similarity=0.105  Sum_probs=125.4

Q ss_pred             HHHhhhhhhhhhhhhhhhhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHH-HHHHHHHHHHhhhhhc---
Q 009978          109 ALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMA-WGVALWSLATFLTPWA---  184 (521)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~-~~~~~~~~~~~l~~~~---  184 (521)
                      ++............|.+.+++|.+..+.+++.+...++..++.++.|+++||+|||+.+. .+.+..+++.+.+.+.   
T Consensus       232 ~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~  311 (402)
T TIGR00897       232 IINTIGLFGFAVFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQH  311 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHc
Confidence            333333444555678888889999999999999999999999999999999999988764 3333333333332221   


Q ss_pred             cccchHHHHHHHHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHhhhccCchhHHHHHHHH
Q 009978          185 ADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLS  264 (521)
Q Consensus       185 ~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gw~~~f~~~~~~  264 (521)
                      ..++.+.+++..++.|++.+...+ ....+.+..| ++|++++|+.+....+|..++|.+++.+.+..||+..+++.+++
T Consensus       312 ~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~  389 (402)
T TIGR00897       312 FGHSFAVALIIAIALGIFLAGYVP-LAAVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAAL  389 (402)
T ss_pred             cCCcHHHHHHHHHHHHHHHHHHHH-HHHHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence            114567777788888988876544 4556677654 68999999999999999999999999999999999999999988


Q ss_pred             HHHHHHHHHHh
Q 009978          265 GFLWVLVWLSA  275 (521)
Q Consensus       265 ~~i~~i~~~~~  275 (521)
                      .++..++..+.
T Consensus       390 ~~i~~~~~~~~  400 (402)
T TIGR00897       390 YVVSAFLTAFI  400 (402)
T ss_pred             HHHHHHHHHHh
Confidence            77766655543

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.45  E-value=8.2e-12  Score=122.48  Aligned_cols=149  Identities=19%  Similarity=0.071  Sum_probs=125.1

Q ss_pred             hhhhhhhhhhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHHHHHHHhhhhhccccchHHHHHHHH
Q 009978          118 MSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRA  197 (521)
Q Consensus       118 ~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~r~  197 (521)
                      .....|.+.++.|.++.+.|.+.+...++..+..++.|++.||+|+|+.+..+.++.+++.++.+..  ++.+.+++..+
T Consensus       224 ~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~  301 (382)
T PRK11128        224 YYGFSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGST--TALPWLIVIQI  301 (382)
T ss_pred             HHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhh--hhHHHHHHHHH
Confidence            3334455667799999999999999999999999999999999999999999999988888877777  88898999999


Q ss_pred             HHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHH-hhhhhhhHHHHHHHHHhhhccCchhHHHHHHHHHHHHHH
Q 009978          198 VVGLAEGVALPAMNNMVARWFPQTERARAVAIAM-GGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVL  270 (521)
Q Consensus       198 l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~g~~~g~~l~~~l~~~~gw~~~f~~~~~~~~i~~i  270 (521)
                      +.|++.+...+....++.+. +++++++..+.++ ...++|..+||.++|.+.+.+|+ ..|+..+++.++.++
T Consensus       302 l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~-~~~~~~~~~~~~~~~  373 (382)
T PRK11128        302 LHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA-GVFWVMALVALPALF  373 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHH
Confidence            99999998889999998887 5667788899886 55678889999999999999887 466666666554433

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.45  E-value=3.1e-12  Score=129.64  Aligned_cols=181  Identities=17%  Similarity=0.114  Sum_probs=135.1

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHHHHHHH
Q 009978           99 KVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLAT  178 (521)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~~~~  178 (521)
                      ..+....+..+.............|.+.+++|.+..+.++......++..++.++.|+++||+|||+.+.++.++.+++.
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~  363 (481)
T TIGR00879       284 RLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICL  363 (481)
T ss_pred             HHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence            33333444444444444455566788888899999888999999999999999999999999999999999888877776


Q ss_pred             hhhhh---cccc------chHHHHHHHHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHhh
Q 009978          179 FLTPW---AADT------SLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILM  249 (521)
Q Consensus       179 ~l~~~---~~~~------~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~  249 (521)
                      ++.++   ...+      +...+....++.+.......+....++.|.+|+++|++++++.+...++|.+++|.+.+.+.
T Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~  443 (481)
T TIGR00879       364 FVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTML  443 (481)
T ss_pred             HHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66552   1112      22233333333332222334666778899999999999999999999999999999999999


Q ss_pred             hccCchhHHHHHHHHHHHHHHHHHHhcCCC
Q 009978          250 SQAGIFGPFVIFGLSGFLWVLVWLSATSST  279 (521)
Q Consensus       250 ~~~gw~~~f~~~~~~~~i~~i~~~~~~~~~  279 (521)
                      +..+|++.|++.++++++..++.++..||.
T Consensus       444 ~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~  473 (481)
T TIGR00879       444 ESIGVGGVFIFFGGLNVLGLIFVYFFLPET  473 (481)
T ss_pred             HhcCccceehhHHHHHHHHHHHHheecccC
Confidence            989999999999888887777666655544

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.44  E-value=3.8e-12  Score=127.68  Aligned_cols=164  Identities=12%  Similarity=-0.001  Sum_probs=113.7

Q ss_pred             hhhhhhhhhhhhhhhhh-hcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHh--cchHHH-HHHHHHHHHHHhhhhhcccc
Q 009978          112 NADRVVMSVAIVPLSLA-HGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYY--GGKIIM-AWGVALWSLATFLTPWAADT  187 (521)
Q Consensus       112 ~~~~~~~~~~~~~~~~~-~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~--Grr~~~-~~~~~~~~~~~~l~~~~~~~  187 (521)
                      ....+.....+|.+.++ .|.+..+.+++.+.+.++..++.++.|+++||+  |||+.. .....+..++.++..+....
T Consensus       266 ~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~  345 (452)
T PRK11273        266 YLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPAG  345 (452)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhccc
Confidence            33334455567776655 789999999999999999999999999999999  555432 22223333333332222113


Q ss_pred             chHHHHHHHHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhH-HHHHHHHHhhhccCchhHHHHHHHHHH
Q 009978          188 SLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNA-IGLVLSPILMSQAGIFGPFVIFGLSGF  266 (521)
Q Consensus       188 ~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~-~g~~l~~~l~~~~gw~~~f~~~~~~~~  266 (521)
                      +.+..++..++.|.+..........+..|.+|+++|+++.|+.+....+|.. ++|.+.+.+.+..||+..|++.++.++
T Consensus       346 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~  425 (452)
T PRK11273        346 NPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSI  425 (452)
T ss_pred             ChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHH
Confidence            4444445555555543333333445678999999999999999988888765 489999999999999999998888777


Q ss_pred             HHHHHHHHh
Q 009978          267 LWVLVWLSA  275 (521)
Q Consensus       267 i~~i~~~~~  275 (521)
                      +.++.....
T Consensus       426 ~~~~~~~~~  434 (452)
T PRK11273        426 LAVILLIVV  434 (452)
T ss_pred             HHHHHHHHH
Confidence            765555443

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.44  E-value=1.2e-10  Score=117.65  Aligned_cols=155  Identities=14%  Similarity=0.060  Sum_probs=121.4

Q ss_pred             hhhhhhhhhcCCcchhhHHHH-HHHHHHHHhhhhhHHHHhHhcchHHHHHHHHHHHHHHhhh---hhccccchHHHHHHH
Q 009978          121 AIVPLSLAHGWSRSFSGIVQS-SFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLT---PWAADTSLLALLAMR  196 (521)
Q Consensus       121 ~~~~~~~~~~~s~~~~g~~~s-~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~l~---~~~~~~~~~~l~~~r  196 (521)
                      ..|.+.+++|.+..+.+++.. ...++..++.+++|+++||+|+|+.+.++.++.+++.+++   +.. .++.+.+.+.-
T Consensus       245 ~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~-~~~~~~l~~~~  323 (491)
T PRK11010        245 TTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSIT-DKNLYSMGAAV  323 (491)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc-cccHHHHHHHH
Confidence            344556678999999999974 6678999999999999999999998777666555544322   222 13555555566


Q ss_pred             HHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHhc
Q 009978          197 AVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSAT  276 (521)
Q Consensus       197 ~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gw~~~f~~~~~~~~i~~i~~~~~~  276 (521)
                      ++..++.|...+...++..+..+++.+++..++.+...++|..+++.+.|++.+..||+..|.+.++++++..+......
T Consensus       324 ~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~~  403 (491)
T PRK11010        324 FFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVCR  403 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHH
Confidence            66666666666777888999999999999999999999999999999999999999999999998888887766665553

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=99.44  E-value=5.9e-09  Score=102.21  Aligned_cols=275  Identities=11%  Similarity=-0.030  Sum_probs=170.0

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcC-----CcchhhHHHHHHHHHHHHh-hhhhHHHHhHhcchHHHHHHHH
Q 009978           99 KVVSMLALALALCNADRVVMSVAIVPLSLAHGW-----SRSFSGIVQSSFLWGYLVS-PIAGGTLVDYYGGKIIMAWGVA  172 (521)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----s~~~~g~~~s~~~~~~~i~-~~~~G~l~dr~Grr~~~~~~~~  172 (521)
                      +.+....+..++..+..+.    +-++.+.+.+     +.+.+.++-+...+...+. .++.+++++|++|++++-+...
T Consensus         7 ~k~~~~~l~fF~il~~Y~i----LR~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~   82 (472)
T TIGR00769         7 KKFLPLFLMFFCILFNYTI----LRDTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVIS   82 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHH----HHhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHH
Confidence            3444445555544444333    3344555544     4467889988887777666 8889999999999999887776


Q ss_pred             HHHHHHhhhhhcccc-----------------------------chHHHHHHHHHHhhhhcchhh-HHHHHHHhcCCchh
Q 009978          173 LWSLATFLTPWAADT-----------------------------SLLALLAMRAVVGLAEGVALP-AMNNMVARWFPQTE  222 (521)
Q Consensus       173 ~~~~~~~l~~~~~~~-----------------------------~~~~l~~~r~l~G~g~~~~~~-~~~~~i~~~~~~~~  222 (521)
                      .+....+++++...+                             +.|...+..+...+-...... ...++++|.++.++
T Consensus        83 ~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~q  162 (472)
T TIGR00769        83 PFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDE  162 (472)
T ss_pred             HHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence            666665555443100                             123333334444444444444 77899999999999


Q ss_pred             hHHHHHHHHhhhhhhhHHHHHHHHHhhhc-------c-Cch----hHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchhH
Q 009978          223 RARAVAIAMGGFTSGNAIGLVLSPILMSQ-------A-GIF----GPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYE  290 (521)
Q Consensus       223 r~~~~~~~~~~~~~g~~~g~~l~~~l~~~-------~-gw~----~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~  290 (521)
                      -.|.+++...+.++|.++++.+..++.+.       . .|.    ..+.+.++..++...+...+.+.. ..++...+.+
T Consensus       163 akRfy~l~~~ganlg~i~sg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~  241 (472)
T TIGR00769       163 AKRFYALFGLGANVALIFSGRTIKYFSKLRASLGPGVDGWHVSLKNLMVIVICSGLAIILLYWWVNRNV-LTDPRSYNPA  241 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cCCccccchh
Confidence            99999999999999999999998888631       1 242    233333333333333333332222 1111110111


Q ss_pred             HHHHHHhhccccccCCCCCCCCCCchHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccc----chhHh
Q 009978          291 LEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQ----ASWFS  366 (521)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----~~~~~  366 (521)
                      .           ..++++++....++++.++++|.++.+.+...++....+.+..-.-..+++.+ -++.+    .|.+.
T Consensus       242 ~-----------~~~k~k~k~~~~es~k~i~~S~yL~~ia~~vi~y~~~~nlve~~~k~~v~~~~-p~~~~~~~f~g~~~  309 (472)
T TIGR00769       242 L-----------KEKKVKPKMSTMESLKFLVSSPYILDLALLVIAYGISINLVEVTWKSKLKAQY-PSPNEYSAFMGDFS  309 (472)
T ss_pred             h-----------ccccCCCCCCHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHH
Confidence            0           00122234455678899999999999888888888777777665556666644 23332    33444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhc
Q 009978          367 AVPWSVMAFTGYLGGLLSDMLIQR  390 (521)
Q Consensus       367 ~~~~~~~~i~~~~~g~l~dr~~~~  390 (521)
                      ...++..++..++.+++.+|+|-+
T Consensus       310 ~~~gi~tl~~~l~~~~l~~~~Gw~  333 (472)
T TIGR00769       310 TWTGVVSVTMMLLSGNVIRKYGWL  333 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHH
Confidence            455555656666678899988877

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=99.43  E-value=1.9e-11  Score=116.81  Aligned_cols=183  Identities=10%  Similarity=0.077  Sum_probs=143.1

Q ss_pred             hHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Q 009978          316 PFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVT  395 (521)
Q Consensus       316 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~  395 (521)
                      ...+++.++....+.+...+...+...+.+++--++++ .+..+...|........+.++.-++.+++.+|+|+.+    
T Consensus       363 ~~~~~~~s~~~llff~~av~mG~g~~lv~tFLfWHled-~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~----  437 (618)
T KOG3762|consen  363 DVGKVFASPHILLFFFVAVVMGAGVGLVFTFLFWHLED-LGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVN----  437 (618)
T ss_pred             HHHHHhcCCCEEehhHHHHHHHHHHHHHHHHHHHHHhh-cCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccc----
Confidence            34467788888877777777777777888888888888 6767777887777778888888899999999999873    


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhhhhhhhHHHHHhhhc-cchhhHHhHHHHHHH-HHHHHH
Q 009978          396 LTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGT-FAAILG  473 (521)
Q Consensus       396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~-~g~~~~  473 (521)
                           ++.+++.+...-++.+....++|+.+..=++-....+..+....+++..+.| +.++++.++...... +|-.+|
T Consensus       438 -----v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~G  512 (618)
T KOG3762|consen  438 -----VMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLG  512 (618)
T ss_pred             -----eeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchh
Confidence                 4556666777777777778888887777677666667777777777776665 689999998877764 999999


Q ss_pred             HHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHhc
Q 009978          474 TVGAGFFVELVGSFQGFLLLTSLLYFLSALFYIIFS  509 (521)
Q Consensus       474 ~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  509 (521)
                      ++++|.+.+.+| -...|..+++.+++.++++..+.
T Consensus       513 slIGG~~v~~fg-~~ttf~~~giAcl~~l~~~~~iq  547 (618)
T KOG3762|consen  513 SLIGGFVVERFG-ARTTFRIFGIACLVTLALFISIQ  547 (618)
T ss_pred             hhhhhhhheeeh-hHHHHHHHHHHHHHHHHHHHHhh
Confidence            999999999998 67888888877777666655543

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.41  E-value=3.1e-12  Score=126.74  Aligned_cols=140  Identities=13%  Similarity=0.080  Sum_probs=114.9

Q ss_pred             hhhhh-hhhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHHHHHHHh-hhhhccccchHHHHHHHH
Q 009978          120 VAIVP-LSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATF-LTPWAADTSLLALLAMRA  197 (521)
Q Consensus       120 ~~~~~-~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~-l~~~~~~~~~~~l~~~r~  197 (521)
                      ...|. +.+++|.+..+.+++.+...++..++.++.|++.||+|||+.+.++.++..+..+ +....  ++.+.+.+..+
T Consensus       259 ~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~  336 (405)
T TIGR00891       259 DLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIG--ANVAVLGLGLF  336 (405)
T ss_pred             hhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhC--CchHHHHHHHH
Confidence            33444 4457899999999999999999999999999999999999998888776533332 23333  56666777777


Q ss_pred             HHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHhhhccC-chhHHHHH
Q 009978          198 VVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAG-IFGPFVIF  261 (521)
Q Consensus       198 l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g-w~~~f~~~  261 (521)
                      +.|+..+...+...+++.|.+|+++|++++|+.+....+|..++|++.+++.+..| |+..+...
T Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~~~~~~  401 (405)
T TIGR00891       337 FQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYGTALASL  401 (405)
T ss_pred             HHHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHhh
Confidence            77777777778888999999999999999999999999999999999999999988 87766553

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.41  E-value=1.7e-11  Score=123.16  Aligned_cols=175  Identities=10%  Similarity=0.051  Sum_probs=130.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCcccchhHhHHHHHHHHHHHHHHHHHHHH-HHhcCCCcchhHHHH
Q 009978          325 PTWSIIVANAMHSWGFFVILSWMPIYFNFV--YHIDLRQASWFSAVPWSVMAFTGYLGGLLSDM-LIQRGTSVTLTRKIL  401 (521)
Q Consensus       325 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr-~~~~~~~~~~~~~~~  401 (521)
                      .++.+.+..++..++++++..++|.|+++.  +|++..+++.+.+...++..++.+++|+++|| +|+|         ..
T Consensus        11 ~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~---------~~   81 (475)
T TIGR00924        11 PLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTK---------KT   81 (475)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchH---------HH
Confidence            455666677777889999999999999987  89999999999999999999999999999999 7988         33


Q ss_pred             HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhhhhhhhHHHHHhhhcc----chhhHHhHHHHHHHHHHHHHHHHH
Q 009978          402 QSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQ----YSGVLHGISNTAGTFAAILGTVGA  477 (521)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~g~~~g~~~~~~~~g~~~~~~~~  477 (521)
                      +..+..+.++..+.+...++.+.......+.....+...+.......+..|+    +|+++.++.+...++|..+||.+.
T Consensus        82 l~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~  161 (475)
T TIGR00924        82 MVLGGIVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLA  161 (475)
T ss_pred             HHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHH
Confidence            4444455555555555444444333333332233334445556666666652    388899999999999999999999


Q ss_pred             HHHhhcccchHHHHHHHHHHHHHHHHHHHHhc
Q 009978          478 GFFVELVGSFQGFLLLTSLLYFLSALFYIIFS  509 (521)
Q Consensus       478 g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  509 (521)
                      |++.+..| |+..|.+.++..+++.+.++..+
T Consensus       162 g~l~~~~g-~~~~f~~~~~~~~~~~l~~~~~~  192 (475)
T TIGR00924       162 GVIAENYG-YHVGFNLAAVGMVIGLLTFFAGR  192 (475)
T ss_pred             HHHHHhcC-hHHHHHHHHHHHHHHHHHHHHcc
Confidence            99999887 99999888876666655554443

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.41  E-value=2e-11  Score=115.23  Aligned_cols=165  Identities=20%  Similarity=0.198  Sum_probs=136.2

Q ss_pred             HHHhhhhhhhhhhhhhhhhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHHHHHHHhhhhhccccc
Q 009978          109 ALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTS  188 (521)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~l~~~~~~~~  188 (521)
                      +........++..-|.+.+..|.+.+.++++.-.+.++..+++.+.|++.|| +.|+.+.....+.++..+.+.+.. ++
T Consensus       222 l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~-~~  299 (394)
T COG2814         222 LFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTG-AS  299 (394)
T ss_pred             HHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhc-ch
Confidence            3334444567778888888899999999999999999999999999999999 999998888777777776655542 55


Q ss_pred             hHHHHHHHHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHhhhccCchhHHHHHHHHHHHH
Q 009978          189 LLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLW  268 (521)
Q Consensus       189 ~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gw~~~f~~~~~~~~i~  268 (521)
                      .+..++.-++.|++.+.........+++.. +|.++.+.+++....++|..+|..++|.+.+++|+....++.+++.++.
T Consensus       300 ~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~-p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a  378 (394)
T COG2814         300 PALALALLFLWGFAFSPALQGLQTRLARLA-PDAADLAGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLA  378 (394)
T ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHhcccC-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Confidence            666677777788887776666666677733 5889999999999999999999999999999999999999999988887


Q ss_pred             HHHHHHhc
Q 009978          269 VLVWLSAT  276 (521)
Q Consensus       269 ~i~~~~~~  276 (521)
                      .++.+...
T Consensus       379 ~~~~~~~~  386 (394)
T COG2814         379 LLLALLSA  386 (394)
T ss_pred             HHHHHHHH
Confidence            77665543

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.40  E-value=9.6e-12  Score=124.10  Aligned_cols=143  Identities=13%  Similarity=0.080  Sum_probs=107.3

Q ss_pred             hhhhhhhhhhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHHHHHHHhhhhhccccchHHHHHHHH
Q 009978          118 MSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRA  197 (521)
Q Consensus       118 ~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~r~  197 (521)
                      +...+|.+.++.|.++.+.+.+.+...++..++.++.|++.||+|||+.+..+.++..++.++......++...+....+
T Consensus       250 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (426)
T PRK12307        250 IFGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGACLF  329 (426)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHH
Confidence            44456777777899999999999999999999999999999999999999888877766655444331122222222222


Q ss_pred             HHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHhhhccCchhHHHH
Q 009978          198 VVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVI  260 (521)
Q Consensus       198 l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gw~~~f~~  260 (521)
                      ..+++.....+....++.|.+|+++|++++|+......+|..++|.+.+++.+.+|+....++
T Consensus       330 ~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g~~~~~~~  392 (426)
T PRK12307        330 GLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMGLGAALTF  392 (426)
T ss_pred             HHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHcccHHHHHHH
Confidence            222222333455667889999999999999999999999999999999999998886654333

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.40  E-value=5.1e-12  Score=117.67  Aligned_cols=178  Identities=16%  Similarity=0.133  Sum_probs=145.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHH
Q 009978          325 PTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSI  404 (521)
Q Consensus       325 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~  404 (521)
                      .+....+.+..+++.-..+..-.|...++ .++|..+.|++.+.+.+...++.++.|.++||.+.|         ..+..
T Consensus        30 if~~~fiGYa~fYl~RknF~~a~p~l~e~-~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr---------~fm~~   99 (448)
T COG2271          30 IFLSIFIGYAAFYLTRKNFNLAMPALIED-GGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPR---------YFMAF   99 (448)
T ss_pred             HHHHHHHHHHHHHHHHHhHhhccHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCc---------eeehH
Confidence            34445555555555555666666666666 789999999999999999999999999999999988         56778


Q ss_pred             HHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhhhhhhhHHHHHhhhc-cchhhHHhHHHHHHHHHHHHHHHHH--HHHh
Q 009978          405 GFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGA--GFFV  481 (521)
Q Consensus       405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~--g~l~  481 (521)
                      ++++.++..+.+.+.++...+.++..+...+-+...|.....+..-.+ ++||+..++.++..++|+.+.|++.  +++.
T Consensus       100 gLilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~  179 (448)
T COG2271         100 GLILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFA  179 (448)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHH
Confidence            888888888888888888877777777777778888887777777766 6999999999999999999999999  8888


Q ss_pred             hcccchHHHHHHHHHHHHHHHHHHHHhccCcc
Q 009978          482 ELVGSFQGFLLLTSLLYFLSALFYIIFSTGER  513 (521)
Q Consensus       482 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  513 (521)
                      ++.+ ++..|++.+++.++..++.+...|+++
T Consensus       180 ~~~~-w~~~f~~pgiiaiival~~~~~~rd~P  210 (448)
T COG2271         180 FHGG-WRAAFYFPGIIAIIVALILLFLLRDRP  210 (448)
T ss_pred             hccc-hhHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence            8875 999999999988877776666655544

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.40  E-value=3.4e-11  Score=118.63  Aligned_cols=169  Identities=14%  Similarity=0.194  Sum_probs=125.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHH
Q 009978          327 WSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGF  406 (521)
Q Consensus       327 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~  406 (521)
                      +......++...+.+.+..+++.|+++..|++..+.|+..+...+...+.+++.|+++||+++|         .++..+.
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k---------~~l~~~~   83 (400)
T PRK11646         13 YFLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAK---------PMIVTGM   83 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCch---------HHHHHHH
Confidence            4555777777888888899999999888999999999999999999999999999999999988         3334444


Q ss_pred             HHHHHHHHHHhccchhHHHHHHHHHHHHHHhhhhhhhHHHHHhhh-ccchhhHHhHHHHHHHHHHHHHHHHHHHHhhccc
Q 009978          407 IAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIA-PQYSGVLHGISNTAGTFAAILGTVGAGFFVELVG  485 (521)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g  485 (521)
                      ...++..+.....++.+......++.....+...+.......+.. +++++++.|+.....++|..+||.+.|.+. ..|
T Consensus        84 ~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g  162 (400)
T PRK11646         84 LMRAAGFATMAIAHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYD  162 (400)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhh
Confidence            444444444444455554444333333333444455555556655 579999999999999999999999999998 455


Q ss_pred             chHHHHHHHHHHHHHHHHHHH
Q 009978          486 SFQGFLLLTSLLYFLSALFYI  506 (521)
Q Consensus       486 ~~~~~~~~~~~~~~~~~~~~~  506 (521)
                       ++..|++.++..++..++..
T Consensus       163 -~~~~f~~~~~~~~~~~i~~~  182 (400)
T PRK11646        163 -FRLVCATGAVLFVLAAAFNA  182 (400)
T ss_pred             -HHHHHHHHHHHHHHHHHHHH
Confidence             88888888777666554433

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.39  E-value=2.8e-11  Score=118.02  Aligned_cols=170  Identities=12%  Similarity=0.101  Sum_probs=123.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHH
Q 009978          328 SIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFI  407 (521)
Q Consensus       328 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~  407 (521)
                      .+.+..++...+.......+|.|..+ .+.++.+.+++.+...++..++.++.|++.||+|||+         .+..+..
T Consensus         3 ~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~---------~~~~~~~   72 (365)
T TIGR00900         3 LLFAAQLISLIGTAITQVALPLYVLA-GTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKK---------VMIGADL   72 (365)
T ss_pred             ehHHHHHHHHHHHHHHHHHHHHHHHH-hhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhH---------HHHHHHH
Confidence            34566666667777777888888888 7899999999999999999999999999999999982         2222222


Q ss_pred             HHHHHHHHHhccc-----hhHHHHHHHHHHHHHHhhhhhhhHHHHHhhhc-cchhhHHhHHHHHHHHHHHHHHHHHHHHh
Q 009978          408 APGIALIGLTAAK-----SPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFV  481 (521)
Q Consensus       408 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~  481 (521)
                      +..+.........     +.+..++..++.....+...+....+..+..| ++|+++.|+.+....+|..++|.+.+.+.
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~  152 (365)
T TIGR00900        73 IRAVLVAVLPFVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMY  152 (365)
T ss_pred             HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            2222222222212     44444444444444455556666777777776 59999999999999999999999999999


Q ss_pred             hcccchHHHHHHHHHHHHHHHHHHHHh
Q 009978          482 ELVGSFQGFLLLTSLLYFLSALFYIIF  508 (521)
Q Consensus       482 ~~~g~~~~~~~~~~~~~~~~~~~~~~~  508 (521)
                      +..| ++..|++.++..+++.+..+..
T Consensus       153 ~~~g-~~~~~~~~~~~~~~~~~~~~~~  178 (365)
T TIGR00900       153 ATLG-IKWAIWVDAVGFAISALLIVSV  178 (365)
T ss_pred             HHhh-HHHHHHHHHHHHHHHHHHHHhc
Confidence            9887 8888888777666665554444

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.38  E-value=2.2e-11  Score=122.06  Aligned_cols=155  Identities=21%  Similarity=0.208  Sum_probs=138.3

Q ss_pred             hhhhhhhhhhh-hhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHHHHHHHhhhhhccccchHHHHHH
Q 009978          117 VMSVAIVPLSL-AHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAM  195 (521)
Q Consensus       117 ~~~~~~~~~~~-~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~  195 (521)
                      .+...+|.+.+ ++|.++...|++.+++.+|..+++++.+++.+|+++++.+..+.++++++.+..++.  ++.+..++.
T Consensus       236 a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~--~~~~~~~~~  313 (524)
T PF05977_consen  236 AVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALS--PSFWLALIA  313 (524)
T ss_pred             HHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcc--hHHHHHHHH
Confidence            34455777764 589999999999999999999999999999999999999999999999999988988  899999999


Q ss_pred             HHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHH
Q 009978          196 RAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWL  273 (521)
Q Consensus       196 r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gw~~~f~~~~~~~~i~~i~~~  273 (521)
                      .++.|++........++.+.+..|++.|||+++++.+....+..+|..+.|.+.+.+|.+..+.+.++..++..++..
T Consensus       314 l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~  391 (524)
T PF05977_consen  314 LFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIAL  391 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence            999999999888899999999999999999999999999999999999999999999999999888776555544443

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR00895 2A0115 benzoate transport

Probab=99.38  E-value=6.9e-12  Score=123.83  Aligned_cols=140  Identities=21%  Similarity=0.212  Sum_probs=113.0

Q ss_pred             HHHHHhhhhhhhhhhhhhhhhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHHHHHHHhhhhhccc
Q 009978          107 ALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAAD  186 (521)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~l~~~~~~  186 (521)
                      ..++............|.+.+++|.++.+.++..+...++..++.++.|++.||+|+|+.+....+......++....  
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--  335 (398)
T TIGR00895       258 LYFMLLVGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTL--  335 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHh--
Confidence            333334444455556778888899999999999999999999999999999999999955544444333333333324  


Q ss_pred             cchHHHHHHHHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHh
Q 009978          187 TSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPIL  248 (521)
Q Consensus       187 ~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l  248 (521)
                      .+.+.+++..++.|++.+...+...+++.|.+|+++|++++|+......+|..+||.++|++
T Consensus       336 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l  397 (398)
T TIGR00895       336 FSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL  397 (398)
T ss_pred             hCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence            66777788889999999999999999999999999999999999999999999999999876

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.38  E-value=3.8e-11  Score=118.79  Aligned_cols=175  Identities=15%  Similarity=0.185  Sum_probs=125.8

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhHhHHHHHHHHHHHHHHHHHHHHH-HhcCCCcchhHHHHH
Q 009978          324 MPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDML-IQRGTSVTLTRKILQ  402 (521)
Q Consensus       324 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~-~~~~~~~~~~~~~~~  402 (521)
                      +.++..+.......+.++++..++|.|+++.+|++..+++.+.........++.+++|+++||+ |+|         ..+
T Consensus         9 ~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrr---------r~i   79 (493)
T PRK15462          9 RAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNR---------MAV   79 (493)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcH---------HHH
Confidence            4566667777777888999999999999988899999999999999999899999999999999 888         233


Q ss_pred             HHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHHhhhhhhhHHHHHhhhcc---chhhHHhHHHHHHHHHHHHHHHHHH
Q 009978          403 SIGFIAPGIALIGLTAAK-SPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQ---YSGVLHGISNTAGTFAAILGTVGAG  478 (521)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~~~g~~~~~~~~g~~~~~~~~g  478 (521)
                      .++.+...+..+.+.... ........+.+.....+...+....+..+..|+   +|.++.++.+...++|+.++|.+.|
T Consensus        80 liG~il~~lg~lll~~~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g  159 (493)
T PRK15462         80 MLGALLMAIGHVVLGASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACG  159 (493)
T ss_pred             HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHH
Confidence            344444444333332221 112122222222222233334455667777763   6899999999999999999999999


Q ss_pred             HHhhcccchHHHHHHHHHHHHHHHHHHHHh
Q 009978          479 FFVELVGSFQGFLLLTSLLYFLSALFYIIF  508 (521)
Q Consensus       479 ~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  508 (521)
                      ++.+..| |+..|.++++..+++.+.++..
T Consensus       160 ~L~~~~G-w~~~F~iaaigm~l~li~~~~~  188 (493)
T PRK15462        160 YAQEEYS-WAMGFGLAAVGMIAGLVIFLCG  188 (493)
T ss_pred             HHHhhhC-hHHHHHHHHHHHHHHHHHHHHh
Confidence            9999887 9999988877666666655543

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.37  E-value=1.8e-11  Score=120.72  Aligned_cols=142  Identities=13%  Similarity=0.098  Sum_probs=121.1

Q ss_pred             cCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhhhcchhhH
Q 009978          130 GWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPA  209 (521)
Q Consensus       130 ~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~r~l~G~g~~~~~~~  209 (521)
                      +.+..+.|.+.++..+...++.++.|++.||+|+|+.+.++.++.+++..+....  ++.+.+++.+++.|++.+.....
T Consensus       250 ~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~--~~~~~~~~~~~l~g~~~~~~~~~  327 (396)
T TIGR00882       250 QQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFA--TTALEVVILKMLHAFEVPFLLVG  327 (396)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHHHHH
Confidence            5566778999999999999999999999999999999999999888888776777  88888888999999997776666


Q ss_pred             HHHHHHhcCCchhhHHHHHH-HHhhhhhhhHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHH
Q 009978          210 MNNMVARWFPQTERARAVAI-AMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWL  273 (521)
Q Consensus       210 ~~~~i~~~~~~~~r~~~~~~-~~~~~~~g~~~g~~l~~~l~~~~gw~~~f~~~~~~~~i~~i~~~  273 (521)
                      ...++.+..+++.++...+. .+....+|..+++.++|++.+..||+..|++.+++.++..+...
T Consensus       328 ~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~~~  392 (396)
T TIGR00882       328 CFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLISV  392 (396)
T ss_pred             HHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence            77778888887777776665 67889999999999999999999999999999988777665543

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.37  E-value=4.4e-11  Score=121.28  Aligned_cols=164  Identities=18%  Similarity=0.069  Sum_probs=123.6

Q ss_pred             hhhhhhhhhhhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHHHHHHHhhhhhccccc-h-HHHHH
Q 009978          117 VMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTS-L-LALLA  194 (521)
Q Consensus       117 ~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~l~~~~~~~~-~-~~l~~  194 (521)
                      ......|.+.++.|.+....++......+...++.++.|+++||+|||++++.+.++.+++.++++.....+ . .....
T Consensus       289 ~~~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~  368 (479)
T PRK10077        289 VVLYYAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALL  368 (479)
T ss_pred             HHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHH
Confidence            344556888888999888778887788888999999999999999999999999999888877665431111 1 12233


Q ss_pred             HHHHHhhhhcc-hhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHh------hhccCchhHHHHHHHHHHH
Q 009978          195 MRAVVGLAEGV-ALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPIL------MSQAGIFGPFVIFGLSGFL  267 (521)
Q Consensus       195 ~r~l~G~g~~~-~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l------~~~~gw~~~f~~~~~~~~i  267 (521)
                      +.++.+++.+. ..+....++.|.+|+++|++++|+......+|..+++.+.+.+      .+.++|++.|++.++++++
T Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  448 (479)
T PRK10077        369 SMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVL  448 (479)
T ss_pred             HHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHH
Confidence            33444444443 3467789999999999999999999999999999887666544      3577899999998888777


Q ss_pred             HHHHHHHhcCCCC
Q 009978          268 WVLVWLSATSSTP  280 (521)
Q Consensus       268 ~~i~~~~~~~~~~  280 (521)
                      ..++.+++.||++
T Consensus       449 ~~~~~~~~~~e~~  461 (479)
T PRK10077        449 AALFMWKFVPETK  461 (479)
T ss_pred             HHHHHHhccccCC
Confidence            7766666655543

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.36  E-value=3e-11  Score=118.95  Aligned_cols=150  Identities=18%  Similarity=0.121  Sum_probs=115.2

Q ss_pred             hhhhhhhhhcCCcchhhHHHHHHH-HHHHHhhhhhHHHHhHhcchHHHHHHHHHHHHHHhhhhh-c---cccchHHHHHH
Q 009978          121 AIVPLSLAHGWSRSFSGIVQSSFL-WGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPW-A---ADTSLLALLAM  195 (521)
Q Consensus       121 ~~~~~~~~~~~s~~~~g~~~s~~~-~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~l~~~-~---~~~~~~~l~~~  195 (521)
                      ..+.+.+|.|.+++++|++..... ....++.++.|++.||+|+|+.+..+.++.++..+.... .   ..++.+.++..
T Consensus       230 ~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (390)
T TIGR02718       230 LSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSC  309 (390)
T ss_pred             HhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHH
Confidence            455666778999999999988776 466777899999999999999988877665333322211 1   01334444555


Q ss_pred             HHHHhhhhcchhhHHHHHHHhcCCc-hhhHHHHHHHHhhhhhhhHHHHHHHHHhhhccCchhHHHHHHHHHHHHHH
Q 009978          196 RAVVGLAEGVALPAMNNMVARWFPQ-TERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVL  270 (521)
Q Consensus       196 r~l~G~g~~~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gw~~~f~~~~~~~~i~~i  270 (521)
                      ..+.+++.+...+...+.+.+..++ +++++.+++.+...++|..+||.++|.+.+..|++..|++.+++.++..+
T Consensus       310 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~  385 (390)
T TIGR02718       310 SAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAIL  385 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence            5666777777778888888787766 78999999999999999999999999999999999999988877666543

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PRK09952 shikimate transporter; Provisional

Probab=99.36  E-value=5.2e-11  Score=118.83  Aligned_cols=156  Identities=11%  Similarity=0.043  Sum_probs=114.1

Q ss_pred             hhhhh-hhhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHHHHHHHhhhhhc--cccchHHHHHHH
Q 009978          120 VAIVP-LSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWA--ADTSLLALLAMR  196 (521)
Q Consensus       120 ~~~~~-~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~l~~~~--~~~~~~~l~~~r  196 (521)
                      ...|. +.+++|.+......+.....+...++.++.|+++||+|||+++..+.++..++.+.+...  ..++.+.+++..
T Consensus       271 ~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (438)
T PRK09952        271 AFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSI  350 (438)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence            33444 456688888776666666677778889999999999999999888877665544333221  112344445566


Q ss_pred             HHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHH-hhhhhhhHHHHHHHHHhhhcc--CchhHHHHHHHHHHHHHHHHH
Q 009978          197 AVVGLAEGVALPAMNNMVARWFPQTERARAVAIAM-GGFTSGNAIGLVLSPILMSQA--GIFGPFVIFGLSGFLWVLVWL  273 (521)
Q Consensus       197 ~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~g~~~g~~l~~~l~~~~--gw~~~f~~~~~~~~i~~i~~~  273 (521)
                      ++.|++.+...+...+++.|.+|.+.|+.+.++.. .+..+|..++|.+.+++.+..  +|+..+...++..++..+..+
T Consensus       351 ~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~  430 (438)
T PRK09952        351 MLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTAL  430 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHH
Confidence            77788888878888999999999999998888854 445589999999999998744  488888877777776666554


Q ss_pred             Hh
Q 009978          274 SA  275 (521)
Q Consensus       274 ~~  275 (521)
                      ..
T Consensus       431 ~~  432 (438)
T PRK09952        431 LM  432 (438)
T ss_pred             Hc
Confidence            43

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.35  E-value=1.2e-10  Score=117.64  Aligned_cols=178  Identities=8%  Similarity=0.058  Sum_probs=123.3

Q ss_pred             HHHhcc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhHhHHHHHHHHHHHHHHHHHHHH-HHhcCCCcch
Q 009978          319 RLLSKM-PTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDM-LIQRGTSVTL  396 (521)
Q Consensus       319 ~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr-~~~~~~~~~~  396 (521)
                      +.+++| .++..++..++..++++.+..+++.|+++.+|++..+++..............+++|++.|| +|+|      
T Consensus        15 ~~~~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r------   88 (500)
T PRK09584         15 NAFKQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTK------   88 (500)
T ss_pred             hhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchH------
Confidence            445666 48888888888889999999999999988899999888877776665555556789999999 5988      


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHHhhhhhhhHHHHHhhhcc---chhhHHhHHHHHHHHHHHH
Q 009978          397 TRKILQSIGFIAPGIALIGLTAAK-SPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQ---YSGVLHGISNTAGTFAAIL  472 (521)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~~~g~~~~~~~~g~~~  472 (521)
                         ..+..+..+.++....+.... ......+...+.....+...+....+..+..|+   +++.+.++.+...++|..+
T Consensus        89 ---~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~  165 (500)
T PRK09584         89 ---RVIMLGAIVLAIGYALVAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFF  165 (500)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHH
Confidence               233344444444444433332 222222222222233333445555666776653   3456788899999999999


Q ss_pred             HHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHH
Q 009978          473 GTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYI  506 (521)
Q Consensus       473 ~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  506 (521)
                      +|.+.|++.+..| |+..|.+.++..+++.+.++
T Consensus       166 gp~i~g~l~~~~g-~~~~F~i~~i~~~i~~i~~~  198 (500)
T PRK09584        166 SMLATPWLAAKYG-WSVAFALSVVGMLITVVNFA  198 (500)
T ss_pred             HHHHHHHHHHhhC-HHHHHHHHHHHHHHHHHHHH
Confidence            9999999999887 99999988766666554443

>PRK10504 putative transporter; Provisional

Probab=99.35  E-value=9.9e-11  Score=118.39  Aligned_cols=174  Identities=11%  Similarity=0.045  Sum_probs=126.3

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHH
Q 009978          324 MPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQS  403 (521)
Q Consensus       324 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~  403 (521)
                      +.+|.+.+..++.......+..++|.+.++ +|.++.+.++..+...++..++.++.|++.||+|+|+         ...
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~---------~~~   79 (471)
T PRK10504         10 WQLWIVAFGFFMQSLDTTIVNTALPSMAQS-LGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRN---------IFF   79 (471)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHH---------HHH
Confidence            356777778888877888888899999987 8999999999999988999999999999999999982         222


Q ss_pred             HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhhhhhhhHHHHHhhhc-cchhhHHhHHHHHHHHHHHHHHHHHHHHhh
Q 009978          404 IGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVE  482 (521)
Q Consensus       404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~  482 (521)
                      .+..+.++..+.....++.+..++..++.+...+...+.......+..| ++++++.|+.+....+|..++|.+.|.+.+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~  159 (471)
T PRK10504         80 TAIVLFTLGSLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVE  159 (471)
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHh
Confidence            3333333333333334444444443333333333344455555566655 688999999999999999999999999999


Q ss_pred             cccchHHHHHHHHHHHHHHHHHHHHh
Q 009978          483 LVGSFQGFLLLTSLLYFLSALFYIIF  508 (521)
Q Consensus       483 ~~g~~~~~~~~~~~~~~~~~~~~~~~  508 (521)
                      ..| |+..|.+...+.+++.+.....
T Consensus       160 ~~g-w~~~f~~~~~~~~l~~~~~~~~  184 (471)
T PRK10504        160 YAS-WHWIFLINIPVGIIGAIATLML  184 (471)
T ss_pred             hcc-HHHHHHHHHHHHHHHHHHHHHh
Confidence            887 9999988777666655554444

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.35  E-value=7e-11  Score=117.22  Aligned_cols=178  Identities=14%  Similarity=0.156  Sum_probs=142.0

Q ss_pred             HHHHHHHHHHHHHHhhh-hhhhhhhhhhhhhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcch--HHHHHHHHHH
Q 009978           98 VKVVSMLALALALCNAD-RVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGK--IIMAWGVALW  174 (521)
Q Consensus        98 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr--~~~~~~~~~~  174 (521)
                      .+.+....+++++..-. ..........-.+++|++..+...+.-+..+...++++++|++.||+|.|  +++.++.+++
T Consensus       280 ~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~  359 (477)
T PF11700_consen  280 LRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILW  359 (477)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHH
Confidence            33444444444443322 33444445555668999999999999999999999999999999999999  8888888777


Q ss_pred             HHHHhhhhh--c----cccchHHHHHHHHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHh
Q 009978          175 SLATFLTPW--A----ADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPIL  248 (521)
Q Consensus       175 ~~~~~l~~~--~----~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l  248 (521)
                      .+..+...+  .    ..++.+.+++.-++.|+..|..++...++.++..|+++.+..+|++....-....+||++.+.+
T Consensus       360 ~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i  439 (477)
T PF11700_consen  360 IIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLI  439 (477)
T ss_pred             HHHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            554443333  0    0167788999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhccC-chhHHHHHHHHHHHHHHHHHHh
Q 009978          249 MSQAG-IFGPFVIFGLSGFLWVLVWLSA  275 (521)
Q Consensus       249 ~~~~g-w~~~f~~~~~~~~i~~i~~~~~  275 (521)
                      .+..| -|+.++...++.++.+++.++.
T Consensus       440 ~~~tg~~r~g~~~l~~lf~~gl~ll~~v  467 (477)
T PF11700_consen  440 TDATGSQRYGFLFLLVLFLIGLILLFFV  467 (477)
T ss_pred             HHHhCCchhHHHHHHHHHHHHHHHHhhc
Confidence            98876 8888888888777776666554

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.34  E-value=4.5e-11  Score=115.96  Aligned_cols=165  Identities=19%  Similarity=0.246  Sum_probs=121.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHH
Q 009978          330 IVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAP  409 (521)
Q Consensus       330 ~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~  409 (521)
                      ++..++...........+|.++.+.+|.+..+.+++.+...++..++.++.|++.||+|+|         ..+..+..+.
T Consensus         2 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r---------~~l~~~~~~~   72 (352)
T PF07690_consen    2 FLAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRR---------RVLIIGLLLF   72 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HH---------HHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCe---------eeEeehhhhh
Confidence            3455566666666777777566666899999999999999999999999999999999998         2334444444


Q ss_pred             HHHHHHHhccchhHHHHHHHHHHHHHHhhhhhhhHHHHHhhhcc-chhhHHhHHHHHHHHHHHHHHHHHHHHhhcccchH
Q 009978          410 GIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQ-YSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQ  488 (521)
Q Consensus       410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~  488 (521)
                      ++..+.....++.+..++..++.+...+...+....+..+..|+ +|+++.++.+....+|..++|.+.+.+.+..| ++
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~-~~  151 (352)
T PF07690_consen   73 ALGSLLLAFASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFG-WR  151 (352)
T ss_dssp             HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCH-HC
T ss_pred             hhHHHHhhhhhhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccc-cc
Confidence            44422222224444444444444444456666777777777775 99999999999999999999999999998877 88


Q ss_pred             HHHHHHHHHHHHHHHH
Q 009978          489 GFLLLTSLLYFLSALF  504 (521)
Q Consensus       489 ~~~~~~~~~~~~~~~~  504 (521)
                      ..|++.+++.+++.++
T Consensus       152 ~~~~~~~~~~~~~~il  167 (352)
T PF07690_consen  152 WAFLISAILSLIAAIL  167 (352)
T ss_dssp             CHHHHHHHHHHHHHHH
T ss_pred             cccccccchhhhhhhh
Confidence            8999988888877664

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.34  E-value=1.5e-11  Score=122.63  Aligned_cols=175  Identities=18%  Similarity=0.178  Sum_probs=152.9

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhc--chHHHHHHHHHHHH
Q 009978           99 KVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYG--GKIIMAWGVALWSL  176 (521)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~G--rr~~~~~~~~~~~~  176 (521)
                      +.+....+...+...........+|.+.++.+.+..+.+.+.++..+...++.+..|+++|+..  ++.+..++.++.++
T Consensus       298 ~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl  377 (509)
T KOG2504|consen  298 PKFLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGL  377 (509)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHH
Confidence            3445555566666666677788899999999999999999999999999999999999999988  45567788888888


Q ss_pred             HHhhhhhccccchHHHHHHHHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHhhhccC-ch
Q 009978          177 ATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAG-IF  255 (521)
Q Consensus       177 ~~~l~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g-w~  255 (521)
                      +.+.+.+.  ++++.++..-.+.|+..|.........+.|..+.++-..+.|+.....+++.++||++++++.+..| |.
T Consensus       378 ~~~~~p~~--~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~  455 (509)
T KOG2504|consen  378 ARLFLPFA--TTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYD  455 (509)
T ss_pred             HHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCee
Confidence            88888888  9999999999999999999888888899999999999999999999999999999999999988877 99


Q ss_pred             hHHHHHHHHHHHHHHHHHHh
Q 009978          256 GPFVIFGLSGFLWVLVWLSA  275 (521)
Q Consensus       256 ~~f~~~~~~~~i~~i~~~~~  275 (521)
                      ..|+..++..++..+.+++.
T Consensus       456 ~~f~~~g~~~~~s~~~~~~~  475 (509)
T KOG2504|consen  456 HAFYFCGLCFLLSAVLLLIL  475 (509)
T ss_pred             eehhhcChHHHHHHHHHHHh
Confidence            99999998887776655544

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.33  E-value=8.4e-11  Score=115.63  Aligned_cols=167  Identities=13%  Similarity=0.063  Sum_probs=119.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHH
Q 009978          331 VANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPG  410 (521)
Q Consensus       331 l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~  410 (521)
                      +..+.............|.+.++ +|.++.+.++..+...++..++.++.|++.||+++|         ..+..+.....
T Consensus        12 ~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r---------~~~~~~~~~~~   81 (385)
T TIGR00710        12 CLSILGPLGIDMYLPAFPEIAAD-LSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRR---------PVLLLGLFIFA   81 (385)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCCh---------HHHHHHHHHHH
Confidence            33333444555555667766666 899999999999999999999999999999999988         23334444444


Q ss_pred             HHHHHHhccchhHHHHHHHHHHHHHHhhhhhhhHHHHHhhhc-cchhhHHhHHHHHHHHHHHHHHHHHHHHhhcccchHH
Q 009978          411 IALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQG  489 (521)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~  489 (521)
                      +..+.....++.+...+..++.....+...+....+..+..| ++|+++.++.+....+|..++|.+.+.+.+..| ++.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~-~~~  160 (385)
T TIGR00710        82 LSSLGLALSNNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLS-WHA  160 (385)
T ss_pred             HHHHHHHHHccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-HHH
Confidence            444444444555544444334333334444555666677666 689999999999999999999999999999887 888


Q ss_pred             HHHHHHHHHHHHHHHHHHh
Q 009978          490 FLLLTSLLYFLSALFYIIF  508 (521)
Q Consensus       490 ~~~~~~~~~~~~~~~~~~~  508 (521)
                      .+++.+++.++..+..+..
T Consensus       161 ~~~~~~~~~~~~~~~~~~~  179 (385)
T TIGR00710       161 IFAFLSLAGILLSALIFFI  179 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHh
Confidence            8888777766665554443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.33  E-value=1.2e-10  Score=114.32  Aligned_cols=172  Identities=11%  Similarity=-0.069  Sum_probs=128.6

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHH
Q 009978          324 MPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQS  403 (521)
Q Consensus       324 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~  403 (521)
                      +.++.+.+..++...........+|.+.++ +|.+..+.++..+...++..++.++.|++.||+|+|         ..+.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r---------~~~~   72 (382)
T PRK10091          3 KVILSLALGTFGLGMAEFGIMGVLTELAHD-VGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLK---------HILL   72 (382)
T ss_pred             chHHHHHHHHHHHHhhHHHHHhChHHHHHH-cCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccH---------HHHH
Confidence            456667777777777777788888887766 899999999999999999999999999999999988         3344


Q ss_pred             HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhhhhhhhHHHHHhhhc-cchhhHHhHHHHHHHHHHHHHHHHHHHHhh
Q 009978          404 IGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVE  482 (521)
Q Consensus       404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~  482 (521)
                      .+....++..+.....++.+..++.-++.+...+...+.......+..+ ++|+++.+.......++..++|.+.+.+.+
T Consensus        73 ~~~~~~~~~~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~  152 (382)
T PRK10091         73 FLVALCVIGNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQ  152 (382)
T ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhh
Confidence            4555555555555556666655554444333333334444555666666 488999999999999999999999999998


Q ss_pred             cccchHHHHHHHHHHHHHHHHHHH
Q 009978          483 LVGSFQGFLLLTSLLYFLSALFYI  506 (521)
Q Consensus       483 ~~g~~~~~~~~~~~~~~~~~~~~~  506 (521)
                      ..| |+..|.+.+++.++..+..+
T Consensus       153 ~~g-wr~~f~~~~~~~~~~~~~~~  175 (382)
T PRK10091        153 EFS-WRYTFLLIAVFNIAVLASIY  175 (382)
T ss_pred             hcc-HHHHHHHHHHHHHHHHHHHH
Confidence            887 99999988877665554433

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=99.32  E-value=4.2e-10  Score=100.58  Aligned_cols=175  Identities=17%  Similarity=0.098  Sum_probs=132.5

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHHHHHH
Q 009978           98 VKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLA  177 (521)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~~~  177 (521)
                      |..+....... ......+.++...|++++.+|+|.+|...+.++..+|..+ +++.|.+.|++|++.++.+|.+...+|
T Consensus         2 W~~l~a~~~v~-~~~Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~G   79 (250)
T PF06813_consen    2 WLSLVASIWVQ-LCSGTTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVG   79 (250)
T ss_pred             hhhHHHHHHHH-HhcCcccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence            55444444444 3444667888999999999999999999999999999986 588899999999999999999999999


Q ss_pred             Hhhhhhcc-----ccchHHHHHHHHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHhhhcc
Q 009978          178 TFLTPWAA-----DTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQA  252 (521)
Q Consensus       178 ~~l~~~~~-----~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~  252 (521)
                      ..+..++.     ..++|.+.+..++.|.+.+....++.....+.|| ++||.+.|+.-...+++..+-..+...+.+.-
T Consensus        80 Y~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~~  158 (250)
T PF06813_consen   80 YGLLWLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGDD  158 (250)
T ss_pred             HHHHHHHHhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCCC
Confidence            88776653     2467888888888888877777777777788997 68999999999999999888777776665542


Q ss_pred             CchhHHHHHHHHHHHHHHHHHHh
Q 009978          253 GIFGPFVIFGLSGFLWVLVWLSA  275 (521)
Q Consensus       253 gw~~~f~~~~~~~~i~~i~~~~~  275 (521)
                      .-...+.......++.++...+.
T Consensus       159 ~~~fll~la~~~~~v~l~~~~~v  181 (250)
T PF06813_consen  159 PSSFLLFLAVLPAVVCLVAMFFV  181 (250)
T ss_pred             hHHHHHHHHHHHHHHHHHHhhhe
Confidence            23333333333333333333333

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.32  E-value=5.1e-11  Score=119.08  Aligned_cols=163  Identities=11%  Similarity=-0.033  Sum_probs=112.2

Q ss_pred             hhhhhhhhhhhh-hcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHHHH---HHHhhhhhccccchHHH
Q 009978          117 VMSVAIVPLSLA-HGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWS---LATFLTPWAADTSLLAL  192 (521)
Q Consensus       117 ~~~~~~~~~~~~-~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~---~~~~l~~~~~~~~~~~l  192 (521)
                      ......|.+.++ .|.++.+.++..+.+.++..++.++.|++.||+++++....+..+..   ++.+.+......+.+..
T Consensus       269 ~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (438)
T TIGR00712       269 GVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPAGNPLVD  348 (438)
T ss_pred             HHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcCCCchHHH
Confidence            444556666654 69999999999999999999999999999999965432222322221   22222222111234444


Q ss_pred             HHHHHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhh-hHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHH
Q 009978          193 LAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSG-NAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLV  271 (521)
Q Consensus       193 ~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g-~~~g~~l~~~l~~~~gw~~~f~~~~~~~~i~~i~  271 (521)
                      .+..++.|++.............|.+|+++|+.+.|+.+....+| ..+||.+.|.+.+..||...|++.++..++..+.
T Consensus       349 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~  428 (438)
T TIGR00712       349 MICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVIL  428 (438)
T ss_pred             HHHHHHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence            444455555433323333456789999999999999998887776 5789999999999999999999888877777766


Q ss_pred             HHHhcCCC
Q 009978          272 WLSATSST  279 (521)
Q Consensus       272 ~~~~~~~~  279 (521)
                      .+.+.+|+
T Consensus       429 ~~~~~~~~  436 (438)
T TIGR00712       429 LIVVMIGE  436 (438)
T ss_pred             HHHHHhhc
Confidence            66665554

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.32  E-value=2e-10  Score=112.90  Aligned_cols=156  Identities=12%  Similarity=-0.030  Sum_probs=115.0

Q ss_pred             HHHHHHHHHHHHHHHHhCCCcccchhHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHhc
Q 009978          339 GFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTA  418 (521)
Q Consensus       339 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  418 (521)
                      ..+.....+|.+.++ +|+++.+.++..+...++..+++++.|++.||+|||         ..+..+..+.++..+....
T Consensus        35 ~~~~~~~~l~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr---------~~~~~~~~~~~~~~~~~~~  104 (394)
T PRK10213         35 VEFLPVSLLTPMAQD-LGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRR---------YVVILFAVLLTLSCLLVSF  104 (394)
T ss_pred             HHHHHHhhHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcH---------HHHHHHHHHHHHHHHHHHH
Confidence            333444567777666 899999999999999999999999999999999998         3334444444444444444


Q ss_pred             cchhHHHHHHHHHHHHHHhhhhhhhHHHHHhhhc-cchhhHHhHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHH
Q 009978          419 AKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLL  497 (521)
Q Consensus       419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~  497 (521)
                      .++.+..++.-++.+...+...+....+..+..| ++|+++.++.....++|..++|.+.+.+.+..| |+..|++.+++
T Consensus       105 ~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~g-w~~~f~~~~~l  183 (394)
T PRK10213        105 ANSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIG-WRNVFNAAAVM  183 (394)
T ss_pred             HChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-HHHHHHHHHHH
Confidence            5556555555444444444455566666677776 689999999999999999999999999999887 99999888766


Q ss_pred             HHHHHHHH
Q 009978          498 YFLSALFY  505 (521)
Q Consensus       498 ~~~~~~~~  505 (521)
                      .+++.+..
T Consensus       184 ~~~~~l~~  191 (394)
T PRK10213        184 GVLCIFWI  191 (394)
T ss_pred             HHHHHHHH
Confidence            65544433

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.32  E-value=1.5e-10  Score=110.51  Aligned_cols=161  Identities=14%  Similarity=0.116  Sum_probs=136.3

Q ss_pred             hhhhhhhhhhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHHHHHHHhhhhhccccchHHHHHHHH
Q 009978          118 MSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRA  197 (521)
Q Consensus       118 ~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~r~  197 (521)
                      +......+-++-+.++...|.+.+...+.-++.-.+..++.+|+|.|+.++++..++.+=.++++++  ++.+.+.+.+.
T Consensus       243 f~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~--~~~~~i~~~kl  320 (412)
T PF01306_consen  243 FPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFA--TNPWVISLIKL  320 (412)
T ss_dssp             HHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT----SHHHHHHHHH
T ss_pred             HHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhh--cchHHHHHHHH
Confidence            4444444445556677789999999999999999999999999999999999999999999999999  99999999999


Q ss_pred             HHhhhhcchhhHHHHHHHhcCCchhhHHHHHHH-HhhhhhhhHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHhc
Q 009978          198 VVGLAEGVALPAMNNMVARWFPQTERARAVAIA-MGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSAT  276 (521)
Q Consensus       198 l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~-~~~~~~g~~~g~~l~~~l~~~~gw~~~f~~~~~~~~i~~i~~~~~~  276 (521)
                      +.|+-.+....+...++++.+|++-.++...+. +...++|..+.+.++|.+.++.|.+..|++.+.+.++..++..+..
T Consensus       321 LH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l  400 (412)
T PF01306_consen  321 LHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTL  400 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeee
Confidence            999999999999999999999988878888774 7889999999999999999999999999999998887777777665


Q ss_pred             CCCC
Q 009978          277 SSTP  280 (521)
Q Consensus       277 ~~~~  280 (521)
                      ++++
T Consensus       401 ~~~~  404 (412)
T PF01306_consen  401 KKDK  404 (412)
T ss_dssp             --SS
T ss_pred             cCCC
Confidence            5443

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.32  E-value=2.8e-11  Score=123.11  Aligned_cols=163  Identities=20%  Similarity=0.066  Sum_probs=108.9

Q ss_pred             hhhhhhhhhhhhhcCCcchhhH------------HHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHHHHHHHhhhhhc
Q 009978          117 VMSVAIVPLSLAHGWSRSFSGI------------VQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWA  184 (521)
Q Consensus       117 ~~~~~~~~~~~~~~~s~~~~g~------------~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~l~~~~  184 (521)
                      ......|.+.++.|.+....+.            ...+..++..++.++.++++||+|||++++++..+.+++.++.++.
T Consensus       306 ~~~~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~  385 (502)
T TIGR00887       306 GVNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFA  385 (502)
T ss_pred             ccccccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHH
Confidence            3444577777888876543221            1234445666788899999999999999988887777766555443


Q ss_pred             cc--cchHHHHHHHHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHhhhc----------c
Q 009978          185 AD--TSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQ----------A  252 (521)
Q Consensus       185 ~~--~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~----------~  252 (521)
                      ..  ++...+...-+...++.....+....+.+|.+|.+.|+++.++.+....+|.+++|.+.+.+.+.          .
T Consensus       386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  465 (502)
T TIGR00887       386 YNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGI  465 (502)
T ss_pred             HHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccc
Confidence            10  11111111111222222233456677889999999999999999999999999999999998873          3


Q ss_pred             CchhHHHHHHHHHHHHHHHHHHhcCCCC
Q 009978          253 GIFGPFVIFGLSGFLWVLVWLSATSSTP  280 (521)
Q Consensus       253 gw~~~f~~~~~~~~i~~i~~~~~~~~~~  280 (521)
                      ++...|++.+++.++..+.. ++.||++
T Consensus       466 ~~~~~~~i~~~~~~~~~i~~-~~lpEt~  492 (502)
T TIGR00887       466 WMGHVLEIFALFMFLGILFT-LLIPETK  492 (502)
T ss_pred             cchHHHHHHHHHHHHHHHHh-eEeccCC
Confidence            45667888877777665544 4556543

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=99.31  E-value=4.7e-09  Score=107.81  Aligned_cols=158  Identities=18%  Similarity=0.253  Sum_probs=128.3

Q ss_pred             hhhhhhhhhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHh-cchHHHHHHHHHHHHHHhhhhhcccc------chHH
Q 009978          119 SVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYY-GGKIIMAWGVALWSLATFLTPWAADT------SLLA  191 (521)
Q Consensus       119 ~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~-Grr~~~~~~~~~~~~~~~l~~~~~~~------~~~~  191 (521)
                      ......+.+.+|.+......+...+.....+.++++|+++|++ |+++.+.++.++..++.++.++...+      ....
T Consensus         8 aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~   87 (654)
T TIGR00926         8 TILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLL   87 (654)
T ss_pred             HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHH
Confidence            3445555667899999999999999988899999999999985 99999999999999998887664211      1234


Q ss_pred             HHHHHHHHhhhhcchhhHHHHHHHhcCCch---hhHHHHHHHHhhhhhhhHHHHHHHHHhhhcc-------CchhHHHHH
Q 009978          192 LLAMRAVVGLAEGVALPAMNNMVARWFPQT---ERARAVAIAMGGFTSGNAIGLVLSPILMSQA-------GIFGPFVIF  261 (521)
Q Consensus       192 l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~---~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~-------gw~~~f~~~  261 (521)
                      .+++-.+.++|.|+.-+...+...|.++++   +|...+.++..+.++|+++++++.+++.+..       +|...|.+.
T Consensus        88 ~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~  167 (654)
T TIGR00926        88 DLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVP  167 (654)
T ss_pred             HHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHH
Confidence            667778888999999999999999999754   4678899999999999999999999887443       699999999


Q ss_pred             HHHHHHHHHHHHHhc
Q 009978          262 GLSGFLWVLVWLSAT  276 (521)
Q Consensus       262 ~~~~~i~~i~~~~~~  276 (521)
                      ++..++.+++.....
T Consensus       168 ~i~m~ia~lvf~~g~  182 (654)
T TIGR00926       168 AILMILALIVFMAGS  182 (654)
T ss_pred             HHHHHHHHHHHHHhc
Confidence            988887776655443

>TIGR01272 gluP glucose/galactose transporter

Probab=99.31  E-value=2.5e-10  Score=107.85  Aligned_cols=159  Identities=16%  Similarity=0.139  Sum_probs=121.8

Q ss_pred             HHHHHHHHHHHhhhhhhhhhhhhhhhh---hhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHHHHHH
Q 009978          101 VSMLALALALCNADRVVMSVAIVPLSL---AHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLA  177 (521)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~~~  177 (521)
                      +.+..+..++............+.+.+   .+|.++.+.++..+.+..+..++.++.+++.||+|+||++.++..+..++
T Consensus       142 ~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~  221 (310)
T TIGR01272       142 LVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLL  221 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence            333445555555445555555555554   36999999999999999999999999999999999999998888888777


Q ss_pred             HhhhhhccccchHHHHHHHHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHhhhccCchhH
Q 009978          178 TFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGP  257 (521)
Q Consensus       178 ~~l~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gw~~~  257 (521)
                      .++....  ++... ...-++.|++.+..+|...+...+..|+ +.+.+.++. ....+|..++|++.|.+.+..|.+..
T Consensus       222 ~~l~~~~--~~~~~-~~~~~l~g~~~s~i~P~~~s~a~~~~~~-~~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a  296 (310)
T TIGR01272       222 SIGAALT--HGYVA-MWFVLALGLFNSIMFPTIFSLALNALGR-HTSQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLA  296 (310)
T ss_pred             HHHHHHc--CCHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhh-hhhhhHHHH-HHHHhcchHHHHHHHHHHHhccchHH
Confidence            7665554  43332 3355588999999999999999998864 456667775 56679999999999999999999888


Q ss_pred             HHHHHHH
Q 009978          258 FVIFGLS  264 (521)
Q Consensus       258 f~~~~~~  264 (521)
                      |++..+.
T Consensus       297 ~~v~~~~  303 (310)
T TIGR01272       297 FALPVPC  303 (310)
T ss_pred             HHHHHHH
Confidence            8754443

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.31  E-value=4.7e-11  Score=119.58  Aligned_cols=133  Identities=17%  Similarity=0.163  Sum_probs=109.4

Q ss_pred             hhhhhhhh-hcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHH
Q 009978          121 AIVPLSLA-HGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVV  199 (521)
Q Consensus       121 ~~~~~~~~-~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~r~l~  199 (521)
                      ..+.+.++ ++ ++.+.+++.++..++..++.+++|+++||+|+|+++.++.++.+++.++..+.. ++.+.+++..++.
T Consensus       244 ~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  321 (437)
T TIGR00792       244 VQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAG-SNLPLILVLIILA  321 (437)
T ss_pred             hhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcc-hhHHHHHHHHHHH
Confidence            34444443 34 566778888888999999999999999999999999999988888877766542 3566777788889


Q ss_pred             hhhhcchhhHHHHHHHhcCC-------chhhHHHHHHHHhhhhhhhHHHHHHHHHhhhccCch
Q 009978          200 GLAEGVALPAMNNMVARWFP-------QTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIF  255 (521)
Q Consensus       200 G~g~~~~~~~~~~~i~~~~~-------~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gw~  255 (521)
                      |++.+...+...++++|..|       ++++|.++|+.+....+|..+++.+.+.+.+..||.
T Consensus       322 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~~  384 (437)
T TIGR00792       322 GFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIGYV  384 (437)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            99999889999999998875       456799999999999999999999999998877763

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.31  E-value=3.3e-10  Score=114.91  Aligned_cols=173  Identities=14%  Similarity=0.054  Sum_probs=124.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHH
Q 009978          326 TWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIG  405 (521)
Q Consensus       326 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~  405 (521)
                      +..+++..++...-...+..-+|.+..+ +|.+..+.++..+.+.++..++.+..|++.||+|||         ..+..+
T Consensus         8 ~~~~~~~~~~~~ld~tiv~~a~p~i~~~-l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk---------~~l~~~   77 (495)
T PRK14995          8 LVIIVLVYIPVAIDATVLHVAAPTLSMT-LGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFK---------RLLMLG   77 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccH---------HHHHHH
Confidence            3445555666656666677788888777 899999999999999999999999999999999999         344445


Q ss_pred             HHHHHHHHHHHhccchhHHHHHHHHHHHHHHhhhhhhhHH-HHHhhhc-cchhhHHhHHHHHHHHHHHHHHHHHHHHhhc
Q 009978          406 FIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLV-NLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVEL  483 (521)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~  483 (521)
                      .....+..+.....++.+..++.-.+.+...+...+.... ...+..| ++|+++.|+......+|..+||.++|.+.++
T Consensus        78 ~~~~~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~  157 (495)
T PRK14995         78 GTLFGLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEH  157 (495)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            5555555555555566665555433333333333343333 3344444 7999999999999999999999999999999


Q ss_pred             ccchHHHHHHHHHHHHHHHHHHHHhc
Q 009978          484 VGSFQGFLLLTSLLYFLSALFYIIFS  509 (521)
Q Consensus       484 ~g~~~~~~~~~~~~~~~~~~~~~~~~  509 (521)
                      .| |++.|++...+.++..++.....
T Consensus       158 ~g-wr~~f~i~~~~~~~~~~l~~~~l  182 (495)
T PRK14995        158 FY-WGSVFLINVPIVLVVMGLTARYV  182 (495)
T ss_pred             CC-hHHHHHHHHHHHHHHHHHHHHhC
Confidence            87 99999888776666655544443

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.30  E-value=3.7e-10  Score=111.31  Aligned_cols=172  Identities=13%  Similarity=-0.019  Sum_probs=120.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHH
Q 009978          325 PTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSI  404 (521)
Q Consensus       325 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~  404 (521)
                      -+....+..+....+.......+|.+.++ +|.+..+.++..+...++..++.++.|++.||+|||         ..+..
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r---------~~l~~   73 (392)
T PRK10473          4 FLLCSFALVLLYPAGIDMYLVGLPRIAAD-LNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRK---------PVAIP   73 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCCh---------HHHHH
Confidence            33444455555556666666778887777 899999999999999999999999999999999988         23334


Q ss_pred             HHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhhhhhhhHHHHHhhhc-cchhhHHhHHHHHHHHHHHHHHHHHHHHhhc
Q 009978          405 GFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVEL  483 (521)
Q Consensus       405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~  483 (521)
                      +.....+........++.+..++..++.....+...+....+..+..| ++|+++.++.+....++..++|.+.+.+.+.
T Consensus        74 ~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~  153 (392)
T PRK10473         74 GAALFIIASLLCSLAETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLK  153 (392)
T ss_pred             HHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            444444444444444444443333333222233334445556666655 6999999999999999999999999988887


Q ss_pred             ccchHHHHHHHHHHHHHHHHHHHH
Q 009978          484 VGSFQGFLLLTSLLYFLSALFYII  507 (521)
Q Consensus       484 ~g~~~~~~~~~~~~~~~~~~~~~~  507 (521)
                      .| |+..+++.+++.++..++.+.
T Consensus       154 ~g-~~~~~~~~~~~~~i~~~~~~~  176 (392)
T PRK10473        154 FP-WQSLFYTMAAMGILVLLLSLF  176 (392)
T ss_pred             cC-hHHHHHHHHHHHHHHHHHHHH
Confidence            76 888888887776665554433

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=99.30  E-value=3.8e-09  Score=102.35  Aligned_cols=371  Identities=13%  Similarity=0.030  Sum_probs=203.6

Q ss_pred             HHHHHHHHHHHhhhhhhhhhhhhhhhhhhc-CCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHHHHHH--
Q 009978          101 VSMLALALALCNADRVVMSVAIVPLSLAHG-WSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLA--  177 (521)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~~~--  177 (521)
                      ...++...+++....-++....+.+..+.. -+---.+...-.-.+..++.++..|.+.||..|.+++..+.+..-++  
T Consensus         4 ~~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~   83 (432)
T PF06963_consen    4 LWRLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVA   83 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHH
Confidence            344567778888788888888888777663 23333444444556677788899999999999999877765543322  


Q ss_pred             --Hhhhh--hcccc-----c--hHHHHHHHHHHhhhhcc-hhhHHHHHHHhcC------CchhhHHHHHHHHhhhhhhhH
Q 009978          178 --TFLTP--WAADT-----S--LLALLAMRAVVGLAEGV-ALPAMNNMVARWF------PQTERARAVAIAMGGFTSGNA  239 (521)
Q Consensus       178 --~~l~~--~~~~~-----~--~~~l~~~r~l~G~g~~~-~~~~~~~~i~~~~------~~~~r~~~~~~~~~~~~~g~~  239 (521)
                        +.+..  +....     +  ...+++.-.+.|.-.-. ......+.=.||.      +++.+.+.++.+.-.-.+..+
T Consensus        84 ~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckl  163 (432)
T PF06963_consen   84 ASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKL  163 (432)
T ss_pred             HHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHH
Confidence              22211  11101     1  11222222222221111 1112222223443      355677888888888889999


Q ss_pred             HHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHhc----CCCCCCCCCCchhHHHHHHHhhccccccCC-------CC
Q 009978          240 IGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSAT----SSTPDRHPQISKYELEYILREKQKPLLMGN-------KH  308 (521)
Q Consensus       240 ~g~~l~~~l~~~~gw~~~f~~~~~~~~i~~i~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~  308 (521)
                      ++|++.|.+.+..+.+....+.++..++..++-+++.    +..|+-..+.++++.+...+..+.......       .+
T Consensus       164 laPl~vG~l~t~~s~~~~~~~i~~~N~~S~~vEy~~l~~VY~~~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (432)
T PF06963_consen  164 LAPLFVGLLMTFASPVIAAIFIAGWNLASVFVEYFLLARVYNSVPALAVKKRSSESESSSDEESSSESSSDPSILKRLWN  243 (432)
T ss_pred             HHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHhcCCCCCccccccccccccccccchhhHHHHHHH
Confidence            9999999999988998888888887777655433221    122211110000000000000000000000       00


Q ss_pred             CCCCCCchHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhHhHHHHHHHHHHHHHHHHHHHHHH
Q 009978          309 KPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLI  388 (521)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~  388 (521)
                      .-.....+++..+++|.++......+ .++..-++......|+.. .|+++...|..-+...+.++.+.++..++.+|+|
T Consensus       244 ~~~~~~~~w~~Y~~q~vflas~alal-LY~TVLsf~~lmt~yl~~-~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riG  321 (432)
T PF06963_consen  244 PLRTIIRGWRTYFRQPVFLASFALAL-LYFTVLSFGGLMTAYLKS-QGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIG  321 (432)
T ss_pred             HHHHHhccHHHHHhCHHHHHHHHHHH-HHHHHhcCcHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            00112344556666665554444444 444455677888899998 5999999999999999999999999999999998


Q ss_pred             hcCCCcchhHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHH-----HHHhhhhhhhHHHHHhhhccchhhHHhHHH
Q 009978          389 QRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAI-----GMKSFSHSGFLVNLQEIAPQYSGVLHGISN  463 (521)
Q Consensus       389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~  463 (521)
                      ..+.-..   ....-..++..++..+.....+........++.+.     |..++-.......+..+++++||+..|.-+
T Consensus       322 lvr~G~~---~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~  398 (432)
T PF06963_consen  322 LVRAGLW---SLWWQWVCLALCVVSFWAPGSPFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQN  398 (432)
T ss_pred             chhhHHH---HHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHH
Confidence            7632110   01111112222222222211110122222222222     222222233333344455569999999999


Q ss_pred             HHHHHHHHHHHHH
Q 009978          464 TAGTFAAILGTVG  476 (521)
Q Consensus       464 ~~~~~g~~~~~~~  476 (521)
                      ...++...+.-.+
T Consensus       399 sl~~lf~ll~~~~  411 (432)
T PF06963_consen  399 SLQSLFELLSFVL  411 (432)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999887765544

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>PRK15075 citrate-proton symporter; Provisional

Probab=99.29  E-value=1.8e-10  Score=114.92  Aligned_cols=145  Identities=17%  Similarity=0.091  Sum_probs=104.7

Q ss_pred             Hhhhhhhhhhhhhhhhhh-hcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHHHHHHHh-hh-hhcccc
Q 009978          111 CNADRVVMSVAIVPLSLA-HGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATF-LT-PWAADT  187 (521)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~-~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~-l~-~~~~~~  187 (521)
                      ............|.+.++ +|.+..+.++....+.++..++.+++|+++||+|||+++..+.++..+... .. .....+
T Consensus       250 ~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~  329 (434)
T PRK15075        250 TTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAP  329 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            333344455567776655 799999999998899999999999999999999999988776554433221 11 111113


Q ss_pred             chHHHHHHHHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHh-hhhhhhHHHHHHHHHhhhccCch
Q 009978          188 SLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMG-GFTSGNAIGLVLSPILMSQAGIF  255 (521)
Q Consensus       188 ~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~-~~~~g~~~g~~l~~~l~~~~gw~  255 (521)
                      ++..+.+..++.|++.+...+....++.|.+|+++|+.+.++... +..++..++|.+.+++.+..|++
T Consensus       330 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~~  398 (434)
T PRK15075        330 SFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTGDK  398 (434)
T ss_pred             chHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcCCc
Confidence            444444555566677666666777889999999999999998644 44445778999999999988864

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.29  E-value=1.9e-10  Score=116.93  Aligned_cols=171  Identities=15%  Similarity=0.070  Sum_probs=126.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHH
Q 009978          327 WSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGF  406 (521)
Q Consensus       327 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~  406 (521)
                      ..+.+..++............|.+.++ +|.+..+.++..+...++..++.++.|++.||+|||         ..+..+.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r---------~~~~~~~   74 (485)
T TIGR00711         5 IVLMLGTFMAVLDSTIVNVAIPTIAGD-LGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTR---------RLFLIST   74 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcH---------HHHHHHH
Confidence            344455555556666677778887777 899999999999999999999999999999999988         3344444


Q ss_pred             HHHHHHHHHHhccchhHHHHHHHHHHHHHHhhhhhhhHHHHHhhhc-cchhhHHhHHHHHHHHHHHHHHHHHHHHhhccc
Q 009978          407 IAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVG  485 (521)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g  485 (521)
                      .+..+..+.....++.+..++.-++.+...+...+....+..+..| ++|+++.++......+|..++|.+.|++.++.|
T Consensus        75 ~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~  154 (485)
T TIGR00711        75 FAFTLGSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYH  154 (485)
T ss_pred             HHHHHHHHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcC
Confidence            5555555555555555555544444444444455566666667765 699999999999999999999999999999887


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHh
Q 009978          486 SFQGFLLLTSLLYFLSALFYIIF  508 (521)
Q Consensus       486 ~~~~~~~~~~~~~~~~~~~~~~~  508 (521)
                       |+..|++.+.+.++..++....
T Consensus       155 -w~~~f~~~~~~~~~~~~~~~~~  176 (485)
T TIGR00711       155 -WRWIFLINVPIGIIVVVVAFFI  176 (485)
T ss_pred             -ceehhhhhhHHHHHHHHHHHHH
Confidence             8888888776666555544443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.29  E-value=1.7e-10  Score=114.30  Aligned_cols=156  Identities=13%  Similarity=0.028  Sum_probs=120.0

Q ss_pred             hhhhhhh-hhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHHHHHHHhhhhhcc---ccchHHHHH
Q 009978          119 SVAIVPL-SLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAA---DTSLLALLA  194 (521)
Q Consensus       119 ~~~~~~~-~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~l~~~~~---~~~~~~l~~  194 (521)
                      ....|.+ .+++|.++.+.++......++..++.++.|++.||+|+|+.+.++.++.+++.++..+..   ..+++.+++
T Consensus       235 ~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  314 (406)
T PRK15402        235 IALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLTA  314 (406)
T ss_pred             HHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHH
Confidence            3344554 466899999999988888889999999999999999999999998888777776655431   135667778


Q ss_pred             HHHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHH
Q 009978          195 MRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLS  274 (521)
Q Consensus       195 ~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gw~~~f~~~~~~~~i~~i~~~~  274 (521)
                      ..++.|++.+...+......... ++++|+++.+.++....+|..+|+.+++.+.+..++....+..++..++.+++...
T Consensus       315 ~~~~~g~g~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (406)
T PRK15402        315 GLSLYAFGIGLANAGLYRLTLFS-SDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGGNGLFNLFNLANGLLWLLLVRI  393 (406)
T ss_pred             HHHHHHHHHHHHhhhHHHHHhhh-ccccccHHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHHHHHHHH
Confidence            88899999887777666655544 45899999999999999999999999999988888776655555555544443333


Q ss_pred             h
Q 009978          275 A  275 (521)
Q Consensus       275 ~  275 (521)
                      .
T Consensus       394 ~  394 (406)
T PRK15402        394 F  394 (406)
T ss_pred             H
Confidence            3

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.29  E-value=2.7e-10  Score=110.39  Aligned_cols=159  Identities=11%  Similarity=0.003  Sum_probs=107.7

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCcccchhHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHh
Q 009978          338 WGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLT  417 (521)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (521)
                      .....+...+|.+.+| +|+++.+.+++.+.+.++..++++..|++.||+|||+         +................
T Consensus         5 ~~~~~~~~~lp~i~~~-~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~---------~~~~~~~~~~~~~~~~~   74 (368)
T TIGR00903         5 AIWVTFSPVLSLVAED-IDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRW---------FLFGSLATFAAAAGRLL   74 (368)
T ss_pred             HHHHHHHhhHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchH---------HHHHHHHHHHHHHHHHH
Confidence            3445556667777776 8999999999999999999999999999999999772         22222222222221122


Q ss_pred             ccchhHHHHHHH-HHHHHHHhhhhhhhHHHHHhhhccchhhHHhHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHH
Q 009978          418 AAKSPVMASAWL-TLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSL  496 (521)
Q Consensus       418 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~  496 (521)
                      ..++...+++.- +.+.+.. ...+......+..++++|+++.++.+....+|..+++.+.+.+.+..| |+..|++.++
T Consensus        75 ~~~~~~~l~~~R~l~G~g~~-~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~g-Wr~~f~~~~~  152 (368)
T TIGR00903        75 DPFNYEWLLACQLLAALGQP-FLLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGG-LQLLIIPIAA  152 (368)
T ss_pred             HhccHHHHHHHHHHHHhHhH-HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-hHHHHHHHHH
Confidence            212333333332 3333322 333333334444555799999999999999999999999999998887 9999999777


Q ss_pred             HHHHHHHHHHHh
Q 009978          497 LYFLSALFYIIF  508 (521)
Q Consensus       497 ~~~~~~~~~~~~  508 (521)
                      +.++..++.+..
T Consensus       153 l~~~~~~~~~~~  164 (368)
T TIGR00903       153 VAAAGIILVLAA  164 (368)
T ss_pred             HHHHHHHHHHHH
Confidence            766655544443

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK11043 putative transporter; Provisional

Probab=99.29  E-value=4e-10  Score=111.48  Aligned_cols=165  Identities=12%  Similarity=0.081  Sum_probs=109.6

Q ss_pred             HHHHHHHHHHHHHHH--HHHHhCCCcccchhHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHH
Q 009978          336 HSWGFFVILSWMPIY--FNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIAL  413 (521)
Q Consensus       336 ~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~  413 (521)
                      ....+.....+.|.+  +++.+|.++.+.++..+...++..++.++.|++.||+++|+         .+..+.....+..
T Consensus        15 ~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~---------~~~~~~~~~~~~~   85 (401)
T PRK11043         15 SMLGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKP---------VLLAGLSLFALGS   85 (401)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcH---------HHHHHHHHHHHHH
Confidence            333344444444443  44458999999999999999999999999999999999982         3333333344444


Q ss_pred             HHHhccchhHHHHHHHHHHHHHHhhhhhhhHHHHHhhhc-cchhhHHhHHHHHHHHHHHHHHHHHHHHhhcccchHHHHH
Q 009978          414 IGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLL  492 (521)
Q Consensus       414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~  492 (521)
                      +.....++.+...+..++.+...+...+.......+..| ++++...+..+....++..++|.+.+.+.+..| |+..|+
T Consensus        86 ~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g-~~~~~~  164 (401)
T PRK11043         86 LGMLWVESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFG-WQAIFA  164 (401)
T ss_pred             HHHHHhcCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-hHHHHH
Confidence            444444444444333222222222222333344555555 577888898888889999999999999999887 888888


Q ss_pred             HHHHHHHHHHHHHHHhcc
Q 009978          493 LTSLLYFLSALFYIIFST  510 (521)
Q Consensus       493 ~~~~~~~~~~~~~~~~~~  510 (521)
                      +.+++.++..+..+..++
T Consensus       165 ~~~~~~~~~~~~~~~~~~  182 (401)
T PRK11043        165 TLFAITLLLILPTLRLKP  182 (401)
T ss_pred             HHHHHHHHHHHHHHHcCC
Confidence            887777666655554443

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.28  E-value=7.2e-11  Score=115.71  Aligned_cols=151  Identities=14%  Similarity=0.011  Sum_probs=107.8

Q ss_pred             HHHHhhhhhhhhhhhhhh-hhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcc-hHHHH-HH-HHHHHHHHhhhhh
Q 009978          108 LALCNADRVVMSVAIVPL-SLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGG-KIIMA-WG-VALWSLATFLTPW  183 (521)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Gr-r~~~~-~~-~~~~~~~~~l~~~  183 (521)
                      .+.............|.+ .+++|.++.+.+++.+...++..++.++.|++.||.++ |+... .. .....++......
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (379)
T TIGR00881       225 YVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWL  304 (379)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhc
Confidence            333333333444455554 45679999999999999999999999999999998643 33222 21 1222222222222


Q ss_pred             ccccchHHHHHHHHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHhhhccCchhHH
Q 009978          184 AADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPF  258 (521)
Q Consensus       184 ~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gw~~~f  258 (521)
                      ....+.+..++..++.|+......+....++.|.+|+++|+++.|+.+....+|..++|.+.+.+.+.+||++.|
T Consensus       305 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f  379 (379)
T TIGR00881       305 NPAANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFGWAGAF  379 (379)
T ss_pred             CcchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhcccccC
Confidence            111455556666777777665656667788999999999999999999999999999999999999999998754

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.28  E-value=3.4e-10  Score=110.52  Aligned_cols=148  Identities=11%  Similarity=-0.007  Sum_probs=104.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHH
Q 009978          325 PTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSI  404 (521)
Q Consensus       325 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~  404 (521)
                      .+|..++..+........+..+.|.++++.+|+++.+.+++.+...++..++.++.|++.||+|+|+         .+..
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~---------~~~~   72 (366)
T TIGR00886         2 NLFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRY---------TTTL   72 (366)
T ss_pred             chHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchH---------HHHH
Confidence            4566677777777777788888887777779999999999999999999999999999999999882         3334


Q ss_pred             HHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHHhhhhhhhHHHHHhhhc-cchhhHHhHHHHHHHHHHHHHHHHHHHHhh
Q 009978          405 GFIAPGIALIGLTAAK-SPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVE  482 (521)
Q Consensus       405 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~  482 (521)
                      +.+...+..+.....+ +.+..++..++.+...+. ......+..+..| ++|+++.++.....++|..+++.+.+.+.+
T Consensus        73 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~  151 (366)
T TIGR00886        73 SLLLLAIPCLWAGLAVQSYSVLLLLRLFIGIAGGS-FASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIG  151 (366)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhchh-hHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            4444444444444444 444443333322222222 2334455566665 689999999998888888888888777665

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.27  E-value=5.5e-10  Score=110.53  Aligned_cols=169  Identities=13%  Similarity=0.053  Sum_probs=117.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHH
Q 009978          328 SIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFI  407 (521)
Q Consensus       328 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~  407 (521)
                      ...+.+++.+..........| .+++.+|++..+.++..+...++..++++..|++.||+|+|         ..+..+.+
T Consensus        12 ~~~~~~~~~~~d~~~~~~~~~-~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r---------~~~~~~~~   81 (412)
T TIGR02332        12 FLFILFIFSFLDRINIGFAGL-TMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGAR---------RWIAGIMV   81 (412)
T ss_pred             HHHHHHHHHHhhhhhHHHHHH-hhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChH---------HHHHHHHH
Confidence            334444443444444445555 55666999999999999999999999999999999999998         33444444


Q ss_pred             HHHHHHHHHhccchhHHHHHHHHHHHHHHhhhhhhhHHHHHhhhc-cchhhHHhHHHHHHHHHHHHHHHHHHHHhhc---
Q 009978          408 APGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVEL---  483 (521)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~---  483 (521)
                      +.++..+.....++.+.+++.-++.+...+...+....+..+..| ++|+++.|+++....+|..+++.+.+++.+.   
T Consensus        82 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~  161 (412)
T TIGR02332        82 LWGIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGL  161 (412)
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            445454544455555544444333333333344555566677766 5899999999999999999999999988752   


Q ss_pred             ---ccchHHHHHHHHHHHHHHHHHHHH
Q 009978          484 ---VGSFQGFLLLTSLLYFLSALFYII  507 (521)
Q Consensus       484 ---~g~~~~~~~~~~~~~~~~~~~~~~  507 (521)
                         .| |+..|++.++..++..++.++
T Consensus       162 ~~~~g-wr~~f~~~~~~~l~~~~~~~~  187 (412)
T TIGR02332       162 MALKG-WQWLFLLEGFPSVILGVMTWF  187 (412)
T ss_pred             CCccc-hhHHHHHHHHHHHHHHHHHhh
Confidence               35 999999887776655444433

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.25  E-value=4.9e-10  Score=112.67  Aligned_cols=175  Identities=13%  Similarity=0.083  Sum_probs=125.0

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhHhHHHHHHHHHHHHHHHHHHHH-HHhcCCCcchhHHHHH
Q 009978          324 MPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDM-LIQRGTSVTLTRKILQ  402 (521)
Q Consensus       324 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr-~~~~~~~~~~~~~~~~  402 (521)
                      |.++.++...+...++++++..+++.|+++.+|++..+++++...+.....+..+++|+++|| +|||         ..+
T Consensus        14 ~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r---------~~~   84 (489)
T PRK10207         14 RPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTK---------RTI   84 (489)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchH---------HHH
Confidence            456677777788889999999999999999899999999888888887788888899999999 8999         233


Q ss_pred             HHHHHHHHHHHHHHhccch-hHHHHHHHHHHHHHHhhhhhhhHHHHHhhhc-c--chhhHHhHHHHHHHHHHHHHHHHHH
Q 009978          403 SIGFIAPGIALIGLTAAKS-PVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-Q--YSGVLHGISNTAGTFAAILGTVGAG  478 (521)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~g~~~g~~~~~~~~g~~~~~~~~g  478 (521)
                      ..+.++..+..+......+ ....++...+.....+...+.......+..| +  +|+.++++.+...++|..+||.+.|
T Consensus        85 ~~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g  164 (489)
T PRK10207         85 VLGAIVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAP  164 (489)
T ss_pred             HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHH
Confidence            4444444444433333322 2222222233233334444555666677665 3  4577899999999999999999999


Q ss_pred             HHhhcccchHHHHHHHHHHHHHHHHHHHHh
Q 009978          479 FFVELVGSFQGFLLLTSLLYFLSALFYIIF  508 (521)
Q Consensus       479 ~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  508 (521)
                      ++.++.| |+..|++.++..+++.+.+...
T Consensus       165 ~l~~~~g-w~~~F~i~~i~~~~~~~~~~~~  193 (489)
T PRK10207        165 VIADKFG-YSVTYNLCGAGLIIALLVYFAC  193 (489)
T ss_pred             HHHHhhC-hHHHHHHHHHHHHHHHHHHHHc
Confidence            9999987 9999988766555555554443

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.25  E-value=4e-10  Score=111.37  Aligned_cols=149  Identities=17%  Similarity=0.125  Sum_probs=108.2

Q ss_pred             hhhhhhhhcCCcchhhHHHHHH-HHHHHHhhhhhHHHHhHhcchHHHHHHHHHHHHHHhhh---hhccccchHHHHHHH-
Q 009978          122 IVPLSLAHGWSRSFSGIVQSSF-LWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLT---PWAADTSLLALLAMR-  196 (521)
Q Consensus       122 ~~~~~~~~~~s~~~~g~~~s~~-~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~l~---~~~~~~~~~~l~~~r-  196 (521)
                      .+.+.+++|.++.++|++.+.. .++..++.+++|++.||+|+|+.+.++.++..+..+..   ++.. ++.+.+++.- 
T Consensus       233 ~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~-~~~~~~~~~~~  311 (402)
T PRK11902        233 TTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTP-KHLWTMALAIG  311 (402)
T ss_pred             HHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcC-CcHHHHHHHHH
Confidence            3456677899999999998665 45688999999999999999998877776665554333   2321 3455555444 


Q ss_pred             ---HHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHH
Q 009978          197 ---AVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWL  273 (521)
Q Consensus       197 ---~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gw~~~f~~~~~~~~i~~i~~~  273 (521)
                         +..|++.+...+....++.+.+|.+++    ++.+...++|..+++.++|.+.+.+||+..|.+.++++++..++.+
T Consensus       312 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~~  387 (402)
T PRK11902        312 IENLCGGMGTAAFVALLMALCNRSFSATQY----ALLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALLW  387 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCcHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence               345566666677777777777775544    5555556777777777899999999999999999888877665554


Q ss_pred             Hh
Q 009978          274 SA  275 (521)
Q Consensus       274 ~~  275 (521)
                      ..
T Consensus       388 ~~  389 (402)
T PRK11902        388 LM  389 (402)
T ss_pred             HH
Confidence            43

>TIGR00898 2A0119 cation transport protein

Probab=99.25  E-value=9.4e-11  Score=119.69  Aligned_cols=149  Identities=19%  Similarity=0.101  Sum_probs=112.5

Q ss_pred             hhhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhhhc
Q 009978          125 LSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEG  204 (521)
Q Consensus       125 ~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~r~l~G~g~~  204 (521)
                      ..++++.+..   +......+...++.++.+++.||+|||+.+.++.++.+++.++..+....+.+..++..++.+++.+
T Consensus       349 ~~~~~~~~~~---~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  425 (505)
T TIGR00898       349 DLGNLGGNIY---LDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGIT  425 (505)
T ss_pred             cccccCCChH---HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHH
Confidence            3344454432   3333455667788889999999999999999999988888877776622222455555667777777


Q ss_pred             chhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHhcCCC
Q 009978          205 VALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSST  279 (521)
Q Consensus       205 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gw~~~f~~~~~~~~i~~i~~~~~~~~~  279 (521)
                      ...+....+..|.+|++.|+.++|+.+....+|.+++|.+.+ + ...++...+++.++..++..+..++ .||+
T Consensus       426 ~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~-lpet  497 (505)
T TIGR00898       426 SAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-L-GEKWLFLPLVLFGGLALLAGILTLF-LPET  497 (505)
T ss_pred             HHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-H-HHHHHhhHHHHHHHHHHHHHHHHHc-CcCC
Confidence            778888999999999999999999999999999999999998 4 4456777888888777776665544 3443

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.24  E-value=1.3e-09  Score=109.88  Aligned_cols=161  Identities=11%  Similarity=0.089  Sum_probs=105.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCcccchhHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHH
Q 009978          337 SWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGL  416 (521)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  416 (521)
                      ....+....+.|.+.++ +|++..+.++..+...++..++.++.|++.||+|+|         ..+..+.+..++..+..
T Consensus        49 ~~~~~~~~~~~~~l~~~-~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r---------~~~~~~~~~~~~~~~~~  118 (476)
T PLN00028         49 FVSTFAAAPLLPIIRDN-LNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPR---------YGSAFLLMLTAPAVFCM  118 (476)
T ss_pred             HHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCh---------HHHHHHHHHHHHHHHHH
Confidence            33344445555555554 899999999998888899999999999999999998         23333444444444444


Q ss_pred             hccchhHHHHHH-HHHHHHHHhhhhhhhHHHHHhhhc-cchhhHHhHHHHHHHHHHHHHHHHHHHHhh----c-----cc
Q 009978          417 TAAKSPVMASAW-LTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVE----L-----VG  485 (521)
Q Consensus       417 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~----~-----~g  485 (521)
                      ...++....++. ++.+.+.. ... ....+..+..| ++||.+.|+.+...++|..+++.+.+.+.+    .     .|
T Consensus       119 ~~~~s~~~l~~~r~l~G~~~~-~~~-~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~g  196 (476)
T PLN00028        119 SLVSSATGFIAVRFFIGFSLA-TFV-SCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTA  196 (476)
T ss_pred             HHhcCHHHHHHHHHHHHHHHH-hhH-HHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhh
Confidence            444444444333 22333322 222 23334556666 689999999998888888888777665533    1     24


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHhcc
Q 009978          486 SFQGFLLLTSLLYFLSALFYIIFST  510 (521)
Q Consensus       486 ~~~~~~~~~~~~~~~~~~~~~~~~~  510 (521)
                       |+..|++.+++.++..++.+++.+
T Consensus       197 -Wr~~f~i~g~l~l~~~l~~~~~~~  220 (476)
T PLN00028        197 -WRIAFFVPGLLHIIMGILVLTLGQ  220 (476)
T ss_pred             -hHHHHHHHHHHHHHHHHHHHHHcC
Confidence             899999988877766665555543

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.24  E-value=4.3e-10  Score=110.27  Aligned_cols=158  Identities=11%  Similarity=0.073  Sum_probs=115.3

Q ss_pred             HHHHHHHHHHHHHHHHhCCCcccchhHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHhc
Q 009978          339 GFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTA  418 (521)
Q Consensus       339 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  418 (521)
                      +...+...+|.+.++ +|+++.+.++..+...++..++.++.|++.||++||         ..+..+....++.......
T Consensus         6 ~~~~~~p~~~~~~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~---------~~~~~~~~~~~i~~~~~~~   75 (377)
T PRK11102          6 AIDMYLPALPVIAAD-FGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRK---------PVILGGTLVFALAAVACAL   75 (377)
T ss_pred             HHHHHhccHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCCh---------HHHHHHHHHHHHHHHHHHH
Confidence            344556778888877 899999999999999999999999999999999988         3334444444444444444


Q ss_pred             cchhHHHHHHHHHHHHHHhhhhhhhHHHHHhhhc-cchhhHHhHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHH
Q 009978          419 AKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLL  497 (521)
Q Consensus       419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~  497 (521)
                      .++.+......++.....+...+....+..+..| ++|+++.++.+....+|..++|.+.+.+.+..| ++..|++.+++
T Consensus        76 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-~~~~~~~~~~~  154 (377)
T PRK11102         76 AQTIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFS-WHAIFWVLALA  154 (377)
T ss_pred             HccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-hHHHHHHHHHH
Confidence            4454444444444333344444555566666666 689999999999999999999999999999887 88888887777


Q ss_pred             HHHHHHHHHH
Q 009978          498 YFLSALFYII  507 (521)
Q Consensus       498 ~~~~~~~~~~  507 (521)
                      .++..++...
T Consensus       155 ~~~~~~~~~~  164 (377)
T PRK11102        155 AILAAALVFF  164 (377)
T ss_pred             HHHHHHHHHH
Confidence            6665554433

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.24  E-value=6.1e-10  Score=109.47  Aligned_cols=172  Identities=15%  Similarity=0.062  Sum_probs=117.3

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHH
Q 009978          323 KMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQ  402 (521)
Q Consensus       323 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~  402 (521)
                      +|.++.+.+..++...+........+.+..+ ++.++.+.++..+.+.+...+..++.|++.||++||+.         +
T Consensus         2 ~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~v---------l   71 (393)
T PRK11195          2 SKGFYAIMAAQFFSALADNALLFAAIALLKE-LHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRV---------M   71 (393)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchh---------h
Confidence            4567777777777777666666666666655 78888889999999999999999999999999999942         2


Q ss_pred             HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhhhhhhhHHHHHhhhc-cchhhHHhHHHHHHHHHHHHHHHHHHHHh
Q 009978          403 SIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFV  481 (521)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~  481 (521)
                      ..+..+.++..+......+.   +..-++.+...+...+....+..+..| ++|++++|+......++..+||.++|.+.
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~  148 (393)
T PRK11195         72 FIANGIKLLGCLLMLFGIHP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALA  148 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22222222222222222222   222223334445556666777777776 69999999999999999999999999999


Q ss_pred             hcccchHHHHHHHHHHHHHHHHHHHHhc
Q 009978          482 ELVGSFQGFLLLTSLLYFLSALFYIIFS  509 (521)
Q Consensus       482 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~  509 (521)
                      +..  +...+.+.+.+.+++.+....++
T Consensus       149 ~~~--~~~~~~i~~~~~~~~~~~~~~l~  174 (393)
T PRK11195        149 DPH--AEAALAVCALIYLLAALFNLFIP  174 (393)
T ss_pred             HHH--HHHHHHHHHHHHHHHHHHHhcCC
Confidence            863  56666655555444444444444

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.24  E-value=7.3e-10  Score=107.86  Aligned_cols=168  Identities=17%  Similarity=0.205  Sum_probs=129.6

Q ss_pred             HHhhhhhhhhhhhhhhhhhhc-CCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHHHHHHHhhhhhccccc
Q 009978          110 LCNADRVVMSVAIVPLSLAHG-WSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTS  188 (521)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~l~~~~~~~~  188 (521)
                      +.......+....+.+.++.| .+....+.+.++..++-.+.-...+++..|+|.|+++.++.+..++=..+++... ++
T Consensus       218 l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~-~~  296 (400)
T PF03825_consen  218 LIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFS-DP  296 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhc-CC
Confidence            334444455556666777777 6777888888888888888889999999999999999999999988887777652 23


Q ss_pred             hHH----HHHHHHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHh-hhhhhhHHHHHHHHHhhhccCch------hH
Q 009978          189 LLA----LLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMG-GFTSGNAIGLVLSPILMSQAGIF------GP  257 (521)
Q Consensus       189 ~~~----l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~-~~~~g~~~g~~l~~~l~~~~gw~------~~  257 (521)
                      .+.    .++...++|+..+....+...++.+..|++.|+++.++++. ..++|..+|..++|++.+++|-+      ..
T Consensus       297 ~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~  376 (400)
T PF03825_consen  297 WPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAV  376 (400)
T ss_pred             cHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHH
Confidence            232    23345679999999999999999999999999999999876 46899999999999999987744      45


Q ss_pred             HHHHHHHHHHHHHHHHHhcCC
Q 009978          258 FVIFGLSGFLWVLVWLSATSS  278 (521)
Q Consensus       258 f~~~~~~~~i~~i~~~~~~~~  278 (521)
                      +.+.+++.++..++.+.+.+|
T Consensus       377 ~~v~a~~~~~~~~~f~~~fk~  397 (400)
T PF03825_consen  377 FLVFAVMALVILVLFVILFKP  397 (400)
T ss_pred             HHHHHHHHHHHHHHHHhhccC
Confidence            555566555555555554443

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.22  E-value=8.5e-10  Score=110.09  Aligned_cols=157  Identities=17%  Similarity=0.079  Sum_probs=100.9

Q ss_pred             hhhhhhhhhh-hhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHHHHHHHhhhh--hccccchHHHH
Q 009978          117 VMSVAIVPLS-LAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTP--WAADTSLLALL  193 (521)
Q Consensus       117 ~~~~~~~~~~-~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~l~~--~~~~~~~~~l~  193 (521)
                      .+...+|.+. +++|.+..+.++..++..++..+++++.|+++||+|||+.+.++.++.++......  ....++....+
T Consensus       261 ~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (432)
T PRK10406        261 TFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAF  340 (432)
T ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHH
Confidence            3444566654 56899999999998888888889999999999999999988776654433332111  11012333222


Q ss_pred             HHHHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhh-hhHHHHHHHHHhhhccC-chhHHHHHHHHHHHHHHH
Q 009978          194 AMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTS-GNAIGLVLSPILMSQAG-IFGPFVIFGLSGFLWVLV  271 (521)
Q Consensus       194 ~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~~g~~l~~~l~~~~g-w~~~f~~~~~~~~i~~i~  271 (521)
                      ..-.+.+++.+...+....+++|++|++.|+.+.|+.+...++ .....|.+.+.+ +..| |...++..++..++..+.
T Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l-~~~g~~~~~~~~~~~~~~i~~~~  419 (432)
T PRK10406        341 GLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSL-KSIGMETAFFWYVTLMAVVAFLV  419 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHH-HHhCCCcHHHHHHHHHHHHHHHH
Confidence            2222232333344455678899999999999999998766554 344577777755 4445 555566555555555544


Q ss_pred             HHH
Q 009978          272 WLS  274 (521)
Q Consensus       272 ~~~  274 (521)
                      .++
T Consensus       420 ~~~  422 (432)
T PRK10406        420 SLM  422 (432)
T ss_pred             HHH
Confidence            444

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.21  E-value=3.1e-10  Score=106.12  Aligned_cols=174  Identities=17%  Similarity=0.106  Sum_probs=135.7

Q ss_pred             HHHHHHHHHHHhhhhhhhhhhhhhh-hhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHHHHHHHh
Q 009978          101 VSMLALALALCNADRVVMSVAIVPL-SLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATF  179 (521)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~  179 (521)
                      .+.+++.++..+...-.++..+|.+ .++++.++.+.|...+.+.+...+..+.+|+++||+|.+|++......++++..
T Consensus       220 ~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~  299 (417)
T COG2223         220 TWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAA  299 (417)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHH
Confidence            3344555565555555677777765 556999999999999999999999999999999999999999999988888887


Q ss_pred             hhhhcc-----ccchHHHHHHHHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHhhhccC-
Q 009978          180 LTPWAA-----DTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAG-  253 (521)
Q Consensus       180 l~~~~~-----~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g-  253 (521)
                      +..+..     ..+....+..-+..++..|.....++.++..++| ++-|.+.|+.....++|...-|..-+...+..| 
T Consensus       300 ~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~-~~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~  378 (417)
T COG2223         300 LLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFP-KETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGS  378 (417)
T ss_pred             HHHccccccccCcchHHHHHHHHHHHHHhccCcchheeechHHHH-hhhhHHHHHHHHhccccccchhHHHHHHHHhccc
Confidence            766652     1234444444444455555555567888999986 588999999999999999999999888888777 


Q ss_pred             chhHHHHHHHHHHHHHHHHHHh
Q 009978          254 IFGPFVIFGLSGFLWVLVWLSA  275 (521)
Q Consensus       254 w~~~f~~~~~~~~i~~i~~~~~  275 (521)
                      +...|++.....+++.+..+..
T Consensus       379 ~~~~f~~~~~~~~~a~v~~~~~  400 (417)
T COG2223         379 YTGAFMLLLAFYLVALVLTWAL  400 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            8899999988888877765544

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.21  E-value=1.3e-09  Score=107.45  Aligned_cols=166  Identities=11%  Similarity=0.000  Sum_probs=111.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHH
Q 009978          328 SIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFI  407 (521)
Q Consensus       328 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~  407 (521)
                      ...+..++...........+|.+.++ +|.++.+.++..+...++..++.++.|+++||+|||+         .+..+..
T Consensus        12 ~~~~~~~~~~~~~~~~~p~~~~i~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~---------~~~~~~~   81 (394)
T PRK11652         12 MLVLLVAVGQMAQTIYVPAIADMARD-LNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRP---------VILVGMS   81 (394)
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChH---------HHHHHHH
Confidence            33344444444445555566777766 8999999999999999999999999999999999982         2333333


Q ss_pred             HHHHHHHHHhccchhHHHHHHHHHHHHHHhhhhhhhHHHHHhhhc-cchhhHHhHHHHHHHHHHHHHHHHHHHHhhcccc
Q 009978          408 APGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGS  486 (521)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~  486 (521)
                      ...+..+.....++.+..++..++.....+...+.......+..+ ++++.+.+..+....++..++|.+.+.+.+..| 
T Consensus        82 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g-  160 (394)
T PRK11652         82 IFILGTLVALFAHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFG-  160 (394)
T ss_pred             HHHHHHHHHHHHccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-
Confidence            334433333344444444333333222222333333444455555 688899999999999999999999999998877 


Q ss_pred             hHHHHHHHHHHHHHHHHH
Q 009978          487 FQGFLLLTSLLYFLSALF  504 (521)
Q Consensus       487 ~~~~~~~~~~~~~~~~~~  504 (521)
                      |+..|.+.+++.++..+.
T Consensus       161 ~~~~f~~~~~~~~~~~~~  178 (394)
T PRK11652        161 WRACYLFLLLLGAGVTFS  178 (394)
T ss_pred             hHHHHHHHHHHHHHHHHH
Confidence            888888877665544443

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.21  E-value=2.6e-08  Score=96.36  Aligned_cols=316  Identities=14%  Similarity=0.050  Sum_probs=183.6

Q ss_pred             HHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhhhcchhhHHHHHHHhcCC
Q 009978          140 QSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFP  219 (521)
Q Consensus       140 ~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~  219 (521)
                      .++......+++++.+.+.|+.|.|+.+.++...+....+.+.+   .|-+.++++-.+.|+|.+..+.....++.+..+
T Consensus        56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~---~N~y~~yfssallG~Gaallw~GqG~ylt~~st  132 (461)
T KOG3098|consen   56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLF---PNSYYLYFSSALLGFGAALLWTGQGGYLTSNST  132 (461)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHh---cchHHHHHHHHHhhhhHHheecccceehhhcCC
Confidence            66777888899999999999999999999999999888777665   577888899999999999999999999999999


Q ss_pred             chhhHHHHHHHHhhhhhhhHHHHHHHHHhhhcc--------Cch-h----------HHHHHHHHHHHHHHHHHHhcCCCC
Q 009978          220 QTERARAVAIAMGGFTSGNAIGLVLSPILMSQA--------GIF-G----------PFVIFGLSGFLWVLVWLSATSSTP  280 (521)
Q Consensus       220 ~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~--------gw~-~----------~f~~~~~~~~i~~i~~~~~~~~~~  280 (521)
                      ++.+.+..++.......+.++|..+...+...-        +-+ .          ...+.+++..+..+...-.. ..|
T Consensus       133 ~~tie~Nisi~Wai~~~~li~Ggi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~~~~~l~~i~~~-~~p  211 (461)
T KOG3098|consen  133 RETIERNISIFWAIGQSSLIIGGIILFIYFQFSSSSAIITDGTRRLVFEVLFIDFEIKVLFGVLLAISVLSIINFD-FLP  211 (461)
T ss_pred             hhhHHHHHHHHHHHHHHHHHhhhHhheeeeEecccccccccchhhhhcchhhhhHHHHHHHHHHHHHHHHHhhhee-ecC
Confidence            999999999999999998888876654442211        111 0          11111111111111111111 111


Q ss_pred             CCCCCCchhHHHHHHHhhccccccCCCCCCCCCCchHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--C
Q 009978          281 DRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHI--D  358 (521)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~--~  358 (521)
                      .+...   .+.+            ..+....+..+..-+++++|+.+.+....+........+....|..+.-....  +
T Consensus       212 ~~~~~---~~~~------------~~~~~~~~~l~~~~~l~~~~~ml~L~~~f~~tG~~~Sf~~~iypt~i~ft~~~~~n  276 (461)
T KOG3098|consen  212 SKDVV---NCKS------------SSETSFSELLKLTFKLLKTPKMLLLFPFFFYTGLETSFWISIYPTCISFTRKLGSN  276 (461)
T ss_pred             ccchh---hhhh------------hccccHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHhccchhhhhhhhccCc
Confidence            11000   0000            00000001112233556677777776666655555444555555544432122  2


Q ss_pred             c-ccchhHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHH--Hhcc-c--------------
Q 009978          359 L-RQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIG--LTAA-K--------------  420 (521)
Q Consensus       359 ~-~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~--------------  420 (521)
                      . ...+......+++..++....+.+.+|..+.+..      ..+.++..+.....++  +... +              
T Consensus       277 ~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~------~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~  350 (461)
T KOG3098|consen  277 TTYLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRK------PTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFT  350 (461)
T ss_pred             chhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccC------cchhHHHHHHHHHHHHHhccccccCCCCCCcccccccc
Confidence            1 2234444455666666667777777776655322      2222222222222211  1111 0              


Q ss_pred             -hhHHHHHHHHHHHHHHhhhhhhhHHHHHhhhccchhhHHhHHHHHHHHHHHHHHHHHHHH
Q 009978          421 -SPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFF  480 (521)
Q Consensus       421 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l  480 (521)
                       ......+..++.+..-.......+.+...+.|++|.++.++.-.-..++..++-......
T Consensus       351 ~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~~~~~~~~fsi~kfyq~~~s~v~~f~~~~~  411 (461)
T KOG3098|consen  351 PSYYLALIIGFLLGFGDACFNTQRYVIIALLYPDDRAQAFSLFKFYQSVASCVAFFFSPYL  411 (461)
T ss_pred             cchhHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence             111222222333333445556667777888899999999888888877777666555443

>TIGR00896 CynX cyanate transporter

Probab=99.21  E-value=6.4e-10  Score=108.01  Aligned_cols=135  Identities=17%  Similarity=0.080  Sum_probs=108.2

Q ss_pred             hhhhhhhhhhhhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHh-cchHHHHHHHHHHHHHHhhhhhccccchHHHHH
Q 009978          116 VVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYY-GGKIIMAWGVALWSLATFLTPWAADTSLLALLA  194 (521)
Q Consensus       116 ~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~-Grr~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~  194 (521)
                      .......|.+.++.|.+..+.+.+.+...++..++.++.|++.||+ +||+.+.++.++.+++.+++.+.  ++..... 
T Consensus       214 ~~~~~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-  290 (355)
T TIGR00896       214 YSLIGWLPAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFA--PMHGLWA-  290 (355)
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHh--hhhHHHH-
Confidence            3444567777788899999999999999999999999999999999 56667777878787777766665  3322222 


Q ss_pred             HHHHHhhhhcchhhHHHHHHHhcCC-chhhHHHHHHHHhhhhhhhHHHHHHHHHhhhccC
Q 009978          195 MRAVVGLAEGVALPAMNNMVARWFP-QTERARAVAIAMGGFTSGNAIGLVLSPILMSQAG  253 (521)
Q Consensus       195 ~r~l~G~g~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g  253 (521)
                      ..++.|++.+...+...+.+.+..+ +++++...++.+....+|..++|.+.+++.++.|
T Consensus       291 ~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g  350 (355)
T TIGR00896       291 WALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISG  350 (355)
T ss_pred             HHHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4567899999888888777766554 5667899999998899999999999999998776

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.20  E-value=1.9e-09  Score=106.75  Aligned_cols=157  Identities=14%  Similarity=0.027  Sum_probs=110.9

Q ss_pred             HHHHHHHHHHHHHHHHhCCCcccchhHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHhc
Q 009978          339 GFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTA  418 (521)
Q Consensus       339 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  418 (521)
                      .......-+|.+.++ +|.+..+.++..+.+.++..++.++.|+++||+|||+         ++..+..+.++..+....
T Consensus        31 ~~~~~~p~l~~i~~~-~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~---------~l~~~~~~~~~~~~~~~~  100 (413)
T PRK15403         31 TTDLIQPGIINVVRD-FNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRP---------VLITGALIFTLACAATLF  100 (413)
T ss_pred             HHHhhccCHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchH---------HHHHHHHHHHHHHHHHHH
Confidence            334444455555444 8999999999999999999999999999999999992         333344444444444444


Q ss_pred             cchhHHHHHHHHHHHHHHhhhhhhhHHHHHhhhc-cchhhHHhHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHH
Q 009978          419 AKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLL  497 (521)
Q Consensus       419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~  497 (521)
                      .++.+..++.-++.+...+...+.......+..| ++++++.++.+....++..+||.+++.+.+..| |+..|++.+++
T Consensus       101 a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~g-w~~~f~~~~~~  179 (413)
T PRK15403        101 TTSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVH-WKVLFAIIAVM  179 (413)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-HHHHHHHHHHH
Confidence            5555544444333222223333444556666766 578999999999999999999999999998877 99999988887


Q ss_pred             HHHHHHHHH
Q 009978          498 YFLSALFYI  506 (521)
Q Consensus       498 ~~~~~~~~~  506 (521)
                      .+++.+..+
T Consensus       180 ~~i~~~~~~  188 (413)
T PRK15403        180 GLIAFVGLL  188 (413)
T ss_pred             HHHHHHHHH
Confidence            776665443

>PRK09848 glucuronide transporter; Provisional

Probab=99.19  E-value=7.1e-10  Score=111.24  Aligned_cols=138  Identities=19%  Similarity=0.146  Sum_probs=109.4

Q ss_pred             hhhhhhhhhhh-hhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHHHHHHHhhhhhccccchHHHHHH
Q 009978          117 VMSVAIVPLSL-AHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAM  195 (521)
Q Consensus       117 ~~~~~~~~~~~-~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~  195 (521)
                      ......|.+.+ .+|.++...++......++..++.++++++.||+|+|+++.++.++.+++.++..+....+++.+++.
T Consensus       246 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~  325 (448)
T PRK09848        246 AVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVA  325 (448)
T ss_pred             HHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHH
Confidence            34444555544 46766655555555556778889999999999999999999999988888777766533467777778


Q ss_pred             HHHHhhhhcchhhHHHHHHHhcCCch-------hhHHHHHHHHhhhhhhhHHHHHHHHHhhhccCc
Q 009978          196 RAVVGLAEGVALPAMNNMVARWFPQT-------ERARAVAIAMGGFTSGNAIGLVLSPILMSQAGI  254 (521)
Q Consensus       196 r~l~G~g~~~~~~~~~~~i~~~~~~~-------~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gw  254 (521)
                      .++.|+|.+...+...++.+|..|.+       ++|..+|+.+....+|..+|+.+.+.+.+..|+
T Consensus       326 ~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G~  391 (448)
T PRK09848        326 LAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSGY  391 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            88999999999999999999988754       358999999999999999999999998876665

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.17  E-value=6.2e-10  Score=108.56  Aligned_cols=185  Identities=16%  Similarity=0.113  Sum_probs=139.9

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHHHHHH
Q 009978           98 VKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLA  177 (521)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~~~  177 (521)
                      +.....+.+......-..+........+.++-|++..+..++.....+...+..+++..+.||+|||+.++.+..++.+.
T Consensus       269 ~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~  348 (485)
T KOG0569|consen  269 RPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVA  348 (485)
T ss_pred             HHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence            33333434444444444456667777888999999999999999999999999999999999999999999999998888


Q ss_pred             Hhhhhhcc--ccch--H---HHHHHHHHHhhhhc-chhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHhh
Q 009978          178 TFLTPWAA--DTSL--L---ALLAMRAVVGLAEG-VALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILM  249 (521)
Q Consensus       178 ~~l~~~~~--~~~~--~---~l~~~r~l~G~g~~-~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~  249 (521)
                      .+++....  ....  |   ..+++.++..++.+ +..|...-+.+|.+|++.|..++++......+...+-...-..+.
T Consensus       349 ~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~  428 (485)
T KOG0569|consen  349 LLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQ  428 (485)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77655431  0111  1   12333344333333 236788999999999999999999999988888888777777777


Q ss_pred             hccCchhHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 009978          250 SQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRH  283 (521)
Q Consensus       250 ~~~gw~~~f~~~~~~~~i~~i~~~~~~~~~~~~~  283 (521)
                      +.+|- +.|+...+.+++..+..++..||++.+.
T Consensus       429 ~~~g~-~~filF~i~~~~~~i~~~~~lPETkgr~  461 (485)
T KOG0569|consen  429 NVIGP-YVFILFVIPLAIFLIYLYRYLPETKGRT  461 (485)
T ss_pred             HHhcc-hhhHHHHHHHHHHHHHHHHhCcccCCCC
Confidence            77776 7888888888888888888888876543

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=99.17  E-value=5.8e-08  Score=92.43  Aligned_cols=324  Identities=12%  Similarity=0.091  Sum_probs=174.3

Q ss_pred             hHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhhhcchhhHHHHHHHh
Q 009978          137 GIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVAR  216 (521)
Q Consensus       137 g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~  216 (521)
                      +.+.-+-.+...+..+.+-++.+|+..+.=..+..+++.++.++.+++  ++.+.=+++-++.+++.|........+.. 
T Consensus        62 ~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~--~~v~~~l~Gv~las~ssg~GE~tfL~lt~-  138 (402)
T PF02487_consen   62 GAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFS--PSVWVRLLGVVLASLSSGLGEVTFLSLTH-  138 (402)
T ss_pred             hHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeec--cchhHHHHHHHHHhhhhhhhHHHHHHHHH-
Confidence            446666777888888889999999886665666677888899998988  89998889999999999987777777644 


Q ss_pred             cCCchhhHHHHHHHHhhhhhhhHHHHHHHHHhhhccCc--hhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHH
Q 009978          217 WFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGI--FGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYI  294 (521)
Q Consensus       217 ~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gw--~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~  294 (521)
                      .+++    ...+-++.+.+.++++|+..-..+.+ .|+  |..+++...+.++..+..++..+.++...+..+.++.+..
T Consensus       139 ~y~~----~~l~~wssGTG~aGl~Ga~~y~~lT~-~g~s~~~tll~~~~lp~~~~~~~f~~L~~~~~~~~~~~~~~~~~~  213 (402)
T PF02487_consen  139 FYGK----SSLSAWSSGTGGAGLVGALYYLGLTT-LGLSPRTTLLIMLVLPAIFLLSYFFLLPSPPTNRPYQESESEDEA  213 (402)
T ss_pred             hcCc----cccccccCCcChhhHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHHhhccccccCCCcccCCCCcc
Confidence            5543    35788888888888999887766655 554  7778887777666555555555443322211111100000


Q ss_pred             HHhhccccccCCCCCCCCCCchHHHHHh-cchHHHHHHHHHHHHHHHHHHHH-HHHHHHH-HHhCCCcccchhHhHHHHH
Q 009978          295 LREKQKPLLMGNKHKPATVIPPFRRLLS-KMPTWSIIVANAMHSWGFFVILS-WMPIYFN-FVYHIDLRQASWFSAVPWS  371 (521)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~-~~~g~~~~~~~~~~~~~~~  371 (521)
                      .++.... +..+.+.+......+++-++ -|.++...+-.++.++..+.++. ..+...- ....-...+..++...+.+
T Consensus       214 ~~~~~~~-~~~~~~~~~~~~~~~~~k~~~~k~Ll~ymiPL~lVY~aEY~InqGv~~tl~fp~~~~~~r~~Y~~Y~~~YQ~  292 (402)
T PF02487_consen  214 EDDLLES-ETSESKPDSSSKLSFKEKLKRLKPLLWYMIPLFLVYFAEYFINQGVAPTLLFPNSFFSPRDQYRWYQLLYQL  292 (402)
T ss_pred             ccccccc-ccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHhcCCccCCCHHHHHHHHHHHHHH
Confidence            0000000 00001111111222222221 12222233333344444443322 1222211 1111112234455555666


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHH---HHhccchhHHHHHHHHH-HHHHHhhhhhhhHHHH
Q 009978          372 VMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALI---GLTAAKSPVMASAWLTL-AIGMKSFSHSGFLVNL  447 (521)
Q Consensus       372 ~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  447 (521)
                      +..+++--...+  |+  |       +.++..+.-.+-.+.++   .+.+.++.|..++.++. |...+.........+.
T Consensus       293 GVFISRSS~~~~--ri--r-------~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YVNtF~~I~  361 (402)
T PF02487_consen  293 GVFISRSSLPFF--RI--R-------RLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYVNTFYRIS  361 (402)
T ss_pred             HHhhhhcceeee--eh--h-------hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            655555322221  22  1       11222111111111111   11122344444333333 4444444445555666


Q ss_pred             HhhhccchhhHHhHHHHHHHHHHHHHHHHHHHH
Q 009978          448 QEIAPQYSGVLHGISNTAGTFAAILGTVGAGFF  480 (521)
Q Consensus       448 ~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l  480 (521)
                      .+..+++|-.++|.......+|..++..++-.+
T Consensus       362 ~~~~~~~REFslg~vsvsds~GI~lAgll~l~l  394 (402)
T PF02487_consen  362 EEVPPEDREFSLGAVSVSDSLGILLAGLLGLPL  394 (402)
T ss_pred             hcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            677778999999999988888888777665443

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=99.16  E-value=8.4e-10  Score=103.81  Aligned_cols=278  Identities=16%  Similarity=0.133  Sum_probs=160.8

Q ss_pred             HHHHHHHHhhhhhhhhhhhhhhhhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhH----hcchHHHH-HHHHHHHHHH
Q 009978          104 LALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDY----YGGKIIMA-WGVALWSLAT  178 (521)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr----~Grr~~~~-~~~~~~~~~~  178 (521)
                      ++...+..-+.+..-....+++.+++|++....+.+-.+..+...+.+++.|..+||    |||||.++ .+.+...++.
T Consensus        37 v~~ia~Gvqf~wA~elsy~tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l  116 (498)
T KOG0637|consen   37 VASIAAGVQFGWALELSYLTPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSL  116 (498)
T ss_pred             HHHHHHHHHHHHHHHhccccHHHHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHH
Confidence            333333334444455566788889999999999999888889999999999999996    78877654 4556666666


Q ss_pred             hhhhhcc--------cc-------chHHHHHHHHHHhhhhcchhhHHHHHHHhcCCchhhHH-HHHHHHhhhhhhhHHHH
Q 009978          179 FLTPWAA--------DT-------SLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERAR-AVAIAMGGFTSGNAIGL  242 (521)
Q Consensus       179 ~l~~~~~--------~~-------~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~-~~~~~~~~~~~g~~~g~  242 (521)
                      ++..++.        ..       ....++++--+.=++.-.....+.+++.|...++++.+ +++.+....++|..+|.
T Consensus       117 ~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY  196 (498)
T KOG0637|consen  117 FLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGY  196 (498)
T ss_pred             hhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeee
Confidence            6666651        00       12223444444445555777889999999997776666 99999999999999999


Q ss_pred             HHHHHhhhccCchh--HHHHHHHHHHHHHHHHH-------HhcCCCCCCCCCCchhHHHHHHHhhccccccCCCCCCCCC
Q 009978          243 VLSPILMSQAGIFG--PFVIFGLSGFLWVLVWL-------SATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATV  313 (521)
Q Consensus       243 ~l~~~l~~~~gw~~--~f~~~~~~~~i~~i~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (521)
                      .+++++    +|+-  .|...-.+.+.+..+-.       +...++-+......+.+......+.      +.+..+...
T Consensus       197 ~~g~y~----~~~~~~~Ft~~~~~~~~C~~~~~~~~~~v~L~~i~~~~~l~~~~~~~~s~~~~~~------~~~~~~~~~  266 (498)
T KOG0637|consen  197 ALGSYL----GLYKIFPFTLTTACDLYCANLKLCFFLEVTLLLIETSESLWYPQEKPLSPKGTTA------RSKSSKLPF  266 (498)
T ss_pred             eccccc----CceEEeehHHHHHHHHHHHHHHHHHHHhhhhhheecccccccccccCCCCCcccc------cccccCcch
Confidence            888744    4432  22222111111111111       1111110000000000000000000      000000000


Q ss_pred             C-chHHHHHh-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCCccc----------------chhHhHHHHHHHH
Q 009978          314 I-PPFRRLLS-KMPTWSIIVANAMHSWGFFVILSWMPIYFNF-VYHIDLRQ----------------ASWFSAVPWSVMA  374 (521)
Q Consensus       314 ~-~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~----------------~~~~~~~~~~~~~  374 (521)
                      . +....+.+ .|..+.+++...+.+.+.+.+..|...++-+ .++-++..                -.+-+.+..+...
T Consensus       267 ~~e~fG~~~~mpr~m~~L~i~~lltW~a~f~f~LF~TDfmG~~vy~GDp~a~~~S~a~~~Y~~GV~~G~~GL~ins~~lg  346 (498)
T KOG0637|consen  267 LLEIFGALKVMPRPMRMLLIVTLLTWIAWFPFLLFDTDFMGREVYGGDPKADENSEAKKLYNAGVRMGCLGLMLNSIVLG  346 (498)
T ss_pred             HHHHhchHhhCChhHHHHHHHHHHHHHHHHHHHHHHHHhcchHhhCCCCCCCcchhHHHHHHhccccchHHHHHHHHHHH
Confidence            1 11112222 3568888899999998888888777777654 34433321                1233445556666


Q ss_pred             HHHHHHHHHHHHHHhcC
Q 009978          375 FTGYLGGLLSDMLIQRG  391 (521)
Q Consensus       375 i~~~~~g~l~dr~~~~~  391 (521)
                      +-+....++.+|+|.|+
T Consensus       347 i~S~~~~~l~~~~g~r~  363 (498)
T KOG0637|consen  347 IYSLLVEKLSRKFGTRK  363 (498)
T ss_pred             HHHHHHHHHHHhcCcce
Confidence            77788888889988553

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=99.16  E-value=6.9e-09  Score=94.97  Aligned_cols=362  Identities=13%  Similarity=0.061  Sum_probs=204.2

Q ss_pred             hHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHh-----HhcchHHHHH-H
Q 009978           97 RVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVD-----YYGGKIIMAW-G  170 (521)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~d-----r~Grr~~~~~-~  170 (521)
                      ....+..+.+.+.+.+.-..... .+|.+.+.-|.|.++.+...-++ ..+ ..-++|.++.|     |+||||.-++ +
T Consensus        29 d~~~illLl~LYllQGiP~GL~~-~iP~lL~ak~vSyt~~a~fS~ay-~P~-sLKllWaPiVDs~y~k~~GrrksWvvp~  105 (510)
T KOG3574|consen   29 DRSSILLLLFLYLLQGIPLGLIG-AIPLLLQAKGVSYTSQAIFSFAY-WPF-SLKLLWAPIVDSVYSKRFGRRKSWVVPC  105 (510)
T ss_pred             hhhhHHHHHHHHHHcCCchhHhh-hhHHHhcCCCcchhhhhhhhhhh-hHH-HHHHHHHhhhHHHHHHhhccccceeeeh
Confidence            34455566667777887777777 89999888888888777654332 233 23678899999     9999985332 2


Q ss_pred             HHHHHHHHhhhhhcc---------ccchHHHHHHHHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHH
Q 009978          171 VALWSLATFLTPWAA---------DTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIG  241 (521)
Q Consensus       171 ~~~~~~~~~l~~~~~---------~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g  241 (521)
                      ..+.+..+.+.+.-.         .++...+...-++.-+..+....+...+.-.+..+++.|.+......+.+.|..++
T Consensus       106 q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~GyfL~  185 (510)
T KOG3574|consen  106 QYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYFLG  185 (510)
T ss_pred             HHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHHhh
Confidence            233322222222211         13444444455667777788888999999889888999999888888888888877


Q ss_pred             HHHHHHhhh-------ccCch---------hHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHHhhccccccC
Q 009978          242 LVLSPILMS-------QAGIF---------GPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMG  305 (521)
Q Consensus       242 ~~l~~~l~~-------~~gw~---------~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (521)
                      ..+.-.+-.       ..+|.         ..+++.+.+.++.-.+..+..+|.+++..   + |               
T Consensus       186 ~~ifLaL~s~dF~N~y~rs~P~~~g~ItL~gy~~fwg~~~~vat~Lv~~~kke~~~~~~---~-e---------------  246 (510)
T KOG3574|consen  186 NVVFLALESPDFCNTYLRSIPLDQGFITLAGYLWFWGALFIVATTLVALLKKENDESVD---E-E---------------  246 (510)
T ss_pred             cceeeEecChhhhhHHHhcCcCccceEEhhHHHHHHHHHHHHHHHHHHHhcCCCchhhh---h-h---------------
Confidence            665433322       11222         23344455555554445554444333211   0 0               


Q ss_pred             CCCCCCCCCchHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhHhHHHHHHHHHHHHHHHHHHH
Q 009978          306 NKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSD  385 (521)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~d  385 (521)
                      .+...+...+-++++++-|.+..+.......-.++.+-....+.-+.| +|++.++.+++..+..-..++.    ++...
T Consensus       247 ~~~~i~~~yk~l~~vLklk~v~~la~i~lt~K~gf~a~da~t~LkLle-~Gv~ke~Lal~~v~~~plqI~l----~~~~g  321 (510)
T KOG3574|consen  247 LELGIHESYKLLRDVLKLKSVRWLAGILLTGKLGFQAADALTSLKLLE-HGVPKEELALIAVPLVPLQIAL----PLYIG  321 (510)
T ss_pred             hhcCHHHHHHHHHHHHcCccHHHHHHHHHHHHHHhhhhhhccchHHHH-cCCChhHheeeeeehhhHHHhh----hhhhe
Confidence            000111122345677788888887777777778888888888888888 7999998887754433334444    44433


Q ss_pred             HHHhcCCCc-chhHHHHHHHHHHHHHHHHHHHh-cc-c---h-hHHHHHHH----HHHHHHHhhhhhhhHHHHHhhh-cc
Q 009978          386 MLIQRGTSV-TLTRKILQSIGFIAPGIALIGLT-AA-K---S-PVMASAWL----TLAIGMKSFSHSGFLVNLQEIA-PQ  453 (521)
Q Consensus       386 r~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~-~---~-~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~  453 (521)
                      |+......+ ...+....-+........+..+. .. .   . +....+..    .+..++.........+..+++. |.
T Consensus       322 k~ta~~~pl~~~lka~~~R~~~~~~~t~Lv~~~~~~~~~~G~~~~~~~il~i~~y~~~~~~~ts~fv~~maf~aqisdp~  401 (510)
T KOG3574|consen  322 KWTAGPRPLNVFLKAVPYRLGGGLVQTALVWWTPTLGHSDGTFPRGYYILLITSYAFHQVFVTSMFVSGMAFHAQISDPA  401 (510)
T ss_pred             eecCCCCcchHHHHhhhHHHHHHHHHHHHHhhhcccccCCCceeechHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcc
Confidence            332211111 11111111122222222222211 11 1   0 11111111    1222222222222233333444 46


Q ss_pred             chhhHHhHHHHHHHHHHHHHHHHHHHHhhccc
Q 009978          454 YSGVLHGISNTAGTFAAILGTVGAGFFVELVG  485 (521)
Q Consensus       454 ~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g  485 (521)
                      ..|+.+.+.++..++|+-.-..+..++.|..+
T Consensus       402 iggTymTlLNTLsnLGg~wp~tv~l~l~D~lt  433 (510)
T KOG3574|consen  402 IGGTYMTLLNTLSNLGGNWPGTVALWLADGLT  433 (510)
T ss_pred             cCccHHHHHHHHHHhcCCcHHHHHHHhcccCc
Confidence            88999999999999999988888888888543

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.16  E-value=7.2e-10  Score=103.70  Aligned_cols=148  Identities=16%  Similarity=0.165  Sum_probs=127.2

Q ss_pred             hhhhhhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhh
Q 009978          122 IVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGL  201 (521)
Q Consensus       122 ~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~r~l~G~  201 (521)
                      ...-..++|++..++.++.-...+..+++++++|+|.||+|.|+++.++.++..+.++...+.  ..-..+.++..+.|+
T Consensus       276 ~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~--~~~~~f~i~gll~g~  353 (438)
T COG2270         276 GVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFL--EGELDFWILGLLVGT  353 (438)
T ss_pred             HHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHc--cccHHHHHHHHHHHH
Confidence            334455899999999999999999999999999999999999999999999998888776666  556667777889999


Q ss_pred             hhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHhhhccC-chhHHHHHHHHHHHHHHH
Q 009978          202 AEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAG-IFGPFVIFGLSGFLWVLV  271 (521)
Q Consensus       202 g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g-w~~~f~~~~~~~~i~~i~  271 (521)
                      ..|..+..+.++..+..|+++-++.+|+++.....+..+||.+.+.+.+..| -|..+....++.++.+++
T Consensus       354 s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~  424 (438)
T COG2270         354 SLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLL  424 (438)
T ss_pred             hcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhh
Confidence            9999999999999999999999999999999999999999999999987655 666666665555444443

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.15  E-value=3.9e-09  Score=103.52  Aligned_cols=176  Identities=11%  Similarity=0.033  Sum_probs=109.8

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHH
Q 009978          324 MPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQS  403 (521)
Q Consensus       324 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~  403 (521)
                      |.++...+.....+...+.+....+.+-++.+|++..+.+++.++..++..+.++..|++.||+|.|         .+..
T Consensus        34 r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R---------~v~~  104 (462)
T PRK15034         34 RNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGR---------RWTV  104 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCh---------HHHH
Confidence            4566666665555555555656566655545999999999999999999999999999999999998         2333


Q ss_pred             HHHHHHHHHHHHHhcc-----chhHHHHHHH-HHHHHHHhhhhhhhHHHHHhhhc-cchhhHHhHHHHHHHHHHHHHHHH
Q 009978          404 IGFIAPGIALIGLTAA-----KSPVMASAWL-TLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVG  476 (521)
Q Consensus       404 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~  476 (521)
                      .+.+...+..+.....     ++.+.+++.- +.+.+  +...+.....+++.+| ++||++.|+....+++|..+++++
T Consensus       105 ~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig--g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l  182 (462)
T PRK15034        105 FSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA--GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLV  182 (462)
T ss_pred             HHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH--HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHH
Confidence            3333333443333332     3444333333 33332  4455556666677676 589999999977777777666555


Q ss_pred             HHHHh-----hccc------------chHHHHHHHHHHHHHHHHHHHHhcc
Q 009978          477 AGFFV-----ELVG------------SFQGFLLLTSLLYFLSALFYIIFST  510 (521)
Q Consensus       477 ~g~l~-----~~~g------------~~~~~~~~~~~~~~~~~~~~~~~~~  510 (521)
                      ...+.     +..|            +++.+.++...+.++..++.++..+
T Consensus       183 ~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~  233 (462)
T PRK15034        183 APLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMN  233 (462)
T ss_pred             HHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            54433     2222            1445555555555555555554433

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.13  E-value=1.3e-09  Score=94.84  Aligned_cols=352  Identities=13%  Similarity=0.064  Sum_probs=185.8

Q ss_pred             hhhhhhhhhhhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHHHHHHHhhhhhccccchHHHHHHH
Q 009978          117 VMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMR  196 (521)
Q Consensus       117 ~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~r  196 (521)
                      ..++..-.+-+.++....++|.+.-+......+.+.+.|-++|+-|||+..+.-.+.+.++++- -.+  +.|-.++++|
T Consensus        55 LQgPYvYyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCiT-KhS--pqYkVLmVGR  131 (454)
T KOG4332|consen   55 LQGPYVYYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCIT-KHS--PQYKVLMVGR  131 (454)
T ss_pred             hcCceeeeeehhcCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHHh-hcC--CceEEEeehh
Confidence            4556666677888999999999988888888889999999999999999766555555444332 233  7899999999


Q ss_pred             HHHhhhhcchhhHHHHHH-HhcCCchhhHHHHHHHH--------hhhhhhhHHHHHHHHHhhhcc--CchhHHHHHHHHH
Q 009978          197 AVVGLAEGVALPAMNNMV-ARWFPQTERARAVAIAM--------GGFTSGNAIGLVLSPILMSQA--GIFGPFVIFGLSG  265 (521)
Q Consensus       197 ~l~G~g~~~~~~~~~~~i-~~~~~~~~r~~~~~~~~--------~~~~~g~~~g~~l~~~l~~~~--gw~~~f~~~~~~~  265 (521)
                      ++-|+..+..+.+..++. .|..  ++|+.-.-+..        .+..+-.+++.+.+..+.+.+  |.-.+|-..+++.
T Consensus       132 ~LGGiaTsLLFSaFEsWliaEHn--ekr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~slGPVAPFdAAacfL  209 (454)
T KOG4332|consen  132 VLGGIATSLLFSAFESWLIAEHN--EKRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFSLGPVAPFDAAACFL  209 (454)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHhh--hccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhccCCCCchHHHHHHH
Confidence            999999998888887754 4443  33332222211        233344455555555666654  4455666555554


Q ss_pred             HHHHHHHHHhcCCCCCCCCCCchhHHHHHHHhhccccccCCCCCCCCCCchHHHHHhcchHHHHHHHHHHHHHHHHHH-H
Q 009978          266 FLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVI-L  344 (521)
Q Consensus       266 ~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~  344 (521)
                      .+...+.+.-..|.-.++     .|.+....               +.+...+.+..++++.++..+..+.-...+.+ .
T Consensus       210 aigmAvil~~W~ENygdp-----s~~kdllt---------------qf~gaa~aiaSD~ki~LLG~iqsLFE~smytFVF  269 (454)
T KOG4332|consen  210 AIGMAVILSSWSENYGDP-----SENKDLLT---------------QFKGAARAIASDEKIALLGAIQSLFEGSMYTFVF  269 (454)
T ss_pred             HHHHHHHHhhhhhccCCh-----hhhHHHHH---------------HhhHhHHHHhcchHHHHHHHHHHHHhhhhheeee
Confidence            444333333222221111     11111111               11123345566666666555544444433333 3


Q ss_pred             HHHHHHHHHHhCCCcccchhHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHhcc-----
Q 009978          345 SWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAA-----  419 (521)
Q Consensus       345 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  419 (521)
                      .|.|..--+..+   .--|++++-+.++.++|+-+..++..|-..+   .-..  ..+........+.+..+...     
T Consensus       270 LWTPaLspn~e~---iPhGfiFatFMlASmLGSSla~Rl~s~s~~~---ve~y--mqivf~vs~a~l~Lpilt~~vsP~k  341 (454)
T KOG4332|consen  270 LWTPALSPNDEE---IPHGFIFATFMLASMLGSSLASRLLSRSSPK---VESY--MQIVFLVSIAALLLPILTSSVSPSK  341 (454)
T ss_pred             eecccCCCCccc---CCchhHHHHHHHHHHHhhHHHHHHHhcCCcc---cchH--HHHHHHHHHHHHHHHHHHhccCCCc
Confidence            344432211111   1246777777777777776665555443322   1111  11111111112222222111     


Q ss_pred             chhHHHHHHHHHHHHHHhhhhhhhHHHHHhhhcc-chhhHHhHHHHHHHHHHHHHHHHHHHHhhc--ccchHHHHHHHHH
Q 009978          420 KSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQ-YSGVLHGISNTAGTFAAILGTVGAGFFVEL--VGSFQGFLLLTSL  496 (521)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~--~g~~~~~~~~~~~  496 (521)
                      .++...++.+++.-.+.+..+|.+.-.-.+..|+ .|++.+.++..--++-.-++-..  .=.+.  .+ -...|-++..
T Consensus       342 es~~~s~i~F~~~E~cvGlfwPSimkmRsqyIPEearstimNfFRvPLnifvClvLyn--lh~~~~p~~-tr~mf~icS~  418 (454)
T KOG4332|consen  342 ESPSESLIGFCLFEACVGLFWPSIMKMRSQYIPEEARSTIMNFFRVPLNIFVCLVLYN--LHVDAFPTT-TRNMFGICSA  418 (454)
T ss_pred             CCchHHHHHHHHHHHHHhhcchHHHHHHHhhCCHHHHhhhhhheechhhHhhhhhhee--cccccCccc-cchhhhhhHH
Confidence            2233344455555556667777776666666674 78776665544333322221110  00111  11 3456666666


Q ss_pred             HHHHHHHH
Q 009978          497 LYFLSALF  504 (521)
Q Consensus       497 ~~~~~~~~  504 (521)
                      ...++.+.
T Consensus       419 ~~~~a~i~  426 (454)
T KOG4332|consen  419 FLFVASIL  426 (454)
T ss_pred             HHHHHHHH
Confidence            66555443

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.11  E-value=1.3e-08  Score=100.37  Aligned_cols=170  Identities=11%  Similarity=0.066  Sum_probs=114.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHH
Q 009978          326 TWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIG  405 (521)
Q Consensus       326 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~  405 (521)
                      ++.+++..+...+.........|.+ ++.+|.+..+.+++.+...++..++++..|++.||+|+|         ..+..+
T Consensus         5 ~~~~~~~f~~~G~~~~~~~~l~~~~-~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r---------~~~~~g   74 (410)
T TIGR00885         5 FALITSLFALWGFANDITNPMVPQF-QQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYK---------AGILLG   74 (410)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCch---------HHHHHH
Confidence            4455556666665655556777766 455899999999999999999999999999999999998         333444


Q ss_pred             HHHHHHHHHHHhc---cchhHHHHHHHHHHHHHHhhhhhhhHHHHHhhhc-cchhhHHhHHHHHHHHHHHHHHHHHHHHh
Q 009978          406 FIAPGIALIGLTA---AKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFV  481 (521)
Q Consensus       406 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~  481 (521)
                      ..+.++..+.+..   .++.+..+...++.+...+...+....+..+..| +++++..++.+....+|..++|.+.+.+.
T Consensus        75 ~~l~~~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~  154 (410)
T TIGR00885        75 LFLYALGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLI  154 (410)
T ss_pred             HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444433221   2344444444444333344444555555555555 68899999999999999999999998885


Q ss_pred             hcc-------------------------cchHHHHHHHHHHHHHHHHHH
Q 009978          482 ELV-------------------------GSFQGFLLLTSLLYFLSALFY  505 (521)
Q Consensus       482 ~~~-------------------------g~~~~~~~~~~~~~~~~~~~~  505 (521)
                      ...                         .+++..|++.+++.++..++.
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~  203 (410)
T TIGR00885       155 LSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLI  203 (410)
T ss_pred             hcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            321                         137778877777665554444

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.11  E-value=1.7e-09  Score=121.90  Aligned_cols=146  Identities=17%  Similarity=0.188  Sum_probs=122.3

Q ss_pred             hhhhhh-hhhhhcCCcc-hhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHHHHHHHhhhhhccccchHHHHHHH
Q 009978          119 SVAIVP-LSLAHGWSRS-FSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMR  196 (521)
Q Consensus       119 ~~~~~~-~~~~~~~s~~-~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~r  196 (521)
                      ...+|. +.+.+|.+.. +.|++.+...++.+++++++|++.||+++++++.++.++.+++.++..+.  .+.+.+++..
T Consensus       252 ~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~  329 (1146)
T PRK08633        252 QANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTA--PSLASVLVLF  329 (1146)
T ss_pred             HHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHh--hhHHHHHHHH
Confidence            334444 4566899998 99999999999999999999999999999999998888888888887777  7888888889


Q ss_pred             HHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHhhh-ccCchhHHHHHHHHHH
Q 009978          197 AVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMS-QAGIFGPFVIFGLSGF  266 (521)
Q Consensus       197 ~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~-~~gw~~~f~~~~~~~~  266 (521)
                      ++.|++.+...+...+++.+..|+++|++++++.+....+|.++++.+++.+.. .+++...|++.+.+.+
T Consensus       330 ~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  400 (1146)
T PRK08633        330 FLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALVTL  400 (1146)
T ss_pred             HHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence            999999998888999999999999999999999999999999888888877654 2345556666555443

>PRK10133 L-fucose transporter; Provisional

Probab=99.11  E-value=5e-09  Score=104.31  Aligned_cols=141  Identities=11%  Similarity=0.106  Sum_probs=113.3

Q ss_pred             hhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhhhcc
Q 009978          126 SLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGV  205 (521)
Q Consensus       126 ~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~r~l~G~g~~~  205 (521)
                      .+.+|.++.+.++....+.++..++.++.|++.||+|+|+++..+.++.+++.++..+.  ++.+ .+..-++.|++.+.
T Consensus       287 ~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~--~~~~-~~~~~~l~glg~~~  363 (438)
T PRK10133        287 EEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFA--GGHV-GLIALTLCSAFMSI  363 (438)
T ss_pred             hhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHc--CChH-HHHHHHHHHHHHHH
Confidence            34689999999999999999999999999999999999999988887777666665555  4432 34556789999999


Q ss_pred             hhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHhhhccC-chhHHHHHHHHHHHHHHH
Q 009978          206 ALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAG-IFGPFVIFGLSGFLWVLV  271 (521)
Q Consensus       206 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g-w~~~f~~~~~~~~i~~i~  271 (521)
                      .+|...+...+..|+ +.+.+.++... ..+|..++|++.+.+.+..| -|..|++..+..+..++.
T Consensus       364 i~P~~~s~a~~~~~~-~~~~as~l~~~-~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~~~~~  428 (438)
T PRK10133        364 QYPTIFSLGIKNLGQ-DTKYGSSFIVM-TIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIF  428 (438)
T ss_pred             HHHHHHHHHHcccch-hhccchhHHhH-HhccchHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHH
Confidence            999999999999864 56777777764 44788889999999999887 788888766655444433

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.09  E-value=1.7e-09  Score=109.10  Aligned_cols=173  Identities=14%  Similarity=0.074  Sum_probs=114.1

Q ss_pred             HHHHHHHHHHHhhhhhhhhhhhhhhh-hhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHH--------HHHH
Q 009978          101 VSMLALALALCNADRVVMSVAIVPLS-LAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIM--------AWGV  171 (521)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~--------~~~~  171 (521)
                      +....+..+........+...+|.+. +.+|.+..+.|++.++..++..++.++.|+++||+++|+..        ..+.
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~  342 (465)
T TIGR00894       263 VWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGI  342 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence            33444444555544455555667664 55899999999999999999999999999999998754321        1111


Q ss_pred             HHH--HHHHhhhhhccccchHHHHHHHHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHhh
Q 009978          172 ALW--SLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILM  249 (521)
Q Consensus       172 ~~~--~~~~~l~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~  249 (521)
                      ...  ++..+..... ..+....++.-.+.+.+.+...+.......|..| +.+|.+.++.+....+|..++|.+.+.+.
T Consensus       343 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~l~~~i~p~l~g~~~  420 (465)
T TIGR00894       343 GGLGPGIFAYALPYL-SAAFYLTIIILTLANAVSSGPLAGVLINSLDLAP-RFLGFIKGITGLPGFIGGLIASTLAGNIL  420 (465)
T ss_pred             HHHHHHHHHHHHHHc-CCchHHHHHHHHHHHHHhhhhhhhhhhchhhcCh-hHHHHHHHHHHHHHHHHHHHHHHhhheee
Confidence            111  1111111111 1334444444455555555545555555667775 58999999999999999999999999887


Q ss_pred             hcc---CchhHHHHHHHHHHHHHHHHHHh
Q 009978          250 SQA---GIFGPFVIFGLSGFLWVLVWLSA  275 (521)
Q Consensus       250 ~~~---gw~~~f~~~~~~~~i~~i~~~~~  275 (521)
                      +..   +|+..|.+.++..++..++....
T Consensus       421 ~~~~~~~~~~~f~~~~~~~~i~~i~~~~~  449 (465)
T TIGR00894       421 SQDSKNVWLIVFLIMAFVNILCVIFYLIF  449 (465)
T ss_pred             CCCCchHHHHHHHHHHHHHHHHHHHeeee
Confidence            643   38888888888777766555443

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.08  E-value=1.8e-08  Score=97.21  Aligned_cols=159  Identities=12%  Similarity=0.030  Sum_probs=109.8

Q ss_pred             HHHHHHHHHHHHhCCCccc-chhHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHhccch
Q 009978          343 ILSWMPIYFNFVYHIDLRQ-ASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKS  421 (521)
Q Consensus       343 ~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  421 (521)
                      ...+...++.+.+|++..+ .|.+.+.+..+..+..+.+|++.||+|.|         .++..+.+.-++...+....++
T Consensus        44 n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K---------~vL~l~~l~Wsl~t~L~~fa~S  114 (511)
T TIGR00806        44 GESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYK---------PVLVLQALSFVCVWLLLLLGTS  114 (511)
T ss_pred             hHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCch---------HHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555666679999999 99999999999999999999999999998         3445555555555555555544


Q ss_pred             hHHHHHHHHHHHHHHhhhhhhhHHHHHhhhc-cchhhHHhHHHHHHHHHHHHHHHHHHHHhhccc--chHHHHHHHHHHH
Q 009978          422 PVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVG--SFQGFLLLTSLLY  498 (521)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g--~~~~~~~~~~~~~  498 (521)
                      ...+.+.=++.+...+... ....++....| ++|+++.|+.+....+|.++++++.+.+. ..|  .|....++.....
T Consensus       115 l~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~-s~gWr~y~~Ln~Isl~s~  192 (511)
T TIGR00806       115 VWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLV-TLGWISYSTLNIISLVFM  192 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCchhHHHHHHHHHHHH
Confidence            4444444333333333334 55555555555 79999999999999999999999999944 445  2344455555556


Q ss_pred             HHHHHHHHHhccCc
Q 009978          499 FLSALFYIIFSTGE  512 (521)
Q Consensus       499 ~~~~~~~~~~~~~~  512 (521)
                      .++.++.+++++.+
T Consensus       193 ~~a~~~a~~LP~~~  206 (511)
T TIGR00806       193 TFSVFLALFLKRPK  206 (511)
T ss_pred             HHHHHHHHhCCCCc
Confidence            66666666665433

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.07  E-value=6.2e-09  Score=105.04  Aligned_cols=142  Identities=13%  Similarity=-0.012  Sum_probs=108.8

Q ss_pred             hhhhhhhhhhhhhhhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHHHHHHHhhhhh---ccccch
Q 009978          113 ADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPW---AADTSL  189 (521)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~l~~~---~~~~~~  189 (521)
                      ..........+.+.+....+....+++.+...++..++.++++++.||+|+|+.+.++.++.+++.+...+   ....+.
T Consensus       245 ~~~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (473)
T PRK10429        245 IASNIINGFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNA  324 (473)
T ss_pred             HHHHHHhhheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhH
Confidence            33344445555665554445667777877777889999999999999999999998888776666554332   222566


Q ss_pred             HHHHHHHHHHhhhhcchhhHHHHHHHhcCCc-------hhhHHHHHHHHhhhhhhhHHHHHHHHHhhhccCc
Q 009978          190 LALLAMRAVVGLAEGVALPAMNNMVARWFPQ-------TERARAVAIAMGGFTSGNAIGLVLSPILMSQAGI  254 (521)
Q Consensus       190 ~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~-------~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gw  254 (521)
                      +.+++.-++.|++.+...+...++++|..|.       ++.|..++......-+|..+++.+.+++.+..|+
T Consensus       325 ~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~Gy  396 (473)
T PRK10429        325 LLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLIGY  396 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            7777788889999999899999999999762       3346689999999999999999999999876665

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=99.06  E-value=5.4e-09  Score=94.54  Aligned_cols=351  Identities=13%  Similarity=0.091  Sum_probs=220.4

Q ss_pred             HHHhhhhhHHHHhHhcchHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhhhcchhhHHHHHHHhcCCchhhHHH
Q 009978          147 YLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARA  226 (521)
Q Consensus       147 ~~i~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~  226 (521)
                      +.+.-.+.=.+.|-.-.|+++++-.+.......+..+.  ++.+.+=+.-++.|...+. ..+.++++-...+++++.++
T Consensus        55 YLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g--~sV~~mQvlE~FyG~~tAa-EIAYysYIYs~Vd~~~Yqrv  131 (433)
T KOG3810|consen   55 YLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFG--PSVKAMQVLEFFYGPATAA-EIAYYSYIYSKVDPEMYKRV  131 (433)
T ss_pred             HHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhc--CCchheeeehhhcChHHHH-HHhhhheeeeecCHHHHHHH
Confidence            34444455568999999999888777777777777777  8999999999999988654 77889999999999999999


Q ss_pred             HHHHHhhhhhhhHHHHHHHHHhhhccCchh--HHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHHhhcccccc
Q 009978          227 VAIAMGGFTSGNAIGLVLSPILMSQAGIFG--PFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLM  304 (521)
Q Consensus       227 ~~~~~~~~~~g~~~g~~l~~~l~~~~gw~~--~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (521)
                      .+...+..-.|..+|..++..++..-.+..  .=.+.-....+..++.+ +.|..++..-...+++ +....+.++.   
T Consensus       132 t~y~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~ISL~~~~ia~~~A~-fLP~v~rSl~f~~~~~-~~~v~~~e~~---  206 (433)
T KOG3810|consen  132 TGYCRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYISLAEVTIAVLLAL-FLPRVKRSLYFHRLED-KISVGDLEEM---  206 (433)
T ss_pred             HHHhHHHHHHHhHHHhHHHHHHhhhcccchhhhchhhHHHHHHHHHHHh-hCCCCchhhhhhcccc-cceeccchhc---
Confidence            999999999999999999998876543332  22222222222223333 3344332211111111 0000000000   


Q ss_pred             CCCCCCC--------CCCchHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCcccchhHhHHHHHHHHH
Q 009978          305 GNKHKPA--------TVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVY-HIDLRQASWFSAVPWSVMAF  375 (521)
Q Consensus       305 ~~~~~~~--------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~i  375 (521)
                      ..+.+..        ...+++....+||.++...+-..+...+++.+..+....-++.. .-....-|..-++..+.+++
T Consensus       207 ~~~~~~~~~l~~~~~~l~~~l~~~y~np~ll~WSlWwAl~scg~~QV~nY~Q~LW~~~~~~~~~vyNG~veAv~tlLGa~  286 (433)
T KOG3810|consen  207 NPQASYMSYLRGAFVLLWRDLQECYSNPRLLKWSLWWALASCGYYQVTNYTQILWKEVAPNPANVYNGAVEAVSTLLGAI  286 (433)
T ss_pred             CccchhhHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHhhchhHHHHHHHHHHHHhhCCCchhhhcCHHHHHHHHHHHH
Confidence            0000000        11224556677899888888888888888888888887777742 11112234455566677778


Q ss_pred             HHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhhhhhhh-HHHHHhhhccc
Q 009978          376 TGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGF-LVNLQEIAPQY  454 (521)
Q Consensus       376 ~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  454 (521)
                      +.+..|.+--++.|+       +..++.++.+..+..++.+....+.|...+..++.-....+..+.. ..+..++..+.
T Consensus       287 ~~~~~g~l~i~w~r~-------g~~ll~~~s~~~agllf~m~~t~~Iw~~Ya~yvlfr~~y~l~itiA~~~iA~nL~~e~  359 (433)
T KOG3810|consen  287 AALAAGYLNINWNRW-------GDLLLAVGSAVQAGLLFIMAQTQHIWVCYAGYVLFRVIYQLTITIATFQIARNLSSEL  359 (433)
T ss_pred             HHHHHHheeeccchh-------hHHHHHHHHHHhhhhhhhhhcccceehhhhhHHHHHhhHhhhhhHHHHHHHHhhhhhh
Confidence            888888886665555       3456666677777777777777777777776666555444443333 34445555677


Q ss_pred             hhhHHhHHHHHHHHHHHHHHHHHHHHhhccc----------chHHHHHHHHHHHHHHHHHHHHhccCcccc
Q 009978          455 SGVLHGISNTAGTFAAILGTVGAGFFVELVG----------SFQGFLLLTSLLYFLSALFYIIFSTGERVN  515 (521)
Q Consensus       455 ~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  515 (521)
                      -|-.+|+..++.-+-..+-..   .+.|..|          -|..-|++.+++.+++..+.....++.+.+
T Consensus       360 ~gLvFGiNTFvAl~lQsilT~---iVvd~~g~~L~ir~Q~~~Y~~Yf~v~~~i~~~~~~~~~~~~~~~~~~  427 (433)
T KOG3810|consen  360 FGLVFGINTFVALILQSILTL---IVVDDRGLGLDIRTQFVVYSSYFIVLGVIFLIGFGIEYLMCRRNKVP  427 (433)
T ss_pred             heeeeehHHHHHHHHHHhheE---EEEcccccCCCcceeEEEEeehHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence            888888877665544443332   3344222          355678888888888877665555554444

>PRK09669 putative symporter YagG; Provisional

Probab=99.05  E-value=4.4e-09  Score=105.36  Aligned_cols=134  Identities=9%  Similarity=0.103  Sum_probs=100.6

Q ss_pred             hhhhhhhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHh
Q 009978          121 AIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVG  200 (521)
Q Consensus       121 ~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~r~l~G  200 (521)
                      ..+++.++.--++...+.+.....++..++.+++++++||+|+|+.+..+.++.++..+...+...++.+.+++..++.|
T Consensus       251 ~~~y~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g  330 (444)
T PRK09669        251 ATLYYVNYVLLRPDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFN  330 (444)
T ss_pred             hhheeeeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHH
Confidence            33444443322334445566677788888999999999999999999888776665443332322256777888889999


Q ss_pred             hhhcchhhHHHHHHHhcCCch-------hhHHHHHHHHhhhhhhhHHHHHHHHHhhhccCc
Q 009978          201 LAEGVALPAMNNMVARWFPQT-------ERARAVAIAMGGFTSGNAIGLVLSPILMSQAGI  254 (521)
Q Consensus       201 ~g~~~~~~~~~~~i~~~~~~~-------~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gw  254 (521)
                      ++.+...+...++++|..+.+       +.|..++..+....+|..+|+.+++.+.+..|+
T Consensus       331 ~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy  391 (444)
T PRK09669        331 FIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVDY  391 (444)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            999999999999999988632       346678899999999999999999999887766

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.05  E-value=7.5e-09  Score=91.03  Aligned_cols=171  Identities=15%  Similarity=0.114  Sum_probs=119.5

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHH-HHH
Q 009978           98 VKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVAL-WSL  176 (521)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~-~~~  176 (521)
                      .+++.++++.+....+....  ..-..+.+.+|+|+...+.+.+....-.++.+++.|.++||+|++...+.+..+ ..+
T Consensus       266 fw~~~iicv~yyva~fPFi~--lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~  343 (459)
T KOG4686|consen  266 FWVLVIICVLYYVAWFPFIT--LGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLL  343 (459)
T ss_pred             HHHHHHHHHHHHHHHHHHhh--hhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHH
Confidence            34455555555444443222  223346788999999999999988888899999999999999999776655444 334


Q ss_pred             HHhhhhhccccchHHHHHHHHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHhhhccC---
Q 009978          177 ATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAG---  253 (521)
Q Consensus       177 ~~~l~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g---  253 (521)
                      +-....+.    .+.=+++..+.|+............++...|+++.|.+.|..+...++|..+.|++++.+.+.-|   
T Consensus       344 ~H~~l~Ft----~lsPy~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~  419 (459)
T KOG4686|consen  344 GHSGLFFT----FLSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYD  419 (459)
T ss_pred             HhhhHHhh----hccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchh
Confidence            44443332    33335566777888776555567788889999999999999999999999999999999998654   


Q ss_pred             chhHH-HHHHHHHHHHHHHHHH
Q 009978          254 IFGPF-VIFGLSGFLWVLVWLS  274 (521)
Q Consensus       254 w~~~f-~~~~~~~~i~~i~~~~  274 (521)
                      |--+| ++.+.+++....+.+.
T Consensus       420 ~le~ffl~~~~~aL~svgil~~  441 (459)
T KOG4686|consen  420 NLEAFFLIIGLMALTSVGILFY  441 (459)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhh
Confidence            43334 3344444444433333

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.05  E-value=4.6e-09  Score=104.68  Aligned_cols=151  Identities=16%  Similarity=0.095  Sum_probs=123.8

Q ss_pred             HHHHHHHhhhhhhhhhhhhhhhhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHHHHHHHhhhhhc
Q 009978          105 ALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWA  184 (521)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~l~~~~  184 (521)
                      .+..++............+++.++.--++...+.+..+..++..++.+++++++||+|+|+++..+.++.+++.++..+.
T Consensus       231 ~~~~~~~~~~~~~~~~~~~y~~~~vl~~~~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~  310 (428)
T PF13347_consen  231 LLAFFLQWLAFALMNTFLPYYFTYVLGNEGLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFL  310 (428)
T ss_pred             HHHHHHHHhhhhhhhhHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHH
Confidence            33344444555555666667666643344678888889999999999999999999999999999999999999988887


Q ss_pred             cccchHHHHHHHHHHhhhhcchhhHHHHHHHhcCCch-------hhHHHHHHHHhhhhhhhHHHHHHHHHhhhccCch
Q 009978          185 ADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQT-------ERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIF  255 (521)
Q Consensus       185 ~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~-------~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gw~  255 (521)
                      ..++.+.+++..++.|++.+...+...++++|..+.+       +.|..+|..+....+|..+++.+.+.+.+..|+.
T Consensus       311 ~~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~Gy~  388 (428)
T PF13347_consen  311 GPGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALVGYD  388 (428)
T ss_pred             HhhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhCcC
Confidence            3248999999999999999999999999999998743       3588999999999999999999999888766543

>TIGR00901 2A0125 AmpG-related permease

Probab=99.04  E-value=1.7e-09  Score=105.19  Aligned_cols=123  Identities=15%  Similarity=0.115  Sum_probs=98.5

Q ss_pred             hhhhhhhhhhhhhhhhhcCCcchhhHHHHHHH-HHHHHhhhhhHHHHhHhcchHHHHHHHHHHHHHHhhhhhcc--c---
Q 009978          113 ADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFL-WGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAA--D---  186 (521)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~-~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~l~~~~~--~---  186 (521)
                      ..........|.+.+++|.++.+.+.+.++.. ++..++.+++|++.||+|+|+.+..+.++.+++..+..+..  .   
T Consensus       223 ~~~~~~~~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  302 (356)
T TIGR00901       223 LGDSAATVLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHD  302 (356)
T ss_pred             HHHHHHHHHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence            33334445566666679999999998888665 67789999999999999999999888888777666544321  0   


Q ss_pred             ----cchHHHHHHHHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhh
Q 009978          187 ----TSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFT  235 (521)
Q Consensus       187 ----~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~  235 (521)
                          ++.+.+..+.++.+++.+...+...+++.|.+|+++||+.+|+.+...+
T Consensus       303 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~  355 (356)
T TIGR00901       303 GITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA  355 (356)
T ss_pred             ccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence                2456677788899999999999999999999999999999999887654

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.03  E-value=1.7e-09  Score=99.98  Aligned_cols=147  Identities=17%  Similarity=0.143  Sum_probs=118.6

Q ss_pred             hCCCcccchhHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHH
Q 009978          355 YHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIG  434 (521)
Q Consensus       355 ~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  434 (521)
                      .+-+..+.|++++...+.+++.+++.|.+.||+|+|         ..+.+++..+......+.+.++.++.++.=.+-+.
T Consensus       101 ~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~---------ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgv  171 (464)
T KOG3764|consen  101 LDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYK---------IPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGV  171 (464)
T ss_pred             ccccccchhHHHHHHHHHHHHhcccchhhHHHhccc---------cHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhh
Confidence            345667899999999999999999999999999999         56677888888888888888877765555444444


Q ss_pred             HHhhhhhhhHHHHHhhhcc--chhhHHhHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHhccC
Q 009978          435 MKSFSHSGFLVNLQEIAPQ--YSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYIIFSTG  511 (521)
Q Consensus       435 ~~~~~~~~~~~~~~~~~~~--~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  511 (521)
                      ...+......+...+.+|+  +|++++|+......+|..+||+++|.++|..| +...|+++++++++-..+.++.-+.
T Consensus       172 gsA~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~G-k~aPFlVL~~v~Lld~~L~l~vi~p  249 (464)
T KOG3764|consen  172 GSAFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAG-KSAPFLVLAIVLLLDGALQLLVIEP  249 (464)
T ss_pred             hHHHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcC-CcCcHHHHHHHHHHHHHHHHheeCc
Confidence            4444455555666666663  68999999999999999999999999999998 9999999999988877776665444

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=99.01  E-value=3.5e-09  Score=96.69  Aligned_cols=131  Identities=18%  Similarity=0.182  Sum_probs=98.9

Q ss_pred             HHHHHHHhhhhhHHHHhHhcchHHHHHHHHHHHHHHhhhhhccccchH--HHHHHHHHHhhhhcchhhHHHHHHHhcCCc
Q 009978          143 FLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLL--ALLAMRAVVGLAEGVALPAMNNMVARWFPQ  220 (521)
Q Consensus       143 ~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~l~~~~~~~~~~--~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~  220 (521)
                      ..+.-..|.++.+++.||+|||+.+..+.+++++..++......+|..  +++.+|++...    .+.+.+.|..|.+|.
T Consensus       390 tslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg----~fqvaYvYtPEVyPT  465 (528)
T KOG0253|consen  390 TSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISG----AFQVAYVYTPEVYPT  465 (528)
T ss_pred             HHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhc----hheEEEEecCcccch
Confidence            345556788899999999999999999999999998877666333432  34556665543    355678899999999


Q ss_pred             hhhHHHHHHHHhhhhhhhHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHhcCCC
Q 009978          221 TERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSST  279 (521)
Q Consensus       221 ~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gw~~~f~~~~~~~~i~~i~~~~~~~~~  279 (521)
                      .-|+...|..+.+..+|.++.|+++  +.....-..+..+.+.++++..+...+++-|+
T Consensus       466 avRatgvGtcSsmaRIggI~~p~iA--~~~e~s~sl~i~vy~~~~ilagIavcffPiEt  522 (528)
T KOG0253|consen  466 AVRATGVGTCSSMARIGGIFSPVIA--MRAELSTSLPIFVYGALFILAGIAVCFFPIET  522 (528)
T ss_pred             hhhhcchhhhhhHHhhhhhhhhHHH--HHhccceeehHHHHHHHHHHHHHHheeeeecc
Confidence            9999999999999999999999999  33333444566667777777766666654443

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.01  E-value=2.3e-08  Score=112.45  Aligned_cols=185  Identities=15%  Similarity=0.001  Sum_probs=114.9

Q ss_pred             HHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhCCC-cccchhHhHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 009978          319 RLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFN----FVYHID-LRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTS  393 (521)
Q Consensus       319 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~----~~~g~~-~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~  393 (521)
                      .+++++.++.+++..++..++.+.....++.+..    +..+.+ ....++..++..+..++.+++.|+++||+++|+..
T Consensus         6 ~l~~~~~f~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~   85 (1140)
T PRK06814          6 YLMKSRRFAPLFWTQFFGAFNDNFLKNALVILILYGLSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKYDKAKLA   85 (1140)
T ss_pred             hhhhccccHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHH
Confidence            5677888877777776666654433222222211    111111 13467777788888899999999999999998310


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhhhhhhhHHHHHhhhc-cchhhHHhHHHHHHHHHHHH
Q 009978          394 VTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAIL  472 (521)
Q Consensus       394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~  472 (521)
                           +.+............+.. ..++.+.+++..++.+...++..+...+++.+..+ ++++.++|+.++...+|.++
T Consensus        86 -----~~~~~~~~~~~~~~~~~~-~~~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~i  159 (1140)
T PRK06814         86 -----KILKFAEIGIAALAIYGF-HLNSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILL  159 (1140)
T ss_pred             -----HHHHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHH
Confidence                 011111122222222222 22445555555555454555566666667676666 68999999999999999999


Q ss_pred             HHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHhcc
Q 009978          473 GTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYIIFST  510 (521)
Q Consensus       473 ~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  510 (521)
                      ||.++|++.+..| +...|+..+++.+++.++.+.+++
T Consensus       160 gp~l~g~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  196 (1140)
T PRK06814        160 GTIIGGLATISGN-FVILVALLMGIAVLGWLASLFIPK  196 (1140)
T ss_pred             HHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHHhhCCC
Confidence            9999999999876 777775555555555444444443

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.00  E-value=1.2e-08  Score=84.13  Aligned_cols=133  Identities=15%  Similarity=0.155  Sum_probs=90.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhhhhhhhHH
Q 009978          366 SAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLV  445 (521)
Q Consensus       366 ~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  445 (521)
                      .+...++..++.++.+++.||+++|+         ....+.....+..+.....++.+......++.....+...+....
T Consensus         4 ~~~~~~~~~~~~~~~g~~~d~~g~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~   74 (141)
T TIGR00880         4 LAGYALGQLIYSPLSGLLTDRFGRKP---------VLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAA   74 (141)
T ss_pred             EEeehhHHHHHHhhHHHHHhhcchhH---------HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            44556778889999999999999882         223333333333333333344444444434433334444555666


Q ss_pred             HHHhhhc-cchhhHHhHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHh
Q 009978          446 NLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYIIF  508 (521)
Q Consensus       446 ~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  508 (521)
                      ...+..| ++|+++.++.+....++..++|.+.+.+.+..+ +...+.+.+.+.+++.+.....
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  137 (141)
T TIGR00880        75 LIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLG-WRAPFLFLAILALAAFILLAFL  137 (141)
T ss_pred             HHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccc-hHHHHHHHHHHHHHHHHHHhhc
Confidence            6667666 589999999999999999999999999998876 8788887777766666555444

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.00  E-value=4.3e-08  Score=90.01  Aligned_cols=162  Identities=17%  Similarity=0.120  Sum_probs=130.1

Q ss_pred             HhhhhhhhhhhhhhhhhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHh-cchHHHHHHHHHHHHHHhhhhhccccch
Q 009978          111 CNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYY-GGKIIMAWGVALWSLATFLTPWAADTSL  189 (521)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~-Grr~~~~~~~~~~~~~~~l~~~~~~~~~  189 (521)
                      ..+..+....-+|.+..|.|+|..+.|++.+...+.....++..-.+++|. ++|+..+...+++.++.+.+.+.+.+++
T Consensus       220 qS~~~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~~~  299 (395)
T COG2807         220 QSLLYYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQLP  299 (395)
T ss_pred             hHHHHHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhhHH
Confidence            344445666679999999999999999999999999999999999999975 6777888888888888887777732232


Q ss_pred             HHHHHHHHHHhhhhcchhhHHHHHHHhcCCc-hhhHHHHHHHHhhhhhhhHHHHHHHHHhhhccC-chhHHHHHHHHHHH
Q 009978          190 LALLAMRAVVGLAEGVALPAMNNMVARWFPQ-TERARAVAIAMGGFTSGNAIGLVLSPILMSQAG-IFGPFVIFGLSGFL  267 (521)
Q Consensus       190 ~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g-w~~~f~~~~~~~~i  267 (521)
                      +..   .++.|+|.|..++.....+.+..++ ++-++-.++.+....+=..+||.+.|++-|..| |+......+...++
T Consensus       300 ~lw---~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~  376 (395)
T COG2807         300 ILW---ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATLL  376 (395)
T ss_pred             HHH---HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHH
Confidence            222   4899999999999999999988754 445667777777777878899999999988664 99998888888777


Q ss_pred             HHHHHHHh
Q 009978          268 WVLVWLSA  275 (521)
Q Consensus       268 ~~i~~~~~  275 (521)
                      ..+..+..
T Consensus       377 m~i~Gl~a  384 (395)
T COG2807         377 MLIFGLRA  384 (395)
T ss_pred             HHHHHhhc
Confidence            76666554

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=98.98  E-value=4.5e-10  Score=105.96  Aligned_cols=177  Identities=13%  Similarity=0.037  Sum_probs=129.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHH
Q 009978          326 TWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIG  405 (521)
Q Consensus       326 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~  405 (521)
                      ...+.+...+...--+.+...++. .++.++.++...|++.....+...+.++++|++.||+.|++         ++.++
T Consensus        35 l~il~~vnlmny~Dr~~iagv~~~-v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~---------v~~vG  104 (493)
T KOG1330|consen   35 LVILCLVNLMNYADRYTIAGVLKE-VQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKR---------VIAVG  104 (493)
T ss_pred             HHHHHHHHHHHHhhhhhhhhhhHH-HHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcce---------EEeeH
Confidence            334444444444444444443333 33448999999999999999999999999999999999983         34444


Q ss_pred             HHHHHHHHHHHhccchhHHHHHHHHHHHHHHhhhhhhhHHHHHhhhcc-chhhHHhHHHHHHHHHHHHHHHHHHHHhhcc
Q 009978          406 FIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQ-YSGVLHGISNTAGTFAAILGTVGAGFFVELV  484 (521)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~  484 (521)
                      ..+-..+.++-.+....|.+.++=.+.+.......+....++.+.+|+ +|++++++++....+|..+|-..++.+.+..
T Consensus       105 ~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~  184 (493)
T KOG1330|consen  105 IFIWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLT  184 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCc
Confidence            444444444444445556555554444444455667777888888885 9999999999999999999999999999988


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHhccCc
Q 009978          485 GSFQGFLLLTSLLYFLSALFYIIFSTGE  512 (521)
Q Consensus       485 g~~~~~~~~~~~~~~~~~~~~~~~~~~~  512 (521)
                      +.|++.|...+++.++..++.+++.++.
T Consensus       185 ~~Wr~af~~~avl~vi~~~L~~~f~~eP  212 (493)
T KOG1330|consen  185 FWWRWAFRGSAVLGVIVGLLVFLFVREP  212 (493)
T ss_pred             cceEEEEEeehHHHHHHHHHHHhhccCc
Confidence            8899999999999888777766665443

>PTZ00207 hypothetical protein; Provisional

Probab=98.94  E-value=1.3e-07  Score=95.64  Aligned_cols=157  Identities=13%  Similarity=0.089  Sum_probs=96.8

Q ss_pred             HHHHHHHHHHHHHHHHhCCCcccchhHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHhc
Q 009978          339 GFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTA  418 (521)
Q Consensus       339 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  418 (521)
                      ..+.+..+.+.. ++.+|++..+.+.+.++.. ......++.|++.||+|+|         .++.++.+...++.+....
T Consensus        42 ~~y~fsv~s~~L-~~~lgls~~~l~~i~svg~-~~g~~~lp~G~L~Dr~G~R---------~vllig~ll~~iG~ll~al  110 (591)
T PTZ00207         42 FMYAFNLISGAM-QARYNLTQRDLSTITTVGI-AVGYFLLPYSFIYDYLGPR---------PIFVLSMTVFCLGTLLFAL  110 (591)
T ss_pred             HHHHHHHHHHHH-HHHhCcCHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCcH---------HHHHHHHHHHHHHHHHHHH
Confidence            344555666655 5558999999888876633 3345667789999999999         3444444444444443333


Q ss_pred             c------chhHHHHHHHHHHHHHHhhhhhhhHHHHHhhhccchhhHHhHHHHHHHHHHHHHHHHHHHHhhcccchHHHHH
Q 009978          419 A------KSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLL  492 (521)
Q Consensus       419 ~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~  492 (521)
                      .      .+.+.+.+..++.+...+...+.......+.+|++||.+.|+......+|.++.+.+...+.+.  ++...|+
T Consensus       111 a~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~--~~~~~fl  188 (591)
T PTZ00207        111 TFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFPSNRGAVVAIMKTFTGLGSAILGSIQLAFFSD--NTSAYFF  188 (591)
T ss_pred             HhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hHHHHHH
Confidence            2      2334333333332322333334444455667899999999999999999998655555544442  3666777


Q ss_pred             HHHHHHHHHHHHHHHh
Q 009978          493 LTSLLYFLSALFYIIF  508 (521)
Q Consensus       493 ~~~~~~~~~~~~~~~~  508 (521)
                      +.+++.++..++.+.+
T Consensus       189 ~l~vl~~vv~ll~~~~  204 (591)
T PTZ00207        189 FLMSFALVVGILAIVF  204 (591)
T ss_pred             HHHHHHHHHHHHHHhh
Confidence            7776666655554443

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=98.92  E-value=5.9e-08  Score=92.03  Aligned_cols=157  Identities=31%  Similarity=0.495  Sum_probs=126.4

Q ss_pred             HhhhhhhhhhhhhhhhhhhcCCc--chhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHHHHHHHhhhhhccccc
Q 009978          111 CNADRVVMSVAIVPLSLAHGWSR--SFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTS  188 (521)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~s~--~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~l~~~~~~~~  188 (521)
                      ............+.+..+++.+.  .+.++..+.+.++..++.++.|.+.||+|||+.+..+.....++.++..+....+
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (338)
T COG0477          14 LGLDLGLLSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVG   93 (338)
T ss_pred             HHHhcchHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccch
Confidence            33555566777888888877776  5889999999999999999999999999999888888876666666666661124


Q ss_pred             hHHHHHHHHHHhhhhcchhhHHHHHHHhcCCc-hhhHHHHHHHHh-hhhhhhHHHHHHHHHhhhc--cCchhHHHHHHHH
Q 009978          189 LLALLAMRAVVGLAEGVALPAMNNMVARWFPQ-TERARAVAIAMG-GFTSGNAIGLVLSPILMSQ--AGIFGPFVIFGLS  264 (521)
Q Consensus       189 ~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~-~~r~~~~~~~~~-~~~~g~~~g~~l~~~l~~~--~gw~~~f~~~~~~  264 (521)
                      .+.+++.|+++|++.+...+...+++.++.|+ ++|+...+.... ...+|..+++.+++.+...  .+||..|.+....
T Consensus        94 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (338)
T COG0477          94 LALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALL  173 (338)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence            88999999999999999999999999999987 688999999888 5888889999887777654  5799866666655


Q ss_pred             HHH
Q 009978          265 GFL  267 (521)
Q Consensus       265 ~~i  267 (521)
                      ...
T Consensus       174 ~~~  176 (338)
T COG0477         174 GLL  176 (338)
T ss_pred             HHH
Confidence            443

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=98.91  E-value=1.4e-08  Score=93.35  Aligned_cols=125  Identities=16%  Similarity=0.137  Sum_probs=96.0

Q ss_pred             CCcccchhHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHH
Q 009978          357 IDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMK  436 (521)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  436 (521)
                      .+....|++-+.+.+..++.++.+|.++||+|||         .++.++++..++..+.+....+. ..++..=+.++..
T Consensus        65 ~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRk---------pvll~c~~~va~s~ll~~~S~~F-~afv~aR~l~Gi~  134 (451)
T KOG2615|consen   65 ASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRK---------PVLLACLIGVALSYLLWALSRNF-AAFVLARFLGGIF  134 (451)
T ss_pred             ccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCch---------HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhc
Confidence            3456688999999999999999999999999999         56667777777777777776666 2222212233334


Q ss_pred             hhhhhhhHHHHHhhhc-cchhhHHhHHHHHHHHHHHHHHHHHHHHhh---cccchHHHH
Q 009978          437 SFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVE---LVGSFQGFL  491 (521)
Q Consensus       437 ~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~---~~g~~~~~~  491 (521)
                      -.......+++.|+.+ |+|+.+++.+.+..++|.++||.++|++.+   ..|+|..++
T Consensus       135 kgnl~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~al  193 (451)
T KOG2615|consen  135 KGNLSVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFAL  193 (451)
T ss_pred             cCchHHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHH
Confidence            4445566777788776 699999999999999999999999999988   567665555

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=98.91  E-value=2e-05  Score=78.19  Aligned_cols=281  Identities=11%  Similarity=-0.006  Sum_probs=163.1

Q ss_pred             hhHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcCCcchhhHHHHHHHH-HHHHhhhhhHHHHhHhcchHHHHHHHHHH
Q 009978           96 ERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLW-GYLVSPIAGGTLVDYYGGKIIMAWGVALW  174 (521)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~-~~~i~~~~~G~l~dr~Grr~~~~~~~~~~  174 (521)
                      ..+..+..+.++.++..+..+..-..=..+.-. ...++.+..+=....+ +..+...+..++++++++.+++-+....+
T Consensus        21 ~E~~k~~~l~~m~f~i~f~y~~lR~~KD~lvvt-~~gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~F   99 (491)
T PF03219_consen   21 SELKKFLPLALMFFFILFNYTILRDLKDTLVVT-AQGAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIPF   99 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCeEEEe-cCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            345556666666666555444333322221111 1255666666554444 34555777899999999999887766666


Q ss_pred             HHHHhhhhhcc-------ccc----------------------hHHHHHHHHHHhhhhcchhh-HHHHHHHhcCCchhhH
Q 009978          175 SLATFLTPWAA-------DTS----------------------LLALLAMRAVVGLAEGVALP-AMNNMVARWFPQTERA  224 (521)
Q Consensus       175 ~~~~~l~~~~~-------~~~----------------------~~~l~~~r~l~G~g~~~~~~-~~~~~i~~~~~~~~r~  224 (521)
                      .....++++..       +++                      .|.+.+..++.-+-.....+ .-..+.+|.++.+|-.
T Consensus       100 ~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~eAK  179 (491)
T PF03219_consen  100 LGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEEAK  179 (491)
T ss_pred             HHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence            65555544431       111                      12222222333333233233 4688899999999999


Q ss_pred             HHHHHHHhhhhhhhHHHHHHHHHhhh---------ccCchhHHHHHH----HHHHHHHHHHHHhcCCCCCCCCCCchhHH
Q 009978          225 RAVAIAMGGFTSGNAIGLVLSPILMS---------QAGIFGPFVIFG----LSGFLWVLVWLSATSSTPDRHPQISKYEL  291 (521)
Q Consensus       225 ~~~~~~~~~~~~g~~~g~~l~~~l~~---------~~gw~~~f~~~~----~~~~i~~i~~~~~~~~~~~~~~~~~~~~~  291 (521)
                      |..+++..+.++|.+++..+..++.+         ...|...+....    +.+++...+.....++..+.+... +.+.
T Consensus       180 RfYpl~g~ganigli~sG~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~v~~~g~~i~~~~~~~~~~vl~~~~~~-~~~~  258 (491)
T PF03219_consen  180 RFYPLFGLGANIGLIFSGQLTSYFSSFLRKSLPAGVDAWELSLNSLMGIVLILGIVIILLYRYMNKNVLTDPRFY-PSAK  258 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccccc-hhhh
Confidence            99999999999999999999888877         123554332222    112222222222221111111100 0000


Q ss_pred             HHHHHhhccccccCCCCCCCCCCchHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccc----chhHhH
Q 009978          292 EYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQ----ASWFSA  367 (521)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----~~~~~~  367 (521)
                                 ..++++++....++++.++++|.+..+.+...++....+.+....-..+++.+. ++.+    .|....
T Consensus       259 -----------~~kk~k~k~s~~es~k~l~kS~yL~~Ia~lvi~Ygi~inLvE~~wK~~lk~~~~-~~~~ysafmG~~~~  326 (491)
T PF03219_consen  259 -----------KKKKKKPKMSLKESFKLLLKSKYLLCIALLVIAYGISINLVEVVWKSQLKQLYP-DPNDYSAFMGKFSS  326 (491)
T ss_pred             -----------cccccCCCccHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CchHHHHHHHHHHH
Confidence                       012233344556788889999999999888888888888887766667776443 3333    334455


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhc
Q 009978          368 VPWSVMAFTGYLGGLLSDMLIQR  390 (521)
Q Consensus       368 ~~~~~~~i~~~~~g~l~dr~~~~  390 (521)
                      ..++..++..++++.+.+|+|-+
T Consensus       327 ~tGivtii~~~l~~~iir~~GW~  349 (491)
T PF03219_consen  327 WTGIVTIIMMFLSSNIIRRFGWR  349 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHH
Confidence            55666666667888888888876

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=98.91  E-value=3.6e-08  Score=94.71  Aligned_cols=182  Identities=14%  Similarity=0.161  Sum_probs=135.3

Q ss_pred             HHhc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----CCcccchhHhHHHHHHHHHHHHHHHHHHHHH-HhcCCC
Q 009978          320 LLSK-MPTWSIIVANAMHSWGFFVILSWMPIYFNFVYH----IDLRQASWFSAVPWSVMAFTGYLGGLLSDML-IQRGTS  393 (521)
Q Consensus       320 ~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g----~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~-~~~~~~  393 (521)
                      .+++ |.++.+...-+.--++++++...+..|+....+    +|.+++.-+.+.+....-+..+++||++||+ |+|   
T Consensus        16 ~f~~Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~---   92 (498)
T COG3104          16 FFGQPRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTR---   92 (498)
T ss_pred             cCCCCchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchh---
Confidence            3443 457777788888889999999999999998888    9999888888887777778889999999997 555   


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHhccc--hhHHHHHHHHHHHHHHhhhhhhhHHHHHhhhc--c-chhhHHhHHHHHHHH
Q 009978          394 VTLTRKILQSIGFIAPGIALIGLTAAK--SPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP--Q-YSGVLHGISNTAGTF  468 (521)
Q Consensus       394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~g~~~g~~~~~~~~  468 (521)
                            ..+..+.++..++.+.+...+  ....+.+.+.+.....+..=+....+..+..|  + +|-..+++..+..++
T Consensus        93 ------~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNi  166 (498)
T COG3104          93 ------RTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINI  166 (498)
T ss_pred             ------HHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeeh
Confidence                  234455555566666555542  23333333333223334444555566666665  2 577888999999999


Q ss_pred             HHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHhccC
Q 009978          469 AAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYIIFSTG  511 (521)
Q Consensus       469 g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  511 (521)
                      |+.++|.+.+++.++.| |...|..+++-+..+.+.+++.++.
T Consensus       167 Gsl~~p~i~~~~~~~~g-~~~gF~~aavGm~~gl~~f~~~~r~  208 (498)
T COG3104         167 GSLIAPIITGLLAINYG-WHVGFGLAAVGMIIGLVIFLLGRRH  208 (498)
T ss_pred             HHHHHHHHHHHHHHhhC-HHHHHHHHHHHHHHHHHHHHHccch
Confidence            99999999999999998 9999999999999999888877653

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.89  E-value=1.7e-07  Score=90.81  Aligned_cols=148  Identities=17%  Similarity=0.110  Sum_probs=120.4

Q ss_pred             HHHHHhhhhhhhhhhhhhhhhh-hcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHHHHHHHhhhhhcc
Q 009978          107 ALALCNADRVVMSVAIVPLSLA-HGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAA  185 (521)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~l~~~~~  185 (521)
                      ..++.....+..+....++.+. +|.++.+..+.......+.+++.+++.++.+|+|+|+++.++.++.+++.++..+.+
T Consensus       244 ~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~  323 (467)
T COG2211         244 MNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTP  323 (467)
T ss_pred             HHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhc
Confidence            4444444445555555555544 577777777888888888888899999999999999999999999999999988885


Q ss_pred             ccchHHHHHHHHHHhhhhcchhhHHHHHHHhcCCc-------hhhHHHHHHHHhhhhhhhHHHHHHHHHhhhccCc
Q 009978          186 DTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQ-------TERARAVAIAMGGFTSGNAIGLVLSPILMSQAGI  254 (521)
Q Consensus       186 ~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~-------~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gw  254 (521)
                      .++.+.+++..++.++|.+...+...++++|..+-       ++-|...+.+....=+|..++..+.++..+..|+
T Consensus       324 ~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~~Gy  399 (467)
T COG2211         324 AGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGAIGY  399 (467)
T ss_pred             CcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            56788899999999999999999999999998753       2347788888888889999999888888876653

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.87  E-value=1.1e-07  Score=94.13  Aligned_cols=176  Identities=13%  Similarity=0.073  Sum_probs=117.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhHhHHHHHHHHHHHHHHHHHHHH----HHhcCCCcchhHHHH
Q 009978          326 TWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDM----LIQRGTSVTLTRKIL  401 (521)
Q Consensus       326 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr----~~~~~~~~~~~~~~~  401 (521)
                      +..+....+...+++.....+++.|+++ +|.++...+.+..+..+..++..++.|+++||    +|||+        ..
T Consensus         6 li~~~~~~~Giq~~~~l~~~~l~~yl~~-lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRr--------p~   76 (477)
T TIGR01301         6 LLRVASVAAGVQFGWALQLSLLTPYVQE-LGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRR--------PF   76 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChH--------HH
Confidence            3445555566667777778888988877 89999999999999999999999999999995    88882        23


Q ss_pred             HHHHHHHHHHHHHHHhccchh-----------------HHHHHHHHHHHHHHhhhhhhhHHHHHhhhcc-c--hhhHHhH
Q 009978          402 QSIGFIAPGIALIGLTAAKSP-----------------VMASAWLTLAIGMKSFSHSGFLVNLQEIAPQ-Y--SGVLHGI  461 (521)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~g~~~g~  461 (521)
                      +..+.....+.+..+....+.                 +..+..+.+.-.......+...++..|..|+ +  ++.+.++
T Consensus        77 il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~  156 (477)
T TIGR01301        77 IAAGAALVAFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAY  156 (477)
T ss_pred             HHHHHHHHHHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHH
Confidence            333334444444444332221                 1112222222233344445556677777773 3  3689999


Q ss_pred             HHHHHHHHHHHHHHHHHHH--hhcc------------cchHHHHHHHHHHHHHHHHHHHHhcc
Q 009978          462 SNTAGTFAAILGTVGAGFF--VELV------------GSFQGFLLLTSLLYFLSALFYIIFST  510 (521)
Q Consensus       462 ~~~~~~~g~~~~~~~~g~l--~~~~------------g~~~~~~~~~~~~~~~~~~~~~~~~~  510 (521)
                      .+....+|..+|+.+++..  .+..            .++...|++.+++.+++.++..+..+
T Consensus       157 ~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~  219 (477)
T TIGR01301       157 FSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVK  219 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeee
Confidence            9999999999999998875  2221            14677888888877777766655433

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>TIGR00805 oat sodium-independent organic anion transporter

Probab=98.86  E-value=2.8e-08  Score=102.97  Aligned_cols=153  Identities=12%  Similarity=0.074  Sum_probs=101.4

Q ss_pred             HHHHHHhCCCcccchhHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHhccc--------
Q 009978          349 IYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAK--------  420 (521)
Q Consensus       349 ~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------  420 (521)
                      .-++++++++..+.|++.+...++.+++.++.+++.||.+|++..         .++.++.+++.++....+        
T Consensus        57 ~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i---------~~g~ll~~lg~ll~alphf~~~~y~~  127 (633)
T TIGR00805        57 TTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVI---------GIGCAIMGLGSFLLSLPHFLSGRYSY  127 (633)
T ss_pred             hhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEE---------EecHHHHHHHHHHHhChHHhcCCccc
Confidence            344555999999999999999999999999999999999988432         222222222222221110        


Q ss_pred             -----------------------------------------h--hHHHHHHHHHHHHHHhhhhhhhHHHHHhhhc-cchh
Q 009978          421 -----------------------------------------S--PVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSG  456 (521)
Q Consensus       421 -----------------------------------------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g  456 (521)
                                                               +  ...+++.-++.+...+...+....++.|..| ++++
T Consensus       128 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~  207 (633)
T TIGR00805       128 STTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSP  207 (633)
T ss_pred             cccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccH
Confidence                                                     0  1112222222222233334455567777776 6899


Q ss_pred             hHHhHHHHHHHHHHHHHHHHHHHHhhcc---------------------cchHHHHHHHHHHHHHHHHHHHHhcc
Q 009978          457 VLHGISNTAGTFAAILGTVGAGFFVELV---------------------GSFQGFLLLTSLLYFLSALFYIIFST  510 (521)
Q Consensus       457 ~~~g~~~~~~~~g~~~~~~~~g~l~~~~---------------------g~~~~~~~~~~~~~~~~~~~~~~~~~  510 (521)
                      ...|+.+....+|..+|+.++|++.+..                     |.|+..|++.+++.++..+.++.+++
T Consensus       208 ~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~~~p~  282 (633)
T TIGR00805       208 LYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPFFFFPK  282 (633)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence            9999999999999999999999988643                     23666788877777666655555543

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PRK11462 putative transporter; Provisional

Probab=98.86  E-value=1.7e-07  Score=93.96  Aligned_cols=134  Identities=14%  Similarity=0.125  Sum_probs=91.6

Q ss_pred             hhhhhhhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHh
Q 009978          121 AIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVG  200 (521)
Q Consensus       121 ~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~r~l~G  200 (521)
                      ....+.+...-++...+.+.+.+.++.+++.+++++++||+|+|+++..+..+.++..++..+....+.+.+++.-++.|
T Consensus       250 ~~~y~~~y~~g~~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g  329 (460)
T PRK11462        250 AMMYYVTWILGTPEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIG  329 (460)
T ss_pred             HhhhhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHH
Confidence            33344443333444556777788889999999999999999999987765554444333333332223334455556778


Q ss_pred             hhhcchhhHHHHHHHhcCC-------chhhHHHHHHHHhhhhhhhHHHHHHHHHhhhccCc
Q 009978          201 LAEGVALPAMNNMVARWFP-------QTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGI  254 (521)
Q Consensus       201 ~g~~~~~~~~~~~i~~~~~-------~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gw  254 (521)
                      ++.+...+...++++|..+       +++.|..++.......+|..+|+.+++.+.+..|+
T Consensus       330 ~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~~Gy  390 (460)
T PRK11462        330 VLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYGGY  390 (460)
T ss_pred             HHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            8877777777888888876       23345666777888999999999999988876555

>TIGR00788 fbt folate/biopterin transporter

Probab=98.82  E-value=7e-08  Score=96.86  Aligned_cols=136  Identities=13%  Similarity=0.147  Sum_probs=114.5

Q ss_pred             hhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHHHHHHHhhhhhcc--------ccchHHHHHHHHH
Q 009978          127 LAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAA--------DTSLLALLAMRAV  198 (521)
Q Consensus       127 ~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~l~~~~~--------~~~~~~l~~~r~l  198 (521)
                      +.+|.++.++|++.....++..++....+++.+|++.|+++.++.++.+++.+...+..        .++.+.++..-++
T Consensus       281 ~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l  360 (468)
T TIGR00788       281 QCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSII  360 (468)
T ss_pred             ccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHH
Confidence            56899999999999999999999999999999999999999999999988875543110        0233455566788


Q ss_pred             HhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHhhhccC-----chhHHHHHH
Q 009978          199 VGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAG-----IFGPFVIFG  262 (521)
Q Consensus       199 ~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g-----w~~~f~~~~  262 (521)
                      .+++.+........++.+..|+++++..+++.+...++|..+++.+++.+.+..|     .+..++...
T Consensus       361 ~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~i~  429 (468)
T TIGR00788       361 AEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNNLWLLIL  429 (468)
T ss_pred             HHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHH
Confidence            8999888888999999999999999999999999999999999999999998777     554444433

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=98.81  E-value=3.4e-08  Score=94.93  Aligned_cols=152  Identities=16%  Similarity=0.186  Sum_probs=134.8

Q ss_pred             hhhhhhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhh
Q 009978          122 IVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGL  201 (521)
Q Consensus       122 ~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~r~l~G~  201 (521)
                      +-.-.||.+..+...|........+-++.-++.+++.+|+|+-+++.+++.+..+=.+.....  +|.|..+..-+++|+
T Consensus       394 LfWHled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L--~n~W~vLPieilqgi  471 (618)
T KOG3762|consen  394 LFWHLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYL--QNPWMVLPIEILQGI  471 (618)
T ss_pred             HHHHHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHh--cCchheeeHHHHHHH
Confidence            334467788888888988888888888899999999999999999999999999888888888  999999999999999


Q ss_pred             hhcchhhHHHHHHHhcCCchhhHHHHHHHH-hhhhhhhHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHh
Q 009978          202 AEGVALPAMNNMVARWFPQTERARAVAIAM-GGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSA  275 (521)
Q Consensus       202 g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~g~~~g~~l~~~l~~~~gw~~~f~~~~~~~~i~~i~~~~~  275 (521)
                      ..+..+.+..+|+++..|++-|..+.++.+ ...++|-.+|.+++|.+.+.+|-|..|.+.++.+++.+++....
T Consensus       472 t~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~~~i  546 (618)
T KOG3762|consen  472 THALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLALFISI  546 (618)
T ss_pred             HHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999975 55679999999999999999999999999999888766655443

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=98.79  E-value=2.9e-07  Score=86.00  Aligned_cols=166  Identities=19%  Similarity=0.220  Sum_probs=133.3

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhhhhhhhh-hcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHHHHHH
Q 009978           99 KVVSMLALALALCNADRVVMSVAIVPLSLA-HGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLA  177 (521)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~~~  177 (521)
                      +.+....+..|+......+....++.+.++ .|.+..+.+...+.+..+..+|.++..++..|+...|.+.+..++..+-
T Consensus       236 ~~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill  315 (422)
T COG0738         236 KHLRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILL  315 (422)
T ss_pred             hHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence            334445556677777777777777777777 7889999999999999999999999999999999999999888887777


Q ss_pred             HhhhhhccccchHHHHHHHHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHhhhccCchhH
Q 009978          178 TFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGP  257 (521)
Q Consensus       178 ~~l~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gw~~~  257 (521)
                      ++..++.  ++...++ +-++.|+..+..+|...+...+..|  +.....|..-.+..+|..+-|.+.|++.|..|-...
T Consensus       316 ~~~~~l~--~g~v~~~-~l~~ig~F~simfPTIfslal~~l~--~~ts~~s~~l~maivGGAiiP~l~G~i~d~~g~~~~  390 (422)
T COG0738         316 LLAVALI--GGVVALY-ALFLIGLFNSIMFPTIFSLALKNLG--EHTSVGSGLLVMAIVGGAIIPPLQGVIADMFGIQLT  390 (422)
T ss_pred             HHHHHHh--cChHHHH-HHHHHHHHhHHHHHHHHHHHHhccC--ccccccceeeeeheecchHHHHHHHHHHHhhhhHHH
Confidence            7777777  7755544 4578899999999999999999997  334455556666778999999999999999998888


Q ss_pred             HHHHHHHHHHHH
Q 009978          258 FVIFGLSGFLWV  269 (521)
Q Consensus       258 f~~~~~~~~i~~  269 (521)
                      +.....++.+.+
T Consensus       391 ~~~~pllc~lyV  402 (422)
T COG0738         391 FLIVPLLCYLYV  402 (422)
T ss_pred             HHHHHHHHHHHH
Confidence            775555555544

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=98.78  E-value=0.00019  Score=69.33  Aligned_cols=281  Identities=10%  Similarity=-0.020  Sum_probs=164.7

Q ss_pred             chhHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhh---cCCcchhhHHHHHHHH-HHHHhhhhhHHHHhHhcchHHHHHH
Q 009978           95 SERVKVVSMLALALALCNADRVVMSVAIVPLSLAH---GWSRSFSGIVQSSFLW-GYLVSPIAGGTLVDYYGGKIIMAWG  170 (521)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~s~~~~g~~~s~~~~-~~~i~~~~~G~l~dr~Grr~~~~~~  170 (521)
                      +..+..+..+.+..++..+..+..-    .+.+.+   ...++.+.++-+..-+ +..+..++.+++.+++.+.+++-+.
T Consensus        23 r~E~~kflpl~Ll~f~I~~ny~~lR----~lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~   98 (509)
T COG3202          23 RYELKKFLPLALLFFCILFNYNLLR----SLKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYII   98 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH----HhhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHH
Confidence            3345555555555555555443332    334444   3456677788777777 6678888899999999999998877


Q ss_pred             HHHHHHHHhhhhhcc-------ccc-----------------------hHHHHHHHHHHhhhhcchhh-HHHHHHHhcCC
Q 009978          171 VALWSLATFLTPWAA-------DTS-----------------------LLALLAMRAVVGLAEGVALP-AMNNMVARWFP  219 (521)
Q Consensus       171 ~~~~~~~~~l~~~~~-------~~~-----------------------~~~l~~~r~l~G~g~~~~~~-~~~~~i~~~~~  219 (521)
                      ...+....+++++..       +++                       .|..-+..++.-+-...... .-.....|.+.
T Consensus        99 ~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt  178 (509)
T COG3202          99 LGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITT  178 (509)
T ss_pred             HHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            777766666666541       111                       12222233333332233333 55678899999


Q ss_pred             chhhHHHHHHHHhhhhhhhHHHHHHHHHhhhcc-C---------chhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchh
Q 009978          220 QTERARAVAIAMGGFTSGNAIGLVLSPILMSQA-G---------IFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKY  289 (521)
Q Consensus       220 ~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~-g---------w~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~  289 (521)
                      .+|-.|.+++++.+.+++..++..+..++..+. .         -+..+.+.++.+++...+..+..+...+.+....+.
T Consensus       179 ~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~~~~~~~~~~~~~~~~~~~vi~~~~~i~~~l~~~~~r~il~~~~f~~~~  258 (509)
T COG3202         179 IEEAKRFYPLFGLGANISLLLSGEVTSWLSKHRDALASEFKDLLLQILFIVIVILGIIAILLYRYINRNVLTDPLFYLRA  258 (509)
T ss_pred             HHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhHHH
Confidence            899999999999999999999998888886522 1         233444444444444444444433222221110000


Q ss_pred             HHHHHHHhhccccccCCCCCCCCCCchHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccc---chhHh
Q 009978          290 ELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQ---ASWFS  366 (521)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~  366 (521)
                      ..           ..+.++.+-...++++.+.++|.++.+.+...+++.+.+.+....-.-.++.+....+.   .+.+.
T Consensus       259 ~~-----------kk~~~k~k~~~~~s~k~i~~SkyL~~ial~vl~Y~v~inLvE~~wKs~ik~~~~~~~~~~~f~~~~~  327 (509)
T COG3202         259 KK-----------KKKKKKLKLGLIESFKMILRSKYLGAIALLVLAYGVSINLVEGVWKSGIKELYPTTNEYTAFMGRFQ  327 (509)
T ss_pred             hc-----------ccccccccCcHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcCChhHHHHHHHHHH
Confidence            00           00122223345567888899999998888888888877777654444444433322222   23333


Q ss_pred             HHHHHH-HHHHHHHHHHHHHHHHhc
Q 009978          367 AVPWSV-MAFTGYLGGLLSDMLIQR  390 (521)
Q Consensus       367 ~~~~~~-~~i~~~~~g~l~dr~~~~  390 (521)
                      ...++. .++....++.+.+|.|-.
T Consensus       328 ~~tgvv~~v~~~~~~s~~ir~~GW~  352 (509)
T COG3202         328 IWTGVVSLVVFLFPGSNLIRRVGWF  352 (509)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHhhHH
Confidence            344444 333446677777777755

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.71  E-value=2e-07  Score=92.13  Aligned_cols=175  Identities=13%  Similarity=0.061  Sum_probs=123.8

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhhhhhhhh-hcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcc---------hHHHH
Q 009978           99 KVVSMLALALALCNADRVVMSVAIVPLSLA-HGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGG---------KIIMA  168 (521)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Gr---------r~~~~  168 (521)
                      ..++.+.+..+........+....|.+.++ +|.+..+.|++.++..+...+..+++|.++||.-+         |..-.
T Consensus       258 ~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~  337 (466)
T KOG2532|consen  258 PPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNT  337 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHh
Confidence            445666677777777777778888887665 89999999999999999999999999999999855         22334


Q ss_pred             HHHHHHHHHHhhhhhccccch-HHHHHHHHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHH
Q 009978          169 WGVALWSLATFLTPWAADTSL-LALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPI  247 (521)
Q Consensus       169 ~~~~~~~~~~~l~~~~~~~~~-~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~  247 (521)
                      ++....++..+..++....+. ..+.+.-+..++. |...+....-..|.. +++-+..+|+.+....+...++|.+.+.
T Consensus       338 i~~~~~ai~l~~l~~~~~~~~~~a~~~l~~~~~~~-g~~~~Gf~~~~~~~a-pq~a~~l~g~~~~~~~~~~~~~P~~vg~  415 (466)
T KOG2532|consen  338 IAFGGPAVFLLVLAFTSDEHRLLAVILLTIAIGLS-GFNISGFYKNHQDIA-PQHAGFVMGIINFVGALAGFIAPLLVGI  415 (466)
T ss_pred             HHHHHHHHHHHeeeecCCCcchHHHHHHHHHHHHc-ccchhhhHhhhhhcc-chHHHHHHHHHHHHHHHHHHHHHHheee
Confidence            455555566666666532122 2222222222222 333333444444444 5788999999999999999999999999


Q ss_pred             hhh---ccCchhHHHHHHHHHHHHHHHHHHh
Q 009978          248 LMS---QAGIFGPFVIFGLSGFLWVLVWLSA  275 (521)
Q Consensus       248 l~~---~~gw~~~f~~~~~~~~i~~i~~~~~  275 (521)
                      +..   ...|+.+|++.+++.++..++..++
T Consensus       416 ~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f  446 (466)
T KOG2532|consen  416 IVTDNTREEWRIVFLIAAGILIVGNIIFLFF  446 (466)
T ss_pred             EeCCCCHHHHHHHHHHHHHHHHHhchheeEe
Confidence            984   2369999999999888877655544

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=98.71  E-value=1.2e-05  Score=77.53  Aligned_cols=374  Identities=10%  Similarity=0.031  Sum_probs=191.3

Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhhhhh--hcCCcchhhHHHHHHHHHHHHhhhhhHHHHh-----HhcchHHHHHH-HHHH
Q 009978          103 MLALALALCNADRVVMSVAIVPLSLA--HGWSRSFSGIVQSSFLWGYLVSPIAGGTLVD-----YYGGKIIMAWG-VALW  174 (521)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~d-----r~Grr~~~~~~-~~~~  174 (521)
                      ++.+.+++.+.-.+.....+|.+.++  -+.|.+|.|...- ....+. .-++|.++.|     |+||||.-++- -.+.
T Consensus         4 lL~~LY~lQGiP~GL~~gsiPflL~~~~~~~sy~q~~~fSl-a~~PfS-lKlLWaPiVDs~y~~~~GRRKSWiiP~Q~l~   81 (544)
T PF13000_consen    4 LLVLLYFLQGIPLGLAFGSIPFLLQSMAKKVSYSQQAIFSL-ASYPFS-LKLLWAPIVDSVYSKRIGRRKSWIIPIQYLS   81 (544)
T ss_pred             HHHHHHHHcCcccccccccchhhhccccCCCChhHheeeee-eechhH-HHHhhhhhhhhhcccccCCcchhhhHHHHHH
Confidence            44556777776665555678888887  6888888776532 222222 2455666665     68999864432 2333


Q ss_pred             HHHHhhhhhcc-----------------c---cc--hHHHHHHHHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHh
Q 009978          175 SLATFLTPWAA-----------------D---TS--LLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMG  232 (521)
Q Consensus       175 ~~~~~l~~~~~-----------------~---~~--~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~  232 (521)
                      ++..+..+...                 .   ++  ...+...-++.=+-.+....++..+.-....+++++.+..-...
T Consensus        82 g~~m~~l~~~i~~~~~~~~~~d~~~~~~~~~~~~~~i~~Lt~~F~~L~fl~ATQDIAVDGWALT~Ls~~n~~~ASTcqtv  161 (544)
T PF13000_consen   82 GILMLYLSYNISQWLLFDGVDDALLGQGESTVNNITIKFLTWFFFILVFLCATQDIAVDGWALTMLSPENVGYASTCQTV  161 (544)
T ss_pred             HHHHHHHHhccchhhcccccchhhhcCCCCcccccchhHHHHHHHHHHHHHccCCceeehhhhhhcChhhcchHHHHHHh
Confidence            33222222111                 0   11  11223333333344566667777888788888999988888888


Q ss_pred             hhhhhhHHHHHHHHHhhh-----cc--------C---chhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHH
Q 009978          233 GFTSGNAIGLVLSPILMS-----QA--------G---IFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILR  296 (521)
Q Consensus       233 ~~~~g~~~g~~l~~~l~~-----~~--------g---w~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (521)
                      +.+.|..++..+.-.+-+     .+        |   -..-..+.|.+.++..+...++.+|.|......+.+..+...+
T Consensus       162 G~~~Gyfls~tvFlalns~~f~Nky~r~~p~~~glvtl~~yl~fwg~~~l~~T~~v~~~k~E~~~~~~~~~~~~~~~~~~  241 (544)
T PF13000_consen  162 GQTAGYFLSFTVFLALNSPDFCNKYLRSTPSDEGLVTLSGYLKFWGWVFLIVTILVAFFKKEKPHSESLPKIEPINKSDG  241 (544)
T ss_pred             HhhhhHHHHHHHHHhhCCHHHHHHhcccCCCCCCeeeHHHHHHHHHHHHHHHHHHHheEeecccccccCccccccccccc
Confidence            888888877766544422     11        1   1112233444445555555566666553322111000000000


Q ss_pred             hhcc---ccccCC---CCCCCCC---CchHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhHhH
Q 009978          297 EKQK---PLLMGN---KHKPATV---IPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSA  367 (521)
Q Consensus       297 ~~~~---~~~~~~---~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  367 (521)
                      +.+.   +.+..+   +++....   -+.+.+++|-|.+..+++.....-.++..-..-...-+.| .|++.++.+....
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~i~~~Y~~l~~ilkLp~V~~li~ilL~~KigF~a~da~T~LKLlE-kG~~KE~LAl~~l  320 (544)
T PF13000_consen  242 KSKEISIEYDESDVISTEEILSIKDVYKSLWKILKLPNVQTLIIILLTAKIGFQANDAVTSLKLLE-KGLSKEDLALLVL  320 (544)
T ss_pred             cccccceecccccccchhhhhhHHHHHHHHHHHHcCchHHHHHHHHHHHHhccccchhhhHHHHHH-cCCCHHHhHHHHH
Confidence            0000   000000   0000111   1234456778888888888888888877777777777888 7999998776644


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCcc--------------hhHH--------HHHHHHHHH---HHHH-HHH-Hhcc-
Q 009978          368 VPWSVMAFTGYLGGLLSDMLIQRGTSVT--------------LTRK--------ILQSIGFIA---PGIA-LIG-LTAA-  419 (521)
Q Consensus       368 ~~~~~~~i~~~~~g~l~dr~~~~~~~~~--------------~~~~--------~~~~~~~~~---~~~~-~~~-~~~~-  419 (521)
                      +    .+...++.|+++.|+.+.+....              ..|.        .....++..   .++. ... ..+. 
T Consensus       321 i----~~P~qii~~~~~~Kws~g~~P~~~~~~~l~~~~~~~~~~~~l~g~~g~L~~Wl~af~gRL~~a~l~~~iV~~fP~  396 (544)
T PF13000_consen  321 I----DFPFQIILPYYIGKWSAGSPPLDVDNKALPNFSRANKIIRLLVGDAGALRPWLWAFWGRLVAALLAQLIVYFFPS  396 (544)
T ss_pred             H----hhhHHHHHHHHhhhhhcCCCccccccccccccccccchhhhhhccchhhHHHHHHHHHHHHHHHHHHheEEeCCC
Confidence            4    45555666666666654322110              0000        111111111   1110 000 1111 


Q ss_pred             --chhHHHHHHHHHHHHHHhhhhh----hhHHHHHhh-hccchhhHHhHHHHHHHHHHHHHHHHHHHHhhc
Q 009978          420 --KSPVMASAWLTLAIGMKSFSHS----GFLVNLQEI-APQYSGVLHGISNTAGTFAAILGTVGAGFFVEL  483 (521)
Q Consensus       420 --~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~-~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~  483 (521)
                        ..+...+..+++.-.+..+...    ...+.-+++ .|..-|+.+.+.|++.++|+-.-..+.=++.|.
T Consensus       397 ~g~v~~~Yf~lvI~~~~l~sf~stvmFVai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD~  467 (544)
T PF13000_consen  397 DGPVPTYYFLLVIIQHVLSSFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLWLVDY  467 (544)
T ss_pred             CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhcCCCchHHHHHHHhhh
Confidence              1112222222222222222222    222333333 357889999999999999998777776666663

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=98.70  E-value=2.2e-06  Score=86.31  Aligned_cols=151  Identities=17%  Similarity=0.122  Sum_probs=102.0

Q ss_pred             HHHHHHHHHHhCCCcccchhHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHhccchhHH
Q 009978          345 SWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVM  424 (521)
Q Consensus       345 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  424 (521)
                      ..++.+..+ .|-+ ....++.....++..++.++.|+++|.+|||         .+...+.++..++.+.....++...
T Consensus        65 ~~l~~I~~d-iG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr---------~~~i~g~~l~vvG~Iv~atA~~~~~  133 (599)
T PF06609_consen   65 SILPYINAD-IGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLFGRR---------YFFIIGSLLGVVGSIVCATAQNMNT  133 (599)
T ss_pred             HHHHHHHHh-cCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHhcch---------HHHHHHHHHHHhHHHHhhcCCcHHH
Confidence            444555555 6655 5567777888889999999999999999999         5666677777777777777777766


Q ss_pred             HHHHHHHHHHHHhhhhhhhHHHHHhhhc-cchhhHHhHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHH
Q 009978          425 ASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSAL  503 (521)
Q Consensus       425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~  503 (521)
                      .++...+.....+... .......|..| |.|+...++.....-.....++.+...+.... +|++.|++..+...++++
T Consensus       134 ~iag~~l~GvgaG~~~-~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~-~WRw~~~~~~i~~~i~~v  211 (599)
T PF06609_consen  134 FIAGMVLYGVGAGVQE-LAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHS-GWRWIFYIFIIWSGIALV  211 (599)
T ss_pred             HHHHHHHHHHhhHHHH-HHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCC-CcchHHHHHHHHHHHHHH
Confidence            6666555443333332 33444667777 68877776665554455556677766665544 599999998887777665


Q ss_pred             HHHHh
Q 009978          504 FYIIF  508 (521)
Q Consensus       504 ~~~~~  508 (521)
                      +.+++
T Consensus       212 l~~~f  216 (599)
T PF06609_consen  212 LIFFF  216 (599)
T ss_pred             HHHHH
Confidence            54444

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.68  E-value=1.5e-06  Score=82.01  Aligned_cols=157  Identities=16%  Similarity=0.072  Sum_probs=125.5

Q ss_pred             hhhhhhhhhh-hhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHh-HhcchHHHHHHHHHHHHHHhhhhhc-cccchHHHH
Q 009978          117 VMSVAIVPLS-LAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVD-YYGGKIIMAWGVALWSLATFLTPWA-ADTSLLALL  193 (521)
Q Consensus       117 ~~~~~~~~~~-~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~d-r~Grr~~~~~~~~~~~~~~~l~~~~-~~~~~~~l~  193 (521)
                      +--.++.++- +-||++..|...+.+....|..++-...|++.. |.++++...+++.+.+++..+..++ ...+.+.+.
T Consensus       226 ~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~  305 (403)
T PF03209_consen  226 MQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFR  305 (403)
T ss_pred             hhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHH
Confidence            4445555554 448999999999999999999999999999988 5678888888888877776654333 126788899


Q ss_pred             HHHHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHhhhcc----------CchhHHHHHHH
Q 009978          194 AMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQA----------GIFGPFVIFGL  263 (521)
Q Consensus       194 ~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~----------gw~~~f~~~~~  263 (521)
                      ..-++.|++.|.......+...+...+++.|..+|.+.....++..+|..+++.+.|..          +|-.+|.+-++
T Consensus       306 ~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~  385 (403)
T PF03209_consen  306 PGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAV  385 (403)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999886521          35556666666


Q ss_pred             HHHHHHHHHH
Q 009978          264 SGFLWVLVWL  273 (521)
Q Consensus       264 ~~~i~~i~~~  273 (521)
                      ..++.+++..
T Consensus       386 ll~~a~~ll~  395 (403)
T PF03209_consen  386 LLLAALVLLG  395 (403)
T ss_pred             HHHHHHHHHH
Confidence            5555544443

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=98.58  E-value=2.7e-07  Score=66.51  Aligned_cols=79  Identities=20%  Similarity=0.203  Sum_probs=72.6

Q ss_pred             hhhhhhhhhhhhhhhhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHHHHHHHhhhhhccccchHH
Q 009978          112 NADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLA  191 (521)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~l~~~~~~~~~~~  191 (521)
                      +..+..+.+.+|.+++|.++|.++.|++.+...+|+.+|.+...++.++..+++.+..+.+...+..+.+++.  ++++.
T Consensus         5 GigRFayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~--~~~~~   82 (85)
T PF06779_consen    5 GIGRFAYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALT--HSFWL   82 (85)
T ss_pred             hhHHHHHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH--hchHH
Confidence            5677889999999999999999999999999999999999999999999888999999999999999999988  66654


Q ss_pred             H
Q 009978          192 L  192 (521)
Q Consensus       192 l  192 (521)
                      +
T Consensus        83 w   83 (85)
T PF06779_consen   83 W   83 (85)
T ss_pred             H
Confidence            4

Note that many members are hypothetical proteins.

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=98.57  E-value=5.8e-06  Score=68.31  Aligned_cols=108  Identities=14%  Similarity=0.164  Sum_probs=92.4

Q ss_pred             HHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhhhcchhhHHHHHHHhc
Q 009978          138 IVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARW  217 (521)
Q Consensus       138 ~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~  217 (521)
                      .-.++......+++++.+.+.+++|.|+.++++.+.+.+-.... +.  ++.+.++.+-++.|++.+..+.+...++.+.
T Consensus        41 ~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~-~~--~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~  117 (156)
T PF05978_consen   41 YSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF-FY--PNSYTLYPASALLGFGAALLWTAQGTYLTSY  117 (156)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH-Hh--hhHHHHHHHHHHHhhhhHHhhHhhhHHHHHc
Confidence            34456666677888888999999999999999999988765554 34  7788999999999999999999999999999


Q ss_pred             CCchhhHHHHHHHHhhhhhhhHHHHHHHHHh
Q 009978          218 FPQTERARAVAIAMGGFTSGNAIGLVLSPIL  248 (521)
Q Consensus       218 ~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l  248 (521)
                      .+++++++..++.......+.++|.++.-.+
T Consensus       118 s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~  148 (156)
T PF05978_consen  118 STEETIGRNTGIFWAIFQSSLIFGNLFLFFI  148 (156)
T ss_pred             CCHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999888888888776554

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=98.55  E-value=8.8e-05  Score=75.29  Aligned_cols=158  Identities=18%  Similarity=0.153  Sum_probs=124.7

Q ss_pred             hhhhhhhhhhhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHh-cchHHHHHHHHHHHHHHhhhhhcc----------
Q 009978          117 VMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYY-GGKIIMAWGVALWSLATFLTPWAA----------  185 (521)
Q Consensus       117 ~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~-Grr~~~~~~~~~~~~~~~l~~~~~----------  185 (521)
                      .....+..+.++++.+...+.-..+.+.-.....++.++.++|-| ||-+++.++.++..++..+..+..          
T Consensus        56 ~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~  135 (571)
T KOG1237|consen   56 LVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMC  135 (571)
T ss_pred             chhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccc
Confidence            346677788888998888888888899888999999999999987 899999999988888865433220          


Q ss_pred             ----------ccc---hHHHHHHHHHHhhhhcchhhHHHHHHHhcCC---ch-hh--HHHHHHHHhhhhhhhHHHHHHHH
Q 009978          186 ----------DTS---LLALLAMRAVVGLAEGVALPAMNNMVARWFP---QT-ER--ARAVAIAMGGFTSGNAIGLVLSP  246 (521)
Q Consensus       186 ----------~~~---~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~---~~-~r--~~~~~~~~~~~~~g~~~g~~l~~  246 (521)
                                .++   ...++.+.-+..+|.|+.-+...++-+|-++   ++ ++  ...+.++....++|..++..+..
T Consensus       136 ~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~v  215 (571)
T KOG1237|consen  136 KFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLV  215 (571)
T ss_pred             cCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHH
Confidence                      001   2356677778888999999999999999998   22 22  36788889999999999998888


Q ss_pred             HhhhccCchhHHHHHHHHHHHHHHHHHH
Q 009978          247 ILMSQAGIFGPFVIFGLSGFLWVLVWLS  274 (521)
Q Consensus       247 ~l~~~~gw~~~f~~~~~~~~i~~i~~~~  274 (521)
                      +.-+..+|...|.+..+..++++++++.
T Consensus       216 yiq~~~~w~lgf~i~~~~~~lai~iF~~  243 (571)
T KOG1237|consen  216 YIQDNVGWKLGFGIPTVLNALAILIFLP  243 (571)
T ss_pred             hhhhcccceeeccHHHHHHHHHHHHHHc
Confidence            8878899999999988877766655443

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=98.52  E-value=1.2e-09  Score=109.96  Aligned_cols=163  Identities=16%  Similarity=0.156  Sum_probs=109.8

Q ss_pred             hhhhhhhhhhhhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHHHHHHHhhhh--h-cccc-----
Q 009978          116 VVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTP--W-AADT-----  187 (521)
Q Consensus       116 ~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~l~~--~-~~~~-----  187 (521)
                      .......+.+.++.+.+..  -.......+...++.++...+.||+|||++++.+.++.+++.+.++  . ...+     
T Consensus       270 ~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (451)
T PF00083_consen  270 NFIFYYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWW  347 (451)
T ss_pred             ccccccccccccccccccc--ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            3444556777777777776  1122233344556677777999999999999999988887776664  1 1111     


Q ss_pred             chHHHHHHHHHHhhhhc-chhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHhhhccCchhHHHHHHHHHH
Q 009978          188 SLLALLAMRAVVGLAEG-VALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGF  266 (521)
Q Consensus       188 ~~~~l~~~r~l~G~g~~-~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gw~~~f~~~~~~~~  266 (521)
                      +...+.... +..++.+ +..+....+..|.+|.+.|+++.++......++..+++.+...+.+..+-...+++.+.+++
T Consensus       348 ~~~~i~~~~-l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~  426 (451)
T PF00083_consen  348 SILSIVFLA-LFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCL  426 (451)
T ss_pred             ccccceeee-eccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhHHHHH
Confidence            122222222 2212222 33566678889999999999999999999999999999888888776663456666666666


Q ss_pred             HHHHHHHHhcCCCCC
Q 009978          267 LWVLVWLSATSSTPD  281 (521)
Q Consensus       267 i~~i~~~~~~~~~~~  281 (521)
                      +..+..+++.||+..
T Consensus       427 i~~i~~~~~lpET~g  441 (451)
T PF00083_consen  427 IAIIFVYFFLPETKG  441 (451)
T ss_pred             HHHhheeEEEeeCCC
Confidence            666667777777654

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=98.52  E-value=1.4e-07  Score=89.24  Aligned_cols=182  Identities=15%  Similarity=0.046  Sum_probs=130.1

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcCCcchhhH--------HHHHH-HHHHHHhhhhhHHHHhHhcchHHHH
Q 009978           98 VKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGI--------VQSSF-LWGYLVSPIAGGTLVDYYGGKIIMA  168 (521)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~--------~~s~~-~~~~~i~~~~~G~l~dr~Grr~~~~  168 (521)
                      -+.+...+..+|+.-...+..+.....+.+..++.+.+...        ...+. ..++..+-.+...++|+.|||+..+
T Consensus       303 g~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~  382 (538)
T KOG0252|consen  303 GKHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQL  382 (538)
T ss_pred             HHHHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHH
Confidence            36667777778877777777777888888887776554433        12222 2223336666788999999999999


Q ss_pred             HHHHHHHHHHhhhhhccc--cchHHHHHHHHHHhhhh-cchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHH
Q 009978          169 WGVALWSLATFLTPWAAD--TSLLALLAMRAVVGLAE-GVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLS  245 (521)
Q Consensus       169 ~~~~~~~~~~~l~~~~~~--~~~~~l~~~r~l~G~g~-~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~  245 (521)
                      .+.+++.+..+..+...+  .+-..+++...+..+.. -+-......+-+|.+|.+-|+...|+..+..-.|.++|....
T Consensus       383 ~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F  462 (538)
T KOG0252|consen  383 MGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGF  462 (538)
T ss_pred             hhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHh
Confidence            999999999888877632  11222233333332221 122344556778999999999999999999999999999999


Q ss_pred             HHhhh-----ccCchhHHHHHHHHHHHHHHHHHHhcCCCC
Q 009978          246 PILMS-----QAGIFGPFVIFGLSGFLWVLVWLSATSSTP  280 (521)
Q Consensus       246 ~~l~~-----~~gw~~~f~~~~~~~~i~~i~~~~~~~~~~  280 (521)
                      .++.+     ..+.++++++.+.+.++..+..+++ ||+.
T Consensus       463 ~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~-pEtk  501 (538)
T KOG0252|consen  463 LYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLI-PETK  501 (538)
T ss_pred             hHhhhccCCccccchHHHHHHHHHHHHhHheeEEe-eccc
Confidence            99988     7789999999999888776665554 4543

>PF12832 MFS_1_like: MFS_1 like family

Probab=98.44  E-value=1.4e-06  Score=62.55  Aligned_cols=71  Identities=18%  Similarity=0.108  Sum_probs=60.8

Q ss_pred             HHHHHHHHhhhhhhhhhhhhhhhhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHHH
Q 009978          104 LALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALW  174 (521)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~  174 (521)
                      +...+++.+.......|.+|...++.|+|+.++|.+.++..+...++++++|.++||+++++.++....++
T Consensus         5 lk~~yf~~f~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~   75 (77)
T PF12832_consen    5 LKAFYFFYFAALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM   75 (77)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence            34456666666778888889899999999999999999999999999999999999999998877765543

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.42  E-value=1.5e-06  Score=86.24  Aligned_cols=165  Identities=13%  Similarity=0.086  Sum_probs=110.3

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhhhhhhhhhh-hcCCcchhhHHHHHHHHHHHHhhhhhHHHHhH----hcchHHHHHHHH
Q 009978           98 VKVVSMLALALALCNADRVVMSVAIVPLSLA-HGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDY----YGGKIIMAWGVA  172 (521)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr----~Grr~~~~~~~~  172 (521)
                      -..++..++..++.....+.+...+|.+.++ .|.|..+.+.+...+.++.+++.+++|+++||    ..+|........
T Consensus       272 dp~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~  351 (495)
T KOG2533|consen  272 DPGVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLC  351 (495)
T ss_pred             chhHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            3455666777777888888888899998888 56999999999999999999999999999999    667776666666


Q ss_pred             HHHHHH-hhhhhccccchHHHHHHHHHHhhhhcchhhHHHHHHHhcCCchhh-HHHHHHHHhhhhhhhHH-HHHHHHHhh
Q 009978          173 LWSLAT-FLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTER-ARAVAIAMGGFTSGNAI-GLVLSPILM  249 (521)
Q Consensus       173 ~~~~~~-~l~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r-~~~~~~~~~~~~~g~~~-g~~l~~~l~  249 (521)
                      ++.+.. +.....  .+.......-+....+.....+.......+...++.| -...+....+.+.+..+ ++...+...
T Consensus       352 ~~~~~g~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~~~~~~~a  429 (495)
T KOG2533|consen  352 LYAIIGAISLLAA--AVLPGAYGAFLIGPYGLIATAIIALSWTSANLAGNTKALTTVSAIIDGTGSAGAISGQLFRSLDA  429 (495)
T ss_pred             HHHHHHHHHHHhh--ccchHHhHHHHhcchhhHHHHHHHHhhccccccchHHhHHHHhhhhcchhHHHHhhhhhcccccC
Confidence            555444 433333  3344444433444455556677778888887765543 33344444444444444 444444455


Q ss_pred             hccCchhHHHHHHHH
Q 009978          250 SQAGIFGPFVIFGLS  264 (521)
Q Consensus       250 ~~~gw~~~f~~~~~~  264 (521)
                      ..++|...|......
T Consensus       430 p~y~~~~~f~~~~~~  444 (495)
T KOG2533|consen  430 PRYGWGAVFYMLVAA  444 (495)
T ss_pred             cchhhhhHHHHHHHH
Confidence            567888888544433

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=98.35  E-value=1.9e-05  Score=80.56  Aligned_cols=180  Identities=16%  Similarity=0.089  Sum_probs=115.3

Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHHHHHHHh
Q 009978          100 VVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATF  179 (521)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~  179 (521)
                      ....+.+..+......+......+.+.+..|.+... .+...+..+...++..+...+.||+|||+.++.+...+.++.+
T Consensus       296 ~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~  374 (513)
T KOG0254|consen  296 LIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLV  374 (513)
T ss_pred             HHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHH
Confidence            344444555555555566677788888888877554 4444455666677777779999999999999999999999988


Q ss_pred             hhhhcccc-----------chHHHHHHHHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHh
Q 009978          180 LTPWAADT-----------SLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPIL  248 (521)
Q Consensus       180 l~~~~~~~-----------~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l  248 (521)
                      +++.....           ....+....+.......+..+....+.+|.+|.+-|+++.++......+...+-......+
T Consensus       375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~  454 (513)
T KOG0254|consen  375 ILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFI  454 (513)
T ss_pred             HHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            76654100           1112222222222222334556667899999999999999987776665555444444444


Q ss_pred             hhccCchhHHHHHHHHHHHHHH-HHHHhcCCCC
Q 009978          249 MSQAGIFGPFVIFGLSGFLWVL-VWLSATSSTP  280 (521)
Q Consensus       249 ~~~~gw~~~f~~~~~~~~i~~i-~~~~~~~~~~  280 (521)
                      .+..++...|...+..+.+..+ ..++..||..
T Consensus       455 ~~~~~~~~~f~~f~~~~~~~~~~fv~~~~pETk  487 (513)
T KOG0254|consen  455 TEALGIGGTFGYFGGICLLSLIIFVFFFVPETK  487 (513)
T ss_pred             HHhccccchHHHHHHHHHHHHHHHheEEcccCC
Confidence            4443445667776666666555 4555666654

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=98.33  E-value=2.8e-05  Score=69.81  Aligned_cols=158  Identities=17%  Similarity=0.105  Sum_probs=95.1

Q ss_pred             HHHHHHHHHHHHHHHHhCCCcccchhHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHH--H
Q 009978          339 GFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIG--L  416 (521)
Q Consensus       339 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~  416 (521)
                      ..+.+..|.|.. ++.+|+|.++...+.....++..+| ++.|.+.|+++.+         ..+.++......+...  +
T Consensus        17 t~Y~Fs~yS~~L-k~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~---------~~l~iG~~~~~~GY~~~~l   85 (250)
T PF06813_consen   17 TTYTFSAYSPQL-KSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPW---------VVLLIGAVLGFVGYGLLWL   85 (250)
T ss_pred             cccchhhhhHHH-HHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchH---------HHHHHHHHHHHHHHHHHHH
Confidence            445566666655 4559999999999988888888765 8899999999988         3444444433333332  2


Q ss_pred             hccc-----hhHHHHHHHHHHHHHHhhhhhhhHHHHHhhhccchhhHHhHHHHHHHHHHHHHHHHHHHHhhcccchHHHH
Q 009978          417 TAAK-----SPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFL  491 (521)
Q Consensus       417 ~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~  491 (521)
                      ....     +.|......+++................+-+|++||++.|+.-....+++.+-..+...+.+.  +....+
T Consensus        86 ~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~~RG~vvgilk~~~GLSaai~t~i~~~~f~~--~~~~fl  163 (250)
T PF06813_consen   86 AVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPRSRGTVVGILKGFFGLSAAIFTQIYSAFFGD--DPSSFL  163 (250)
T ss_pred             HHhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCccccCceehhhhHHHHhHHHHHHHHHHHHcCC--ChHHHH
Confidence            2221     122222222222222222223333334466789999999999999999999988888777765  233444


Q ss_pred             HHHHHH-HHHHHHHHHHhc
Q 009978          492 LLTSLL-YFLSALFYIIFS  509 (521)
Q Consensus       492 ~~~~~~-~~~~~~~~~~~~  509 (521)
                      .+.+.. .+++.+...+.+
T Consensus       164 l~la~~~~~v~l~~~~~vr  182 (250)
T PF06813_consen  164 LFLAVLPAVVCLVAMFFVR  182 (250)
T ss_pred             HHHHHHHHHHHHHHhhhee
Confidence            444433 333333334443

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=98.28  E-value=0.00036  Score=65.15  Aligned_cols=148  Identities=14%  Similarity=0.053  Sum_probs=88.9

Q ss_pred             HHHHHhCCCcccchhHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHhccchhHHHHHHH
Q 009978          350 YFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWL  429 (521)
Q Consensus       350 ~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  429 (521)
                      ..++ +|++..+++.++......+.+...+.|.+.||+|||         .......++.++..+. -..++...+++.=
T Consensus        60 LY~~-yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk---------~~cl~~cily~~scl~-k~~~~~~~L~~GR  128 (354)
T PF05631_consen   60 LYES-YGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRK---------KACLLFCILYSLSCLT-KHSSNYPVLLLGR  128 (354)
T ss_pred             HHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch---------HHHHHHHHHHHHHHHH-HhccccHHHHHHH
Confidence            3344 899999999999999999999999999999999998         2333333333333332 2334455444444


Q ss_pred             HHHHHHHhhhhhhhHHH-HHhhhc-----cchhhHHhHHH-HHHHHHHHHHHHHHHHHhhcccc-hHHHHHHHHHHHHHH
Q 009978          430 TLAIGMKSFSHSGFLVN-LQEIAP-----QYSGVLHGISN-TAGTFAAILGTVGAGFFVELVGS-FQGFLLLTSLLYFLS  501 (521)
Q Consensus       430 ~~~~~~~~~~~~~~~~~-~~~~~~-----~~~g~~~g~~~-~~~~~g~~~~~~~~g~l~~~~g~-~~~~~~~~~~~~~~~  501 (521)
                      ++++..........-++ +.|...     +..+..++... ..+.+-.+.+..+.-.+.+..|. ...+|.....+.+++
T Consensus       129 vlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~  208 (354)
T PF05631_consen  129 VLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVA  208 (354)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHH
Confidence            44444444444444322 333322     33455555444 23334455556666666776652 477888888777777


Q ss_pred             HHHHHHh
Q 009978          502 ALFYIIF  508 (521)
Q Consensus       502 ~~~~~~~  508 (521)
                      .++....
T Consensus       209 ~~~I~~~  215 (354)
T PF05631_consen  209 AVLILKT  215 (354)
T ss_pred             HHHHHhc
Confidence            6665543

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=98.26  E-value=1e-05  Score=78.96  Aligned_cols=111  Identities=21%  Similarity=0.240  Sum_probs=90.7

Q ss_pred             HHHHHHHHHHHHHHhhhhhccc-cc------hHHHHHHHHHHhhhhcchhhHHHHHHHhcCCch---hhHHHHHHHHhhh
Q 009978          165 IIMAWGVALWSLATFLTPWAAD-TS------LLALLAMRAVVGLAEGVALPAMNNMVARWFPQT---ERARAVAIAMGGF  234 (521)
Q Consensus       165 ~~~~~~~~~~~~~~~l~~~~~~-~~------~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~---~r~~~~~~~~~~~  234 (521)
                      |+++++.+++.+|.+++.++.. .+      .+.++++.++.++|.|+.-|...++.+|.++++   +|.+.+.++..+.
T Consensus         2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i   81 (372)
T PF00854_consen    2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI   81 (372)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence            5778888899999887444311 22      357889999999999999999999999999765   5778899999999


Q ss_pred             hhhhHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHh
Q 009978          235 TSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSA  275 (521)
Q Consensus       235 ~~g~~~g~~l~~~l~~~~gw~~~f~~~~~~~~i~~i~~~~~  275 (521)
                      ++|..++..+.+++-+++||.+.|.+.++..++..+..+..
T Consensus        82 n~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~  122 (372)
T PF00854_consen   82 NIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSG  122 (372)
T ss_dssp             HHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCC
T ss_pred             hhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhC
Confidence            99999999999999999999999999998888776655543

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=98.23  E-value=1.4e-05  Score=81.91  Aligned_cols=141  Identities=13%  Similarity=0.011  Sum_probs=109.7

Q ss_pred             hCCCcccchhHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHH
Q 009978          355 YHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIG  434 (521)
Q Consensus       355 ~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  434 (521)
                      .+.+.....+..+++.++..+|.++.|.++||+|||         .+...+.++..++-+.....++.+...+.=++.+.
T Consensus       113 ~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk---------~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~  183 (521)
T KOG0255|consen  113 VCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRK---------PVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGF  183 (521)
T ss_pred             eeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccH---------HHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHh
Confidence            456667778888899999999999999999999999         45566666666666677777777777766666665


Q ss_pred             HHhhhhhhhHHHHHhhh-ccchhhHHhHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHh
Q 009978          435 MKSFSHSGFLVNLQEIA-PQYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYIIF  508 (521)
Q Consensus       435 ~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  508 (521)
                      +.+........+..|.. |++|+.+..+ ......++.+++...+++..   +|+..+++..+..++.++++++.
T Consensus       184 ~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~---~Wr~~~~~~~~~~~~~~~~~~l~  254 (521)
T KOG0255|consen  184 FGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR---DWRWLFWIISIPSGLFLLLWFLP  254 (521)
T ss_pred             hccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHHcc
Confidence            55555566666666665 5799999999 88889999999999999988   48999988888877776664444

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=98.07  E-value=0.00014  Score=72.01  Aligned_cols=125  Identities=20%  Similarity=0.224  Sum_probs=110.7

Q ss_pred             hhhhhhhcCCcchhhHHHHHHHHHHHHhhhhhH-HHHhHhcchHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhh
Q 009978          123 VPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGG-TLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGL  201 (521)
Q Consensus       123 ~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G-~l~dr~Grr~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~r~l~G~  201 (521)
                      -.+...+++++.+.+...+.......+++++.. .+...+|-|+++.+|++...+...+.+++  ++.|+++....+.++
T Consensus       266 ~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~--~~~w~~~~~~v~~~~  343 (463)
T KOG2816|consen  266 LYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFA--TETWMMFAAGVVVAL  343 (463)
T ss_pred             EEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHh--ccchhhhHHHHHHHh
Confidence            345567899999999998888888888888887 77777899999999999999999999999  999999999888877


Q ss_pred             hhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHhhh
Q 009978          202 AEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMS  250 (521)
Q Consensus       202 g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~  250 (521)
                      . +...++..+.++.+.+++++|+++++.+....+..+++|.+-+.+..
T Consensus       344 ~-~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~  391 (463)
T KOG2816|consen  344 A-GIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFA  391 (463)
T ss_pred             h-cchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHH
Confidence            6 66789999999999999999999999999999999999998877754

>PF12832 MFS_1_like: MFS_1 like family

Probab=98.00  E-value=4.6e-05  Score=54.67  Aligned_cols=62  Identities=16%  Similarity=0.178  Sum_probs=56.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhHhHHHHHHHHHHHHHHHHHHHHHHhc
Q 009978          328 SIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQR  390 (521)
Q Consensus       328 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~  390 (521)
                      .+-..+++.+.+...+..++|.|+++ .|+++.++|.+.++..+...++.+++|+++||.+++
T Consensus         4 ~lk~~yf~~f~~~g~~~Pfl~~~~~~-~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~   65 (77)
T PF12832_consen    4 PLKAFYFFYFAALGCLYPFLPLYLKQ-LGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKR   65 (77)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHhhhh-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcc
Confidence            34566777888888999999999998 799999999999999999999999999999999988

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=97.90  E-value=0.00057  Score=70.85  Aligned_cols=163  Identities=11%  Similarity=0.031  Sum_probs=102.4

Q ss_pred             HHHHHHHHHHHHHHHhCCCcccchhHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHhcc
Q 009978          340 FFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAA  419 (521)
Q Consensus       340 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (521)
                      ++++...+..|+.+.+|++...+..+...+....-+..+++|++.|++-.+       .+. +.++.++..++..++...
T Consensus         3 yYGm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~-------~~t-Il~~~ii~~lG~~llai~   74 (654)
T TIGR00926         3 YYGMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGK-------FKT-ILYLSIVYVVGHALLSFG   74 (654)
T ss_pred             eeecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------HHH-HHHHHHHHHHHHHHHHhc
Confidence            455666777888887899988888877777777777889999999986444       112 222222222232222221


Q ss_pred             --ch------hHHHHHHHHHHHHHHhhhhhhhHHHHHhhhc----cchhhHHhHHHHHHHHHHHHHHHHHHHHhhccc--
Q 009978          420 --KS------PVMASAWLTLAIGMKSFSHSGFLVNLQEIAP----QYSGVLHGISNTAGTFAAILGTVGAGFFVELVG--  485 (521)
Q Consensus       420 --~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g--  485 (521)
                        +.      ....+..+.+..+..+..-+...+...+..+    +.+-..+.++....++|+.+++.+.+++.+..+  
T Consensus        75 a~~~~~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~f  154 (654)
T TIGR00926        75 AIPSSGHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCF  154 (654)
T ss_pred             cCcccccchHHHHHHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence              10      1112222333333333334445555554443    246778899999999999999999999875431  


Q ss_pred             ----chHHHHHHHHHHHHHHHHHHHHhcc
Q 009978          486 ----SFQGFLLLTSLLYFLSALFYIIFST  510 (521)
Q Consensus       486 ----~~~~~~~~~~~~~~~~~~~~~~~~~  510 (521)
                          +|...|.+.+++++++.+++...++
T Consensus       155 g~~~~~~~aF~i~~i~m~ia~lvf~~g~k  183 (654)
T TIGR00926       155 GCQDCYPLAFGVPAILMILALIVFMAGSK  183 (654)
T ss_pred             ccCcchHHHHHHHHHHHHHHHHHHHHhcc
Confidence                3788888888888888777665443

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=97.90  E-value=0.0005  Score=60.90  Aligned_cols=101  Identities=16%  Similarity=0.192  Sum_probs=57.9

Q ss_pred             hhhHHHHHHHHhhhhhhhHHHHHHHHHh---h--hccCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHHH
Q 009978          221 TERARAVAIAMGGFTSGNAIGLVLSPIL---M--SQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYIL  295 (521)
Q Consensus       221 ~~r~~~~~~~~~~~~~g~~~g~~l~~~l---~--~~~gw~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~  295 (521)
                      ++|+....+...+.++|.++....--.-   .  -.-.|++.+.+.+++.++.+++..++-.+-....+. +++      
T Consensus         2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~ifGk~fd~~~~~-~k~------   74 (267)
T PF07672_consen    2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIFGKNFDIYSPK-EKQ------   74 (267)
T ss_pred             CccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcc-ccc------
Confidence            4556666666677777776654432111   1  122599999999988877776666653332111111 000      


Q ss_pred             HhhccccccCCCCCCCCCCchHHHHHhcchHHHHHHHHHHHH
Q 009978          296 REKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHS  337 (521)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  337 (521)
                               ++.+.........++.+|++..|...+.+...-
T Consensus        75 ---------~k~~~~~~~~~s~~~~LK~K~tw~w~~~Yg~wL  107 (267)
T PF07672_consen   75 ---------EKENSTLSKKPSYKSILKEKETWKWILIYGIWL  107 (267)
T ss_pred             ---------ccccccccccchHHHHHccchHHHHHHHHHHHh
Confidence                     111112233467889999999998877766543

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=97.87  E-value=0.0017  Score=61.92  Aligned_cols=120  Identities=11%  Similarity=0.018  Sum_probs=59.3

Q ss_pred             HHHHHHHHHHHhhhhhhhhhhhhhhhhhhcCCcchhhHHHHHHHHHHHH----hhhhhHHHHhHhcchHHHHHHHH-HHH
Q 009978          101 VSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLV----SPIAGGTLVDYYGGKIIMAWGVA-LWS  175 (521)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i----~~~~~G~l~dr~Grr~~~~~~~~-~~~  175 (521)
                      ..+.++..+-....++++....+++.+++-.+.. .-.....+.+...+    ....-..+.-|..+|-...+... +..
T Consensus        20 ~~i~~llGiG~LlpWN~fiTa~~y~~~~~~~~~~-~~~F~~~~~~~a~i~~ll~~~~n~~~~~~~~~~~~~~l~~~~il~   98 (406)
T KOG1479|consen   20 YLIFLLLGIGTLLPWNMFITASDYYYYRFPGYHN-SKNFTSSYTLAAQIPLLLFNLLNAFLNTRLRTRVGYLLSLIAILF   98 (406)
T ss_pred             HHHHHHHhcccccchHhhhccHHHHHhhcCCCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444556677888888888877644333 22333333333333    33333444444222211111111 111


Q ss_pred             HHHhhhhhc-----cccchHHHHHHHHHHhhhhcchhhHHHHHHHhcCCchh
Q 009978          176 LATFLTPWA-----ADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTE  222 (521)
Q Consensus       176 ~~~~l~~~~-----~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~  222 (521)
                      +..+.....     ....++..++.-.+.+++.|..........++. |++.
T Consensus        99 i~~l~~~~v~~~~~~~~ff~vt~~~vv~~~~a~a~~qgs~~G~a~~~-P~~y  149 (406)
T KOG1479|consen   99 IVTLDLALVKTDTWTNGFFLVTLIIVVLLNLANAVVQGSLYGLAGLF-PSEY  149 (406)
T ss_pred             HHHHHHHhhccCCccchhHHHHHHHHHHHhhhhhhhccchhhhhhcC-CHHH
Confidence            111112221     113456667777888888888887777766654 5443

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=97.73  E-value=0.014  Score=57.74  Aligned_cols=53  Identities=11%  Similarity=0.159  Sum_probs=36.2

Q ss_pred             chHHHHHHHHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHH
Q 009978          188 SLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLS  245 (521)
Q Consensus       188 ~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~  245 (521)
                      .++..++.-++.|++.+.......++.+ .+|++    .++.+..+.+++++++.++-
T Consensus       105 ~f~~~~~~v~~~g~~~~~~q~s~~gla~-~fp~~----~~~a~~~G~g~aGv~~s~~~  157 (437)
T TIGR00939       105 FFVTTMASVVIINSGMALLQGSLFGLAG-VFPST----YSSAVMSGQGLAGVLTSLAM  157 (437)
T ss_pred             HHHHHHHHHHHHHhhhhhhcccchhhcc-cCCHH----HHHHHHhcchhHHHHHHHHH
Confidence            4666777788899998888888888776 55543    45555666666666655543

>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]

Probab=97.69  E-value=0.00037  Score=62.75  Aligned_cols=139  Identities=17%  Similarity=0.167  Sum_probs=92.9

Q ss_pred             hhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhhhcchhhHHHHHHH
Q 009978          136 SGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVA  215 (521)
Q Consensus       136 ~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~  215 (521)
                      .|.+.-+-.+...+..+.+..+.||+..-.=..+..++.+.+.++.+++  ++.++-+.+-.+..++.|.......++-+
T Consensus        64 tg~VLLaDilPsL~iKl~~Pff~~rfpf~~Ri~~~v~~sa~s~~lVafs--~s~~~sL~GV~~aSissGlGEiTFL~lss  141 (409)
T KOG3880|consen   64 TGAVLLADILPSLAIKLTAPFFIHRFPFGFRIALVVLLSALSFFLVAFS--NSVPMSLLGVVFASISSGLGEITFLALSS  141 (409)
T ss_pred             cchhhhhhhhHHHHHHHhchhhhhhcccchHHHHHHHHHhcceEEEEec--cchhHHHhhhhhhhhcCCcceeehhhhhc
Confidence            3555556667777777888889998754333445556777788888888  88999888888888888876655555443


Q ss_pred             hcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHhhh--ccCchhHHHHHHHHHHHHHHHHHHhcCCCCC
Q 009978          216 RWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMS--QAGIFGPFVIFGLSGFLWVLVWLSATSSTPD  281 (521)
Q Consensus       216 ~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~--~~gw~~~f~~~~~~~~i~~i~~~~~~~~~~~  281 (521)
                      . +++    ...+.++.+.+.++++|..--..+.+  .+..|...++...+-++.++..++..++++.
T Consensus       142 ~-Y~~----~~i~~WSSGTGgAGliGa~SYa~lT~~~~~spk~Tlli~l~lP~lfa~~yf~lL~~pes  204 (409)
T KOG3880|consen  142 R-YPS----IVIAGWSSGTGGAGLIGASSYAFLTSWANLSPKSTLLIMLFLPALFAFAYFFLLKSPES  204 (409)
T ss_pred             c-CCC----ceeccccCCCCcchhhhhhHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHheeCCCcc
Confidence            3 322    34555666666667777665555554  3457778888777766666666666555443

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=97.67  E-value=0.0013  Score=63.28  Aligned_cols=138  Identities=11%  Similarity=-0.015  Sum_probs=89.9

Q ss_pred             HHHHHHHHhhhhhhhhhhhhhhhhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHH--HHHH---H
Q 009978          104 LALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVAL--WSLA---T  178 (521)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~--~~~~---~  178 (521)
                      +.+.++..+.....+.+.+.. -.++.-...+..+...+|.+|..++.--...+  |+  |++.+.+.+-  ..+.   .
T Consensus       252 L~lVY~aEY~InqGv~~tl~f-p~~~~~~r~~Y~~Y~~~YQ~GVFISRSS~~~~--ri--r~lwils~LQ~~nl~~~~l~  326 (402)
T PF02487_consen  252 LFLVYFAEYFINQGVAPTLLF-PNSFFSPRDQYRWYQLLYQLGVFISRSSLPFF--RI--RRLWILSLLQVINLVFLLLQ  326 (402)
T ss_pred             HHHHHHHHHHHHhchHHHhcC-CccCCCHHHHHHHHHHHHHHHHhhhhcceeee--eh--hhHHHHHHHHHHHHHHHHHH
Confidence            344555555433333322211 12233345677788888888777664432221  22  4433333222  2221   2


Q ss_pred             hhhhhccccchHHHHHHHHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHh
Q 009978          179 FLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPIL  248 (521)
Q Consensus       179 ~l~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l  248 (521)
                      ...-+.  ++.|.+++.-+..|+..|..++.....+.+-.++++|..++|..+.+.++|..++.+++-.+
T Consensus       327 s~~~fi--psi~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~l  394 (402)
T PF02487_consen  327 SWYRFI--PSIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPL  394 (402)
T ss_pred             HHHHHh--hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            223334  78888889999999999999999999999999999999999999999999999998887665

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>PRK03612 spermidine synthase; Provisional

Probab=97.63  E-value=0.0078  Score=61.04  Aligned_cols=173  Identities=15%  Similarity=0.050  Sum_probs=88.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHH
Q 009978          330 IVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAP  409 (521)
Q Consensus       330 ~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~  409 (521)
                      .+..++..++...+.......+...+|-+....+.+.+++..+..+|+.+++++.++..++-     . ..-+.++++..
T Consensus        20 ~~~~f~sg~~~L~yEv~~~r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~-----~-~~e~~i~l~~~   93 (521)
T PRK03612         20 LAAVFVCAACGLVYELLLGTLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGF-----V-AVELLLALLGG   93 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH-----H-HHHHHHHHHHH
Confidence            34444455555566666666677668888888888888888888888888887764333220     0 00111111111


Q ss_pred             HHHHHH---HhccchhHH-HHHHHHHHHHHHhhhhhhhHHHHHhhhccchhhHHhHHHHHHHHHHHHHHHHHHHHhh-cc
Q 009978          410 GIALIG---LTAAKSPVM-ASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVE-LV  484 (521)
Q Consensus       410 ~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~-~~  484 (521)
                      ....+.   ......... .....++...+.+...|...-+..+...+..|...|-.+....+|+++|+++.+++.- ..
T Consensus        94 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~G~~~Pl~~~~~~~~~~~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~l  173 (521)
T PRK03612         94 LSALILYAAFAFQGLSRLLLYVLVLLIGLLIGMEIPLLMRILQRIRDQHLGHNVATVLAADYLGALVGGLAFPFLLLPRL  173 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhc
Confidence            111111   111001111 1111111122223333333333332222346777888999999999999999888764 67


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHh
Q 009978          485 GSFQGFLLLTSLLYFLSALFYIIF  508 (521)
Q Consensus       485 g~~~~~~~~~~~~~~~~~~~~~~~  508 (521)
                      |.....+++..+..++++++.+..
T Consensus       174 G~~~t~~~~a~l~~~~a~~~~~~~  197 (521)
T PRK03612        174 GLIRTAALTGSLNLLAALVFLWLF  197 (521)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHH
Confidence            733444444333333343333333

>KOG3097 consensus Predicted membrane protein [Function unknown]

Probab=97.62  E-value=0.028  Score=51.65  Aligned_cols=71  Identities=17%  Similarity=0.169  Sum_probs=54.0

Q ss_pred             HHHHHhhhhhHHHHhHhcchHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhhhcchhhHHHHHHHhcC
Q 009978          145 WGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWF  218 (521)
Q Consensus       145 ~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~  218 (521)
                      +.....+++.+.++.++|-|+++.++...+......-. -  +.+..++-.....|+|.+..+..-.+++++.-
T Consensus        69 ~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~lyiA~Nl-~--pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g  139 (390)
T KOG3097|consen   69 LSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALYIAANL-E--PRYETLVPAGLVLGMAAGPIWASKGTYLTPMG  139 (390)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhc-c--hhHHhhccHHHhhccccccccccCcceecHHH
Confidence            44455566666899999999999998888766544332 2  67888999999999999988877766666654

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=97.59  E-value=0.0013  Score=65.37  Aligned_cols=159  Identities=21%  Similarity=0.220  Sum_probs=94.5

Q ss_pred             HHHHHHHHHhCCCcccchhHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHhccc----h
Q 009978          346 WMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAK----S  421 (521)
Q Consensus       346 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~  421 (521)
                      -...++++.+|+++.+...+.....+...+ .++.|.++|-+.-.+.+    |+..+.++.++..+..+.+...+    +
T Consensus        11 ~~~~~l~~~l~ls~~~~~~~~~~~~lPw~~-Kp~~g~lsD~~pi~G~r----r~~Y~~i~~~~~~~~~~~~~~~~~~~~s   85 (433)
T PF03092_consen   11 AIYPFLKDDLGLSPAQLQRLSSLASLPWSI-KPLYGLLSDSFPIFGYR----RKPYMIIGWLLGAVSALVLALLPASESS   85 (433)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHhCchHH-hhhHHhhcccccccCCc----chHHHHHHHHHHHHHHHHHHhcccccch
Confidence            345677788999999988877776665554 57899999987521111    23444444444433333222211    2


Q ss_pred             hHHHHHHHHHHHHHHhhhhhhhHHHHHhhh---ccchhhHHhHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHH
Q 009978          422 PVMASAWLTLAIGMKSFSHSGFLVNLQEIA---PQYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLY  498 (521)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~  498 (521)
                      .....+.+++............-....|..   |+.+|...+.+.....+|++++..+.|.+.+..+ ++..|.+.+.+.
T Consensus        86 ~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~-~~~~f~i~~~~~  164 (433)
T PF03092_consen   86 AAIAVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFG-PQGVFLISAALP  164 (433)
T ss_pred             hhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCC-CeEEehHHHHHH
Confidence            222222222222222222223333333333   3458888999999999999999999999999876 777787777666


Q ss_pred             HHHHHHHHHhcc
Q 009978          499 FLSALFYIIFST  510 (521)
Q Consensus       499 ~~~~~~~~~~~~  510 (521)
                      ++..+..+.+.+
T Consensus       165 ~l~~~~~~~~~~  176 (433)
T PF03092_consen  165 LLMLIVALFLLE  176 (433)
T ss_pred             HHHHHHHHHhhh
Confidence            665544444443

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PRK03612 spermidine synthase; Provisional

Probab=97.57  E-value=0.0071  Score=61.32  Aligned_cols=140  Identities=19%  Similarity=0.201  Sum_probs=85.5

Q ss_pred             hhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHHH---HHHHhhhhhcc--ccc-hHHHHHHHHHHhh
Q 009978          128 AHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALW---SLATFLTPWAA--DTS-LLALLAMRAVVGL  201 (521)
Q Consensus       128 ~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~---~~~~~l~~~~~--~~~-~~~l~~~r~l~G~  201 (521)
                      -+|.+..+.+.+.+++..|..+|+.++|++.++.-++.. .+-..+.   .++..+.....  ... ...++...++.++
T Consensus        44 ~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~-~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~  122 (521)
T PRK03612         44 LLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFV-AVELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLLIGL  122 (521)
T ss_pred             HhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            468888899999999999999999999888744333322 2111111   11111111110  011 1223344556777


Q ss_pred             hhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHhh-hccCchhHHHHHHHHHHHHH
Q 009978          202 AEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILM-SQAGIFGPFVIFGLSGFLWV  269 (521)
Q Consensus       202 g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~-~~~gw~~~f~~~~~~~~i~~  269 (521)
                      ..|+..|....+..+.. .++-++..|.......+|.++|.++.+++. ..+|-....++.+.+.++..
T Consensus       123 l~G~~~Pl~~~~~~~~~-~~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a  190 (521)
T PRK03612        123 LIGMEIPLLMRILQRIR-DQHLGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAA  190 (521)
T ss_pred             HHHHHHHHHHHHHHhcc-ccchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence            78888887777666543 234567788888899999999999988765 46775555555554444433

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=97.23  E-value=0.056  Score=44.84  Aligned_cols=109  Identities=12%  Similarity=0.015  Sum_probs=70.1

Q ss_pred             hHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhhhhhhh
Q 009978          364 WFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGF  443 (521)
Q Consensus       364 ~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  443 (521)
                      .-.++......+..++.+.+.+++|.|         +.+.++.+...+........+ .+..+..-.+.+...+..+...
T Consensus        41 ~slai~Y~~~~~s~l~~P~iv~~lg~K---------~sm~lg~~~y~~y~~~~~~~~-~~~l~~~s~l~G~~~a~lW~aq  110 (156)
T PF05978_consen   41 YSLAILYGSFAISCLFAPSIVNKLGPK---------WSMILGSLGYAIYIASFFYPN-SYTLYPASALLGFGAALLWTAQ  110 (156)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHhhH---------HHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHhhhhHHhhHhh
Confidence            345566667778888899999999998         455555555554444443333 3333333334444444555555


Q ss_pred             HHHHHhhhc-cchhhHHhHHHHHHHHHHHHHHHHHHHHhh
Q 009978          444 LVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVE  482 (521)
Q Consensus       444 ~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~  482 (521)
                      -.++.+... +.+++..++...+.+.+.++|..+.-.+.+
T Consensus       111 g~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~~  150 (156)
T PF05978_consen  111 GTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFIFQ  150 (156)
T ss_pred             hHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            555555555 588999999999999888888877655543

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=97.21  E-value=0.00074  Score=64.57  Aligned_cols=177  Identities=12%  Similarity=0.079  Sum_probs=111.5

Q ss_pred             HHHHHHHHHHhhhhhhhhhhhhhhhhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcc-hHHHHHHHHHHHHHHh-
Q 009978          102 SMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGG-KIIMAWGVALWSLATF-  179 (521)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Gr-r~~~~~~~~~~~~~~~-  179 (521)
                      .++.+.+.+.....+.....+......-|.+....|+......++..+++...|.+.||... |.++++......++.. 
T Consensus       269 ~il~~~ygi~~g~F~~l~~~l~~~l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~  348 (480)
T KOG2563|consen  269 IILAICYGIGLGLFNSLSTLLNLALCPSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLM  348 (480)
T ss_pred             HHHHHHHhhhHHHHHHHHHHhhhccccccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence            33334444444444455555555555567777889999999999999999999999999864 5566665555555532 


Q ss_pred             hhhhcc-ccchHHHHHHHHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHhhhccC----c
Q 009978          180 LTPWAA-DTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAG----I  254 (521)
Q Consensus       180 l~~~~~-~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g----w  254 (521)
                      +..+.. ..+.+.++..-.+.|++.....|...-+-.|..-|..-+.-.|+.....++=.++-..+-+...+..+    |
T Consensus       349 l~~~t~~~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~  428 (480)
T KOG2563|consen  349 LLTCTLFLGDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAEDLGPPGNT  428 (480)
T ss_pred             HHHhhccCCceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhhccCCCCCC
Confidence            221111 12344566666778888888889888888886655555566777777666666666666677666655    4


Q ss_pred             hhHHHHHHHHHHHHHHHHHHhcCC
Q 009978          255 FGPFVIFGLSGFLWVLVWLSATSS  278 (521)
Q Consensus       255 ~~~f~~~~~~~~i~~i~~~~~~~~  278 (521)
                      ...-+......++.+++..+++|+
T Consensus       429 ~~~~i~~~~~~~l~~~lva~~r~~  452 (480)
T KOG2563|consen  429 FPANIFLTVSALLGAILVAFFRPD  452 (480)
T ss_pred             ccchhHhHHHHHHHHHHHhhhhhh
Confidence            433344444444444444454433

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=97.20  E-value=0.0049  Score=60.36  Aligned_cols=148  Identities=19%  Similarity=0.114  Sum_probs=104.7

Q ss_pred             HHHHHHHHHHHhhhhhhhhhhhhhhhhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHHHHHHHhh
Q 009978          101 VSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFL  180 (521)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~l  180 (521)
                      ++...++..+-++....++.....+...-|+++..+|..-+...+....+.....++.+|+|..|.-+++.........+
T Consensus       260 vflas~alalLY~TVLsf~~lmt~yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~  339 (432)
T PF06963_consen  260 VFLASFALALLYFTVLSFGGLMTAYLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLAL  339 (432)
T ss_pred             HHHHHHHHHHHHHHHhcCcHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHH
Confidence            44444444444444444555666666666999999999999999999999999999999999998877776644433322


Q ss_pred             h---hhccc-c----chHHHHHHHHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHh
Q 009978          181 T---PWAAD-T----SLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPIL  248 (521)
Q Consensus       181 ~---~~~~~-~----~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l  248 (521)
                      +   .+.+. +    +...++.+-++.=+|.=++..+..-++.|..|+++||...|.-....++-.++-..++-.+
T Consensus       340 ~v~~~~~~~~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ii~  415 (432)
T PF06963_consen  340 CVVSFWAPGSPFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTIIF  415 (432)
T ss_pred             HHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            2   12211 1    2333444444444555566778889999999999999999999999888888777665544

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=97.19  E-value=0.0044  Score=60.91  Aligned_cols=176  Identities=12%  Similarity=0.063  Sum_probs=96.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCCcccchhHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHH
Q 009978          326 TWSIIVANAMHSWGFFVILSWMPIYFNF-VYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSI  404 (521)
Q Consensus       326 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~  404 (521)
                      ++...+..++.......+..-.-+|+++ ..+.+....|++.+...++.++++++.|+...|.+.-+..      ++...
T Consensus        36 i~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~P------li~s~  109 (488)
T KOG2325|consen   36 IYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKP------LIVSF  109 (488)
T ss_pred             HHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccC------HHHHH
Confidence            4445555555554444444444456655 2466677799999999999999999999999988753211      12222


Q ss_pred             HHHHHHHHHH-HHhccchhHHHHHHHHHHHHHHhhh---hhhhHHHHHh-hhccchhhHHhHHHHHHHHHHHHHHHHHHH
Q 009978          405 GFIAPGIALI-GLTAAKSPVMASAWLTLAIGMKSFS---HSGFLVNLQE-IAPQYSGVLHGISNTAGTFAAILGTVGAGF  479 (521)
Q Consensus       405 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~  479 (521)
                      .....+-.+. .+....+....  .++++-.+.+.+   ....-.+..+ ..+++|.++++.......+|.++||.+...
T Consensus       110 ii~~~g~llY~~l~~~~~~~~y--~mL~~R~l~Gvg~~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~  187 (488)
T KOG2325|consen  110 LIAIIGNLLYLALAYVPNGVKY--LMLVARILTGVGVGNFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLA  187 (488)
T ss_pred             HHHHHHHHHHHHHHhcccchHH--HHHHHHHHcCcCcccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHH
Confidence            2222222222 33333321111  122222222222   2233344443 345788888888887777777777766543


Q ss_pred             Hhh------------cccchHHHHHHHHHHHHHHHHHHHHhc
Q 009978          480 FVE------------LVGSFQGFLLLTSLLYFLSALFYIIFS  509 (521)
Q Consensus       480 l~~------------~~g~~~~~~~~~~~~~~~~~~~~~~~~  509 (521)
                      +..            .+..|..+-++.+++.++.+++....-
T Consensus       188 f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f  229 (488)
T KOG2325|consen  188 FTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFF  229 (488)
T ss_pred             HhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhhe
Confidence            332            112366677777777777666555543

>KOG4830 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=97.17  E-value=0.00015  Score=63.42  Aligned_cols=64  Identities=3%  Similarity=0.083  Sum_probs=46.2

Q ss_pred             hHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhHhHHHHHHHHHHHHH
Q 009978          316 PFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYL  379 (521)
Q Consensus       316 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~  379 (521)
                      +|..-+++-.+..+.+.+.+.-...+.-..|++.|..+..+++....+++-.+..+.+...+.+
T Consensus       193 ~W~~WF~~v~~YQiAllYmLsRL~iNiSQaYlaFfviddlqm~qsakAllP~v~Yl~SF~VS~v  256 (412)
T KOG4830|consen  193 HWTSWFGHVQFYQIALLYMLSRLYINISQAYLAFFVIDDLQMEQSAKALLPMVAYLSSFSVSMV  256 (412)
T ss_pred             cchhhhhhhHHHHHHHHHHHHHHHhhhhhhheeeEEeehhhHHHHHhhhhHHHHHHhhhhHHhh
Confidence            4445566667777888888877777888888998888878887777777766666666555443

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=96.92  E-value=0.061  Score=52.00  Aligned_cols=160  Identities=10%  Similarity=0.029  Sum_probs=94.1

Q ss_pred             HHHHHHHHHHHHH-hCCCcccchhHhHHHHH-HHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHhcc
Q 009978          342 VILSWMPIYFNFV-YHIDLRQASWFSAVPWS-VMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAA  419 (521)
Q Consensus       342 ~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~-~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (521)
                      -...++..|+.+. .|++..+..--....+. ..++..+....+.|.++.|         .++.+..+...+...++.+.
T Consensus        21 PsEPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Yk---------pviil~~~~~i~t~~lll~~   91 (412)
T PF01770_consen   21 PSEPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYK---------PVIILQALSYIITWLLLLFG   91 (412)
T ss_pred             CCCccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhh---------HHHHHHHHHHHHHHHHHHHH
Confidence            3457788888876 78888876543333332 3344556777889999888         34444444433334444444


Q ss_pred             chhHHHHHHHHHHHHHHhhhhhhhHHHHH-hhhccchhhHHhHHHHHHHHHHHHHHHHHHHHhhc-ccchHHHHHHHHHH
Q 009978          420 KSPVMASAWLTLAIGMKSFSHSGFLVNLQ-EIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVEL-VGSFQGFLLLTSLL  497 (521)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~-~g~~~~~~~~~~~~  497 (521)
                      ++....-+.-++. +.....-...++++- .+++++.-++.+...+..-+|..++..++-.+... ..+|.....+....
T Consensus        92 ~sv~~mq~~q~~y-g~~~a~evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~  170 (412)
T PF01770_consen   92 TSVLAMQLMQFFY-GLATAAEVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLAS  170 (412)
T ss_pred             CcHHHHHHHHHHH-HHHHHHHHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence            4444333222222 222222333334333 34456777888888888888888888887777663 23566676666666


Q ss_pred             HHHHHHHHHHhccC
Q 009978          498 YFLSALFYIIFSTG  511 (521)
Q Consensus       498 ~~~~~~~~~~~~~~  511 (521)
                      ..++.+..+++++.
T Consensus       171 ~~~a~~~~~fLP~~  184 (412)
T PF01770_consen  171 VSLALLIALFLPMP  184 (412)
T ss_pred             HHHHHHHHHHcCCC
Confidence            66666666666543

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=96.73  E-value=0.17  Score=50.39  Aligned_cols=146  Identities=11%  Similarity=0.008  Sum_probs=82.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----CcccchhHhHHHHHHHHHH-HHHHHHHHHHHHhcCCCcchhH
Q 009978          325 PTWSIIVANAMHSWGFFVILSWMPIYFNFVYHI-----DLRQASWFSAVPWSVMAFT-GYLGGLLSDMLIQRGTSVTLTR  398 (521)
Q Consensus       325 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~-----~~~~~~~~~~~~~~~~~i~-~~~~g~l~dr~~~~~~~~~~~~  398 (521)
                      +++...+..++..+.++.     ---++|..+.     +.+...++.+...+...+. .++.+++++|+++++.      
T Consensus         8 k~~~~~l~fF~il~~Y~i-----LR~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~l------   76 (472)
T TIGR00769         8 KFLPLFLMFFCILFNYTI-----LRDTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEAL------   76 (472)
T ss_pred             HHHHHHHHHHHHHHHHHH-----HHhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHh------
Confidence            444455555554444333     2345666555     2345666666555555555 6888999999998832      


Q ss_pred             HHHHHHHHHHHHHHHHHHh---ccch--------------------------hHHHHHHHHHHHHHHhhhhh-hhHHHHH
Q 009978          399 KILQSIGFIAPGIALIGLT---AAKS--------------------------PVMASAWLTLAIGMKSFSHS-GFLVNLQ  448 (521)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~---~~~~--------------------------~~~~~~~~~~~~~~~~~~~~-~~~~~~~  448 (521)
                       .............++.+.   ..+.                          .|......+..-.+...... ..+..++
T Consensus        77 -f~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fan  155 (472)
T TIGR00769        77 -FYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFAN  155 (472)
T ss_pred             -HHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             212121111111111111   1111                          11111222223333344444 6678888


Q ss_pred             hhhc-cchhhHHhHHHHHHHHHHHHHHHHHHHHhh
Q 009978          449 EIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVE  482 (521)
Q Consensus       449 ~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~  482 (521)
                      |... ++..+-+++....+++|..+++.+..++.+
T Consensus       156 di~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~  190 (472)
T TIGR00769       156 QITTIDEAKRFYALFGLGANVALIFSGRTIKYFSK  190 (472)
T ss_pred             hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8887 588899999999999999999999888773

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.73  E-value=0.013  Score=60.32  Aligned_cols=182  Identities=10%  Similarity=0.055  Sum_probs=113.3

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHH
Q 009978          324 MPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQS  403 (521)
Q Consensus       324 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~  403 (521)
                      +.+..+.....+......++....-.-++++++++..+.|++.+.+-++..+...+..+...|..|.++         +.
T Consensus        96 k~fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~---------Ig  166 (735)
T KOG3626|consen   96 KMFLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRW---------IG  166 (735)
T ss_pred             chHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccce---------ee
Confidence            334433333333333333454445556677799999999999999999998888888888777666522         22


Q ss_pred             HHHHHHHHHHHHHhcc------------------------------------------------chhHHHHHHHHHHHHH
Q 009978          404 IGFIAPGIALIGLTAA------------------------------------------------KSPVMASAWLTLAIGM  435 (521)
Q Consensus       404 ~~~~~~~~~~~~~~~~------------------------------------------------~~~~~~~~~~~~~~~~  435 (521)
                      .+.+++++..++....                                                .+....+..++++-..
T Consensus       167 ~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l  246 (735)
T KOG3626|consen  167 IGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLL  246 (735)
T ss_pred             echhHHHHHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHH
Confidence            3333333222221100                                                0001123333444444


Q ss_pred             Hhhhhhh----hHHHHHhhhc-cchhhHHhHHHHHHHHHHHHHHHHHHHHhh------------------cccchHHHHH
Q 009978          436 KSFSHSG----FLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVE------------------LVGSFQGFLL  492 (521)
Q Consensus       436 ~~~~~~~----~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~------------------~~g~~~~~~~  492 (521)
                      .+++...    -..++.|... ++.....|+..++..+|-++|=.+++++..                  +.|.|+..|+
T Consensus       247 ~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFL  326 (735)
T KOG3626|consen  247 LGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFL  326 (735)
T ss_pred             hhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHH
Confidence            4444333    3455666665 477888899999988888888888887664                  2356888999


Q ss_pred             HHHHHHHHHHHHHHHhccCccc
Q 009978          493 LTSLLYFLSALFYIIFSTGERV  514 (521)
Q Consensus       493 ~~~~~~~~~~~~~~~~~~~~~~  514 (521)
                      +++.+.++..+.++.+++..++
T Consensus       327 i~g~~~~~~a~p~f~fPk~lp~  348 (735)
T KOG3626|consen  327 ICGALLLFSAVPLFFFPKELPK  348 (735)
T ss_pred             HHHHHHHHHHHHHHhCcccCcc
Confidence            9999999999988888775543

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.67  E-value=0.1  Score=51.45  Aligned_cols=143  Identities=13%  Similarity=0.133  Sum_probs=94.1

Q ss_pred             HHHHHHHhhhhhhhhhhhhhhh---hhhcCCcch-hhHHHHHHHHHHHHhhhhhHHHHhH---hcchHHHHHHHHHHHHH
Q 009978          105 ALALALCNADRVVMSVAIVPLS---LAHGWSRSF-SGIVQSSFLWGYLVSPIAGGTLVDY---YGGKIIMAWGVALWSLA  177 (521)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~s~~~-~g~~~s~~~~~~~i~~~~~G~l~dr---~Grr~~~~~~~~~~~~~  177 (521)
                      ....+..+...+.+....|.-.   ...+.+... .++..-...++..+++.+.+.+.+|   +||++.+.++..+..++
T Consensus       246 ~~~f~~tG~~~Sf~~~iypt~i~ft~~~~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~  325 (461)
T KOG3098|consen  246 FPFFFYTGLETSFWISIYPTCISFTRKLGSNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIG  325 (461)
T ss_pred             HHHHHHHHHHHHHHHhccchhhhhhhhccCcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHH
Confidence            3344444455555555544422   223333332 2333334455556666666666654   68999999988888877


Q ss_pred             Hhhhhhcc----------------ccchHHHHHHHHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHH
Q 009978          178 TFLTPWAA----------------DTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIG  241 (521)
Q Consensus       178 ~~l~~~~~----------------~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g  241 (521)
                      .++..+..                .+++...++..++.|++.+......+.++.+.. +++|..+.++...-..++..++
T Consensus       326 ~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~  404 (461)
T KOG3098|consen  326 FLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVA  404 (461)
T ss_pred             HHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHH
Confidence            77654431                124567778889999999999999999999999 5788888888888887777765


Q ss_pred             HHHHHHh
Q 009978          242 LVLSPIL  248 (521)
Q Consensus       242 ~~l~~~l  248 (521)
                      .......
T Consensus       405 ~f~~~~~  411 (461)
T KOG3098|consen  405 FFFSPYL  411 (461)
T ss_pred             hhhhhhh
Confidence            5554443

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=96.53  E-value=0.065  Score=53.11  Aligned_cols=111  Identities=15%  Similarity=0.053  Sum_probs=73.1

Q ss_pred             hHHHHHHHHHHHHhhhhhHHHHhHhcch-HHHHHHHH---HHHHHHhhhhhcc-------ccchHHHHHHHHHHhhhhcc
Q 009978          137 GIVQSSFLWGYLVSPIAGGTLVDYYGGK-IIMAWGVA---LWSLATFLTPWAA-------DTSLLALLAMRAVVGLAEGV  205 (521)
Q Consensus       137 g~~~s~~~~~~~i~~~~~G~l~dr~Grr-~~~~~~~~---~~~~~~~l~~~~~-------~~~~~~l~~~r~l~G~g~~~  205 (521)
                      -....++.++-.+|..+..+.. .-++| +.+.+..+   ++.-..++|..-+       -++-+..++..++.|+..|-
T Consensus       310 ~i~~~~fNvgD~vGR~~~~~~~-~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltnGy  388 (437)
T TIGR00939       310 IICFLLFNLFDWLGRSLTSKFM-WPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSNGY  388 (437)
T ss_pred             HHHHHHHHHHHHHHhhhhheeE-eeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhhhH
Confidence            3556677777777776544321 11222 12322222   2222233332210       04556677778999999999


Q ss_pred             hhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHh
Q 009978          206 ALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPIL  248 (521)
Q Consensus       206 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l  248 (521)
                      ....+..+..+..++++|..+-.+...+..+|..+|..++-.+
T Consensus       389 ~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~~~  431 (437)
T TIGR00939       389 LGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSFLF  431 (437)
T ss_pred             HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999988888776444

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=96.47  E-value=0.021  Score=41.43  Aligned_cols=76  Identities=17%  Similarity=0.206  Sum_probs=55.6

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCcccchhHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHh
Q 009978          338 WGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLT  417 (521)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (521)
                      .+-+.+...+|...+| .++|..+.+++.+...++..+|.+...++.++.+++         .+...+.+...+......
T Consensus         6 igRFayTplLP~M~~~-~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~---------~~~~~~l~~~~~~~~~ma   75 (85)
T PF06779_consen    6 IGRFAYTPLLPLMQAD-GGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPR---------RLLRAGLLLTVLSTAAMA   75 (85)
T ss_pred             hHHHHHHhHhHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHH---------HHHHHHHHHHHHHHHHHH
Confidence            4455667778887777 799999999999999999999999999888775444         344455555555555555


Q ss_pred             ccchhH
Q 009978          418 AAKSPV  423 (521)
Q Consensus       418 ~~~~~~  423 (521)
                      ..++.+
T Consensus        76 ~~~~~~   81 (85)
T PF06779_consen   76 LTHSFW   81 (85)
T ss_pred             HHhchH
Confidence            544443

Note that many members are hypothetical proteins.

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=96.46  E-value=0.31  Score=45.47  Aligned_cols=152  Identities=17%  Similarity=0.171  Sum_probs=85.8

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCc--ccchhHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHH
Q 009978          338 WGFFVILSWMPIYFNFVYHIDL--RQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIG  415 (521)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  415 (521)
                      ..........+.+..+ .+.+.  ...++..+...+...++.++.|++.||.|+|       +.................
T Consensus        16 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~-------~~~~~~~~~~~~~~~~~~   87 (338)
T COG0477          16 LDLGLLSPALPLLLST-LSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRR-------KVLIIGLLLFLLGTLLLA   87 (338)
T ss_pred             HhcchHHHHHHHHHHH-cCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccch-------HHHHHHHHHHHHHHHHHH
Confidence            3333444556666655 44444  3678888888888888889999999999776       112222211112211111


Q ss_pred             HhccchhHHHHHHHHHHHHHHhhhhhhhHHHHHhhhcc--chhhHHhHHHH-HHHHHHHHHHHHHHHHhhc-ccchHHHH
Q 009978          416 LTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQ--YSGVLHGISNT-AGTFAAILGTVGAGFFVEL-VGSFQGFL  491 (521)
Q Consensus       416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~~g~~~~-~~~~g~~~~~~~~g~l~~~-~g~~~~~~  491 (521)
                      +......+.............+...+....+..+..|+  .++...+.... ...++..+++.+.+.+.+. ...|...+
T Consensus        88 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (338)
T COG0477          88 LAPNVGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAF  167 (338)
T ss_pred             hCccchHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence            11111233333332222223334455666667777774  78888888888 5778888888777777665 11245544


Q ss_pred             HHHHHH
Q 009978          492 LLTSLL  497 (521)
Q Consensus       492 ~~~~~~  497 (521)
                      ......
T Consensus       168 ~~~~~~  173 (338)
T COG0477         168 LLAALL  173 (338)
T ss_pred             HHHHHH
Confidence            444333

>KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism]

Probab=96.09  E-value=0.11  Score=48.87  Aligned_cols=166  Identities=13%  Similarity=0.055  Sum_probs=94.6

Q ss_pred             HHHHHHHHHHhhhhhhhhhhhhhhhhhhcCCc-chhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHHHH-----
Q 009978          102 SMLALALALCNADRVVMSVAIVPLSLAHGWSR-SFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWS-----  175 (521)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~-----  175 (521)
                      +.+.+++++.....-++......++.+++-+. ...+.-...-.....+..++.|...|+..|+|++...+.+.=     
T Consensus        30 i~Ly~gy~lt~wgdR~W~F~VsL~M~~L~gnsl~lvAvyglvesgs~lvlg~ivGq~vDg~sr~Kvi~~~L~lqNlSv~v  109 (503)
T KOG2601|consen   30 IFLYLGYFLTTWGDRMWEFSVSLFMILLGGNSLLLVAVYGLVESGSQLVLGPIVGQWVDGMSRVKVIQTWLLLQNLSVIV  109 (503)
T ss_pred             ehhhHHHHHhHhhHhHHHHHHHHHHHHHcCceehhHHHHHHHHHhHHHhhHHHHHHHhcchhHHHHHHHHHhhccHHHHH
Confidence            34566677776666777777777777765533 333333344455567778888999999999998877655422     


Q ss_pred             -HHHhhhhhccc----cchHHHHHHHHHHhhhhcch----hhHHHHHHHhcC----CchhhH---HHHHHHHhhhhhhhH
Q 009978          176 -LATFLTPWAAD----TSLLALLAMRAVVGLAEGVA----LPAMNNMVARWF----PQTERA---RAVAIAMGGFTSGNA  239 (521)
Q Consensus       176 -~~~~l~~~~~~----~~~~~l~~~r~l~G~g~~~~----~~~~~~~i~~~~----~~~~r~---~~~~~~~~~~~~g~~  239 (521)
                       .+.++..+...    .++.++..+.++.-...+..    ......+-.||.    ..+.+.   +..+.....-..-.+
T Consensus       110 agglvi~~l~~~~~~~~t~pv~t~~lvLa~~i~aI~~Las~A~~i~i~RDWvvV~s~g~s~s~lt~mnatir~iDq~tn~  189 (503)
T KOG2601|consen  110 AGGLVITLLVHKDLKSATSPVFTVCLVLANLIAAIAVLASLAGTILIERDWVVVMSEGESPSVLTNMNATIRGIDQSTNL  189 (503)
T ss_pred             HHHHHhhheeecchhcccccHHHHHHHHHHHHHHHHHHHHhhheEEecccEEEEecCCCCHHHHhhcchhhhhhhhhhhc
Confidence             22233333321    24444444443332221111    111111223333    223333   333555566666788


Q ss_pred             HHHHHHHHhhhccCchhHHHHHHHHHHH
Q 009978          240 IGLVLSPILMSQAGIFGPFVIFGLSGFL  267 (521)
Q Consensus       240 ~g~~l~~~l~~~~gw~~~f~~~~~~~~i  267 (521)
                      +.|++.|.+.+..+-|..-...++-.++
T Consensus       190 Lapv~tg~Iitfvsl~~~~g~f~~w~~v  217 (503)
T KOG2601|consen  190 LAPVITGLIITFVSLRASAGTFAAWALV  217 (503)
T ss_pred             hhhhhhcccceeechhhhhhhhHHHHHH
Confidence            9999999999888888766555555544

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=95.54  E-value=0.0021  Score=65.41  Aligned_cols=165  Identities=13%  Similarity=0.076  Sum_probs=1.3

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCcccchhHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHh
Q 009978          338 WGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLT  417 (521)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (521)
                      ....++..-.-.-++++++++..++|++.+..-++..+..++..++.+|..|.+         .+..+.++.+++.+++.
T Consensus        16 ~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrpr---------wig~g~~~~~~g~~l~~   86 (539)
T PF03137_consen   16 MMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPR---------WIGIGALLMGLGSLLFA   86 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcc---------eeeecHHHHHHHHHHHh
Confidence            344444433444556679999999999999999999999988888888755442         22333333333333221


Q ss_pred             ccc----------------------------------------------hhHHHHHHHHHHHHHHhhhhhhh----HHHH
Q 009978          418 AAK----------------------------------------------SPVMASAWLTLAIGMKSFSHSGF----LVNL  447 (521)
Q Consensus       418 ~~~----------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~----~~~~  447 (521)
                      ..+                                              .....+..++++-...+++....    .+++
T Consensus        87 lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYi  166 (539)
T PF03137_consen   87 LPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYI  166 (539)
T ss_dssp             -----------------------------------------------------------------SSS------------
T ss_pred             ccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeee
Confidence            100                                              00112223333444444443333    3555


Q ss_pred             Hhhhc-cchhhHHhHHHHHHHHHHHHHHHHHHHHhh---------------------cccchHHHHHHHHHHHHHHHHHH
Q 009978          448 QEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVE---------------------LVGSFQGFLLLTSLLYFLSALFY  505 (521)
Q Consensus       448 ~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~---------------------~~g~~~~~~~~~~~~~~~~~~~~  505 (521)
                      .|..+ +..+...|+..++..+|-++|=.++|...+                     +.|.|+..|++.+++.++..+.+
T Consensus       167 DDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl  246 (539)
T PF03137_consen  167 DDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPL  246 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55554 477778888888888887777777776553                     23567888888888888888777


Q ss_pred             HHhccC
Q 009978          506 IIFSTG  511 (521)
Q Consensus       506 ~~~~~~  511 (521)
                      +.++|+
T Consensus       247 ~~FPk~  252 (539)
T PF03137_consen  247 FFFPKK  252 (539)
T ss_dssp             ------
T ss_pred             HcCCcc
Confidence            777654

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=94.43  E-value=0.36  Score=47.07  Aligned_cols=81  Identities=5%  Similarity=-0.016  Sum_probs=58.0

Q ss_pred             HHHHHHHHHhhhhhhhHHHHHhhhc----cchhhHHhHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHH
Q 009978          428 WLTLAIGMKSFSHSGFLVNLQEIAP----QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSAL  503 (521)
Q Consensus       428 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~  503 (521)
                      +.++..+.++ .=+.......+..+    +++...+..+....++|..++..+.+++-++.| |...|.+.++..+++.+
T Consensus        40 L~lia~G~G~-~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~-~~~~f~i~~~~~~~~~~  117 (372)
T PF00854_consen   40 LALIAVGTGG-IKPNISPFGADQYDEDDDSRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYG-WFLGFGIPAIGMLLALI  117 (372)
T ss_dssp             HHHHHHHHHC-CHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS--HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcccc-ccccHHHHHHHHhcccchhhhhhhHHHHHHHHhhhhHhhcccchhhccccc-hhhhhhHHHHHHHHHHH
Confidence            3334444333 33444444444443    356778889999999999999999999999988 99999999999988888


Q ss_pred             HHHHhcc
Q 009978          504 FYIIFST  510 (521)
Q Consensus       504 ~~~~~~~  510 (521)
                      .++.-++
T Consensus       118 ~f~~~~~  124 (372)
T PF00854_consen  118 VFLSGRK  124 (372)
T ss_dssp             HHHCCCC
T ss_pred             HHHhCCc
Confidence            7665443

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=94.31  E-value=2.8  Score=40.54  Aligned_cols=180  Identities=11%  Similarity=0.089  Sum_probs=79.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHH
Q 009978          326 TWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIG  405 (521)
Q Consensus       326 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~  405 (521)
                      ++..++.........+.+.+..+.|..+..+.++  .-.+.....+.+.+..++...+--+...|. +.+ .+..+....
T Consensus        20 ~~i~~llGiG~LlpWN~fiTa~~y~~~~~~~~~~--~~~F~~~~~~~a~i~~ll~~~~n~~~~~~~-~~~-~~~~l~~~~   95 (406)
T KOG1479|consen   20 YLIFLLLGIGTLLPWNMFITASDYYYYRFPGYHN--SKNFTSSYTLAAQIPLLLFNLLNAFLNTRL-RTR-VGYLLSLIA   95 (406)
T ss_pred             HHHHHHHhcccccchHhhhccHHHHHhhcCCCch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH-HHHHHHHHH
Confidence            3444444444555667777777766666444443  444444555555555555555444444331 000 000111111


Q ss_pred             HHHHHHHHHHHhccc-----hhHHHHHHHHHHHHHHhhhhhhhHHHHHhhhccchhhHHhHHHHHHHHHHHHHHHHHHHH
Q 009978          406 FIAPGIALIGLTAAK-----SPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFF  480 (521)
Q Consensus       406 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l  480 (521)
                      .+......+.+....     ..+...+.+++..+..+......+......++|.....++-.+..+.+....--..-...
T Consensus        96 il~i~~l~~~~v~~~~~~~~ff~vt~~~vv~~~~a~a~~qgs~~G~a~~~P~~ytqavm~G~a~aG~l~Sl~~i~tka~~  175 (406)
T KOG1479|consen   96 ILFIVTLDLALVKTDTWTNGFFLVTLIIVVLLNLANAVVQGSLYGLAGLFPSEYTQAVMSGQALAGTLTSLLRILTKAAF  175 (406)
T ss_pred             HHHHHHHHHHhhccCCccchhHHHHHHHHHHHhhhhhhhccchhhhhhcCCHHHHHHHHhcchhHhHHHHHHHHHHHHhc
Confidence            111111111221111     112222233334444455666777777777777554444333333333332222222222


Q ss_pred             hhcccchHHHHHHHHHHHHHHHHHHHHhc
Q 009978          481 VELVGSFQGFLLLTSLLYFLSALFYIIFS  509 (521)
Q Consensus       481 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  509 (521)
                      -|...+-...|.+..++.+++.+++..++
T Consensus       176 ~~~~~sA~~yF~~s~~~~llC~i~y~~l~  204 (406)
T KOG1479|consen  176 SDSRTSALIYFITSTVILLLCFVLYLVLP  204 (406)
T ss_pred             CCCCceeehhHHHHHHHHHHHHHHHHHhh
Confidence            22222244556666666777777776443

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=94.00  E-value=0.12  Score=49.93  Aligned_cols=149  Identities=14%  Similarity=0.045  Sum_probs=89.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHH
Q 009978          325 PTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSI  404 (521)
Q Consensus       325 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~  404 (521)
                      .........+...+++..=..++++|+++ .|.+....+.+....-+.+.+.+++.|..+||...|..+.    +..+..
T Consensus        33 ~li~v~~ia~Gvqf~wA~elsy~tPyl~~-lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRR----RPfI~~  107 (498)
T KOG0637|consen   33 KLISVASIAAGVQFGWALELSYLTPYLQS-LGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRR----RPFILA  107 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccccHHHHH-cCCCcccccccccccccccceecccccccccccccccccc----cchHHH
Confidence            34445555566667777778999999999 7999999999888888889999999999999754432221    122333


Q ss_pred             HHHHHHHHHHHHhccch--------h-----HHHHHHHHHHHHHH----hhhhhhhHHHHHhhhc-cchhh-HHhHHHHH
Q 009978          405 GFIAPGIALIGLTAAKS--------P-----VMASAWLTLAIGMK----SFSHSGFLVNLQEIAP-QYSGV-LHGISNTA  465 (521)
Q Consensus       405 ~~~~~~~~~~~~~~~~~--------~-----~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~-~~~g~-~~g~~~~~  465 (521)
                      +.....+.++.+.+...        .     ...++..+++....    .......-++..++.. +++.+ +++.+..+
T Consensus       108 ~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f  187 (498)
T KOG0637|consen  108 GSLLIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFF  187 (498)
T ss_pred             hhHHHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHH
Confidence            33333333333322211        1     12223333333222    2333444455566554 34444 88888888


Q ss_pred             HHHHHHHHHHHHH
Q 009978          466 GTFAAILGTVGAG  478 (521)
Q Consensus       466 ~~~g~~~~~~~~g  478 (521)
                      ..+|+.+|=.+.+
T Consensus       188 ~avGnvLGY~~g~  200 (498)
T KOG0637|consen  188 MAVGNVLGYALGS  200 (498)
T ss_pred             HHhcceeeeeccc
Confidence            8888777665554

>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs

Probab=93.50  E-value=0.026  Score=53.38  Aligned_cols=110  Identities=15%  Similarity=0.020  Sum_probs=3.7

Q ss_pred             HHHHHHHHHHHHhhhhhHHHHhHh-cchHHHHHH--HHHHHHHHhhhhhcc--------ccchHHHHHHHHHHhhhhcch
Q 009978          138 IVQSSFLWGYLVSPIAGGTLVDYY-GGKIIMAWG--VALWSLATFLTPWAA--------DTSLLALLAMRAVVGLAEGVA  206 (521)
Q Consensus       138 ~~~s~~~~~~~i~~~~~G~l~dr~-Grr~~~~~~--~~~~~~~~~l~~~~~--------~~~~~~l~~~r~l~G~g~~~~  206 (521)
                      ....++.++-.+|..+.++..-+. .+|++...+  =+++.-..++|-..+        -+|-+..++..++.|+..|-.
T Consensus       186 ~~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGyl  265 (309)
T PF01733_consen  186 VLFLLFNLGDFIGRFLASWPRWPGPSPRWLWILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGYL  265 (309)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHhcchhcceeEecccccccHHHHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccchh
Confidence            356678888888888777642111 244433321  122222222221110        035566777889999999999


Q ss_pred             hhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHH
Q 009978          207 LPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPI  247 (521)
Q Consensus       207 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~  247 (521)
                      ......+..+..++++|..+-.+......+|..+|..++-.
T Consensus       266 ~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls~~  306 (309)
T PF01733_consen  266 STLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLSFL  306 (309)
T ss_dssp             -HHHH------------------------------------
T ss_pred             hhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999888888888888888776543

Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.

>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]

Probab=93.31  E-value=0.63  Score=42.74  Aligned_cols=112  Identities=14%  Similarity=0.028  Sum_probs=75.9

Q ss_pred             cchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHH---HHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhhhcchhhH
Q 009978          133 RSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKII---MAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPA  209 (521)
Q Consensus       133 ~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~---~~~~~~~~~~~~~l~~~~~~~~~~~l~~~r~l~G~g~~~~~~~  209 (521)
                      ++|.-|....|.+|..+..--.-..-=+  .-+.   +-.-.+++.+......+.  ++++..++.-+.-|+-.|..++.
T Consensus       287 ~sqYRwyqvlYQlGVFiSRSS~~~~~~p--~l~~LailQ~vNl~ff~~~a~~~ft--psi~ivf~lI~~EGLlGGasYVN  362 (409)
T KOG3880|consen  287 DSQYRWYQVLYQLGVFISRSSINLFTMP--YLWLLAILQFVNLLFFLLQAWYWFT--PSIWIVFALILFEGLLGGASYVN  362 (409)
T ss_pred             hhcchhhheeeeeeEEEEeccceEEech--HHHHHHHHHHHHHHHHHHHHHHHhc--cHHHHHHHHHHHHhhcCchHHHH
Confidence            3456788888877665433211111000  1111   222233444444556676  89999999999999888888888


Q ss_pred             HHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHh
Q 009978          210 MNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPIL  248 (521)
Q Consensus       210 ~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l  248 (521)
                      ..--+.+-.++++|-.+++....+-++|..++..++-.+
T Consensus       363 Tf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalpl  401 (409)
T KOG3880|consen  363 TFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLALPL  401 (409)
T ss_pred             HHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHhccc
Confidence            888888888889999999999999999988877776444

>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs

Probab=93.00  E-value=0.03  Score=52.89  Aligned_cols=43  Identities=21%  Similarity=0.270  Sum_probs=0.0

Q ss_pred             HHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHH
Q 009978          196 RAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLV  243 (521)
Q Consensus       196 r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~  243 (521)
                      -++.|++.+.......++.+. +|++.    ...+..+.++++++..+
T Consensus         4 v~~~~~~~~~~q~s~~glas~-~p~~y----~~a~~~Gq~~aGv~~s~   46 (309)
T PF01733_consen    4 VALIGFANAVLQSSLFGLASL-FPPKY----TQAVMIGQGLAGVIVSL   46 (309)
T ss_dssp             ------------------------------------------------
T ss_pred             EEEEHhhhHHHhccHHHHHhc-CCHHH----HHHHHhhccHHHHHHHH
Confidence            345677777777777777775 55433    33444455555544433

Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=91.71  E-value=2.1  Score=42.44  Aligned_cols=64  Identities=9%  Similarity=0.003  Sum_probs=49.7

Q ss_pred             HHHHHHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHhhhccCch
Q 009978          192 LLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIF  255 (521)
Q Consensus       192 l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gw~  255 (521)
                      +++..++..+.....+++..++-+++.+|.--|..|.+.+...++|+---..+.-++++.+.++
T Consensus       408 vI~~~~l~sf~stvmFVai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD~fT~~  471 (544)
T PF13000_consen  408 VIIQHVLSSFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLWLVDYFTVA  471 (544)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhcCCCchHHHHHHHhhhcccc
Confidence            4455667777777888999999999999999999999999999999765555555555554444

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=90.72  E-value=3.7  Score=37.13  Aligned_cols=135  Identities=13%  Similarity=0.078  Sum_probs=83.8

Q ss_pred             hhHHHHHHHHHHHHhhhhhHHHHhHhcch--HHHHHHHHHHHHHHhhhhhc----cc-cchHHHHHHHHHHhhhhcchhh
Q 009978          136 SGIVQSSFLWGYLVSPIAGGTLVDYYGGK--IIMAWGVALWSLATFLTPWA----AD-TSLLALLAMRAVVGLAEGVALP  208 (521)
Q Consensus       136 ~g~~~s~~~~~~~i~~~~~G~l~dr~Grr--~~~~~~~~~~~~~~~l~~~~----~~-~~~~~l~~~r~l~G~g~~~~~~  208 (521)
                      -|.+.+.++++..+|+-+..++..|-..|  ..+.+..++.++...+..+.    +. .+...-+++-.+.-.+.|..+|
T Consensus       284 hGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~kes~~~s~i~F~~~E~cvGlfwP  363 (454)
T KOG4332|consen  284 HGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVSPSKESPSESLIGFCLFEACVGLFWP  363 (454)
T ss_pred             chhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccCCCcCCchHHHHHHHHHHHHHhhcch
Confidence            48899999999999999998888876654  45555555555544433222    11 1222224444555567788899


Q ss_pred             HHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHhhhccCchhHHHHHHHHHHHHHH
Q 009978          209 AMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVL  270 (521)
Q Consensus       209 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gw~~~f~~~~~~~~i~~i  270 (521)
                      ....+=.++.|++.|...+.++..-.++-..++-..--.-....+-|..|-++.+...+..+
T Consensus       364 SimkmRsqyIPEearstimNfFRvPLnifvClvLynlh~~~~p~~tr~mf~icS~~~~~a~i  425 (454)
T KOG4332|consen  364 SIMKMRSQYIPEEARSTIMNFFRVPLNIFVCLVLYNLHVDAFPTTTRNMFGICSAFLFVASI  425 (454)
T ss_pred             HHHHHHHhhCCHHHHhhhhhheechhhHhhhhhheecccccCccccchhhhhhHHHHHHHHH
Confidence            99999999999999998888866554443322211100000122456777777666555433

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=89.88  E-value=18  Score=34.23  Aligned_cols=152  Identities=18%  Similarity=0.186  Sum_probs=89.7

Q ss_pred             hhhhhhhh-hcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHH----HHHHHH---HHHHhhhhhccccchHHH
Q 009978          121 AIVPLSLA-HGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMA----WGVALW---SLATFLTPWAADTSLLAL  192 (521)
Q Consensus       121 ~~~~~~~~-~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~----~~~~~~---~~~~~l~~~~~~~~~~~l  192 (521)
                      .+..+... +|-.-.|.+.+.+.|...+.+|+...-++.|.--.-+.+.    +|++.-   .+..+.+++-..++-+.+
T Consensus        29 al~tLatyLlG~~Ilq~S~Iia~yl~amGlGs~~sry~~dd~~~~~Fv~vElllgligg~Sa~~ly~~FA~~~~~~~~Vl  108 (508)
T COG4262          29 ALGTLATYLLGGGILQTSLIIAGYLAAMGLGSLLSRYVLDDAALARFVDVELLLGLIGGVSAAALYLLFALESAPSRLVL  108 (508)
T ss_pred             HHHHHHHHhcCCceeehHHHHHHHHHHhchhhhhhccccCchHHHHHHHHHHHHHHhccchHHHHHHHHHhccchHHHHH
Confidence            33444444 3667778899999999999998888877777543332222    222211   111122222223567788


Q ss_pred             HHHHHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHhh-hccCchhHHHHHHHHHHHHHHH
Q 009978          193 LAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILM-SQAGIFGPFVIFGLSGFLWVLV  271 (521)
Q Consensus       193 ~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~-~~~gw~~~f~~~~~~~~i~~i~  271 (521)
                      ++.-++.|.-.|...|..+.++.+-.  .+.....+.....-.+|.+.+.++-.++. ...|.--.-...+++.++.++.
T Consensus       109 y~lt~vIG~LVG~EiPL~mrml~~r~--a~~k~~~s~vl~~DYLGal~~gLl~p~lllP~LGl~rta~laG~~Nl~aAvv  186 (508)
T COG4262         109 YALTAVIGVLVGAEIPLLMRMLQRRQ--AKAKDLGSRVLTLDYLGALAGGLLWPFLLLPRLGLVRTAALAGLCNLAAAVV  186 (508)
T ss_pred             HHHHHHHHHHHhcchHHHHHHHHHHH--HHHHhhhhhhhhhHhhhhhhHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHH
Confidence            88999999999999999999888722  22222333334446777777777666543 4455433334455555555544


Q ss_pred             HHH
Q 009978          272 WLS  274 (521)
Q Consensus       272 ~~~  274 (521)
                      .++
T Consensus       187 ~~f  189 (508)
T COG4262         187 TLF  189 (508)
T ss_pred             HHH
Confidence            333

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=89.43  E-value=7.2  Score=37.36  Aligned_cols=67  Identities=13%  Similarity=0.139  Sum_probs=39.4

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhHhHHHHHHHHHHHHHHHHHHH-----HHHhcCCCc
Q 009978          324 MPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSD-----MLIQRGTSV  394 (521)
Q Consensus       324 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~d-----r~~~~~~~~  394 (521)
                      +.+..+...+.++........ .+|.+++. .|.|-.+.+......+=-.  -.+++..+.|     |+|||+..+
T Consensus        31 ~~illLl~LYllQGiP~GL~~-~iP~lL~a-k~vSyt~~a~fS~ay~P~s--LKllWaPiVDs~y~k~~GrrksWv  102 (510)
T KOG3574|consen   31 SSILLLLFLYLLQGIPLGLIG-AIPLLLQA-KGVSYTSQAIFSFAYWPFS--LKLLWAPIVDSVYSKRFGRRKSWV  102 (510)
T ss_pred             hhHHHHHHHHHHcCCchhHhh-hhHHHhcC-CCcchhhhhhhhhhhhHHH--HHHHHHhhhHHHHHHhhcccccee
Confidence            345555666666655554444 78888886 5777766655433322211  2356666666     999986433

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=88.91  E-value=13  Score=38.50  Aligned_cols=171  Identities=18%  Similarity=0.135  Sum_probs=98.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHH
Q 009978          329 IIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIA  408 (521)
Q Consensus       329 ~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~  408 (521)
                      .+....+-..+++++...+-.|+.+.++.+...+.-....+........+++++++|-+--|-        ..+.++.++
T Consensus        42 il~~e~~e~~a~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry--------~tI~~~s~i  113 (571)
T KOG1237|consen   42 ILGNEVLERLAFFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRY--------FTINIGSLI  113 (571)
T ss_pred             HHHHHHHHHHhHhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHH--------HHHHHHHHH
Confidence            334444455566666777888888888888877777777766677777789999999875552        112222222


Q ss_pred             HHHHHHHHh-------cc-------------chhH-HHHHHHHHHHHHH----hhhhhhhHHHHHhhhc----c---chh
Q 009978          409 PGIALIGLT-------AA-------------KSPV-MASAWLTLAIGMK----SFSHSGFLVNLQEIAP----Q---YSG  456 (521)
Q Consensus       409 ~~~~~~~~~-------~~-------------~~~~-~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~----~---~~g  456 (521)
                      ..++..++.       ..             ..+. .....+.......    +..-+.......+-.+    +   ...
T Consensus       114 ~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~  193 (571)
T KOG1237|consen  114 SLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIP  193 (571)
T ss_pred             HHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcc
Confidence            111111111       00             0001 0111111111111    1112333333333332    1   334


Q ss_pred             hHHhHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHh
Q 009978          457 VLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYIIF  508 (521)
Q Consensus       457 ~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  508 (521)
                      .-+..+....++|..++..+.-++-+..| |...|.+..++.++++++++..
T Consensus       194 ~fFnW~yf~~~~g~l~a~t~~vyiq~~~~-w~lgf~i~~~~~~lai~iF~~g  244 (571)
T KOG1237|consen  194 SFFNWFYFSQNGGALLAQTVLVYIQDNVG-WKLGFGIPTVLNALAILIFLPG  244 (571)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHhhhhccc-ceeeccHHHHHHHHHHHHHHcC
Confidence            67788888889999999888888877776 8888888888888877776653

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=84.80  E-value=12  Score=35.41  Aligned_cols=95  Identities=14%  Similarity=0.016  Sum_probs=68.9

Q ss_pred             hHHHHHHHHHHHHhhhhhHHHHhHhcchHH--HHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhhhcchhhHHHHHH
Q 009978          137 GIVQSSFLWGYLVSPIAGGTLVDYYGGKII--MAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMV  214 (521)
Q Consensus       137 g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~--~~~~~~~~~~~~~l~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i  214 (521)
                      |..-++..+..+++.+..|.+--++.|..-  +.++.+..+...+++.-.  ++.|..+++.++.+.-.....+.+..-+
T Consensus       274 G~veAv~tlLGa~~~~~~g~l~i~w~r~g~~ll~~~s~~~agllf~m~~t--~~Iw~~Ya~yvlfr~~y~l~itiA~~~i  351 (433)
T KOG3810|consen  274 GAVEAVSTLLGAIAALAAGYLNINWNRWGDLLLAVGSAVQAGLLFIMAQT--QHIWVCYAGYVLFRVIYQLTITIATFQI  351 (433)
T ss_pred             CHHHHHHHHHHHHHHHHHHheeeccchhhHHHHHHHHHHhhhhhhhhhcc--cceehhhhhHHHHHhhHhhhhhHHHHHH
Confidence            666677778888889999999877777643  334444444444445555  8899988888888777777778888888


Q ss_pred             HhcCCchhhHHHHHHHHhh
Q 009978          215 ARWFPQTERARAVAIAMGG  233 (521)
Q Consensus       215 ~~~~~~~~r~~~~~~~~~~  233 (521)
                      ++...++.-|..+|+....
T Consensus       352 A~nL~~e~~gLvFGiNTFv  370 (433)
T KOG3810|consen  352 ARNLSSELFGLVFGINTFV  370 (433)
T ss_pred             HHhhhhhhheeeeehHHHH
Confidence            8888778888888876543

>KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism]

Probab=84.25  E-value=17  Score=34.77  Aligned_cols=170  Identities=14%  Similarity=0.118  Sum_probs=81.9

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHH
Q 009978          324 MPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQS  403 (521)
Q Consensus       324 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~  403 (521)
                      +....+.+.+++...+--....-...|+.+..|-+....+....+-+....+...+.|...|+..|.|...+..  .+--
T Consensus        27 ~~~i~Ly~gy~lt~wgdR~W~F~VsL~M~~L~gnsl~lvAvyglvesgs~lvlg~ivGq~vDg~sr~Kvi~~~L--~lqN  104 (503)
T KOG2601|consen   27 STVIFLYLGYFLTTWGDRMWEFSVSLFMILLGGNSLLLVAVYGLVESGSQLVLGPIVGQWVDGMSRVKVIQTWL--LLQN  104 (503)
T ss_pred             ceeehhhHHHHHhHhhHhHHHHHHHHHHHHHcCceehhHHHHHHHHHhHHHhhHHHHHHHhcchhHHHHHHHHH--hhcc
Confidence            34445566677776766666666677777754444444444444444555555666777788888874321110  1111


Q ss_pred             HHHHHHHHHHHHHhccc-----hhHHHHHHHHHHHHHHhhhhhhhHH----HHHh--------hhccchhhHHhHHHHHH
Q 009978          404 IGFIAPGIALIGLTAAK-----SPVMASAWLTLAIGMKSFSHSGFLV----NLQE--------IAPQYSGVLHGISNTAG  466 (521)
Q Consensus       404 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~--------~~~~~~g~~~g~~~~~~  466 (521)
                      .+.+.++..+..+...+     +..++..++++....+........+    ...+        -.|.......+.....-
T Consensus       105 lSv~vagglvi~~l~~~~~~~~t~pv~t~~lvLa~~i~aI~~Las~A~~i~i~RDWvvV~s~g~s~s~lt~mnatir~iD  184 (503)
T KOG2601|consen  105 LSVIVAGGLVITLLVHKDLKSATSPVFTVCLVLANLIAAIAVLASLAGTILIERDWVVVMSEGESPSVLTNMNATIRGID  184 (503)
T ss_pred             HHHHHHHHHHhhheeecchhcccccHHHHHHHHHHHHHHHHHHHHhhheEEecccEEEEecCCCCHHHHhhcchhhhhhh
Confidence            22333333222222222     2223333333333222222111110    0011        11122233335555566


Q ss_pred             HHHHHHHHHHHHHHhhcccchHHHHHHHHH
Q 009978          467 TFAAILGTVGAGFFVELVGSFQGFLLLTSL  496 (521)
Q Consensus       467 ~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~  496 (521)
                      .....+.|.+.|.+....+ ....-.++++
T Consensus       185 q~tn~Lapv~tg~Iitfvs-l~~~~g~f~~  213 (503)
T KOG2601|consen  185 QSTNLLAPVITGLIITFVS-LRASAGTFAA  213 (503)
T ss_pred             hhhhchhhhhhcccceeec-hhhhhhhhHH
Confidence            6788899999999988765 4443333333

>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=80.28  E-value=6.7  Score=29.54  Aligned_cols=33  Identities=21%  Similarity=0.055  Sum_probs=20.1

Q ss_pred             HHHHHHHHHhhhhhHHHHhHh-cchHHHHHHHHH
Q 009978          141 SSFLWGYLVSPIAGGTLVDYY-GGKIIMAWGVAL  173 (521)
Q Consensus       141 s~~~~~~~i~~~~~G~l~dr~-Grr~~~~~~~~~  173 (521)
                      +.-+++..+.....||+.||| |.++..++..++
T Consensus        49 ssefIsGilVGa~iG~llD~~agTsPwglIv~ll   82 (116)
T COG5336          49 SSEFISGILVGAGIGWLLDKFAGTSPWGLIVFLL   82 (116)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence            334455555566679999997 556555444433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	521
1pw4_A	451	Crystal Structure Of The Glycerol-3-Phosphate Trans		1e-04

>pdb|1PW4|A Chain A, Crystal Structure Of The Glycerol-3-Phosphate Transporter From E.Coli Length = 451

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 60/254 (23%), Positives = 98/254 (38%), Gaps = 24/254 (9%)
Query: 123 VPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWS---LATF 179
           +P  +  G+SR   G   S     Y  S    G++ D    ++ +  G+ L +   L   
Sbjct: 51  MPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMG 110
Query: 180 LTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNA 239
             PWA  +S+  +  +  + G  +G+  P     +  W+ Q ER   V++       G  
Sbjct: 111 FVPWAT-SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGG 169
Query: 240 IGLVLSPILMS-----QAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRH--PQISKYELE 292
           I  +L  + M+      A ++ P         L  L   +    TP     P I +Y+ +
Sbjct: 170 IPPLLFLLGMAWFNDWHAALYMP----AFCAILVALFAFAMMRDTPQSCGLPPIEEYKND 225
Query: 293 Y--ILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIY 350
           Y     EK +  L   +     V+P   +LL     W I +AN       + IL W P Y
Sbjct: 226 YPDDYNEKAEQELTAKQIFMQYVLP--NKLL-----WYIAIANVFVYLLRYGILDWSPTY 278
Query: 351 FNFVYHIDLRQASW 364
              V H  L ++SW
Sbjct: 279 LKEVKHFALDKSSW 292

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	521
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	3e-61
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	6e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
2cfq_A	417	Lactose permease; transport, transport mechanism,	9e-05

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451

 Score =  207 bits (528), Expect = 3e-61
 Identities = 72/423 (17%), Positives = 147/423 (34%), Gaps = 25/423 (5%)

Query: 97  RVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGT 156
           R ++   +    A     R   ++A+ P  +  G+SR   G   S     Y  S    G+
Sbjct: 26  RWQIFLGIFFGYAAYYLVRKNFALAM-PYLVEQGFSRGDLGFALSGISIAYGFSKFIMGS 84

Query: 157 LVDYYGGKIIMAWGVALWSLATFLTPWA--ADTSLLALLAMRAVVGLAEGVALPAMNNMV 214
           + D    ++ +  G+ L +       +   A +S+  +  +  + G  +G+  P     +
Sbjct: 85  VSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTM 144

Query: 215 ARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQA-----GIFGPFVIFGLSGFLWV 269
             W+ Q ER   V++    +   + +G  + P+L                +      L  
Sbjct: 145 VHWWSQKERGGIVSV----WNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVA 200

Query: 270 LVWLSATSSTPD--RHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTW 327
           L   +    TP     P I +Y+ +Y     +K      + +        + +L     W
Sbjct: 201 LFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKA-----EQELTAKQIFMQYVLPNKLLW 255

Query: 328 SIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDML 387
            I +AN       + IL W P Y   V H  L ++SW   +          L G +SD +
Sbjct: 256 YIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV 315

Query: 388 IQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNL 447
            +     T    +      +     +  +  A +P +    + +   +         ++ 
Sbjct: 316 FRGNRGATGVFFMT----LVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHA 371

Query: 448 QEIAP-QYSGVLHGISNTAG-TFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFY 505
            E+AP + +G   G +   G    ++  +   G+ V+  G   GF+++         L  
Sbjct: 372 LELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLI 431

Query: 506 IIF 508
           ++ 
Sbjct: 432 VVM 434

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} Length = 375

 Score = 53.8 bits (130), Expect = 6e-08
 Identities = 50/355 (14%), Positives = 108/355 (30%), Gaps = 51/355 (14%)

Query: 141 SSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVG 200
            ++L  Y VS +  G + D  G + ++  G++++ LAT +      +SL  L+A  A+ G
Sbjct: 42  GAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTT--SSLTVLIAASAMQG 99

Query: 201 LAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAG---IFGP 257
           +  GV       +    + +T+   A ++   G      +  ++  +L +       +  
Sbjct: 100 MGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLF 159

Query: 258 FVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPF 317
            ++        +  W+  T        ++        L                     +
Sbjct: 160 LLVLCAGVTFSMARWMPETRPVDAPRTRL--------LTS-------------------Y 192

Query: 318 RRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTG 377
           + L         ++       G     +   +    V  +     S    +P        
Sbjct: 193 KTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAF--- 249

Query: 378 YLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKS 437
             G   +    +R +++            I   +A + +       + + W  L      
Sbjct: 250 -FGAWFAGRPNKRFSTLMW-------QSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALF 301

Query: 438 FSHSGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTV---GAGFFVELVGSFQG 489
           F  +G L          SG +      AGT  A++G +   G+G    L      
Sbjct: 302 FFGAGML-----FPLATSGAMEPFPFLAGTAGALVGGLQNIGSGVLASLSAMLPQ 351

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.4 bits (109), Expect = 2e-05
 Identities = 33/255 (12%), Positives = 64/255 (25%), Gaps = 93/255 (36%)

Query: 180 LTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARW-------FPQTERARAVAIAMG 232
           L      T+   L ++     +AE     ++ + +A W         +       ++   
Sbjct: 318 LPREVLTTNPRRL-SI-----IAE-----SIRDGLATWDNWKHVNCDKLTTIIESSLN-- 364

Query: 233 GFTSGNAIGLVLSPILMSQAGIFGPFVIF--------GLSGFLW---------VLVWLSA 275
                     VL P    +  +F    +F         L   +W         V+V    
Sbjct: 365 ----------VLEPAEYRK--MFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLH 412

Query: 276 TSSTPDRHPQISKYELEYI-LREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANA 334
             S  ++ P+ S   +  I L  K K       H         R ++         +   
Sbjct: 413 KYSLVEKQPKESTISIPSIYLELKVKLENEYALH---------RSIVDHYN-----IPKT 458

Query: 335 MHSWGFFVILSWMPIYFNFVYHI-----------------DLRQASWFSA------VPWS 371
             S            Y +  +H+                 D R   +           W+
Sbjct: 459 FDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFR---FLEQKIRHDSTAWN 515

Query: 372 VMAFTGYLGGLLSDM 386
               +G +   L  +
Sbjct: 516 A---SGSILNTLQQL 527

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* Length = 417

 Score = 43.8 bits (103), Expect = 9e-05
 Identities = 56/405 (13%), Positives = 124/405 (30%), Gaps = 33/405 (8%)

Query: 125 LSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFL---- 180
           L   +  S+S +GI+ ++     L+     G L D  G +  + W +    +        
Sbjct: 34  LHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIF 93

Query: 181 --TPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGN 238
              P      L+  +     +G       PA+   + +   ++      A   G    G 
Sbjct: 94  IFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFG--CVGW 151

Query: 239 AIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREK 298
           A+G  +  I+ +    F  ++  G +  L VL++ + T +        +           
Sbjct: 152 ALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAV---------- 201

Query: 299 QKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHID 358
                    +  A  +     L  +   W + +     S  + V       +F   +   
Sbjct: 202 -------GANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFF-TSFFAT 253

Query: 359 LRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTA 418
             Q +       ++           + ++I R     +  K    +      + +IG + 
Sbjct: 254 GEQGTRVFGYVTTMGELLNASIMFFAPLIINR-----IGGKNALLLAGTIMSVRIIGSSF 308

Query: 419 AKSPVMASAWLTL-AIGMKSFSHSGFLVNLQEIAPQYSGVLHGISNTAGT-FAAILGTVG 476
           A S +      TL    +       F     +   ++S  ++ +        A I  +V 
Sbjct: 309 ATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVL 368

Query: 477 AGFFVELVGSFQGFLLLTSLLYFLSALFYIIFSTGERVNFDEAAL 521
           AG   E +G    +L+L  +    + +     S    ++     +
Sbjct: 369 AGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLSLLRRQV 413

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	521
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	100.0
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	100.0
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	100.0
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	100.0
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	100.0
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.98
2xut_A	524	Proton/peptide symporter family protein; transport	99.96
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.64
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.53
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.51
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.47
2xut_A	524	Proton/peptide symporter family protein; transport	99.37
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.29
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.28

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=100.00  E-value=5.7e-41  Score=335.92  Aligned_cols=398  Identities=18%  Similarity=0.215  Sum_probs=313.5

Q ss_pred             cchhHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHH
Q 009978           94 TSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVAL  173 (521)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~  173 (521)
                      ++.+++.+..+++..+...++...+.+.+|.+.+++ .+..+.|++.+++.++..++++++|+++||+|||++++++.++
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~  101 (451)
T 1pw4_A           23 RRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLIL  101 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHH
Confidence            445677788888888999999999999999999999 9999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhh----ccccchHHHHHHHHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHhh
Q 009978          174 WSLATFLTPW----AADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILM  249 (521)
Q Consensus       174 ~~~~~~l~~~----~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~  249 (521)
                      .+++.+++++    +  ++++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+.++|.+++|.+++++.
T Consensus       102 ~~~~~~~~~~~~~~~--~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~  179 (451)
T 1pw4_A          102 AAAVMLFMGFVPWAT--SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGM  179 (451)
T ss_dssp             HHHHHHHHHHCHHHH--SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhcc--ccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999998    8  899999999999999999999999999999999999999999999999999999999999988


Q ss_pred             hccC-chhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHHhhccccccCCCCCCCCCCch--HHHHHhcchH
Q 009978          250 SQAG-IFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPP--FRRLLSKMPT  326 (521)
Q Consensus       250 ~~~g-w~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~  326 (521)
                      +..| ||+.|++.+++.++..++.++..||+|+.....++++.+...+..     .+++++++....+  .++.+++|.+
T Consensus       180 ~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~  254 (451)
T 1pw4_A          180 AWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDD-----YNEKAEQELTAKQIFMQYVLPNKLL  254 (451)
T ss_dssp             HHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC------------------CCTHHHHHHTSSCHHH
T ss_pred             HHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhccccccc-----chhhhhcccccccchHHHHHcCHHH
Confidence            9898 999999999988877777666677766543221111100000000     0000111111222  4678889999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhHhHHHHHHHHHHHHHHHHHHHHH--HhcCCCcchhHHHHHHH
Q 009978          327 WSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDML--IQRGTSVTLTRKILQSI  404 (521)
Q Consensus       327 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~--~~~~~~~~~~~~~~~~~  404 (521)
                      +...+..++.......+..+.|.|+++.+|+++.+.+++.+...++.+++.++.+++.||+  ++|         .....
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~---------~~~~~  325 (451)
T 1pw4_A          255 WYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNR---------GATGV  325 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCH---------HHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc---------hhHHH
Confidence            9999999999999999999999999998899999999999999999999999999999998  766         22222


Q ss_pred             HHHHHH-HHHHHHhcc--chhHHHHHHHHHHHHHHhhhhhhhHHHHHhhhc-cchhhHHhHHHHHHHH-HHHHHHHHHHH
Q 009978          405 GFIAPG-IALIGLTAA--KSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTF-AAILGTVGAGF  479 (521)
Q Consensus       405 ~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~-g~~~~~~~~g~  479 (521)
                      +..+.. +.++.+...  .+.+......++.+...+...+....+..+..| +++|++.|+.+...++ |..++|.+.|.
T Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~  405 (451)
T 1pw4_A          326 FFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGY  405 (451)
T ss_dssp             HHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            222222 334444333  233333333333333333444445566667666 5899999999999999 99999999999


Q ss_pred             HhhcccchHHHHHHHHHHHHHHHHHHHHhc
Q 009978          480 FVELVGSFQGFLLLTSLLYFLSALFYIIFS  509 (521)
Q Consensus       480 l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  509 (521)
                      +.|..| +...|++.+++.+++.++.+...
T Consensus       406 l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~  434 (451)
T 1pw4_A          406 TVDFFG-WDGGFMVMIGGSILAVILLIVVM  434 (451)
T ss_dssp             HHHSSC-SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhcC-cHHHHHHHHHHHHHHHHHHHHHH
Confidence            999988 89999988888887777666554

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=100.00  E-value=2.5e-39  Score=322.73  Aligned_cols=373  Identities=14%  Similarity=0.097  Sum_probs=300.1

Q ss_pred             hhHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHHHH
Q 009978           96 ERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWS  175 (521)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~  175 (521)
                      +++..+..+++..+...++.....+..|.+.+++|.++.+.|++.+++.++..++++++|+++||+|||++++++.++.+
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~  102 (438)
T 3o7q_A           23 SYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYA  102 (438)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHH
Confidence            34556667777788888888899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhh---hhccccchHHHHHHHHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHhh-hc
Q 009978          176 LATFLT---PWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILM-SQ  251 (521)
Q Consensus       176 ~~~~l~---~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~-~~  251 (521)
                      ++.+++   .++  ++++.++++|++.|++.+...+...+++.|++|+++|++++++.+.+.++|.++++.+++.+. +.
T Consensus       103 ~~~~~~~~~~~~--~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~  180 (438)
T 3o7q_A          103 LGAALFWPAAEI--MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSN  180 (438)
T ss_dssp             HHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTS
T ss_pred             HHHHHHHhcccc--ccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            999988   777  899999999999999999999999999999999999999999999999999999999999998 55


Q ss_pred             cC-------------------------chhHHHHHHHHHHHHHHHHHHh-cCCCCCCCCCCchhHHHHHHHhhccccccC
Q 009978          252 AG-------------------------IFGPFVIFGLSGFLWVLVWLSA-TSSTPDRHPQISKYELEYILREKQKPLLMG  305 (521)
Q Consensus       252 ~g-------------------------w~~~f~~~~~~~~i~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (521)
                      .+                         ||+.|++.+++.++..++.++. .||.++++                     +
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~---------------------~  239 (438)
T 3o7q_A          181 VPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDN---------------------H  239 (438)
T ss_dssp             SCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTC---------------------C
T ss_pred             cccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccc---------------------c
Confidence            54                         9999988887766655544443 22222111                     0


Q ss_pred             CCCCCCCCCchHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhCCCcccchhHhHHHHHHHHHHHHHHHHHH
Q 009978          306 NKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIY-FNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLS  384 (521)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~  384 (521)
                      +++++.....++++++++|.++...+..++.......+..+.|.| +++.+|++..+++...+...++..+++++.+++.
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~  319 (438)
T 3o7q_A          240 SDAKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLI  319 (438)
T ss_dssp             CCSSTTSHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccchhhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            111222334567889999999999999999888889999999999 8887799999999999999999999999999999


Q ss_pred             HHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhhhhhhhHHHHHhhhccchhhHHhHHHH
Q 009978          385 DMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGISNT  464 (521)
Q Consensus       385 dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~  464 (521)
                      ||+++|         ..+..+.++..+.++.+...++.+..+...+++. ..+...+....+..+..|++++++.++.. 
T Consensus       320 ~r~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  388 (438)
T 3o7q_A          320 SRFAPH---------KVLAAYALIAMALCLISAFAGGHVGLIALTLCSA-FMSIQYPTIFSLGIKNLGQDTKYGSSFIV-  388 (438)
T ss_dssp             HHSCHH---------HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH-HHTTHHHHHHHHHHSSCGGGHHHHHHHHH-
T ss_pred             HHhcch---------HHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH-HHHHHHHHHHHHHHhhccccccchhhHHH-
Confidence            999988         2333444444444445555555544444433443 33444556666656666666888888876 


Q ss_pred             HHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHH
Q 009978          465 AGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSA  502 (521)
Q Consensus       465 ~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~  502 (521)
                      ...+|..++|.+.|.+.|..|++...|++.+++.++..
T Consensus       389 ~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~  426 (438)
T 3o7q_A          389 MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIF  426 (438)
T ss_dssp             HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence            77899999999999999998767888877665544433

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=100.00  E-value=1.5e-36  Score=296.15  Aligned_cols=359  Identities=13%  Similarity=0.083  Sum_probs=289.5

Q ss_pred             HHHHHHHHHHhhhhhhhhhhhhhhhhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHHHHHHHhhh
Q 009978          102 SMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLT  181 (521)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~l~  181 (521)
                      ..+++..+...+....+.+.+|.+.+++|.++.+.+++.+++.++..++++++|+++||+|||+++.++.++.+++.+++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~   82 (375)
T 2gfp_A            3 LMLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVA   82 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHH
Confidence            44566777788888899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhccccchHHHHHHHHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHhhhccCchhHHHHH
Q 009978          182 PWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIF  261 (521)
Q Consensus       182 ~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gw~~~f~~~  261 (521)
                      .++  ++++.+++.|++.|++.+...+...+++.|++|+++|++++++.+....+|..++|.+++++.+..|||+.|++.
T Consensus        83 ~~~--~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~  160 (375)
T 2gfp_A           83 VTT--SSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFL  160 (375)
T ss_dssp             HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred             HHh--ccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHH
Confidence            998  999999999999999999999999999999999999999999999999999999999999999988999999998


Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHHhhccccccCCCCCCCCCCchHHHHHhcchHHHHHHHHHHHHHHHH
Q 009978          262 GLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFF  341 (521)
Q Consensus       262 ~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  341 (521)
                      ++..++..+...+..||+++++++                        +++..+++++.+++|.++...+..++......
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (375)
T 2gfp_A          161 LVLCAGVTFSMARWMPETRPVDAP------------------------RTRLLTSYKTLFGNSGFNCYLLMLIGGLAGIA  216 (375)
T ss_dssp             HHHHHHHHCCCCCSSCCCSTTTCC------------------------CCCTTTCSTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCcccCCCCcc------------------------cccHHHHHHHHhcCcchHHHHHHHHHHHHHHH
Confidence            888776655444445554332110                        11223345678889999999999999888999


Q ss_pred             HHHHHHHHHHHHHhCCCcccchhHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHH-HHHHHHHHHHhc--
Q 009978          342 VILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGF-IAPGIALIGLTA--  418 (521)
Q Consensus       342 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--  418 (521)
                      .+..+.|.|+++.+|.++.+.+...+...++..++.++.+++.||.+++         ....... ...+...+....  
T Consensus       217 ~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~---------~~~~~~~~~~~~~~~~~~~~~~  287 (375)
T 2gfp_A          217 AFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL---------MWQSVICCLLAGLLMWIPDWFG  287 (375)
T ss_dssp             HHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH---------HHHHHHHHHHTSSSSSHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHhhhc
Confidence            9999999999998899999999999999999999999999999998874         2222211 111111111111  


Q ss_pred             cchhHHHHHHHHHHHHHHhhhhhhhHHHHHhhhccchhhHHhHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHH
Q 009978          419 AKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSL  496 (521)
Q Consensus       419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~  496 (521)
                      .++.+......++.....+...+....+..+..|+++|++.|+.+...++|..++|.+.|.+.+..+ +...+.+.++
T Consensus       288 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~-~~~~~~~~~~  364 (375)
T 2gfp_A          288 VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFPFLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQ-GSLGLLMTLM  364 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHHHHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHH-HHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcccchHHHHHHHHHHHHHHHHHHHHHHHhcCCc-ccHHHHHHHH
Confidence            1233333333333334444556666777777778999999999999999999999999999988655 7666665443

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=100.00  E-value=1.3e-32  Score=278.23  Aligned_cols=396  Identities=13%  Similarity=0.115  Sum_probs=268.9

Q ss_pred             HHHHHHhhhhhhhhh-hhhhhhhh-----hcCCcchhhHHHHHHHHHHHHhhhhhHHHHhH-hcchHHHHHHHHHHHHHH
Q 009978          106 LALALCNADRVVMSV-AIVPLSLA-----HGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDY-YGGKIIMAWGVALWSLAT  178 (521)
Q Consensus       106 ~~~~~~~~~~~~~~~-~~~~~~~~-----~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr-~Grr~~~~~~~~~~~~~~  178 (521)
                      +..+...+....... ..+.+.++     +|.+..+.+++.+++.++..++++++|+++|| +|||+++.++.++.+++.
T Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~   99 (491)
T 4aps_A           20 MTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGH   99 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHH
Confidence            334444443334433 34444444     99999999999999999999999999999999 899999999999999999


Q ss_pred             hhhhhccccchHHHHHHHHHHhhhhcchhhHHHHHHHhcCCchh--hHHHHHHHHhhhhhhhHHHHHHHHHhhhccCchh
Q 009978          179 FLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTE--RARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFG  256 (521)
Q Consensus       179 ~l~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gw~~  256 (521)
                      ++++++  ++++.++++|+++|++.+...+...+++.|++|+++  |+.++++++...++|..++|.+++.+.+..|||+
T Consensus       100 ~~~~~~--~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~  177 (491)
T 4aps_A          100 IVLALP--FGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHV  177 (491)
T ss_dssp             HHHHSC--CSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHH
T ss_pred             HHHHHh--hhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence            999998  999999999999999999999999999999999988  7788998999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCCCC-----CCCchhHHHHHHHh----------------hccccccCCC--------
Q 009978          257 PFVIFGLSGFLWVLVWLSATSSTPDRH-----PQISKYELEYILRE----------------KQKPLLMGNK--------  307 (521)
Q Consensus       257 ~f~~~~~~~~i~~i~~~~~~~~~~~~~-----~~~~~~~~~~~~~~----------------~~~~~~~~~~--------  307 (521)
                      .|++.++..++..+..++..++..++.     ...++++.+...+.                ..+.....+.        
T Consensus       178 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (491)
T 4aps_A          178 AFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVA  257 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHH
Confidence            999988777666555544433221111     11112222211111                0000000000        


Q ss_pred             ---------CCCCCCCchHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhHhHHHHHHHHHHHH
Q 009978          308 ---------HKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGY  378 (521)
Q Consensus       308 ---------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~  378 (521)
                               ...+.......+..+....+...+..++....+.....+++.|..+..+.+....+.......++..++.+
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (491)
T 4aps_A          258 IAIPVFYFAWMISSVKVTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTP  337 (491)
T ss_dssp             HHHHHHHHHHHC------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHH
Confidence                     00000000001111223345555556666666666778888999987788878889999999999999999


Q ss_pred             HHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHhcc---------chhHHHHHHHHHHHHHHhhhhhhhHHHHHh
Q 009978          379 LGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAA---------KSPVMASAWLTLAIGMKSFSHSGFLVNLQE  449 (521)
Q Consensus       379 ~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  449 (521)
                      +.+++.||++||+...    ...+..+..+.++..+.+...         .+.+......++.....+...+....+..+
T Consensus       338 ~~~~l~~r~~~r~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~  413 (491)
T 4aps_A          338 FFAWLWTAWKKNQPSS----PTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTK  413 (491)
T ss_dssp             HHHHHHHHTTTC---C----HHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHH
T ss_pred             HHHHHHHHHhccCCCc----hHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            9999999999885321    112223333333333322221         133333333333333334444555666677


Q ss_pred             hhc-cchhhHHhHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHhc
Q 009978          450 IAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYIIFS  509 (521)
Q Consensus       450 ~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  509 (521)
                      ..| +.||++.|+.+....+|..+++.+.+.+.+. + +...|...+++.+++.++.+...
T Consensus       414 ~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~  472 (491)
T 4aps_A          414 LAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK-S-EVAYFSYFGLGSVVLGIVLVFLS  472 (491)
T ss_dssp             HTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS-S-TTHHHHHTHHHHHHHHHHHHHC-
T ss_pred             hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-c-HHHHHHHHHHHHHHHHHHHHHHH
Confidence            766 5899999999999999999999999988775 3 66777777777666666555543

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=100.00  E-value=1.8e-32  Score=277.40  Aligned_cols=410  Identities=15%  Similarity=0.098  Sum_probs=272.0

Q ss_pred             chhHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcC--------CcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHH
Q 009978           95 SERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGW--------SRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKII  166 (521)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~  166 (521)
                      ++.+.+.++.+++.++.+++...++..+|.+.++++.        +..+.|++.+++.+|..++++++|+++||+|||++
T Consensus         8 ~y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~   87 (491)
T 4gc0_A            8 SYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDS   87 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence            4445566666778888899999999999998887743        34567899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhh------------------ccccchHHHHHHHHHHhhhhcchhhHHHHHHHhcCCchhhHHHHH
Q 009978          167 MAWGVALWSLATFLTPW------------------AADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVA  228 (521)
Q Consensus       167 ~~~~~~~~~~~~~l~~~------------------~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~  228 (521)
                      ++++.+++.++.+++++                  +  +|++.++++|+++|+|.|...+....+++|+.|+++|++..+
T Consensus        88 l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a--~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~  165 (491)
T 4gc0_A           88 LKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLA--GYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVS  165 (491)
T ss_dssp             HHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGG--GCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHH
Confidence            99999999999998874                  5  899999999999999999999999999999999999999999


Q ss_pred             HHHhhhhhhhHHHHHHHHHhhhc--------cCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCC-CchhHHHHHHHhhc
Q 009978          229 IAMGGFTSGNAIGLVLSPILMSQ--------AGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQ-ISKYELEYILREKQ  299 (521)
Q Consensus       229 ~~~~~~~~g~~~g~~l~~~l~~~--------~gw~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  299 (521)
                      +.+.+..+|.++++.++..+...        .+||..+.+..+..++.. +..+..||+|+.... .++++.+...++..
T Consensus       166 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~peSp~~L~~~~~~~~a~~~l~~~~  244 (491)
T 4gc0_A          166 FNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFL-MLLYTVPESPRWLMSRGKQEQAEGILRKIM  244 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHH-HHGGGSCCCHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhh-hhhhcCCCChHHHHHcCchhHHHHhHHHhc
Confidence            99999999999999988877543        246666666666555443 344556777653211 11111111111100


Q ss_pred             cc-------cccCCCCCCCCCCchHHHHHhcchHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCCCcccchhHhHHHHH
Q 009978          300 KP-------LLMGNKHKPATVIPPFRRLLSKMPTWSIIVA-NAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWS  371 (521)
Q Consensus       300 ~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  371 (521)
                      ..       .+..+...+..........++.+........ .+....+.+.+..+.+.+.++ .+.+...........++
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  323 (491)
T 4gc0_A          245 GNTLATQAVQEIKHSLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKT-LGASTDIALLQTIIVGV  323 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTHHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-SSCCHHHHHHHHHHHHH
T ss_pred             CCchhHHHHHHHHHHHHhhhhhhhHHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHh-cCCCccchhhHHHHHHH
Confidence            00       0000000000000111122333444333333 333334455566666666665 67777777777778888


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHH----hccchhHHHHHHHHH-HHHHHhhhhhhhHHH
Q 009978          372 VMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGL----TAAKSPVMASAWLTL-AIGMKSFSHSGFLVN  446 (521)
Q Consensus       372 ~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  446 (521)
                      ...++.++.+++.||+|||+       ..  ..+.....+.++.+    ......+..+...++ ..++.....+..+.+
T Consensus       324 ~~~~~~~~~~~l~dr~Grr~-------~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  394 (491)
T 4gc0_A          324 INLTFTVLAIMTVDKFGRKP-------LQ--IIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVL  394 (491)
T ss_dssp             HHHHHHHHHHHHHHHHCSHH-------HH--HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhcCcc-------hh--ccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            89999999999999999982       22  22222222222211    112222222222222 233333334556778


Q ss_pred             HHhhhc-cchhhHHhHHHHHHHHHHHHHHHHHHHHhhccc-----chHHHHHHHHHHHHHHHHHH-HHhccCcccccc
Q 009978          447 LQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVG-----SFQGFLLLTSLLYFLSALFY-IIFSTGERVNFD  517 (521)
Q Consensus       447 ~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  517 (521)
                      ..|+.| +.|+++.|+.+..+++++++++.+.+.+.+..+     .....|++.+++.+++.++. +++++.|.++.|
T Consensus       395 ~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLe  472 (491)
T 4gc0_A          395 LSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLE  472 (491)
T ss_dssp             HHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHH
T ss_pred             HHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHH
Confidence            889988 589999999999999999999988877655321     13456666666666666544 455655554443

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.98  E-value=3.9e-31  Score=261.20  Aligned_cols=372  Identities=15%  Similarity=0.082  Sum_probs=243.1

Q ss_pred             HHHhhhhhhhhhhhhhh-hhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHHHHHHH---hhhhhc
Q 009978          109 ALCNADRVVMSVAIVPL-SLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLAT---FLTPWA  184 (521)
Q Consensus       109 ~~~~~~~~~~~~~~~~~-~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~~~~---~l~~~~  184 (521)
                      +..........+.+|.+ .+++|.++.+.|++.+++.++..++++++|+++||+|||++++++..+.+++.   ....+.
T Consensus        17 ~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~   96 (417)
T 2cfq_A           17 FFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFG   96 (417)
T ss_dssp             HHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333344555666664 55689999999999999999999999999999999999999998887765432   111222


Q ss_pred             cccchH-HHHHHHHHHhhhhcchhhHHHHHHHhcCCc--hhhHHHHHHHHhhhhhhhHHHHHHHHHhhhccCchhHHHHH
Q 009978          185 ADTSLL-ALLAMRAVVGLAEGVALPAMNNMVARWFPQ--TERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIF  261 (521)
Q Consensus       185 ~~~~~~-~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gw~~~f~~~  261 (521)
                        +... .++..+++.|++.+...+.....+.++.++  ++++..++.......+|..++|.+++++.+ .+||+.|++.
T Consensus        97 --~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~  173 (417)
T 2cfq_A           97 --PLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLG  173 (417)
T ss_dssp             --HHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTT
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHH
Confidence              2111 234456666665555444444444444433  456777888888899999999999999987 5899999887


Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHHhhccccccCCCCCCCCCCchHHHHHhcchHHHHHHHHHHHHHHHH
Q 009978          262 GLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFF  341 (521)
Q Consensus       262 ~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  341 (521)
                      ++..++..+..+...||+++..+.   ++             ..++++++...+++++++++|.++...+..+.....+.
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~---~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (417)
T 2cfq_A          174 SGCALILAVLLFFAKTDAPSSATV---AN-------------AVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYD  237 (417)
T ss_dssp             TTTTTTHHHHSCSSCCCCSCSSCS---SS-------------SSSSCCCCCCHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCccccccccc---cc-------------ccccccccccHHHHHHHhcCCchhhHHHHHHHHHHHHH
Confidence            766544333332222332211100   00             00001111223456678899998887776666555666


Q ss_pred             HHHHHHHHHHHHHhCC---CcccchhHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHhc
Q 009978          342 VILSWMPIYFNFVYHI---DLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTA  418 (521)
Q Consensus       342 ~~~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  418 (521)
                      .+..++|.|+.+.++.   +....++..++..++.+++.++.+++.||+++|         ..+..+..+.++..+.+..
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~---------~~l~~~~~~~~~~~~~~~~  308 (417)
T 2cfq_A          238 VFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGK---------NALLLAGTIMSVRIIGSSF  308 (417)
T ss_dssp             HHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH---------HHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHH---------HHHHHHHHHHHHHHHHHHH
Confidence            6667788888775442   234456777777788888999999999999988         2233344444444444444


Q ss_pred             cchhHHHHHHHHHHHHHHhhhhhhhHHHHHhhhc-cchhhHHhH-HHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHH
Q 009978          419 AKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGI-SNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSL  496 (521)
Q Consensus       419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~-~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~  496 (521)
                      .++.+..++..++.........+....+..+..| +.||++.+. ++....+|++++|.+.|.+.|..| +...|.+.++
T Consensus       309 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g-~~~~f~~~~~  387 (417)
T 2cfq_A          309 ATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIG-FQGAYLVLGL  387 (417)
T ss_dssp             CCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSH-HHHHHHHHHH
T ss_pred             hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcC-cHHHHHHHHH
Confidence            4444433333222222223333344566677766 689999998 478888999999999999999877 8888888888


Q ss_pred             HHHHHHHHHHHhc
Q 009978          497 LYFLSALFYIIFS  509 (521)
Q Consensus       497 ~~~~~~~~~~~~~  509 (521)
                      +.+++.++.+...
T Consensus       388 ~~l~~~~~~~~~~  400 (417)
T 2cfq_A          388 VALGFTLISVFTL  400 (417)
T ss_dssp             HHHHHHHHHTTSS
T ss_pred             HHHHHHHHHHhhh
Confidence            8777776655433

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.96  E-value=6e-28  Score=246.15  Aligned_cols=167  Identities=17%  Similarity=0.182  Sum_probs=143.4

Q ss_pred             HHHHHhhhhhhhhhhhh-hhhhhhc------CCcchhhHHHHHHHHHHHHhhhhhHHHHhHh-cchHHHHHHHHHHHHHH
Q 009978          107 ALALCNADRVVMSVAIV-PLSLAHG------WSRSFSGIVQSSFLWGYLVSPIAGGTLVDYY-GGKIIMAWGVALWSLAT  178 (521)
Q Consensus       107 ~~~~~~~~~~~~~~~~~-~~~~~~~------~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~-Grr~~~~~~~~~~~~~~  178 (521)
                      ..++..+..+.....++ .+.+++|      .+..+.|++.+++.++..++++++|+++||+ |||+++.++.++.+++.
T Consensus        20 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~   99 (524)
T 2xut_A           20 SEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGH   99 (524)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence            33344444434444444 4667789      9999999999999999999999999999999 99999999999999999


Q ss_pred             hhhhhcccc-chHHHHHHHHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHH---HHhhhhhhhHHHHHHHHHhhhccCc
Q 009978          179 FLTPWAADT-SLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAI---AMGGFTSGNAIGLVLSPILMSQAGI  254 (521)
Q Consensus       179 ~l~~~~~~~-~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~---~~~~~~~g~~~g~~l~~~l~~~~gw  254 (521)
                      ++++++  + +++.+++.|++.|++.+...+...+++.|++|+++|+++.+.   .+.+.++|..+||.+++.+.+..||
T Consensus       100 ~~~~~~--~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~  177 (524)
T 2xut_A          100 AFLAIF--EHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGA  177 (524)
T ss_dssp             HHHHHT--SSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCH
T ss_pred             HHHHHh--cccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccH
Confidence            999888  7 999999999999999999999999999999999999776655   9999999999999999999998999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHh
Q 009978          255 FGPFVIFGLSGFLWVLVWLSA  275 (521)
Q Consensus       255 ~~~f~~~~~~~~i~~i~~~~~  275 (521)
                      |+.|++.+++.++..+..++.
T Consensus       178 ~~~f~~~~~~~~~~~~~~~~~  198 (524)
T 2xut_A          178 AVAFGIPGVLMFVATVFFWLG  198 (524)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHh
Confidence            999999888876665554443

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.64  E-value=3.5e-15  Score=148.57  Aligned_cols=172  Identities=11%  Similarity=-0.018  Sum_probs=144.0

Q ss_pred             HHHHHHHHhhhhhhhhhhhhhhhhh-hcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHh--cchHHHHHHHHHHH-HHHh
Q 009978          104 LALALALCNADRVVMSVAIVPLSLA-HGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYY--GGKIIMAWGVALWS-LATF  179 (521)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~--Grr~~~~~~~~~~~-~~~~  179 (521)
                      ..+..++............|.+.++ +|.++.+.+++.+...++..++.++.|++.||+  |||+.+.++..+.. ++.+
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~  336 (451)
T 1pw4_A          257 IAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATI  336 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH
Confidence            3344444444555566677777766 899999999999999999999999999999999  99999888877766 6666


Q ss_pred             hhhhccccchHHHHHHHHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhh-hhHHHHHHHHHhhhccCchhHH
Q 009978          180 LTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTS-GNAIGLVLSPILMSQAGIFGPF  258 (521)
Q Consensus       180 l~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~~g~~l~~~l~~~~gw~~~f  258 (521)
                      +..+....+.+.+.+..++.|++.+...+....++.|.+|+++|++++|+.+....+ |..++|.+.+.+.+..||+..|
T Consensus       337 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~  416 (451)
T 1pw4_A          337 VYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGF  416 (451)
T ss_dssp             HTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHH
T ss_pred             HHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHH
Confidence            666653236777888889999998888888999999999999999999999999999 9999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHh
Q 009978          259 VIFGLSGFLWVLVWLSA  275 (521)
Q Consensus       259 ~~~~~~~~i~~i~~~~~  275 (521)
                      ++.+++.++..++.+..
T Consensus       417 ~~~~~~~~~~~~~~~~~  433 (451)
T 1pw4_A          417 MVMIGGSILAVILLIVV  433 (451)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99988887766665554

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.53  E-value=1.8e-13  Score=134.55  Aligned_cols=147  Identities=14%  Similarity=0.093  Sum_probs=124.1

Q ss_pred             CcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhhhcchhhHHH
Q 009978          132 SRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMN  211 (521)
Q Consensus       132 s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~  211 (521)
                      +....++..++..++..++.++.|+++||+|||+++..+.++.+++.++.++.  ++.+.+++..++.+++.+...+...
T Consensus       257 ~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~  334 (417)
T 2cfq_A          257 GTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA--TSALEVVILKTLHMFEVPFLLVGCF  334 (417)
T ss_dssp             HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTC--CSHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35566888888888889999999999999999999999888888887777776  7778888888888888777777788


Q ss_pred             HHHHhcCCchhhHHHHHH-HHhhhhhhhHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHhcCCCC
Q 009978          212 NMVARWFPQTERARAVAI-AMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTP  280 (521)
Q Consensus       212 ~~i~~~~~~~~r~~~~~~-~~~~~~~g~~~g~~l~~~l~~~~gw~~~f~~~~~~~~i~~i~~~~~~~~~~  280 (521)
                      .++.|.+|++.|+.+.++ ++....+|..++|.+++++.+..|++..|.+.+++.++..++.+...+|++
T Consensus       335 ~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~  404 (417)
T 2cfq_A          335 KYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPG  404 (417)
T ss_dssp             HHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred             HHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence            999999999999999999 588888999999999999999888999999988887777666555555433

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.51  E-value=4.5e-13  Score=132.77  Aligned_cols=153  Identities=11%  Similarity=0.103  Sum_probs=126.0

Q ss_pred             Hhhhhhhhhhhhhhh-hhh-hcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHHHHHHHhhhhhccccc
Q 009978          111 CNADRVVMSVAIVPL-SLA-HGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTS  188 (521)
Q Consensus       111 ~~~~~~~~~~~~~~~-~~~-~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~l~~~~~~~~  188 (521)
                      ............|.+ .++ +|.+..+.+++.+...++..++.++.|+++||+|||+++.++.++.+++.++..+.  ++
T Consensus       270 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~--~~  347 (438)
T 3o7q_A          270 YVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFA--GG  347 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC--CH
T ss_pred             HHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHc--CC
Confidence            333334455555655 555 59999999999999999999999999999999999999999999998888888777  66


Q ss_pred             hHHHHHHHHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHhhhccC-chhHHHHHHHHHHH
Q 009978          189 LLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAG-IFGPFVIFGLSGFL  267 (521)
Q Consensus       189 ~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g-w~~~f~~~~~~~~i  267 (521)
                      .+.++. -++.|++.+...+...++..|.+|++ ++.+.++.. ...+|..++|.+.+++.+..| ++..|++.++..++
T Consensus       348 ~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~  424 (438)
T 3o7q_A          348 HVGLIA-LTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAV  424 (438)
T ss_dssp             HHHHHH-HHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHH
T ss_pred             cHHHHH-HHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence            655444 48889999999999999999999865 888888877 567999999999999999999 99999887665444


Q ss_pred             H
Q 009978          268 W  268 (521)
Q Consensus       268 ~  268 (521)
                      .
T Consensus       425 ~  425 (438)
T 3o7q_A          425 I  425 (438)
T ss_dssp             H
T ss_pred             H
Confidence            3

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.47  E-value=4.6e-12  Score=127.47  Aligned_cols=175  Identities=15%  Similarity=0.159  Sum_probs=138.6

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCCCcccchhHhHHHHHHHHHHHHHHHHHHHH-HHhcCCCcchh
Q 009978          324 MPTWSIIVANAMHSWGFFVILSWMPIYFNFV-----YHIDLRQASWFSAVPWSVMAFTGYLGGLLSDM-LIQRGTSVTLT  397 (521)
Q Consensus       324 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr-~~~~~~~~~~~  397 (521)
                      +.++...+..++..+.++.+..+++.|+++.     +|++..+.+++.+...++..++.++.|+++|| +|||       
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r-------   85 (491)
T 4aps_A           13 LGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGAR-------   85 (491)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHH-------
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccch-------
Confidence            4566777778888888888999999999998     89999999999999999999999999999999 8998       


Q ss_pred             HHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhhhhhhhHHHHHhhhc-cc--hhhHHhHHHHHHHHHHHHHH
Q 009978          398 RKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QY--SGVLHGISNTAGTFAAILGT  474 (521)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~g~~~g~~~~~~~~g~~~~~  474 (521)
                        ..+..+.++.++..+.....++.+..++..++.+...+...+....+..+..| ++  |+.+.++.+....+|..++|
T Consensus        86 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~  163 (491)
T 4aps_A           86 --PAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAP  163 (491)
T ss_dssp             --HHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHH
Confidence              34455555555555556666666655555555444455556666777777766 46  78888989999999999999


Q ss_pred             HHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHh
Q 009978          475 VGAGFFVELVGSFQGFLLLTSLLYFLSALFYIIF  508 (521)
Q Consensus       475 ~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  508 (521)
                      .+.+.+.+..| |+..|++.++..+++.+..+..
T Consensus       164 ~~~~~l~~~~g-~~~~f~~~~~~~~~~~~~~~~~  196 (491)
T 4aps_A          164 LIVGAAQEAAG-YHVAFSLAAIGMFIGLLVYYFG  196 (491)
T ss_dssp             HHHHHHHHHSC-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999887 9999998887777766665544

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.37  E-value=1.2e-11  Score=125.66  Aligned_cols=175  Identities=11%  Similarity=0.001  Sum_probs=132.1

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------CCcccchhHhHHHHHHHHHHHHHHHHHHHHH-HhcCCCcc
Q 009978          323 KMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYH------IDLRQASWFSAVPWSVMAFTGYLGGLLSDML-IQRGTSVT  395 (521)
Q Consensus       323 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g------~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~-~~~~~~~~  395 (521)
                      ++.++.+.+..++..+.++....+++.|+.+.+|      ++..+.+++.+...++..++.++.|++.||+ |+|     
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r-----   85 (524)
T 2xut_A           11 PRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKY-----   85 (524)
T ss_dssp             --CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSH-----
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch-----
Confidence            3566777788888888888899999999998889      9999999999999999999999999999999 988     


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHHhhhhhhhHHHHHhhhc-cchhhHHhH---HHHHHHHHH
Q 009978          396 LTRKILQSIGFIAPGIALIGLTAAK-SPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGI---SNTAGTFAA  470 (521)
Q Consensus       396 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~---~~~~~~~g~  470 (521)
                          ..+..+.++.++..+.....+ +.+..++..++.+...+...+....+..+..| ++|+++.+.   .+...++|.
T Consensus        86 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~  161 (524)
T 2xut_A           86 ----NTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGS  161 (524)
T ss_dssp             ----HHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHH
Confidence                233444444444444444444 55555444444444445555666677777766 577765555   889999999


Q ss_pred             HHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHH
Q 009978          471 ILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYII  507 (521)
Q Consensus       471 ~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  507 (521)
                      .++|.+.+.+.+..| |+..|.+.+++.+++.+.++.
T Consensus       162 ~~g~~~~~~l~~~~g-~~~~f~~~~~~~~~~~~~~~~  197 (524)
T 2xut_A          162 FFASLSMPLLLKNFG-AAVAFGIPGVLMFVATVFFWL  197 (524)
T ss_dssp             HHHHHTSTHHHHTSC-HHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHhcccc-HHHHHHHHHHHHHHHHHHHHH
Confidence            999999999998877 899998888877766665544

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.29  E-value=1.1e-11  Score=120.05  Aligned_cols=166  Identities=8%  Similarity=-0.018  Sum_probs=122.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHH
Q 009978          327 WSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGF  406 (521)
Q Consensus       327 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~  406 (521)
                      +.+.+..++.......+...+|.+.++ +|.++.+.++..+...++..++.++.|++.||+|||+..         ..+.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~---------~~~~   72 (375)
T 2gfp_A            3 LMLVLLVAVGQMAQTIYIPAIADMARD-LNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVI---------LVGM   72 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTT-SSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCC---------HHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhH---------HHHH
Confidence            344555666666677777778877666 899999999999999999999999999999999998532         2333


Q ss_pred             HHHHHHHHHHhccchhHHHHHHHHHHHHHHhhhhhhhHHHHHhhhc-cchhhHHhHHHHHHHHHHHHHHHHHHHHhhccc
Q 009978          407 IAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVG  485 (521)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g  485 (521)
                      ....+..+.....++.+..+...++.+...+...+....+..+..| ++|+++.++.+....+|..++|.+.+.+.+..|
T Consensus        73 ~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~  152 (375)
T 2gfp_A           73 SIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWN  152 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcc
Confidence            3333333333334455555544444444445556666677777766 699999999999999999999999999998877


Q ss_pred             chHHHHHHHHHHHHHHHH
Q 009978          486 SFQGFLLLTSLLYFLSAL  503 (521)
Q Consensus       486 ~~~~~~~~~~~~~~~~~~  503 (521)
                       |+..|.+.+++.++..+
T Consensus       153 -~~~~~~~~~~~~~~~~~  169 (375)
T 2gfp_A          153 -WRACYLFLLVLCAGVTF  169 (375)
T ss_dssp             -HHHHHHHHHHHHHHHHC
T ss_pred             -HHHHHHHHHHHHHHHHH
Confidence             88888887777666555

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.28  E-value=1.5e-10  Score=116.47  Aligned_cols=175  Identities=19%  Similarity=0.090  Sum_probs=128.3

Q ss_pred             HHHHHHhhhhhhhhhhhhhhhhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHHHHHHHhhhhhcc
Q 009978          106 LALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAA  185 (521)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~l~~~~~  185 (521)
                      ...+........+....+.+.+..+.+............+...++.++.+++.||+|||+.++.+.....++.+..+...
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~  363 (491)
T 4gc0_A          284 LSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAF  363 (491)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHH
Confidence            33333444444556667778888888888888888888889999999999999999999999998888877766544321


Q ss_pred             --c-cchHHHHH-HHHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHhhh------ccCch
Q 009978          186 --D-TSLLALLA-MRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMS------QAGIF  255 (521)
Q Consensus       186 --~-~~~~~l~~-~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~------~~gw~  255 (521)
                        . ++...++. .-+..+++ ....+....+.+|.+|.+.|+.+.|+......+|..+++.+.+.+.+      ..++.
T Consensus       364 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~  442 (491)
T 4gc0_A          364 YTQAPGIVALLSMLFYVAAFA-MSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNG  442 (491)
T ss_dssp             HTTCCHHHHHHHHHHHHHHHH-TTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTC
T ss_pred             hcccchHHHHHHHHHHHHHHH-hHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence              1 12222222 22222233 23456778899999999999999999999999999998887766543      34677


Q ss_pred             hHHHHHHHHHHHHHHHHHHhcCCCCC
Q 009978          256 GPFVIFGLSGFLWVLVWLSATSSTPD  281 (521)
Q Consensus       256 ~~f~~~~~~~~i~~i~~~~~~~~~~~  281 (521)
                      ..|++.++++++..+..+++.||++.
T Consensus       443 ~~~~i~~~~~~~~~i~~~~~~PETkg  468 (491)
T 4gc0_A          443 FSYWIYGCMGVLAALFMWKFVPETKG  468 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCCCCTT
T ss_pred             HHHHHHHHHHHHHHHHHHheecCCCC
Confidence            78899999888888888888887754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	521
d1pw4a_	447	f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es	7e-23
d1pv7a_	417	f.38.1.2 (A:) Lactose permease {Escherichia coli [	7e-08

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

 Score = 99.0 bits (245), Expect = 7e-23
 Identities = 72/421 (17%), Positives = 147/421 (34%), Gaps = 11/421 (2%)

Query: 97  RVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGT 156
           R ++   +    A     R   ++A+ P  +  G+SR   G   S     Y  S    G+
Sbjct: 23  RWQIFLGIFFGYAAYYLVRKNFALAM-PYLVEQGFSRGDLGFALSGISIAYGFSKFIMGS 81

Query: 157 LVDYYGGKIIMAWGVALWSLATFLTPW--AADTSLLALLAMRAVVGLAEGVALPAMNNMV 214
           + D    ++ +  G+ L +       +   A +S+  +  +  + G  +G+  P     +
Sbjct: 82  VSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTM 141

Query: 215 ARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLS 274
             W+ Q ER   V++       G  I  +L  + M+    +   +      F  +LV L 
Sbjct: 142 VHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMP--AFCAILVALF 199

Query: 275 ATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANA 334
           A +   D         +E    +         + +        + +L     W I +AN 
Sbjct: 200 AFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANV 259

Query: 335 MHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSV 394
                 + IL W P Y   V H  L ++SW   +          L G +SD + +     
Sbjct: 260 FVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGA 319

Query: 395 TLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-Q 453
           T     +  +  +     +  +  A +P +    + +   +         ++  E+AP +
Sbjct: 320 T----GVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKK 375

Query: 454 YSGVLHGISNTAGTF-AAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYIIFSTGE 512
            +G   G +   G    ++  +   G+ V+  G   GF+++         L  ++    +
Sbjct: 376 AAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEK 435

Query: 513 R 513
           R
Sbjct: 436 R 436

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

 Score = 52.5 bits (124), Expect = 7e-08
 Identities = 42/395 (10%), Positives = 94/395 (23%), Gaps = 19/395 (4%)

Query: 116 VVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWS 175
                  + L   +  S+S +GI+ ++     L+     G L D  G +  + W +    
Sbjct: 25  AYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGML 84

Query: 176 LATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFT 235
           +            LL    +   +     +         A      + +R      G   
Sbjct: 85  VMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRAR 144

Query: 236 SGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYIL 295
               +G  L   ++          +F L     +++ +    +  D              
Sbjct: 145 MFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTDA------------- 191

Query: 296 REKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVY 355
                P      +        F   L+        +               +       +
Sbjct: 192 -----PSSATVANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANF 246

Query: 356 HIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIG 415
                         +  +   G L             +    +  L   G I     +  
Sbjct: 247 FTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGS 306

Query: 416 LTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGI-SNTAGTFAAILGT 474
             A  +  +          +       F     +   ++S  ++ +        A I  +
Sbjct: 307 SFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMS 366

Query: 475 VGAGFFVELVGSFQGFLLLTSLLYFLSALFYIIFS 509
           V AG   E +G    +L+L  +    + +     S
Sbjct: 367 VLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLS 401

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	521
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	100.0
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.97
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.62
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.51

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.7e-40  Score=329.57  Aligned_cols=405  Identities=17%  Similarity=0.205  Sum_probs=305.4

Q ss_pred             ccchhHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHH
Q 009978           93 ITSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVA  172 (521)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~  172 (521)
                      .++++|.++..++++++..++++..++...|.+. |+|+|.+|+|++.+++.+++.++++++|+++||+|||+++.++.+
T Consensus        19 ~~~~~w~i~~~~~~~~~~~~~~~~~~~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~   97 (447)
T d1pw4a_          19 YRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLI   97 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHH
Confidence            4566788888888889999999888998888775 589999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhhcc--ccchHHHHHHHHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhhhhHHHHHHHHHhhh
Q 009978          173 LWSLATFLTPWAA--DTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMS  250 (521)
Q Consensus       173 ~~~~~~~l~~~~~--~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~  250 (521)
                      +.+++.++++++.  .++++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|..+++.+++.+..
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~  177 (447)
T d1pw4a_          98 LAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMA  177 (447)
T ss_dssp             HHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHH
T ss_pred             HHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhh
Confidence            9999988887662  14778899999999999999999999999999999999999999999999999999999988776


Q ss_pred             c-cCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHHhhccccccCCCCCCCCCCchHHHHHhcchHHHH
Q 009978          251 Q-AGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSI  329 (521)
Q Consensus       251 ~-~gw~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (521)
                      . .+||+.|++.+++.++..++.+...++.|+.......++.+....+..   ....+++........+..+++|.++..
T Consensus       178 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (447)
T d1pw4a_         178 WFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDY---NEKAEQELTAKQIFMQYVLPNKLLWYI  254 (447)
T ss_dssp             HTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC----------------CCTHHHHHHTSSCHHHHHH
T ss_pred             hhhcccccchhhhhhHHHHHHHHHHhcccchhhcccchhhhhhhhcccch---hhccccccchhhHHHHHHHcCchHHHH
Confidence            5 479999999999888877777777777665543222211110000000   001111222233445677888999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHH
Q 009978          330 IVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAP  409 (521)
Q Consensus       330 ~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~  409 (521)
                      ....++.....+....+.|.|+.+.++++..+.+.......++.+++.++.|++.||+++++.      ...........
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~------~~~~~~~~~~~  328 (447)
T d1pw4a_         255 AIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNR------GATGVFFMTLV  328 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCH------HHHHHHHHHHH
T ss_pred             HHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhcccccc------ccccchhHHHH
Confidence            999999989999999999999999889999999999999999999999999999999987732      11222222222


Q ss_pred             HHHHHHHh--ccchhHHHHHHHHHHHHHHhhhhhhhHHHHHhhhc-cchhhHHhHHHHHHHH-HHHHHHHHHHHHhhccc
Q 009978          410 GIALIGLT--AAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTF-AAILGTVGAGFFVELVG  485 (521)
Q Consensus       410 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~-g~~~~~~~~g~l~~~~g  485 (521)
                      ........  ...+.+......++.........+.......+..| +.+|++.|+.+...++ |.+++|.+.|++.|..|
T Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g  408 (447)
T d1pw4a_         329 TIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG  408 (447)
T ss_dssp             HHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred             HHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            22222222  22334433333333333333444455566667666 5899999999998887 45678999999999998


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHh
Q 009978          486 SFQGFLLLTSLLYFLSALFYIIF  508 (521)
Q Consensus       486 ~~~~~~~~~~~~~~~~~~~~~~~  508 (521)
                       +...|++.+++.+++.++...+
T Consensus       409 -~~~~~~~~~~~~~~~~~~~~~~  430 (447)
T d1pw4a_         409 -WDGGFMVMIGGSILAVILLIVV  430 (447)
T ss_dssp             -SHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -hHHHHHHHHHHHHHHHHHHHHH
Confidence             7777777776666665554443

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=9.6e-28  Score=233.79  Aligned_cols=381  Identities=15%  Similarity=0.062  Sum_probs=258.3

Q ss_pred             HHHHHHHHHHhhhhhhhhhhhhh-hhhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHHHHHHHhh
Q 009978          102 SMLALALALCNADRVVMSVAIVP-LSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFL  180 (521)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~l  180 (521)
                      +.+.+.+++..+......+.+|. +.+++|+|++++|++.+++.++..++++++|+++||+||||+++++..+..++..+
T Consensus        10 ~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~   89 (417)
T d1pv7a_          10 WMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAP   89 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH
Confidence            33444555556666677777776 56678999999999999999999999999999999999999999999888888877


Q ss_pred             hhhccccchHH----HHHHHHHHhhhhcchhhHHHHHHHhcCCc--hhhHHHHHHHHhhhhhhhHHHHHHHHHhhhccCc
Q 009978          181 TPWAADTSLLA----LLAMRAVVGLAEGVALPAMNNMVARWFPQ--TERARAVAIAMGGFTSGNAIGLVLSPILMSQAGI  254 (521)
Q Consensus       181 ~~~~~~~~~~~----l~~~r~l~G~g~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gw  254 (521)
                      ..+.  .+...    .++.+.+.+.+.+...........+..++  +++.+..+........+..+++.+++.+.+. +|
T Consensus        90 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~  166 (417)
T d1pv7a_          90 FFIF--IFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTI-NN  166 (417)
T ss_dssp             HHHH--THHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHH-CH
T ss_pred             HHHh--hhhhhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhccccccccccccccccc-cc
Confidence            7766  44333    34556666666555555544444444432  3445677788888889999999999998765 56


Q ss_pred             hhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHHhhccccccCCCCCCCCCCchHHHHHhcchHHHHHHHHH
Q 009978          255 FGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANA  334 (521)
Q Consensus       255 ~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  334 (521)
                      +..+........+..++..+..++.++..+..+++                ++.++........+.++++..+.......
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (417)
T d1pv7a_         167 QFVFWLGSGCALILAVLLFFAKTDAPSSATVANAV----------------GANHSAFSLKLALELFRQPKLWFLSLYVI  230 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSSCCCSCSSSCSSHHH----------------HSCCCCCCHHHHHHHTTSSHHHHHHHHHH
T ss_pred             cccccchhhHHHHHHHHHHHHhcccccchhhhhhh----------------hhhcccccccccccccccccccchhhhhH
Confidence            66666666666665555666555555443322111                11122233334455566666665555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHH---hCCCcccchhHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHH
Q 009978          335 MHSWGFFVILSWMPIYFNFV---YHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGI  411 (521)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~  411 (521)
                      .............+.+....   .+.+....+.......++..++..+.+++.||.+++         .....+..+.++
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~---------~~~~~~~~~~~~  301 (417)
T d1pv7a_         231 GVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGK---------NALLLAGTIMSV  301 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHH---------HHHHHHHHHHHH
T ss_pred             HHHHHHHhhhccccccccccccccccchhhhcccccccccccccchhhhhhhhcccccc---------cchhhhHHHHHH
Confidence            54444444444444333321   233445566677777888888999999999999988         344555555666


Q ss_pred             HHHHHhccchhHHHHHHHHHHHHHHhhhhhhhHHHHHhhhc-cchhhHHhHHH-HHHHHHHHHHHHHHHHHhhcccchHH
Q 009978          412 ALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISN-TAGTFAAILGTVGAGFFVELVGSFQG  489 (521)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~-~~~~~g~~~~~~~~g~l~~~~g~~~~  489 (521)
                      ..+.+...++.+..++..++.....+...+....+..+..| +.|+++.|+.. ....+|..++|.+.|++.|..| +..
T Consensus       302 ~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g-~~~  380 (417)
T d1pv7a_         302 RIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIG-FQG  380 (417)
T ss_dssp             HHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHC-HHH
T ss_pred             hhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-HHH
Confidence            66666666666666555555555555555666666677666 68999999865 5567999999999999999998 888


Q ss_pred             HHHHHHHHHHHHHHHHHHhccC
Q 009978          490 FLLLTSLLYFLSALFYIIFSTG  511 (521)
Q Consensus       490 ~~~~~~~~~~~~~~~~~~~~~~  511 (521)
                      .|++.+++.+++.++..+..++
T Consensus       381 ~~~~~~~~~~~~~~~~~~~l~~  402 (417)
T d1pv7a_         381 AYLVLGLVALGFTLISVFTLSG  402 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHHHHHHHhhcC
Confidence            8888887777766665554443

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.62  E-value=2.7e-15  Score=144.55  Aligned_cols=160  Identities=13%  Similarity=0.077  Sum_probs=139.7

Q ss_pred             hhhhhhhhhhhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHHHHHHHHHHhhhhhccccchHHHHHHH
Q 009978          117 VMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMR  196 (521)
Q Consensus       117 ~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~r  196 (521)
                      ......+...++.+.+....+...+...++..++..+.+++.||+|+|+.+.++.++.+++.++..+.  ++.+.+++..
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~  319 (417)
T d1pv7a_         242 QFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA--TSALEVVILK  319 (417)
T ss_dssp             HHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTC--CCHHHHHHHH
T ss_pred             cccccccccccccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccc--cccchhhHHH
Confidence            33344444555566777888899999999999999999999999999999999999999999999888  8999999999


Q ss_pred             HHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHH-HhhhhhhhHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHh
Q 009978          197 AVVGLAEGVALPAMNNMVARWFPQTERARAVAIA-MGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSA  275 (521)
Q Consensus       197 ~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~-~~~~~~g~~~g~~l~~~l~~~~gw~~~f~~~~~~~~i~~i~~~~~  275 (521)
                      ++.|++.+...+...+++.|.+|+++|+++.++. +....+|..++|.++|++.+.+||+..|++.+++.++..++..+.
T Consensus       320 ~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  399 (417)
T d1pv7a_         320 TLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFT  399 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999985 566779999999999999999999999999998888777766665


Q ss_pred             cCC
Q 009978          276 TSS  278 (521)
Q Consensus       276 ~~~  278 (521)
                      .++
T Consensus       400 l~~  402 (417)
T d1pv7a_         400 LSG  402 (417)
T ss_dssp             SCC
T ss_pred             hcC
Confidence            543

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.51  E-value=2.1e-13  Score=133.01  Aligned_cols=159  Identities=12%  Similarity=-0.018  Sum_probs=123.0

Q ss_pred             hhhhhhhh-hhhhhcCCcchhhHHHHHHHHHHHHhhhhhHHHHhHhcchHHHHHH---HHHHHHHHhhhhhccccchHHH
Q 009978          117 VMSVAIVP-LSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWG---VALWSLATFLTPWAADTSLLAL  192 (521)
Q Consensus       117 ~~~~~~~~-~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~---~~~~~~~~~l~~~~~~~~~~~l  192 (521)
                      ......|. +.+.++.+..+.++..+...++..++.++.|++.||++||+.....   ..+..++.++.......+.+..
T Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (447)
T d1pw4a_         267 GILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVD  346 (447)
T ss_dssp             HHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHH
T ss_pred             cchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhcccccHHHH
Confidence            33344444 5566899999999999999999999999999999999986543332   2222333333333333577788


Q ss_pred             HHHHHHHhhhhcchhhHHHHHHHhcCCchhhHHHHHHHHhhhhh-hhHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHH
Q 009978          193 LAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTS-GNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLV  271 (521)
Q Consensus       193 ~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~~g~~l~~~l~~~~gw~~~f~~~~~~~~i~~i~  271 (521)
                      ++.-++.|++.+...+....+..|.+|+++|+++.|+.+....+ |.+++|.+.+++.+.+||+..|++.++..++..++
T Consensus       347 ~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~  426 (447)
T d1pw4a_         347 MICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVIL  426 (447)
T ss_dssp             HHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHH
Confidence            88888899998888889999999999999999999999887776 56778999999999999999999888777766555


Q ss_pred             HHHh
Q 009978          272 WLSA  275 (521)
Q Consensus       272 ~~~~  275 (521)
                      ...+
T Consensus       427 ~~~~  430 (447)
T d1pw4a_         427 LIVV  430 (447)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5444