Citrus Sinensis ID: 009992

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520
MKPRYRTSLSLVIFILFTLYLPDITTSSSSSRTKCKAWLVQSIPTDMPHLPRVPGIVSSGNVLKWLAGNSTKRLDIIAQYWQLIARPNNSRSGDYGYSEDDMKRFGAQEGFDVYKSIENAADRNVRVRLLQHLGVYPDFTTEASNLASGRKNVENVTLLLGDWWGSGIVHAKVWISDCRDVYIGSANNDWKSLTQVKEVGIYLVGCPTIAKKVEVYFENLWTLSSLNSSTYTRTVSDQQWQANRTVPCWSHFLDPKGRCRSPLPPVLEVPHVEGYPILSDPYMFRETMETPGSNYSTLQPHYSYLSFAPPELSFGKYMADEQAWVDTIKSVGTRATLRISTMDWLGQSQYLKQTVYWSALSSAVSEVVFSKHANVKILVAYWAHFINNTDEYLKSLLYSNVLCNSSKYNKCSGKVEIKYYKVPGYNLTGPAIQNGSNTGNIYPGFTRVNHGKYAVSDSRAHIGTSNLVWDYFYTTAGVSFGTYNPAIVSQLQEIFDADWNSPYAFPVEELGDGHAHASSI
cccccHHHHHHHHHHHHHHHcccccccccccccccEEEEEEcccccccccccccccccHHHHHHHHHHHcccEEEEEEEEEEEccccccccccccccccccccccccccHHHHHHHHHHHHccccEEEEcccccccccccHHHHHHHcccccEEEEEEEEcccccccEEEEEEEEEcccEEEEccccccHHHHccEEEEEEEEEcccHHHHHHHHHHHHHHccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccEEEEEEcccccccccccccccHHHHHHHHHHHHHHcccEEEEEEEEcccccccHHHHHHHHHHHcccccccccccccccEEEEEEEcccccccccccccccccccccccccEEEcccEEEEcccEEEEccccccccccccccEEEEEccHHHHHHHHHHHHHHcccccccccccccccccccccc
ccccccHHHHHEEEEHHHHHcccccccccccccccEEEEEEEccccccccccccccccHHHHHHHHHHHHHccEEEEEEEEEcccccccccccccccccccccccccHHHHHHHHHHHHHHHcccEEEEEEcccccccccHHHHHHHHccccEEEEEEcccccccccEEEEEEEEEEccEEEEEcccccHHHHHHHHHccEEEEccHHHHHHHHHHHHHHHHHcccccccccccEcccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccEEEEEcccccccccccccHHHHHHHHHHHcccccEEEEEHHHcccccccccccccccHHHHHHHHHHHHcccEEEEEEEccccccHHHHHHHHHHHHHccccccccccccccEEEEEEEEEcccccccccHccccccccccccccEEccccEEEEccEEEEEccccccccEEccccEEEEEccHHHHHHHHHHHHHHcccccccccccccccccccccc
MKPRYRTSLSLVIFILFTLylpdittsssssrtKCKAWLVqsiptdmphlprvpgivssGNVLKWLAGNSTKRLDIIAQYWQLIarpnnsrsgdygyseddmkrfgaqegFDVYKSIENAADRNVRVRLLQHlgvypdftteasnlasgrknVENVTLLLGDWWGSGIVHAKVWISDCRDVYIGSANNDWKSLTQVKEVGIYLVGCPTIAKKVEVYFENLWTlsslnsstytrtvsdqqwqanrtvpcwshfldpkgrcrsplppvlevphvegypilsdpymfretmetpgsnystlqphysylsfappelsfgkymadEQAWVDTIKSVGTRATLRISTMDWLGQSQYLKQTVYWSALSSAVSEVVFSKHANVKILVAYWAHFINNTDEYLKSLLYSNVlcnsskynkcsgkveikyykvpgynltgpaiqngsntgniypgftrvnhgkyavsdsrahigtsnLVWDYFYTTagvsfgtynpAIVSQLQEIfdadwnspyafpveelgdghahassi
MKPRYRTSLSLVIFILFTLYLPdittsssssrtKCKAWLVQSiptdmphlprvpgivsSGNVLKWLAGNSTKRLDIIAQYWQliarpnnsrsgDYGYSEDDMKRFGAQEGFDVYKSIENAADRNVRVRLLQHLGVYPDFTTeasnlasgrkNVENVTLLLGDWWGSGIVHAKVWISDCRDVYIGSANNDWKSLTQVKEVGIYLVGCPTIAKKVEVYFENLWTLSSLNSSTYTRTVSDQQWQANRTVPCWSHFLDPKGRCRSPLPPVLEVPHVEGYPILSDPYMFRETMETPGSNYSTLQPHYSYLSFAPPELSFGKYMADEQAWVDTIKSVGTRATLRISTMDWLGQSQYLKQTVYWSALSSAVSEVVFSKHANVKILVAYWAHFINNTDEYLKSLLYSNVLCNSSKYNKCSGKVEIKYYKVPGYNLTGPAIQNGSNTGNIYPGFTRVNHGKYAVSDSRAHIGTSNLVWDYFYTTAGVSFGTYNPAIVSQLQEIFDADWNSPYAFPVEELGDGHAHASSI
MKPRYRTSLSLVIFILFTLYLPDIttsssssRTKCKAWLVQSIPTDMPHLPRVPGIVSSGNVLKWLAGNSTKRLDIIAQYWQLIARPNNSRSGDYGYSEDDMKRFGAQEGFDVYKSIENAADRNVRVRLLQHLGVYPDFTTEASNLASGRKNVENVTLLLGDWWGSGIVHAKVWISDCRDVYIGSANNDWKSLTQVKEVGIYLVGCPTIAKKVEVYFENlwtlsslnsstytrtVSDQQWQANRTVPCWSHFLDPKGRCRSplppvlevphveGYPILSDPYMFRETMETPGSNYSTLQPHYSYLSFAPPELSFGKYMADEQAWVDTIKSVGTRATLRISTMDWLGQSQYLKQTVYWSALSSAVSEVVFSKHANVKILVAYWAHFINNTDEYLKSLLYSNVLCNSSKYNKCSGKVEIKYYKVPGYNLTGPAIQNGSNTGNIYPGFTRVNHGKYAVSDSRAHIGTSNLVWDYFYTTAGVSFGTYNPAIVSQLQEIFDADWNSPYAFPVEELGDGHAHASSI
******TSLSLVIFILFTLYLPDITT******TKCKAWLVQSIPTDMPHLPRVPGIVSSGNVLKWLAGNSTKRLDIIAQYWQLIAR*****************RFGAQEGFDVYKSIENAADRNVRVRLLQHLGVYPDFTTEASNLASGRKNVENVTLLLGDWWGSGIVHAKVWISDCRDVYIGSANNDWKSLTQVKEVGIYLVGCPTIAKKVEVYFENLWTLSSLNSSTYTRTVSDQQWQANRTVPCWSHFLDPKGRCRSPLPPVLEVPHVEGYPILSDPYMFRETMETPGSNYSTLQPHYSYLSFAPPELSFGKYMADEQAWVDTIKSVGTRATLRISTMDWLGQSQYLKQTVYWSALSSAVSEVVFSKHANVKILVAYWAHFINNTDEYLKSLLYSNVLCNSSKYNKCSGKVEIKYYKVPGYNLTGPAIQNGSNTGNIYPGFTRVNHGKYAVSDSRAHIGTSNLVWDYFYTTAGVSFGTYNPAIVSQLQEIFDADWNSPYAFPVE************
****YRT*LSLVIFILFTLYLPDITTSSSSSRTKCKAWLVQSIPTDMPHLPRVPGIVSSGNVLKWLAGNSTKRLDIIAQYWQLIARPNNSRSGDYGYSEDDMKRFGAQEGFDVYKSIENAADRNVRVRLLQHLGVYPDFTTEASNLASGRKNVENVTLLLGDWWGSGIVHAKVWISDCRDVYIGSANNDWKSLTQVKEVGIYLVGCPTIAKKVEVYFENLWTLSSLNSSTYTRTVSDQQWQANRTVPCWSHFLDPKGRCRSPLPPVLEVPHVEGYPILSDPYMFRETMETP************************KYMADEQAWVDTIKSVGTRATLRISTMDWLGQSQYLKQTVYWSALSSAVSEVVFSKHANVKILVAYWAHFINNTDEYLKSLLYSNVLCNSSKYNKCSGKVEIKYYKVPGYNLTGPAIQNGSNTGNIYPGFTRVNHGKYAVSDSRAHIGTSNLVWDYFYTTAGVSFGTYNPAIVSQLQEIFDADWNSPYAFPVEELGD********
MKPRYRTSLSLVIFILFTLYLPDIT*********CKAWLVQSIPTDMPHLPRVPGIVSSGNVLKWLAGNSTKRLDIIAQYWQLIARPNNSRSGDYGYSEDDMKRFGAQEGFDVYKSIENAADRNVRVRLLQHLGVYPDFTTEASNLASGRKNVENVTLLLGDWWGSGIVHAKVWISDCRDVYIGSANNDWKSLTQVKEVGIYLVGCPTIAKKVEVYFENLWTLSSLNSSTYTRTVSDQQWQANRTVPCWSHFLDPKGRCRSPLPPVLEVPHVEGYPILSDPYMFRETMETPGSNYSTLQPHYSYLSFAPPELSFGKYMADEQAWVDTIKSVGTRATLRISTMDWLGQSQYLKQTVYWSALSSAVSEVVFSKHANVKILVAYWAHFINNTDEYLKSLLYSNVLCNSSKYNKCSGKVEIKYYKVPGYNLTGPAIQNGSNTGNIYPGFTRVNHGKYAVSDSRAHIGTSNLVWDYFYTTAGVSFGTYNPAIVSQLQEIFDADWNSPYAFPVEEL**********
**PRYRTSLSLVIFILFTLYLPDITTSSSSSRTKCKAWLVQSIPTDMPHLPRVPGIVSSGNVLKWLAGNSTKRLDIIAQYWQLIARPNNSRSGDYGYSEDDMKRFGAQEGFDVYKSIENAADRNVRVRLLQHLGVYPDFTTEASNLASGRKNVENVTLLLGDWWGSGIVHAKVWISDCRDVYIGSANNDWKSLTQVKEVGIYLVGCPTIAKKVEVYFENLWTLSSLNSSTYTRTVSDQQWQANRTVPCWSHFLDPKGRCRSPLPPVLEVPHVEGYPILSDPYMFRETMETPGSNYSTLQPHYSYLSFAPPELSFGKYMADEQAWVDTIKSVGTRATLRISTMDWLGQSQYLKQTVYWSALSSAVSEVVFSKHANVKILVAYWAHFINNTDEYLKSLLYSNVLCNSSKYNKCSGKVEIKYYKVPGYNLT********NTGNIYPGFTRVNHGKYAVSDSRAHIGTSNLVWDYFYTTAGVSFGTYNPAIVSQLQEIFDADWNSPYAFPV*************
iiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MKPRYRTSLSLVIFILFTLYLPDITTSSSSSRTKCKAWLVQSIPTDMPHLPRVPGIVSSGNVLKWLAGNSTKRLDIIAQYWQLIARPNNSRSGDYGYSEDDMKRFGAQEGFDVYKSIENAADRNVRVRLLQHLGVYPDFTTEASNLASGRKNVENVTLLLGDWWGSGIVHAKVWISDCRDVYIGSANNDWKSLTQVKEVGIYLVGCPTIAKKVEVYFENLWTLSSLNSSTYTRTVSDQQWQANRTVPCWSHFLDPKGRCRSPLPPVLEVPHVEGYPILSDPYMFRETMETPGSNYSTLQPHYSYLSFAPPELSFGKYMADEQAWVDTIKSVGTRATLRISTMDWLGQSQYLKQTVYWSALSSAVSEVVFSKHANVKILVAYWAHFINNTDEYLKSLLYSNVLCNSSKYNKCSGKVEIKYYKVPGYNLTGPAIQNGSNTGNIYPGFTRVNHGKYAVSDSRAHIGTSNLVWDYFYTTAGVSFGTYNPAIVSQLQEIFDADWNSPYAFPVEELGDGHAHASSI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query520 2.2.26 [Sep-21-2011]
Q54SA1422 Phospholipase D Z OS=Dict yes no 0.621 0.765 0.290 4e-40
Q54K50438 Phospholipase D Y OS=Dict no no 0.823 0.977 0.252 7e-40
O17405554 Probable phospholipase D yes no 0.776 0.729 0.280 4e-39
Q4R583490 Phospholipase D3 OS=Macac N/A no 0.778 0.826 0.253 1e-34
Q2KJJ8490 Phospholipase D3 OS=Bos t yes no 0.775 0.822 0.254 3e-34
Q5R4Y7490 Phospholipase D3 OS=Pongo yes no 0.778 0.826 0.244 1e-33
Q8IV08490 Phospholipase D3 OS=Homo yes no 0.778 0.826 0.246 1e-33
Q5FVH2488 Phospholipase D3 OS=Rattu no no 0.775 0.825 0.246 3e-33
O35405488 Phospholipase D3 OS=Mus m yes no 0.744 0.793 0.253 8e-33
Q6PB03493 Phospholipase D3 OS=Xenop N/A no 0.813 0.858 0.257 1e-32
>sp|Q54SA1|PLDZ_DICDI Phospholipase D Z OS=Dictyostelium discoideum GN=pldZ PE=3 SV=1 Back     alignment and function desciption
 Score =  166 bits (420), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 119/410 (29%), Positives = 188/410 (45%), Gaps = 87/410 (21%)

Query: 105 FGAQEGFDVYKSIENAADRNVRVRLLQHL--GVYPDFTTEASNLASGRKNVENVTLLLGD 162
           +G Q G D+YK++ +A  R V +R++Q+      PD  T+  NLA     V ++     +
Sbjct: 90  YGGQLGLDIYKALVDANSRGVSIRIVQNQPSSSMPD--TDTQNLAKLGVQVRSI-----N 142

Query: 163 W---WGSGIVHAKVWISDCRDVYIGSANNDWKSLTQVKEVGIYLVGCPTIAKKVEVYFEN 219
           W    G+GI+H KV + D    Y+GSAN DW+SL QVKE+G+    CP++    E+ F+ 
Sbjct: 143 WPSLVGAGILHTKVIVVDQVSAYLGSANLDWRSLAQVKELGVLFQNCPSMVSDTEIAFQQ 202

Query: 220 LWTLSSLNSSTYTRTVSD--QQWQANRTVPCWSHFLDPKGRCRSPLPPVLEVPHVEGYPI 277
            W     +++  T   SD   Q+QA       +  L                  + G   
Sbjct: 203 YW-----DAAVVTELPSDWGVQYQAAYNQTNMASLL------------------LNG--- 236

Query: 278 LSDPYMFRETMETPGSNYSTLQPHYSYLSFAPPELSFGKYMADEQAWVDTIKSVGTRATL 337
                   E  E              +L+ +PP+        D  A V  +   G   T+
Sbjct: 237 -------NEKFEM-------------FLAVSPPQFVSTDRTGDIDALVSAMN--GATKTI 274

Query: 338 RISTMDWLGQSQYLKQTVYWSALSSAVSEVVFSKHANVKILVAYWAHFINNTDEYLKSLL 397
            IS MD++  S Y     +W  + +A+    +++   V++L+++W H      ++L SL 
Sbjct: 275 CISVMDYIPASLYNSPNTFWPVMDNALRAAAYNRGVQVRMLISHWNHTNYAIPQWLHSLD 334

Query: 398 YSNVLCNSSKYNKCSGKVEIKYYKVPGYNLTGPAIQNGSNTGNIYPGFTRVNHGKYAVSD 457
             N              ++++++ VP +    P +            FTRVNH KY V+D
Sbjct: 335 QVN-------------NIDVRWFVVPDFP-NEPQVP-----------FTRVNHAKYMVTD 369

Query: 458 SRAHIGTSNLVWDYFYTTAGVSFGTYNPAIVSQLQEIFDADWNSPYAFPV 507
            ++++GTSN   DY+  T G+S+  YN    SQLQ IFD DWNSPY+FPV
Sbjct: 370 EQSYVGTSNWSEDYYTNTGGLSYNIYNDEFTSQLQSIFDRDWNSPYSFPV 419
Hydrolyzes membrane phospholipids, such as PtdCho (phosphatidylcholine), producing the free headgroup and PtdOH (phosphatidic acid; signaling molecule on its own).
Dictyostelium discoideum (taxid: 44689)
EC: 3EC: .EC: 1EC: .EC: 4EC: .EC: 4
>sp|Q54K50|PLDY_DICDI Phospholipase D Y OS=Dictyostelium discoideum GN=pldY PE=2 SV=1 Back     alignment and function description
>sp|O17405|PLDL_CAEEL Probable phospholipase D F09G2.8 OS=Caenorhabditis elegans GN=F09G2.8 PE=1 SV=2 Back     alignment and function description
>sp|Q4R583|PLD3_MACFA Phospholipase D3 OS=Macaca fascicularis GN=PLD3 PE=2 SV=1 Back     alignment and function description
>sp|Q2KJJ8|PLD3_BOVIN Phospholipase D3 OS=Bos taurus GN=PLD3 PE=2 SV=1 Back     alignment and function description
>sp|Q5R4Y7|PLD3_PONAB Phospholipase D3 OS=Pongo abelii GN=PLD3 PE=2 SV=1 Back     alignment and function description
>sp|Q8IV08|PLD3_HUMAN Phospholipase D3 OS=Homo sapiens GN=PLD3 PE=1 SV=1 Back     alignment and function description
>sp|Q5FVH2|PLD3_RAT Phospholipase D3 OS=Rattus norvegicus GN=Pld3 PE=2 SV=1 Back     alignment and function description
>sp|O35405|PLD3_MOUSE Phospholipase D3 OS=Mus musculus GN=Pld3 PE=2 SV=1 Back     alignment and function description
>sp|Q6PB03|PLD3_XENLA Phospholipase D3 OS=Xenopus laevis GN=pld3 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query520
147852216 862 hypothetical protein VITISV_036490 [Viti 0.973 0.587 0.764 0.0
225430482514 PREDICTED: phospholipase D Z [Vitis vini 0.984 0.996 0.759 0.0
255548738516 conserved hypothetical protein [Ricinus 0.988 0.996 0.738 0.0
357466019 727 Phospholipase D4 [Medicago truncatula] g 0.923 0.660 0.739 0.0
356509876516 PREDICTED: phospholipase D Y-like [Glyci 0.946 0.953 0.721 0.0
356518211520 PREDICTED: phospholipase D Y-like [Glyci 0.930 0.930 0.727 0.0
326494428513 predicted protein [Hordeum vulgare subsp 0.915 0.927 0.699 0.0
242096538516 hypothetical protein SORBIDRAFT_10g02566 0.976 0.984 0.664 0.0
115469242512 Os06g0649900 [Oryza sativa Japonica Grou 0.915 0.929 0.699 0.0
218198662512 hypothetical protein OsI_23920 [Oryza sa 0.915 0.929 0.699 0.0
>gi|147852216|emb|CAN82248.1| hypothetical protein VITISV_036490 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  819 bits (2115), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/509 (76%), Positives = 438/509 (86%), Gaps = 3/509 (0%)

Query: 4   RYRTSLSLVIFILFTLYLPDITTSSSSSRTKCKAWLVQSIPTDMPHLPRVPGIVSSGNVL 63
           R  T+L  V  +L  +    +   SSS   +CKAW+VQSIPT MPHLP V G++S+ +V 
Sbjct: 2   RKLTTLKSVFIVLLVIQALGVNAKSSS---QCKAWIVQSIPTHMPHLPPVSGVLSTADVF 58

Query: 64  KWLAGNSTKRLDIIAQYWQLIARPNNSRSGDYGYSEDDMKRFGAQEGFDVYKSIENAADR 123
           +WLAGNS+  LDIIAQYWQL A P++  SGDYGYS+ DM +FGA EGFDVY+++ENAADR
Sbjct: 59  QWLAGNSSLSLDIIAQYWQLNAHPDDPLSGDYGYSKADMHKFGAHEGFDVYRALENAADR 118

Query: 124 NVRVRLLQHLGVYPDFTTEASNLASGRKNVENVTLLLGDWWGSGIVHAKVWISDCRDVYI 183
           N+ +RLLQH GVYPD+T E S+LASGR NVENVTLLLG+WWGSGIVHAKVWISD RDVYI
Sbjct: 119 NISIRLLQHSGVYPDYTKEPSDLASGRPNVENVTLLLGEWWGSGIVHAKVWISDSRDVYI 178

Query: 184 GSANNDWKSLTQVKEVGIYLVGCPTIAKKVEVYFENLWTLSSLNSSTYTRTVSDQQWQAN 243
           GSANNDWKSLTQVKEVGIYLV CP+IA++VE+Y+ NLW L+SLN S YT TV DQQWQ N
Sbjct: 179 GSANNDWKSLTQVKEVGIYLVDCPSIARQVEIYYNNLWKLASLNVSAYTTTVWDQQWQIN 238

Query: 244 RTVPCWSHFLDPKGRCRSPLPPVLEVPHVEGYPILSDPYMFRETMETPGSNYSTLQPHYS 303
           R VPCWSHFL P+ RCRSPLP  + VPHV GYP LSDP MF+  ++TPG N ST +P  S
Sbjct: 239 RQVPCWSHFLTPRERCRSPLPRYVAVPHVVGYPTLSDPRMFKTPIQTPGHNCSTSKPQSS 298

Query: 304 YLSFAPPELSFGKYMADEQAWVDTIKSVGTRATLRISTMDWLGQSQYLKQTVYWSALSSA 363
           YLSFAPPELSFGK+ ADEQAWVDTIKSVGT AT+RI++MDWLGQSQY++QTVYWS+LSSA
Sbjct: 299 YLSFAPPELSFGKHQADEQAWVDTIKSVGTGATVRINSMDWLGQSQYMQQTVYWSSLSSA 358

Query: 364 VSEVVFSKHANVKILVAYWAHFINNTDEYLKSLLYSNVLCNSSKYNKCSGKVEIKYYKVP 423
           VSEVVFSKHA VKILVAYWAHFINNTD+YLKSLLYSNVLC SSKYNKCSGKVEIKYYKVP
Sbjct: 359 VSEVVFSKHAKVKILVAYWAHFINNTDQYLKSLLYSNVLCYSSKYNKCSGKVEIKYYKVP 418

Query: 424 GYNLTGPAIQNGSNTGNIYPGFTRVNHGKYAVSDSRAHIGTSNLVWDYFYTTAGVSFGTY 483
           G+NLTGPAI NG++TGNIYPGFTRVNHGKYAVSD RAHIGTSNLVWDYFY+TAGVSFGTY
Sbjct: 419 GFNLTGPAIHNGTSTGNIYPGFTRVNHGKYAVSDVRAHIGTSNLVWDYFYSTAGVSFGTY 478

Query: 484 NPAIVSQLQEIFDADWNSPYAFPVEELGD 512
           NPAIVSQLQEIFDADWNSPYA PVE L +
Sbjct: 479 NPAIVSQLQEIFDADWNSPYAVPVEPLEE 507

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225430482|ref|XP_002285518.1| PREDICTED: phospholipase D Z [Vitis vinifera] gi|296082136|emb|CBI21141.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255548738|ref|XP_002515425.1| conserved hypothetical protein [Ricinus communis] gi|223545369|gb|EEF46874.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|357466019|ref|XP_003603294.1| Phospholipase D4 [Medicago truncatula] gi|355492342|gb|AES73545.1| Phospholipase D4 [Medicago truncatula] Back     alignment and taxonomy information
>gi|356509876|ref|XP_003523669.1| PREDICTED: phospholipase D Y-like [Glycine max] Back     alignment and taxonomy information
>gi|356518211|ref|XP_003527774.1| PREDICTED: phospholipase D Y-like [Glycine max] Back     alignment and taxonomy information
>gi|326494428|dbj|BAJ90483.1| predicted protein [Hordeum vulgare subsp. vulgare] gi|326500074|dbj|BAJ90872.1| predicted protein [Hordeum vulgare subsp. vulgare] Back     alignment and taxonomy information
>gi|242096538|ref|XP_002438759.1| hypothetical protein SORBIDRAFT_10g025660 [Sorghum bicolor] gi|241916982|gb|EER90126.1| hypothetical protein SORBIDRAFT_10g025660 [Sorghum bicolor] Back     alignment and taxonomy information
>gi|115469242|ref|NP_001058220.1| Os06g0649900 [Oryza sativa Japonica Group] gi|51534980|dbj|BAD38104.1| putative phospholipase D [Oryza sativa Japonica Group] gi|113596260|dbj|BAF20134.1| Os06g0649900 [Oryza sativa Japonica Group] gi|125598051|gb|EAZ37831.1| hypothetical protein OsJ_22174 [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|218198662|gb|EEC81089.1| hypothetical protein OsI_23920 [Oryza sativa Indica Group] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query520
DICTYBASE|DDB_G0282579422 pldZ "phospholipase D3" [Dicty 0.121 0.149 0.587 5e-38
WB|WBGene00017316554 F09G2.8 [Caenorhabditis elegan 0.298 0.279 0.341 3e-36
DICTYBASE|DDB_G0287649438 pldY "phospholipase D3" [Dicty 0.209 0.248 0.376 2.8e-35
WB|WBGene00020256504 T05C3.6 [Caenorhabditis elegan 0.334 0.345 0.315 2e-34
RGD|1598308529 Pld4 "phospholipase D family, 0.321 0.315 0.279 3.6e-29
UNIPROTKB|Q8IV08490 PLD3 "Phospholipase D3" [Homo 0.321 0.340 0.311 5e-29
UNIPROTKB|Q96BZ4506 PLD4 "Phospholipase D4" [Homo 0.330 0.339 0.283 6.6e-27
UNIPROTKB|F5H2B5513 PLD4 "Phospholipase D4" [Homo 0.330 0.335 0.283 7.2e-27
UNIPROTKB|E1BVB3440 PLD4 "Uncharacterized protein" 0.307 0.363 0.273 4.5e-26
ZFIN|ZDB-GENE-030219-75779 si:dkeyp-110e4.6 "si:dkeyp-110 0.373 0.249 0.317 1.6e-25
DICTYBASE|DDB_G0282579 pldZ "phospholipase D3" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
 Score = 212 (79.7 bits), Expect = 5.0e-38, Sum P(3) = 5.0e-38
 Identities = 37/63 (58%), Positives = 46/63 (73%)

Query:   445 FTRVNHGKYAVSDSRAHIGTSNLVWDYFYTTAGVSFGTYNPAIVSQLQEIFDADWNSPYA 504
             FTRVNH KY V+D ++++GTSN   DY+  T G+S+  YN    SQLQ IFD DWNSPY+
Sbjct:   357 FTRVNHAKYMVTDEQSYVGTSNWSEDYYTNTGGLSYNIYNDEFTSQLQSIFDRDWNSPYS 416

Query:   505 FPV 507
             FPV
Sbjct:   417 FPV 419
GO:0005615 "extracellular space" evidence=IDA
GO:0008152 "metabolic process" evidence=IEA
GO:0003824 "catalytic activity" evidence=IEA
GO:0070290 "NAPE-specific phospholipase D activity" evidence=IEA
GO:0004630 "phospholipase D activity" evidence=IEA
GO:0005575 "cellular_component" evidence=ND
GO:0016787 "hydrolase activity" evidence=IEA
GO:0016042 "lipid catabolic process" evidence=IEA
GO:0006629 "lipid metabolic process" evidence=IEA
GO:0044351 "macropinocytosis" evidence=RCA
WB|WBGene00017316 F09G2.8 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0287649 pldY "phospholipase D3" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
WB|WBGene00020256 T05C3.6 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
RGD|1598308 Pld4 "phospholipase D family, member 4" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q8IV08 PLD3 "Phospholipase D3" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q96BZ4 PLD4 "Phospholipase D4" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F5H2B5 PLD4 "Phospholipase D4" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E1BVB3 PLD4 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030219-75 si:dkeyp-110e4.6 "si:dkeyp-110e4.6" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer2.7.8.5LOW CONFIDENCE prediction!
3rd Layer3.1.40.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query520
cd09107175 cd09107, PLDc_vPLD3_4_5_like_2, Putative catalytic 7e-62
cd09106153 cd09106, PLDc_vPLD3_4_5_like_1, Putative catalytic 2e-45
PHA02820424 PHA02820, PHA02820, phospholipase-D-like protein; 2e-34
cd09148187 cd09148, PLDc_vPLD4_2, Putative catalytic domain, 6e-24
cd09147186 cd09147, PLDc_vPLD3_2, Putative catalytic domain, 1e-21
cd09145170 cd09145, PLDc_vPLD4_1, Putative catalytic domain, 9e-20
cd09144172 cd09144, PLDc_vPLD3_1, Putative catalytic domain, 3e-16
PHA03003369 PHA03003, PHA03003, palmytilated EEV membrane glyc 2e-13
pfam13091129 pfam13091, PLDc_2, PLD-like domain 8e-11
cd09149188 cd09149, PLDc_vPLD5_2, Putative catalytic domain, 3e-10
cd09146163 cd09146, PLDc_vPLD5_1, Putative catalytic domain, 4e-10
cd00138119 cd00138, PLDc_SF, Catalytic domain of phospholipas 2e-07
cd09127141 cd09127, PLDc_unchar1_1, Putative catalytic domain 6e-06
cd09131143 cd09131, PLDc_unchar3, Putative catalytic domain o 6e-05
COG1502438 COG1502, Cls, Phosphatidylserine/phosphatidylglyce 3e-04
cd09128142 cd09128, PLDc_unchar1_2, Putative catalytic domain 8e-04
cd09160176 cd09160, PLDc_SMU_988_like_2, Putative catalytic d 8e-04
cd09156154 cd09156, PLDc_CLS_unchar1_1, Putative catalytic do 0.003
>gnl|CDD|197206 cd09107, PLDc_vPLD3_4_5_like_2, Putative catalytic domain, repeat 2, of vertebrate phospholipases, PLD3, PLD4 and PLD5, viral envelope proteins K4 and p37, and similar proteins Back     alignment and domain information 
 Score =  200 bits (510), Expect = 7e-62
 Identities = 73/197 (37%), Positives = 100/197 (50%), Gaps = 22/197 (11%)

Query: 304 YLSFAPPELSFGKYMADEQAWVDTIKSVGTRATLRISTMDWLGQSQYLKQTVYWSALSSA 363
           +LS +PPEL       D  A + TI S      + IS MD++  S+Y     YW  + +A
Sbjct: 1   FLSSSPPELCPPGRTDDLDALLSTIDSAKK--FIDISVMDYVPLSRYADPRKYWPVIDNA 58

Query: 364 VSEVVFSKHANVKILVAYWAHFINNTDEYLKSLLYSNVLCNSSKYNKCSGKVEIKYYKVP 423
           +      +   V++LV+ W H   + D +LKSL          K    +G +E+K + VP
Sbjct: 59  LRRAAVDRGVKVRLLVSNWKHTDPSMDAFLKSLQLL-------KSGVGNGDIEVKIFTVP 111

Query: 424 GYNLTGPAIQNGSNTGNIYPGFTRVNHGKYAVSDSRAHIGTSNLVWDYFYTTAGVSFGTY 483
           G   T                F RVNH KY V+D RA+IGTSN   DYFY TAGVS    
Sbjct: 112 GDQST-------------KIPFARVNHAKYMVTDERAYIGTSNWSGDYFYNTAGVSLVIN 158

Query: 484 NPAIVSQLQEIFDADWN 500
           +PAIV QL+++F+ DWN
Sbjct: 159 DPAIVQQLKDVFERDWN 175

Putative catalytic domain, repeat 2, of vertebrate phospholipases D, PLD3, PLD4, and PLD5 (EC 3.1.4.4), viral envelope proteins (vaccinia virus proteins K4 and p37), and similar proteins. Most family members contain two copies of the HKD motifs (H-x-K-x(4)-D, where x represents any amino acid residue), and have been classified into the phospholipase D (PLD) superfamily. Proteins in this subfamily are associated with Golgi membranes, altering their lipid content by the conversion of phospholipids into phosphatidic acid, which is thought to be involved in the regulation of lipid movement. ADP ribosylation factor (ARF), a small guanosine triphosphate binding protein, might be required activity. The vaccinia virus p37 protein, encoded by the F13L gene, is also associated with Golgi membranes and is required for the envelopment and spread of the extracellular enveloped virus (EEV). The vaccinia virus protein K4, encoded by the HindIII K4L gene, remains to be characterized. Sequence analysis indicates that the vaccinia virus proteins K4 and p37 might have evolved from one or more captured eukaryotic genes involved in cellular lipid metabolism. Up to date, no catalytic activity of PLD3 has been shown. Furthermore, due to the lack of functional important histidine and lysine residues in the HKD motif, mammalian PLD5 has been characterized as an inactive PLD. The poxvirus p37 proteins may also lack PLD enzymatic activity, since they contain only one partially conserved HKD motif (N-x-K-x(4)-D). Length = 175
>gnl|CDD|197205 cd09106, PLDc_vPLD3_4_5_like_1, Putative catalytic domain, repeat 1, of vertebrate phospholipases, PLD3, PLD4 and PLD5, viral envelope proteins K4 and p37, and similar proteins Back     alignment and domain information
>gnl|CDD|222934 PHA02820, PHA02820, phospholipase-D-like protein; Provisional Back     alignment and domain information
>gnl|CDD|197246 cd09148, PLDc_vPLD4_2, Putative catalytic domain, repeat 2, of vertebrate phospholipase PLD4 Back     alignment and domain information
>gnl|CDD|197245 cd09147, PLDc_vPLD3_2, Putative catalytic domain, repeat 2, of vertebrate phospholipase PLD3 Back     alignment and domain information
>gnl|CDD|197243 cd09145, PLDc_vPLD4_1, Putative catalytic domain, repeat 1, of vertebrate phospholipase PLD4 Back     alignment and domain information
>gnl|CDD|197242 cd09144, PLDc_vPLD3_1, Putative catalytic domain, repeat 1, of vertebrate phospholipase PLD3 Back     alignment and domain information
>gnl|CDD|177506 PHA03003, PHA03003, palmytilated EEV membrane glycoprotein; Provisional Back     alignment and domain information
>gnl|CDD|221916 pfam13091, PLDc_2, PLD-like domain Back     alignment and domain information
>gnl|CDD|197247 cd09149, PLDc_vPLD5_2, Putative catalytic domain, repeat 2, of inactive veterbrate phospholipase PLD5 Back     alignment and domain information
>gnl|CDD|197244 cd09146, PLDc_vPLD5_1, Putative catalytic domain, repeat 1, of inactive veterbrate phospholipase PLD5 Back     alignment and domain information
>gnl|CDD|197200 cd00138, PLDc_SF, Catalytic domain of phospholipase D superfamily proteins Back     alignment and domain information
>gnl|CDD|197225 cd09127, PLDc_unchar1_1, Putative catalytic domain, repeat 1, of uncharacterized phospholipase D-like proteins Back     alignment and domain information
>gnl|CDD|197229 cd09131, PLDc_unchar3, Putative catalytic domain of uncharacterized phospholipase D-like proteins Back     alignment and domain information
>gnl|CDD|224419 COG1502, Cls, Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes [Lipid metabolism] Back     alignment and domain information
>gnl|CDD|197226 cd09128, PLDc_unchar1_2, Putative catalytic domain, repeat 2, of uncharacterized phospholipase D-like proteins Back     alignment and domain information
>gnl|CDD|197257 cd09160, PLDc_SMU_988_like_2, Putative catalytic domain, repeat 2, of Streptococcus mutans uncharacterized protein SMU_988 and similar proteins Back     alignment and domain information
>gnl|CDD|197253 cd09156, PLDc_CLS_unchar1_1, Putative catalytic domain, repeat 1, of uncharacterized proteins similar to bacterial cardiolipin synthase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 520
KOG3603456 consensus Predicted phospholipase D [General funct 100.0
PHA02820424 phospholipase-D-like protein; Provisional 100.0
PHA03003369 palmytilated EEV membrane glycoprotein; Provisiona 100.0
PRK12452509 cardiolipin synthetase; Reviewed 100.0
PRK01642483 cls cardiolipin synthetase; Reviewed 100.0
PRK11263411 cardiolipin synthase 2; Provisional 100.0
PF13918177 PLDc_3: PLD-like domain 100.0
PRK09428451 pssA phosphatidylserine synthase; Provisional 100.0
COG1502438 Cls Phosphatidylserine/phosphatidylglycerophosphat 100.0
PRK05443691 polyphosphate kinase; Provisional 99.96
TIGR03705672 poly_P_kin polyphosphate kinase 1. Members of this 99.94
PLN02866 1068 phospholipase D 99.89
PRK12452509 cardiolipin synthetase; Reviewed 99.88
PRK01642483 cls cardiolipin synthetase; Reviewed 99.86
PRK13912177 nuclease NucT; Provisional 99.86
PRK13912177 nuclease NucT; Provisional 99.86
PRK11263411 cardiolipin synthase 2; Provisional 99.84
PHA03003369 palmytilated EEV membrane glycoprotein; Provisiona 99.82
cd00138176 PLDc Phospholipase D. Active site motifs; The PLD 99.81
PLN02352758 phospholipase D epsilon 99.81
PHA02820424 phospholipase-D-like protein; Provisional 99.81
PLN02270808 phospholipase D alpha 99.8
cd00138176 PLDc Phospholipase D. Active site motifs; The PLD 99.78
PF13091126 PLDc_2: PLD-like domain; PDB: 2ZE4_A 2ZE9_A 1BYS_A 99.75
PLN03008 868 Phospholipase D delta 99.74
PF13091126 PLDc_2: PLD-like domain; PDB: 2ZE4_A 2ZE9_A 1BYS_A 99.71
COG1502438 Cls Phosphatidylserine/phosphatidylglycerophosphat 99.7
KOG1329887 consensus Phospholipase D1 [Lipid transport and me 99.63
PRK09428451 pssA phosphatidylserine synthase; Provisional 99.55
KOG3603 456 consensus Predicted phospholipase D [General funct 99.53
PRK05443 691 polyphosphate kinase; Provisional 99.44
PF13090352 PP_kinase_C: Polyphosphate kinase C-terminal domai 99.37
PLN02352758 phospholipase D epsilon 99.05
TIGR03705672 poly_P_kin polyphosphate kinase 1. Members of this 99.02
PLN028661068 phospholipase D 99.02
COG0855696 Ppk Polyphosphate kinase [Inorganic ion transport 98.97
PF07894284 DUF1669: Protein of unknown function (DUF1669); In 98.95
PLN03008868 Phospholipase D delta 98.87
KOG1329887 consensus Phospholipase D1 [Lipid transport and me 98.79
PLN02270808 phospholipase D alpha 98.74
smart0015528 PLDc Phospholipase D. Active site motifs. Phosphat 98.63
COG3886198 Predicted HKD family nuclease [DNA replication, re 98.63
PF0061428 PLDc: Phospholipase D Active site motif; InterPro: 98.4
smart0015528 PLDc Phospholipase D. Active site motifs. Phosphat 98.36
PF07894284 DUF1669: Protein of unknown function (DUF1669); In 98.35
KOG3964469 consensus Phosphatidylglycerolphosphate synthase [ 98.02
COG3886198 Predicted HKD family nuclease [DNA replication, re 98.01
COG0855 696 Ppk Polyphosphate kinase [Inorganic ion transport 97.85
PF11495233 Regulator_TrmB: Archaeal transcriptional regulator 97.72
PF0061428 PLDc: Phospholipase D Active site motif; InterPro: 97.65
PF11495233 Regulator_TrmB: Archaeal transcriptional regulator 97.57
PF13090 352 PP_kinase_C: Polyphosphate kinase C-terminal domai 97.49
PF13918177 PLDc_3: PLD-like domain 97.36
PF09565 296 RE_NgoFVII: NgoFVII restriction endonuclease; Inte 94.26
PF09565296 RE_NgoFVII: NgoFVII restriction endonuclease; Inte 92.99
KOG3964 469 consensus Phosphatidylglycerolphosphate synthase [ 89.85
>KOG3603 consensus Predicted phospholipase D [General function prediction only] Back     alignment and domain information 
Probab=100.00  E-value=5.3e-82  Score=640.84  Aligned_cols=400  Identities=31%  Similarity=0.523  Sum_probs=348.9

Q ss_pred             CCCCeEEEEEeccCCCCCCCCCCCCcccHHHHHHHHHHhcccEEEEEEEEeeeccCCCCCCCCCCCCCcccccccCCCCC
Q 009992           31 SRTKCKAWLVQSIPTDMPHLPRVPGIVSSGNVLKWLAGNSTKRLDIIAQYWQLIARPNNSRSGDYGYSEDDMKRFGAQEG  110 (520)
Q Consensus        31 ~~~~c~~~lv~s~P~~~~~~~~~~~~~~t~~~~~~lI~~Ak~sI~I~s~Y~~l~~~~~~~~~~d~~~~~~~~~~~~~~~g  110 (520)
                      |..+|++.||||||.|+.++...+. .+|.++|+.+|++|+++++|++|||+|++.|.        |.    .+.++..|
T Consensus        46 c~~~C~~~vvESIP~gl~f~~~t~~-~sT~eaW~~Ll~sA~~eldIas~ywsL~~~d~--------~~----~dsSt~~G  112 (456)
T KOG3603|consen   46 CGDTCKLVLVESIPAGLTFPDASPF-LSTKEAWLELLSTAQEELDIASFYWSLTGKDT--------GV----VDSSTQYG  112 (456)
T ss_pred             hcCceeEEEEecccccCcCcccCCC-ccHHHHHHHHhhccceEEEEEEEeecccccee--------cc----CCCcchHH
Confidence            9999999999999999999887777 89999999999999999999999999986532        11    23456779


Q ss_pred             HHHHHHHHHHhhCCCeEEEEecCCCCCCcchhHHHHHcCCCC-eEEEEeccccccCCCceeeEEEEEcCcEEEecccCCC
Q 009992          111 FDVYKSIENAADRNVRVRLLQHLGVYPDFTTEASNLASGRKN-VENVTLLLGDWWGSGIVHAKVWISDCRDVYIGSANND  189 (520)
Q Consensus       111 ~~i~~aL~~aa~rGV~VrIl~d~g~~~~~~~~~~~L~~~~~g-v~v~~~~~~~~~~~~~lH~K~~VvD~~~~~iGSaN~d  189 (520)
                      +.+++.|..++.+||+|||..+..+......+...|..  .| ++++.+++.++.++|.+|+|+||||++|+|+||+|||
T Consensus       113 ~~vy~~L~~~~~~gIsiriA~~~p~~~~~~~d~~~Le~--~Gaa~vr~id~~~l~g~GvlHtKf~vvD~khfylGSaNfD  190 (456)
T KOG3603|consen  113 EQVYNTLLALAKSGVKIRIAQSYPSGGPPNADLQVLES--LGLAQVRSIDMNRLTGGGVLHTKFWVVDIKHFYLGSANFD  190 (456)
T ss_pred             HHHHHHHHHhccCCeEEEEEeecCCCCCCcccHHHHHh--CCCceEEeecccccccCceEEEEEEEEecceEEEeccccc
Confidence            99999999999999999999986222223345566765  45 8888888888888999999999999999999999999


Q ss_pred             cccccccccccEEEECChHHHHHHHHHHHHHHhcCCCCCCccccccchhhhhccccCCC-CcccCCCCCccCCCCCCCcc
Q 009992          190 WKSLTQVKEVGIYLVGCPTIAKKVEVYFENLWTLSSLNSSTYTRTVSDQQWQANRTVPC-WSHFLDPKGRCRSPLPPVLE  268 (520)
Q Consensus       190 ~~sl~~~~E~gv~i~~~~~la~~l~~~F~~~W~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~~~~~~~~pl~~~~~  268 (520)
                      |||+++.+|+||.++||||+|+||.++|++||.++.++..                +|. ||..+.+.++...|+..   
T Consensus       191 WrSlTqvkElGv~v~NCpclakDL~kiFe~yW~lg~~~s~----------------~p~~wp~~~st~~N~~~p~~~---  251 (456)
T KOG3603|consen  191 WRSLTQVKELGVVVRNCPCLAKDLKKIFERYWYLGNAKSL----------------IPKKWPNCYSTHYNKPLPMKI---  251 (456)
T ss_pred             hhhccceeEeeeEEecChhHHHHHHHHHHHHhcCCCCCcc----------------CCCCCcccccccccccCccee---
Confidence            9999999999999999999999999999999999987752                344 87776666655433321   


Q ss_pred             CCCcCCCCccCCcccccccccCCCCCCCCCCCceeeeecCCCCCCCCCCcchHHHHHHHHhhcCCcCEEEEEEeeeeeee
Q 009992          269 VPHVEGYPILSDPYMFRETMETPGSNYSTLQPHYSYLSFAPPELSFGKYMADEQAWVDTIKSVGTRATLRISTMDWLGQS  348 (520)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~sP~~~~~~~r~~~~~all~~I~~Ak~~~~I~I~~~~y~P~~  348 (520)
                                        .+  +      +++...|+++|||.++|+||+.|++|+++.|+.|++  +|+|++|+|+|+.
T Consensus       252 ------------------~~--d------g~~~~~y~saSP~~~~~~grt~DL~ail~~i~~A~~--fv~isVMdY~Ps~  303 (456)
T KOG3603|consen  252 ------------------AV--D------GTPATPYISASPPPLNPSGRTWDLEAILNTIDEAQK--FVYISVMDYFPST  303 (456)
T ss_pred             ------------------ec--C------CCCcceEEccCCCCCCCCCCchhHHHHHHHHHHHhh--heeeeehhccchh
Confidence                              11  1      235678999999999999999999999999999999  9999999999999


Q ss_pred             ccccccccHHHHHHHHHHHHHcCCCEEEEEeccccCCCcChHHHHHHhhhccccccccCCCCCCCceeEEEEEcCCCCCC
Q 009992          349 QYLKQTVYWSALSSAVSEVVFSKHANVKILVAYWAHFINNTDEYLKSLLYSNVLCNSSKYNKCSGKVEIKYYKVPGYNLT  428 (520)
Q Consensus       349 ~~~~~~~~~~~i~~AL~~Aa~~RGV~VRILi~~~~~~~~~~~~~l~sL~~~~~l~~~~~~~~~~~~i~Vr~~~~p~~~~~  428 (520)
                      .|.++.+|| .|++|||+||+ |||+||+|++.|.|+++.|..||+||+.|...       ..+..|+||+|.+|..+. 
T Consensus       304 ~y~k~~~fw-~iDdaiR~aa~-RgV~vR~lvs~~~~~~~~m~~~L~SLq~l~~~-------~~~~~iqvk~f~VP~~~~-  373 (456)
T KOG3603|consen  304 IYSKNHRFW-EIDDAIRRAAV-RGVKVRLLVSCWKHSEPSMFRFLRSLQDLSDP-------LENGSIQVKFFIVPQTNI-  373 (456)
T ss_pred             eeecCcchh-hhhHHHHHHhh-cceEEEEEEeccCCCCchHHHHHHHHHHhcCc-------cccCceEEEEEEeCCCcc-
Confidence            999999999 99999999997 99999999999999999999999999976432       246789999999996432 


Q ss_pred             CCcccCCCCCCCCCCCcceeecceeEEecCeEEEccCCCCcccccccCCeeeeecCh----hHHHHHHHHHHhhccCCCc
Q 009992          429 GPAIQNGSNTGNIYPGFTRVNHGKYAVSDSRAHIGTSNLVWDYFYTTAGVSFGTYNP----AIVSQLQEIFDADWNSPYA  504 (520)
Q Consensus       429 ~~~~~~~~~~~~~~~~~~~~lHaK~~ViD~~a~IGS~N~d~~sf~~n~e~~l~~~~~----~~~~~l~~~F~~dw~s~ya  504 (520)
                                  .++||.|++|+||||+|..+||||+||+++||..++++++++...    .+++||+++|+|||+|+|+
T Consensus       374 ------------~~ip~~Rv~HnKymVTe~aayIGTSNws~dYf~~TaG~~ivv~q~~~~~~~~~ql~~vFeRdW~S~Ys  441 (456)
T KOG3603|consen  374 ------------EKIPFARVNHNKYMVTESAAYIGTSNWSGDYFTSTAGTAIVVRQTPHKGTLVSQLKAVFERDWNSTYS  441 (456)
T ss_pred             ------------ccCchhhhccceeEEeecceeeeccCCCccceeccCceEEEEecCCCCCcHHHHHHHHHhhccccccc
Confidence                        468999999999999999999999999999999999999998766    8999999999999999999


Q ss_pred             ccccccCCcc
Q 009992          505 FPVEELGDGH  514 (520)
Q Consensus       505 ~~l~~~~~~~  514 (520)
                      +||+...++-
T Consensus       442 ~~L~~~~~~~  451 (456)
T KOG3603|consen  442 HPLDKYAEGY  451 (456)
T ss_pred             ccchhcccCc
Confidence            9999998843

>PHA02820 phospholipase-D-like protein; Provisional Back     alignment and domain information
>PHA03003 palmytilated EEV membrane glycoprotein; Provisional Back     alignment and domain information
>PRK12452 cardiolipin synthetase; Reviewed Back     alignment and domain information
>PRK01642 cls cardiolipin synthetase; Reviewed Back     alignment and domain information
>PRK11263 cardiolipin synthase 2; Provisional Back     alignment and domain information
>PF13918 PLDc_3: PLD-like domain Back     alignment and domain information
>PRK09428 pssA phosphatidylserine synthase; Provisional Back     alignment and domain information
>COG1502 Cls Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes [Lipid metabolism] Back     alignment and domain information
>PRK05443 polyphosphate kinase; Provisional Back     alignment and domain information
>TIGR03705 poly_P_kin polyphosphate kinase 1 Back     alignment and domain information
>PLN02866 phospholipase D Back     alignment and domain information
>PRK12452 cardiolipin synthetase; Reviewed Back     alignment and domain information
>PRK01642 cls cardiolipin synthetase; Reviewed Back     alignment and domain information
>PRK13912 nuclease NucT; Provisional Back     alignment and domain information
>PRK13912 nuclease NucT; Provisional Back     alignment and domain information
>PRK11263 cardiolipin synthase 2; Provisional Back     alignment and domain information
>PHA03003 palmytilated EEV membrane glycoprotein; Provisional Back     alignment and domain information
>cd00138 PLDc Phospholipase D Back     alignment and domain information
>PLN02352 phospholipase D epsilon Back     alignment and domain information
>PHA02820 phospholipase-D-like protein; Provisional Back     alignment and domain information
>PLN02270 phospholipase D alpha Back     alignment and domain information
>cd00138 PLDc Phospholipase D Back     alignment and domain information
>PF13091 PLDc_2: PLD-like domain; PDB: 2ZE4_A 2ZE9_A 1BYS_A 1BYR_A 1V0T_A 1V0U_A 1V0V_A 1V0S_A 1V0R_A 1V0W_A Back     alignment and domain information
>PLN03008 Phospholipase D delta Back     alignment and domain information
>PF13091 PLDc_2: PLD-like domain; PDB: 2ZE4_A 2ZE9_A 1BYS_A 1BYR_A 1V0T_A 1V0U_A 1V0V_A 1V0S_A 1V0R_A 1V0W_A Back     alignment and domain information
>COG1502 Cls Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes [Lipid metabolism] Back     alignment and domain information
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism] Back     alignment and domain information
>PRK09428 pssA phosphatidylserine synthase; Provisional Back     alignment and domain information
>KOG3603 consensus Predicted phospholipase D [General function prediction only] Back     alignment and domain information
>PRK05443 polyphosphate kinase; Provisional Back     alignment and domain information
>PF13090 PP_kinase_C: Polyphosphate kinase C-terminal domain; PDB: 2O8R_A 1XDP_A 1XDO_B Back     alignment and domain information
>PLN02352 phospholipase D epsilon Back     alignment and domain information
>TIGR03705 poly_P_kin polyphosphate kinase 1 Back     alignment and domain information
>PLN02866 phospholipase D Back     alignment and domain information
>COG0855 Ppk Polyphosphate kinase [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function Back     alignment and domain information
>PLN03008 Phospholipase D delta Back     alignment and domain information
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism] Back     alignment and domain information
>PLN02270 phospholipase D alpha Back     alignment and domain information
>smart00155 PLDc Phospholipase D Back     alignment and domain information
>COG3886 Predicted HKD family nuclease [DNA replication, recombination, and repair] Back     alignment and domain information
>PF00614 PLDc: Phospholipase D Active site motif; InterPro: IPR001736 Phosphatidylcholine-hydrolysing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs) Back     alignment and domain information
>smart00155 PLDc Phospholipase D Back     alignment and domain information
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function Back     alignment and domain information
>KOG3964 consensus Phosphatidylglycerolphosphate synthase [Lipid transport and metabolism] Back     alignment and domain information
>COG3886 Predicted HKD family nuclease [DNA replication, recombination, and repair] Back     alignment and domain information
>COG0855 Ppk Polyphosphate kinase [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF11495 Regulator_TrmB: Archaeal transcriptional regulator TrmB; InterPro: IPR021586 TrmB is an alpha-glucoside sensing transcriptional regulator Back     alignment and domain information
>PF00614 PLDc: Phospholipase D Active site motif; InterPro: IPR001736 Phosphatidylcholine-hydrolysing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs) Back     alignment and domain information
>PF11495 Regulator_TrmB: Archaeal transcriptional regulator TrmB; InterPro: IPR021586 TrmB is an alpha-glucoside sensing transcriptional regulator Back     alignment and domain information
>PF13090 PP_kinase_C: Polyphosphate kinase C-terminal domain; PDB: 2O8R_A 1XDP_A 1XDO_B Back     alignment and domain information
>PF13918 PLDc_3: PLD-like domain Back     alignment and domain information
>PF09565 RE_NgoFVII: NgoFVII restriction endonuclease; InterPro: IPR019065 There are four classes of restriction endonucleases: types I, II,III and IV Back     alignment and domain information
>PF09565 RE_NgoFVII: NgoFVII restriction endonuclease; InterPro: IPR019065 There are four classes of restriction endonucleases: types I, II,III and IV Back     alignment and domain information
>KOG3964 consensus Phosphatidylglycerolphosphate synthase [Lipid transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query520
1byr_A155 Protein (endonuclease); phosphodiesterase,; 2.00A 8e-12
1byr_A155 Protein (endonuclease); phosphodiesterase,; 2.00A 7e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-08
1v0w_A506 Phospholipase D; hydrolase, substrate SOAK, dibuty 2e-05
>1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella typhimurium} SCOP: d.136.1.1 PDB: 1bys_A Length = 155 Back     alignment and structure
 Score = 62.4 bits (152), Expect = 8e-12
 Identities = 28/120 (23%), Positives = 46/120 (38%), Gaps = 5/120 (4%)

Query: 112 DVYKSIENAADRNVRVRLLQHLGVYPDFTTEASNLASGRKNVENVTLLLGDWWGSGIVHA 171
           D+ K++  A  R V V+++         T  AS  A        + L         I H 
Sbjct: 41  DIMKALVAAKKRGVDVKIVID---ERGNTGRASIAAMNYIANSGIPLRTDSN--FPIQHD 95

Query: 172 KVWISDCRDVYIGSANNDWKSLTQVKEVGIYLVGCPTIAKKVEVYFENLWTLSSLNSSTY 231
           KV I D   V  GS N    + T+  E  + +   P +A+    ++++ W       S+Y
Sbjct: 96  KVIIVDNVTVETGSFNFTKAAETKNSENAVVIWNMPKLAESFLEHWQDRWNQGRDYRSSY 155
>1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella typhimurium} SCOP: d.136.1.1 PDB: 1bys_A Length = 155 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1v0w_A Phospholipase D; hydrolase, substrate SOAK, dibutyrylphosphatidylcholine, DIC4PC; 1.35A {Streptomyces SP} SCOP: d.136.1.2 d.136.1.2 PDB: 1v0s_A 1v0r_A 1v0t_A 1v0v_A 1v0u_A 1v0y_A* 1f0i_A 2ze4_A* 2ze9_A* Length = 506 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query520
3hsi_A458 Phosphatidylserine synthase; CDP- diacylglycerol-- 100.0
1v0w_A506 Phospholipase D; hydrolase, substrate SOAK, dibuty 100.0
1xdp_A687 Polyphosphate kinase; PPK, PPK complex with AMPPNP 100.0
2o8r_A705 Polyphosphate kinase; structural genomics, protein 99.97
4ggj_A196 Mitochondrial cardiolipin hydrolase; piRNA pathway 99.91
4ggj_A196 Mitochondrial cardiolipin hydrolase; piRNA pathway 99.87
1byr_A155 Protein (endonuclease); phosphodiesterase,; 2.00A 99.87
1byr_A155 Protein (endonuclease); phosphodiesterase,; 2.00A 99.85
4gel_A220 Mitochondrial cardiolipin hydrolase; piRNA, phosph 99.83
4gel_A220 Mitochondrial cardiolipin hydrolase; piRNA, phosph 99.81
3hsi_A458 Phosphatidylserine synthase; CDP- diacylglycerol-- 99.76
1v0w_A506 Phospholipase D; hydrolase, substrate SOAK, dibuty 99.63
1xdp_A 687 Polyphosphate kinase; PPK, PPK complex with AMPPNP 99.6
2o8r_A705 Polyphosphate kinase; structural genomics, protein 99.26
3qph_A342 TRMB, A global transcription regulator; transcript 98.42
3qph_A342 TRMB, A global transcription regulator; transcript 98.27
2c1l_A 358 Restriction endonuclease; BFII, domain fusion, hyd 97.54
2c1l_A358 Restriction endonuclease; BFII, domain fusion, hyd 97.21
2f5t_X233 Archaeal transcriptional regulator TRMB; sugar-bin 96.21
2f5t_X233 Archaeal transcriptional regulator TRMB; sugar-bin 95.27
>3hsi_A Phosphatidylserine synthase; CDP- diacylglycerol--serine O-phosphatidyltransferase, structura genomics, PSI-2; HET: MSE; 2.20A {Haemophilus influenzae} Back     alignment and structure
Probab=100.00  E-value=2.8e-38  Score=338.18  Aligned_cols=343  Identities=16%  Similarity=0.104  Sum_probs=216.7

Q ss_pred             cHHHHHHHHHHhcccEEEEEEEEeeeccCCCCCCCCCCCCCcccccccCCCCCHHHHHHHHHHhhC--CCeEEEEecC--
Q 009992           58 SSGNVLKWLAGNSTKRLDIIAQYWQLIARPNNSRSGDYGYSEDDMKRFGAQEGFDVYKSIENAADR--NVRVRLLQHL--  133 (520)
Q Consensus        58 ~t~~~~~~lI~~Ak~sI~I~s~Y~~l~~~~~~~~~~d~~~~~~~~~~~~~~~g~~i~~aL~~aa~r--GV~VrIl~d~--  133 (520)
                      ..+++++++|++||++|+|++|||   .+                    |..|+.|+++|.+|++|  ||+|||++|.  
T Consensus        37 ~~~~~l~~~I~~A~~~I~i~~~~~---~~--------------------d~~g~~l~~aL~~aa~r~~GV~Vril~D~~~   93 (458)
T 3hsi_A           37 EFKTQIIELIRNAKKRIYVTALYW---QK--------------------DEAGQEILDEIYRVKQENPHLDVKVLIDWHR   93 (458)
T ss_dssp             HHHHHHHHHHHTCSSEEEEEESCB---CS--------------------SHHHHHHHHHHHHHHHHSTTCEEEEEEETTG
T ss_pred             HHHHHHHHHHHhcCCEEEEEEEEE---ec--------------------CcHHHHHHHHHHHHHhcCCCCEEEEEEECcc
Confidence            567899999999999999999888   22                    35678999999999999  9999999996  


Q ss_pred             ------CCCCCc--chhHHHHHcCCCCeEEE--Ee--ccccccCCCceeeEEEEEcCcEEEecccCCCcccccc----cc
Q 009992          134 ------GVYPDF--TTEASNLASGRKNVENV--TL--LLGDWWGSGIVHAKVWISDCRDVYIGSANNDWKSLTQ----VK  197 (520)
Q Consensus       134 ------g~~~~~--~~~~~~L~~~~~gv~v~--~~--~~~~~~~~~~lH~K~~VvD~~~~~iGSaN~d~~sl~~----~~  197 (520)
                            |+....  ......|.+.+++|+++  .+  +.......+++|+|++||||++++.| +|++..+++.    ..
T Consensus        94 ~~r~~~g~~~~~~~~~~~~~L~~~g~nv~v~~~~f~~p~~~~~~~~r~H~Ki~viD~~v~~~G-~Ni~d~y~~~~~~~~~  172 (458)
T 3hsi_A           94 AQRNLLGAEKSATNADWYCEQRQTYQLPDDPNMFFGVPINTREVFGVLHVKGFVFDDTVLYSG-ASINNVYLHQFEKYRY  172 (458)
T ss_dssp             GGSCCC-----CCHHHHHHHHHHHHTCTTCCCCEEEECSSSSGGGCCEECCEEEETTEEEEES-CCBSTTTTTCSSCCEE
T ss_pred             ccccccccccccccHHHHHHHHhhCCCceEeeeecCCccccccccCcceeeEEEECCCEEEEe-eecCHHHhcCCcccCc
Confidence                  121111  12345565422224444  33  32212245899999999999997666 9999888875    23


Q ss_pred             cccEEEECChHHHHHHHHHH--HHHHhcCCCCCC--ccccccchhhhhccccCCCCcccCCCCCccCCCCCCCccCCCcC
Q 009992          198 EVGIYLVGCPTIAKKVEVYF--ENLWTLSSLNSS--TYTRTVSDQQWQANRTVPCWSHFLDPKGRCRSPLPPVLEVPHVE  273 (520)
Q Consensus       198 E~gv~i~~~~~la~~l~~~F--~~~W~~~~~~~~--~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~pl~~~~~~~~~~  273 (520)
                      +.-++++|  +.+.|....|  +.+|........  .+.+  ...+|....      ..    ++  ..+.    ..  .
T Consensus       173 drd~~i~g--~~~~D~~~~~~~~~~~~g~~v~~l~~~~~~--~~~~~~~~~------~~----~~--~~l~----~~--~  230 (458)
T 3hsi_A          173 DRYQKITH--AELADSMVNFINDYLLDFSAVYPLDVTNRP--RTKEIRGNI------RA----YR--KDLA----QN--G  230 (458)
T ss_dssp             CCEEEEEC--HHHHHHHHHHHHHTTCCTTTCEESSSSCCC--CGGGTHHHH------HH----HH--HHHH----HH--C
T ss_pred             chhhhhcC--chHHHHHHHHHHhhhhcCccchhhHHHhcc--cchhhHHHH------HH----HH--Hhhh----hc--c
Confidence            34467888  4567777767  555643211000  0000  000010000      00    00  0000    00  0


Q ss_pred             CCCccCCcccccccccCCCCCCCCCCCceeeeecCCCCCCCCCCcchHHHHHHHHhhcCCcCEEEEEEeeeeeeeccccc
Q 009992          274 GYPILSDPYMFRETMETPGSNYSTLQPHYSYLSFAPPELSFGKYMADEQAWVDTIKSVGTRATLRISTMDWLGQSQYLKQ  353 (520)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~sP~~~~~~~r~~~~~all~~I~~Ak~~~~I~I~~~~y~P~~~~~~~  353 (520)
                      .|.         ++....+     .....+.-...|..    ......+.++++|++|++  +|+|++|||+|+      
T Consensus       231 ~~~---------~~~~~~~-----~~~~~v~p~~~~~~----~~~~i~~~~~~lI~~A~~--~I~I~tpYf~p~------  284 (458)
T 3hsi_A          231 EYS---------LKSAVKL-----PNVLSVSPLFGLGA----SGNELNQVIEDLFLQVQK--KLVICTPYFNFP------  284 (458)
T ss_dssp             CCC---------CSSCBSS-----CSSCEEEEEEEESS----SSCHHHHHHHHHHHTCSS--EEEEECSSSCCC------
T ss_pred             ccc---------ccccCCC-----CceEEEecCCCCCC----chhHHHHHHHHHHHhccc--EEEEEEeccCCC------
Confidence            000         0000000     00111111011211    122456799999999999  999999999997      


Q ss_pred             cccHHHHHHHHHHHHHcCCCEEEEEeccccCCC-------c----ChHHHHHHhh------hccccccccCCCCCCCcee
Q 009992          354 TVYWSALSSAVSEVVFSKHANVKILVAYWAHFI-------N----NTDEYLKSLL------YSNVLCNSSKYNKCSGKVE  416 (520)
Q Consensus       354 ~~~~~~i~~AL~~Aa~~RGV~VRILi~~~~~~~-------~----~~~~~l~sL~------~~~~l~~~~~~~~~~~~i~  416 (520)
                          +.+.+||+.|+ +|||+||||+++...++       +    ....++..+.      .+..+..       .+.+.
T Consensus       285 ----~~~~~aL~~Aa-~rGV~VrIi~~~~~and~y~~~~~~~~~~~~~~~lye~~~~~f~~~~~~l~~-------~G~i~  352 (458)
T 3hsi_A          285 ----RTLQHKIATLL-ENGKRVEIIVGDKVANDFYIPPEQPFKMAGALPYLYESNLRRFCEKFETQIE-------SGQLV  352 (458)
T ss_dssp             ----HHHHHHHHHHH-TTTCEEEEEEECGGGSTTCCCTTSCCCGGGGHHHHHHHHHHHHHHHTHHHHH-------HTSEE
T ss_pred             ----HHHHHHHHHHH-HCCCeEEEEECCccccCCccCCcchhhhhcchHHHHHHhhhhhHHHHHHHHh-------CCCeE
Confidence                68999999998 99999999999864222       1    1212321110      0001111       12377


Q ss_pred             EEEEEcCCCCCCCCcccCCCCCCCCCCCcceeecceeEEec-CeEEEccCCCCcccccccCCeeeeecChh--HHHHHHH
Q 009992          417 IKYYKVPGYNLTGPAIQNGSNTGNIYPGFTRVNHGKYAVSD-SRAHIGTSNLVWDYFYTTAGVSFGTYNPA--IVSQLQE  493 (520)
Q Consensus       417 Vr~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~lHaK~~ViD-~~a~IGS~N~d~~sf~~n~e~~l~~~~~~--~~~~l~~  493 (520)
                      |++|++.                      .+++|+|+||+| ++++|||+|||.|||..|.|+++++.+++  +++++++
T Consensus       353 V~i~~~~----------------------~~~lHaK~~vvD~~~~~vGS~N~d~RS~~lN~E~~~~i~~~~~~l~~~l~~  410 (458)
T 3hsi_A          353 VRLWRDG----------------------DNTYHLKGVWVDDRYILLTGNNLNPRAWRLDAENGLLIYDPQQQLLAQVEK  410 (458)
T ss_dssp             EEEECBT----------------------TBEECCCEEEETTTEEEEECCCCSHHHHHTCEEEEEEEECTTCSSHHHHHH
T ss_pred             EEEEecC----------------------CCceeEEEEEECCeEEEecCCCCCcchhhhCceeEEEEeCCcHHHHHHHHH
Confidence            9999853                      268999999998 79999999999999999999999999997  9999999


Q ss_pred             HHHhhccCCCccc
Q 009992          494 IFDADWNSPYAFP  506 (520)
Q Consensus       494 ~F~~dw~s~ya~~  506 (520)
                      .|+++|..+..++
T Consensus       411 ~f~~~~~~s~~vt  423 (458)
T 3hsi_A          411 EQNQIRQHTKVLK  423 (458)
T ss_dssp             HHHHHHTTEEECC
T ss_pred             HHHHHHHhCeEcC
Confidence            9999998754443
>1v0w_A Phospholipase D; hydrolase, substrate SOAK, dibutyrylphosphatidylcholine, DIC4PC; 1.35A {Streptomyces SP} SCOP: d.136.1.2 d.136.1.2 PDB: 1v0s_A 1v0r_A 1v0t_A 1v0v_A 1v0u_A 1v0y_A* 1f0i_A 2ze4_A* 2ze9_A* Back     alignment and structure
>1xdp_A Polyphosphate kinase; PPK, PPK complex with AMPPNP, AMPPNP, transferase; HET: ATP; 2.50A {Escherichia coli} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4 PDB: 1xdo_A* Back     alignment and structure
>2o8r_A Polyphosphate kinase; structural genomics, protein structure initiative, PSI, nysgrc, NEW YORK structural genomics research consortium; HET: MSE; 2.70A {Porphyromonas gingivalis} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4 Back     alignment and structure
>4ggj_A Mitochondrial cardiolipin hydrolase; piRNA pathway, protein-RNA interactions, piRNA RNAI, HKD MOT zinc finger, nuclease, nucleic acid binding; 1.75A {Mus musculus} PDB: 4ggk_A Back     alignment and structure
>4ggj_A Mitochondrial cardiolipin hydrolase; piRNA pathway, protein-RNA interactions, piRNA RNAI, HKD MOT zinc finger, nuclease, nucleic acid binding; 1.75A {Mus musculus} PDB: 4ggk_A Back     alignment and structure
>1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella typhimurium} SCOP: d.136.1.1 PDB: 1bys_A Back     alignment and structure
>1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella typhimurium} SCOP: d.136.1.1 PDB: 1bys_A Back     alignment and structure
>4gel_A Mitochondrial cardiolipin hydrolase; piRNA, phospholipase D, nuclease; 1.76A {Drosophila melanogaster} PDB: 4gem_A 4gen_A Back     alignment and structure
>4gel_A Mitochondrial cardiolipin hydrolase; piRNA, phospholipase D, nuclease; 1.76A {Drosophila melanogaster} PDB: 4gem_A 4gen_A Back     alignment and structure
>3hsi_A Phosphatidylserine synthase; CDP- diacylglycerol--serine O-phosphatidyltransferase, structura genomics, PSI-2; HET: MSE; 2.20A {Haemophilus influenzae} Back     alignment and structure
>1v0w_A Phospholipase D; hydrolase, substrate SOAK, dibutyrylphosphatidylcholine, DIC4PC; 1.35A {Streptomyces SP} SCOP: d.136.1.2 d.136.1.2 PDB: 1v0s_A 1v0r_A 1v0t_A 1v0v_A 1v0u_A 1v0y_A* 1f0i_A 2ze4_A* 2ze9_A* Back     alignment and structure
>1xdp_A Polyphosphate kinase; PPK, PPK complex with AMPPNP, AMPPNP, transferase; HET: ATP; 2.50A {Escherichia coli} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4 PDB: 1xdo_A* Back     alignment and structure
>2o8r_A Polyphosphate kinase; structural genomics, protein structure initiative, PSI, nysgrc, NEW YORK structural genomics research consortium; HET: MSE; 2.70A {Porphyromonas gingivalis} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4 Back     alignment and structure
>3qph_A TRMB, A global transcription regulator; transcriptional regulator; HET: SUC; 2.99A {Pyrococcus furiosus} Back     alignment and structure
>3qph_A TRMB, A global transcription regulator; transcriptional regulator; HET: SUC; 2.99A {Pyrococcus furiosus} Back     alignment and structure
>2c1l_A Restriction endonuclease; BFII, domain fusion, hydrolase; HET: TAR TLA SRT MES; 1.9A {Bacillus firmus} Back     alignment and structure
>2c1l_A Restriction endonuclease; BFII, domain fusion, hydrolase; HET: TAR TLA SRT MES; 1.9A {Bacillus firmus} Back     alignment and structure
>2f5t_X Archaeal transcriptional regulator TRMB; sugar-binding; HET: MAL; 1.45A {Thermococcus litoralis} SCOP: b.38.5.1 d.136.1.5 Back     alignment and structure
>2f5t_X Archaeal transcriptional regulator TRMB; sugar-binding; HET: MAL; 1.45A {Thermococcus litoralis} SCOP: b.38.5.1 d.136.1.5 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 520
d1byra_152 d.136.1.1 (A:) Nuclease Nuc {Salmonella typhimuriu 7e-09
d1byra_152 d.136.1.1 (A:) Nuclease Nuc {Salmonella typhimuriu 0.001
d1v0wa2246 d.136.1.2 (A:264-514) Phospholipase D {Streptomyce 2e-07
d1v0wa2246 d.136.1.2 (A:264-514) Phospholipase D {Streptomyce 3e-07
d1v0wa1258 d.136.1.2 (A:6-263) Phospholipase D {Streptomyces 9e-05
>d1byra_ d.136.1.1 (A:) Nuclease Nuc {Salmonella typhimurium [TaxId: 90371]} Length = 152 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Phospholipase D/nuclease
superfamily: Phospholipase D/nuclease
family: Nuclease
domain: Nuclease Nuc
species: Salmonella typhimurium [TaxId: 90371]

 Score = 52.7 bits (125), Expect = 7e-09
 Identities = 24/114 (21%), Positives = 44/114 (38%), Gaps = 5/114 (4%)

Query: 112 DVYKSIENAADRNVRVRLLQHLGVYPDFTTEASNLASGRKNVENVTLLLGDWWGSGIVHA 171
           D+ K++  A  R V V+++          + A+        + N  + L       I H 
Sbjct: 40  DIMKALVAAKKRGVDVKIVIDERGNTGRASIAA-----MNYIANSGIPLRTDSNFPIQHD 94

Query: 172 KVWISDCRDVYIGSANNDWKSLTQVKEVGIYLVGCPTIAKKVEVYFENLWTLSS 225
           KV I D   V  GS N    + T+  E  + +   P +A+    ++++ W    
Sbjct: 95  KVIIVDNVTVETGSFNFTKAAETKNSENAVVIWNMPKLAESFLEHWQDRWNQGR 148
>d1byra_ d.136.1.1 (A:) Nuclease Nuc {Salmonella typhimurium [TaxId: 90371]} Length = 152 Back     information, alignment and structure
>d1v0wa2 d.136.1.2 (A:264-514) Phospholipase D {Streptomyces sp. [TaxId: 1931]} Length = 246 Back     information, alignment and structure
>d1v0wa2 d.136.1.2 (A:264-514) Phospholipase D {Streptomyces sp. [TaxId: 1931]} Length = 246 Back     information, alignment and structure
>d1v0wa1 d.136.1.2 (A:6-263) Phospholipase D {Streptomyces sp. [TaxId: 1931]} Length = 258 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query520
d1byra_152 Nuclease Nuc {Salmonella typhimurium [TaxId: 90371 99.86
d1byra_152 Nuclease Nuc {Salmonella typhimurium [TaxId: 90371 99.85
d1v0wa2246 Phospholipase D {Streptomyces sp. [TaxId: 1931]} 99.79
d1v0wa2246 Phospholipase D {Streptomyces sp. [TaxId: 1931]} 99.78
d1v0wa1258 Phospholipase D {Streptomyces sp. [TaxId: 1931]} 99.78
d1v0wa1258 Phospholipase D {Streptomyces sp. [TaxId: 1931]} 99.64
d1xdpa4187 Polyphosphate kinase, PPK {Escherichia coli [TaxId 98.28
d2o8ra4186 Polyphosphate kinase, PPK {Porphyromonas gingivali 98.28
d1xdpa4187 Polyphosphate kinase, PPK {Escherichia coli [TaxId 98.24
d2o8ra4186 Polyphosphate kinase, PPK {Porphyromonas gingivali 98.21
d2o8ra3188 Polyphosphate kinase, PPK {Porphyromonas gingivali 98.19
d1xdpa3187 Polyphosphate kinase, PPK {Escherichia coli [TaxId 98.18
d2o8ra3188 Polyphosphate kinase, PPK {Porphyromonas gingivali 97.97
d1xdpa3187 Polyphosphate kinase, PPK {Escherichia coli [TaxId 97.96
d1jy1a1206 Tyrosyl-DNA phosphodiesterase TDP1 {Human (Homo sa 86.52
d1jy1a2258 Tyrosyl-DNA phosphodiesterase TDP1 {Human (Homo sa 80.83
>d1byra_ d.136.1.1 (A:) Nuclease Nuc {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Phospholipase D/nuclease
superfamily: Phospholipase D/nuclease
family: Nuclease
domain: Nuclease Nuc
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.86  E-value=4.1e-22  Score=179.33  Aligned_cols=134  Identities=19%  Similarity=0.175  Sum_probs=107.6

Q ss_pred             cHHHHHHHHHHhcccEEEEEEEEeeeccCCCCCCCCCCCCCcccccccCCCCCHHHHHHHHHHhhCCCeEEEEecCCCCC
Q 009992           58 SSGNVLKWLAGNSTKRLDIIAQYWQLIARPNNSRSGDYGYSEDDMKRFGAQEGFDVYKSIENAADRNVRVRLLQHLGVYP  137 (520)
Q Consensus        58 ~t~~~~~~lI~~Ak~sI~I~s~Y~~l~~~~~~~~~~d~~~~~~~~~~~~~~~g~~i~~aL~~aa~rGV~VrIl~d~g~~~  137 (520)
                      +..++++++|++||++|+|++|+|+                           .+.|+++|++|++|||+|||++|.....
T Consensus        13 ~~~~~i~~~I~~A~~~I~I~~~~~~---------------------------~~~i~~aL~~a~~rGV~Vril~~~~~~~   65 (152)
T d1byra_          13 SARVLVLSAIDSAKTSIRMMAYSFT---------------------------APDIMKALVAAKKRGVDVKIVIDERGNT   65 (152)
T ss_dssp             HHHHHHHHHHHHCSSEEEEEESSBC---------------------------CHHHHHHHHHHHHTTCEEEEEEESTTCC
T ss_pred             cHHHHHHHHHHhCCcEEEEEEEeec---------------------------CHHHHHHHHHHHhcCCeEEEEEEeeccc
Confidence            4567899999999999999988772                           2679999999999999999999963222


Q ss_pred             Ccchh--HHHHHcCCCCeEEEEeccccccCCCceeeEEEEEcCcEEEecccCCCcccccccccccEEEECChHHHHHHHH
Q 009992          138 DFTTE--ASNLASGRKNVENVTLLLGDWWGSGIVHAKVWISDCRDVYIGSANNDWKSLTQVKEVGIYLVGCPTIAKKVEV  215 (520)
Q Consensus       138 ~~~~~--~~~L~~~~~gv~v~~~~~~~~~~~~~lH~K~~VvD~~~~~iGSaN~d~~sl~~~~E~gv~i~~~~~la~~l~~  215 (520)
                      .....  ...+..  .++.+...     ....++|+|++|||++++++||+||+++++..+.|.++++++++++++.+.+
T Consensus        66 ~~~~~~~~~~~~~--~~~~~~~~-----~~~~~~H~K~~ivD~~~~~~GS~N~t~~~~~~n~e~~~~i~~~~~v~~~~~~  138 (152)
T d1byra_          66 GRASIAAMNYIAN--SGIPLRTD-----SNFPIQHDKVIIVDNVTVETGSFNFTKAAETKNSENAVVIWNMPKLAESFLE  138 (152)
T ss_dssp             SHHHHHHHHHHHH--TTCCEEEE-----CSSSCCCCCEEEETTTEEEEESCCBSHHHHHTSCEEEEEEESCHHHHHHHHH
T ss_pred             chhhHHHHHHhhh--cccccccc-----ccccccccceEEecCceeEecccCCChHHHhcCCcceEEEEcCHHHHHHHHH
Confidence            11111  223333  34444432     2356899999999999999999999999999999999999998999999999


Q ss_pred             HHHHHHhcCC
Q 009992          216 YFENLWTLSS  225 (520)
Q Consensus       216 ~F~~~W~~~~  225 (520)
                      .|+.+|..+.
T Consensus       139 ~F~~~w~~~~  148 (152)
T d1byra_         139 HWQDRWNQGR  148 (152)
T ss_dssp             HHHHHHHTCE
T ss_pred             HHHHHHhhCC
Confidence            9999998654
>d1byra_ d.136.1.1 (A:) Nuclease Nuc {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1v0wa2 d.136.1.2 (A:264-514) Phospholipase D {Streptomyces sp. [TaxId: 1931]} Back     information, alignment and structure
>d1v0wa2 d.136.1.2 (A:264-514) Phospholipase D {Streptomyces sp. [TaxId: 1931]} Back     information, alignment and structure
>d1v0wa1 d.136.1.2 (A:6-263) Phospholipase D {Streptomyces sp. [TaxId: 1931]} Back     information, alignment and structure
>d1v0wa1 d.136.1.2 (A:6-263) Phospholipase D {Streptomyces sp. [TaxId: 1931]} Back     information, alignment and structure
>d1xdpa4 d.136.1.4 (A:502-688) Polyphosphate kinase, PPK {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2o8ra4 d.136.1.4 (A:506-691) Polyphosphate kinase, PPK {Porphyromonas gingivalis [TaxId: 837]} Back     information, alignment and structure
>d1xdpa4 d.136.1.4 (A:502-688) Polyphosphate kinase, PPK {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2o8ra4 d.136.1.4 (A:506-691) Polyphosphate kinase, PPK {Porphyromonas gingivalis [TaxId: 837]} Back     information, alignment and structure
>d2o8ra3 d.136.1.4 (A:318-505) Polyphosphate kinase, PPK {Porphyromonas gingivalis [TaxId: 837]} Back     information, alignment and structure
>d1xdpa3 d.136.1.4 (A:315-501) Polyphosphate kinase, PPK {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2o8ra3 d.136.1.4 (A:318-505) Polyphosphate kinase, PPK {Porphyromonas gingivalis [TaxId: 837]} Back     information, alignment and structure
>d1xdpa3 d.136.1.4 (A:315-501) Polyphosphate kinase, PPK {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1jy1a1 d.136.1.3 (A:145-350) Tyrosyl-DNA phosphodiesterase TDP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jy1a2 d.136.1.3 (A:351-608) Tyrosyl-DNA phosphodiesterase TDP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure