Citrus Sinensis ID: 009986

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-
MTKKRKNNGSADEDRHVKSVKVVEQSSPSPPRLGFENPLLPLANTYDDDDEEEEYGGRGDSGAKVGQNGRTGEDDDEDKDEDEDDLANGYGQGQRSRLVEVRRDCPYLDTVNRQVLDFDFEKFCSVSLSNLNVYACLVCGKYYQGRGQKSHAYTHSLEAGHHVYINLRTEKVYCLPDGYEINDPSLEDIRHVGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENYRHCKSPLVHRFGDLTRKIWHARNFKGQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDLRNTKKNTSIIYECFQGELEVVKEIPKNTISGNDQNTEKGSDGGDDHDNITTETSRMPFLMLGLDLPPPPLFKDVMEKNIIPQVPLFNILKKFDGETVTEVVRPHVARMRYRVTRLPKYMILHMRRFTKNNFFVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLRSKYDLIANIVHDGKPEGGFYRVFVQRKSEELWYEMQDLHVSETLPQMVALSETYMQIYEQQQ
ccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccEEEccccccccccccccccccEEEEcccccEEEccccccccccccccccccccccccccHHHHHHHHHHcccHHHHHHHcccccccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccEEEEEEccccccccccccEEEccccccccccEEEEEEEccccccccccccccccccccccccccccccHHHccccccccccccccccccEEEEEccccccEEEEEEccccccccccccccEEEEccccccccccccccccccccccccccEEEEEEEEEEccccccEEEEEEEEcccccEEEEEccEEEEEccccccccccEEEEEEEEc
cccEEEccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHcccccHHHEEEEEcccccEEEEEEEccEEccccccccEEEEEEccccEEEEEEcccEEEEcccccEEEcccHHHcccccccccccccHHHHHHHHHHccHHHHHHHHHccccccccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHcccccEEcccccHHHHHHHHHHHHHHHHccccccccHHHHHHHccccccccEEHHHcccccccEEEEEEccccccccccEEEcccEEEEcccccccccccccccccccccccHccHHHHcccccccccccccccEEEEEEEccccEEEEEEEEEccccEEEEcccEEEEccccccccHHHcccccccccccccEEEEEEEEEEEcccccccEEEEEEEcccccEEEEEcccEEccccHHHccHcHHEEHHHHccc
mtkkrknngsadedrhvKSVKVVeqsspspprlgfenpllplantyddddeeeeyggrgdsgakvgqngrtgedddedkdededdlangygqgqrsrlvevrrdcpyldtvnrqvldFDFEKFCSvslsnlnvYACLVcgkyyqgrgqkshaythsleAGHHVYINLrtekvyclpdgyeindpsledirhvglnniketdfvNVTIQSLmrvtplrnfflipenyrhcksplvhrfgdLTRKIWHArnfkgqvspHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDLRNTKKNTSIIYECFQGELEvvkeipkntisgndqntekgsdggddhdnittetsrmpflmlgldlpppplfkdvmekniipqvplfnilkkfdgetvteVVRPHVARMRYRVTRLPKYMILHMRRFtknnffveknptlvnfpvknlelkdyiplptpkeneklrsKYDLIANIVhdgkpeggFYRVFVQRKSEELWYEMQDLHVSETLPQMVALSETYMQIYEQQQ
mtkkrknngsadedrhvksvkvveqsspspprlgfenpllpLANTYDDDDEEEEyggrgdsgakvgqngrtgedddedkdededdlangygqgqrsrlvevrrdcPYLDTVNRQVLDFDFEKFCSVSLSNLNVYACLVCGKYYQGRGQKSHAYTHSLEAGHHVYINLRTEKVYCLPDGYEINDPSLEDIRHVGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENYRHCKSPLVHRFGDLTRKIWHARNFKGQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDLRNTKKNTSIIYECFQGELEVVKeipkntisgndqntekgsdggddhDNITTETSRMPFLMLGLDLPPPPLFKDVMEKNIIPQVPLfnilkkfdgetvtevvrphvarmryrvtrlpkymILHMRRFTKnnffveknptlvnfpvknlelkdYIPLPTPKENEKLRSKYDLIANIvhdgkpeggFYRVFVQRKSEELWYEMQDLHVSETLPQMVALSETYMQIYEQQQ
MTKKRKNNGSADEDRHVKSVKVVEQSSPSPPRLGFENPLLPLANTYddddeeeeYGGRGDSGAKVGQNGRTGedddedkdededdLANGYGQGQRSRLVEVRRDCPYLDTVNRQVLDFDFEKFCSVSLSNLNVYACLVCGKYYQGRGQKSHAYTHSLEAGHHVYINLRTEKVYCLPDGYEINDPSLEDIRHVGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENYRHCKSPLVHRFGDLTRKIWHARNFKGQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDLRNTKKNTSIIYECFQGELEVVKEIPKNTISGNDQNTEKGSDGGDDHDNITTETSRmpflmlgldlpppplfKDVMEKNIIPQVPLFNILKKFDGETVTEVVRPHVARMRYRVTRLPKYMILHMRRFTKNNFFVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLRSKYDLIANIVHDGKPEGGFYRVFVQRKSEELWYEMQDLHVSETLPQMVALSETYMQIYEQQQ
************************************************************************************************RLVEVRRDCPYLDTVNRQVLDFDFEKFCSVSLSNLNVYACLVCGKYYQG******************YINLRTEKVYCLPDGYEINDPSLEDIRHVGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENYRHCKSPLVHRFGDLTRKIWHARNFKGQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDLRNTKKNTSIIYECFQGELEVVKEI********************************PFLMLGLDLPPPPLFKDVMEKNIIPQVPLFNILKKFDGETVTEVVRPHVARMRYRVTRLPKYMILHMRRFTKNNFFVEKNPTLVNFPVKNLELKDYIPLPT*****KLRSKYDLIANIVHDGKPEGGFYRVFVQRKSEELWYEMQDLHVSETLPQMVALSETYMQI*****
***********************************************************************************************************LDTVNRQVLDFDFEKFCSVSLSNLNVYACLVCGKYYQGRGQKSHAYTHSLEAGHHVYINLRTEKVYCLPDGYEINDPSLEDIRHVGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENY***KSPLVHRFGDLTRKIWHARNFKGQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDL******************EVVKEIPKNTISGNDQNTEKGSDGGDDHDNITTETSRMPFLMLGLDLP**********KNIIPQVPLFNILKKFDGETVTEVVRPHVARMRYRVTRLPKYMILHMRRFTKNNFFVEKNPTLVNFPVKNLELKDYIP**********RSKYDLIANIVHDGKPEGGFYRVFVQRKSEELWYEMQDLHVSETLPQMVALSETYMQIYEQQQ
******************************PRLGFENPLLPLANTYDD**************************************ANGYGQGQRSRLVEVRRDCPYLDTVNRQVLDFDFEKFCSVSLSNLNVYACLVCGKYYQGRGQKSHAYTHSLEAGHHVYINLRTEKVYCLPDGYEINDPSLEDIRHVGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENYRHCKSPLVHRFGDLTRKIWHARNFKGQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDLRNTKKNTSIIYECFQGELEVVKEIPKNTISGNDQNTEKGSDGGDDHDNITTETSRMPFLMLGLDLPPPPLFKDVMEKNIIPQVPLFNILKKFDGETVTEVVRPHVARMRYRVTRLPKYMILHMRRFTKNNFFVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLRSKYDLIANIVHDGKPEGGFYRVFVQRKSEELWYEMQDLHVSETLPQMVALSETYMQIYEQQQ
*********************************GFENPLLPLAN**********************************************************RDCPYLDTVNRQVLDFDFEKFCSVSLSNLNVYACLVCGKYYQGRGQKSHAYTHSLEAGHHVYINLRTEKVYCLPDGYEINDPSLEDIRHVGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENYRHCKSPLVHRFGDLTRKIWHARNFKGQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDLRNTKKNTSIIYECFQGELEVVKEIPKNTISGNDQNTEKGSDGGDDHDNITTETSRMPFLMLGLDLPPPPLFKDVMEKNIIPQVPLFNILKKFDGETVTEVVRPHVARMRYRVTRLPKYMILHMRRFTKNNFFVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLRSKYDLIANIVHDGKPEGGFYRVFVQRKSEELWYEMQDLHVSETLPQMVALSETYMQIYEQQ*
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MTKKRKNNGSADEDRHVKSVKVVEQSSPSPPRLGFENPLLPLANTYDDDDEEEEYGGRGDSGAKVGQNGRTGEDDDEDKDEDEDDLANGYGQGQRSRLVEVRRDCPYLDTVNRQVLDFDFEKFCSVSLSNLNVYACLVCGKYYQGRGQKSHAYTHSLEAGHHVYINLRTEKVYCLPDGYEINDPSLEDIRHVGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENYRHCKSPLVHRFGDLTRKIWHARNFKGQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDLRNTKKNTSIIYECFQGELEVVKEIPKNTISGNDQNTEKGSDGGDDHDNITTETSRMPFLMLGLDLPPPPLFKDVMEKNIIPQVPLFNILKKFDGETVTEVVRPHVARMRYRVTRLPKYMILHMRRFTKNNFFVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLRSKYDLIANIVHDGKPEGGFYRVFVQRKSEELWYEMQDLHVSETLPQMVALSETYMQIYEQQQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query521 2.2.26 [Sep-21-2011]
Q3TIX9564 U4/U6.U5 tri-snRNP-associ yes no 0.840 0.776 0.464 1e-117
Q53GS9565 U4/U6.U5 tri-snRNP-associ yes no 0.840 0.775 0.464 1e-117
Q5R761565 U4/U6.U5 tri-snRNP-associ yes no 0.840 0.775 0.464 1e-117
Q9USR2502 Probable mRNA-splicing pr yes no 0.767 0.796 0.405 3e-93
P43589448 Pre-mRNA-splicing factor yes no 0.706 0.821 0.279 5e-41
Q91W36520 Ubiquitin carboxyl-termin no no 0.763 0.765 0.242 5e-17
Q9Y6I4520 Ubiquitin carboxyl-termin no no 0.763 0.765 0.242 6e-17
O57429357 Ubiquitin carboxyl-termin no no 0.589 0.859 0.242 9e-15
O75604605 Ubiquitin carboxyl-termin no no 0.593 0.510 0.237 2e-14
Q6P8X6390 Putative ubiquitin carbox no no 0.552 0.738 0.25 3e-14
>sp|Q3TIX9|SNUT2_MOUSE U4/U6.U5 tri-snRNP-associated protein 2 OS=Mus musculus GN=Usp39 PE=2 SV=2 Back     alignment and function desciption
 Score =  424 bits (1089), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 230/495 (46%), Positives = 308/495 (62%), Gaps = 57/495 (11%)

Query: 70  RTGEDDDEDKDEDEDDLANGYGQGQRSRLVEVRRDCPYLDTVNRQVLDFDFEKFCSVSLS 129
           R  E D++ + E E    NG    +  R     R CPYLDT+NR VLDFDFEK CS+SLS
Sbjct: 73  REREADEDSEPEREVRAKNGRVDSEDRR----SRHCPYLDTINRSVLDFDFEKLCSISLS 128

Query: 130 NLNVYACLVCGKYYQGRGQKSHAYTHSLEAGHHVYINLRTEKVYCLPDGYEINDPSLEDI 189
           ++N YACLVCGKY+QGRG KSHAY HS++  HHV++NL T K YCLPD YEI D SLEDI
Sbjct: 129 HINAYACLVCGKYFQGRGLKSHAYIHSVQFSHHVFLNLHTLKFYCLPDNYEIIDSSLEDI 188

Query: 190 RHV---------------------------------GLNNIKETDFVNVTIQSLMRVTPL 216
            +V                                 GLNNIK  D+ N  +Q+L  V PL
Sbjct: 189 TYVLKPTFTKQQIANLDKQAKLSRAYDGTTYLPGIVGLNNIKANDYANAVLQALSNVPPL 248

Query: 217 RNFFLIPENYRHCKSP-------LVHRFGDLTRKIWHARNFKGQVSPHEFLQAVMKASKK 269
           RN+FL  +NY++ K P       LV RFG+L RK+W+ RNFK  VSPHE LQAV+  SKK
Sbjct: 249 RNYFLEEDNYKNIKRPPGDIMFLLVQRFGELMRKLWNPRNFKAHVSPHEMLQAVVLCSKK 308

Query: 270 RFRIGVQSNPVEFMSWLLNTLHSDL-RNTKKNTSIIYECFQGELEV-VKEIPKNTISGND 327
            F+I  Q + V+F+SW LN LHS L    KK  +I+ + FQG + +  K++P   +   +
Sbjct: 309 TFQITKQGDGVDFLSWFLNALHSALGGTKKKKKTIVNDVFQGSMRIFTKKLPHPDLPAEE 368

Query: 328 QNTEKGSDGGDDHDNITTETSRMPFLMLGLDLPPPPLFKDVMEKNIIPQVPLFNILKKFD 387
           +     +   D++     E++   F+ L LDLP  PL+KD  E+ IIPQVPLFNIL KF+
Sbjct: 369 KEQLLHN---DEYQETMVEST---FMYLTLDLPTAPLYKDEKEQLIIPQVPLFNILAKFN 422

Query: 388 GETVTE--VVRPHVARMRYRVTRLPKYMILHMRRFTKNNFFVEKNPTLVNFPVKNLELKD 445
           G T  E    + +  + R+++T+LP Y+I  ++RFTKNNFFVEKNPT+VNFP+ N++L++
Sbjct: 423 GITEKEYKTYKENFLK-RFQLTKLPPYLIFCIKRFTKNNFFVEKNPTIVNFPITNVDLRE 481

Query: 446 YIPLPTPKENEKLRSKYDLIANIVHDGKPEGGFYRVFVQRKSEELWYEMQDLHVSETLPQ 505
           Y+       ++   + YDLIANIVHDGKP  G YR+ V       WYE+QDL V++ LPQ
Sbjct: 482 YLSEEVQAVHKN--TTYDLIANIVHDGKPSEGSYRIHVLHHGTGKWYELQDLQVTDILPQ 539

Query: 506 MVALSETYMQIYEQQ 520
           M+ LSE Y+QI++++
Sbjct: 540 MITLSEAYIQIWKRR 554
May play a role in mRNA splicing. It is unsure if the protein really exhibits hydrolase activity. Could be a competitor of ubiquitin C-terminal hydrolases (UCHs).
Mus musculus (taxid: 10090)
>sp|Q53GS9|SNUT2_HUMAN U4/U6.U5 tri-snRNP-associated protein 2 OS=Homo sapiens GN=USP39 PE=1 SV=2 Back     alignment and function description
>sp|Q5R761|SNUT2_PONAB U4/U6.U5 tri-snRNP-associated protein 2 OS=Pongo abelii GN=USP39 PE=2 SV=1 Back     alignment and function description
>sp|Q9USR2|UBP10_SCHPO Probable mRNA-splicing protein ubp10 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ubp10 PE=3 SV=1 Back     alignment and function description
>sp|P43589|SAD1_YEAST Pre-mRNA-splicing factor SAD1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SAD1 PE=1 SV=1 Back     alignment and function description
>sp|Q91W36|UBP3_MOUSE Ubiquitin carboxyl-terminal hydrolase 3 OS=Mus musculus GN=Usp3 PE=2 SV=1 Back     alignment and function description
>sp|Q9Y6I4|UBP3_HUMAN Ubiquitin carboxyl-terminal hydrolase 3 OS=Homo sapiens GN=USP3 PE=1 SV=2 Back     alignment and function description
>sp|O57429|UBP2_CHICK Ubiquitin carboxyl-terminal hydrolase 2 OS=Gallus gallus GN=USP2 PE=2 SV=1 Back     alignment and function description
>sp|O75604|UBP2_HUMAN Ubiquitin carboxyl-terminal hydrolase 2 OS=Homo sapiens GN=USP2 PE=1 SV=2 Back     alignment and function description
>sp|Q6P8X6|UBP50_MOUSE Putative ubiquitin carboxyl-terminal hydrolase 50 OS=Mus musculus GN=Usp50 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query521
147862940566 hypothetical protein VITISV_019937 [Viti 0.994 0.915 0.743 0.0
356546089563 PREDICTED: U4/U6.U5 tri-snRNP-associated 0.921 0.852 0.772 0.0
356534252569 PREDICTED: U4/U6.U5 tri-snRNP-associated 0.909 0.833 0.753 0.0
255559080557 ubiquitin specific protease 39 and snrnp 0.988 0.924 0.724 0.0
449443550550 PREDICTED: U4/U6.U5 tri-snRNP-associated 0.980 0.929 0.733 0.0
449520261550 PREDICTED: U4/U6.U5 tri-snRNP-associated 0.980 0.929 0.732 0.0
357474209544 U4/U6.U5 tri-snRNP-associated protein [M 0.938 0.898 0.730 0.0
224089613557 predicted protein [Populus trichocarpa] 0.982 0.919 0.712 0.0
326495966553 predicted protein [Hordeum vulgare subsp 0.936 0.882 0.734 0.0
357110906546 PREDICTED: U4/U6.U5 tri-snRNP-associated 0.811 0.774 0.805 0.0
>gi|147862940|emb|CAN83206.1| hypothetical protein VITISV_019937 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  783 bits (2023), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 423/569 (74%), Positives = 454/569 (79%), Gaps = 51/569 (8%)

Query: 1   MTKKRKNNGSADEDRH---VKSVKVVEQSSPSPPRLGFENPLLPLANTYDDDDEEEEYGG 57
           M  KR++N   DE R    +K  K +++SSP P  L FEN L  LA+  DDDDE+EE   
Sbjct: 1   MKTKREDNSDEDEGREFPDLKRQKKLDESSPPPASLAFENALHTLASYDDDDDEKEEEEM 60

Query: 58  RGDSGAKVGQNGRTGEDDDEDKDEDEDDLANGY-------GQGQRSRLVEVRRDCPYLDT 110
           +  SG +  ++ R  E +     E+ DD  +          Q +RSRLVEVRRDCPYLDT
Sbjct: 61  KEASGLRGREDNRRAERNGHRDGEEYDDDDDDDDDPHQEANQVKRSRLVEVRRDCPYLDT 120

Query: 111 VNRQVLDFDFEKFCSVSLSNLNVYACLVCGKYYQGRGQKSHAYTHSLEAGHHVYINLRTE 170
           VNRQVLDFDFEKFCSVSLSNLNVYACLVCGKYYQGRGQKSHAYTHSLEAGHHVYINLRTE
Sbjct: 121 VNRQVLDFDFEKFCSVSLSNLNVYACLVCGKYYQGRGQKSHAYTHSLEAGHHVYINLRTE 180

Query: 171 KVYCLPDGYEINDPSLEDIRHV---------------------------------GLNNI 197
           KVYCLPDGYEINDPSL+DIRHV                                 GLNNI
Sbjct: 181 KVYCLPDGYEINDPSLDDIRHVLNPRFTREQVDQLDKNKQWSRALDGSDYLPGMVGLNNI 240

Query: 198 KETDFVNVTIQSLMRVTPLRNFFLIPENYRHCKSPLVHRFGDLTRKIWHARNFKGQVSPH 257
           KETDFVNVTIQSLMRVTPLRNFFLIPENYRHCKSPLVHRFG+LTRKIWHARNFKGQVSPH
Sbjct: 241 KETDFVNVTIQSLMRVTPLRNFFLIPENYRHCKSPLVHRFGELTRKIWHARNFKGQVSPH 300

Query: 258 EFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDLRNTKKNTSIIYECFQGELEVVKE 317
           EFLQAVMKASKKRFRIG QS+PVEFMSWLLNTLH DLR +KKN+SIIY CFQGELEVVKE
Sbjct: 301 EFLQAVMKASKKRFRIGAQSDPVEFMSWLLNTLHGDLRTSKKNSSIIYNCFQGELEVVKE 360

Query: 318 IPKNTI-----SGNDQNTEKGSDGGDDHDNITTETSRMPFLMLGLDLPPPPLFKDVMEKN 372
           IP         +G+DQN    +   D+H ++  ET RMPFLMLGLDLPPPPLFKDVMEKN
Sbjct: 361 IPNKGFFEKRENGDDQNK---ATTADEHADVILETCRMPFLMLGLDLPPPPLFKDVMEKN 417

Query: 373 IIPQVPLFNILKKFDGETVTEVVRPHVARMRYRVTRLPKYMILHMRRFTKNNFFVEKNPT 432
           IIPQVPLFNILKKFDGE VTEVVRP +ARMRYRVTRLP+Y+ILHMRRFTKNNFF+EKNPT
Sbjct: 418 IIPQVPLFNILKKFDGELVTEVVRPRIARMRYRVTRLPQYLILHMRRFTKNNFFIEKNPT 477

Query: 433 LVNFPVKNLELKDYIPLPTPKENEKLRSKYDLIANIVHDGKPEGGFYRVFVQRKSEELWY 492
           LVNFPVKNLELKDYIPLP PKENEKLRSKYDLIANIVHDGKP  GFYRVFVQRKSEELWY
Sbjct: 478 LVNFPVKNLELKDYIPLPAPKENEKLRSKYDLIANIVHDGKPGEGFYRVFVQRKSEELWY 537

Query: 493 EMQDLHVSETLPQMVALSETYMQIYEQQQ 521
           EMQDLHVSETLPQMVALSETYMQIYEQQQ
Sbjct: 538 EMQDLHVSETLPQMVALSETYMQIYEQQQ 566

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356546089|ref|XP_003541464.1| PREDICTED: U4/U6.U5 tri-snRNP-associated protein 2-like [Glycine max] Back     alignment and taxonomy information
>gi|356534252|ref|XP_003535671.1| PREDICTED: U4/U6.U5 tri-snRNP-associated protein 2-like [Glycine max] Back     alignment and taxonomy information
>gi|255559080|ref|XP_002520562.1| ubiquitin specific protease 39 and snrnp assembly factor, putative [Ricinus communis] gi|223540222|gb|EEF41795.1| ubiquitin specific protease 39 and snrnp assembly factor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449443550|ref|XP_004139540.1| PREDICTED: U4/U6.U5 tri-snRNP-associated protein 2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449520261|ref|XP_004167152.1| PREDICTED: U4/U6.U5 tri-snRNP-associated protein 2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|357474209|ref|XP_003607389.1| U4/U6.U5 tri-snRNP-associated protein [Medicago truncatula] gi|355508444|gb|AES89586.1| U4/U6.U5 tri-snRNP-associated protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|224089613|ref|XP_002308779.1| predicted protein [Populus trichocarpa] gi|222854755|gb|EEE92302.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|326495966|dbj|BAJ90605.1| predicted protein [Hordeum vulgare subsp. vulgare] Back     alignment and taxonomy information
>gi|357110906|ref|XP_003557256.1| PREDICTED: U4/U6.U5 tri-snRNP-associated protein 2-like [Brachypodium distachyon] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query521
TAIR|locus:4010713900541 AT4G22285 [Arabidopsis thalian 0.299 0.288 0.770 6.8e-186
TAIR|locus:2127490340 AT4G22410 [Arabidopsis thalian 0.249 0.382 0.846 1.2e-124
DICTYBASE|DDB_G0278929718 usp39 "putative ubiquitin carb 0.608 0.441 0.455 4.8e-114
ZFIN|ZDB-GENE-030131-966497 usp39 "ubiquitin specific pept 0.614 0.643 0.457 2.7e-111
UNIPROTKB|A6QQX8565 USP39 "Uncharacterized protein 0.614 0.566 0.444 3.9e-108
UNIPROTKB|E2QZF6561 USP39 "Uncharacterized protein 0.614 0.570 0.444 3.9e-108
UNIPROTKB|Q53GS9565 USP39 "U4/U6.U5 tri-snRNP-asso 0.614 0.566 0.444 3.9e-108
MGI|MGI:107622564 Usp39 "ubiquitin specific pept 0.614 0.567 0.444 3.9e-108
FB|FBgn0030969494 CG7288 [Drosophila melanogaste 0.289 0.305 0.483 3.9e-108
RGD|1308103564 Usp39 "ubiquitin specific pept 0.614 0.567 0.441 1e-107
TAIR|locus:4010713900 AT4G22285 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 642 (231.1 bits), Expect = 6.8e-186, Sum P(3) = 6.8e-186
 Identities = 121/157 (77%), Positives = 139/157 (88%)

Query:   366 KDVMEKNIIPQVPLFNILKKFDGETVTEVVRPHVARMRYRVTRLPKYMILHMRRFTKNNF 425
             KDVMEKNIIPQV LF++LKKFDGETVTEVVRP +ARMRYRV + P+Y++ HM RF KNNF
Sbjct:   384 KDVMEKNIIPQVALFDLLKKFDGETVTEVVRPKLARMRYRVIKSPRYLMFHMVRFKKNNF 443

Query:   426 FVEKNPTLVNFPVKNLELKDYIP-LPTPKENEKLRSKYDLIANIVHDGKPEGGFYRVFVQ 484
             F EKNPTLVNFPVK++EL+DYIP LP   E E + SKY+LIANIVHDGKPE G++RVFVQ
Sbjct:   444 FKEKNPTLVNFPVKDMELRDYIPSLPRAPEGENVCSKYNLIANIVHDGKPEDGYFRVFVQ 503

Query:   485 RKSEELWYEMQDLHVSETLPQMVALSETYMQIYEQQQ 521
             RKS+ELWYEMQDLHV+ETLPQMV LSE YMQIYEQ++
Sbjct:   504 RKSQELWYEMQDLHVAETLPQMVELSEAYMQIYEQEE 540
GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA
GO:0005622 "intracellular" evidence=IEA
GO:0005634 "nucleus" evidence=ISM
GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA
GO:0008270 "zinc ion binding" evidence=IEA
GO:0005829 "cytosol" evidence=RCA
TAIR|locus:2127490 AT4G22410 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0278929 usp39 "putative ubiquitin carboxyl-terminal hydrolase (UCH)" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-966 usp39 "ubiquitin specific peptidase 39" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|A6QQX8 USP39 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2QZF6 USP39 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q53GS9 USP39 "U4/U6.U5 tri-snRNP-associated protein 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:107622 Usp39 "ubiquitin specific peptidase 39" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
FB|FBgn0030969 CG7288 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
RGD|1308103 Usp39 "ubiquitin specific peptidase 39" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.19LOW CONFIDENCE prediction!
3rd Layer3.4.19.12LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query521
cd02669440 cd02669, Peptidase_C19M, A subfamily of Peptidase 0.0
cd02257255 cd02257, Peptidase_C19, Peptidase C19 contains ubi 3e-35
pfam00443313 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrol 9e-31
pfam0214863 pfam02148, zf-UBP, Zn-finger in ubiquitin-hydrolas 6e-24
smart0029050 smart00290, ZnF_UBP, Ubiquitin Carboxyl-terminal H 5e-18
cd02674230 cd02674, Peptidase_C19R, A subfamily of peptidase 2e-17
cd02661304 cd02661, Peptidase_C19E, A subfamily of Peptidase 1e-16
cd02660328 cd02660, Peptidase_C19D, A subfamily of Peptidase 2e-13
COG5560823 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Po 1e-11
COG5533415 COG5533, UBP5, Ubiquitin C-terminal hydrolase [Pos 4e-11
cd02657305 cd02657, Peptidase_C19A, A subfamily of Peptidase 5e-10
cd02663300 cd02663, Peptidase_C19G, A subfamily of Peptidase 8e-07
cd02667279 cd02667, Peptidase_C19K, A subfamily of Peptidase 2e-06
cd02659334 cd02659, peptidase_C19C, A subfamily of Peptidase 8e-05
COG5560 823 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Po 6e-04
cd02658311 cd02658, Peptidase_C19B, A subfamily of Peptidase 7e-04
pfam13423296 pfam13423, UCH_1, Ubiquitin carboxyl-terminal hydr 0.002
>gnl|CDD|239134 cd02669, Peptidase_C19M, A subfamily of Peptidase C19 Back     alignment and domain information 
 Score =  639 bits (1650), Expect = 0.0
 Identities = 250/451 (55%), Positives = 311/451 (68%), Gaps = 49/451 (10%)

Query: 106 PYLDTVNRQVLDFDFEKFCSVSLSNLNVYACLVCGKYYQGRGQKSHAYTHSLEAGHHVYI 165
           PYLDT+NR VLDFDFEK CSVSLSNLNVYACLVCGKY+QGRG+ SHAYTHSLE  HHV++
Sbjct: 1   PYLDTINRSVLDFDFEKVCSVSLSNLNVYACLVCGKYFQGRGKGSHAYTHSLEDNHHVFL 60

Query: 166 NLRTEKVYCLPDGYEINDPSLEDIRH---------------------------------V 192
           NL T K YCLPD YEI D SL+DI++                                 V
Sbjct: 61  NLETLKFYCLPDNYEIIDSSLDDIKYVLNPTYTKEQISDLDRDPKLSRDLDGKPYLPGFV 120

Query: 193 GLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENYR---HCKSPLVHRFGDLTRKIWHARN 249
           GLNNIK  D+ NV IQ+L  V P+RNFFL+ ENY      KS LV R  +L RKIW+ RN
Sbjct: 121 GLNNIKNNDYANVIIQALSHVKPIRNFFLLYENYENIKDRKSELVKRLSELIRKIWNPRN 180

Query: 250 FKGQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDL-RNTKKNTSIIYECF 308
           FKG VSPHE LQAV K SKK+F I  QS+PVEF+SWLLNTLH DL  + K N+SII++CF
Sbjct: 181 FKGHVSPHELLQAVSKVSKKKFSITEQSDPVEFLSWLLNTLHKDLGGSKKPNSSIIHDCF 240

Query: 309 QGELEVVKEIPKNTISGNDQNTEKGSDGGDDHDNITTETSRMPFLMLGLDLPPPPLFKDV 368
           QG++++  +  K          E+GS      D+   +TS  PFL+L LDLPPPPLFKD 
Sbjct: 241 QGKVQIETQKIKPHAE------EEGSKDKFFKDSRVKKTSVSPFLLLTLDLPPPPLFKDG 294

Query: 369 MEKNIIPQVPLFNILKKFDGETVTEVVRPHVARMRYRVTRLPKYMILHMRRFTKNNFFVE 428
            E+NIIPQVPL  +LKK+DG+T TE+        RY ++RLPKY+I H++RF+KNNFF E
Sbjct: 295 NEENIIPQVPLKQLLKKYDGKTETELKDS---LKRYLISRLPKYLIFHIKRFSKNNFFKE 351

Query: 429 KNPTLVNFPVKNLELKDYIPLPTPKENEKLRSKYDLIANIVHDGKP-EGGFYRVFVQRKS 487
           KNPT+VNFP+KNL+L DY+     K +  L +KY+L+ANIVH+G P E G +RV ++ KS
Sbjct: 352 KNPTIVNFPIKNLDLSDYV--HFDKPSLNLSTKYNLVANIVHEGTPQEDGTWRVQLRHKS 409

Query: 488 EELWYEMQDLHVSETLPQMVALSETYMQIYE 518
              W+E+QDL+V E LPQ++ LSE+Y+QI+E
Sbjct: 410 TNKWFEIQDLNVKEVLPQLIFLSESYIQIWE 440

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 440
>gnl|CDD|239072 cd02257, Peptidase_C19, Peptidase C19 contains ubiquitinyl hydrolases Back     alignment and domain information
>gnl|CDD|215922 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase Back     alignment and domain information
>gnl|CDD|216903 pfam02148, zf-UBP, Zn-finger in ubiquitin-hydrolases and other protein Back     alignment and domain information
>gnl|CDD|197632 smart00290, ZnF_UBP, Ubiquitin Carboxyl-terminal Hydrolase-like zinc finger Back     alignment and domain information
>gnl|CDD|239139 cd02674, Peptidase_C19R, A subfamily of peptidase C19 Back     alignment and domain information
>gnl|CDD|239126 cd02661, Peptidase_C19E, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239125 cd02660, Peptidase_C19D, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|227847 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|227820 COG5533, UBP5, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|239122 cd02657, Peptidase_C19A, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239128 cd02663, Peptidase_C19G, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239132 cd02667, Peptidase_C19K, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239124 cd02659, peptidase_C19C, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|227847 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|239123 cd02658, Peptidase_C19B, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|222118 pfam13423, UCH_1, Ubiquitin carboxyl-terminal hydrolase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 521
cd02669440 Peptidase_C19M A subfamily of Peptidase C19. Pepti 100.0
KOG2026442 consensus Spindle pole body protein - Sad1p [Cytos 100.0
KOG0944763 consensus Ubiquitin-specific protease UBP14 [Postt 100.0
cd02660328 Peptidase_C19D A subfamily of Peptidase C19. Pepti 100.0
cd02658311 Peptidase_C19B A subfamily of Peptidase C19. Pepti 100.0
cd02663300 Peptidase_C19G A subfamily of Peptidase C19. Pepti 100.0
cd02657305 Peptidase_C19A A subfamily of Peptidase C19. Pepti 100.0
COG5207749 UBP14 Isopeptidase T [Posttranslational modificati 100.0
cd02667279 Peptidase_C19K A subfamily of Peptidase C19. Pepti 100.0
KOG1865 545 consensus Ubiquitin carboxyl-terminal hydrolase [P 100.0
cd02668324 Peptidase_C19L A subfamily of Peptidase C19. Pepti 100.0
cd02671332 Peptidase_C19O A subfamily of Peptidase C19. Pepti 100.0
COG5560823 UBP12 Ubiquitin C-terminal hydrolase [Posttranslat 100.0
cd02664327 Peptidase_C19H A subfamily of Peptidase C19. Pepti 100.0
cd02661304 Peptidase_C19E A subfamily of Peptidase C19. Pepti 100.0
cd02659334 peptidase_C19C A subfamily of Peptidase C19. Pepti 100.0
KOG1873877 consensus Ubiquitin-specific protease [Posttransla 100.0
KOG1867492 consensus Ubiquitin-specific protease [Posttransla 100.0
cd02662240 Peptidase_C19F A subfamily of Peptidase C19. Pepti 100.0
COG5533415 UBP5 Ubiquitin C-terminal hydrolase [Posttranslati 100.0
PF00443269 UCH: Ubiquitin carboxyl-terminal hydrolase; InterP 100.0
cd02674230 Peptidase_C19R A subfamily of peptidase C19. Pepti 100.0
KOG1868653 consensus Ubiquitin C-terminal hydrolase [Posttran 100.0
cd02666343 Peptidase_C19J A subfamily of Peptidase C19. Pepti 100.0
cd02665228 Peptidase_C19I A subfamily of Peptidase C19. Pepti 100.0
cd02673245 Peptidase_C19Q A subfamily of Peptidase C19. Pepti 100.0
cd02257255 Peptidase_C19 Peptidase C19 contains ubiquitinyl h 100.0
KOG1870842 consensus Ubiquitin C-terminal hydrolase [Posttran 100.0
KOG1866 944 consensus Ubiquitin carboxyl-terminal hydrolase [P 100.0
COG5077 1089 Ubiquitin carboxyl-terminal hydrolase [Posttransla 100.0
cd02672268 Peptidase_C19P A subfamily of Peptidase C19. Pepti 100.0
cd02670241 Peptidase_C19N A subfamily of Peptidase C19. Pepti 100.0
KOG1863 1093 consensus Ubiquitin carboxyl-terminal hydrolase [P 99.97
KOG4598 1203 consensus Putative ubiquitin-specific protease [Po 99.97
PF13423295 UCH_1: Ubiquitin carboxyl-terminal hydrolase 99.97
KOG1864587 consensus Ubiquitin-specific protease [Posttransla 99.95
KOG1871420 consensus Ubiquitin-specific protease [Posttransla 99.95
KOG1872473 consensus Ubiquitin-specific protease [Posttransla 99.93
PF0214863 zf-UBP: Zn-finger in ubiquitin-hydrolases and othe 99.61
KOG1275 1118 consensus PAB-dependent poly(A) ribonuclease, subu 99.45
smart0029050 ZnF_UBP Ubiquitin Carboxyl-terminal Hydrolase-like 99.0
KOG0804493 consensus Cytoplasmic Zn-finger protein BRAP2 (BRC 98.6
PF15499275 Peptidase_C98: Ubiquitin-specific peptidase-like, 98.39
KOG2026442 consensus Spindle pole body protein - Sad1p [Cytos 98.09
KOG1864 587 consensus Ubiquitin-specific protease [Posttransla 96.71
PF08715320 Viral_protease: Papain like viral protease; InterP 96.67
KOG1887806 consensus Ubiquitin carboxyl-terminal hydrolase [P 92.17
PF05408193 Peptidase_C28: Foot-and-mouth virus L-proteinase; 91.04
PF09416152 UPF1_Zn_bind: RNA helicase (UPF2 interacting domai 89.44
PF05408193 Peptidase_C28: Foot-and-mouth virus L-proteinase; 82.23
>cd02669 Peptidase_C19M A subfamily of Peptidase C19 Back     alignment and domain information 
Probab=100.00  E-value=3.6e-96  Score=780.98  Aligned_cols=401  Identities=61%  Similarity=1.040  Sum_probs=354.0

Q ss_pred             CccccccccccCCCCcccccccCCCCceEEecccCcccccCCCCCCcccccccCCccEEEEeCCCceEecCCCCcccCCC
Q 009986          106 PYLDTVNRQVLDFDFEKFCSVSLSNLNVYACLVCGKYYQGRGQKSHAYTHSLEAGHHVYINLRTEKVYCLPDGYEINDPS  185 (521)
Q Consensus       106 ~~l~ti~r~~l~~d~~k~Cs~~ls~~nl~~CL~CG~~~~G~~~~~ha~~H~~~~~H~v~v~l~t~~vyc~~~~~~v~d~~  185 (521)
                      ||||||||.+|||||||+|++|+++.|+|+||+||+||||||+++||+.|+.+++|++|||++|++||||||+++|.|++
T Consensus         1 ~yl~ti~r~~ldfd~e~~C~~~~~~~n~~~CL~cg~~~~g~~~~~ha~~H~~~~~H~~~v~l~t~~~yc~~~~~~v~d~~   80 (440)
T cd02669           1 PYLDTINRSVLDFDFEKVCSVSLSNLNVYACLVCGKYFQGRGKGSHAYTHSLEDNHHVFLNLETLKFYCLPDNYEIIDSS   80 (440)
T ss_pred             CchhhhhhhhccccccccccccCCCCcEEEEcccCCeecCCCCCcHHHHHhhccCCCEEEECCCCCEEEeCCCCEEeCcc
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhh---------------------------------cCCccCCCCchhhHHHHHHhCchhHHHHhcCccccc---CC
Q 009986          186 LEDIRH---------------------------------VGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENYR---HC  229 (521)
Q Consensus       186 l~di~~---------------------------------~GL~NlGNTCYmNsVLQ~L~~ip~fr~~~l~~~~~~---~~  229 (521)
                      |++|++                                 +||.|+|||||||||||+|+|+|+||++|+...+..   ..
T Consensus        81 l~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~G~vGL~NlGnTCYmNsvLQ~L~~~p~lr~~~l~~~~~~~~~~~  160 (440)
T cd02669          81 LDDIKYVLNPTYTKEQISDLDRDPKLSRDLDGKPYLPGFVGLNNIKNNDYANVIIQALSHVKPIRNFFLLYENYENIKDR  160 (440)
T ss_pred             HHHHHHHhcCCCCHHHHHHhhhccccccccCCCCccCCccCccCCCCchHHHHHHHHHHCCHHHHHHHhhccccccccCC
Confidence            998863                                 299999999999999999999999999999654322   23


Q ss_pred             CChHHHHHHHHHHHHHccCCCCCcCChHHHHHHHHHhcccCCCCCCcCCHHHHHHHHHHHHHHhhccC-CCCCCcccccc
Q 009986          230 KSPLVHRFGDLTRKIWHARNFKGQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDLRNT-KKNTSIIYECF  308 (521)
Q Consensus       230 ~~~l~~~l~~L~~~l~s~~~~~~~vsP~~ll~~i~~~s~~~F~~~~QqDA~EFl~~LLn~L~~~l~~~-~~~~sii~~~F  308 (521)
                      ..+++++|+.+++++|+++.++.+|+|.+|+++++..+++.|.++.||||+|||.||||.||+++.+. +...++|+++|
T Consensus       161 ~~~l~~~l~~l~~kl~~~~~~~~~isP~~fl~~l~~~~~~~f~~~~QqDA~EFl~~LLd~L~~~l~~~~~~~~~ii~~~F  240 (440)
T cd02669         161 KSELVKRLSELIRKIWNPRNFKGHVSPHELLQAVSKVSKKKFSITEQSDPVEFLSWLLNTLHKDLGGSKKPNSSIIHDCF  240 (440)
T ss_pred             CcHHHHHHHHHHHHHhccccCCCccCHHHHHHHHHhhcccccCCcccCCHHHHHHHHHHHHHHHhccCCCCCCCcceecc
Confidence            56899999999999999988889999999999999876788999999999999999999999999864 34678999999


Q ss_pred             CcEEEEEEEecCCCCCCCCCCcCCCCCCCCCCCCC-ceeeeeecceeeecCCCCCCcchhhhhcccCCCCchhhHhhhhc
Q 009986          309 QGELEVVKEIPKNTISGNDQNTEKGSDGGDDHDNI-TTETSRMPFLMLGLDLPPPPLFKDVMEKNIIPQVPLFNILKKFD  387 (521)
Q Consensus       309 ~g~l~~~~~c~~~~~~~~~~~~~~~~~~~~~~~C~-~~s~~~~~f~~LsL~lp~~~~~~~~~~~~~~p~vsL~~~L~~f~  387 (521)
                      +|+++++++|..+.......-..       -..|. ..+++.+||++|+|+||..++++++...+.+|+++|++||++|+
T Consensus       241 ~G~l~~~~~c~~~~~~~~~~~~~-------~~~c~~~~s~~~~pF~~LsLdip~~~~~~~~~~~~~l~~~~l~e~L~ky~  313 (440)
T cd02669         241 QGKVQIETQKIKPHAEEEGSKDK-------FFKDSRVKKTSVSPFLLLTLDLPPPPLFKDGNEENIIPQVPLKQLLKKYD  313 (440)
T ss_pred             CceEEEEEEeecccccccccccc-------cccccccceeeeccceEEEecCCCCccccccccccccCcccHHHHHHhcC
Confidence            99999999987632211100000       00143 46778899999999999999999888888899999999999999


Q ss_pred             ccceeeccceeeeEEEEEEecCCCeeEEEEeeEEecCceeeeCCeeEeecCCccccccCCCCCCCCCCCCCCceEEEeEE
Q 009986          388 GETVTEVVRPHVARMRYRVTRLPKYMILHMRRFTKNNFFVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLRSKYDLIAN  467 (521)
Q Consensus       388 ~~~~~~c~~~~~a~k~~~i~~lP~~LiihlkRF~~~~~~~~K~~~~V~FP~~~Ldl~~~~~~~~~~~~~~~~~~Y~L~av  467 (521)
                      +++|..   ...++|+++|.+||+||+||||||+++.+..+|+++.|+||++.|||++|+..+..  ......+|+|+||
T Consensus       314 ~~~c~~---~~~a~k~~~I~~LP~vLiihLKRF~~~~~~~~K~~t~V~FP~~~LDm~~y~~~~~~--~~~~~~~Y~L~av  388 (440)
T cd02669         314 GKTETE---LKDSLKRYLISRLPKYLIFHIKRFSKNNFFKEKNPTIVNFPIKNLDLSDYVHFDKP--SLNLSTKYNLVAN  388 (440)
T ss_pred             Ccccee---cccceEEEEEeeCCcEEEEEEecccCCCCccccCCCEEECCCCccchhhhhCcccc--ccCCCceEEEEEE
Confidence            877544   45668999999999999999999999888889999999999877999999974322  2234578999999


Q ss_pred             EEEeccC-CCCeEEEEEEECCCCcEEEEeCceeeeeCcccccCCCcEEEEEE
Q 009986          468 IVHDGKP-EGGFYRVFVQRKSEELWYEMQDLHVSETLPQMVALSETYMQIYE  518 (521)
Q Consensus       468 I~H~G~~-~~GHY~a~vk~~~~~~W~~~nD~~V~~v~~~~v~~~~aYllfYe  518 (521)
                      |+|.|++ ++|||+||+|+..+|+||+|||+.|++++++.|+.++||||||+
T Consensus       389 I~H~G~~~~sGHY~a~v~~~~~~~W~~fdD~~V~~v~~~~v~~~eaYll~Y~  440 (440)
T cd02669         389 IVHEGTPQEDGTWRVQLRHKSTNKWFEIQDLNVKEVLPQLIFLSESYIQIWE  440 (440)
T ss_pred             EEEeccCCCCeeEEEEEEcCCCCeEEEEECCeeeEcCHHHhccCCceEEEeC
Confidence            9999988 99999999998778999999999999999999999999999996

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
>KOG2026 consensus Spindle pole body protein - Sad1p [Cytoskeleton] Back     alignment and domain information
>KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02660 Peptidase_C19D A subfamily of Peptidase C19 Back     alignment and domain information
>cd02658 Peptidase_C19B A subfamily of Peptidase C19 Back     alignment and domain information
>cd02663 Peptidase_C19G A subfamily of Peptidase C19 Back     alignment and domain information
>cd02657 Peptidase_C19A A subfamily of Peptidase C19 Back     alignment and domain information
>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02667 Peptidase_C19K A subfamily of Peptidase C19 Back     alignment and domain information
>KOG1865 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02668 Peptidase_C19L A subfamily of Peptidase C19 Back     alignment and domain information
>cd02671 Peptidase_C19O A subfamily of Peptidase C19 Back     alignment and domain information
>COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02664 Peptidase_C19H A subfamily of Peptidase C19 Back     alignment and domain information
>cd02661 Peptidase_C19E A subfamily of Peptidase C19 Back     alignment and domain information
>cd02659 peptidase_C19C A subfamily of Peptidase C19 Back     alignment and domain information
>KOG1873 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1867 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02662 Peptidase_C19F A subfamily of Peptidase C19 Back     alignment and domain information
>COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>cd02674 Peptidase_C19R A subfamily of peptidase C19 Back     alignment and domain information
>KOG1868 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02666 Peptidase_C19J A subfamily of Peptidase C19 Back     alignment and domain information
>cd02665 Peptidase_C19I A subfamily of Peptidase C19 Back     alignment and domain information
>cd02673 Peptidase_C19Q A subfamily of Peptidase C19 Back     alignment and domain information
>cd02257 Peptidase_C19 Peptidase C19 contains ubiquitinyl hydrolases Back     alignment and domain information
>KOG1870 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1866 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02672 Peptidase_C19P A subfamily of Peptidase C19 Back     alignment and domain information
>cd02670 Peptidase_C19N A subfamily of Peptidase C19 Back     alignment and domain information
>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13423 UCH_1: Ubiquitin carboxyl-terminal hydrolase Back     alignment and domain information
>KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1871 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF02148 zf-UBP: Zn-finger in ubiquitin-hydrolases and other protein; InterPro: IPR001607 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] Back     alignment and domain information
>smart00290 ZnF_UBP Ubiquitin Carboxyl-terminal Hydrolase-like zinc finger Back     alignment and domain information
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only] Back     alignment and domain information
>PF15499 Peptidase_C98: Ubiquitin-specific peptidase-like, SUMO isopeptidase Back     alignment and domain information
>KOG2026 consensus Spindle pole body protein - Sad1p [Cytoskeleton] Back     alignment and domain information
>KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF08715 Viral_protease: Papain like viral protease; InterPro: IPR014827 This family of viral proteases are similar to the papain protease and are required for proteolytic processing of the replicase polyprotein Back     alignment and domain information
>KOG1887 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PF09416 UPF1_Zn_bind: RNA helicase (UPF2 interacting domain); InterPro: IPR018999 UPF1 (or regulator of nonsense transcripts 1 homologue) is an essential RNA helicase that detects mRNAs containing premature stop codons and triggers their degradation Back     alignment and domain information
>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query521
2y6e_A367 Ubiquitin Specific Protease 4 Is Inhibited By Its U 1e-15
2ibi_A374 Covalent Ubiquitin-Usp2 Complex Length = 374 1e-10
3v6c_A367 Crystal Structure Of Usp2 In Complex With Mutated U 2e-10
2hd5_A359 Usp2 In Complex With Ubiquitin Length = 359 2e-10
3nhe_A348 High Resolution Structure (1.26a) Of Usp2a In Compl 3e-10
2gfo_A396 Structure Of The Catalytic Domain Of Human Ubiquiti 2e-08
3n3k_A396 The Catalytic Domain Of Usp8 In Complex With A Usp8 2e-08
3mtn_A373 Usp21 In Complex With A Ubiquitin-based, Usp21-spec 9e-07
2y5b_A370 Structure Of Usp21 In Complex With Linear Diubiquit 1e-06
3i3t_A355 Crystal Structure Of Covalent Ubiquitin-usp21 Compl 1e-06
>pdb|2Y6E|A Chain A, Ubiquitin Specific Protease 4 Is Inhibited By Its Ubiquitin- Like Domain Length = 367 Back     alignment and structure 
Iteration: 1

 Score = 81.3 bits (199), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 88/359 (24%), Positives = 150/359 (41%), Gaps = 39/359 (10%)
Query: 192 VGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPE--------NYRHCKSPLVHRFGDLTRK 243
            GL N+  T F+N  +Q L    PL ++FL  E        N    K  +   + +L ++
Sbjct: 9   CGLGNLGNTXFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQ 68
Query: 244 IWHARNFKGQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDLRNTKKNTSI 303
           +W  R+    V+P  F   V + + + F    Q +  E +++LL+ LH DL   KK   +
Sbjct: 69  MWSGRD--AHVAPRMFKTQVGRFAPQ-FSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYL 125
Query: 304 IYECFQG--ELEVVKEIPKNTISGNDQNTEKGSDGGDDHDNITTETSRXXXXXX--XXXX 359
             +   G  +  V KE  +N    ND        G      +  E ++            
Sbjct: 126 ELKDANGRPDAVVAKEAWENHRLRNDSVIVDTFHGLFKSTLVCPECAKVSVTFDPFCYLT 185
Query: 360 XXXXXXKD-VMEKNII-PQ------VPLFNILKKFDG-ETVTE--------VVRPHVARM 402
                 KD VME  ++ PQ      V L + ++ F   ET+ E          +   A  
Sbjct: 186 LPLPLKKDRVMEGPMLQPQKKKKTTVALRDCIELFTTMETLGEHDPWYCPNCKKHQQATK 245
Query: 403 RYRVTRLPKYMILHMRRFTKNNFFVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLRSK- 461
           ++ +  LPK +++H++RF+ N ++ +K  T+V FP++ L + +++       N   R   
Sbjct: 246 KFDLWSLPKILVVHLKRFSYNRYWRDKLDTVVEFPIRGLNMSEFVC------NLSARPYV 299
Query: 462 YDLIANIVHDGKPEGGFYRVFVQRKSEELWYEMQDLHVSETLPQMVALSETYMQIYEQQ 520
           YDLIA   H G    G Y  + + K    WY   D +VS      +     Y+  Y+++
Sbjct: 300 YDLIAVSNHYGAMGVGHYTAYAKNKLNGKWYYFDDSNVSLASEDQIVTKAAYVLFYQRR 358
>pdb|2IBI|A Chain A, Covalent Ubiquitin-Usp2 Complex Length = 374 Back     alignment and structure
>pdb|3V6C|A Chain A, Crystal Structure Of Usp2 In Complex With Mutated Ubiquitin Length = 367 Back     alignment and structure
>pdb|2HD5|A Chain A, Usp2 In Complex With Ubiquitin Length = 359 Back     alignment and structure
>pdb|3NHE|A Chain A, High Resolution Structure (1.26a) Of Usp2a In Complex With Ubiquitin Length = 348 Back     alignment and structure
>pdb|2GFO|A Chain A, Structure Of The Catalytic Domain Of Human Ubiquitin Carboxyl-terminal Hydrolase 8 Length = 396 Back     alignment and structure
>pdb|3N3K|A Chain A, The Catalytic Domain Of Usp8 In Complex With A Usp8 Specific Inhibitor Length = 396 Back     alignment and structure
>pdb|3MTN|A Chain A, Usp21 In Complex With A Ubiquitin-based, Usp21-specific Inhibitor Length = 373 Back     alignment and structure
>pdb|2Y5B|A Chain A, Structure Of Usp21 In Complex With Linear Diubiquitin-Aldehyde Length = 370 Back     alignment and structure
>pdb|3I3T|A Chain A, Crystal Structure Of Covalent Ubiquitin-usp21 Complex Length = 355 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query521
3ihp_A 854 Ubiquitin carboxyl-terminal hydrolase 5; hydrolase 2e-51
3nhe_A348 Ubiquitin carboxyl-terminal hydrolase 2; cysteine 7e-39
2y6e_A367 Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 1e-38
2gfo_A396 Ubiquitin carboxyl-terminal hydrolase 8; protease, 6e-37
3mhs_A476 Ubiquitin carboxyl-terminal hydrolase 8; multi-pro 8e-34
3i3t_A355 Ubiquitin carboxyl-terminal hydrolase 21; hydrolas 2e-32
3c5k_A109 HD6, histone deacetylase 6; HDAC6, zinc finger, ac 3e-24
2ayn_A404 Ubiquitin carboxyl-terminal hydrolase 14; deubiqui 8e-24
1nb8_A353 Ubiquitin carboxyl-terminal hydrolase 7; UBP, deub 2e-21
2f1z_A522 Ubiquitin carboxyl-terminal hydrolase 7; hausp, US 9e-21
2uzg_A97 Ubiquitin carboxyl-terminal hydrolase 33; UBL conj 4e-20
2g45_A129 Ubiquitin carboxyl-terminal hydrolase 5; zinc fing 2e-15
2i50_A126 Ubiquitin carboxyl-terminal hydrolase 16; alpha/be 6e-12
1vjv_A415 Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, 3e-07
2ida_A102 Hypothetical protein; zinc binding protein, struct 7e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-04
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} Length = 854 Back     alignment and structure
 Score =  187 bits (475), Expect = 2e-51
 Identities = 68/488 (13%), Positives = 149/488 (30%), Gaps = 105/488 (21%)

Query: 100 EVRRDCPY---LDTVNRQVLDFDFEKFCSVSLSNLNVYACLVCG------KYYQGRGQKS 150
           EVR+   +   L  ++           CS      N++  L  G      +Y+ G G  +
Sbjct: 191 EVRQVSKHAFSLKQLDNPARIPPCGWKCSKCDMRENLWLNLTDGSILCGRRYFDGSGGNN 250

Query: 151 HAYTHSLEAGHHVYINLRTEK-----VYCLPDGYEINDPSLEDIRH-------------- 191
           HA  H  E G+ + + L T       VY   +   + DPSL +                 
Sbjct: 251 HAVEHYRETGYPLAVKLGTITPDGADVYSYDEDDMVLDPSLAEHLSHFGIDMLKMQKTDK 310

Query: 192 ----------------------------------VGLNNIKETDFVNVTIQSLMRVTPLR 217
                                              G+ N+  + ++N  +Q L  +   +
Sbjct: 311 TMTELEIDMNQRIGEWELIQESGVPLKPLFGPGYTGIRNLGNSCYLNSVVQVLFSIPDFQ 370

Query: 218 NFFL--IPENYRHCKSPLVHRFGDLTRKIWHA----------------------RNFKGQ 253
             ++  + + +++  +     F     K+ H                       +  +  
Sbjct: 371 RKYVDKLEKIFQNAPTDPTQDFSTQVAKLGHGLLSGEYSKPVPESGDGERVPEQKEVQDG 430

Query: 254 VSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDLRNTKKNTSIIYECFQGELE 313
           ++P  F   + K     F    Q +  EF   L+N +  + R+++    +     + +++
Sbjct: 431 IAPRMFKALIGK-GHPEFSTNRQQDAQEFFLHLINMVERNCRSSENPNEVFRFLVEEKIK 489

Query: 314 VVKEIPKNTISGNDQNTEKGSDGGDDHDNITTETSRMPFLMLGLDLPPPPLFKDVMEKNI 373
            +        +   + T++          +    ++   L            K  + + +
Sbjct: 490 CLA-------TEKVKYTQRVDYIMQLPVPMDAALNKEELLEYEEKKRQAEEEKMALPELV 542

Query: 374 IPQVPLFNILKKFDGETVTEVVR------PHVARMRYRVTRLPKYMILHMRRFT-KNNFF 426
             QVP  + L+ +      +           VA    R    P Y+++ +++FT   ++ 
Sbjct: 543 RAQVPFSSCLEAYGAPEQVDDFWSTALQAKSVAVKTTRFASFPDYLVIQIKKFTFGLDWV 602

Query: 427 VEKNPTLVNFPVKNLELKDYIPLPTPKENEKLRSKYDLIANIVHDGKPEGGFYRVFVQRK 486
            +K    +  P    E  D   L             D+   +V   +P+       V  +
Sbjct: 603 PKKLDVSIEMP----EELDISQLRGTGLQPGEEELPDIAPPLVTPDEPKAPMLDESVIIQ 658

Query: 487 SEELWYEM 494
             E+ + M
Sbjct: 659 LVEMGFPM 666
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} PDB: 2hd5_A 2ibi_A Length = 348 Back     alignment and structure
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens} Length = 367 Back     alignment and structure
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A Length = 396 Back     alignment and structure
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 3m99_A Length = 476 Back     alignment and structure
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} PDB: 2y5b_A 3mtn_A Length = 355 Back     alignment and structure
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A Length = 109 Back     alignment and structure
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A Length = 404 Back     alignment and structure
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A Length = 353 Back     alignment and structure
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} Length = 522 Back     alignment and structure
>2g45_A Ubiquitin carboxyl-terminal hydrolase 5; zinc finger, hydrolase; 1.99A {Homo sapiens} SCOP: g.44.1.5 PDB: 2g43_A 2l80_A Length = 129 Back     alignment and structure
>2i50_A Ubiquitin carboxyl-terminal hydrolase 16; alpha/beta zinc-finger, ring-finger, ZNF-UBP, metalloprotein, ubiquitin-binding protein, USP; NMR {Homo sapiens} Length = 126 Back     alignment and structure
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9 Length = 415 Back     alignment and structure
>2ida_A Hypothetical protein; zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: g.44.1.5 Length = 102 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query521
3mhs_A476 Ubiquitin carboxyl-terminal hydrolase 8; multi-pro 100.0
3ihp_A854 Ubiquitin carboxyl-terminal hydrolase 5; hydrolase 100.0
2y6e_A367 Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 100.0
2gfo_A396 Ubiquitin carboxyl-terminal hydrolase 8; protease, 100.0
3nhe_A348 Ubiquitin carboxyl-terminal hydrolase 2; cysteine 100.0
3i3t_A355 Ubiquitin carboxyl-terminal hydrolase 21; hydrolas 100.0
2ayn_A404 Ubiquitin carboxyl-terminal hydrolase 14; deubiqui 100.0
1nb8_A353 Ubiquitin carboxyl-terminal hydrolase 7; UBP, deub 100.0
1vjv_A415 Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, 100.0
2f1z_A522 Ubiquitin carboxyl-terminal hydrolase 7; hausp, US 100.0
2vhf_A374 Ubiquitin carboxyl-terminal hydrolase CYLD; cytoki 99.94
3c5k_A109 HD6, histone deacetylase 6; HDAC6, zinc finger, ac 99.87
2uzg_A97 Ubiquitin carboxyl-terminal hydrolase 33; UBL conj 99.81
2g45_A129 Ubiquitin carboxyl-terminal hydrolase 5; zinc fing 99.78
2ida_A102 Hypothetical protein; zinc binding protein, struct 99.59
2i50_A126 Ubiquitin carboxyl-terminal hydrolase 16; alpha/be 99.51
3mp2_A211 Non-structural protein 3; papain-like protease, TG 96.7
2fe8_A315 PP1AB, ORF1AB, replicase polyprotein 1AB; protease 96.16
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A Back     alignment and structure
Probab=100.00  E-value=1e-74  Score=623.05  Aligned_cols=359  Identities=22%  Similarity=0.346  Sum_probs=302.9

Q ss_pred             cccccCCC--CceEEecccCcccccCCCCCCcccccccCCccEEEEeCCCceEecCCCCcccCCChhhh-----------
Q 009986          123 FCSVSLSN--LNVYACLVCGKYYQGRGQKSHAYTHSLEAGHHVYINLRTEKVYCLPDGYEINDPSLEDI-----------  189 (521)
Q Consensus       123 ~Cs~~ls~--~nl~~CL~CG~~~~G~~~~~ha~~H~~~~~H~v~v~l~t~~vyc~~~~~~v~d~~l~di-----------  189 (521)
                      .|+.|...  .|+|+||+||  ++|||+++||+.|+.+++|+++|++.++.||||+|+++|.|+.|...           
T Consensus        50 ~C~~c~~~~~~~~~~cl~cg--~~~c~~~~h~~~H~~~~~h~~~~~~~~~~~~c~~~~~~v~d~~l~~~~~~~~~~~~~~  127 (476)
T 3mhs_A           50 KCGTCHEINSGATFMCLQCG--FCGCWNHSHFLSHSKQIGHIFGINSNNGLLFCFKCEDYIGNIDLINDAILAKYWDDVC  127 (476)
T ss_dssp             BCTTTCCBCSSSEEEESSSS--CEEETTTTHHHHHHHHHCCCEEEETTTCCEEETTTTEEECSCHHHHTGGGGGGHHHHH
T ss_pred             CcccccCCCCCCceEeCCCC--CCccCCchHHHHHhcccCCcEEEECCCCcEEeCCCCCCcccHHHHHHHHhhhccchhh
Confidence            38777654  7999999999  77777899999999999999999999999999999999999986431           


Q ss_pred             ------------hhcCCccCCCCchhhHHHHHHhCchhHHHHhcCccc-----ccCCCChHHHHHHHHHHHHHccCCC--
Q 009986          190 ------------RHVGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPEN-----YRHCKSPLVHRFGDLTRKIWHARNF--  250 (521)
Q Consensus       190 ------------~~~GL~NlGNTCYmNsVLQ~L~~ip~fr~~~l~~~~-----~~~~~~~l~~~l~~L~~~l~s~~~~--  250 (521)
                                  .++||.|+|||||||||||+|+|+|+|+++|+...+     ......++.++|..+++++|+....  
T Consensus       128 ~~~~~~~~~~~~G~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~  207 (476)
T 3mhs_A          128 TKTMVPSMERRDGLSGLINMGSTCFMSSILQCLIHNPYFIRHSMSQIHSNNCKVRSPDKCFSCALDKIVHELYGALNTKQ  207 (476)
T ss_dssp             HHEECCCGGGTTCCCCCCCSSSTHHHHHHHHHHHTCHHHHHHHHTTHHHHHCSSCCTTTCHHHHHHHHHHHHHSCCCC--
T ss_pred             hcccCCCccCCCCCCCCCcCCccHHHHHHHHHHhCCHHHHHHHHhcchhhhccCCCcccchHHHHHHHHHHHhhcccccc
Confidence                        124999999999999999999999999999985432     1233567999999999999986532  


Q ss_pred             -----CCcCChHHHHH---HHHHhcccCCCCCCcCCHHHHHHHHHHHHHHhhccCC------------CCCCccccccCc
Q 009986          251 -----KGQVSPHEFLQ---AVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDLRNTK------------KNTSIIYECFQG  310 (521)
Q Consensus       251 -----~~~vsP~~ll~---~i~~~s~~~F~~~~QqDA~EFl~~LLn~L~~~l~~~~------------~~~sii~~~F~g  310 (521)
                           ...+.|..++.   .++.. ++.|.+++||||+|||.+||+.||+++....            ...++|+++|+|
T Consensus       208 ~~~~~~~~~~~~~~~~~l~~~~~~-~~~f~~~~QqDA~EFl~~LLd~L~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~G  286 (476)
T 3mhs_A          208 ASSSSTSTNRQTGFIYLLTCAWKI-NQNLAGYSQQDAHEFWQFIINQIHQSYVLDLPNAKEVSRANNKQCECIVHTVFEG  286 (476)
T ss_dssp             ------CCCSCHHHHHHHHHHHHH-CGGGSSSSCEEHHHHHHHHHHHHHHHHHHHCCC-------CCCSCCSHHHHHSCE
T ss_pred             cccccccccCcchHHHHHHHHHHh-ccccCCCCCcCHHHHHHHHHHHHHHHHhhcccccccccccccccCCCcceeecce
Confidence                 12456666555   44566 7999999999999999999999999875321            246789999999


Q ss_pred             EEEEEEEecCCCCCCCCCCcCCCCCCCCCCCCCcee-eeeecceeeecCCCCCCcchhhhhcccCCCCchhhHhhhhccc
Q 009986          311 ELEVVKEIPKNTISGNDQNTEKGSDGGDDHDNITTE-TSRMPFLMLGLDLPPPPLFKDVMEKNIIPQVPLFNILKKFDGE  389 (521)
Q Consensus       311 ~l~~~~~c~~~~~~~~~~~~~~~~~~~~~~~C~~~s-~~~~~f~~LsL~lp~~~~~~~~~~~~~~p~vsL~~~L~~f~~~  389 (521)
                      +++++++|..                     |+..+ ++.++|++|+|+||..              .+|++||+.|+..
T Consensus       287 ~l~~~~~C~~---------------------C~~~s~~~~e~f~~LsL~i~~~--------------~sl~~~L~~~~~~  331 (476)
T 3mhs_A          287 SLESSIVCPG---------------------CQNNSKTTIDPFLDLSLDIKDK--------------KKLYECLDSFHKK  331 (476)
T ss_dssp             EEEEEEECTT---------------------TCCCCEEEEEEESCEEECCTTC--------------CBHHHHHHHHHCC
T ss_pred             EEEEEEEECC---------------------CCCeeCCcccchhhhccchhhh--------------hHHHHHHHHhcCh
Confidence            9999999999                     98886 5589999999999853              5899999998764


Q ss_pred             c--------eeeccceeeeEEEEEEecCCCeeEEEEeeEEec-CceeeeCCeeEeecCCccccccCCCCCCCC----CCC
Q 009986          390 T--------VTEVVRPHVARMRYRVTRLPKYMILHMRRFTKN-NFFVEKNPTLVNFPVKNLELKDYIPLPTPK----ENE  456 (521)
Q Consensus       390 ~--------~~~c~~~~~a~k~~~i~~lP~~LiihlkRF~~~-~~~~~K~~~~V~FP~~~Ldl~~~~~~~~~~----~~~  456 (521)
                      +        |..|.....+.|+++|.+||+||+|||+||.++ ++...|+.+.|.||. .|||++|+......    ...
T Consensus       332 E~l~~~~~~C~~C~~~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~K~~~~V~fP~-~Ldl~~~~~~~~~~~~~~~~~  410 (476)
T 3mhs_A          332 EQLKDFNYHCGECNSTQDAIKQLGIHKLPSVLVLQLKRFEHLLNGSNRKLDDFIEFPT-YLNMKNYCSTKEKDKHSENGK  410 (476)
T ss_dssp             EECSSCCCEETTTTEECCCEEEEEEEEBCSEEEEEECCEEECTTSCEEECCCCCBCCS-EEECGGGBSCCBCCC--CCCB
T ss_pred             hhccCCCCcCCccCCcccEEEEEEcccCCcceEEEeeeccccCCCCeEECCEEEcCCC-eeechhhcCcccccccccccC
Confidence            3        455667778899999999999999999999975 467889999999996 69999999754321    112


Q ss_pred             CCCceEEEeEEEEEeccCCCCeEEEEEEECCCCcEEEEeCceeeeeCcccccCCCcEEEEEEEeC
Q 009986          457 KLRSKYDLIANIVHDGKPEGGFYRVFVQRKSEELWYEMQDLHVSETLPQMVALSETYMQIYEQQQ  521 (521)
Q Consensus       457 ~~~~~Y~L~avI~H~G~~~~GHY~a~vk~~~~~~W~~~nD~~V~~v~~~~v~~~~aYllfYeR~~  521 (521)
                      ....+|+|+|||+|.|++++|||+||+|.. +++||+|||+.|++++.++|+..+||||||+|++
T Consensus       411 ~~~~~Y~L~avv~H~G~~~~GHY~a~vr~~-~~~W~~fnD~~V~~v~~~~v~~~~aYiLfY~r~~  474 (476)
T 3mhs_A          411 VPDIIYELIGIVSHKGTVNEGHYIAFCKIS-GGQWFKFNDSMVSSISQEEVLKEQAYLLFYTIRQ  474 (476)
T ss_dssp             CCCEEEEEEEEEEEEECSSSEEEEEEEECT-TSCEEEEETTEEEEECHHHHTTSCEEEEEEEEEE
T ss_pred             CCCCcEEEEEEEEeCCCCCCCceEEEEECC-CCcEEEEeCCceEECCHHHhccCCcEEEEEEEec
Confidence            345789999999999999999999999874 7899999999999999999999999999999974
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} Back     alignment and structure
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens} Back     alignment and structure
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A Back     alignment and structure
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} SCOP: d.3.1.9 PDB: 2hd5_A 3v6c_A 3v6e_A 2ibi_A Back     alignment and structure
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A Back     alignment and structure
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A Back     alignment and structure
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A Back     alignment and structure
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9 Back     alignment and structure
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} Back     alignment and structure
>2vhf_A Ubiquitin carboxyl-terminal hydrolase CYLD; cytokine signalling, linkage specificity, deubiquitinating enzyme, Lys63- linked, anti-oncogene; 2.8A {Homo sapiens} Back     alignment and structure
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A Back     alignment and structure
>2g45_A Ubiquitin carboxyl-terminal hydrolase 5; zinc finger, hydrolase; 1.99A {Homo sapiens} SCOP: g.44.1.5 PDB: 2g43_A 2l80_A Back     alignment and structure
>2ida_A Hypothetical protein; zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: g.44.1.5 Back     alignment and structure
>2i50_A Ubiquitin carboxyl-terminal hydrolase 16; alpha/beta zinc-finger, ring-finger, ZNF-UBP, metalloprotein, ubiquitin-binding protein, USP; NMR {Homo sapiens} Back     alignment and structure
>3mp2_A Non-structural protein 3; papain-like protease, TGEV, hydrolase; 2.50A {Porcine transmissible gastroenteritiscoronavirus} Back     alignment and structure
>2fe8_A PP1AB, ORF1AB, replicase polyprotein 1AB; protease, hydrolase; 1.85A {Sars coronavirus} PDB: 3e9s_A* 3mj5_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 521
d2hd5a1336 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hy 2e-37
d2gfoa1348 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal h 5e-35
d2uzga195 g.44.1.5 (A:36-130) Ubiquitin carboxyl-terminal hy 6e-25
d2ayna1383 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hy 4e-19
d2g45a1113 g.44.1.5 (A:173-285) Ubiquitin carboxyl-terminal h 1e-17
d1vjva_397 d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 1e-15
d1nbfa_347 d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 8e-14
d2idaa1102 g.44.1.5 (A:1-102) Hypothetical protein RPA1320 {R 3e-06
>d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 336 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 2, USP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  138 bits (348), Expect = 2e-37
 Identities = 75/344 (21%), Positives = 131/344 (38%), Gaps = 30/344 (8%)

Query: 192 VGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENYRHC------KSPLVHRFGDLTRKIW 245
            GL N+  T F+N  +Q L     LR++ L     R         + LV  F  L + IW
Sbjct: 4   AGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHHGSNAHTALVEEFAKLIQTIW 63

Query: 246 HARNFKGQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDLRNTKKNTSIIY 305
            +      VSP EF    ++    RF    Q +  EF+ +LL+ LH+++           
Sbjct: 64  TSSP-NDVVSPSEFKT-QIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTLRPKSNP 121

Query: 306 ECFQG--ELEVVKEIPKNTISGNDQNTEKGSDGGDDHDNITTETSRMPFLMLGLDLPPPP 363
           E      + E  +++ +  +   D               + +  +            P  
Sbjct: 122 ENLDHLPDDEKGRQMWRKYLEREDSRIGD-----LFVGQLKSSLTCTDCGYCSTVFDPFW 176

Query: 364 LFKDVMEKNIIPQVPLFNILKKFDGETV---------TEVVRPHVARMRYRVTRLPKYMI 414
                + K   P+V L + ++ F  E V                    ++ + R PK ++
Sbjct: 177 DLSLPIAKRGYPEVTLMDCMRLFTKEDVLDGDEKPTCCRCRGRKRCIKKFSIQRFPKILV 236

Query: 415 LHMRRFTKNNFFVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLRSKYDLIANIVHDGKP 474
           LH++RF+++     K  T VNFP+++L+L+++    T        + Y+L A   H G  
Sbjct: 237 LHLKRFSESRIRTSKLTTFVNFPLRDLDLREFASENTNH------AVYNLYAVSNHSGTT 290

Query: 475 EGGFYRVFVQRKSEELWYEMQDLHVSETLPQMVALSETYMQIYE 518
            GG Y  + +      W+   D  V+      V  S+ Y+  YE
Sbjct: 291 MGGHYTAYCRSPGTGEWHTFNDSSVTPMSSSQVRTSDAYLLFYE 334
>d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]} Length = 348 Back     information, alignment and structure
>d2uzga1 g.44.1.5 (A:36-130) Ubiquitin carboxyl-terminal hydrolase 33, UBP33 {Human (Homo sapiens) [TaxId: 9606]} Length = 95 Back     information, alignment and structure
>d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]} Length = 383 Back     information, alignment and structure
>d2g45a1 g.44.1.5 (A:173-285) Ubiquitin carboxyl-terminal hydrolase 5, UBP5 {Human (Homo sapiens) [TaxId: 9606]} Length = 113 Back     information, alignment and structure
>d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 397 Back     information, alignment and structure
>d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]} Length = 347 Back     information, alignment and structure
>d2idaa1 g.44.1.5 (A:1-102) Hypothetical protein RPA1320 {Rhodopseudomonas palustris [TaxId: 1076]} Length = 102 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query521
d1nbfa_347 Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAU 100.0
d2hd5a1336 Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Hum 100.0
d2ayna1383 Ubiquitin carboxyl-terminal hydrolase 14 {Human (H 100.0
d2gfoa1348 Ubiquitin carboxyl-terminal hydrolase 8 {Human (Ho 100.0
d1vjva_397 Ubiquitin carboxyl-terminal hydrolase 6 {Baker's y 100.0
d2uzga195 Ubiquitin carboxyl-terminal hydrolase 33, UBP33 {H 99.76
d2g45a1113 Ubiquitin carboxyl-terminal hydrolase 5, UBP5 {Hum 99.7
d2idaa1102 Hypothetical protein RPA1320 {Rhodopseudomonas pal 99.48
>d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.4e-54  Score=441.11  Aligned_cols=284  Identities=19%  Similarity=0.254  Sum_probs=239.8

Q ss_pred             hhcCCccCCCCchhhHHHHHHhCchhHHHHhcCcccc-cCCCChHHHHHHHHHHHHHccCCCCCcCChHHHHHHHHHhcc
Q 009986          190 RHVGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENY-RHCKSPLVHRFGDLTRKIWHARNFKGQVSPHEFLQAVMKASK  268 (521)
Q Consensus       190 ~~~GL~NlGNTCYmNsVLQ~L~~ip~fr~~~l~~~~~-~~~~~~l~~~l~~L~~~l~s~~~~~~~vsP~~ll~~i~~~s~  268 (521)
                      .++||.|+|||||||||||+|+++|+|+++++..... .....++...|..||..|+...   ..+.|..++..+.   .
T Consensus         5 G~vGL~NlGNTCy~NSvLQ~L~~~~~f~~~i~~~~~~~~~~~~~~~~~l~~lf~~l~~~~---~~~~~~~~~~~~~---~   78 (347)
T d1nbfa_           5 GYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTEGDDSSKSVPLALQRVFYELQHSD---KPVGTKKLTKSFG---W   78 (347)
T ss_dssp             SCCCBCCCSSCHHHHHHHHHHHTSHHHHHHHHTSCCTTCCTTTCHHHHHHHHHHHHHHCS---SCBCCHHHHHHTT---C
T ss_pred             CCcCCeeCCcchHHHHHHHHHHcCHHHHHHHHhCCccCCcccchHHHHHHHHHHHHhcCC---CCcChHHHHHhhc---h
Confidence            3579999999999999999999999999999854322 2334678999999999999876   4688999888774   4


Q ss_pred             cCCCCCCcCCHHHHHHHHHHHHHHhhccCCCCCCccccccCcEEEEEEEecCCCCCCCCCCcCCCCCCCCCCCCCceeee
Q 009986          269 KRFRIGVQSNPVEFMSWLLNTLHSDLRNTKKNTSIIYECFQGELEVVKEIPKNTISGNDQNTEKGSDGGDDHDNITTETS  348 (521)
Q Consensus       269 ~~F~~~~QqDA~EFl~~LLn~L~~~l~~~~~~~sii~~~F~g~l~~~~~c~~~~~~~~~~~~~~~~~~~~~~~C~~~s~~  348 (521)
                      +.|..+.||||+|||.+||+.|++++.... ..++|.++|.|.+...++|..                     |+..+.+
T Consensus        79 ~~~~~~~qqDa~Ef~~~ll~~l~~~~~~~~-~~~~i~~lF~g~~~~~~~C~~---------------------C~~~s~~  136 (347)
T d1nbfa_          79 ETLDSFMQHDVQELCRVLLDNVENKMKGTC-VEGTIPKLFRGKMVSYIQCKE---------------------VDYRSDR  136 (347)
T ss_dssp             CGGGGGSCBCHHHHHHHHHHHHHHHHTTST-TTTHHHHHHCEEEEEEEEESS---------------------SCCEEEE
T ss_pred             hhcchHHHHHHHHHHHHHHHHHHHHHhhcc-ccccccceeceEEEEeEEeCC---------------------ccceeee
Confidence            568899999999999999999999987654 457899999999999999999                     9999999


Q ss_pred             eecceeeecCCCCCCcchhhhhcccCCCCchhhHhhhhcccc--------eeeccceeeeEEEEEEecCCCeeEEEEeeE
Q 009986          349 RMPFLMLGLDLPPPPLFKDVMEKNIIPQVPLFNILKKFDGET--------VTEVVRPHVARMRYRVTRLPKYMILHMRRF  420 (521)
Q Consensus       349 ~~~f~~LsL~lp~~~~~~~~~~~~~~p~vsL~~~L~~f~~~~--------~~~c~~~~~a~k~~~i~~lP~~LiihlkRF  420 (521)
                      .++|+.|+|++|..              .++.++|..+...+        +..|.+...+.|+.+|.++|+||+|||+||
T Consensus       137 ~e~f~~l~L~i~~~--------------~~~~~~l~~~~~~e~l~~~~~~~~~~~~~~~~~k~~~i~~lP~vL~i~l~Rf  202 (347)
T d1nbfa_         137 REDYYDIQLSIKGK--------------KNIFESFVDYVAVEQLDGDNKYDAGEHGLQEAEKGVKFLTLPPVLHLQLMRF  202 (347)
T ss_dssp             EEEESSEEEECTTC--------------CBHHHHHHHHTCCEEECGGGCEECSTTCEECEEEEEEEEECCSEEEEEEECE
T ss_pred             eccccccccccccc--------------cchhhhHHhhcchheeccccccccccCcceeccEEEEEEecCChheEeeeee
Confidence            99999999999864              35666776665432        223445567888999999999999999999


Q ss_pred             Eec--CceeeeCCeeEeecCCccccccCCCCCCCCCCCCCCceEEEeEEEEEeccCCCCeEEEEEEECCCCcEEEEeCce
Q 009986          421 TKN--NFFVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLRSKYDLIANIVHDGKPEGGFYRVFVQRKSEELWYEMQDLH  498 (521)
Q Consensus       421 ~~~--~~~~~K~~~~V~FP~~~Ldl~~~~~~~~~~~~~~~~~~Y~L~avI~H~G~~~~GHY~a~vk~~~~~~W~~~nD~~  498 (521)
                      .++  .....|+.+.|.||. .|||++|+....    .....+|+|+|||+|.|+.++|||+||+|++.+++||.|||+.
T Consensus       203 ~~~~~~~~~~K~~~~v~fp~-~Ldl~~~~~~~~----~~~~~~Y~L~~vI~H~G~~~~GHY~~~~~~~~~~~W~~fnD~~  277 (347)
T d1nbfa_         203 MYDPQTDQNIKINDRFEFPE-QLPLDEFLQKTD----PKDPANYILHAVLVHSGDNHGGHYVVYLNPKGDGKWCKFDDDV  277 (347)
T ss_dssp             EEETTTTEEEECCCCCBCCS-EEECGGGBSSCC----TTSCCEEEEEEEEEEEEETTEEEEEEEECTTSSSCCEEEETTE
T ss_pred             eeccccCcccccCceEeeee-eecccccccccc----ccCccceeeEEEEEecCCCCCCEEEEeeecCCCCEEEEEECCc
Confidence            865  356789999999995 699999987432    2335679999999999988999999999988788999999999


Q ss_pred             eeeeCcccccC---------------CCcEEEEEEEe
Q 009986          499 VSETLPQMVAL---------------SETYMQIYEQQ  520 (521)
Q Consensus       499 V~~v~~~~v~~---------------~~aYllfYeR~  520 (521)
                      |++++.++|+.               ..||||||+|+
T Consensus       278 V~~v~~~ev~~~~~g~~~~~~~~~~~~~aYiLfY~r~  314 (347)
T d1nbfa_         278 VSRCTKEEAIEHNYGGHDDDLSVRHCTNAYMLVYIRE  314 (347)
T ss_dssp             EEECCHHHHTGGGSCCCCSCCSTTTTEEEEEEEEEEG
T ss_pred             eEECCHHHHHHhhcCCCccccccCCCCCEEEEEEEec
Confidence            99999999863               35999999995
>d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2uzga1 g.44.1.5 (A:36-130) Ubiquitin carboxyl-terminal hydrolase 33, UBP33 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2g45a1 g.44.1.5 (A:173-285) Ubiquitin carboxyl-terminal hydrolase 5, UBP5 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2idaa1 g.44.1.5 (A:1-102) Hypothetical protein RPA1320 {Rhodopseudomonas palustris [TaxId: 1076]} Back     information, alignment and structure